Citrus Sinensis ID: 047305
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 767 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SAJ5 | 780 | Pentatricopeptide repeat- | yes | no | 0.946 | 0.930 | 0.584 | 0.0 | |
| Q9LQ16 | 632 | Pentatricopeptide repeat- | no | no | 0.619 | 0.751 | 0.340 | 2e-72 | |
| Q9CAN0 | 630 | Pentatricopeptide repeat- | no | no | 0.607 | 0.739 | 0.331 | 2e-71 | |
| Q9SXD1 | 630 | Pentatricopeptide repeat- | no | no | 0.623 | 0.758 | 0.34 | 9e-71 | |
| Q9CAN5 | 614 | Pentatricopeptide repeat- | no | no | 0.603 | 0.754 | 0.333 | 3e-70 | |
| Q9LQ14 | 629 | Pentatricopeptide repeat- | no | no | 0.607 | 0.740 | 0.340 | 3e-70 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.743 | 0.763 | 0.267 | 1e-68 | |
| Q9C8T7 | 559 | Pentatricopeptide repeat- | no | no | 0.666 | 0.914 | 0.297 | 9e-68 | |
| Q9SH26 | 577 | Pentatricopeptide repeat- | no | no | 0.588 | 0.781 | 0.320 | 1e-67 | |
| Q9LSL9 | 915 | Pentatricopeptide repeat- | no | no | 0.796 | 0.667 | 0.279 | 1e-67 |
| >sp|Q9SAJ5|PP133_ARATH Pentatricopeptide repeat-containing protein At1g79540 OS=Arabidopsis thaliana GN=At1g79540 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 850 bits (2196), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/739 (58%), Positives = 555/739 (75%), Gaps = 13/739 (1%)
Query: 7 EVLTILDTVTPIEPALEPLLPFLSKTTVTSVIMKTKNPQVGFRFFIWAAKRKRLRSFASN 66
EV++IL PIEPALEPL+PFLSK +TSVI N Q+GFRFFIWA++R+RLRS S
Sbjct: 36 EVISILAKKKPIEPALEPLVPFLSKNIITSVIKDEVNRQLGFRFFIWASRRERLRSRESF 95
Query: 67 SAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESFGKMKE 126
VI ML + NG DLYWQTL+EL+SG VSV S F VLIS Y K+G EKA+ESFG+MKE
Sbjct: 96 GLVIDMLSEDNGCDLYWQTLEELKSGGVSVDSYCFCVLISAYAKMGMAEKAVESFGRMKE 155
Query: 127 FDCQPDVYIYNAVLNIAFRKQLF-LLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTE 185
FDC+PDV+ YN +L + R+++F +LA AVY EM+K NC PN+ TF +L++GL K G+T
Sbjct: 156 FDCRPDVFTYNVILRVMMREEVFFMLAFAVYNEMLKCNCSPNLYTFGILMDGLYKKGRTS 215
Query: 186 VAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALL 245
A KM D+MT RGI PN+ TYTI+ISGLCQ AD+A +LF +M+ SG PD VA+NALL
Sbjct: 216 DAQKMFDDMTGRGISPNRVTYTILISGLCQRGSADDARKLFYEMQTSGNYPDSVAHNALL 275
Query: 246 NGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIE 305
+GFCKL R+ EA LLR FEKDGFV L YS LIDGLFRA+RY +A+ Y M ++ I+
Sbjct: 276 DGFCKLGRMVEAFELLRLFEKDGFVLGLRGYSSLIDGLFRARRYTQAFELYANMLKKNIK 335
Query: 306 PDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSL 365
PD++LY ++I+GLS+AGK++DA+KLLS M +GI PDTYCYNA+IK C GLL++ RSL
Sbjct: 336 PDIILYTILIQGLSKAGKIEDALKLLSSMPSKGISPDTYCYNAVIKALCGRGLLEEGRSL 395
Query: 366 QVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCK 425
Q+E+ + +S P+ T TILIC MCRNG+V +A+++F ++EK+GC PSV FNALIDGLCK
Sbjct: 396 QLEMSETESFPDACTHTILICSMCRNGLVREAEEIFTEIEKSGCSPSVATFNALIDGLCK 455
Query: 426 AGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILM 485
+GEL++A LL +KME+G+ +LFLRLS GNR S TMVE +G I KAY+ L
Sbjct: 456 SGELKEARLLLHKMEVGRPASLFLRLSHSGNR-----SFDTMVE----SGSILKAYRDLA 506
Query: 486 QLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVD 545
A++G+ PDI++YN LINGFC+ G+I+GALKL LQLKGL PDSVTY TLINGL RV
Sbjct: 507 HFADTGSSPDIVSYNVLINGFCRAGDIDGALKLLNVLQLKGLSPDSVTYNTLINGLHRVG 566
Query: 546 REEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMK 605
REE+AF++F ++ SPAVY+SLMTWSCR+RK +AF+LW++YL+ IS DDE+
Sbjct: 567 REEEAFKLF--YAKDDFRHSPAVYRSLMTWSCRKRKVLVAFNLWMKYLKKISCLDDETAN 624
Query: 606 SIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECK 665
IE+ ++GE E A++ L+E+D + ++ L PYTIWLIGLCQ G+ EAL +FSVL E K
Sbjct: 625 EIEQCFKEGETERALRRLIELDTRKDELTLGPYTIWLIGLCQSGRFHEALMVFSVLREKK 684
Query: 666 AIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVH 725
+VTPPSCVKLIHGLCKR LD A++VFLYTL N F L PRVCNYLL SLL S + ++
Sbjct: 685 ILVTPPSCVKLIHGLCKREQLDAAIEVFLYTLDNNFKLMPRVCNYLLSSLLESTEKMEIV 744
Query: 726 AYHLLCRMKSVGYDLDACL 744
+ L RM+ GY++D+ L
Sbjct: 745 S-QLTNRMERAGYNVDSML 762
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 274 bits (701), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 166/488 (34%), Positives = 255/488 (52%), Gaps = 13/488 (2%)
Query: 101 FFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMV 160
F L+S K+ E + +M+ D+Y Y+ +N R+ LALAV +M+
Sbjct: 86 FNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMM 145
Query: 161 KLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRAD 220
KL P+IVT S L+NG S + A+ ++D+M + G P+ FT+T +I GL N+A
Sbjct: 146 KLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKAS 205
Query: 221 EAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLI 280
EA L +M GC PD V Y ++NG CK +D AL+LL+ EK + Y+ +I
Sbjct: 206 EAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTII 265
Query: 281 DGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIV 340
DGL + K D+A + +M + I PDV Y +I L G+ DA +LLSDM ER I
Sbjct: 266 DGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKIN 325
Query: 341 PDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKL 400
P+ ++ALI F G L +A L E+ KR P+ T++ LI G C + +D+A+ +
Sbjct: 326 PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 385
Query: 401 FNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHD 460
F M CFP+V ++ LI G CKA +E+ ME LF +SQ G V +
Sbjct: 386 FELMISKDCFPNVVTYSTLIKGFCKAKRVEEG------ME------LFREMSQRG-LVGN 432
Query: 461 KASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFK 520
+ T++ + A A + Q+ G P+I+TYN L++G CK G + A+ +F+
Sbjct: 433 TVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFE 492
Query: 521 ELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRR 580
LQ + PD TY +I G+ + + ED + +F + G +P+ Y ++++ CR+
Sbjct: 493 YLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKG 552
Query: 581 KFSLAFSL 588
A SL
Sbjct: 553 SKEEADSL 560
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 270 bits (691), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 159/479 (33%), Positives = 251/479 (52%), Gaps = 13/479 (2%)
Query: 101 FFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMV 160
F L+S K+ + + +M+ ++Y Y+ ++N R+ LALAV +M+
Sbjct: 84 FSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMM 143
Query: 161 KLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRAD 220
KL P+IVT + L+NG + A+ ++ +M + G P+ FT+ +I GL + NRA
Sbjct: 144 KLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRAS 203
Query: 221 EAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLI 280
EA L +M GC PD V Y ++NG CK +D AL+LL+ E+ P + Y+ +I
Sbjct: 204 EAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTII 263
Query: 281 DGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIV 340
D L K ++A + +M + I P+VV Y +IR L G+ DA +LLSDM ER I
Sbjct: 264 DALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKIN 323
Query: 341 PDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKL 400
P+ ++ALI F G L +A L E+ KR P+ T++ LI G C + +D+A+ +
Sbjct: 324 PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 383
Query: 401 FNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHD 460
F M CFP+V +N LI G CKA +++ ME LF +SQ G V +
Sbjct: 384 FELMISKDCFPNVVTYNTLIKGFCKAKRVDEG------ME------LFREMSQRG-LVGN 430
Query: 461 KASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFK 520
+ T++ + A A + Q+ G LPDI+TY+ L++G C G + AL +F+
Sbjct: 431 TVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFE 490
Query: 521 ELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRR 579
LQ + PD TY +I G+ + + ED + +F + G P+ Y ++M+ CR+
Sbjct: 491 YLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRK 549
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 268 bits (686), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 170/500 (34%), Positives = 251/500 (50%), Gaps = 22/500 (4%)
Query: 101 FFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMV 160
F L+S K+ + + +M+ + Y Y+ ++N R+ LALAV +M+
Sbjct: 84 FSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMM 143
Query: 161 KLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRAD 220
KL PNIVT S L+NG S + A+ ++D+M G PN T+ +I GL N+A
Sbjct: 144 KLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKAS 203
Query: 221 EAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLI 280
EA L +M GC PD V Y ++NG CK D A LL E+ P + Y+ +I
Sbjct: 204 EAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTII 263
Query: 281 DGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIV 340
DGL + K D+A +++M + I P+VV Y +I L G+ DA +LLSDM ER I
Sbjct: 264 DGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKIN 323
Query: 341 PDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKL 400
PD + ++ALI F G L +A L E+ KR P+ T++ LI G C + +D+A+++
Sbjct: 324 PDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQM 383
Query: 401 FNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKME----IGKNPT---LFLRLSQ 453
F M CFP V +N LI G CK +E+ +F +M +G T L L Q
Sbjct: 384 FEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQ 443
Query: 454 GGN----------RVHDKA-----SLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIIT 498
G+ V D + T+++ C G + KA + L S P I T
Sbjct: 444 AGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYT 503
Query: 499 YNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMP 558
YN +I G CK G + LF L LKG++PD V Y T+I+G R +E+A +F +M
Sbjct: 504 YNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMK 563
Query: 559 QNGCTPSPAVYKSLMTWSCR 578
++G P+ Y +L+ R
Sbjct: 564 EDGTLPNSGCYNTLIRARLR 583
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 267 bits (682), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 166/498 (33%), Positives = 247/498 (49%), Gaps = 35/498 (7%)
Query: 116 KALESFGKMKEFD-------------CQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKL 162
K L + KMK+FD ++Y YN ++N R+ ALA+ +M+KL
Sbjct: 70 KLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKL 129
Query: 163 NCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEA 222
P+IVT + L+NG + A+ ++D+M + G P+ T+T ++ GL Q N+A EA
Sbjct: 130 GYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEA 189
Query: 223 YRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDG 282
L +M GC PD V Y A++NG CK D AL LL EK + YS +ID
Sbjct: 190 VALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDS 249
Query: 283 LFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPD 342
L + + D+A + +M + I PDV Y +I L G+ DA +LLSDM ER I P+
Sbjct: 250 LCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPN 309
Query: 343 TYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFN 402
+N+LI F G L +A L E+ +R PN T+ LI G C + +D+AQ++F
Sbjct: 310 VVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFT 369
Query: 403 KMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKME----IGKNPTL------FLRLS 452
M C P V +N LI+G CKA ++ LF M +G T F + S
Sbjct: 370 LMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQAS 429
Query: 453 QGGNR-----------VH-DKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYN 500
N VH + + T+++ C G + KA + L +S PDI TYN
Sbjct: 430 DCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYN 489
Query: 501 SLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQN 560
+ G CK G + LF L LKG++PD + Y T+I+G + +E+A+ +F +M ++
Sbjct: 490 IMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKED 549
Query: 561 GCTPSPAVYKSLMTWSCR 578
G P Y +L+ R
Sbjct: 550 GPLPDSGTYNTLIRAHLR 567
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 267 bits (682), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 163/479 (34%), Positives = 249/479 (51%), Gaps = 13/479 (2%)
Query: 101 FFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMV 160
F L+S K+ + + +M+ D+Y YN ++N R+ LALAV +M+
Sbjct: 83 FNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMM 142
Query: 161 KLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRAD 220
KL P+IVT S L+NG + A+ ++D+M PN T+ +I GL N+A
Sbjct: 143 KLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKAS 202
Query: 221 EAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLI 280
EA L +M GC PD Y ++NG CK +D AL+LL+ EK + Y+ +I
Sbjct: 203 EAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTII 262
Query: 281 DGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIV 340
D L K ++A + +M + I P+VV Y +IR L G+ DA +LLSDM ER I
Sbjct: 263 DALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKIN 322
Query: 341 PDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKL 400
P+ ++ALI F G L +A L E+ KR P+ T++ LI G C + +D+A+ +
Sbjct: 323 PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 382
Query: 401 FNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHD 460
F M CFP+V +N LI G CKA +E+ ME LF +SQ G V +
Sbjct: 383 FELMISKDCFPNVVTYNTLIKGFCKAKRVEEG------ME------LFREMSQRG-LVGN 429
Query: 461 KASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFK 520
+ T+++ AG A KI ++ G PDIITY+ L++G CK G + AL +F+
Sbjct: 430 TVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFE 489
Query: 521 ELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRR 579
LQ + PD TY +I G+ + + ED + +F + G P+ +Y ++++ CR+
Sbjct: 490 YLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRK 548
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 261 bits (668), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 162/605 (26%), Positives = 291/605 (48%), Gaps = 35/605 (5%)
Query: 97 VSDVFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFR-KQLFLLALAV 155
S VF +++ Y ++ +KAL + P V YNAVL+ R K+ A V
Sbjct: 133 TSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENV 192
Query: 156 YYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQ 215
+ EM++ PN+ T+++LI G +G +VA+ + D+M +G LPN TY +I G C+
Sbjct: 193 FKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCK 252
Query: 216 INRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGS 275
+ + D+ ++L M G P+ ++YN ++NG C+ R+ E +L + G+ +
Sbjct: 253 LRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVT 312
Query: 276 YSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMR 335
Y+ LI G + + +A + +M + P V+ Y +I + +AG + AM+ L MR
Sbjct: 313 YNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMR 372
Query: 336 ERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVD 395
RG+ P+ Y L+ GF G +++A + E+ P+ T+ LI G C G ++
Sbjct: 373 VRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKME 432
Query: 396 DAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKM-EIGKNPTLFLRLSQG 454
DA + M++ G P V ++ ++ G C++ ++++A + +M E G P
Sbjct: 433 DAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKP--------- 483
Query: 455 GNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNING 514
D + ++++ +C +A + ++ G PD TY +LIN +C G++
Sbjct: 484 -----DTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEK 538
Query: 515 ALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMT 574
AL+L E+ KG+ PD VTY LINGL + R +A R+ ++ PS Y +L+
Sbjct: 539 ALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIE 598
Query: 575 WSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQ 634
+C +F SL I+ F KG + A Q M K +
Sbjct: 599 -NCSNIEFKSVVSL------------------IKGFCMKGMMTEADQVFESMLGKNHKPD 639
Query: 635 LAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFL 694
Y I + G C+ G +++A ++ +V+ ++ + + L+ L K G ++ V +
Sbjct: 640 GTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIV 699
Query: 695 YTLKN 699
+ L++
Sbjct: 700 HVLRS 704
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330 OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 258 bits (660), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 156/524 (29%), Positives = 261/524 (49%), Gaps = 13/524 (2%)
Query: 55 AKRKRLRSFASNSAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDC 114
K + L S + ++S + K FDL ++++ +S + +LI+ + +
Sbjct: 2 VKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQI 61
Query: 115 EKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLL 174
AL GKM + +P + +++LN + A+A+ +MV++ P+ +TF+ L
Sbjct: 62 SLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTL 121
Query: 175 INGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGC 234
I+GL K A+ ++D M QRG PN TY +V++GLC+ D A+ L KM+ +
Sbjct: 122 IHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKI 181
Query: 235 SPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYA 294
D V +N +++ CK R VD+AL L + E G P + +YS LI L R+ +A
Sbjct: 182 EADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQ 241
Query: 295 WYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFC 354
M E+KI P++V + +I + GK +A KL DM +R I PD + YN+LI GFC
Sbjct: 242 LLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFC 301
Query: 355 DLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVG 414
LD+A+ + + +D P+ T+ LI G C++ V+D +LF +M G
Sbjct: 302 MHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTV 361
Query: 415 MFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTA 474
+ LI GL G+ + A +F +M P D + +++ C
Sbjct: 362 TYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPP-------------DIMTYSILLDGLCNN 408
Query: 475 GLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTY 534
G + KA ++ + +S DI Y ++I G CK G ++ LF L LKG++P+ VTY
Sbjct: 409 GKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTY 468
Query: 535 GTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCR 578
T+I+GL ++A+ + +M ++G P Y +L+ R
Sbjct: 469 NTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIRAHLR 512
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SH26|PP102_ARATH Pentatricopeptide repeat-containing protein At1g63400 OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 258 bits (659), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 153/477 (32%), Positives = 243/477 (50%), Gaps = 26/477 (5%)
Query: 116 KALESFGKMKEFD-------------CQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKL 162
K L + KMK+FD ++Y YN ++N R+ LALA+ +M+KL
Sbjct: 90 KLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKL 149
Query: 163 NCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEA 222
P+IVT S L+NG + A+ ++D+M + G P+ T+T +I GL N+A EA
Sbjct: 150 GYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEA 209
Query: 223 YRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDG 282
L +M GC P+ V Y ++NG CK +D A LL E + YS +ID
Sbjct: 210 VALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDS 269
Query: 283 LFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPD 342
L + + D+A + +M + + P+V+ Y +I L + DA +LLSDM ER I P+
Sbjct: 270 LCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPN 329
Query: 343 TYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFN 402
+NALI F G L +A L E+ KR P+ T++ LI G C + +D+A+ +F
Sbjct: 330 VVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFE 389
Query: 403 KMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKA 462
M CFP+V +N LI+G CKA +++ LF +M SQ G V +
Sbjct: 390 LMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREM------------SQRG-LVGNTV 436
Query: 463 SLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKEL 522
+ T++ + A A + Q+ G P+I+TYN+L++G CK G + A+ +F+ L
Sbjct: 437 TYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 496
Query: 523 QLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRR 579
Q + P TY +I G+ + + ED + +F + G P +Y ++++ CR+
Sbjct: 497 QRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRK 553
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 258 bits (659), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 180/645 (27%), Positives = 317/645 (49%), Gaps = 34/645 (5%)
Query: 20 PALEPLLPFLSKTTVTSVIMKTKNPQVGFRFFIWAAKRKRLRSFASNSAVISMLLKPNGF 79
P+L+ ++ +S + V+S+ +P+ F W ++ R + + A + LL NG+
Sbjct: 79 PSLKSMVSAISPSHVSSLFSLDLDPKTALNFSHWISQNPRYKHSVYSYASLLTLLINNGY 138
Query: 80 DLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESFGKM---KEFDCQPDVYI- 135
V VV + ++I VGD L+ KM + F+ + + I
Sbjct: 139 --------------VGVVFKIRLLMIKSCDSVGDALYVLDLCRKMNKDERFELKYKLIIG 184
Query: 136 -YNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEM 194
YN +LN R L VY EM++ PNI T++ ++NG K G E A + + ++
Sbjct: 185 CYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKI 244
Query: 195 TQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRV 254
+ G+ P+ FTYT +I G CQ D A+++F +M GC + VAY L++G C RR+
Sbjct: 245 VEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRI 304
Query: 255 DEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVM 314
DEA+ L + D P + +Y+ LI L ++R EA ++M E I+P++ Y V+
Sbjct: 305 DEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVL 364
Query: 315 IRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDS 374
I L K + A +LL M E+G++P+ YNALI G+C G+++ A + + R
Sbjct: 365 IDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKL 424
Query: 375 LPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANL 434
PNT T+ LI G C++ V A + NKM + P V +N+LIDG C++G + A
Sbjct: 425 SPNTRTYNELIKGYCKSN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSA-- 481
Query: 435 LFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLP 494
Y++ L L V D+ + +M++ C + + +A + L + G P
Sbjct: 482 --YRL---------LSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNP 530
Query: 495 DIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIF 554
+++ Y +LI+G+CK G ++ A + +++ K P+S+T+ LI+GL + ++A +
Sbjct: 531 NVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLE 590
Query: 555 GQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKS-IEEFLQK 613
+M + G P+ + L+ + F A+S + Q L + D + + I+ + ++
Sbjct: 591 EKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCRE 650
Query: 614 GEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIF 658
G + +A + +M L Y+ + G GQ A ++
Sbjct: 651 GRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVL 695
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 767 | ||||||
| 255577256 | 804 | pentatricopeptide repeat-containing prot | 0.975 | 0.930 | 0.659 | 0.0 | |
| 225441858 | 798 | PREDICTED: pentatricopeptide repeat-cont | 0.990 | 0.952 | 0.619 | 0.0 | |
| 224086982 | 789 | predicted protein [Populus trichocarpa] | 0.990 | 0.963 | 0.615 | 0.0 | |
| 297842741 | 780 | pentatricopeptide repeat-containing prot | 0.946 | 0.930 | 0.587 | 0.0 | |
| 15219409 | 780 | pentatricopeptide repeat-containing prot | 0.946 | 0.930 | 0.584 | 0.0 | |
| 449444522 | 783 | PREDICTED: pentatricopeptide repeat-cont | 0.971 | 0.951 | 0.538 | 0.0 | |
| 449475988 | 950 | PREDICTED: pentatricopeptide repeat-cont | 0.988 | 0.797 | 0.520 | 0.0 | |
| 297739643 | 722 | unnamed protein product [Vitis vinifera] | 0.889 | 0.944 | 0.463 | 0.0 | |
| 357486821 | 749 | Pentatricopeptide repeat-containing prot | 0.915 | 0.937 | 0.471 | 0.0 | |
| 357483069 | 749 | Pentatricopeptide repeat-containing prot | 0.915 | 0.937 | 0.469 | 1e-179 |
| >gi|255577256|ref|XP_002529510.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223531026|gb|EEF32879.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1026 bits (2652), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/749 (65%), Positives = 599/749 (79%), Gaps = 1/749 (0%)
Query: 6 NEVLTILDTVTPIEPALEPLLPFLSKTTVTSVIMKTKNPQVGFRFFIWAAKRKRLRSFAS 65
NEVLTI+D+V PIEPALE +PFLS + VT +I N +GFRFFIWA+K +RLRS+ S
Sbjct: 34 NEVLTIIDSVNPIEPALESKVPFLSPSIVTYIIKNPPNSLLGFRFFIWASKFRRLRSWVS 93
Query: 66 NSAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESFGKMK 125
++ +I ML+K NGF+LYWQ L E++ S+ +D F VLI Y K+ EKA+ESF MK
Sbjct: 94 HNMIIDMLIKDNGFELYWQVLKEIKRCGFSISADAFTVLIQAYAKMDMIEKAVESFEMMK 153
Query: 126 EFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTE 185
+FDC+PDV+ YN VL++ RK++ LLAL +Y M+KLNCLPNI TFS+LI+G+ KSGKT+
Sbjct: 154 DFDCKPDVFTYNTVLHVMVRKEVVLLALGIYNRMLKLNCLPNIATFSILIDGMCKSGKTQ 213
Query: 186 VAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALL 245
A++M DEMTQR ILPNK TYTI+ISGLCQ +AD AYRLF+ MKD GC PD V YNALL
Sbjct: 214 NALQMFDEMTQRRILPNKITYTIIISGLCQAQKADVAYRLFIAMKDHGCIPDSVTYNALL 273
Query: 246 NGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIE 305
+GFCKL RVDEAL LL+ FEKD +V YSCLIDGLFRA+R+++A WYRKM E I+
Sbjct: 274 HGFCKLGRVDEALGLLKYFEKDRYVLDKQGYSCLIDGLFRARRFEDAQVWYRKMTEHNIK 333
Query: 306 PDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSL 365
PDV+LY +M++GLS+AGK KDA++LL++M ERG+VPDT+CYNALIKG+CDLGLLD+A+SL
Sbjct: 334 PDVILYTIMMKGLSKAGKFKDALRLLNEMTERGLVPDTHCYNALIKGYCDLGLLDEAKSL 393
Query: 366 QVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCK 425
+EI K D + T+TILICGMCR+G+V DAQ++FN+MEK GC+PSV FNALIDG CK
Sbjct: 394 HLEISKNDCFSSACTYTILICGMCRSGLVGDAQQIFNEMEKHGCYPSVVTFNALIDGFCK 453
Query: 426 AGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILM 485
AG +EKA LLFYKMEIG+NP+LFLRLSQG NRV D ASLQTMVEQ C +GLI KAY ILM
Sbjct: 454 AGNIEKAQLLFYKMEIGRNPSLFLRLSQGANRVLDTASLQTMVEQLCDSGLILKAYNILM 513
Query: 486 QLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVD 545
QL +SG P+IITYN LI+GFCK GNINGA KLFKELQLKGL PDSVTYGTLINGL +
Sbjct: 514 QLTDSGFAPNIITYNILIHGFCKAGNINGAFKLFKELQLKGLSPDSVTYGTLINGLLSAN 573
Query: 546 REEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMK 605
REEDAF + Q+ +NGCTP VYKS MTWSCRR K +LAFSLWL+YLR I GRD E +K
Sbjct: 574 REEDAFTVLDQILKNGCTPITEVYKSFMTWSCRRNKITLAFSLWLKYLRSIPGRDSEVLK 633
Query: 606 SIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECK 665
S+EE +KGEVE A++GLLEMDFKLNDFQLAPYTIWLIGLCQ G+++EAL IF L E
Sbjct: 634 SVEENFEKGEVEEAVRGLLEMDFKLNDFQLAPYTIWLIGLCQAGRLEEALKIFFTLEEHN 693
Query: 666 AIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVH 725
+VTPPSCVKLI+ L K G LDLA ++FLYT+ G++L PR+CN LL+SLL S+D K+
Sbjct: 694 VLVTPPSCVKLIYRLLKVGNLDLAAEIFLYTIDKGYMLMPRICNRLLKSLLRSED-KRNR 752
Query: 726 AYHLLCRMKSVGYDLDACLYPKTKSLLPG 754
A+ LL RMKS+GYDLD+ L+ TK LL G
Sbjct: 753 AFDLLSRMKSLGYDLDSHLHQTTKFLLQG 781
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225441858|ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79540-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 990 bits (2559), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/762 (61%), Positives = 594/762 (77%), Gaps = 2/762 (0%)
Query: 6 NEVLTILDTVTPIEPALEPLLPFLSKTTVTSVIMKTKNPQVGFRFFIWAAKRKRLRSFAS 65
NEVLT+++TV P+E ALE L PFLS V V+ + + P++GFRFFIW +R+ RS+ +
Sbjct: 39 NEVLTVMETVNPMEDALEKLAPFLSSEIVNDVMREQRRPELGFRFFIWTTRRRSFRSWVT 98
Query: 66 NSAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESFGKMK 125
++ VI ML K +GFD YW+ L+EL++ N+ + F VLI+ Y K G EKA+ESFGKMK
Sbjct: 99 HNLVIDMLAKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGKMK 158
Query: 126 EFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTE 185
+F C+PDV+ YN++L++ +K++FLLALAVY +M+KLN PN TF +L+NGL K+GKT+
Sbjct: 159 DFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTD 218
Query: 186 VAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALL 245
A+KM DEMTQ+GI PN YTI++SGLCQ R D+ +RL MK SGC PD + NALL
Sbjct: 219 DALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALL 278
Query: 246 NGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIE 305
+GFCKL ++DEA ALL+ FEK+G+V + YS LIDGLFRAKRYDE W RKMF+ IE
Sbjct: 279 DGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIE 338
Query: 306 PDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSL 365
PDVVLY ++IRG E G V A+ +L+DM +RG+ PDTYCYNALIKGFCD+GLLD+ARSL
Sbjct: 339 PDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSL 398
Query: 366 QVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCK 425
Q+EI K D P + T+TILICGMCRNG++D+A+++FN+ME GC PS+ FNALIDGLCK
Sbjct: 399 QLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCK 458
Query: 426 AGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILM 485
AGELE+A LFYKMEIGKNP+LFLRLSQG +RV D ASLQTMVE+ C +GLI KAYK+LM
Sbjct: 459 AGELEEARHLFYKMEIGKNPSLFLRLSQGADRVMDTASLQTMVERLCESGLILKAYKLLM 518
Query: 486 QLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVD 545
QLA+SG +PDI+TYN LINGFCK NINGA KLF+ELQLKG PDSVTYGTLI+G RVD
Sbjct: 519 QLADSGVVPDIMTYNVLINGFCKAKNINGAFKLFRELQLKGHSPDSVTYGTLIDGFHRVD 578
Query: 546 REEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMK 605
REEDAFR+ QM +NGCTPS AVYK LMTWSCR+ K S+AFSLWL+YLR + ++DE++K
Sbjct: 579 REEDAFRVLDQMVKNGCTPSSAVYKCLMTWSCRKGKLSVAFSLWLKYLRSLPSQEDETLK 638
Query: 606 SIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECK 665
EE +KGE+E A++ LLEM+FKLN+F++APYTIWLIGLCQ + +EAL IF VL EC+
Sbjct: 639 LAEEHFEKGELEKAVRCLLEMNFKLNNFEIAPYTIWLIGLCQARRSEEALKIFLVLKECQ 698
Query: 666 AIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVH 725
V PPSCV LI+GLCK G L++A+D+FLYTL+ GF+L PR+CN LLRSL+ +K H
Sbjct: 699 MDVNPPSCVMLINGLCKDGNLEMAVDIFLYTLEKGFMLMPRICNQLLRSLILQ--DKMKH 756
Query: 726 AYHLLCRMKSVGYDLDACLYPKTKSLLPGPWNTREMENMSPG 767
A LL RM S GYDLD L+ + KS L W +EMEN++PG
Sbjct: 757 ALDLLNRMNSAGYDLDEYLHHRIKSYLLSVWKAQEMENVAPG 798
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224086982|ref|XP_002308024.1| predicted protein [Populus trichocarpa] gi|222854000|gb|EEE91547.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 978 bits (2528), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/762 (61%), Positives = 590/762 (77%), Gaps = 2/762 (0%)
Query: 1 ESSTLNEVLTILDTVTPIEPALEPLLPFLSKTTVTSVIMKTKNPQVGFRFFIWAAKRKRL 60
E+S +EV T++ T+ P+EPALEP++PFLS VTS+I NPQ+GFRFFIWA+ KR
Sbjct: 29 ETSISDEVFTVIKTMNPMEPALEPMVPFLSPKIVTSIIQNPPNPQLGFRFFIWASNFKRF 88
Query: 61 RSFASNSAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALES 120
R++ S + +L+ NG +LY QTL+ L++G + V +D FFVLI Y K+G +KA+E+
Sbjct: 89 RAWESCDLITDLLINQNGLELYCQTLEALKNGGIKVHNDAFFVLIKVYLKMGLTDKAMET 148
Query: 121 FGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSK 180
FG M++FDC PDVY YN +L++ +K LLAL VY M+KLNCLPN+ TFS+LI+GL K
Sbjct: 149 FGSMRDFDCTPDVYTYNMILDVLIQKNFLLLALTVYTRMMKLNCLPNVATFSILIDGLCK 208
Query: 181 SGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVA 240
SG + A+ + DEMTQRGILP+ FTY +VISGLC+ R D+AYRLF KMKDSG PDFV
Sbjct: 209 SGNVKDALHLFDEMTQRGILPDAFTYCVVISGLCRSKRVDDAYRLFDKMKDSGVGPDFVT 268
Query: 241 YNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMF 300
NALLNGFC L RVDEA +LLR FEKDG+V + YSCLI GLFRAKRY++ YRKM
Sbjct: 269 CNALLNGFCMLDRVDEAFSLLRLFEKDGYVLDVRGYSCLIRGLFRAKRYEDVQLLYRKMI 328
Query: 301 EEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLD 360
E+ ++PDV LY +M++GL+EAGKV+DA++LL++M E G+VPDT CYN LIKGFCD+GLL
Sbjct: 329 EDNVKPDVYLYTIMMKGLAEAGKVRDALELLNEMTESGVVPDTVCYNVLIKGFCDMGLLS 388
Query: 361 QARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALI 420
+ARSLQ+EI + D PN T++ILI GMCRNG+ DAQ++FN+MEK GC+PS FN+LI
Sbjct: 389 EARSLQLEISRHDCFPNVKTYSILISGMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLI 448
Query: 421 DGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKA 480
DGLCK G+LEKA+LLFYKMEIG+NP+LFLRLSQG + V D ASLQ MVEQ C +GLIHKA
Sbjct: 449 DGLCKTGQLEKAHLLFYKMEIGRNPSLFLRLSQGPSHVLDSASLQKMVEQLCDSGLIHKA 508
Query: 481 YKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLING 540
Y+ILMQLA+SG+ P I TYN L+NGFCK+GN NGA KLF+E+Q KGL PD+VTYGTLING
Sbjct: 509 YRILMQLADSGDAPGIYTYNILVNGFCKLGNFNGAYKLFREMQFKGLSPDTVTYGTLING 568
Query: 541 LQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRD 600
L R REEDA+++F QM +NGCTP AVY+++MTW CRR + AFSLWL+YLR+I ++
Sbjct: 569 LLRFQREEDAYKVFDQMEKNGCTPDAAVYRTMMTWMCRRMELPRAFSLWLKYLRNIRSQE 628
Query: 601 DESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSV 660
DE++K+IE + +K EVE A++GLLEMDFKLNDF L PY IWLIGLCQ +V EAL IF +
Sbjct: 629 DEAIKAIEGYFEKQEVEKAVRGLLEMDFKLNDFDLGPYAIWLIGLCQTRRVGEALKIFLI 688
Query: 661 LVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSK- 719
L E K ++TPP CVKLI+ L K G LD A+DVFLYT++ G++LR RV N +L L+ K
Sbjct: 689 LEEYKVVITPPCCVKLIYFLLKEGDLDRAIDVFLYTIEKGYLLRRRVANRILTKLVRRKG 748
Query: 720 DNKKVHAYHLLCRMKSVGYDLDACLYPKTKSLLPGPWNTREM 761
+ K A +LLCRMKSVGYDLDA L P TKSLL N +EM
Sbjct: 749 EMGKDRAIYLLCRMKSVGYDLDAHLLPWTKSLL-HRHNIQEM 789
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297842741|ref|XP_002889252.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297335093|gb|EFH65511.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 863 bits (2231), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/739 (58%), Positives = 552/739 (74%), Gaps = 13/739 (1%)
Query: 7 EVLTILDTVTPIEPALEPLLPFLSKTTVTSVIMKTKNPQVGFRFFIWAAKRKRLRSFASN 66
EV++IL PIEPALEPL+PFLSK +TSVI + N Q+GFRFFIWA++R+RLRS S
Sbjct: 36 EVISILAKKKPIEPALEPLVPFLSKNIITSVIKEEVNRQLGFRFFIWASRRERLRSGESF 95
Query: 67 SAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESFGKMKE 126
VI ML + NG DLYWQTL+EL+SG VSV S F VLIS Y K+G EKA+ESFG+MKE
Sbjct: 96 GLVIDMLSEDNGCDLYWQTLEELKSGGVSVDSYCFCVLISAYAKMGLAEKAVESFGRMKE 155
Query: 127 FDCQPDVYIYNAVLNIAFRKQLF-LLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTE 185
FDC+PDV+ YN +L I R+ +F +LA AVY EM+K NC PN+ TF +L++GL K G+T
Sbjct: 156 FDCRPDVFTYNVILRIMMREDVFFMLAFAVYNEMLKCNCSPNLYTFGILMDGLYKKGRTS 215
Query: 186 VAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALL 245
A KM D+MT RGI PN+ TYTI+ISGLCQ ++A +LF +MK SG PD VA+NALL
Sbjct: 216 DAQKMFDDMTGRGISPNRVTYTILISGLCQRGSPEDARKLFYEMKASGNYPDSVAHNALL 275
Query: 246 NGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIE 305
+GFCKL R+ EA LLR FEKDGFV L YS LIDGLFRA+RY +A+ Y M + I+
Sbjct: 276 DGFCKLGRMVEAFELLRLFEKDGFVLGLRGYSSLIDGLFRARRYTQAFELYANMLKRNIK 335
Query: 306 PDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSL 365
PD++LY ++I+GLS+AGK++DA+KLL M +GI PDTYCYNA+IK C GLL++ RSL
Sbjct: 336 PDIILYTILIQGLSKAGKIEDALKLLRSMPSKGITPDTYCYNAVIKALCGRGLLEEGRSL 395
Query: 366 QVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCK 425
Q+E+ + +S P+ T TILIC MCRNG+V A+++F ++EK+GC PSV FNALIDGLCK
Sbjct: 396 QLEMSETESFPDACTHTILICSMCRNGLVRKAEEIFLEIEKSGCSPSVATFNALIDGLCK 455
Query: 426 AGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILM 485
+GEL++A LL +KME+G+ +LFLRL+ GNR S TMV+ +G I KAYK L
Sbjct: 456 SGELKEARLLLHKMEVGRPASLFLRLAHSGNR-----SFDTMVQ----SGSILKAYKNLA 506
Query: 486 QLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVD 545
A++GN PDI++YN LINGFC+ G+I+GALKL LQLKGL PDSVTY TLINGL RV
Sbjct: 507 HFADTGNSPDIVSYNVLINGFCREGDIDGALKLLNVLQLKGLSPDSVTYNTLINGLHRVG 566
Query: 546 REEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMK 605
REE+AF++F ++ SPAVY+SLMTWSCRRRK +AF+LW++YL+ IS DDE+
Sbjct: 567 REEEAFKLF--YAKDDFRHSPAVYRSLMTWSCRRRKLLVAFNLWMKYLKKISCLDDETAN 624
Query: 606 SIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECK 665
IE+ ++GE E A++ L+E+D + ++ L PYTIWLIGLCQ G+ EAL +FSVL E K
Sbjct: 625 EIEQCFKEGETERALRRLIELDTRKDELTLGPYTIWLIGLCQSGRFHEALMVFSVLREKK 684
Query: 666 AIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVH 725
+VTPPSCVKLIHGLCKR LD A+DVFLYTL N F L PRVCNYLL SLL S++ ++
Sbjct: 685 ILVTPPSCVKLIHGLCKREQLDAAIDVFLYTLDNNFKLMPRVCNYLLSSLLQSREKMEIV 744
Query: 726 AYHLLCRMKSVGYDLDACL 744
+ L RM+ GYD+D+ L
Sbjct: 745 S-QLTNRMERAGYDVDSML 762
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15219409|ref|NP_178072.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75200774|sp|Q9SAJ5.1|PP133_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g79540 gi|4835755|gb|AAD30222.1|AC007202_4 Contains similarity to gi|2827663 F18F4.190 membrane-associated salt-inducible-like protein from Arabidopsis thaliana BAC gb|AL021637 [Arabidopsis thaliana] gi|332198140|gb|AEE36261.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 850 bits (2196), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/739 (58%), Positives = 555/739 (75%), Gaps = 13/739 (1%)
Query: 7 EVLTILDTVTPIEPALEPLLPFLSKTTVTSVIMKTKNPQVGFRFFIWAAKRKRLRSFASN 66
EV++IL PIEPALEPL+PFLSK +TSVI N Q+GFRFFIWA++R+RLRS S
Sbjct: 36 EVISILAKKKPIEPALEPLVPFLSKNIITSVIKDEVNRQLGFRFFIWASRRERLRSRESF 95
Query: 67 SAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESFGKMKE 126
VI ML + NG DLYWQTL+EL+SG VSV S F VLIS Y K+G EKA+ESFG+MKE
Sbjct: 96 GLVIDMLSEDNGCDLYWQTLEELKSGGVSVDSYCFCVLISAYAKMGMAEKAVESFGRMKE 155
Query: 127 FDCQPDVYIYNAVLNIAFRKQLF-LLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTE 185
FDC+PDV+ YN +L + R+++F +LA AVY EM+K NC PN+ TF +L++GL K G+T
Sbjct: 156 FDCRPDVFTYNVILRVMMREEVFFMLAFAVYNEMLKCNCSPNLYTFGILMDGLYKKGRTS 215
Query: 186 VAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALL 245
A KM D+MT RGI PN+ TYTI+ISGLCQ AD+A +LF +M+ SG PD VA+NALL
Sbjct: 216 DAQKMFDDMTGRGISPNRVTYTILISGLCQRGSADDARKLFYEMQTSGNYPDSVAHNALL 275
Query: 246 NGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIE 305
+GFCKL R+ EA LLR FEKDGFV L YS LIDGLFRA+RY +A+ Y M ++ I+
Sbjct: 276 DGFCKLGRMVEAFELLRLFEKDGFVLGLRGYSSLIDGLFRARRYTQAFELYANMLKKNIK 335
Query: 306 PDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSL 365
PD++LY ++I+GLS+AGK++DA+KLLS M +GI PDTYCYNA+IK C GLL++ RSL
Sbjct: 336 PDIILYTILIQGLSKAGKIEDALKLLSSMPSKGISPDTYCYNAVIKALCGRGLLEEGRSL 395
Query: 366 QVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCK 425
Q+E+ + +S P+ T TILIC MCRNG+V +A+++F ++EK+GC PSV FNALIDGLCK
Sbjct: 396 QLEMSETESFPDACTHTILICSMCRNGLVREAEEIFTEIEKSGCSPSVATFNALIDGLCK 455
Query: 426 AGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILM 485
+GEL++A LL +KME+G+ +LFLRLS GNR S TMVE +G I KAY+ L
Sbjct: 456 SGELKEARLLLHKMEVGRPASLFLRLSHSGNR-----SFDTMVE----SGSILKAYRDLA 506
Query: 486 QLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVD 545
A++G+ PDI++YN LINGFC+ G+I+GALKL LQLKGL PDSVTY TLINGL RV
Sbjct: 507 HFADTGSSPDIVSYNVLINGFCRAGDIDGALKLLNVLQLKGLSPDSVTYNTLINGLHRVG 566
Query: 546 REEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMK 605
REE+AF++F ++ SPAVY+SLMTWSCR+RK +AF+LW++YL+ IS DDE+
Sbjct: 567 REEEAFKLF--YAKDDFRHSPAVYRSLMTWSCRKRKVLVAFNLWMKYLKKISCLDDETAN 624
Query: 606 SIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECK 665
IE+ ++GE E A++ L+E+D + ++ L PYTIWLIGLCQ G+ EAL +FSVL E K
Sbjct: 625 EIEQCFKEGETERALRRLIELDTRKDELTLGPYTIWLIGLCQSGRFHEALMVFSVLREKK 684
Query: 666 AIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVH 725
+VTPPSCVKLIHGLCKR LD A++VFLYTL N F L PRVCNYLL SLL S + ++
Sbjct: 685 ILVTPPSCVKLIHGLCKREQLDAAIEVFLYTLDNNFKLMPRVCNYLLSSLLESTEKMEIV 744
Query: 726 AYHLLCRMKSVGYDLDACL 744
+ L RM+ GY++D+ L
Sbjct: 745 S-QLTNRMERAGYNVDSML 762
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449444522|ref|XP_004140023.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79540-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 818 bits (2114), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/747 (53%), Positives = 534/747 (71%), Gaps = 2/747 (0%)
Query: 3 STLNEVLTILDTVTPIEPALEPLLPFLSKTTVTSVIMKTKNPQVGFRFFIWAAKRKRLRS 62
+T EV TI++T+ P+E L+ + + T+TSV+ + + ++GFR FIW+ K LR
Sbjct: 33 ATSIEVSTIIETLDPMEDGLKVISSRIRSYTITSVLQEQPDTRLGFRLFIWSLKSWHLRC 92
Query: 63 FASNSAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESFG 122
+I L+K N F+LYW+ L EL++ + + S+ F VLI Y + G EKA+ESFG
Sbjct: 93 RTVQDLIIGKLIKENAFELYWKVLQELKNSAIKISSEAFSVLIEAYSEAGMDEKAVESFG 152
Query: 123 KMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSG 182
M++FDC+PD++ +N +L+ RK+ FLLALAVY +M+K N P++VT+ +LI+GL K+
Sbjct: 153 LMRDFDCKPDLFAFNLILHFLVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTC 212
Query: 183 KTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYN 242
KT+ A+ + DEMT RGILPN+ Y+IV+SGLCQ + +A RLF KM+ SGC+ D + YN
Sbjct: 213 KTQDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYN 272
Query: 243 ALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEE 302
LLNGFCK +D+A LL+ KDG + + Y CLI+GLFRA+RY+EA+ WY+KM E
Sbjct: 273 VLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRE 332
Query: 303 KIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQA 362
I+PDV+LY +MIRGLS+ G+V +A+ LL +M ERG+ PDT CYNALIKGFCD+G LD+A
Sbjct: 333 NIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEA 392
Query: 363 RSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDG 422
SL++EI K D PN HT++ILICGMC+NG+++ AQ +F +MEK GC PSV FN+LI+G
Sbjct: 393 ESLRLEISKHDCFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLING 452
Query: 423 LCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYK 482
LCKA LE+A LLFY+MEI + P+LFLRLSQG ++V D ASLQ M+E+ C +G+I KAYK
Sbjct: 453 LCKANRLEEARLLFYQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAYK 512
Query: 483 ILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQ 542
+LMQL +SG LPDI TYN LINGFCK GNINGA KLFKE+QLKG PDSVTYGTLI+GL
Sbjct: 513 LLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLY 572
Query: 543 RVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDE 602
R R EDA IF QM + GC P + YK++MTWSCR SLA S+W++YLRD G +DE
Sbjct: 573 RAGRNEDALEIFEQMVKKGCVPESSTYKTIMTWSCRENNISLALSVWMKYLRDFRGWEDE 632
Query: 603 SMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLV 662
++ + E E++ AI+ LLEMD K +F LAPYTI+LIGL Q + EA IFSVL
Sbjct: 633 KVRVVAESFDNEELQTAIRRLLEMDIKSKNFDLAPYTIFLIGLVQAKRDCEAFAIFSVLK 692
Query: 663 ECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNK 722
+ K ++ SCV LI LC LD+AMDVFL+TL+ GF L P +CN LL +LL ++
Sbjct: 693 DFKMNISSASCVMLIGRLCMVENLDMAMDVFLFTLERGFRLMPPICNQLLCNLLHL--DR 750
Query: 723 KVHAYHLLCRMKSVGYDLDACLYPKTK 749
K A L RM++ GYDL A L+ +TK
Sbjct: 751 KDDALFLANRMEASGYDLGAHLHYRTK 777
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449475988|ref|XP_004154607.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79540-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 806 bits (2081), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/770 (52%), Positives = 539/770 (70%), Gaps = 12/770 (1%)
Query: 3 STLNEVLTILDTVTPIEPALEPLLPFLSKTTVTSVIMKTKNPQVGFRFFIWAAKRKRLRS 62
+T EV TI++T+ P+E L+ + + T+TSV+ + + ++GFR FIW+ K LR
Sbjct: 33 ATSIEVSTIIETLDPMEDGLKVISSRIRSYTITSVLQEQPDTRLGFRLFIWSLKSWHLRC 92
Query: 63 FASNSAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESFG 122
+I L+K N F+LYW+ L EL++ + + S+ F VLI Y + G EKA+ESF
Sbjct: 93 RTVQDLIIGKLIKENAFELYWKVLQELKNSAIKISSEAFSVLIEAYSEAGMDEKAVESFS 152
Query: 123 KMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSG 182
M++FDC+PD++ +N +L+ RK+ FLLALAVY +M+K N P++VT+ +LI+GL K+
Sbjct: 153 LMRDFDCKPDLFAFNLILHFLVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTC 212
Query: 183 KTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYN 242
KT+ A+ + DEMT RGILPN+ Y+IV+SGLCQ + +A RLF KM+ SGC+ D + YN
Sbjct: 213 KTQDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYN 272
Query: 243 ALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEE 302
LLNGFCK +D+A LL+ KDG + + Y CLI+GLFRA+RY+EA+ WY+KM E
Sbjct: 273 VLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRE 332
Query: 303 KIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQA 362
I+PDV+LY +MIRGLS+ G+V +A+ LL +M ERG+ PDT CYNALIKGFCD+G LD+A
Sbjct: 333 NIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEA 392
Query: 363 RSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDG 422
SL++EI K D PN HT++ILICGMC+NG+++ AQ +F +MEK GC PSV FN+LI+G
Sbjct: 393 ESLRLEISKHDCFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFNSLING 452
Query: 423 LCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYK 482
LCKA LE+A LLFY+MEI + P+LFLRLSQG ++V D ASLQ M+E+ C +G+I KAYK
Sbjct: 453 LCKANRLEEARLLFYQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMILKAYK 512
Query: 483 ILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQ 542
+LMQL +SG LPDI TYN LINGFCK GNINGA KLFKE+QLKG PDSVTYGTLI+GL
Sbjct: 513 LLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLY 572
Query: 543 RVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDE 602
R R EDA IF QM + GC P + YK++MTWSCR SLA S+W++YLRD G +DE
Sbjct: 573 RAGRNEDALEIFEQMVKKGCVPESSTYKTIMTWSCRENNISLALSVWMKYLRDFRGWEDE 632
Query: 603 SMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLV 662
++ + E E++ AI+ LLEMD K +F LAPYTI+LIGL Q + EA IFSVL
Sbjct: 633 KVRVVAESFDNEELQTAIRRLLEMDIKSKNFDLAPYTIFLIGLVQAKRDCEAFAIFSVLK 692
Query: 663 ECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNK 722
+ K ++ SCV LI LC LD+AMDVFL+TL+ GF L P +CN LL +LL ++
Sbjct: 693 DFKMNISSASCVMLIGRLCMVENLDMAMDVFLFTLERGFRLMPPICNQLLCNLLHL--DR 750
Query: 723 KVHAYHLLCRMKSVGYDLDACLY--------PKTKSLLPGPWNTREMENM 764
K A L RM++ G +L C++ P +S LP + +M+ +
Sbjct: 751 KDDALFLANRMEASGTEL--CIFIGANCKDIPTNESDLPMQLHRLQMQEL 798
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297739643|emb|CBI29825.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 648 bits (1671), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/764 (46%), Positives = 484/764 (63%), Gaps = 82/764 (10%)
Query: 6 NEVLTILDTVTPIEPALEPLLPFLSKTTVTSVIMKTKNPQVGFRFFIWAAKRKRLRSFAS 65
NEVLT+++TV P+E ALE L PFLS V V+ + + P++GFRFFIW +R+ RS+ +
Sbjct: 39 NEVLTVMETVNPMEDALEKLAPFLSSEIVNDVMREQRRPELGFRFFIWTTRRRSFRSWVT 98
Query: 66 NSAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESFGKMK 125
++ VI ML K +GFD YW+ L+EL++ N+ + F VLI+ Y K G EKA+ESFGKMK
Sbjct: 99 HNLVIDMLAKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVESFGKMK 158
Query: 126 EFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTE 185
+F C+PDV+ YN++L++ +K++FLLALAVY +M+KLN PN TF +L+NGL K+GKT+
Sbjct: 159 DFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTD 218
Query: 186 VAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALL 245
A+KM DEMTQ+GI PN YTI++SGLCQ R D+ +RL MK SGC PD + NALL
Sbjct: 219 DALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALL 278
Query: 246 NGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIE 305
+GFCKL ++DEA ALL+ FEK+G+V + YS LIDGLFRAKRYDE W RKMF+ IE
Sbjct: 279 DGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIE 338
Query: 306 PDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSL 365
PDVVLY ++IRG E G V A+ +L+DM +RG+ PDTYCYNALIKGFCD+GLLD+ARSL
Sbjct: 339 PDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSL 398
Query: 366 QVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCK 425
Q+EI K D P + T+TILICGMCRNG++D+A+++FN+ME GC PS+ FNALIDGLCK
Sbjct: 399 QLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCK 458
Query: 426 AGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILM 485
AGELE+A LFYKMEIGKNP+LFLRLSQG +RV D A+ V++ A+++L
Sbjct: 459 AGELEEARHLFYKMEIGKNPSLFLRLSQGADRVMDTANGFHRVDRE------EDAFRVLD 512
Query: 486 QLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVD 545
Q+ ++G P Y L+ C+ G ++ A L+ LK LR
Sbjct: 513 QMVKNGCTPSSAVYKCLMTWSCRKGKLSVAFSLW----LKYLR-------------SLPS 555
Query: 546 REEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLA-FSLWLQYLRDISGRDDESM 604
+E++ ++ + + G + L+ + + F +A +++WL L + R +E++
Sbjct: 556 QEDETLKLAEEHFEKG--ELEKAVRCLLEMNFKLNNFEIAPYTIWLIGLCQ-ARRSEEAL 612
Query: 605 KSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLI-GLCQDGQVKEALNIFSVLVE 663
K FL E +MD P + LI GLC+DG ++ A++IF +E
Sbjct: 613 KI---FLVLKEC--------QMDVN------PPSCVMLINGLCKDGNLEMAVDIFLYTLE 655
Query: 664 CKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKK 723
+G++ L PR+CN LLRSL+ +K
Sbjct: 656 -------------------KGFM----------------LMPRICNQLLRSLILQ--DKM 678
Query: 724 VHAYHLLCRMKSVGYDLDACLYPKTKSLLPGPWNTREMENMSPG 767
HA LL RM S GYDLD L+ + KS L W +EMEN++PG
Sbjct: 679 KHALDLLNRMNSAGYDLDEYLHHRIKSYLLSVWKAQEMENVAPG 722
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357486821|ref|XP_003613698.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355515033|gb|AES96656.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/709 (47%), Positives = 470/709 (66%), Gaps = 7/709 (0%)
Query: 45 QVGFRFFIWAAKRKRLRSFASNSAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVL 104
Q G RF IW A + S+ V +L N + +YW+ L+ L+ V V SD L
Sbjct: 31 QRGIRFCIWVALKFENLSYEPYCLVNRILFHRNWYSIYWEALELLKKNGVLVTSDSVRAL 90
Query: 105 ISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNC 164
+ Y +G EKA+ESF +M+EF +PD ++YN +L ++L LALA+Y M+K N
Sbjct: 91 VRSYSHMGYTEKAIESFSRMREFGIEPDAHMYNTILRDVLNEKLLELALALYTTMLKSNV 150
Query: 165 LPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYR 224
PN T+++LI+G K G+ + A +MLDEM + GI+P + T ++ G CQ N DEA++
Sbjct: 151 EPNFYTYNMLIDGFCKRGEVKGAQEMLDEMKRVGIVPCVLSTTSILYGCCQANNVDEAHK 210
Query: 225 LFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLF 284
LF MK++ PD ++ N +LNGFCK+ R++EAL+ + + DGF SYS LI+ F
Sbjct: 211 LFNDMKETSYPPDMISCNVVLNGFCKMGRLEEALSFVWMIKNDGFSLNRNSYSSLINAFF 270
Query: 285 RAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTY 344
+A+RY EA+AWY KMF++ I PDVVLY +MIRGLS+ G+V +A K+L +M + G+ PD Y
Sbjct: 271 KARRYREAHAWYTKMFKQGIVPDVVLYAIMIRGLSKEGRVGEAAKMLEEMTQIGLTPDAY 330
Query: 345 CYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKM 404
CYNA+I+G CD+GLL++A+SL++EI S N T TILIC MC+ GMV +AQ+LFN+M
Sbjct: 331 CYNAVIQGLCDVGLLNRAQSLRLEI----SEHNVCTHTILICEMCKRGMVAEAQELFNQM 386
Query: 405 EKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASL 464
EK GC PSV FN LI+GLCKA LEKA LF K+E+G+ +L L LSQG +V D A L
Sbjct: 387 EKLGCEPSVVTFNTLINGLCKANNLEKAKNLFCKLEVGRRHSLHLSLSQGSGQVSDSARL 446
Query: 465 QTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQL 524
++ C AG I +AYK++ LA PDIITYN L+N C +N A F+ LQ
Sbjct: 447 LKKAKEMCEAGQILRAYKLITDLAGEVK-PDIITYNILLNALCMDREVNAAYNFFEFLQK 505
Query: 525 KGL-RPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFS 583
KG PD+VTYGT+I GL VDRE++AF++F +M + G P+ +VY++LMT CR+ K S
Sbjct: 506 KGYPSPDNVTYGTIIKGLFMVDREDEAFKVFQRMQKTGSEPTLSVYRTLMTCLCRKSKVS 565
Query: 584 LAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLI 643
AF+L+ ++L+ + RD++S+ ++E++L ++E I+GLLE+DFK DF+LAPYTI LI
Sbjct: 566 RAFTLYFEHLKSLPSRDNDSISALEKYLFGEKLEQVIRGLLELDFKARDFKLAPYTILLI 625
Query: 644 GLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFIL 703
G CQ G+V EAL I SVL E + SCV LI GLCK L A+ +FLY+L+ GF+L
Sbjct: 626 GFCQAGKVSEALIILSVLDEFNIKINATSCVHLIRGLCKEQRLHDAVKIFLYSLEKGFML 685
Query: 704 RPRVCNYLLRSLLFSKDNKKVHAYHLLCRMKSVGYDLDACLYPKTKSLL 752
+P +CN+LL LL+S+D K+ L+ RM+S GY L++ + T +LL
Sbjct: 686 KPMICNHLLTCLLYSRDYKEC-VVDLIGRMESFGYRLNSEEFATTLALL 733
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357483069|ref|XP_003611821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355513156|gb|AES94779.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 635 bits (1637), Expect = e-179, Method: Compositional matrix adjust.
Identities = 333/709 (46%), Positives = 470/709 (66%), Gaps = 7/709 (0%)
Query: 45 QVGFRFFIWAAKRKRLRSFASNSAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVL 104
Q G RF IW A + S+ V ++ N + +YW+ L+ L+ V V SD L
Sbjct: 31 QRGIRFCIWVALKFENLSYEPYCLVNRIIFHKNWYSIYWEALELLKKNGVLVTSDSVRAL 90
Query: 105 ISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNC 164
+ Y +G EKA+ESF +M+EF +PD ++YN +L ++L LALA+Y M+K N
Sbjct: 91 VRSYSHMGYTEKAIESFSRMREFGIEPDAHMYNTILRDVLNEKLLELALALYTTMLKSNV 150
Query: 165 LPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYR 224
PN T+++LI+G K G+ + A +MLDEM + GI+P + T ++ G CQ N DEA++
Sbjct: 151 EPNFYTYNMLIDGFCKRGEVKGAQEMLDEMKRVGIVPCVLSTTSILYGCCQANNVDEAHK 210
Query: 225 LFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLF 284
LF MK++ PD ++ N +LNGFCK+ R++EAL+ + + DGF SY+ LI+ F
Sbjct: 211 LFNDMKETSYPPDMISCNVVLNGFCKMGRLEEALSFVWMIKNDGFSLNRNSYASLINAFF 270
Query: 285 RAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTY 344
+A+RY EA+A Y KMF+E I PDVVLY +MIRGLS+ G+V +A K+L +M + G+ PD+Y
Sbjct: 271 KARRYREAHACYTKMFKEGIVPDVVLYAIMIRGLSKEGRVGEAAKMLEEMTQIGLTPDSY 330
Query: 345 CYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKM 404
CYNA+I+G CD+ LL++A+SL +EI S N T TILIC MC+ GMV +AQ+LFN+M
Sbjct: 331 CYNAVIQGLCDVDLLNRAQSLSLEI----SEHNVCTHTILICEMCKRGMVAEAQELFNQM 386
Query: 405 EKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASL 464
EK GC PSV FN LI+GLCKA LEKA LF K+E+G+ +L L LSQG +V D A L
Sbjct: 387 EKLGCEPSVVTFNTLINGLCKAKNLEKAKNLFCKLEVGRRHSLHLSLSQGSGQVSDSARL 446
Query: 465 QTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQL 524
++ C AG I +AYK++ LA PDIITYN L+N C +N A F+ LQ
Sbjct: 447 LKKAKEMCEAGQILRAYKLITDLAGEVK-PDIITYNILLNALCMDREVNAAYNFFEFLQK 505
Query: 525 KGL-RPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFS 583
KG PD+VTYGT+I GL VDRE++AF++F +M + G P+ +VY++LMT CR+ K S
Sbjct: 506 KGYPSPDNVTYGTIIKGLFMVDREDEAFKVFQRMQKTGSEPTLSVYRTLMTCLCRKSKVS 565
Query: 584 LAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLI 643
AF+L+L++L+ + RD++S+ ++E++L ++E I+GLLE+DFK DF+LAPYTI LI
Sbjct: 566 RAFTLYLEHLKSLPSRDNDSISTLEKYLFGEKLEQVIRGLLELDFKARDFKLAPYTILLI 625
Query: 644 GLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFIL 703
G CQ G+V EAL I SVL E + SCV LI GLCK L A+ +FLY+L+ GF+L
Sbjct: 626 GFCQAGKVSEALIILSVLDEFNIKINATSCVHLIRGLCKEQRLHDAVKIFLYSLEKGFML 685
Query: 704 RPRVCNYLLRSLLFSKDNKKVHAYHLLCRMKSVGYDLDACLYPKTKSLL 752
+P +CN+LL LL+S+D K+ A L+ RM+S GY L++ + T +LL
Sbjct: 686 KPMICNHLLTCLLYSRDYKEC-AVDLIDRMESFGYRLNSEEFATTLTLL 733
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 767 | ||||||
| TAIR|locus:2206420 | 780 | AT1G79540 [Arabidopsis thalian | 0.954 | 0.938 | 0.581 | 6.3e-227 | |
| TAIR|locus:2015208 | 630 | AT1G63130 [Arabidopsis thalian | 0.607 | 0.739 | 0.331 | 5.1e-67 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.681 | 0.831 | 0.319 | 8.2e-67 | |
| TAIR|locus:2155730 | 915 | AT5G65560 "AT5G65560" [Arabido | 0.829 | 0.695 | 0.275 | 2.8e-66 | |
| TAIR|locus:2015228 | 614 | AT1G63080 [Arabidopsis thalian | 0.667 | 0.833 | 0.316 | 4.5e-66 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.709 | 0.863 | 0.314 | 4.5e-66 | |
| TAIR|locus:2019085 | 763 | AT1G74580 "AT1G74580" [Arabido | 0.857 | 0.862 | 0.276 | 1.4e-64 | |
| TAIR|locus:2083976 | 754 | MEE40 "maternal effect embryo | 0.856 | 0.871 | 0.281 | 2.9e-64 | |
| TAIR|locus:2031301 | 577 | AT1G63400 [Arabidopsis thalian | 0.645 | 0.857 | 0.305 | 2e-63 | |
| TAIR|locus:2174008 | 974 | AT5G61990 "AT5G61990" [Arabido | 0.720 | 0.567 | 0.294 | 3.5e-63 |
| TAIR|locus:2206420 AT1G79540 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2190 (776.0 bits), Expect = 6.3e-227, P = 6.3e-227
Identities = 433/745 (58%), Positives = 557/745 (74%)
Query: 1 ESSTLNEVLTILDTVTPIEPALEPLLPFLSKTTVTSVIMKTKNPQVGFRFFIWAAKRKRL 60
E + EV++IL PIEPALEPL+PFLSK +TSVI N Q+GFRFFIWA++R+RL
Sbjct: 30 EFNISGEVISILAKKKPIEPALEPLVPFLSKNIITSVIKDEVNRQLGFRFFIWASRRERL 89
Query: 61 RSFASNSAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALES 120
RS S VI ML + NG DLYWQTL+EL+SG VSV S F VLIS Y K+G EKA+ES
Sbjct: 90 RSRESFGLVIDMLSEDNGCDLYWQTLEELKSGGVSVDSYCFCVLISAYAKMGMAEKAVES 149
Query: 121 FGKMKEFDCQPDVYIYNAVLNIAFRKQLF-LLALAVYYEMVKLNCLPNIVTFSLLINGLS 179
FG+MKEFDC+PDV+ YN +L + R+++F +LA AVY EM+K NC PN+ TF +L++GL
Sbjct: 150 FGRMKEFDCRPDVFTYNVILRVMMREEVFFMLAFAVYNEMLKCNCSPNLYTFGILMDGLY 209
Query: 180 KSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFV 239
K G+T A KM D+MT RGI PN+ TYTI+ISGLCQ AD+A +LF +M+ SG PD V
Sbjct: 210 KKGRTSDAQKMFDDMTGRGISPNRVTYTILISGLCQRGSADDARKLFYEMQTSGNYPDSV 269
Query: 240 AYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKM 299
A+NALL+GFCKL R+ EA LLR FEKDGFV L YS LIDGLFRA+RY +A+ Y M
Sbjct: 270 AHNALLDGFCKLGRMVEAFELLRLFEKDGFVLGLRGYSSLIDGLFRARRYTQAFELYANM 329
Query: 300 FEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLL 359
++ I+PD++LY ++I+GLS+AGK++DA+KLLS M +GI PDTYCYNA+IK C GLL
Sbjct: 330 LKKNIKPDIILYTILIQGLSKAGKIEDALKLLSSMPSKGISPDTYCYNAVIKALCGRGLL 389
Query: 360 DQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNAL 419
++ RSLQ+E+ + +S P+ T TILIC MCRNG+V +A+++F ++EK+GC PSV FNAL
Sbjct: 390 EEGRSLQLEMSETESFPDACTHTILICSMCRNGLVREAEEIFTEIEKSGCSPSVATFNAL 449
Query: 420 IDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHK 479
IDGLCK+GEL++A LL +KME+G+ +LFLRLS GNR S TMVE +G I K
Sbjct: 450 IDGLCKSGELKEARLLLHKMEVGRPASLFLRLSHSGNR-----SFDTMVE----SGSILK 500
Query: 480 AYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLIN 539
AY+ L A++G+ PDI++YN LINGFC+ G+I+GALKL LQLKGL PDSVTY TLIN
Sbjct: 501 AYRDLAHFADTGSSPDIVSYNVLINGFCRAGDIDGALKLLNVLQLKGLSPDSVTYNTLIN 560
Query: 540 GLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGR 599
GL RV REE+AF++F ++ SPAVY+SLMTWSCR+RK +AF+LW++YL+ IS
Sbjct: 561 GLHRVGREEEAFKLF--YAKDDFRHSPAVYRSLMTWSCRKRKVLVAFNLWMKYLKKISCL 618
Query: 600 DDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFS 659
DDE+ IE+ ++GE E A++ L+E+D + ++ L PYTIWLIGLCQ G+ EAL +FS
Sbjct: 619 DDETANEIEQCFKEGETERALRRLIELDTRKDELTLGPYTIWLIGLCQSGRFHEALMVFS 678
Query: 660 VLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSK 719
VL E K +VTPPSCVKLIHGLCKR LD A++VFLYTL N F L PRVCNYLL SLL S
Sbjct: 679 VLREKKILVTPPSCVKLIHGLCKREQLDAAIEVFLYTLDNNFKLMPRVCNYLLSSLLEST 738
Query: 720 DNKKVHAYHLLCRMKSVGYDLDACL 744
+ ++ + L RM+ GY++D+ L
Sbjct: 739 EKMEIVS-QLTNRMERAGYNVDSML 762
|
|
| TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 681 (244.8 bits), Expect = 5.1e-67, P = 5.1e-67
Identities = 159/479 (33%), Positives = 251/479 (52%)
Query: 101 FFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMV 160
F L+S K+ + + +M+ ++Y Y+ ++N R+ LALAV +M+
Sbjct: 84 FSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMM 143
Query: 161 KLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRAD 220
KL P+IVT + L+NG + A+ ++ +M + G P+ FT+ +I GL + NRA
Sbjct: 144 KLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRAS 203
Query: 221 EAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLI 280
EA L +M GC PD V Y ++NG CK +D AL+LL+ E+ P + Y+ +I
Sbjct: 204 EAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTII 263
Query: 281 DGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIV 340
D L K ++A + +M + I P+VV Y +IR L G+ DA +LLSDM ER I
Sbjct: 264 DALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKIN 323
Query: 341 PDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKL 400
P+ ++ALI F G L +A L E+ KR P+ T++ LI G C + +D+A+ +
Sbjct: 324 PNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHM 383
Query: 401 FNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHD 460
F M CFP+V +N LI G CKA +++ ME LF +SQ G V +
Sbjct: 384 FELMISKDCFPNVVTYNTLIKGFCKAKRVDEG------ME------LFREMSQRG-LVGN 430
Query: 461 KASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFK 520
+ T++ + A A + Q+ G LPDI+TY+ L++G C G + AL +F+
Sbjct: 431 TVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFE 490
Query: 521 ELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRR 579
LQ + PD TY +I G+ + + ED + +F + G P+ Y ++M+ CR+
Sbjct: 491 YLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRK 549
|
|
| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
Identities = 173/541 (31%), Positives = 273/541 (50%)
Query: 39 MKTKNPQVGFRFFIWAAKRKRLRSFASNSAVISMLLKPNGFDLYWQTLDELRSGNVSVVS 98
++ +P R ++A R S + ++ + L + DL+ + + S+V
Sbjct: 26 LRKASPLFSLRGVYFSAASYDYREKLSRNVLLDLKLD-DAVDLFGEMVQSRPLP--SIVE 82
Query: 99 DVFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYE 158
F L+S K+ + + +M+ D+Y YN ++N R+ LALAV +
Sbjct: 83 --FNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGK 140
Query: 159 MVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINR 218
M+KL P+IVT S L+NG + A+ ++D+M PN T+ +I GL N+
Sbjct: 141 MMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNK 200
Query: 219 ADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSC 278
A EA L +M GC PD Y ++NG CK +D AL+LL+ EK + Y+
Sbjct: 201 ASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTT 260
Query: 279 LIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERG 338
+ID L K ++A + +M + I P+VV Y +IR L G+ DA +LLSDM ER
Sbjct: 261 IIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERK 320
Query: 339 IVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQ 398
I P+ ++ALI F G L +A L E+ KR P+ T++ LI G C + +D+A+
Sbjct: 321 INPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAK 380
Query: 399 KLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRV 458
+F M CFP+V +N LI G CKA +E+ ME LF +SQ G V
Sbjct: 381 HMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEG------ME------LFREMSQRG-LV 427
Query: 459 HDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKL 518
+ + T+++ AG A KI ++ G PDIITY+ L++G CK G + AL +
Sbjct: 428 GNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVV 487
Query: 519 FKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCR 578
F+ LQ + PD TY +I G+ + + ED + +F + G P+ +Y ++++ CR
Sbjct: 488 FEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCR 547
Query: 579 R 579
+
Sbjct: 548 K 548
|
|
| TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 647 (232.8 bits), Expect = 2.8e-66, Sum P(2) = 2.8e-66
Identities = 186/674 (27%), Positives = 335/674 (49%)
Query: 20 PALEPLLPFLSKTTVTSVIMKTKNPQVGFRFFIWAAKRKRLR-SFASNSAVISMLLKPNG 78
P+L+ ++ +S + V+S+ +P+ F W ++ R + S S ++++++L+ NG
Sbjct: 79 PSLKSMVSAISPSHVSSLFSLDLDPKTALNFSHWISQNPRYKHSVYSYASLLTLLIN-NG 137
Query: 79 FDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESFGKMKE---FDCQPDVYI 135
+ V VV + ++I VGD L+ KM + F+ + + I
Sbjct: 138 Y--------------VGVVFKIRLLMIKSCDSVGDALYVLDLCRKMNKDERFELKYKLII 183
Query: 136 --YNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDE 193
YN +LN R L VY EM++ PNI T++ ++NG K G E A + + +
Sbjct: 184 GCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSK 243
Query: 194 MTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRR 253
+ + G+ P+ FTYT +I G CQ D A+++F +M GC + VAY L++G C RR
Sbjct: 244 IVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARR 303
Query: 254 VDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGV 313
+DEA+ L + D P + +Y+ LI L ++R EA ++M E I+P++ Y V
Sbjct: 304 IDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTV 363
Query: 314 MIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRD 373
+I L K + A +LL M E+G++P+ YNALI G+C G+++ A + VE+ +
Sbjct: 364 LIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDV-VELMESR 422
Query: 374 SL-PNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKA 432
L PNT T+ LI G C++ V A + NKM + P V +N+LIDG C++G + A
Sbjct: 423 KLSPNTRTYNELIKGYCKSN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSA 481
Query: 433 NLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGN 492
Y++ L L V D+ + +M++ C + + +A + L + G
Sbjct: 482 ----YRL---------LSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGV 528
Query: 493 LPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFR 552
P+++ Y +LI+G+CK G ++ A + +++ K P+S+T+ LI+GL + ++A
Sbjct: 529 NPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATL 588
Query: 553 IFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKS-IEEFL 611
+ +M + G P+ + L+ + F A+S + Q L + D + + I+ +
Sbjct: 589 LEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYC 648
Query: 612 QKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPP 671
++G + +A + +M L Y+ + G GQ A ++ + + +
Sbjct: 649 REGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQH 708
Query: 672 SCVKLIHGLCKRGY 685
+ + LI L + Y
Sbjct: 709 TFLSLIKHLLEMKY 722
|
|
| TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
Identities = 167/528 (31%), Positives = 265/528 (50%)
Query: 101 FFVLISGYYKVGDCEKALESFG-KMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEM 159
F L+S K+ + + SFG KM+ ++Y YN ++N R+ ALA+ +M
Sbjct: 68 FSKLLSAIAKMKKFDLVI-SFGEKMEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKM 126
Query: 160 VKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRA 219
+KL P+IVT + L+NG + A+ ++D+M + G P+ T+T ++ GL Q N+A
Sbjct: 127 MKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKA 186
Query: 220 DEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCL 279
EA L +M GC PD V Y A++NG CK D AL LL EK + YS +
Sbjct: 187 SEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTV 246
Query: 280 IDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGI 339
ID L + + D+A + +M + I PDV Y +I L G+ DA +LLSDM ER I
Sbjct: 247 IDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKI 306
Query: 340 VPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQK 399
P+ +N+LI F G L +A L E+ +R PN T+ LI G C + +D+AQ+
Sbjct: 307 NPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQ 366
Query: 400 LFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVH 459
+F M C P V +N LI+G CKA ++ LF M R GN V
Sbjct: 367 IFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFRDMS---------RRGLVGNTV- 416
Query: 460 DKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLF 519
+ T++ + A A + Q+ G P+I+TYN+L++G CK G + A+ +F
Sbjct: 417 ---TYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVF 473
Query: 520 KELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRR 579
+ LQ + PD TY + G+ + + ED + +F + G P Y ++++ C++
Sbjct: 474 EYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKK 533
Query: 580 RKFSLAFSLWLQYLRDISGRDDESMKS-IEEFLQKGEVENAIQGLLEM 626
A++L+++ D D + + I L+ G+ + + + EM
Sbjct: 534 GLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIKEM 581
|
|
| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
Identities = 177/562 (31%), Positives = 283/562 (50%)
Query: 101 FFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMV 160
F L+S K+ + + +M+ + Y Y+ ++N R+ LALAV +M+
Sbjct: 84 FSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMM 143
Query: 161 KLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRAD 220
KL PNIVT S L+NG S + A+ ++D+M G PN T+ +I GL N+A
Sbjct: 144 KLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKAS 203
Query: 221 EAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLI 280
EA L +M GC PD V Y ++NG CK D A LL E+ P + Y+ +I
Sbjct: 204 EAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTII 263
Query: 281 DGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIV 340
DGL + K D+A +++M + I P+VV Y +I L G+ DA +LLSDM ER I
Sbjct: 264 DGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKIN 323
Query: 341 PDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKL 400
PD + ++ALI F G L +A L E+ KR P+ T++ LI G C + +D+A+++
Sbjct: 324 PDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQM 383
Query: 401 FNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHD 460
F M CFP V +N LI G CK +E+ ME+ F +SQ G V +
Sbjct: 384 FEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEG------MEV------FREMSQRG-LVGN 430
Query: 461 KASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFK 520
+ +++ AG A +I ++ G P+I+TYN+L++G CK G + A+ +F+
Sbjct: 431 TVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFE 490
Query: 521 ELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRR 580
LQ + P TY +I G+ + + ED + +F + G P Y ++++ CR+
Sbjct: 491 YLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKG 550
Query: 581 KFSLAFSLWLQYLRDISGRDDESMKS-IEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYT 639
A +L+ + D + + + I L+ G+ E + + + EM + F T
Sbjct: 551 SKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEM--RSCGFAGDAST 608
Query: 640 IWLI-GLCQDGQV-KEALNIFS 659
I L+ + DG++ K L++ S
Sbjct: 609 IGLVTNMLHDGRLDKSFLDMLS 630
|
|
| TAIR|locus:2019085 AT1G74580 "AT1G74580" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 658 (236.7 bits), Expect = 1.4e-64, P = 1.4e-64
Identities = 189/684 (27%), Positives = 317/684 (46%)
Query: 27 PFLSKTTVTSVIMKTKNPQVGFRFFIWAAKRKRLR-SFASNSAVISMLLKPNGFDLYWQT 85
P L K VT+VI K+P F K + + ++ +VI L F+ +
Sbjct: 4 PLLPKH-VTAVIKCQKDPMKALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAMEEV 62
Query: 86 LDELRS--GNVSVVSDVFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIA 143
L ++R GN ++ V+ + Y + G ++A+ F +M +DC+P V+ YNA++++
Sbjct: 63 LVDMRENVGN-HMLEGVYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVL 121
Query: 144 FRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNK 203
F A VY M P++ +F++ + K+ + A+++L+ M+ +G N
Sbjct: 122 VDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNV 181
Query: 204 FTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRS 263
Y V+ G + N E Y LF KM SG S +N LL CK V E LL
Sbjct: 182 VAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDK 241
Query: 264 FEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGK 323
K G +P L +Y+ I GL + D A + E+ +PDV+ Y +I GL + K
Sbjct: 242 VIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSK 301
Query: 324 VKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTI 383
++A L M G+ PD+Y YN LI G+C G++ A + + +P+ T+
Sbjct: 302 FQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRS 361
Query: 384 LICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGK 443
LI G+C G + A LFN+ G P+V ++N LI GL G + +A L +M
Sbjct: 362 LIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEM---- 417
Query: 444 NPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLI 503
S+ G + + + +V C G + A ++ + G PDI T+N LI
Sbjct: 418 --------SEKG-LIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILI 468
Query: 504 NGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCT 563
+G+ + AL++ + G+ PD TY +L+NGL + + ED + M + GC
Sbjct: 469 HGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCA 528
Query: 564 PSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKS--IEEFLQKGEVENAIQ 621
P+ + L+ CR RK A L L+ +++ S D I+ F + G+++ A
Sbjct: 529 PNLFTFNILLESLCRYRKLDEALGL-LEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYT 587
Query: 622 GLLEMD--FKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKL-IH 678
+M+ +K++ Y I + + V A +F +V+ + + +L +
Sbjct: 588 LFRKMEEAYKVSS-STPTYNIIIHAFTEKLNVTMAEKLFQEMVD-RCLGPDGYTYRLMVD 645
Query: 679 GLCKRGYLDLAMDVFLYTLKNGFI 702
G CK G ++L L ++NGFI
Sbjct: 646 GFCKTGNVNLGYKFLLEMMENGFI 669
|
|
| TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 655 (235.6 bits), Expect = 2.9e-64, P = 2.9e-64
Identities = 194/689 (28%), Positives = 326/689 (47%)
Query: 29 LSKTTVTSVIMKTKNPQ--VGFRFFIWAAKRKRLRSF-ASNSAVISMLLKPNGFDLYWQT 85
LS T V + P R F A+K+ A ++ L + FD +
Sbjct: 46 LSSTDVKLLDSLRSQPDDSAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKI 105
Query: 86 LDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESFGKM-KEFDCQPDVYIYNAVLNIAF 144
L++++S + + F +LI Y + ++ L M EF +PD + YN +LN+
Sbjct: 106 LEDMKSSRCEMGTSTFLILIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLV 165
Query: 145 RKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKF 204
L + +M P++ TF++LI L ++ + AI ML++M G++P++
Sbjct: 166 DGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEK 225
Query: 205 TYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSF 264
T+T V+ G + D A R+ +M + GCS V+ N +++GFCK RV++AL ++
Sbjct: 226 TFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEM 285
Query: 265 E-KDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGK 323
+DGF P +++ L++GL +A A M +E +PDV Y +I GL + G+
Sbjct: 286 SNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGE 345
Query: 324 VKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTI 383
VK+A+++L M R P+T YN LI C +++A L + + LP+ TF
Sbjct: 346 VKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNS 405
Query: 384 LICGMC--RNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEI 441
LI G+C RN V A +LF +M GC P +N LID LC G+L++A + +ME+
Sbjct: 406 LIQGLCLTRNHRV--AMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMEL 463
Query: 442 GKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNS 501
G R + T+++ +C A +A +I ++ G + +TYN+
Sbjct: 464 S-----------GCAR--SVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNT 510
Query: 502 LINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNG 561
LI+G CK + A +L ++ ++G +PD TY +L+ R + A I M NG
Sbjct: 511 LIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNG 570
Query: 562 CTPSPAVYKSLMTWSCRRRKFSLAFSLWLQY-LRDISGRDDESMKSIEEFLQKGEVENAI 620
C P Y +L++ C+ + +A L ++ I+ I+ +K + AI
Sbjct: 571 CEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAI 630
Query: 621 QGLLEMDFKLNDF--QLAPYTIWLIGLCQDG-QVKEALNIFSVLVECKAIVTPPSCVKLI 677
EM + N+ Y I GLC G ++EA++ L+E K V S + ++
Sbjct: 631 NLFREM-LEQNEAPPDAVSYRIVFRGLCNGGGPIREAVDFLVELLE-KGFVPEFSSLYML 688
Query: 678 HGLCKRGYLDLAMDVFLYTLKNGFILRPR 706
G L L+M+ L L N + + R
Sbjct: 689 ----AEGLLTLSMEETLVKLVNMVMQKAR 713
|
|
| TAIR|locus:2031301 AT1G63400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 647 (232.8 bits), Expect = 2.0e-63, P = 2.0e-63
Identities = 156/510 (30%), Positives = 259/510 (50%)
Query: 56 KRKRLRSFASNSAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCE 115
K + L S + ++S + K FDL ++++ +S + +LI+ + +
Sbjct: 78 KSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQIS 137
Query: 116 KALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLI 175
AL GKM + +P + +++LN + A+A+ +MV++ P+ +TF+ LI
Sbjct: 138 LALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLI 197
Query: 176 NGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCS 235
+GL K A+ ++D M QRG PN TY +V++GLC+ D A+ L KM+ +
Sbjct: 198 HGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIE 257
Query: 236 PDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAW 295
+ V Y+ +++ CK R D+AL L E G P + +YS LI L +R+ +A
Sbjct: 258 ANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRL 317
Query: 296 YRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCD 355
M E KI P+VV + +I + GK+ +A KL +M +R I PD + Y++LI GFC
Sbjct: 318 LSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCM 377
Query: 356 LGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGM 415
LD+A+ + + +D PN T+ LI G C+ +D+ +LF +M + G +
Sbjct: 378 HDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVT 437
Query: 416 FNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKA-SLQTMVEQYCTA 474
+ LI G +A + + A ++F +M +S G VH + T+++ C
Sbjct: 438 YTTLIHGFFQARDCDNAQMVFKQM-----------VSDG---VHPNIMTYNTLLDGLCKN 483
Query: 475 GLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTY 534
G + KA + L S P I TYN +I G CK G + LF L LKG++PD + Y
Sbjct: 484 GKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIY 543
Query: 535 GTLINGLQRVDREEDAFRIFGQMPQNGCTP 564
T+I+G R +E+A +F +M ++G P
Sbjct: 544 NTMISGFCRKGLKEEADALFRKMREDGPLP 573
|
|
| TAIR|locus:2174008 AT5G61990 "AT5G61990" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 649 (233.5 bits), Expect = 3.5e-63, P = 3.5e-63
Identities = 172/584 (29%), Positives = 296/584 (50%)
Query: 86 LDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFR 145
L E+ S VS+ + + +LI G K + + A +M Y+Y+ + + +
Sbjct: 300 LVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIKPYMYDCCICVMSK 359
Query: 146 KQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFT 205
+ + A A++ M+ +P ++ LI G + ++L EM +R I+ + +T
Sbjct: 360 EGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLVEMKKRNIVISPYT 419
Query: 206 YTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFE 265
Y V+ G+C D AY + +M SGC P+ V Y L+ F + R +A+ +L+ +
Sbjct: 420 YGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMK 479
Query: 266 KDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVK 325
+ G P + Y+ LI GL +AKR DEA ++ +M E ++P+ YG I G EA +
Sbjct: 480 EQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEASEFA 539
Query: 326 DAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILI 385
A K + +MRE G++P+ LI +C G + +A S + + L + T+T+L+
Sbjct: 540 SADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLM 599
Query: 386 CGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKM-EIGKN 444
G+ +N VDDA+++F +M G P V + LI+G K G ++KA+ +F +M E G
Sbjct: 600 NGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLT 659
Query: 445 PTLFL-RLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLI 503
P + + + GG +C +G I KA ++L +++ G P+ +TY ++I
Sbjct: 660 PNVIIYNMLLGG---------------FCRSGEIEKAKELLDEMSVKGLHPNAVTYCTII 704
Query: 504 NGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCT 563
+G+CK G++ A +LF E++LKGL PDS Y TL++G R++ E A IFG + GC
Sbjct: 705 DGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTN-KKGCA 763
Query: 564 PSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDIS----GR-DDESMKSIEEFLQKGEVEN 618
S A + +L+ W + K L + L L D S G+ +D + + ++L K E
Sbjct: 764 SSTAPFNALINWVFKFGKTELKTEV-LNRLMDGSFDRFGKPNDVTYNIMIDYLCK---EG 819
Query: 619 AIQGLLEMDFKLNDFQLAP----YTIWLIGLCQDGQVKEALNIF 658
++ E+ ++ + L P YT L G + G+ E +F
Sbjct: 820 NLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVF 863
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SAJ5 | PP133_ARATH | No assigned EC number | 0.5845 | 0.9465 | 0.9307 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 767 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-31 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-25 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-23 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-18 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-16 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-15 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-15 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-13 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-11 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-10 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 9e-10 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 7e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 9e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-06 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 5e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 2e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 6e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.003 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 2e-31
Identities = 102/442 (23%), Positives = 189/442 (42%), Gaps = 54/442 (12%)
Query: 176 NGLSKSGKTEVAIKMLDEMTQRGIL--------------------------------PNK 203
N L + G+ + I +L++M +RG+L P
Sbjct: 378 NRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTL 437
Query: 204 FTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRS 263
T+ +++S D A R+ ++++G D Y L++ K +VD +
Sbjct: 438 STFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHE 497
Query: 264 FEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGK 323
G + ++ LIDG RA + +A+ Y M + ++PD V++ +I ++G
Sbjct: 498 MVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGA 557
Query: 324 VKDAMKLLSDMRERG--IVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTF 381
V A +L++M+ I PD AL+K + G +D+A+ + I + + +
Sbjct: 558 VDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVY 617
Query: 382 TILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEI 441
TI + + G D A +++ M+K G P F+AL+D AG+L+KA F ++
Sbjct: 618 TIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKA---FEILQD 674
Query: 442 GKNPTLFLRLSQG---GNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIIT 498
+ QG G + +SL A KA ++ + P + T
Sbjct: 675 AR--------KQGIKLGTVSY--SSLMGAC---SNAKNWKKALELYEDIKSIKLRPTVST 721
Query: 499 YNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMP 558
N+LI C+ + AL++ E++ GL P+++TY L+ +R D + + Q
Sbjct: 722 MNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAK 781
Query: 559 QNGCTPSPAVYKSLMTWSCRRR 580
++G P+ + + + T C RR
Sbjct: 782 EDGIKPNLVMCRCI-TGLCLRR 802
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 1e-25
Identities = 83/327 (25%), Positives = 143/327 (43%), Gaps = 9/327 (2%)
Query: 104 LISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLN 163
LIS K G + E F +M + +V+ + A+++ R A Y M N
Sbjct: 478 LISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN 537
Query: 164 CLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRG--ILPNKFTYTIVISGLC---QINR 218
P+ V F+ LI+ +SG + A +L EM I P+ T ++ Q++R
Sbjct: 538 VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDR 597
Query: 219 ADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSC 278
A E Y++ + G +P+ Y +N + D AL++ +K G P +S
Sbjct: 598 AKEVYQMIHEYNIKG-TPE--VYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSA 654
Query: 279 LIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERG 338
L+D A D+A+ + ++ I+ V Y ++ S A K A++L D++
Sbjct: 655 LVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK 714
Query: 339 IVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQ 398
+ P NALI C+ L +A + E+ + PNT T++IL+ R D
Sbjct: 715 LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGL 774
Query: 399 KLFNKMEKAGCFPSVGMFNALIDGLCK 425
L ++ ++ G P++ M + GLC
Sbjct: 775 DLLSQAKEDGIKPNLVMCRCIT-GLCL 800
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 7e-23
Identities = 94/431 (21%), Positives = 176/431 (40%), Gaps = 70/431 (16%)
Query: 104 LISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVL-------NIAFRKQL-------- 148
+ISGY++ G+C + LE F M+E PD+ +V+ + +++
Sbjct: 259 MISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG 318
Query: 149 FLLALAVYYEMV-----------------KLNCLPNIVTFSLLINGLSKSGKTEVAIKML 191
F + ++V ++ ++ + V+++ +I+G K+G + A++
Sbjct: 319 FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET-KDAVSWTAMISGYEKNGLPDKALETY 377
Query: 192 DEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKL 251
M Q + P++ T V+S + D +L + G V NAL+ + K
Sbjct: 378 ALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC 437
Query: 252 RRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVV-- 309
+ +D+AL + + + + S++ +I GL R EA ++R+M ++P+ V
Sbjct: 438 KCIDKALEVFHNIPEKDVI----SWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTL 492
Query: 310 ---LYGVMIRGLSEAGKVKDAMKLLSDMRERGIVP------------------------- 341
L G GK A L + + G +P
Sbjct: 493 IAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEK 552
Query: 342 DTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLF 401
D +N L+ G+ G A L + + P+ TF L+C R+GMV + F
Sbjct: 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYF 612
Query: 402 NKME-KAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHD 460
+ ME K P++ + ++D L +AG+L +A KM I +P ++ L R+H
Sbjct: 613 HSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNAC-RIHR 671
Query: 461 KASLQTMVEQY 471
L + Q+
Sbjct: 672 HVELGELAAQH 682
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 88.0 bits (218), Expect = 7e-18
Identities = 117/535 (21%), Positives = 208/535 (38%), Gaps = 72/535 (13%)
Query: 99 DVFF--VLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVY 156
D+F VL+ GY K G ++AL + +M +PDVY + VL V+
Sbjct: 151 DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVH 210
Query: 157 YEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQI 216
+V+ ++ + LI K G A + D M +R + ++ +ISG +
Sbjct: 211 AHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCI----SWNAMISGYFEN 266
Query: 217 NRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALAL-LRSFE-KDGFVPRLG 274
E LF M++ PD + ++++ C+L DE L + + K GF +
Sbjct: 267 GECLEGLELFFTMRELSVDPDLMTITSVISA-CELLG-DERLGREMHGYVVKTGFAVDVS 324
Query: 275 SYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDM 334
+ LI + EA K+F D V + MI G + G A++ + M
Sbjct: 325 VCNSLIQMYLSLGSWGEA----EKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALM 380
Query: 335 RERGIVPDTYCYNALIKGFCDLGLLDQARSLQ---------------------------- 366
+ + PD +++ LG LD L
Sbjct: 381 EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCI 440
Query: 367 ---VEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGL 423
+E++ + ++T +I G+ N +A F +M P+ A +
Sbjct: 441 DKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQM-LLTLKPNSVTLIAALSAC 499
Query: 424 CKAGELE-----KANLLFYKMEIGKN---PTLFLRL-----------SQGGNRVHDKASL 464
+ G L A++L + IG + P L L +Q + D S
Sbjct: 500 ARIGALMCGKEIHAHVL--RTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSW 557
Query: 465 QTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQL 524
++ Y G A ++ ++ ESG PD +T+ SL+ + G + L+ F ++
Sbjct: 558 NILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEE 617
Query: 525 K-GLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCR 578
K + P+ Y +++ L R + +A+ +MP TP PAV+ +L+ +CR
Sbjct: 618 KYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLN-ACR 668
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 76.3 bits (189), Expect = 2e-17
Identities = 25/48 (52%), Positives = 38/48 (79%)
Query: 494 PDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGL 541
PD++TYN+LI+G+CK G + ALKLF E++ +G++P+ TY LI+GL
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 73.6 bits (182), Expect = 2e-16
Identities = 24/50 (48%), Positives = 35/50 (70%)
Query: 306 PDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCD 355
PDVV Y +I G + GKV++A+KL ++M++RGI P+ Y Y+ LI G C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 73.2 bits (181), Expect = 2e-16
Identities = 26/50 (52%), Positives = 39/50 (78%)
Query: 166 PNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQ 215
P++VT++ LI+G K GK E A+K+ +EM +RGI PN +TY+I+I GLC+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 72.4 bits (179), Expect = 4e-16
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 201 PNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCK 250
P+ TY +I G C+ + +EA +LF +MK G P+ Y+ L++G CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 72.1 bits (178), Expect = 6e-16
Identities = 25/50 (50%), Positives = 35/50 (70%)
Query: 376 PNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCK 425
P+ T+ LI G C+ G V++A KLFN+M+K G P+V ++ LIDGLCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 80.7 bits (199), Expect = 1e-15
Identities = 114/515 (22%), Positives = 209/515 (40%), Gaps = 68/515 (13%)
Query: 132 DVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKML 191
Y+A++ + AVY+ + P+ + ++ K G A ++
Sbjct: 122 PASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLF 181
Query: 192 DEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKL 251
DEM +R N ++ +I GL EA+ LF +M + G + + +L
Sbjct: 182 DEMPER----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVML------ 231
Query: 252 RRVDEALALLRSFEK-DGFVPRLGSY-----SC-LIDGLFRAKRYDEAYAWYRKMFEEKI 304
R L R+ ++ V + G SC LID + ++A R +F+
Sbjct: 232 -RASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDA----RCVFDGMP 286
Query: 305 EPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARS 364
E V + M+ G + G ++A+ L +MR+ G+ D + ++ +I+ F L LL+ A+
Sbjct: 287 EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQ 346
Query: 365 LQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLC 424
+ + + T L+ + G ++DA+ +F++M + ++ +NALI G
Sbjct: 347 AHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYG 402
Query: 425 KAGELEKANLLFYKM---EIGKNPTLFLR---------LSQGGNRVHDKAS--------- 463
G KA +F +M + N FL LS+ G + S
Sbjct: 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA 462
Query: 464 --LQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYN---SLINGFCKVGNINGALKL 518
M+E GL+ +AY ++ + P T N +L+ C++ N L
Sbjct: 463 MHYACMIELLGREGLLDEAYAMIRR------APFKPTVNMWAALLTA-CRIHK-NLELGR 514
Query: 519 FKELQLKGLRPDSV-TYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTW-S 576
+L G+ P+ + Y L+N R+ +A ++ + + G + PA TW
Sbjct: 515 LAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPAC-----TWIE 569
Query: 577 CRRRKFSLAFSLWLQ-YLRDISGRDDESMKSIEEF 610
+++ S L R+I + DE MK I E+
Sbjct: 570 VKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEY 604
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 78.8 bits (194), Expect = 5e-15
Identities = 85/386 (22%), Positives = 160/386 (41%), Gaps = 59/386 (15%)
Query: 210 ISGLCQINRADEAYRLFLKMKDSGCSPDFVA--YNALLNGFCKLRRVDEALALLRSFEKD 267
I L R EA LF ++ ++GC A Y+AL+ L+ + A+ E
Sbjct: 94 IEKLVACGRHREALELF-EILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESS 152
Query: 268 GFVP-------------------------------RLGSYSCLIDGLFRAKRYDEAYAWY 296
GF P L S+ +I GL A Y EA+A +
Sbjct: 153 GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALF 212
Query: 297 RKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDL 356
R+M+E+ + + + VM+R + G + +L + + G+V DT+ ALI +
Sbjct: 213 REMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKC 272
Query: 357 GLLDQARSLQVEIWKRDSLPNTHT--FTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVG 414
G ++ AR + D +P T + ++ G +G ++A L+ +M +G
Sbjct: 273 GDIEDARCV------FDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF 326
Query: 415 MFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTA 474
F+ +I + LE A + +R + V + A +V+ Y
Sbjct: 327 TFSIMIRIFSRLALLEHAK---------QAHAGLIRTGFPLDIVANTA----LVDLYSKW 373
Query: 475 GLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTY 534
G + A + ++ ++I++N+LI G+ G A+++F+ + +G+ P+ VT+
Sbjct: 374 GRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTF 429
Query: 535 GTLINGLQRVDREEDAFRIFGQMPQN 560
+++ + E + IF M +N
Sbjct: 430 LAVLSACRYSGLSEQGWEIFQSMSEN 455
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 4e-13
Identities = 95/441 (21%), Positives = 169/441 (38%), Gaps = 78/441 (17%)
Query: 175 INGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRA-DEAYRLFLKMKDSG 233
+ L G+ E A+K+L+ M + + ++ Y + LC+ RA +E R+ + S
Sbjct: 58 LRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFR-LCEWKRAVEEGSRVCSRALSSH 116
Query: 234 CSPDFVAYNALLNGFCKLRRVDEALALL-RSFEKDGFVPRLGSYSCLIDGLFRAKRYDEA 292
S NA+L+ F + + A + + E+D F S++ L+ G +A +DEA
Sbjct: 117 PSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLF-----SWNVLVGGYAKAGYFDEA 171
Query: 293 YAWYRKMFEEKIEPDV--------------------------VLYG---------VMIRG 317
Y +M + PDV V +G +I
Sbjct: 172 LCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITM 231
Query: 318 LSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPN 377
+ G V A + M R D +NA+I G+ + G + L + + P+
Sbjct: 232 YVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFTMRELSVDPD 287
Query: 378 THTFTILI--CGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLL 435
T T +I C + G +++ + K G V + N+LI G +A +
Sbjct: 288 LMTITSVISACELL--GDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKV 345
Query: 436 FYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPD 495
F +ME D S M+ Y GL KA + + + PD
Sbjct: 346 FSRME-----------------TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388
Query: 496 IITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFG 555
IT S+++ +G+++ +KL + + KGL V LI + + A +F
Sbjct: 389 EITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFH 448
Query: 556 QMPQNGCTPSPAVYKSLMTWS 576
+P+ K +++W+
Sbjct: 449 NIPE----------KDVISWT 459
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 2e-11
Identities = 57/272 (20%), Positives = 117/272 (43%), Gaps = 44/272 (16%)
Query: 104 LISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLN 163
+++GY G E+AL + +M++ D + ++ ++ I R L A + +++
Sbjct: 296 MLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG 355
Query: 164 CLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAY 223
+IV + L++ SK G+ E A + D M ++ ++ ++ +I+G R +A
Sbjct: 356 FPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLI----SWNALIAGYGNHGRGTKAV 411
Query: 224 RLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKD-GFVPRLGSYSCLIDG 282
+F +M G +P+ V + A+L+ ++ + +S ++ PR Y+C+I+
Sbjct: 412 EMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471
Query: 283 LFRAKRYDEAYAWYRK-----------------------------------MFEEKIEPD 307
L R DEAYA R+ M EK+
Sbjct: 472 LGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNY 531
Query: 308 VVLYGVMIRGLSEAGKVKDAMKLLSDMRERGI 339
VVL + +G+ +A K++ ++ +G+
Sbjct: 532 VVLLNLYNS----SGRQAEAAKVVETLKRKGL 559
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 3e-11
Identities = 89/436 (20%), Positives = 177/436 (40%), Gaps = 75/436 (17%)
Query: 104 LISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLN 163
++S + + G+ A FGKM E D LF
Sbjct: 127 MLSMFVRFGELVHAWYVFGKMPERD-------------------LF-------------- 153
Query: 164 CLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVI---SGLCQINRAD 220
++++L+ G +K+G + A+ + M G+ P+ +T+ V+ G+ + R
Sbjct: 154 ------SWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR 207
Query: 221 EAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLG--SYSC 278
E + ++ G D NAL+ + K V A + F++ +PR S++
Sbjct: 208 EVHAHVVRF---GFELDVDVVNALITMYVKCGDVVSARLV---FDR---MPRRDCISWNA 258
Query: 279 LIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERG 338
+I G F E + M E ++PD++ +I G + ++ + + G
Sbjct: 259 MISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTG 318
Query: 339 IVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQ 398
D N+LI+ + LG +A + + +D++ ++T +I G +NG+ D A
Sbjct: 319 FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAV----SWTAMISGYEKNGLPDKAL 374
Query: 399 KLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRV 458
+ + ME+ P +++ G+L+ L +++ K ++ ++
Sbjct: 375 ETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKL-HELAERKGLISYVVVA------ 427
Query: 459 HDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKL 518
++E Y I KA ++ + E D+I++ S+I G AL
Sbjct: 428 ------NALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIF 477
Query: 519 FKELQLKGLRPDSVTY 534
F+++ L L+P+SVT
Sbjct: 478 FRQMLLT-LKPNSVTL 492
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.5 bits (135), Expect = 4e-10
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 131 PDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSK 180
PDV YN +++ +K AL ++ EM K PN+ T+S+LI+GL K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 54.3 bits (132), Expect = 9e-10
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 275 SYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGL 318
+Y+ LIDG + + +EA + +M + I+P+V Y ++I GL
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 53.9 bits (131), Expect = 9e-10
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 376 PNTHTFTILICGMCRNGMVDDAQKLFNKME 405
P+ T+ LI G+CR G VD+A +L ++ME
Sbjct: 5 PDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 1e-09
Identities = 72/357 (20%), Positives = 138/357 (38%), Gaps = 58/357 (16%)
Query: 242 NALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLI----------DGLFRAKRYDE 291
N+ L C ++++AL LL S ++ +Y L +G R
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 292 AY-----------------------AWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAM 328
++ AWY +F + E D+ + V++ G ++AG +A+
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWY--VFGKMPERDLFSWNVLVGGYAKAGYFDEAL 172
Query: 329 KLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGM 388
L M G+ PD Y + +++ + L + R + + + + LI
Sbjct: 173 CLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMY 232
Query: 389 CRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLF 448
+ G V A+ +F++M + C +NA+I G + GE + LF+ M
Sbjct: 233 VKCGDVVSARLVFDRMPRRDCIS----WNAMISGYFENGECLEGLELFFTMR-------- 280
Query: 449 LRLSQGGNRVHDKASLQTMVEQYCTA-GLIHKAYKILMQLAESGNLPDIITYNSLINGFC 507
V T V C G ++ + ++G D+ NSLI +
Sbjct: 281 ------ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYL 334
Query: 508 KVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTP 564
+G+ A K+F ++ K D+V++ +I+G ++ + A + M Q+ +P
Sbjct: 335 SLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSP 387
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.6 bits (130), Expect = 2e-09
Identities = 24/48 (50%), Positives = 32/48 (66%)
Query: 236 PDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGL 283
PD V YN L++G+CK +V+EAL L +K G P + +YS LIDGL
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 51.6 bits (125), Expect = 5e-09
Identities = 14/32 (43%), Positives = 23/32 (71%)
Query: 490 SGNLPDIITYNSLINGFCKVGNINGALKLFKE 521
G PD++TYN+LI+G C+ G ++ A++L E
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 2e-08
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 466 TMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCK 508
T+++ YC G + +A K+ ++ + G P++ TY+ LI+G CK
Sbjct: 8 TLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 50.4 bits (122), Expect = 2e-08
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 197 RGILPNKFTYTIVISGLCQINRADEAYRLFLKMK 230
+G+ P+ TY +I GLC+ R DEA L +M+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 8e-08
Identities = 53/258 (20%), Positives = 97/258 (37%), Gaps = 82/258 (31%)
Query: 132 DVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKML 191
D ++ NA+L++ R A + K ++V++++L+ G GK +A+++
Sbjct: 523 DGFLPNALLDLYVRCGRMNYAWNQFNSHEK-----DVVSWNILLTGYVAHGKGSMAVELF 577
Query: 192 DEMTQRGILPNKFTYTIVISGLCQINRAD---EAYRLFLKMKDSGCSPDFVAYNALLNGF 248
+ M + G+ P++ T+ IS LC +R+ + F M++
Sbjct: 578 NRMVESGVNPDEVTF---ISLLCACSRSGMVTQGLEYFHSMEE----------------- 617
Query: 249 CKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDV 308
K P L Y+C++D L RA + EAY + KM I PD
Sbjct: 618 -----------------KYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDP 657
Query: 309 VLYGVMIRG----------------------------------LSEAGKVKDAMKLLSDM 334
++G ++ ++AGK + ++ M
Sbjct: 658 AVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTM 717
Query: 335 RERGIVPDTYCYNALIKG 352
RE G+ D C +KG
Sbjct: 718 RENGLTVDPGCSWVEVKG 735
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 2e-07
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 529 PDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCR 578
PD VTY TLI+G + + E+A ++F +M + G P+ Y L+ C+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 3e-07
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 232 SGCSPDFVAYNALLNGFCKLRRVDEALALLR 262
G PD V YN L++G C+ RVDEA+ LL
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLD 31
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 3e-07
Identities = 18/35 (51%), Positives = 27/35 (77%)
Query: 497 ITYNSLINGFCKVGNINGALKLFKELQLKGLRPDS 531
+TYN+LI+G CK G + AL+LFKE++ +G+ PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.8 bits (110), Expect = 6e-07
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 408 GCFPSVGMFNALIDGLCKAGELEKANLLFYKME 440
G P V +N LIDGLC+AG +++A L +ME
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.8 bits (110), Expect = 7e-07
Identities = 13/32 (40%), Positives = 25/32 (78%)
Query: 163 NCLPNIVTFSLLINGLSKSGKTEVAIKMLDEM 194
P++VT++ LI+GL ++G+ + A+++LDEM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 9e-07
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 309 VLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDT 343
V Y +I GL +AG+V++A++L +M+ERGI PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 1e-06
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 204 FTYTIVISGLCQINRADEAYRLFLKMKDSGCSPD 237
TY +I GLC+ R +EA LF +MK+ G PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 1e-06
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 379 HTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSV 413
T+ LI G+C+ G V++A +LF +M++ G P V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 3e-06
Identities = 54/204 (26%), Positives = 76/204 (37%), Gaps = 45/204 (22%)
Query: 103 VLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKL 162
+L++GY G A+E F +M E PD
Sbjct: 559 ILLTGYVAHGKGSMAVELFNRMVESGVNPDE----------------------------- 589
Query: 163 NCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQR-GILPNKFTYTIVISGLCQINRADE 221
VTF L+ S+SG ++ M ++ I PN Y V+ L + + E
Sbjct: 590 ------VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTE 643
Query: 222 AYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDE--ALALLRSFEKDGFVPRLGSYSCL 279
AY KM +PD + ALLN C++ R E LA FE D +G Y L
Sbjct: 644 AYNFINKMP---ITPDPAVWGALLNA-CRIHRHVELGELAAQHIFELDP--NSVGYYILL 697
Query: 280 IDGLFRAKRYDEAYAWYRKMFEEK 303
+ A ++DE A RK E
Sbjct: 698 CNLYADAGKWDEV-ARVRKTMREN 720
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 3e-06
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 103 VLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLN 141
LI GY K G E+AL+ F +MK+ +P+VY Y+ +++
Sbjct: 8 TLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 3e-06
Identities = 18/31 (58%), Positives = 26/31 (83%)
Query: 497 ITYNSLINGFCKVGNINGALKLFKELQLKGL 527
+TYNSLI+G+CK G + AL+LFKE++ KG+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.5 bits (104), Expect = 4e-06
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 525 KGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMP 558
KGL+PD VTY TLI+GL R R ++A + +M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 4e-06
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 275 SYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDV 308
+Y+ LIDGL +A R +EA +++M E IEPDV
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 4e-06
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 380 TFTILICGMCRNGMVDDAQKLFNKMEKAGC 409
T+ LI G C+ G +++A +LF +M++ G
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.7 bits (114), Expect = 5e-06
Identities = 52/264 (19%), Positives = 92/264 (34%), Gaps = 5/264 (1%)
Query: 115 EKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCL-PNIVTFSL 173
AL + + + A L + AL + E ++L L
Sbjct: 5 LLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLL 64
Query: 174 LINGLSKSGKTEVAIKMLDEMTQRGILPNKF-TYTIVISGLCQINRADEAYRLFLKMKDS 232
L L K G+ E A+++L++ + +LPN + L + + +EA L K
Sbjct: 65 LALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALAL 124
Query: 233 GCSPDFVAYNALLNGFCKLRRVDEALALL-RSFEKDGFVPRLG-SYSCLIDGLFRAKRYD 290
PD L +L +EAL L ++ E D + L + L L RY+
Sbjct: 125 DPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYE 184
Query: 291 EAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALI 350
EA K + + D + + GK ++A++ E + L
Sbjct: 185 EALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDP-DNAEALYNLA 243
Query: 351 KGFCDLGLLDQARSLQVEIWKRDS 374
+LG ++A + + D
Sbjct: 244 LLLLELGRYEEALEALEKALELDP 267
|
Length = 291 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 1e-05
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 239 VAYNALLNGFCKLRRVDEALALLRSFEKDGFVP 271
V YN L++G CK RV+EAL L + ++ G P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 2e-05
Identities = 15/32 (46%), Positives = 23/32 (71%)
Query: 304 IEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMR 335
++PDVV Y +I GL AG+V +A++LL +M
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 2e-05
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 204 FTYTIVISGLCQINRADEAYRLFLKMKDSGC 234
TY +ISG C+ + +EA LF +MK+ G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 2e-05
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 496 IITYNSLINGFCKVGNINGALKLFKELQLKGLRP 529
+ TYN+L+ K G+ + AL + +E++ GL+P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 3e-05
Identities = 16/34 (47%), Positives = 26/34 (76%)
Query: 169 VTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPN 202
VT++ LI+GL K+G+ E A+++ EM +RGI P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 6e-05
Identities = 13/31 (41%), Positives = 23/31 (74%)
Query: 169 VTFSLLINGLSKSGKTEVAIKMLDEMTQRGI 199
VT++ LI+G K+GK E A+++ EM ++G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 6e-05
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 378 THTFTILICGMCRNGMVDDAQKLFNKMEKAGCFP 411
T+ L+ + + G D A + +M+ +G P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 7e-05
Identities = 12/31 (38%), Positives = 23/31 (74%)
Query: 309 VLYGVMIRGLSEAGKVKDAMKLLSDMRERGI 339
V Y +I G +AGK+++A++L +M+E+G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 2e-04
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 532 VTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPS 565
VTY TLI+GL + R E+A +F +M + G P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 2e-04
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 239 VAYNALLNGFCKLRRVDEALALLRSFEKDGF 269
V YN+L++G+CK +++EAL L + ++ G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 2e-04
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 308 VVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVP 341
+ Y ++ L++AG A+ +L +M+ G+ P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 5e-04
Identities = 14/26 (53%), Positives = 20/26 (76%)
Query: 415 MFNALIDGLCKAGELEKANLLFYKME 440
+N+LI G CKAG+LE+A LF +M+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMK 27
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.0 bits (94), Expect = 0.001
Identities = 34/161 (21%), Positives = 65/161 (40%), Gaps = 3/161 (1%)
Query: 108 YYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPN 167
+G E+ALE K D PD+ L + + AL +Y + ++L+ N
Sbjct: 105 LEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELN 164
Query: 168 IVTFSLLING--LSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRL 225
+ +LL G L G+ E A+++L++ + + + ++ + +EA
Sbjct: 165 ELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEY 224
Query: 226 FLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEK 266
+ K + + A L +L R +EAL L +
Sbjct: 225 YEKALEL-DPDNAEALYNLALLLLELGRYEEALEALEKALE 264
|
Length = 291 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 15/26 (57%), Positives = 20/26 (76%)
Query: 415 MFNALIDGLCKAGELEKANLLFYKME 440
+N LIDGLCKAG +E+A LF +M+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMK 27
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.002
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 239 VAYNALLNGFCKLRRVDEALALLRSFEKDGFVP 271
YNALL K D ALA+L + G P
Sbjct: 2 ETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.003
Identities = 11/34 (32%), Positives = 23/34 (67%)
Query: 168 IVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILP 201
+ T++ L+ L+K+G ++A+ +L+EM G+ P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 767 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.97 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.96 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.96 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.92 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.92 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.92 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.91 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.91 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.9 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.89 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.89 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.89 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.88 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.87 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.87 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.81 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.8 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.8 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.79 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.77 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.77 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.76 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.75 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.74 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.73 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.73 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.72 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.71 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.7 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.7 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.7 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.69 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.68 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.68 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.68 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.67 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.67 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.65 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.65 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.64 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.62 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.61 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.59 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.58 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.57 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.56 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.54 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.53 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.53 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.52 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.52 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.52 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.52 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.52 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.51 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.51 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.49 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.49 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.49 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.47 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.47 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.45 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.45 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.44 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.44 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.43 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.4 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.4 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.39 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.37 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.37 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.36 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.35 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.35 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.34 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.32 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.29 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.23 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.18 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.17 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.15 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.14 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.14 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.13 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.11 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.11 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.11 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.07 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.07 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.07 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.05 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.05 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.05 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.03 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.03 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 99.02 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.01 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.0 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.0 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.0 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.99 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.99 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.98 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.98 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.95 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.92 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.91 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.88 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.87 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.86 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.82 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.8 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.79 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.79 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.79 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.77 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.74 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.73 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.68 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.68 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.64 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.58 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.51 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.45 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.43 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.42 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.41 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.39 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.39 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.39 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.39 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.38 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.38 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.37 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.36 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.35 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.35 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.32 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.31 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.28 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.28 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.24 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.2 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.15 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.13 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.13 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.1 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.1 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.09 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.06 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.05 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.01 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.01 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.99 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.99 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.99 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.98 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.96 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.94 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.93 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.93 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.92 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.9 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.89 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.85 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 97.85 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.82 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.81 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.79 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.73 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.73 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.72 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.71 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.7 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.67 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.67 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.64 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.64 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.63 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.6 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.6 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.6 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.57 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.57 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 97.53 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.53 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.52 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.52 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.51 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.5 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 97.5 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.49 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 97.49 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.49 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 97.47 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.39 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.38 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.31 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.26 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.26 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.25 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.23 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.23 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.2 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.19 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.17 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.16 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.14 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 97.12 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.11 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.11 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.07 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.03 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.03 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.97 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.94 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.93 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.92 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.85 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 96.85 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 96.85 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.84 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 96.84 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.82 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.77 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.76 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.74 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 96.72 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.71 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.68 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.68 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.62 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 96.57 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.5 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.49 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.42 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.42 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.37 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.29 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.27 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.23 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.2 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 96.17 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.92 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 95.9 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 95.8 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.7 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.7 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.6 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.57 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.55 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 95.53 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.53 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.5 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 95.48 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 95.38 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.26 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 95.23 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.14 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.07 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.06 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.01 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 94.96 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.94 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.92 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.82 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 94.71 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 94.68 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.66 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.59 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.47 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.46 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 94.43 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.36 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.27 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.21 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.1 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 94.02 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.01 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.62 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 93.57 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.4 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 93.35 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.3 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 93.08 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.01 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 92.96 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 92.93 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 92.77 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 92.76 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 92.53 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 92.44 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 92.17 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.05 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 91.99 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 91.92 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 91.77 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 91.73 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 91.72 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 91.62 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 91.6 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 91.48 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 91.42 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 91.39 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 91.33 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 91.13 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 91.1 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.02 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 90.99 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.6 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 90.53 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 90.48 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 90.46 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 90.29 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 90.21 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 90.2 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 89.89 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 89.74 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 89.74 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 89.66 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 89.31 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 89.18 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 89.08 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 88.68 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 88.58 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 88.44 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 87.82 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 87.66 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 87.46 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 87.45 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 87.0 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 86.91 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 86.66 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 86.17 | |
| PRK09687 | 280 | putative lyase; Provisional | 86.1 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 85.85 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 85.27 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 85.03 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 84.14 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 84.09 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 84.08 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 84.04 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 83.18 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 82.98 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 82.93 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 82.44 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 82.3 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 82.21 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 81.48 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 81.29 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 81.05 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 80.95 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 80.9 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 80.86 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 80.79 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 80.29 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 80.26 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 80.23 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 80.02 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 80.01 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-75 Score=658.60 Aligned_cols=666 Identities=18% Similarity=0.203 Sum_probs=603.1
Q ss_pred hcCCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHH
Q 047305 39 MKTKNPQVGFRFFIWAAKRKRLRSFASNSAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKAL 118 (767)
Q Consensus 39 ~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 118 (767)
.+.+....|.++|..+.+.....+..+++.++..+++.|+++.|+++|++|.. ++..+|+.++.+|.+.|++++|+
T Consensus 97 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~ 172 (857)
T PLN03077 97 EWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEAL 172 (857)
T ss_pred hhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHH
Confidence 33445556666666655554444667788899999999999999999999974 56789999999999999999999
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 047305 119 ESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRG 198 (767)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 198 (767)
++|++|...|+.||..+|+.++++|++.+++..+.+++..|.+.|+.||..+++.++.+|++.|+++.|.++|++|..
T Consensus 173 ~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-- 250 (857)
T PLN03077 173 CLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR-- 250 (857)
T ss_pred HHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHH
Q 047305 199 ILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSC 278 (767)
Q Consensus 199 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 278 (767)
||..+||++|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|+.+.+.+++..+.+.|+.||..+|+.
T Consensus 251 --~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~ 328 (857)
T PLN03077 251 --RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNS 328 (857)
T ss_pred --CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 047305 279 LIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGL 358 (767)
Q Consensus 279 li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 358 (767)
|+.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+
T Consensus 329 Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~ 404 (857)
T PLN03077 329 LIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGD 404 (857)
T ss_pred HHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccch
Confidence 9999999999999999999996 468999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047305 359 LDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYK 438 (767)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 438 (767)
++.|.+++..+.+.|..++..+++.|+.+|++.|++++|.++|++|.+ +|..+|+.++.+|++.|++++|+.+|++
T Consensus 405 ~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~ 480 (857)
T PLN03077 405 LDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQ 480 (857)
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999975 6888999999999999999999999999
Q ss_pred hhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 047305 439 MEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKL 518 (767)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 518 (767)
|. ....|+..++..++.++++.|+++.+.+++..+.+.|..++..+++.|+.+|++.|+.++|..+
T Consensus 481 m~--------------~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~ 546 (857)
T PLN03077 481 ML--------------LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQ 546 (857)
T ss_pred HH--------------hCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHH
Confidence 96 3466889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcc--
Q 047305 519 FKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDI-- 596 (767)
Q Consensus 519 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 596 (767)
|+.+ .||..+|+.++.+|.+.|+.++|.++|++|.+.|+.||..||..++.+|.+.|++++|.++|+.|.+..
T Consensus 547 f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi 621 (857)
T PLN03077 547 FNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSI 621 (857)
T ss_pred HHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCC
Confidence 9987 579999999999999999999999999999999999999999999999999999999999999998544
Q ss_pred CCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHH
Q 047305 597 SGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKL 676 (767)
Q Consensus 597 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 676 (767)
.++...+..++..+.+.|+.++|.+.+.++.. .|+ +..|..|+.+|...|+.+.|....+++.+.. |.++..|..+
T Consensus 622 ~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~--~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~-p~~~~~y~ll 697 (857)
T PLN03077 622 TPNLKHYACVVDLLGRAGKLTEAYNFINKMPI--TPD-PAVWGALLNACRIHRHVELGELAAQHIFELD-PNSVGYYILL 697 (857)
T ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHCCC--CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCcchHHHH
Confidence 44556888999999999999999999998853 355 4559999999999999999999999999886 7888999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH----HHHHHhh------cCCccHHHHHHHHHHHHHcCCCCCCc
Q 047305 677 IHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNY----LLRSLLF------SKDNKKVHAYHLLCRMKSVGYDLDAC 743 (767)
Q Consensus 677 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----l~~~l~~------~~~~~~~~a~~~~~~~~~~~~~~~~~ 743 (767)
+++|...|+|++|.++.+.|.+.|+++++...-. -...+.. ...+.+.....+.++|++.||.||..
T Consensus 698 ~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~ 774 (857)
T PLN03077 698 CNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSES 774 (857)
T ss_pred HHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcc
Confidence 9999999999999999999999999988753211 0111110 01122345566788899999999864
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-73 Score=640.06 Aligned_cols=669 Identities=16% Similarity=0.163 Sum_probs=472.3
Q ss_pred HHHHHHhcCCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC
Q 047305 33 TVTSVIMKTKNPQVGFRFFIWAAKRKRLRSFASNSAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVG 112 (767)
Q Consensus 33 ~~~~~l~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 112 (767)
.+...+-+.+++..|+.+|+.+....-.++..+|..++..+.+.+.++.+.+++..+.+.+..++..+++.++..|.+.|
T Consensus 56 ~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g 135 (857)
T PLN03077 56 SQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFG 135 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCC
Confidence 34444555566777777777665544334556666777777777777777777777777666666677777777777777
Q ss_pred ChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 047305 113 DCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLD 192 (767)
Q Consensus 113 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 192 (767)
+.+.|.++|++|. +||..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++++|++.+++..+.+++.
T Consensus 136 ~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~ 211 (857)
T PLN03077 136 ELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHA 211 (857)
T ss_pred ChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHH
Confidence 7777777777775 366777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 047305 193 EMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPR 272 (767)
Q Consensus 193 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 272 (767)
.+.+.|+.||..+++.++.+|++.|++++|..+|++|. .||..+|++++.+|++.|+.++|.++|++|.+.|+.||
T Consensus 212 ~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd 287 (857)
T PLN03077 212 HVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPD 287 (857)
T ss_pred HHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 77777777777777777777777777777777777765 25667777777777777777777777777777777777
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047305 273 LGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKG 352 (767)
Q Consensus 273 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 352 (767)
..+|+.++.+|++.|+.+.|.+++..|.+.|..||..+|+.++.+|++.|++++|.++|++|.. ||..+|+.++.+
T Consensus 288 ~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~ 363 (857)
T PLN03077 288 LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISG 363 (857)
T ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHH
Confidence 7777777777777777777777777777777777777777777777777777777777777643 466677777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 047305 353 FCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKA 432 (767)
Q Consensus 353 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 432 (767)
|.+.|++++|.++|++|.+.+..||..+|+.++.+|++.|+++.|.++++.+.+.|..|+..+++.++.+|++.|++++|
T Consensus 364 ~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A 443 (857)
T PLN03077 364 YEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKA 443 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCH
Q 047305 433 NLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNI 512 (767)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 512 (767)
.++|++|. .++..+|+.++.+|++.|+.++|..+|++|.. +..||..+|+.++.+|++.|+.
T Consensus 444 ~~vf~~m~-----------------~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l 505 (857)
T PLN03077 444 LEVFHNIP-----------------EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGAL 505 (857)
T ss_pred HHHHHhCC-----------------CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchH
Confidence 77777663 13455677777777777777777777777754 3667777777777777777777
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 047305 513 NGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQY 592 (767)
Q Consensus 513 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 592 (767)
+.+.+++..+.+.|+.++..+++.++..|.+.|++++|.++|+.+ .+|..+|+.++.+|++.|+.++|.++|++|
T Consensus 506 ~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M 580 (857)
T PLN03077 506 MCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRM 580 (857)
T ss_pred HHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777665 466777777777777777777777777777
Q ss_pred Hhc-cCCCccchHHHHHHHHhcCCHHHHHHHHHHhh-h-cCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC
Q 047305 593 LRD-ISGRDDESMKSIEEFLQKGEVENAIQGLLEMD-F-KLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVT 669 (767)
Q Consensus 593 ~~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 669 (767)
.+. ..++..++..++.++.+.|..++|.+.+.++. . +..|+ ...|..++.+|++.|++++|.+++++|- ++||
T Consensus 581 ~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~-~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd 656 (857)
T PLN03077 581 VESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN-LKHYACVVDLLGRAGKLTEAYNFINKMP---ITPD 656 (857)
T ss_pred HHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCC
Confidence 643 34455666666777777777777777777654 2 22333 3447777777777777777777777762 4677
Q ss_pred hHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCCCCCc
Q 047305 670 PPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCRMKSVGYDLDAC 743 (767)
Q Consensus 670 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 743 (767)
..+|..|..+|...|+.+.|+...+++++ +.|+......++...+...|+ |++|.++.+.|++.|+.++.+
T Consensus 657 ~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~-~~~a~~vr~~M~~~g~~k~~g 727 (857)
T PLN03077 657 PAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGK-WDEVARVRKTMRENGLTVDPG 727 (857)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCC-hHHHHHHHHHHHHcCCCCCCC
Confidence 77777777777777777777777766665 346665555555555547777 888888888888888887764
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-65 Score=565.56 Aligned_cols=546 Identities=18% Similarity=0.243 Sum_probs=389.7
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047305 96 VVSDVFFVLISGYYKVGDCEKALESFGKMKEFDC-QPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLL 174 (767)
Q Consensus 96 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 174 (767)
.+...|..++..+.+.|++++|+++|++|.+.|+ .++..+++.++.+|.+.|..+.|..+++.|.. ||..+|+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 3445566666666666666666666666666553 34555556666666666666666666666643 666666666
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 047305 175 INGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRV 254 (767)
Q Consensus 175 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 254 (767)
+.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047305 255 DEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFE--EKIEPDVVLYGVMIRGLSEAGKVKDAMKLLS 332 (767)
Q Consensus 255 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 332 (767)
++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .++.||..+|+.++.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666654 3556666666666666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 047305 333 DMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPS 412 (767)
Q Consensus 333 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 412 (767)
+|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|..||..+|+.++.+|++.|++++|.++++.|.+.|+.|+
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 047305 413 VGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGN 492 (767)
Q Consensus 413 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 492 (767)
..+|+.++.+|++.|++++|.++|++| .+.+.
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM------------------------------------------------~~~g~ 715 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDI------------------------------------------------KSIKL 715 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHH------------------------------------------------HHcCC
Confidence 666666666666666665555555554 57778
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHH
Q 047305 493 LPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSL 572 (767)
Q Consensus 493 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 572 (767)
.|+..+|+.||.+|++.|++++|.++|++|...|+.||..+|+.++.+|.+.|++++|.+++..|.+.|+.|+..+|+++
T Consensus 716 ~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsL 795 (1060)
T PLN03218 716 RPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCI 795 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHH
Q 047305 573 MTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVK 652 (767)
Q Consensus 573 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 652 (767)
+..|. +++++|..+.+.++. +. ...+. ...+..+
T Consensus 796 Iglc~--~~y~ka~~l~~~v~~----------------------------f~----~g~~~------------~~n~w~~ 829 (1060)
T PLN03218 796 TGLCL--RRFEKACALGEPVVS----------------------------FD----SGRPQ------------IENKWTS 829 (1060)
T ss_pred HHHHH--HHHHHHhhhhhhhhh----------------------------hh----ccccc------------cccchHH
Confidence 87654 245555554332221 00 00011 1123346
Q ss_pred HHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHH
Q 047305 653 EALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCR 732 (767)
Q Consensus 653 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~ 732 (767)
+|+.+|++|++.|+.||..+|..++.++.+.+..+.+..+++.+...+..|+..+++.++..+. +..++|..++++
T Consensus 830 ~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~----~~~~~A~~l~~e 905 (1060)
T PLN03218 830 WALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFG----EYDPRAFSLLEE 905 (1060)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhc----cChHHHHHHHHH
Confidence 7999999999999999999999999888888889999999888877777777888888888763 213679999999
Q ss_pred HHHcCCCCCCc
Q 047305 733 MKSVGYDLDAC 743 (767)
Q Consensus 733 ~~~~~~~~~~~ 743 (767)
|...|+.|+..
T Consensus 906 m~~~Gi~p~~~ 916 (1060)
T PLN03218 906 AASLGVVPSVS 916 (1060)
T ss_pred HHHcCCCCCcc
Confidence 99999999864
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-64 Score=555.72 Aligned_cols=516 Identities=18% Similarity=0.232 Sum_probs=475.5
Q ss_pred CChhhHHHHHHHHhcCCCchHHHHHHHHHHhCCC-CcCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHH
Q 047305 61 RSFASNSAVISMLLKPNGFDLYWQTLDELRSGNV-SVVSDVFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAV 139 (767)
Q Consensus 61 ~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 139 (767)
++...|..++..+++.|+++.|+++|++|...|+ +++..++..++..|.+.|..++|..+|+.|.. |+..+|+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 4677888899999999999999999999999986 45667778899999999999999999999974 999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCH
Q 047305 140 LNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRA 219 (767)
Q Consensus 140 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 219 (767)
+.+|++.|+++.|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCCcccHHHHHHHHHhcCCHHHHHHHHH
Q 047305 220 DEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEK--DGFVPRLGSYSCLIDGLFRAKRYDEAYAWYR 297 (767)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 297 (767)
++|.++|++|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. .|+.||..+|+.+|.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999976 6789999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 047305 298 KMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPN 377 (767)
Q Consensus 298 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 377 (767)
+|.+.++.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|..|+
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCC
Q 047305 378 THTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNR 457 (767)
Q Consensus 378 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (767)
..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .+.
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~-------------~Gi 750 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR-------------LGL 750 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------------cCC
Confidence 9999999999999999999999999999999999999999999999999999999999999952 456
Q ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----c-------------------CCHHH
Q 047305 458 VHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCK----V-------------------GNING 514 (767)
Q Consensus 458 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~ 514 (767)
.|+..+|..++.+|++.|+++.|.+++.+|.+.|..||..+|+.++..|.+ . +..+.
T Consensus 751 ~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~ 830 (1060)
T PLN03218 751 CPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSW 830 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHH
Confidence 789999999999999999999999999999999999999999999865432 1 12356
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047305 515 ALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLR 594 (767)
Q Consensus 515 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 594 (767)
|+.+|++|.+.|+.||..||+.++.++++.+....+..+++.|...+..|+..+|+.+++++.+. .++|..+|++|.+
T Consensus 831 Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~ 908 (1060)
T PLN03218 831 ALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAAS 908 (1060)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHH
Confidence 77888888888888888888888877777777777777887777666777788888888876322 3578888888874
Q ss_pred c
Q 047305 595 D 595 (767)
Q Consensus 595 ~ 595 (767)
.
T Consensus 909 ~ 909 (1060)
T PLN03218 909 L 909 (1060)
T ss_pred c
Confidence 3
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-60 Score=521.58 Aligned_cols=478 Identities=20% Similarity=0.287 Sum_probs=439.1
Q ss_pred cCHHHHHHHHHHHHhcCChhHHHHHHHHhhhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047305 96 VVSDVFFVLISGYYKVGDCEKALESFGKMKEF-DCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLL 174 (767)
Q Consensus 96 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 174 (767)
.+...|+.++..|.+.|++++|+++|+.|... ++.|+..+|+.++.+|.+.++++.|.+++..|.+.|+.||..+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 45568999999999999999999999999875 47899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 047305 175 INGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRV 254 (767)
Q Consensus 175 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 254 (767)
+.+|++.|+++.|.++|++|.+ ||..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|++.|+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 9999999999999999999975 799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047305 255 DEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDM 334 (767)
Q Consensus 255 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 334 (767)
+.+.+++..+.+.|+.+|..+|+.|+.+|++.|++++|.++|++|. .+|..+||.++.+|++.|++++|+++|++|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999996 459999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 047305 335 RERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVG 414 (767)
Q Consensus 335 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 414 (767)
.+.|+.||..||+.++.+|++.|++++|.+++..+.+.|..|+..+++.|+++|++.|++++|.++|++|.+ ||..
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~ 392 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLI 392 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCee
Confidence 999999999999999999999999999999999999999999999999999999999999999999998864 6888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 047305 415 MFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLP 494 (767)
Q Consensus 415 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 494 (767)
+|+.++.+|++.|+.++|.++|++| .+.|..|
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M------------------------------------------------~~~g~~P 424 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERM------------------------------------------------IAEGVAP 424 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHH------------------------------------------------HHhCCCC
Confidence 9999999998888888877777776 3677889
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHH
Q 047305 495 DIITYNSLINGFCKVGNINGALKLFKELQL-KGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLM 573 (767)
Q Consensus 495 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 573 (767)
|..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++.+|.+.|++++|.+++++|. +.|+..+|..++
T Consensus 425 d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~---~~p~~~~~~~Ll 501 (697)
T PLN03081 425 NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP---FKPTVNMWAALL 501 (697)
T ss_pred CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC---CCCCHHHHHHHH
Confidence 999999999999999999999999999986 5899999999999999999999999999988764 789999999999
Q ss_pred HHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHH
Q 047305 574 TWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKE 653 (767)
Q Consensus 574 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 653 (767)
.+|...|+++.|..+++++++. .|++...|..|+++|++.|++++
T Consensus 502 ~a~~~~g~~~~a~~~~~~l~~~-----------------------------------~p~~~~~y~~L~~~y~~~G~~~~ 546 (697)
T PLN03081 502 TACRIHKNLELGRLAAEKLYGM-----------------------------------GPEKLNNYVVLLNLYNSSGRQAE 546 (697)
T ss_pred HHHHHcCCcHHHHHHHHHHhCC-----------------------------------CCCCCcchHHHHHHHHhCCCHHH
Confidence 9999999999988887666533 36666668888888888888888
Q ss_pred HHHHHHHHHHcCCCCChH
Q 047305 654 ALNIFSVLVECKAIVTPP 671 (767)
Q Consensus 654 A~~~~~~~~~~~~~~~~~ 671 (767)
|.+++++|.+.|+++.+.
T Consensus 547 A~~v~~~m~~~g~~k~~g 564 (697)
T PLN03081 547 AAKVVETLKRKGLSMHPA 564 (697)
T ss_pred HHHHHHHHHHcCCccCCC
Confidence 888888888888766554
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-59 Score=512.13 Aligned_cols=516 Identities=16% Similarity=0.208 Sum_probs=442.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHH
Q 047305 130 QPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLN-CLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTI 208 (767)
Q Consensus 130 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 208 (767)
..+..+|+.++..+.+.|++++|.++|+.|...+ +.||..+|+.++.++++.++++.+..++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4566688888999999999999999999888764 678888999999999988888889999999988888889999999
Q ss_pred HHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC
Q 047305 209 VISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKR 288 (767)
Q Consensus 209 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 288 (767)
++.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|..|+..+|+.++.++++.|.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 99999999999999999988863 68888999999998889999999999998888888888888888888888888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047305 289 YDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVE 368 (767)
Q Consensus 289 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 368 (767)
.+.+.+++..+.+.|..||..+|+.|+.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|+.++|.++|++
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888854 4788888888888888888888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhh
Q 047305 369 IWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLF 448 (767)
Q Consensus 369 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 448 (767)
|.+.|..||..+|+.++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|++.|++++|.++|++|.
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-------- 387 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-------- 387 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC--------
Confidence 888888888888888888888888888888888888888888888888888888888888888888887763
Q ss_pred hhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 047305 449 LRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLR 528 (767)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 528 (767)
.||..+|+.||.+|++.|+.++|+++|++|...|+.
T Consensus 388 --------------------------------------------~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~ 423 (697)
T PLN03081 388 --------------------------------------------RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA 423 (697)
T ss_pred --------------------------------------------CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 468899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHH
Q 047305 529 PDSVTYGTLINGLQRVDREEDAFRIFGQMPQ-NGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSI 607 (767)
Q Consensus 529 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 607 (767)
||..||+.++.+|.+.|.+++|.++|+.|.+ .|+.|+..+|..++++|++.|++++|.++++++ |
T Consensus 424 Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~----~---------- 489 (697)
T PLN03081 424 PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA----P---------- 489 (697)
T ss_pred CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC----C----------
Confidence 9999999999999999999999999999976 689999999999999999999999998876543 1
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChh
Q 047305 608 EEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLD 687 (767)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 687 (767)
..|+. .+|+.|+.+|...|+++.|..+++++.+.+ |.+..+|..++++|.+.|+++
T Consensus 490 ----------------------~~p~~-~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~ 545 (697)
T PLN03081 490 ----------------------FKPTV-NMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQA 545 (697)
T ss_pred ----------------------CCCCH-HHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHH
Confidence 12443 449999999999999999999999998876 667889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHH-HHHHH---HHHh-h-----cCCccHHHHHHHHHHHHHcCCCCCCc
Q 047305 688 LAMDVFLYTLKNGFILRPRV-CNYLL---RSLL-F-----SKDNKKVHAYHLLCRMKSVGYDLDAC 743 (767)
Q Consensus 688 ~A~~~~~~~~~~~~~~~~~~-~~~l~---~~l~-~-----~~~~~~~~a~~~~~~~~~~~~~~~~~ 743 (767)
+|.+++++|.+.|+.+.+.. |..+. ..+. . ...+.++....+.++|.+.||.||..
T Consensus 546 ~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 546 EAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred HHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 99999999999998765542 11100 0000 0 11122567778889999999999965
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=394.34 Aligned_cols=668 Identities=14% Similarity=0.044 Sum_probs=372.8
Q ss_pred HHHHHhcCCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 047305 34 VTSVIMKTKNPQVGFRFFIWAAKRKRLRSFASNSAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGD 113 (767)
Q Consensus 34 ~~~~l~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 113 (767)
...++...+++..|...|+.+....+ .+..++..++.++...|+++.|...++.+.+.. +.++..+......+...|+
T Consensus 199 ~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 276 (899)
T TIGR02917 199 KGDLLLSLGNIELALAAYRKAIALRP-NNPAVLLALATILIEAGEFEEAEKHADALLKKA-PNSPLAHYLKALVDFQKKN 276 (899)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcC
Confidence 34555667788999999988877654 466778888888888899999998888887765 3344444455555667788
Q ss_pred hhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 047305 114 CEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDE 193 (767)
Q Consensus 114 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 193 (767)
+++|+..|+++.+.+ +.+...+..+..++...|+++.|...+.++.+.. +.+...+..+...+.+.|++++|...++.
T Consensus 277 ~~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 354 (899)
T TIGR02917 277 YEDARETLQDALKSA-PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSP 354 (899)
T ss_pred HHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 888888888777644 2223344455556667777777777777776653 34455666666677777777777777777
Q ss_pred HHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc
Q 047305 194 MTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRL 273 (767)
Q Consensus 194 ~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 273 (767)
+..... .+...+..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++.+.+.... ..
T Consensus 355 ~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~ 431 (899)
T TIGR02917 355 ALGLDP-DDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LG 431 (899)
T ss_pred HHhcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-ch
Confidence 665532 255666667777777777777777777766542 224445556666666666777676666666554321 22
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047305 274 GSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGF 353 (767)
Q Consensus 274 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 353 (767)
.....++..+.+.|++++|..+++++....+ .+..++..+...+...|++++|...|+++.+.... +...+..+...+
T Consensus 432 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~ 509 (899)
T TIGR02917 432 RADLLLILSYLRSGQFDKALAAAKKLEKKQP-DNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARID 509 (899)
T ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHH
Confidence 3444455566666666666666666655432 24455566666666666666666666665554322 344455555556
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047305 354 CDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKAN 433 (767)
Q Consensus 354 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 433 (767)
...|++++|...++.+....+ .+..++..+...+.+.|++++|..+++++...+. .+...+..++..+...|++++|.
T Consensus 510 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~ 587 (899)
T TIGR02917 510 IQEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKAL 587 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHH
Confidence 666666666666666655443 3445555555555566666666666665554432 23444555555555566666666
Q ss_pred HHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHH
Q 047305 434 LLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNIN 513 (767)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 513 (767)
.+++++. ...+.+...+..++..+...|++++|...|+++.+.. +.+...+..+..++...|+++
T Consensus 588 ~~~~~~~--------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 652 (899)
T TIGR02917 588 AILNEAA--------------DAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYA 652 (899)
T ss_pred HHHHHHH--------------HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHH
Confidence 6555553 1122334445555555555555555555555554432 123344444555555555555
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047305 514 GALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYL 593 (767)
Q Consensus 514 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 593 (767)
+|...++++.... +.+..++..++..+...|++++|..+++.+.+.. +.+...+..++.++.+.|++++|...|++++
T Consensus 653 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~ 730 (899)
T TIGR02917 653 KAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKAL 730 (899)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5555555554432 1123444445555555555555555555554432 3334444444444555555555555555555
Q ss_pred hccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhH
Q 047305 594 RDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSC 673 (767)
Q Consensus 594 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 673 (767)
+..|.+ ..+..++.++...|++++|.+.+.+... ..|+++.++..++.+|...|++++|+.+|+++++.+ |+++.++
T Consensus 731 ~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~ 807 (899)
T TIGR02917 731 KRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLK-THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVL 807 (899)
T ss_pred hhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 444444 3334445555555555555544444221 134444445555555555555555555555555444 4444455
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHc
Q 047305 674 VKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCRMKSV 736 (767)
Q Consensus 674 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~~ 736 (767)
..+++++...|+ ++|+.++++++.. .|+.......+...+...|+ +++|..+++++.+.
T Consensus 808 ~~l~~~~~~~~~-~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~a~~~ 866 (899)
T TIGR02917 808 NNLAWLYLELKD-PRALEYAEKALKL--APNIPAILDTLGWLLVEKGE-ADRALPLLRKAVNI 866 (899)
T ss_pred HHHHHHHHhcCc-HHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHhh
Confidence 555555555555 4455555555442 23333222222222224444 55555555555543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-41 Score=389.41 Aligned_cols=664 Identities=14% Similarity=0.042 Sum_probs=445.5
Q ss_pred HHHhcCCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChh
Q 047305 36 SVIMKTKNPQVGFRFFIWAAKRKRLRSFASNSAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCE 115 (767)
Q Consensus 36 ~~l~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 115 (767)
.++...++.+.|...|+.+.+..+. +...+.....+....|+++.|...++++.+.+ +.....+..+...+...|+++
T Consensus 235 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~g~~~ 312 (899)
T TIGR02917 235 TILIEAGEFEEAEKHADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQDALKSA-PEYLPALLLAGASEYQLGNLE 312 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHcCCHH
Confidence 3344456677777777766655442 33333334445556677777777777776654 223344445566666777777
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047305 116 KALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMT 195 (767)
Q Consensus 116 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 195 (767)
+|...|+++.+.. +.+...+..+...+.+.|+++.|...++.+.+.. +.+...+..+...+.+.|++++|..+|+++.
T Consensus 313 ~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 390 (899)
T TIGR02917 313 QAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKAT 390 (899)
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7777777776543 4455566666777777777777777777776654 4456667777777777777777777777776
Q ss_pred HCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCccc
Q 047305 196 QRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGS 275 (767)
Q Consensus 196 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 275 (767)
+.... +...+..+...+...|++++|.+.|+.+.+.... .......++..+.+.|++++|..+++++.... +.+..+
T Consensus 391 ~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 467 (899)
T TIGR02917 391 ELDPE-NAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASL 467 (899)
T ss_pred hcCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHH
Confidence 65322 4556666667777777777777777777665322 23344556666777777777777777776543 335566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 047305 276 YSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCD 355 (767)
Q Consensus 276 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 355 (767)
+..+...+...|++++|...|+++.+..+. +...+..++..+...|++++|...++++.+.... +..++..+...+..
T Consensus 468 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 545 (899)
T TIGR02917 468 HNLLGAIYLGKGDLAKAREAFEKALSIEPD-FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPK-NLRAILALAGLYLR 545 (899)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHH
Confidence 777777777777777777777777665433 4555666677777777777777777777665433 56667777777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 047305 356 LGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLL 435 (767)
Q Consensus 356 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 435 (767)
.|+.++|...+..+...++ .+...+..++..|...|++++|..+++.+.+.. +.+..+|..+..++...|++++|...
T Consensus 546 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 623 (899)
T TIGR02917 546 TGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSS 623 (899)
T ss_pred cCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777777766553 445566667777777777777777777776543 23566777777777777777777777
Q ss_pred HHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHH
Q 047305 436 FYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGA 515 (767)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 515 (767)
|+++. ...+.+...+..++..+...|++++|...++++.+.. +.+..++..++..+...|++++|
T Consensus 624 ~~~~~--------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 688 (899)
T TIGR02917 624 FKKLL--------------ALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESA 688 (899)
T ss_pred HHHHH--------------HhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 77764 1223455666677777777777777777777776653 23456677777777777777777
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047305 516 LKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRD 595 (767)
Q Consensus 516 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 595 (767)
..+++.+...+ ..+...+..+...+...|++++|...++.+.+. .|+..++..++.++.+.|++++|.+.++++++.
T Consensus 689 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 765 (899)
T TIGR02917 689 KKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT 765 (899)
T ss_pred HHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 77777777654 234556666677777777777777777777664 344456666677777777777777777777777
Q ss_pred cCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHH
Q 047305 596 ISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVK 675 (767)
Q Consensus 596 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 675 (767)
.|+++.++..++..|...|++++|++.+.++.. ..|+++.++..+++++...|+ .+|+.+++++.+.. |.++..+..
T Consensus 766 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~ 842 (899)
T TIGR02917 766 HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVK-KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDT 842 (899)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHH
Confidence 777777777777777777777777777777432 246666677777777777777 66777777777665 666667777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHHHH
Q 047305 676 LIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCRMK 734 (767)
Q Consensus 676 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~ 734 (767)
++.++...|++++|..+|+++++.+.. ++.++..+...+. ..|+ +++|.+++++|.
T Consensus 843 ~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~-~~g~-~~~A~~~~~~~~ 898 (899)
T TIGR02917 843 LGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALL-ATGR-KAEARKELDKLL 898 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHH-HcCC-HHHHHHHHHHHh
Confidence 777777777777777777777765522 4555555555555 6666 777777777764
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-31 Score=305.94 Aligned_cols=650 Identities=13% Similarity=0.011 Sum_probs=429.1
Q ss_pred HHHHhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHH-------------
Q 047305 70 ISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIY------------- 136 (767)
Q Consensus 70 ~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------------- 136 (767)
+++....++.+.|.+.+.++.... |.++.++..++..+.+.|+.++|.+.+++..+.. +.+....
T Consensus 35 ~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~ 112 (1157)
T PRK11447 35 VRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEG 112 (1157)
T ss_pred HHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCch
Confidence 334444555555555555555443 3345555555555555555555555555555433 2222111
Q ss_pred ---HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 047305 137 ---NAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIV-TFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISG 212 (767)
Q Consensus 137 ---~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 212 (767)
..+...+.+.|++++|.+.|+++.+.+ +++.. ............|+.++|...++++.+.... +...+..+...
T Consensus 113 ~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~l 190 (1157)
T PRK11447 113 RQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLALL 190 (1157)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 112233455555666665555555433 22221 1111111112235555566666555554211 34445555555
Q ss_pred HHccCCHhHHHHHHHHHHHCC------------------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc
Q 047305 213 LCQINRADEAYRLFLKMKDSG------------------CSPD-FVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRL 273 (767)
Q Consensus 213 ~~~~g~~~~a~~~~~~~~~~~------------------~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 273 (767)
+...|+.++|+..++++.... ..+. ...+...+..+-.......|...+.........|..
T Consensus 191 l~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~ 270 (1157)
T PRK11447 191 LFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF 270 (1157)
T ss_pred HHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch
Confidence 555555555665555554321 0110 011111122222222344555666555443222322
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHH------
Q 047305 274 GSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPD-TYCY------ 346 (767)
Q Consensus 274 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~------ 346 (767)
........+...|++++|+..|++.++..+. +...+..+...+.+.|++++|+..|++..+...... ...+
T Consensus 271 -~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~ 348 (1157)
T PRK11447 271 -RARAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKV 348 (1157)
T ss_pred -HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHh
Confidence 1223456778899999999999999987544 778889999999999999999999999887643321 1111
Q ss_pred ------HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047305 347 ------NALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALI 420 (767)
Q Consensus 347 ------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 420 (767)
......+.+.|++++|...++++++..+ .+...+..+...+...|++++|+..|+++.+.... +...+..+.
T Consensus 349 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~ 426 (1157)
T PRK11447 349 NRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLA 426 (1157)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 2234567789999999999999999865 46677888899999999999999999999886532 456677777
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHH
Q 047305 421 DGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYN 500 (767)
Q Consensus 421 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 500 (767)
..|. .+++++|...++.+.... +...... ........+..++..+...|++++|...|+++.+..+. +...+.
T Consensus 427 ~l~~-~~~~~~A~~~l~~l~~~~-~~~~~~~----~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~ 499 (1157)
T PRK11447 427 NLYR-QQSPEKALAFIASLSASQ-RRSIDDI----ERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTY 499 (1157)
T ss_pred HHHH-hcCHHHHHHHHHhCCHHH-HHHHHHH----HHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 7664 467899999887763211 0000000 00111234566788889999999999999999887433 567778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH---------hhHHH
Q 047305 501 SLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSP---------AVYKS 571 (767)
Q Consensus 501 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~~ 571 (767)
.+...|.+.|++++|...++++...... +...+..+...+...++.++|+..++.+......+.. ..+..
T Consensus 500 ~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~ 578 (1157)
T PRK11447 500 RLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLE 578 (1157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHH
Confidence 8899999999999999999999876322 3444555555677889999999999987643222222 12234
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCH
Q 047305 572 LMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQV 651 (767)
Q Consensus 572 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 651 (767)
.+..+...|++++|+.+++ ..|.++..+..++..+.+.|++++|+..+.+... ..|+++.++..++.+|...|++
T Consensus 579 ~a~~l~~~G~~~eA~~~l~----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~-~~P~~~~a~~~la~~~~~~g~~ 653 (1157)
T PRK11447 579 TANRLRDSGKEAEAEALLR----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT-REPGNADARLGLIEVDIAQGDL 653 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHH----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHCCCH
Confidence 5667889999999999876 5799999999999999999999999999998432 3699999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhhcCCccHHHHH
Q 047305 652 KEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRP----RVCNYLLRSLLFSKDNKKVHAY 727 (767)
Q Consensus 652 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~l~~~~~~~~~~a~ 727 (767)
++|++.++++.+.. +.++.++..++.++...|++++|.+++++++.......+ ......+..++...|+ +++|.
T Consensus 654 ~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~-~~~A~ 731 (1157)
T PRK11447 654 AAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQ-PQQAL 731 (1157)
T ss_pred HHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCC-HHHHH
Confidence 99999999998876 677888899999999999999999999999875321111 1222233455558888 99999
Q ss_pred HHHHHHH-HcCCCCCC
Q 047305 728 HLLCRMK-SVGYDLDA 742 (767)
Q Consensus 728 ~~~~~~~-~~~~~~~~ 742 (767)
..+++.. ..|+.|+.
T Consensus 732 ~~y~~Al~~~~~~~~~ 747 (1157)
T PRK11447 732 ETYKDAMVASGITPTR 747 (1157)
T ss_pred HHHHHHHhhcCCCCCC
Confidence 9999976 34555553
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-31 Score=307.25 Aligned_cols=632 Identities=14% Similarity=0.046 Sum_probs=479.2
Q ss_pred HHHhcCCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHhCCCCcCHHHH--------------
Q 047305 36 SVIMKTKNPQVGFRFFIWAAKRKRLRSFASNSAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVF-------------- 101 (767)
Q Consensus 36 ~~l~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~-------------- 101 (767)
++-...++++.|.+.+.-+....+ .+..++..++.++.+.|+.++|.+.++++.+.. |.++...
T Consensus 36 ~~~~~~~~~d~a~~~l~kl~~~~p-~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~~ 113 (1157)
T PRK11447 36 RLGEATHREDLVRQSLYRLELIDP-NNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEGR 113 (1157)
T ss_pred HHHHhhCChHHHHHHHHHHHccCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCchh
Confidence 344556789999999988777654 578899999999999999999999999999886 3444332
Q ss_pred --HHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047305 102 --FVLISGYYKVGDCEKALESFGKMKEFDCQPDVY-IYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGL 178 (767)
Q Consensus 102 --~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 178 (767)
..+.+.+...|++++|++.|+.+.... +|+.. ............|+.++|...++++.+.. +.+...+..+...+
T Consensus 114 ~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll 191 (1157)
T PRK11447 114 QALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLL 191 (1157)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 334457888999999999999998754 44432 21111222234599999999999999875 55677888899999
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCC--hhh-----------------HHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHH
Q 047305 179 SKSGKTEVAIKMLDEMTQRGILPN--KFT-----------------YTIVISGLCQINRADEAYRLFLKMKDSGCSPDFV 239 (767)
Q Consensus 179 ~~~g~~~~A~~~~~~~~~~~~~p~--~~~-----------------~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 239 (767)
...|+.++|+..++++........ ... +...+..+-.......|...+.+.......|+..
T Consensus 192 ~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~ 271 (1157)
T PRK11447 192 FSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR 271 (1157)
T ss_pred HccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH
Confidence 999999999999999876421100 001 1111111222223445555565554432233322
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHH-------
Q 047305 240 AYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPD-VVLY------- 311 (767)
Q Consensus 240 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~------- 311 (767)
. ......+...|++++|+..|++..+... .+..++..+..++.+.|++++|+..|++..+..+... ...|
T Consensus 272 ~-~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 272 A-RAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred H-HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 1 2345667789999999999999988642 3678889999999999999999999999988754322 1112
Q ss_pred -----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047305 312 -----GVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILIC 386 (767)
Q Consensus 312 -----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 386 (767)
......+.+.|++++|+..|+++.+.... +...+..+...+...|++++|++.++++++..+ .+...+..+..
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~ 427 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLAN 427 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 12345677899999999999999987543 667788899999999999999999999998765 45566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCc
Q 047305 387 GMCRNGMVDDAQKLFNKMEKAGCF--------PSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRV 458 (767)
Q Consensus 387 ~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (767)
.|. .++.++|+.+++.+...... .....+..+...+...|++++|+..|++.. ...+
T Consensus 428 l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al--------------~~~P 492 (1157)
T PRK11447 428 LYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRL--------------ALDP 492 (1157)
T ss_pred HHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHH--------------HhCC
Confidence 774 46789999988775432100 012245567778889999999999999986 3345
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-------
Q 047305 459 HDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDS------- 531 (767)
Q Consensus 459 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------- 531 (767)
.++..+..++..+...|++++|...++++.+..+ .+...+..+...+...++.++|+..++.+......++.
T Consensus 493 ~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l 571 (1157)
T PRK11447 493 GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRL 571 (1157)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHH
Confidence 5677888999999999999999999999987643 24555555556677899999999999887543222221
Q ss_pred --hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHH
Q 047305 532 --VTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEE 609 (767)
Q Consensus 532 --~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 609 (767)
..+..++..+...|+.++|+.+++. .+.+...+..+..++.+.|++++|+..|+++++..|+++.++..++.+
T Consensus 572 ~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~ 646 (1157)
T PRK11447 572 QSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEV 646 (1157)
T ss_pred hhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 1234556778899999999999872 355667778899999999999999999999999999999999999999
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCh------HhHHHHHHHHHhc
Q 047305 610 FLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTP------PSCVKLIHGLCKR 683 (767)
Q Consensus 610 ~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~ 683 (767)
|...|++++|++.+..+. ...|+++..+..++.++...|++++|++++++++... ++++ .++..++.++...
T Consensus 647 ~~~~g~~~eA~~~l~~ll-~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-~~~~~~~~~a~~~~~~a~~~~~~ 724 (1157)
T PRK11447 647 DIAQGDLAAARAQLAKLP-ATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA-KSQPPSMESALVLRDAARFEAQT 724 (1157)
T ss_pred HHHCCCHHHHHHHHHHHh-ccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC-ccCCcchhhHHHHHHHHHHHHHc
Confidence 999999999999998753 3468888889999999999999999999999998764 3222 4666789999999
Q ss_pred CChhHHHHHHHHHHH
Q 047305 684 GYLDLAMDVFLYTLK 698 (767)
Q Consensus 684 g~~~~A~~~~~~~~~ 698 (767)
|+.++|+..|++++.
T Consensus 725 G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 725 GQPQQALETYKDAMV 739 (1157)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999999975
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-27 Score=257.42 Aligned_cols=646 Identities=14% Similarity=0.033 Sum_probs=432.5
Q ss_pred CChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHH
Q 047305 42 KNPQVGFRFFIWAAKRKRLRSFASNSAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESF 121 (767)
Q Consensus 42 ~~~~~a~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 121 (767)
+++..|+..|+.+.+..| .+..++..+...+.+.|++++|...+++..+.+ |.+...+..+ ..+ +++.+|+.+|
T Consensus 58 Gd~~~A~~~l~~Al~~dP-~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~i---~~~~kA~~~y 131 (987)
T PRK09782 58 NDEATAIREFEYIHQQVP-DNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AAI---PVEVKSVTTV 131 (987)
T ss_pred CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HHh---ccChhHHHHH
Confidence 677788888888877765 357777888888888888888888888887765 2333333333 222 7788888888
Q ss_pred HHhhhCCCCCCHHHHHHHHHH--------HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCChHHHHHHHH
Q 047305 122 GKMKEFDCQPDVYIYNAVLNI--------AFRKQLFLLALAVYYEMVKLNCLPNIVTFSLL-INGLSKSGKTEVAIKMLD 192 (767)
Q Consensus 122 ~~~~~~~~~~~~~~~~~ll~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~ 192 (767)
+++.... +-+...+..+... |.+. ++|.+.++ .......|+..+.... ...|.+.|+++.|+..+.
T Consensus 132 e~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~ 206 (987)
T PRK09782 132 EELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN 206 (987)
T ss_pred HHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 8887654 3444455444444 4433 44555554 3222223344444444 778888888888888888
Q ss_pred HHHHCCCCCChhhHHHHHHHHHc-cCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-
Q 047305 193 EMTQRGILPNKFTYTIVISGLCQ-INRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFV- 270 (767)
Q Consensus 193 ~~~~~~~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~- 270 (767)
++.+.+.. +......+..+|.. .++ +++..+++. .++-+......++..|.+.|+.++|.++++++...-..
T Consensus 207 ~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 207 EARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 88887543 44446666667776 355 666666443 22346777778888888888888888888876543222
Q ss_pred CCcccHHHHHHHHHhcCCHH-HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 047305 271 PRLGSYSCLIDGLFRAKRYD-EAYAWYRKMFEEKIEPDV-VLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNA 348 (767)
Q Consensus 271 ~~~~~~~~li~~~~~~~~~~-~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 348 (767)
|...++.-+ +.+.+... .|..-|.+ . ..++. ...-.++..+.+.++++.+.++.. +.|.... .
T Consensus 281 ~~~~~~~~~---l~r~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~--~ 345 (987)
T PRK09782 281 AQEKSWLYL---LSKYSANPVQALANYTV--Q--FADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEM--L 345 (987)
T ss_pred CccHHHHHH---HHhccCchhhhccchhh--h--hHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchH--H
Confidence 333333333 33333321 11111111 0 01111 112234677778888886665522 2333332 2
Q ss_pred HHHHHH--hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHH
Q 047305 349 LIKGFC--DLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKA--GCFPSVGMFNALIDGLC 424 (767)
Q Consensus 349 l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~ 424 (767)
.++... ..+...++...+..+.+..+ -+......+.-...+.|+.++|..+++..... +..++......++..|.
T Consensus 346 ~~r~~~~~~~~~~~~~~~~~~~~y~~~~-~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 424 (987)
T PRK09782 346 EERYAVSVATRNKAEALRLARLLYQQEP-ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLE 424 (987)
T ss_pred HHHHhhccccCchhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHH
Confidence 333222 34667777777777776633 35555556666677899999999999988762 12234555668888888
Q ss_pred HcCC---HHHHHHHHHHhhc-----------CCCc--hhhhhhccCCCCcc--hHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047305 425 KAGE---LEKANLLFYKMEI-----------GKNP--TLFLRLSQGGNRVH--DKASLQTMVEQYCTAGLIHKAYKILMQ 486 (767)
Q Consensus 425 ~~~~---~~~A~~~~~~~~~-----------~~~~--~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 486 (767)
+.+. ..++..+-..+.. +..+ ..+.... ...+. +...+..+..++.. ++.++|...+.+
T Consensus 425 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al--~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~ 501 (987)
T PRK09782 425 SHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLL--GDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQ 501 (987)
T ss_pred hCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhc--ccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHH
Confidence 8877 4444444221110 0000 0111111 22334 77788888888887 899999998888
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH
Q 047305 487 LAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSP 566 (767)
Q Consensus 487 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 566 (767)
.... .|+......+...+...|++++|+..|+++... .|+...+..+..++.+.|+.++|..++++.++.+ +...
T Consensus 502 Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~ 576 (987)
T PRK09782 502 AEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDN 576 (987)
T ss_pred HHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccH
Confidence 8776 355444444455567899999999999998665 4555567777888999999999999999998764 3333
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHh
Q 047305 567 AVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLC 646 (767)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~ 646 (767)
..+..+.....+.|++++|...|+++++..|+ +..+..++.++.+.|++++|+..+.+.. ...|+++.++..++.++.
T Consensus 577 ~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL-~l~Pd~~~a~~nLG~aL~ 654 (987)
T PRK09782 577 ALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAAL-ELEPNNSNYQAALGYALW 654 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHH
Confidence 44444444455669999999999999999996 8889999999999999999999998843 246999999999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHH
Q 047305 647 QDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHA 726 (767)
Q Consensus 647 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a 726 (767)
..|++++|++.++++++.. |.++.++..++.++...|++++|+..|+++++. .|+...+..-...+.....+ ++.|
T Consensus 655 ~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~-~~~a 730 (987)
T PRK09782 655 DSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQALITPLTPEQNQQRFN-FRRL 730 (987)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCchhhhhhhHHHHHHHH-HHHH
Confidence 9999999999999999987 889999999999999999999999999999874 47765555444433324444 7777
Q ss_pred HHHHHHHH
Q 047305 727 YHLLCRMK 734 (767)
Q Consensus 727 ~~~~~~~~ 734 (767)
.+-+++..
T Consensus 731 ~~~~~r~~ 738 (987)
T PRK09782 731 HEEVGRRW 738 (987)
T ss_pred HHHHHHHh
Confidence 77766654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-25 Score=247.78 Aligned_cols=617 Identities=11% Similarity=-0.002 Sum_probs=437.3
Q ss_pred HHHHHHHhcCCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHH----
Q 047305 32 TTVTSVIMKTKNPQVGFRFFIWAAKRKRLRSFASNSAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISG---- 107 (767)
Q Consensus 32 ~~~~~~l~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~---- 107 (767)
..+.+.+...+++..|+..++-+.+..+ .+...+..+.. + ++++.|..+++++.... |.+..++..+...
T Consensus 82 ~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~La~-i---~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~ 155 (987)
T PRK09782 82 LYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSLAA-I---PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQ 155 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHHHH-h---ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhcc
Confidence 3355666778899999999988877765 34444444322 2 89999999999999886 5566777666665
Q ss_pred ----HHhcCChhHHHHHHHHhhhCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-c
Q 047305 108 ----YYKVGDCEKALESFGKMKEFDCQPDVYIYNAV-LNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSK-S 181 (767)
Q Consensus 108 ----~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~ 181 (767)
|.+.+...++++ .......|........ .+.|.+.|+++.|+.++.++.+.+ +.+......|..+|.. .
T Consensus 156 ~~l~y~q~eqAl~AL~----lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l 230 (987)
T PRK09782 156 NALRLAQLPVARAQLN----DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQ 230 (987)
T ss_pred chhhhhhHHHHHHHHH----HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhh
Confidence 666655555554 3222234455555555 899999999999999999999987 5566667777788887 4
Q ss_pred CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHH-HHHH
Q 047305 182 GKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCS-PDFVAYNALLNGFCKLRRVD-EALA 259 (767)
Q Consensus 182 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~-~a~~ 259 (767)
++ +.+..++... ++-+...+..+...|.+.|+.++|.++++++...... |+..++..+ +.+.+... .+..
T Consensus 231 ~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~---l~r~~~~~~~~~~ 302 (987)
T PRK09782 231 LD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYL---LSKYSANPVQALA 302 (987)
T ss_pred CH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHH---HHhccCchhhhcc
Confidence 77 7788876542 2348889999999999999999999999998654322 555554433 34444432 1111
Q ss_pred HHHHHHhCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHH
Q 047305 260 LLRSFEKDGFVPR-LGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRG--LSEAGKVKDAMKLLSDMRE 336 (767)
Q Consensus 260 ~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~ 336 (767)
-|.+ . ..++ ......++..+.+.++++.+.++.. +.|.... ..++. ....+...++...++.|.+
T Consensus 303 ~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~ 370 (987)
T PRK09782 303 NYTV--Q--FADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEM--LEERYAVSVATRNKAEALRLARLLYQ 370 (987)
T ss_pred chhh--h--hHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchH--HHHHHhhccccCchhHHHHHHHHHHh
Confidence 1111 0 1111 1123344777788888886655421 1222222 12222 2234667777777777766
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCC---HHHHHHH-----------
Q 047305 337 RGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRD--SLPNTHTFTILICGMCRNGM---VDDAQKL----------- 400 (767)
Q Consensus 337 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~---~~~A~~~----------- 400 (767)
.... +......+.-.....|+.++|..++....... ...+......++..|.+.+. ..++..+
T Consensus 371 ~~~~-~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 449 (987)
T PRK09782 371 QEPA-NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQ 449 (987)
T ss_pred cCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHH
Confidence 5222 45555555555667788888888888877631 12344455567777776655 3333322
Q ss_pred -----------HHHHHHc-CC-CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHH
Q 047305 401 -----------FNKMEKA-GC-FP--SVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQ 465 (767)
Q Consensus 401 -----------~~~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (767)
....... +. ++ +...|..+..++.. +++++|+..+.+.... . ++.....
T Consensus 450 ~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--------------~-Pd~~~~L 513 (987)
T PRK09782 450 WQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--------------Q-PDAWQHR 513 (987)
T ss_pred HHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--------------C-CchHHHH
Confidence 1111111 11 23 56778888877776 8999999988776411 1 2222344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhc
Q 047305 466 TMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDS-VTYGTLINGLQRV 544 (767)
Q Consensus 466 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~ 544 (767)
.++..+...|++++|...|+++... .|+...+..+..++...|+.++|...+++....+ |+. ..+..+...+...
T Consensus 514 ~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~ 589 (987)
T PRK09782 514 AVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIP 589 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhC
Confidence 4555567899999999999998655 3444556677888899999999999999999874 333 3333444455566
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHH
Q 047305 545 DREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLL 624 (767)
Q Consensus 545 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 624 (767)
|++++|...+++.++. .|+...+..+..++.+.|++++|+..|+++++..|+++.++..++.++...|++++|+..+.
T Consensus 590 Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~ 667 (987)
T PRK09782 590 GQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLE 667 (987)
T ss_pred CCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999974 56788999999999999999999999999999999999999999999999999999999988
Q ss_pred HhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 047305 625 EMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILR 704 (767)
Q Consensus 625 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 704 (767)
+.. ...|+++.++..++.++...|++++|+..++++++.. |.+..+....+++..+..+++.|.+.+++... +.|+
T Consensus 668 ~AL-~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~-P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~--~~~~ 743 (987)
T PRK09782 668 RAH-KGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI-DNQALITPLTPEQNQQRFNFRRLHEEVGRRWT--FSFD 743 (987)
T ss_pred HHH-HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh--cCcc
Confidence 842 2469999999999999999999999999999999987 77778888999999999999999999998865 3455
Q ss_pred HH
Q 047305 705 PR 706 (767)
Q Consensus 705 ~~ 706 (767)
..
T Consensus 744 ~~ 745 (987)
T PRK09782 744 SS 745 (987)
T ss_pred ch
Confidence 44
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-27 Score=226.28 Aligned_cols=447 Identities=15% Similarity=0.101 Sum_probs=347.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 047305 241 YNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSE 320 (767)
Q Consensus 241 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 320 (767)
...|..-..+.|++++|++.-..+-..+ +.+......+-..+.+..+.++...--....+..+. -..+|..+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q-~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQ-GAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccch-HHHHHHHHHHHHHH
Confidence 3345555667778888877766554432 123333334445566666666665544444444322 45678888888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHH
Q 047305 321 AGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNT-HTFTILICGMCRNGMVDDAQK 399 (767)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~ 399 (767)
.|++++|+.+++.+.+...+ ....|..+..++...|+.+.|...|.+.++.+ |+. ...+.+...+...|..++|..
T Consensus 129 rg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHH
Confidence 88888888888888876443 56778888888888888888888888887765 332 333444555566788888888
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHH
Q 047305 400 LFNKMEKAGCFPS-VGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIH 478 (767)
Q Consensus 400 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 478 (767)
.+.+..+.. |. ...|..|...+...|+.-.|+..|++.. .-.+.-...|..|...|...+.++
T Consensus 206 cYlkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAv--------------kldP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 206 CYLKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAV--------------KLDPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHHHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhh--------------cCCCcchHHHhhHHHHHHHHhcch
Confidence 887777653 33 4577888888888888888888888875 334455678888888888888999
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 047305 479 KAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPD-SVTYGTLINGLQRVDREEDAFRIFGQM 557 (767)
Q Consensus 479 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~ 557 (767)
.|+..+.++....+ .....+..+...|..+|..+-|+..+++.++. .|+ ...|+.+.+++-..|++.+|.+.|.++
T Consensus 270 ~Avs~Y~rAl~lrp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 270 RAVSCYLRALNLRP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred HHHHHHHHHHhcCC-cchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 99988888876632 24566777888899999999999999999976 555 458999999999999999999999999
Q ss_pred hhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccc
Q 047305 558 PQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAP 637 (767)
Q Consensus 558 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~ 637 (767)
+... +......+.|..+|...|++++|..+|.++++..|.-..+.++++..|.++|+.++|+..+.+.- .+.|.-..+
T Consensus 347 L~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal-rI~P~fAda 424 (966)
T KOG4626|consen 347 LRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL-RIKPTFADA 424 (966)
T ss_pred HHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH-hcCchHHHH
Confidence 8853 44577888899999999999999999999999999999999999999999999999999999832 245888889
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHh
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPR-VCNYLLRSLL 716 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~l~ 716 (767)
|+++|..|-..|+.+.|+..+.+++..+ |--.++...|+.+|-..|+..+|+.-|+.+++ ++||.+ .+..++.++.
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHH
Confidence 9999999999999999999999999987 66677889999999999999999999999987 668854 4555666654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.6e-23 Score=209.58 Aligned_cols=614 Identities=12% Similarity=0.033 Sum_probs=399.8
Q ss_pred cCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC--hhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 047305 75 KPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGD--CEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLA 152 (767)
Q Consensus 75 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A 152 (767)
+...+..|..+|+.+-......++..+..-+- |...|. .+.|...|....+.. ++|+..+-.-.......+++..|
T Consensus 106 k~e~~~~at~~~~~A~ki~m~~~~~l~~~~~~-~l~~~~~~~~~A~a~F~~Vl~~s-p~Nil~LlGkA~i~ynkkdY~~a 183 (1018)
T KOG2002|consen 106 KDELFDKATLLFDLADKIDMYEDSHLLVQRGF-LLLEGDKSMDDADAQFHFVLKQS-PDNILALLGKARIAYNKKDYRGA 183 (1018)
T ss_pred hHHHHHHHHHHhhHHHHhhccCcchhhhhhhh-hhhcCCccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHhccccHHHH
Confidence 33445566666665554433223322222222 222222 578888888777643 55554433333334456788888
Q ss_pred HHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHcc---CCHhHHHHHHH
Q 047305 153 LAVYYEMVKLN--CLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQI---NRADEAYRLFL 227 (767)
Q Consensus 153 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~ 227 (767)
..+|..+.... .+||+.+ .+...+.+.|+.+.|+..|++..+.+. .++.++..|...-... ..+..++.++.
T Consensus 184 l~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~ 260 (1018)
T KOG2002|consen 184 LKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQ 260 (1018)
T ss_pred HHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 88888866543 3344432 233566678888888888888887632 1333333333222222 23455666665
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 047305 228 KMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFV--PRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIE 305 (767)
Q Consensus 228 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~ 305 (767)
..-... .-++...+.|...|.-.|++..+..+...+...... .-...|--+.++|-..|++++|...|.+.......
T Consensus 261 ~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d 339 (1018)
T KOG2002|consen 261 RAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADND 339 (1018)
T ss_pred HHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCC
Confidence 554332 235667777888888888888888888877664311 11244667788888888888888888777766333
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCCCCHHHH
Q 047305 306 PDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLG----LLDQARSLQVEIWKRDSLPNTHTF 381 (767)
Q Consensus 306 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~ 381 (767)
.-...+..+...+.+.|+++.+...|+...+... -+..+...+...|...+ ..+.|..++....+..+ .|...|
T Consensus 340 ~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~-~d~~a~ 417 (1018)
T KOG2002|consen 340 NFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLP-NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTP-VDSEAW 417 (1018)
T ss_pred CccccccchhHHHHHhchHHHHHHHHHHHHHhCc-chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhccc-ccHHHH
Confidence 2233455677888888888888888888877632 25677777777776654 45667777776666543 566777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCC
Q 047305 382 TILICGMCRNGMVDDAQKLFNKME----KAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNR 457 (767)
Q Consensus 382 ~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (767)
-.+...+... ++..++.++..+. ..+..+.+...|.+...+...|.+++|...|......-.+..-.. .+.
T Consensus 418 l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~d----e~~ 492 (1018)
T KOG2002|consen 418 LELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKD----EGK 492 (1018)
T ss_pred HHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcc----ccc
Confidence 7666666544 3333366665543 344446777888888888888888888888887753311110000 111
Q ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 047305 458 VHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDI-ITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGT 536 (767)
Q Consensus 458 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 536 (767)
..+...-..+...+-..++.+.|.+.+..+.+. .|+. ..|..++......+...+|...+......+ .-++..+..
T Consensus 493 ~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl 569 (1018)
T KOG2002|consen 493 STNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSL 569 (1018)
T ss_pred cchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHH
Confidence 122334556677777778888888888888776 3444 344444433345567788888888887653 235555666
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhC-CCCCCHhhHHHHHHHHHh------------cCChhHHHHHHHHHHhccCCCccch
Q 047305 537 LINGLQRVDREEDAFRIFGQMPQN-GCTPSPAVYKSLMTWSCR------------RRKFSLAFSLWLQYLRDISGRDDES 603 (767)
Q Consensus 537 l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~p~~~~~~ 603 (767)
+.+.+.+...+..|..-|..+.+. ...+|..+..+|+..|.+ .+.+++|+++|.++++.+|.|..+-
T Consensus 570 ~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAA 649 (1018)
T KOG2002|consen 570 LGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAA 649 (1018)
T ss_pred HHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhc
Confidence 666777777777777766665542 123566666666665542 3568899999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHH-HcCCCCChHhHHHHHHHHHh
Q 047305 604 MKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLV-ECKAIVTPPSCVKLIHGLCK 682 (767)
Q Consensus 604 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 682 (767)
+.++-+++..|++.+|..+|.++.... .+.+.+|.+++.+|...|+|-.|+++|+... +.....++.+...|+.+++.
T Consensus 650 NGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~ 728 (1018)
T KOG2002|consen 650 NGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYE 728 (1018)
T ss_pred cchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 999999999999999998888865432 2455669999999999999999999999975 44545678888889999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHH
Q 047305 683 RGYLDLAMDVFLYTLKNGFILRPRV 707 (767)
Q Consensus 683 ~g~~~~A~~~~~~~~~~~~~~~~~~ 707 (767)
.|.+.+|.+.+..++... |...+
T Consensus 729 ~~~~~eak~~ll~a~~~~--p~~~~ 751 (1018)
T KOG2002|consen 729 AGKLQEAKEALLKARHLA--PSNTS 751 (1018)
T ss_pred hhhHHHHHHHHHHHHHhC--Cccch
Confidence 999999999999887744 55443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-22 Score=207.53 Aligned_cols=624 Identities=12% Similarity=0.047 Sum_probs=436.1
Q ss_pred CCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHH--HhcCChhHHHHHHHHhhh--CCCCCCHHHHHHHHHHHHHcCCHHH
Q 047305 76 PNGFDLYWQTLDELRSGNVSVVSDVFFVLISGY--YKVGDCEKALESFGKMKE--FDCQPDVYIYNAVLNIAFRKQLFLL 151 (767)
Q Consensus 76 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~g~~~~ 151 (767)
..+++.|...|....... |++. ...+++++ ...++|..|+.+|..... ..++||+.+ .+..++.+.|+.+.
T Consensus 143 ~~~~~~A~a~F~~Vl~~s-p~Ni--l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~ 217 (1018)
T KOG2002|consen 143 DKSMDDADAQFHFVLKQS-PDNI--LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEK 217 (1018)
T ss_pred CccHHHHHHHHHHHHhhC-Ccch--HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhh
Confidence 334678888888888765 3333 33444444 456899999999999764 344566544 44566789999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHH
Q 047305 152 ALAVYYEMVKLNCLPNIVTFSLLINGLSKS---GKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLK 228 (767)
Q Consensus 152 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 228 (767)
|...|.++.+.+ +.++.++..|.-.-... ..+..+..++...-.... -|+...+.|...|...|++..++.+...
T Consensus 218 a~~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~-~nP~~l~~LAn~fyfK~dy~~v~~la~~ 295 (1018)
T KOG2002|consen 218 ALLAFERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENN-ENPVALNHLANHFYFKKDYERVWHLAEH 295 (1018)
T ss_pred HHHHHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcC-CCcHHHHHHHHHHhhcccHHHHHHHHHH
Confidence 999999999875 23333443333332222 345567777776665432 3788899999999999999999999998
Q ss_pred HHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 047305 229 MKDSGCS--PDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEP 306 (767)
Q Consensus 229 ~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~ 306 (767)
+...... .-...|-.+.++|-..|++++|...|.+..+.......-.+--+..+|.+.|+++.+...|+.+.+..+.
T Consensus 296 ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~- 374 (1018)
T KOG2002|consen 296 AIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN- 374 (1018)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc-
Confidence 8765311 1233577799999999999999999998887542222344556789999999999999999999987544
Q ss_pred CHHHHHHHHHHHHhcC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCCH
Q 047305 307 DVVLYGVMIRGLSEAG----KVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIW----KRDSLPNT 378 (767)
Q Consensus 307 ~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~ 378 (767)
+..+...|...|...+ ..+.|..++.+..+.. +.|...|..+...+-... ...+...+..+. ..+..+.+
T Consensus 375 ~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~ 452 (1018)
T KOG2002|consen 375 NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPP 452 (1018)
T ss_pred hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCH
Confidence 6677888888777765 5678888888877764 347888888888776544 444476666554 44555788
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccC
Q 047305 379 HTFTILICGMCRNGMVDDAQKLFNKMEKA---GCFPSVG-MFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQG 454 (767)
Q Consensus 379 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 454 (767)
...|.+...+...|+++.|...|...... ...++.. +.+ +..-...++..+..--+.... ..+..+.
T Consensus 453 E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~--lt~~YNlarl~E~l~~~~~A~-----e~Yk~Il-- 523 (1018)
T KOG2002|consen 453 EVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTN--LTLKYNLARLLEELHDTEVAE-----EMYKSIL-- 523 (1018)
T ss_pred HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccch--hHHHHHHHHHHHhhhhhhHHH-----HHHHHHH--
Confidence 99999999999999999999999998765 1223332 111 111111222222221111111 1111111
Q ss_pred CCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhh
Q 047305 455 GNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLK-GLRPDSVT 533 (767)
Q Consensus 455 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~ 533 (767)
...+.-...+..++.+....+...+|...+....... ..++..+..+...+.+...+..|.+-|+.+... ...+|..+
T Consensus 524 kehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ys 602 (1018)
T KOG2002|consen 524 KEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYS 602 (1018)
T ss_pred HHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhH
Confidence 1122333444444444445578889999999887664 336667777787888888888899888877754 22467777
Q ss_pred HHHHHHHHHh------------cCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCcc
Q 047305 534 YGTLINGLQR------------VDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDD 601 (767)
Q Consensus 534 ~~~l~~~~~~------------~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 601 (767)
...|.+.|.+ .+..++|+++|.++++.. +.+...-+.++-+++..|++.+|..+|.++.+.....++
T Consensus 603 liaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~d 681 (1018)
T KOG2002|consen 603 LIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFED 681 (1018)
T ss_pred HHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCc
Confidence 7788887642 345678999999998764 557778888888899999999999999999988888999
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHH-hhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 047305 602 ESMKSIEEFLQKGEVENAIQGLLE-MDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGL 680 (767)
Q Consensus 602 ~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 680 (767)
+|.+++++|...|++-.|++.+.. +......+++.++..|+.++.+.|++.+|.+.+.+++... |.++.....++-+.
T Consensus 682 v~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~-p~~~~v~FN~a~v~ 760 (1018)
T KOG2002|consen 682 VWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA-PSNTSVKFNLALVL 760 (1018)
T ss_pred eeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-CccchHHhHHHHHH
Confidence 999999999999999999999999 5444456677889999999999999999999999998886 66666544444333
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCC
Q 047305 681 CKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCRMKSVGYD 739 (767)
Q Consensus 681 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~~~~~ 739 (767)
.+. |.. .++ . ...+...+.... ++ .++|..+|++|...+-.
T Consensus 761 kkl-----a~s----~lr-~---~k~t~eev~~a~----~~-le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 761 KKL-----AES----ILR-L---EKRTLEEVLEAV----KE-LEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHH-----HHH----HHh-c---ccccHHHHHHHH----HH-HHHHHHHHHHHHhcCCC
Confidence 322 111 221 1 123444444443 23 78999999999876543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-25 Score=217.97 Aligned_cols=452 Identities=14% Similarity=0.082 Sum_probs=369.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 047305 276 YSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCD 355 (767)
Q Consensus 276 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 355 (767)
...|..-..+.|++.+|++....+-..++. +....-.+-..+.+..+++.....-....+... .-..+|..+...+..
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t-~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~-q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPT-NTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNP-QGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCC-cccceeeehhhhhcccchhhhhhhhhhhhhccc-hHHHHHHHHHHHHHH
Confidence 556777788899999999988877665432 333334444566666777766655544444322 256889999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHcCCHHHHHH
Q 047305 356 LGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMF-NALIDGLCKAGELEKANL 434 (767)
Q Consensus 356 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~ 434 (767)
.|++++|...++.+++..+ .....|..+..++...|+.+.|...|.+..+.+ |+.... ..+...+...|+.++|..
T Consensus 129 rg~~~~al~~y~~aiel~p-~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKP-KFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHH
Confidence 9999999999999999875 567889999999999999999999999988753 554433 344555666899999999
Q ss_pred HHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHH
Q 047305 435 LFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNING 514 (767)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 514 (767)
.+.+.. ...+.-..+|..|...+..+|+...|+..|+++.+..+. -...|..|...|...+.++.
T Consensus 206 cYlkAi--------------~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 206 CYLKAI--------------ETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHHHHH--------------hhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchH
Confidence 998875 234455678899999999999999999999999876322 34678899999999999999
Q ss_pred HHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HhhHHHHHHHHHhcCChhHHHHHHHHH
Q 047305 515 ALKLFKELQLKGLRPDS-VTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPS-PAVYKSLMTWSCRRRKFSLAFSLWLQY 592 (767)
Q Consensus 515 A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 592 (767)
|+..+.+.... .|+. ..+..+...|...|..+-|+..|+++++. .|+ +..|+.+..++...|+..+|...|.++
T Consensus 271 Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 271 AVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred HHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 99999998876 5654 57788888899999999999999999984 454 779999999999999999999999999
Q ss_pred HhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHh
Q 047305 593 LRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPS 672 (767)
Q Consensus 593 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 672 (767)
+...|..+++.++++.+|.+.|+.++|...+.+. ....|.-..+.++|+.+|..+|++++|+..|++++... |.-..+
T Consensus 347 L~l~p~hadam~NLgni~~E~~~~e~A~~ly~~a-l~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~-P~fAda 424 (966)
T KOG4626|consen 347 LRLCPNHADAMNNLGNIYREQGKIEEATRLYLKA-LEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK-PTFADA 424 (966)
T ss_pred HHhCCccHHHHHHHHHHHHHhccchHHHHHHHHH-HhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC-chHHHH
Confidence 9999999999999999999999999998887772 23568888899999999999999999999999999875 555778
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCCCCCc-chhhhh--
Q 047305 673 CVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCRMKSVGYDLDAC-LYPKTK-- 749 (767)
Q Consensus 673 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~-- 749 (767)
+..+|..|-..|+.+.|++.|.+++. ++|.....+..++.+++..|+ ..+|..-++.... ++||.+ .|-.++
T Consensus 425 ~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGn-i~~AI~sY~~aLk--lkPDfpdA~cNllh~ 499 (966)
T KOG4626|consen 425 LSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGN-IPEAIQSYRTALK--LKPDFPDAYCNLLHC 499 (966)
T ss_pred HHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCC-cHHHHHHHHHHHc--cCCCCchhhhHHHHH
Confidence 99999999999999999999999987 558888888899999988998 9999999998774 467754 443332
Q ss_pred hhcCCCCcc
Q 047305 750 SLLPGPWNT 758 (767)
Q Consensus 750 ~~~~~~~~~ 758 (767)
--+.-+|.|
T Consensus 500 lq~vcdw~D 508 (966)
T KOG4626|consen 500 LQIVCDWTD 508 (966)
T ss_pred HHHHhcccc
Confidence 223456765
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.8e-19 Score=179.40 Aligned_cols=658 Identities=14% Similarity=0.084 Sum_probs=399.8
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcC
Q 047305 68 AVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQ 147 (767)
Q Consensus 68 ~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 147 (767)
..+..+...|+++.|..++.++.+.. |..+..|..|...|-..|+.+++...+-.+.... +.|...|..+.....+.|
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcc
Confidence 34445667799999999999999987 6788999999999999999999999988777655 677789999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhH----HHHHHHHHccCCHhHHH
Q 047305 148 LFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTY----TIVISGLCQINRADEAY 223 (767)
Q Consensus 148 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~----~~li~~~~~~g~~~~a~ 223 (767)
++.+|.-.|.++++.. +++....-.-...|-+.|+...|...|.++.+...+.|..-. -.+++.+...++-+.|.
T Consensus 222 ~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 222 NINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred cHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999999986 556555556677889999999999999999987432222222 23456677778889999
Q ss_pred HHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---------------------------CCccc
Q 047305 224 RLFLKMKDS-GCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFV---------------------------PRLGS 275 (767)
Q Consensus 224 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---------------------------~~~~~ 275 (767)
+.++..... +-..+...++.++..+.+...++.+......+...... ++..+
T Consensus 301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence 999888662 22334557788889999999999998888777652111 12222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047305 276 YSCLIDGLFRAKRYDEAYAWYRKMFEEK--IEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGF 353 (767)
Q Consensus 276 ~~~li~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 353 (767)
--+.-++......+....+........ +.-+...|.-+..++...|++.+|+.+|..+......-+...|..+.++|
T Consensus 381 -~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~ 459 (895)
T KOG2076|consen 381 -IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCY 459 (895)
T ss_pred -HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHH
Confidence 122233344444444444455555554 34456678889999999999999999999999875555778999999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------cCCCCCHHHHHHHHHHHHH
Q 047305 354 CDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEK--------AGCFPSVGMFNALIDGLCK 425 (767)
Q Consensus 354 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~ 425 (767)
...|..++|.+.+..++...+ .+..+--.|...+.+.|++++|.+++..+.. .+..|+..........+.+
T Consensus 460 ~~l~e~e~A~e~y~kvl~~~p-~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~ 538 (895)
T KOG2076|consen 460 MELGEYEEAIEFYEKVLILAP-DNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQ 538 (895)
T ss_pred HHHhhHHHHHHHHHHHHhcCC-CchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHH
Confidence 999999999999999998865 5566777888899999999999999999642 2344555555667778888
Q ss_pred cCCHHHHHHHHHHhhcC------CCchhhh-h--hccCCCCcchHHHHHHHHHHHHhcCC-------HHHHHHHHHHHHH
Q 047305 426 AGELEKANLLFYKMEIG------KNPTLFL-R--LSQGGNRVHDKASLQTMVEQYCTAGL-------IHKAYKILMQLAE 489 (767)
Q Consensus 426 ~~~~~~A~~~~~~~~~~------~~~~~~~-~--~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~ 489 (767)
.|+.++-+.+-..+... .-|+.-. + ...................+-.+.++ .... ..+.-...
T Consensus 539 ~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~-~~~~~~e~ 617 (895)
T KOG2076|consen 539 VGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDG-TEFRAVEL 617 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccch-hhhhhhhh
Confidence 99988866655544210 0000000 0 00001111111122222222221111 0011 11111111
Q ss_pred cCCCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCh---hhHHHHHHHHHhcCCHHHHHHHHHHhhhC-C
Q 047305 490 SGNLPDI--ITYNSLINGFCKVGNINGALKLFKELQLKGL--RPDS---VTYGTLINGLQRVDREEDAFRIFGQMPQN-G 561 (767)
Q Consensus 490 ~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~ 561 (767)
.+...+. ..+..++.++++.+++++|..+...+..... .++. ..-...+.+.+..+++..|...++.|+.. +
T Consensus 618 ~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~ 697 (895)
T KOG2076|consen 618 RGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQ 697 (895)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 1111111 1233445556666666666666665554321 1111 01122333445556666666666666542 1
Q ss_pred C--CCC-HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCC-ccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccc
Q 047305 562 C--TPS-PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGR-DDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAP 637 (767)
Q Consensus 562 ~--~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~ 637 (767)
. .|. ...|+.....+.+.++-.-=...+..+....|.+ +......++.....+.+.-|+..+...-. ..|++|..
T Consensus 698 ~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~-~~pd~Pl~ 776 (895)
T KOG2076|consen 698 FYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR-QNPDSPLI 776 (895)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHH-hCCCCcHH
Confidence 1 111 2233323333334443333333333344444544 22233345555556666666665555321 24555554
Q ss_pred hHHHHHHHhhc--C--------CHHHHHHHHHHHHHcCCC-CChHhHHHHHHHHHhcCChhHHHHHHHHHHHCC------
Q 047305 638 YTIWLIGLCQD--G--------QVKEALNIFSVLVECKAI-VTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNG------ 700 (767)
Q Consensus 638 ~~~l~~~~~~~--g--------~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------ 700 (767)
-..+|-++.+. + ..-++..++++..+.... ..-.+++.+|.+|-..|-..-|+.+|+++++..
T Consensus 777 nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~ 856 (895)
T KOG2076|consen 777 NLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTD 856 (895)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCcccccc
Confidence 44444443322 1 123445555555443311 134566667777777777777777777776531
Q ss_pred C---CCC-HHHHHHHHHHHhhcCCccHHHHHHHHHHH
Q 047305 701 F---ILR-PRVCNYLLRSLLFSKDNKKVHAYHLLCRM 733 (767)
Q Consensus 701 ~---~~~-~~~~~~l~~~l~~~~~~~~~~a~~~~~~~ 733 (767)
. .-| .....+.+.-.++..|+ ..-|.+++++-
T Consensus 857 ~~~d~~dLrkeAA~NL~LIY~~SGn-~~lArqil~ky 892 (895)
T KOG2076|consen 857 PKEDNYDLRKEAAYNLHLIYKKSGN-MQLARQILEKY 892 (895)
T ss_pred ccCCcccHHHHHHhhhhhhhccCCc-HHHHHHHHHhh
Confidence 0 111 11233444445546665 77777776653
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-20 Score=204.78 Aligned_cols=432 Identities=12% Similarity=-0.025 Sum_probs=296.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047305 240 AYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLS 319 (767)
Q Consensus 240 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 319 (767)
.+......+.+.|++++|+..|++.++. .|+...|..+..+|.+.|++++|+..+++.++..+. +...|..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 4566777888999999999999998875 466778888999999999999999999999887544 5678888899999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047305 320 EAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQK 399 (767)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 399 (767)
..|++++|+..|......+...+. ....++..+.. ..+........+..+ .+...+..+.. |...........
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~ 278 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPA 278 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchh
Confidence 999999999888776654322122 22222222211 223333333333322 11112222222 222111222221
Q ss_pred HHHHHHHcCCCCCH-HHHHHHHHH---HHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcC
Q 047305 400 LFNKMEKAGCFPSV-GMFNALIDG---LCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAG 475 (767)
Q Consensus 400 ~~~~~~~~~~~~~~-~~~~~l~~~---~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 475 (767)
-+....+. .+.. ..+..+... ....+.+++|...|++... .....+.....+..+...+...|
T Consensus 279 ~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~-----------~~~~~~~~a~a~~~lg~~~~~~g 345 (615)
T TIGR00990 279 GLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALD-----------LGKLGEKEAIALNLRGTFKCLKG 345 (615)
T ss_pred hhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHh-----------cCCCChhhHHHHHHHHHHHHHcC
Confidence 12211111 1111 111111111 1234688899999888741 01123445567788888888899
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 047305 476 LIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFG 555 (767)
Q Consensus 476 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~ 555 (767)
++++|...+++..+..+ .....|..+..++...|++++|+..|+++.+... .+...+..+...+...|++++|+..|+
T Consensus 346 ~~~eA~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~ 423 (615)
T TIGR00990 346 KHLEALADLSKSIELDP-RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQ 423 (615)
T ss_pred CHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999887632 2456778888888899999999999999887642 246678888888899999999999999
Q ss_pred HhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHH-hhhcCCCCC
Q 047305 556 QMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLE-MDFKLNDFQ 634 (767)
Q Consensus 556 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~p~~ 634 (767)
+.++.. +.+...+..++.++.+.|++++|+..|+++++..|.++.++..++.++...|++++|+..+.+ +.. .|..
T Consensus 424 kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~ 500 (615)
T TIGR00990 424 KSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKET 500 (615)
T ss_pred HHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCcc
Confidence 988753 345667777888888999999999999999999999999999999999999999999888888 332 2432
Q ss_pred ccchH------HHHH-HHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047305 635 LAPYT------IWLI-GLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 635 ~~~~~------~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 700 (767)
...+. ..+. .+...|++++|+.+++++++.+ |.+..++..+++++...|++++|+..|+++++..
T Consensus 501 ~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 501 KPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred ccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 22111 1122 2334689999999999998876 6677788889999999999999999999987643
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-20 Score=203.97 Aligned_cols=433 Identities=13% Similarity=-0.044 Sum_probs=277.8
Q ss_pred hhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 047305 204 FTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGL 283 (767)
Q Consensus 204 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 283 (767)
..+......+.+.|++++|+..|++.... .|+...|..+..+|.+.|++++|+..+++.++... .+...+..+..+|
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~ 204 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 34556677788888888888888887764 56777788888888888888888888888877542 2456777788888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047305 284 FRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQAR 363 (767)
Q Consensus 284 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 363 (767)
...|++++|..-|..+...+...+ .....++..+.. ..+........+.... +...+..+.. +......+...
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~-~~~~~~~~~~l~----~~a~~~~~~~l~~~~~-~~~~~~~~~~-~~~~~~~~~~~ 277 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRN-EQSAQAVERLLK----KFAESKAKEILETKPE-NLPSVTFVGN-YLQSFRPKPRP 277 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcc-HHHHHHHHHHHH----HHHHHHHHHHHhcCCC-CCCCHHHHHH-HHHHccCCcch
Confidence 888888888887776655432212 222222221111 1222223333222111 1111111111 21111111111
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047305 364 SLQVEIWKRDSLPNTHTFTILICG---MCRNGMVDDAQKLFNKMEKAG-CFP-SVGMFNALIDGLCKAGELEKANLLFYK 438 (767)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 438 (767)
.-+....+..... ...+..+... ....+.+++|...|+...+.+ ..| ....+..+...+...|++++|+..|++
T Consensus 278 ~~~~~~~~~~~~~-~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k 356 (615)
T TIGR00990 278 AGLEDSNELDEET-GNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356 (615)
T ss_pred hhhhccccccccc-ccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1111111111100 0111111111 123467888888888887764 123 345677777788888888888888888
Q ss_pred hhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 047305 439 MEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKL 518 (767)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 518 (767)
.. ...+.....+..++..+...|++++|...|+++.+.. +.+...|..+...+...|++++|+..
T Consensus 357 al--------------~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 421 (615)
T TIGR00990 357 SI--------------ELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKD 421 (615)
T ss_pred HH--------------HcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 75 2344556677788888888888888888888887764 23567777788888888888888888
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCC
Q 047305 519 FKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISG 598 (767)
Q Consensus 519 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 598 (767)
|++....... +...+..+..++.+.|++++|+..++++++. .+.+..++..++.++...|++++|+..|+++++..|.
T Consensus 422 ~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~ 499 (615)
T TIGR00990 422 YQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE 499 (615)
T ss_pred HHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Confidence 8888876322 4456677777888888888888888888764 2445677778888888888888888888888888776
Q ss_pred CccchHH------HHHHHHh-cCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 047305 599 RDDESMK------SIEEFLQ-KGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECK 665 (767)
Q Consensus 599 ~~~~~~~------l~~~~~~-~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 665 (767)
....+.. .+..+.. .|++++|+..+.+.. ..+|++..++..++.++...|++++|+.+|+++.+..
T Consensus 500 ~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl-~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 500 TKPMYMNVLPLINKALALFQWKQDFIEAENLCEKAL-IIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred cccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 5544332 2333333 588888887777732 1357777778888888888888888888888887764
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-20 Score=203.03 Aligned_cols=328 Identities=14% Similarity=-0.010 Sum_probs=146.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 047305 350 IKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGEL 429 (767)
Q Consensus 350 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 429 (767)
+..+.+.|++++|..++..++...+. +...+..++.+....|+++.|+..++++....+. +...+..+...+...|++
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQY 126 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCH
Confidence 33344444444444444444444332 1222223333333444444444444444443221 233444444444444444
Q ss_pred HHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 047305 430 EKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKV 509 (767)
Q Consensus 430 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 509 (767)
++|...++++. ...+.+...+..++..+...|++++|...++.+....+. +...+..+ ..+...
T Consensus 127 ~~Ai~~l~~Al--------------~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~ 190 (656)
T PRK15174 127 ATVADLAEQAW--------------LAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNK 190 (656)
T ss_pred HHHHHHHHHHH--------------HhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHc
Confidence 44444444443 112223334444444444445555554444444333211 11122111 224445
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhH----H
Q 047305 510 GNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSL----A 585 (767)
Q Consensus 510 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A 585 (767)
|++++|...++.+......++......+..++...|++++|+..++++.+.. +.+...+..+..++...|++++ |
T Consensus 191 g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A 269 (656)
T PRK15174 191 SRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQA 269 (656)
T ss_pred CCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHH
Confidence 5555555555554443222222223333444445555555555555554432 2234444445555555555543 4
Q ss_pred HHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 047305 586 FSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECK 665 (767)
Q Consensus 586 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 665 (767)
...|+++++..|+++.++..++..+...|++++|+..+.+.. ...|+++.++..++.+|...|++++|+..++++.+.+
T Consensus 270 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al-~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 270 AEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSL-ATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 555555555555555555555555555555555555544421 1235555455555555555555555555555555443
Q ss_pred CCCChHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 666 AIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 666 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
|.++..+..++.++...|+.++|+..|+++++
T Consensus 349 -P~~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 349 -GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred -ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33333333344455555555555555555544
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-20 Score=203.88 Aligned_cols=333 Identities=10% Similarity=-0.009 Sum_probs=275.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcch
Q 047305 381 FTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHD 460 (767)
Q Consensus 381 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (767)
...++..+.+.|++++|..+++........ +...+..++.+....|++++|...++++. ...+.+
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l--------------~~~P~~ 109 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLL--------------AVNVCQ 109 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHH--------------HhCCCC
Confidence 344567778899999999999999887544 45566667778888999999999999986 344566
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 047305 461 KASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLING 540 (767)
Q Consensus 461 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 540 (767)
...+..+...+...|++++|...++++.+.. +.+...+..++.++...|++++|...++.+...... +...+..+ ..
T Consensus 110 ~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~ 186 (656)
T PRK15174 110 PEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LS 186 (656)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HH
Confidence 7788999999999999999999999998863 336678888999999999999999999988776332 22233333 34
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHH--
Q 047305 541 LQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVEN-- 618 (767)
Q Consensus 541 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~-- 618 (767)
+...|++++|...++.+++....++...+..++.++.+.|++++|+..|+++++..|.++.++..++..+...|++++
T Consensus 187 l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~ 266 (656)
T PRK15174 187 FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAK 266 (656)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhH
Confidence 788999999999999988754334444555566778899999999999999999999999999999999999999986
Q ss_pred --HHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047305 619 --AIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYT 696 (767)
Q Consensus 619 --A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 696 (767)
|+..+.+.. ...|+++.++..++.++...|++++|+..++++++.. |.++.++..++.+|...|++++|+..|+++
T Consensus 267 ~~A~~~~~~Al-~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~a 344 (656)
T PRK15174 267 LQAAEHWRHAL-QFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQL 344 (656)
T ss_pred HHHHHHHHHHH-hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 777777743 2469999999999999999999999999999999987 788889999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHc
Q 047305 697 LKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCRMKSV 736 (767)
Q Consensus 697 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~~ 736 (767)
++.+ |+...+.......+...|+ +++|...+++....
T Consensus 345 l~~~--P~~~~~~~~~a~al~~~G~-~deA~~~l~~al~~ 381 (656)
T PRK15174 345 AREK--GVTSKWNRYAAAALLQAGK-TSEAESVFEHYIQA 381 (656)
T ss_pred HHhC--ccchHHHHHHHHHHHHCCC-HHHHHHHHHHHHHh
Confidence 8754 7765544443333447888 99999999998754
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-19 Score=200.65 Aligned_cols=416 Identities=10% Similarity=0.002 Sum_probs=250.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 047305 242 NALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEA 321 (767)
Q Consensus 242 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 321 (767)
.-.+......|+.++|++++.+..... +.+...+..+...+...|++++|..++++.+...+. +...+..++..+...
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~l~~~ 96 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHC
Confidence 333444444555555555555544311 122223445555555555555555555555444222 233344444445555
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047305 322 GKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLF 401 (767)
Q Consensus 322 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 401 (767)
|++++|+..++++.+.... +.. +..+..++...|+.++|...++++.+..+ .+...+..+...+...|..+.|+..+
T Consensus 97 g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~Al~~l 173 (765)
T PRK10049 97 GQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPALGAI 173 (765)
T ss_pred CCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 5555555555555443211 223 44444444455555555555555544433 22333333444444444444444444
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHH-----HhcCC
Q 047305 402 NKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQY-----CTAGL 476 (767)
Q Consensus 402 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~ 476 (767)
+.+.. .|+.. .-+ ........+... ...++
T Consensus 174 ~~~~~---~p~~~---~~l---------------------------------------~~~~~~~~~r~~~~~~~~~~~r 208 (765)
T PRK10049 174 DDANL---TPAEK---RDL---------------------------------------EADAAAELVRLSFMPTRSEKER 208 (765)
T ss_pred HhCCC---CHHHH---HHH---------------------------------------HHHHHHHHHHhhcccccChhHH
Confidence 43332 12100 000 000011111111 12223
Q ss_pred H---HHHHHHHHHHHHc-CCCCCHh-hH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHhcCC
Q 047305 477 I---HKAYKILMQLAES-GNLPDII-TY----NSLINGFCKVGNINGALKLFKELQLKGLR-PDSVTYGTLINGLQRVDR 546 (767)
Q Consensus 477 ~---~~A~~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~ 546 (767)
+ ++|+..++.+.+. ...|+.. .+ ...+.++...|++++|+..|+.+.+.+.. |+. ....+..+|...|+
T Consensus 209 ~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~ 287 (765)
T PRK10049 209 YAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQ 287 (765)
T ss_pred HHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCC
Confidence 3 6788888888754 1122221 11 11133456779999999999999887532 332 22335778999999
Q ss_pred HHHHHHHHHHhhhCCCCC---CHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCc---------------cchHHHHH
Q 047305 547 EEDAFRIFGQMPQNGCTP---SPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRD---------------DESMKSIE 608 (767)
Q Consensus 547 ~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---------------~~~~~l~~ 608 (767)
+++|+..|+++.+..... .......+..++.+.|++++|.+.++++.+..|... .+...++.
T Consensus 288 ~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~ 367 (765)
T PRK10049 288 PEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQ 367 (765)
T ss_pred cHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHH
Confidence 999999999987643111 134455666678899999999999999998877432 23456788
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhH
Q 047305 609 EFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDL 688 (767)
Q Consensus 609 ~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 688 (767)
.+...|+.++|++.+.++.. ..|.++.++..++.++...|++++|++.++++++.. |.++..+..++..+...|++++
T Consensus 368 ~l~~~g~~~eA~~~l~~al~-~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~ 445 (765)
T PRK10049 368 VAKYSNDLPQAEMRARELAY-NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQ 445 (765)
T ss_pred HHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHH
Confidence 89999999999999988543 369999999999999999999999999999999987 7888899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHH
Q 047305 689 AMDVFLYTLKNGFILRPRVCNYLL 712 (767)
Q Consensus 689 A~~~~~~~~~~~~~~~~~~~~~l~ 712 (767)
|...++++++.. |+......+-
T Consensus 446 A~~~~~~ll~~~--Pd~~~~~~~~ 467 (765)
T PRK10049 446 MDVLTDDVVARE--PQDPGVQRLA 467 (765)
T ss_pred HHHHHHHHHHhC--CCCHHHHHHH
Confidence 999999998754 7776544433
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-21 Score=199.27 Aligned_cols=320 Identities=15% Similarity=0.069 Sum_probs=262.2
Q ss_pred HHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---H
Q 047305 420 IDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPD---I 496 (767)
Q Consensus 420 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~ 496 (767)
...+...|++++|...|.++. ...+.+..++..++..+...|++++|..+++.+......++ .
T Consensus 42 g~~~~~~~~~~~A~~~~~~al--------------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 107 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEML--------------KVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRL 107 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHH--------------hcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHH
Confidence 445677899999999999996 22345667888999999999999999999999987532222 2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC----HhhHHHH
Q 047305 497 ITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPS----PAVYKSL 572 (767)
Q Consensus 497 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l 572 (767)
..+..++..|...|++++|..+|+++.+.. .++..++..++..+...|++++|.+.++.+.+.+..+. ...+..+
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l 186 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCEL 186 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 467888999999999999999999998763 34567899999999999999999999999987643332 2244567
Q ss_pred HHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-ccchHHHHHHHhhcCCH
Q 047305 573 MTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQ-LAPYTIWLIGLCQDGQV 651 (767)
Q Consensus 573 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~ 651 (767)
+..+.+.|++++|...|+++++..|....++..++..+.+.|++++|++.+.++... .|.+ ...+..++.+|...|++
T Consensus 187 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~ 265 (389)
T PRK11788 187 AQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDE 265 (389)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCH
Confidence 777889999999999999999999999989999999999999999999999995432 3443 34578999999999999
Q ss_pred HHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhc--CCccHHHHHHH
Q 047305 652 KEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFS--KDNKKVHAYHL 729 (767)
Q Consensus 652 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~~a~~~ 729 (767)
++|...++++.+.. |+...+..++.++.+.|++++|..+++++++. .|+...+..++...... .|+ .+++..+
T Consensus 266 ~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~-~~~a~~~ 340 (389)
T PRK11788 266 AEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGR-AKESLLL 340 (389)
T ss_pred HHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCcc-chhHHHH
Confidence 99999999998875 45556689999999999999999999999875 48988888777776522 446 8899999
Q ss_pred HHHHHHcCCCCCCcchhhhhhhcCCCCcccc
Q 047305 730 LCRMKSVGYDLDACLYPKTKSLLPGPWNTRE 760 (767)
Q Consensus 730 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 760 (767)
+++|...++.|++...-.-+......|...|
T Consensus 341 ~~~~~~~~~~~~p~~~c~~cg~~~~~~~~~c 371 (389)
T PRK11788 341 LRDLVGEQLKRKPRYRCRNCGFTARTLYWHC 371 (389)
T ss_pred HHHHHHHHHhCCCCEECCCCCCCCccceeEC
Confidence 9999999999988755444666667776554
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-16 Score=153.61 Aligned_cols=605 Identities=11% Similarity=0.046 Sum_probs=434.5
Q ss_pred CchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047305 78 GFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYY 157 (767)
Q Consensus 78 ~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 157 (767)
+...|..+|....+.+ |-++..|..-.+.--..|++..|..+..+-.+ .++.+...|---+ +....+.|..+..
T Consensus 266 DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe-~cprSeDvWLeai----RLhp~d~aK~vvA 339 (913)
T KOG0495|consen 266 DIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCE-ECPRSEDVWLEAI----RLHPPDVAKTVVA 339 (913)
T ss_pred HHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHh-hCCchHHHHHHHH----hcCChHHHHHHHH
Confidence 4567888888888777 45555565555555556777777666554333 2344444543332 3455666777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCC
Q 047305 158 EMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILP-NKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSP 236 (767)
Q Consensus 158 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 236 (767)
..++.. +.++..|-..... ..+...=.+++...++. .| ++..|-. .......+.|.-++.+..+. ++.
T Consensus 340 ~Avr~~-P~Sv~lW~kA~dL---E~~~~~K~RVlRKALe~--iP~sv~LWKa----AVelE~~~darilL~rAvec-cp~ 408 (913)
T KOG0495|consen 340 NAVRFL-PTSVRLWLKAADL---ESDTKNKKRVLRKALEH--IPRSVRLWKA----AVELEEPEDARILLERAVEC-CPQ 408 (913)
T ss_pred HHHHhC-CCChhhhhhHHhh---hhHHHHHHHHHHHHHHh--CCchHHHHHH----HHhccChHHHHHHHHHHHHh-ccc
Confidence 766643 3344444322221 12233334566666654 23 3333433 33455666688888888775 222
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCCHHHHH
Q 047305 237 DFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMF----EEKIEPDVVLYG 312 (767)
Q Consensus 237 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~ 312 (767)
+.. |.-++.+..-++.|.+++.+..+. ++.+...|.+-...--..|+.+....++.+-+ ..|+..+...|-
T Consensus 409 s~d----LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl 483 (913)
T KOG0495|consen 409 SMD----LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWL 483 (913)
T ss_pred hHH----HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHH
Confidence 333 445566777888888898888775 45577788877777778888888888876543 457777888888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047305 313 VMIRGLSEAGKVKDAMKLLSDMRERGIVPD--TYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCR 390 (767)
Q Consensus 313 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 390 (767)
.-...|-..|..--+..+....+..|+.-. ..||..-...|.+.+.++-++.+|...++..+ .+...|...+..--.
T Consensus 484 ~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp-~k~slWlra~~~ek~ 562 (913)
T KOG0495|consen 484 KEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP-CKKSLWLRAAMFEKS 562 (913)
T ss_pred HHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHh
Confidence 888888888888888888888887776532 47788888888888999999999888887654 456777777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHH
Q 047305 391 NGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQ 470 (767)
Q Consensus 391 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 470 (767)
.|..+....+|++....-. -....|......+...|+...|..++..+. ...+.+...+...+..
T Consensus 563 hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af--------------~~~pnseeiwlaavKl 627 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAF--------------EANPNSEEIWLAAVKL 627 (913)
T ss_pred cCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHH--------------HhCCCcHHHHHHHHHH
Confidence 8888888889988887632 255667777777888899999998888774 2334567788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCCHHH
Q 047305 471 YCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDS-VTYGTLINGLQRVDREED 549 (767)
Q Consensus 471 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~ 549 (767)
......++.|..+|.+.... .|+...|..-+..-.-.++.++|++++++.++. .|+. ..|..+...+-..++.+.
T Consensus 628 e~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~ 703 (913)
T KOG0495|consen 628 EFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEM 703 (913)
T ss_pred hhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHH
Confidence 88889999999999988765 456666766666666778899999999888876 4554 467788888888889999
Q ss_pred HHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 047305 550 AFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFK 629 (767)
Q Consensus 550 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (767)
|...|..-.+. ++.....|..+.+.=.+.|++-.|..++++..-.+|.+...|...+..-.+.|+.+.|...+.+. .+
T Consensus 704 aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakA-LQ 781 (913)
T KOG0495|consen 704 AREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKA-LQ 781 (913)
T ss_pred HHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHH-HH
Confidence 98888776653 45567788888888888889999999999999999999999999999999999999996555553 23
Q ss_pred CCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHH
Q 047305 630 LNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRP-RVC 708 (767)
Q Consensus 630 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~ 708 (767)
..|.+...|..-++...+.++-.+++..+++. ..|+.++..++..+....++++|++-|+++++.+ ||. ++|
T Consensus 782 ecp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d--~d~GD~w 854 (913)
T KOG0495|consen 782 ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD--PDNGDAW 854 (913)
T ss_pred hCCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC--CccchHH
Confidence 46888887888887777777766655555443 6788899999999999999999999999998865 664 456
Q ss_pred HHHHHHHhhcCCccHHHHHHHHHHHHH
Q 047305 709 NYLLRSLLFSKDNKKVHAYHLLCRMKS 735 (767)
Q Consensus 709 ~~l~~~l~~~~~~~~~~a~~~~~~~~~ 735 (767)
.+++.+.+ ..|. -++-.+++.+...
T Consensus 855 a~fykfel-~hG~-eed~kev~~~c~~ 879 (913)
T KOG0495|consen 855 AWFYKFEL-RHGT-EEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHHH-HhCC-HHHHHHHHHHHhc
Confidence 67777766 7775 4555667666553
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.5e-19 Score=194.41 Aligned_cols=416 Identities=11% Similarity=-0.012 Sum_probs=281.4
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047305 272 RLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIK 351 (767)
Q Consensus 272 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 351 (767)
+.....-.+......|+.++|+.++.+..... ..+...+..+...+...|++++|..++++..+..+. +...+..+..
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQ-NDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 44445555666667777777777777776532 224445677777777777777777777777665322 4555666667
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 047305 352 GFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEK 431 (767)
Q Consensus 352 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 431 (767)
.+...|++++|...++.+++..+ .+.. +..+...+...|++++|+..++++.+..+. +...+..+..++...+..++
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHH
Confidence 77777777777777777776643 3344 666677777777777777777777765432 44455556666666777777
Q ss_pred HHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH-----
Q 047305 432 ANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGF----- 506 (767)
Q Consensus 432 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----- 506 (767)
|+..++.... .|+ . ....+. .....++...
T Consensus 169 Al~~l~~~~~----------------~p~---~-------------~~~l~~-------------~~~~~~~r~~~~~~~ 203 (765)
T PRK10049 169 ALGAIDDANL----------------TPA---E-------------KRDLEA-------------DAAAELVRLSFMPTR 203 (765)
T ss_pred HHHHHHhCCC----------------CHH---H-------------HHHHHH-------------HHHHHHHHhhccccc
Confidence 7776665530 011 0 000000 0011111111
Q ss_pred HhcCCH---HHHHHHHHHHHHC-CCCCChh-hHH----HHHHHHHhcCCHHHHHHHHHHhhhCCCC-CCHhhHHHHHHHH
Q 047305 507 CKVGNI---NGALKLFKELQLK-GLRPDSV-TYG----TLINGLQRVDREEDAFRIFGQMPQNGCT-PSPAVYKSLMTWS 576 (767)
Q Consensus 507 ~~~g~~---~~A~~~~~~~~~~-~~~p~~~-~~~----~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~ 576 (767)
...+++ ++|++.++.+... ...|+.. .+. ..+.++...|++++|+..|+.+.+.+.+ |+. ....+..+|
T Consensus 204 ~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~y 282 (765)
T PRK10049 204 SEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAY 282 (765)
T ss_pred ChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHH
Confidence 122233 7788888888864 2233321 111 1133456779999999999999886522 222 223357789
Q ss_pred HhcCChhHHHHHHHHHHhccCCCc----cchHHHHHHHHhcCCHHHHHHHHHHhhhcCCC-------------CC--ccc
Q 047305 577 CRRRKFSLAFSLWLQYLRDISGRD----DESMKSIEEFLQKGEVENAIQGLLEMDFKLND-------------FQ--LAP 637 (767)
Q Consensus 577 ~~~g~~~~A~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p-------------~~--~~~ 637 (767)
...|++++|+..|+++++..|.++ .....++.++.+.|++++|+..+.++... .| ++ ..+
T Consensus 283 l~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~-~P~~~~~~~~~~~~p~~~~~~a 361 (765)
T PRK10049 283 LKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINN-SPPFLRLYGSPTSIPNDDWLQG 361 (765)
T ss_pred HhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhc-CCceEeecCCCCCCCCchHHHH
Confidence 999999999999999998877663 34456777889999999999998885432 23 22 234
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLF 717 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 717 (767)
+..++.++...|++++|++.+++++... |.++..+..++.++...|++++|++.++++++. .|+.............
T Consensus 362 ~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al 438 (765)
T PRK10049 362 QSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTAL 438 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHH
Confidence 5678889999999999999999999887 888999999999999999999999999999874 4886655554444443
Q ss_pred cCCccHHHHHHHHHHHHHcCCCCCCcch
Q 047305 718 SKDNKKVHAYHLLCRMKSVGYDLDACLY 745 (767)
Q Consensus 718 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 745 (767)
..|+ +++|..+++++... .|+....
T Consensus 439 ~~~~-~~~A~~~~~~ll~~--~Pd~~~~ 463 (765)
T PRK10049 439 DLQE-WRQMDVLTDDVVAR--EPQDPGV 463 (765)
T ss_pred HhCC-HHHHHHHHHHHHHh--CCCCHHH
Confidence 7787 99999999999874 6666533
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8e-16 Score=151.35 Aligned_cols=611 Identities=10% Similarity=-0.017 Sum_probs=476.2
Q ss_pred ChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHH
Q 047305 43 NPQVGFRFFIWAAKRKRLRSFASNSAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESFG 122 (767)
Q Consensus 43 ~~~~a~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 122 (767)
+...|.-++.-+...+| .+...|-+-.+.=-..|.++.|..++.+--+. ++-+.++|..-++ ....+.|..+.-
T Consensus 266 DikKaR~llKSvretnP-~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLeaiR----Lhp~d~aK~vvA 339 (913)
T KOG0495|consen 266 DIKKARLLLKSVRETNP-KHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEAIR----LHPPDVAKTVVA 339 (913)
T ss_pred HHHHHHHHHHHHHhcCC-CCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHHHh----cCChHHHHHHHH
Confidence 46678888888877765 45556666666666788888888877665443 3567777766554 355667777777
Q ss_pred HhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 047305 123 KMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPN 202 (767)
Q Consensus 123 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 202 (767)
...+.- +.++..|--... -..+...=.+++.+.++. ++.++..|...+ ...+.+.|+.++.+..+. ++.+
T Consensus 340 ~Avr~~-P~Sv~lW~kA~d---LE~~~~~K~RVlRKALe~-iP~sv~LWKaAV----elE~~~darilL~rAvec-cp~s 409 (913)
T KOG0495|consen 340 NAVRFL-PTSVRLWLKAAD---LESDTKNKKRVLRKALEH-IPRSVRLWKAAV----ELEEPEDARILLERAVEC-CPQS 409 (913)
T ss_pred HHHHhC-CCChhhhhhHHh---hhhHHHHHHHHHHHHHHh-CCchHHHHHHHH----hccChHHHHHHHHHHHHh-ccch
Confidence 666532 444444433332 233444455677777765 355566665444 446677799999998885 2223
Q ss_pred hhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----HhCCCCCCcccHHH
Q 047305 203 KFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSF----EKDGFVPRLGSYSC 278 (767)
Q Consensus 203 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~ 278 (767)
.. |.-++.+...++.|..+++...+. ++-+..+|.+-...=-..|+.+...+++++- ...|+..+...|..
T Consensus 410 ~d----LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~ 484 (913)
T KOG0495|consen 410 MD----LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLK 484 (913)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHH
Confidence 33 344566777889999999999886 6668888888777777899999999888765 45688888888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 047305 279 LIDGLFRAKRYDEAYAWYRKMFEEKIEP--DVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDL 356 (767)
Q Consensus 279 li~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 356 (767)
=...|-..|..--+..+....+.-|+.- -..||+.-...|.+.+.++-|..+|....+-- +-+...|......--..
T Consensus 485 eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~h 563 (913)
T KOG0495|consen 485 EAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSH 563 (913)
T ss_pred HHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhc
Confidence 8889999999999999999988877653 23588999999999999999999999988863 33667777777777778
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047305 357 GLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLF 436 (767)
Q Consensus 357 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 436 (767)
|..+.-..+++.++..-+ -....|.....-+-..|+...|..++..+.+.... +...|..-+.....+.+++.|..+|
T Consensus 564 gt~Esl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~ll 641 (913)
T KOG0495|consen 564 GTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLL 641 (913)
T ss_pred CcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHH
Confidence 999999999999988754 34566777777888899999999999999887644 6778999999999999999999999
Q ss_pred HHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHHhcCCHHHH
Q 047305 437 YKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDI-ITYNSLINGFCKVGNINGA 515 (767)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A 515 (767)
.+.. ...++..+|..-+...-..+..++|.+++++.++. -|+. ..|..+...+-+.++.+.|
T Consensus 642 akar---------------~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~a 704 (913)
T KOG0495|consen 642 AKAR---------------SISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMA 704 (913)
T ss_pred HHHh---------------ccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHH
Confidence 9884 34566778888888888889999999999999887 4443 5677888889999999999
Q ss_pred HHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 047305 516 LKLFKELQLKGLRPD-SVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLR 594 (767)
Q Consensus 516 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 594 (767)
.+.|..-.+. -|+ ...|..+...--+.|..-.|+.++++..-.+ +.+...|...+.+-.+.|+.++|..+..++++
T Consensus 705 R~aY~~G~k~--cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 705 REAYLQGTKK--CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred HHHHHhcccc--CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999887665 444 4467777777778889999999999998664 56788999999998999999999999999999
Q ss_pred ccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHH
Q 047305 595 DISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCV 674 (767)
Q Consensus 595 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 674 (767)
..|.+...|..-+....+.++-.+++..+.+- ..++.++..++..+....++++|.+.|.++++.+ +..-.+|.
T Consensus 782 ecp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa 855 (913)
T KOG0495|consen 782 ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWA 855 (913)
T ss_pred hCCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHH
Confidence 99999999988888877777766655554443 3456668899999999999999999999999998 77788898
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 047305 675 KLIHGLCKRGYLDLAMDVFLYTLKNGFILRP 705 (767)
Q Consensus 675 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 705 (767)
.+...+...|.-++-.+++.+.... +|..
T Consensus 856 ~fykfel~hG~eed~kev~~~c~~~--EP~h 884 (913)
T KOG0495|consen 856 WFYKFELRHGTEEDQKEVLKKCETA--EPTH 884 (913)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhcc--CCCC
Confidence 8999999999999999999988653 3643
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.8e-16 Score=160.01 Aligned_cols=617 Identities=15% Similarity=0.057 Sum_probs=419.8
Q ss_pred HHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 047305 107 GYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEV 186 (767)
Q Consensus 107 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 186 (767)
.....|++++|.+++.++++.. +.+...|.+|...|-..|+.+.+...+-.+.... +.|...|..+.....+.|.++.
T Consensus 148 ~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHH
Confidence 3444599999999999999865 7788899999999999999999999887776655 5677889999999999999999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCCHHHHHHHHH
Q 047305 187 AIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYN----ALLNGFCKLRRVDEALALLR 262 (767)
Q Consensus 187 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~ 262 (767)
|.-+|.+..+... ++....---+..|-+.|+...|.+-|.++.....+.|..-+. .+++.+...++.+.|.+.++
T Consensus 226 A~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 226 ARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999743 355555566788999999999999999998874332333233 34555667777799999998
Q ss_pred HHHhCC-CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------------------------CCCHHHHHHH
Q 047305 263 SFEKDG-FVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKI---------------------------EPDVVLYGVM 314 (767)
Q Consensus 263 ~~~~~~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~---------------------------~~~~~~~~~l 314 (767)
.....+ -..+...++.++..+.+...++.|......+..... .++.... -+
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl 383 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RL 383 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hH
Confidence 887632 233556788999999999999999998888776211 1222221 12
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 047305 315 IRGLSEAGKVKDAMKLLSDMRERG--IVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNG 392 (767)
Q Consensus 315 ~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 392 (767)
+-++......+....+........ +.-+...|.-+..++...|++.+|..++..+.......+..+|-.+..+|...|
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 222333334444444444455554 333467889999999999999999999999998877677889999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHH
Q 047305 393 MVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYC 472 (767)
Q Consensus 393 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 472 (767)
.++.|...|+......+. +...-..|...+.+.|+.++|.+.+..+. +|+.- ........+...........+.
T Consensus 464 e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~---~~D~~--~~e~~a~~~e~ri~~~r~d~l~ 537 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQII---NPDGR--NAEACAWEPERRILAHRCDILF 537 (895)
T ss_pred hHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhccc---CCCcc--chhhccccHHHHHHHHHHHHHH
Confidence 999999999999886432 45566778888999999999999999875 12110 1122334455555666777788
Q ss_pred hcCCHHHHHHHHHHHHHcCC-----CC-----------------CHhhHHHHHHHHHhcCCHHHHHHHH------HHHHH
Q 047305 473 TAGLIHKAYKILMQLAESGN-----LP-----------------DIITYNSLINGFCKVGNINGALKLF------KELQL 524 (767)
Q Consensus 473 ~~g~~~~A~~~~~~~~~~~~-----~~-----------------~~~~~~~l~~~~~~~g~~~~A~~~~------~~~~~ 524 (767)
..|+.++=+.....|..... -| .......++.+-.+.++.....+-. .....
T Consensus 538 ~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~ 617 (895)
T KOG2076|consen 538 QVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVEL 617 (895)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhh
Confidence 88887765555544443211 01 1111122233333333322211111 11111
Q ss_pred CCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCCHh----hHHHHHHHHHhcCChhHHHHHHHHHHhc--
Q 047305 525 KGLRPDS--VTYGTLINGLQRVDREEDAFRIFGQMPQNG-CTPSPA----VYKSLMTWSCRRRKFSLAFSLWLQYLRD-- 595 (767)
Q Consensus 525 ~~~~p~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 595 (767)
.|+.-+. ..+..++.++.+.+++++|..+...+.... +..+.. .-...+.+....+++..|.+.++.++..
T Consensus 618 ~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~ 697 (895)
T KOG2076|consen 618 RGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQ 697 (895)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 2222222 245667788899999999999999988742 122222 2234455667899999999999999977
Q ss_pred ---cCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-ccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChH
Q 047305 596 ---ISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQ-LAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPP 671 (767)
Q Consensus 596 ---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 671 (767)
.|.....++.......+.|+-.--...+..+..+ .|++ +.....-|..+...+.+.-|+..|-++...+ |.+|-
T Consensus 698 ~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~-~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~-pd~Pl 775 (895)
T KOG2076|consen 698 FYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVK-NKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQN-PDSPL 775 (895)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CccCCcceeeeechhHhhccchHHHHHHHHHHHHhC-CCCcH
Confidence 5555555554444455556544444444443332 3444 5555566777788899999999999998886 67677
Q ss_pred hHHHHHHHHH--h--------cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHc
Q 047305 672 SCVKLIHGLC--K--------RGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCRMKSV 736 (767)
Q Consensus 672 ~~~~l~~~~~--~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~~ 736 (767)
+-..+|-++. . .-..-.+..++++-.+.-..-+.....|.++..+...|- ..-|...+++..+.
T Consensus 776 ~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl-~~LA~~YYekvL~~ 849 (895)
T KOG2076|consen 776 INLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGL-VHLAVSYYEKVLEV 849 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHccc-HHHHHHHHHHHhCC
Confidence 7666666554 1 122456777777665432222455566655554447887 88899999887754
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-17 Score=179.47 Aligned_cols=448 Identities=12% Similarity=0.032 Sum_probs=246.4
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 047305 178 LSKSGKTEVAIKMLDEMTQRGILPNK-FTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDE 256 (767)
Q Consensus 178 ~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 256 (767)
..+.|+++.|+..|++..+.. |+. .....++..+...|+.++|+..+++.... ..........+...+...|++++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAG--PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhC--ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHH
Confidence 345555556665555555542 221 11114555555555555555555555421 01112222222344555555555
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047305 257 ALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRE 336 (767)
Q Consensus 257 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 336 (767)
|+++++++.+.... +...+..++..+...++.++|+..++++... .|+...+..++..+...++..+|+..++++.+
T Consensus 121 Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 121 ALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 55555555554322 2344444555555555555555555555544 23333333332223233444345555555555
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 047305 337 RGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMF 416 (767)
Q Consensus 337 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 416 (767)
..+. +...+..+..++.+.|-...|.++..+-... .+......| ..+.|.+..+- +..++.
T Consensus 198 ~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~---f~~~~~~~l--------~~~~~a~~vr~----a~~~~~--- 258 (822)
T PRK14574 198 LAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNL---VSAEHYRQL--------ERDAAAEQVRM----AVLPTR--- 258 (822)
T ss_pred hCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccc---cCHHHHHHH--------HHHHHHHHHhh----cccccc---
Confidence 4322 3444455555555555555555443321100 000111000 00111111110 100100
Q ss_pred HHHHHHHHHcCCH---HHHHHHHHHhhcCCCchhhhhhccCCCCcch----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047305 417 NALIDGLCKAGEL---EKANLLFYKMEIGKNPTLFLRLSQGGNRVHD----KASLQTMVEQYCTAGLIHKAYKILMQLAE 489 (767)
Q Consensus 417 ~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 489 (767)
....++ +.|+.-++.+.... ...++. .......+-++...|++.++++.++.+..
T Consensus 259 -------~~~~r~~~~d~ala~~~~l~~~~-----------~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~ 320 (822)
T PRK14574 259 -------SETERFDIADKALADYQNLLTRW-----------GKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA 320 (822)
T ss_pred -------cchhhHHHHHHHHHHHHHHHhhc-----------cCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Confidence 011122 23333333332100 011111 22334566777888999999999999987
Q ss_pred cCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC--
Q 047305 490 SGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGL-----RPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGC-- 562 (767)
Q Consensus 490 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-- 562 (767)
.+.+....+-..+.++|...+++++|..+++++..... .++......|..++...+++++|..+++++.+...
T Consensus 321 ~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~ 400 (822)
T PRK14574 321 EGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQ 400 (822)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcE
Confidence 76543344667788999999999999999999876431 11222346788899999999999999999986311
Q ss_pred ---------CC--C-HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 047305 563 ---------TP--S-PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKL 630 (767)
Q Consensus 563 ---------~~--~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (767)
.| + ...+..++..+...|++.+|++.+++++...|.|+.....++.++...|.+.+|.+.++.. ...
T Consensus 401 ~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a-~~l 479 (822)
T PRK14574 401 VGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAV-ESL 479 (822)
T ss_pred EeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-hhh
Confidence 11 1 1233344555777888888888888888888888888888888888888888887777443 234
Q ss_pred CCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCh
Q 047305 631 NDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTP 670 (767)
Q Consensus 631 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 670 (767)
.|++..+....+.++...|++++|..+.+++.+.. |.++
T Consensus 480 ~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~-Pe~~ 518 (822)
T PRK14574 480 APRSLILERAQAETAMALQEWHQMELLTDDVISRS-PEDI 518 (822)
T ss_pred CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC-CCch
Confidence 67777777888888888888888888888887775 5554
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.9e-19 Score=183.65 Aligned_cols=301 Identities=16% Similarity=0.091 Sum_probs=186.2
Q ss_pred HHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCC
Q 047305 107 GYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPN---IVTFSLLINGLSKSGK 183 (767)
Q Consensus 107 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~ 183 (767)
.+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+.+.+..++ ...+..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3445566666666666666543 33445566666666666666666666666665421111 2345666666666777
Q ss_pred hHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHH
Q 047305 184 TEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDF----VAYNALLNGFCKLRRVDEALA 259 (767)
Q Consensus 184 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~ 259 (767)
+++|..+|+++.+.. .++..++..++.++...|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++++|..
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 777777777766542 224556666677777777777777777776654322211 133445556666777777777
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 047305 260 LLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGI 339 (767)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 339 (767)
.++++.+.. +.+...+..+...+.+.|++++|..+++++...++.....+++.++.+|...|++++|...++++.+..
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~- 279 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY- 279 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 777776543 223445666667777777777777777777665333224456667777777777777777777776653
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHH
Q 047305 340 VPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCR---NGMVDDAQKLFNKMEKAGCFPSVG 414 (767)
Q Consensus 340 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~ 414 (767)
|+...+..++..+.+.|++++|..+++++.+.. |+...++.++..+.. .|+..++..+++++.+.++.|++.
T Consensus 280 -p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~--P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 -PGADLLLALAQLLEEQEGPEAAQALLREQLRRH--PSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred -CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--cCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 344455667777777777777777777766653 566666666665553 446777777777777665555543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.6e-17 Score=177.17 Aligned_cols=450 Identities=11% Similarity=0.025 Sum_probs=295.7
Q ss_pred HHHccCCHhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHH--HHHHHhcC
Q 047305 212 GLCQINRADEAYRLFLKMKDSGCSPDF--VAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCL--IDGLFRAK 287 (767)
Q Consensus 212 ~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~~ 287 (767)
...+.|+++.|++.|++..+. .|+. ..+ .++..+...|+.++|+..+++.... .+...+..+ ...+...|
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p---~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS---MNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC---CCCCHHHHHHHHHHHHHcC
Confidence 445777777777777777765 3332 233 6666677777777777777777621 122223333 45666677
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047305 288 RYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQV 367 (767)
Q Consensus 288 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 367 (767)
++++|+++|+++.+..+. +...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|...++
T Consensus 117 dyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~e 193 (822)
T PRK14574 117 RWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASS 193 (822)
T ss_pred CHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHH
Confidence 777777777777776544 4555556667777777777777777777665 3344444334334434455555777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchh
Q 047305 368 EIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTL 447 (767)
Q Consensus 368 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 447 (767)
++.+..+ .+...+..+.....+.|-...|.++.++-... -+...+..+- .+.|.+..+-... +
T Consensus 194 kll~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~---f~~~~~~~l~--------~~~~a~~vr~a~~---~-- 256 (822)
T PRK14574 194 EAVRLAP-TSEEVLKNHLEILQRNRIVEPALRLAKENPNL---VSAEHYRQLE--------RDAAAEQVRMAVL---P-- 256 (822)
T ss_pred HHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc---cCHHHHHHHH--------HHHHHHHHhhccc---c--
Confidence 7777653 45556666666667777776666555442211 0111111110 1111111111100 0
Q ss_pred hhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCH-----hhHHHHHHHHHhcCCHHHHHHHHHH
Q 047305 448 FLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESG-NLPDI-----ITYNSLINGFCKVGNINGALKLFKE 521 (767)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~ 521 (767)
... ..+-+ --.+.|+.-++.+...- ..|.. ....-.+.++...|++.++++.|+.
T Consensus 257 -------~~~--~~~r~----------~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~ 317 (822)
T PRK14574 257 -------TRS--ETERF----------DIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEA 317 (822)
T ss_pred -------ccc--chhhH----------HHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 000 00000 02355666666665421 11321 1222345677899999999999999
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC-----CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 047305 522 LQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNG-----CTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDI 596 (767)
Q Consensus 522 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 596 (767)
+...+.+....+-..++++|...+++++|..+++.+.... ..++......|.-+|...+++++|..+++++.+..
T Consensus 318 l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~ 397 (822)
T PRK14574 318 MEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQT 397 (822)
T ss_pred hhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 9988765444577889999999999999999999997642 12234445677888899999999999999999765
Q ss_pred CC------------Cc---cchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHH
Q 047305 597 SG------------RD---DESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVL 661 (767)
Q Consensus 597 p~------------~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 661 (767)
|. ++ .....++..+...|+..+|.+.+.++. ...|.++..+..++.++...|+..+|+..++.+
T Consensus 398 p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~-~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a 476 (822)
T PRK14574 398 PYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLS-STAPANQNLRIALASIYLARDLPRKAEQELKAV 476 (822)
T ss_pred CcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 51 11 223356888889999999999999963 346999999999999999999999999999888
Q ss_pred HHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 047305 662 VECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNY 710 (767)
Q Consensus 662 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 710 (767)
.... |.+..+....+.++...|++++|..+..+.++.. |+......
T Consensus 477 ~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~--Pe~~~~~~ 522 (822)
T PRK14574 477 ESLA-PRSLILERAQAETAMALQEWHQMELLTDDVISRS--PEDIPSQE 522 (822)
T ss_pred hhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC--CCchhHHH
Confidence 8776 7788888899999999999999999999998744 77765444
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-15 Score=142.08 Aligned_cols=489 Identities=14% Similarity=0.083 Sum_probs=318.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHH-HHHHHHHccCCHhHHHHHHHHHHHCCCCCCH----HHHH
Q 047305 168 IVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYT-IVISGLCQINRADEAYRLFLKMKDSGCSPDF----VAYN 242 (767)
Q Consensus 168 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~ 242 (767)
..+...|..-|.......+|+..++-+.+..+.|+...+. .+...+.+...+.+|++.|+..+..-...+. .+.+
T Consensus 201 fsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ 280 (840)
T KOG2003|consen 201 FSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILN 280 (840)
T ss_pred HHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHh
Confidence 3344445556666677888888888888777767655432 3455677778888888888877765222122 2334
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC------------CCHHH
Q 047305 243 ALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIE------------PDVVL 310 (767)
Q Consensus 243 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~------------~~~~~ 310 (767)
.+.-.+.+.|.++.|+..|+...+. .|+..+-..|+-++..-|+-++..+.|.+|+..... |+...
T Consensus 281 nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l 358 (840)
T KOG2003|consen 281 NIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL 358 (840)
T ss_pred hcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence 4444566888899999888888774 467666666777777788888888888888765322 23222
Q ss_pred HHHHHHH-----HHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 047305 311 YGVMIRG-----LSEAG--KVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTI 383 (767)
Q Consensus 311 ~~~l~~~-----~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 383 (767)
.+.-+.. .-+.+ +.++++-.-.+++.--+.|+- .. ..+-+.+.++.-.-..+..+. --.
T Consensus 359 l~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~f---a~---------g~dwcle~lk~s~~~~la~dl--ei~ 424 (840)
T KOG2003|consen 359 LNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDF---AA---------GCDWCLESLKASQHAELAIDL--EIN 424 (840)
T ss_pred HHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccch---hc---------ccHHHHHHHHHhhhhhhhhhh--hhh
Confidence 2222211 11100 111111111111111111111 00 011111111111110000010 011
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchH
Q 047305 384 LICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLC--KAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDK 461 (767)
Q Consensus 384 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (767)
-...+.+.|+++.|+++++-+.+.+.+.-...-+.|-..+. .-.++..|.++-+... .....++
T Consensus 425 ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~al--------------n~dryn~ 490 (840)
T KOG2003|consen 425 KAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIAL--------------NIDRYNA 490 (840)
T ss_pred HHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHh--------------cccccCH
Confidence 23357789999999999999887654433333333333322 2445667766665553 1222334
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 047305 462 ASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGL 541 (767)
Q Consensus 462 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 541 (767)
.....-.......|++++|.+.+++.+.....-....|| +.-.+...|+.++|++.|-.+... +.-+..++..+.+.|
T Consensus 491 ~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiy 568 (840)
T KOG2003|consen 491 AALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIY 568 (840)
T ss_pred HHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHH
Confidence 444444445567899999999999998663332233343 344567899999999999888754 233667888899999
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHH
Q 047305 542 QRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQ 621 (767)
Q Consensus 542 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 621 (767)
.-..+..+|++++-+.... ++.++.++..+.+.|-+.|+-.+|.+.+-+..+-+|.+..+.-+++.-|....-+++|+.
T Consensus 569 e~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~ 647 (840)
T KOG2003|consen 569 ELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAIN 647 (840)
T ss_pred HHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHH
Confidence 9999999999999888764 677899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCCccchHHHHHH-HhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHH
Q 047305 622 GLLEMDFKLNDFQLAPYTIWLIG-LCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVF 693 (767)
Q Consensus 622 ~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 693 (767)
.+++... ..|.... |..++.. +.+.|+|++|.++|+..... +|.|..++..|++++...|. .+|.++-
T Consensus 648 y~ekaal-iqp~~~k-wqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl-~d~key~ 716 (840)
T KOG2003|consen 648 YFEKAAL-IQPNQSK-WQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL-KDAKEYA 716 (840)
T ss_pred HHHHHHh-cCccHHH-HHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc-hhHHHHH
Confidence 9988543 3466666 7666654 55679999999999999877 48999999999999888874 4444443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.4e-15 Score=136.75 Aligned_cols=465 Identities=17% Similarity=0.228 Sum_probs=265.8
Q ss_pred HhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHH--HHhcCChhHH-HHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCH
Q 047305 73 LLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISG--YYKVGDCEKA-LESFGKMKEFDCQPDVYIYNAVLNIAFRKQLF 149 (767)
Q Consensus 73 l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 149 (767)
+..+|.+..+.-+++.|++.|++.++.+-..|++. |....++--| .+.|-.|...| ..+..+| +.|..
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--------K~G~v 195 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--------KSGAV 195 (625)
T ss_pred HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--------ccccH
Confidence 45577888888888888888888887776666553 3333333222 23444555444 2222333 23333
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHH
Q 047305 150 LLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKM 229 (767)
Q Consensus 150 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 229 (767)
.+ ++-+. .+.+..++.+||.++|+.-..+.|.+++++......+.+..+||.+|.+-.-.. ..++..+|
T Consensus 196 Ad---L~~E~----~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EM 264 (625)
T KOG4422|consen 196 AD---LLFET----LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEM 264 (625)
T ss_pred HH---HHHhh----cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHH
Confidence 22 22222 245666778888888888778888888887777666677778887776543322 26777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHH-HHHHHHHHHHC--
Q 047305 230 KDSGCSPDFVAYNALLNGFCKLRRVDE----ALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDE-AYAWYRKMFEE-- 302 (767)
Q Consensus 230 ~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-A~~~~~~~~~~-- 302 (767)
....+.||..|+|+++++..+.|+++. |.+++.+|.+.|+.|...+|..+|..+++.++..+ +..++.++...
T Consensus 265 isqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~lt 344 (625)
T KOG4422|consen 265 ISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLT 344 (625)
T ss_pred HHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhc
Confidence 777778888888888888888776654 45666777777888888888877777777766533 44455554432
Q ss_pred --CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047305 303 --KI---EP-DVVLYGVMIRGLSEAGKVKDAMKLLSDMRERG----IVPD---TYCYNALIKGFCDLGLLDQARSLQVEI 369 (767)
Q Consensus 303 --~~---~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~ 369 (767)
.. .| |...|...+..|.+..+.+-|.++-.-+.... +.|+ ..-|..+....+.....+.....++.+
T Consensus 345 GK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~l 424 (625)
T KOG4422|consen 345 GKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDL 424 (625)
T ss_pred cCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 12 33345566666777777777776665554321 2222 233455566666667777777777777
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhh
Q 047305 370 WKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFL 449 (767)
Q Consensus 370 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 449 (767)
+-.-.-|+..+...++.+..-.|.++-.-+++.++...|.+-+......++..+++..- +|
T Consensus 425 VP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~---------------hp---- 485 (625)
T KOG4422|consen 425 VPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKL---------------HP---- 485 (625)
T ss_pred ccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC---------------CC----
Confidence 76666667777777777777777777777777777765533233222222322322210 00
Q ss_pred hhccCCCCcchHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-C
Q 047305 450 RLSQGGNRVHDKASLQTMVEQYCTAGLIHKAY-KILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKG-L 527 (767)
Q Consensus 450 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 527 (767)
..+...-+...+.-+. -++.++. ..-.++.+..+ .....+.++..+.+.|..++|.+++..+.+.+ -
T Consensus 486 -------~tp~r~Ql~~~~ak~a--ad~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ 554 (625)
T KOG4422|consen 486 -------LTPEREQLQVAFAKCA--ADIKEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNK 554 (625)
T ss_pred -------CChHHHHHHHHHHHHH--HHHHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCc
Confidence 0010111111111100 0111111 11122333322 33445555666778888888888888875543 2
Q ss_pred CCChhhHH---HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHH
Q 047305 528 RPDSVTYG---TLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFS 587 (767)
Q Consensus 528 ~p~~~~~~---~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 587 (767)
-|.....+ -+++.-.+.+...+|...++-|...+.+.-...-+.+...|.-+....+|++
T Consensus 555 ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~iNqeq~~~ls 617 (625)
T KOG4422|consen 555 IPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICEGLAQRIMEDFAINQEQKEALS 617 (625)
T ss_pred CCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhcCcCHHHHHHHh
Confidence 23344444 4445556677788888888888766544333345555555443333344443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-16 Score=149.15 Aligned_cols=483 Identities=17% Similarity=0.113 Sum_probs=311.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHCCCCC----CHHHH
Q 047305 97 VSDVFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYN-AVLNIAFRKQLFLLALAVYYEMVKLNCLP----NIVTF 171 (767)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~ 171 (767)
+-.++..|...|..+..+.+|+..|+-+.+...-|+.-.+. .+.+.+.+.+.+..|+++|...+..-... ...+.
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 34455566777777888889999998888766666655432 34566778888999999888777652111 12334
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHH--------HHH
Q 047305 172 SLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVA--------YNA 243 (767)
Q Consensus 172 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--------~~~ 243 (767)
+.+.-.|.+.|+++.|...|+...+. .|+..+-..++-++...|+.++..+.|.+|...-..||..- -..
T Consensus 280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 44555577889999999999988775 57777766677777788898999999988875422222211 111
Q ss_pred HHHHHHhcC-----------CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 047305 244 LLNGFCKLR-----------RVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYG 312 (767)
Q Consensus 244 l~~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 312 (767)
|+.-..+.. +.++++-.-.++..--+.|+-. . -.+.+++.++.-....+..+.. -
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa---~---------g~dwcle~lk~s~~~~la~dle--i 423 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFA---A---------GCDWCLESLKASQHAELAIDLE--I 423 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchh---c---------ccHHHHHHHHHhhhhhhhhhhh--h
Confidence 222111111 1111211111221111111110 0 0122222222211110000110 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047305 313 VMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCD--LGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCR 390 (767)
Q Consensus 313 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 390 (767)
.-...+.++|+++.|.++++-+.+...+.-...-+.|...+.- -.++-.|.+.-+..+..+. -+......-.+.-..
T Consensus 424 ~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr-yn~~a~~nkgn~~f~ 502 (840)
T KOG2003|consen 424 NKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR-YNAAALTNKGNIAFA 502 (840)
T ss_pred hHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc-cCHHHhhcCCceeee
Confidence 1234578899999999999988877544333333433333332 3467777777666655432 233333333333456
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHH
Q 047305 391 NGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQ 470 (767)
Q Consensus 391 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 470 (767)
.|++++|...+++....+.......|+ +.-.+-..|+.++|+++|-++. .....+..++..+...
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh--------------~il~nn~evl~qiani 567 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLH--------------AILLNNAEVLVQIANI 567 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHH--------------HHHHhhHHHHHHHHHH
Confidence 799999999999998753322222232 3345677899999999998875 2234567788888889
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 047305 471 YCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDA 550 (767)
Q Consensus 471 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A 550 (767)
|....+...|++++.+.... ++.|+.....|...|-+.|+-..|.+.+-+--+. ++-+..+...|...|....-+++|
T Consensus 568 ye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~eka 645 (840)
T KOG2003|consen 568 YELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKA 645 (840)
T ss_pred HHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHH
Confidence 99999999999999887655 4557888888999999999998888876554433 344667888888888888888999
Q ss_pred HHHHHHhhhCCCCCCHhhHHHHHHH-HHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCC
Q 047305 551 FRIFGQMPQNGCTPSPAVYKSLMTW-SCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGE 615 (767)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 615 (767)
+.+|+++.- +.|+..-|..++.. +.+.|++.+|.++|....+.+|.+...+--++......|-
T Consensus 646 i~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 646 INYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 999998764 68998888876654 5678999999999999999999998887777776666553
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.7e-14 Score=132.17 Aligned_cols=445 Identities=15% Similarity=0.179 Sum_probs=300.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcC--CHH-HHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047305 100 VFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQ--LFL-LALAVYYEMVKLNCLPNIVTFSLLIN 176 (767)
Q Consensus 100 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g--~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~ 176 (767)
+=+.|+.. ..+|...++.-+|++|.+.|++.+...-..|++..+-.+ +.- .-++.|-.|.+.| ..+..+|
T Consensus 118 ~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW----- 190 (625)
T KOG4422|consen 118 TENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW----- 190 (625)
T ss_pred chhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc-----
Confidence 33445544 356889999999999999888888877666665543322 222 2234444454444 2233333
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 047305 177 GLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDE 256 (767)
Q Consensus 177 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 256 (767)
+.|+..+ -+|+...+ +..++..+|.++|+.-..+.|.+++++......+.+..+||.+|.+-.- ..
T Consensus 191 ---K~G~vAd--L~~E~~PK-----T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~ 256 (625)
T KOG4422|consen 191 ---KSGAVAD--LLFETLPK-----TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SV 256 (625)
T ss_pred ---ccccHHH--HHHhhcCC-----CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hc
Confidence 4455443 44444433 7889999999999999999999999999887778899999999887543 22
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHH----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHH
Q 047305 257 ALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEA----YAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKD-AMKLL 331 (767)
Q Consensus 257 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~ 331 (767)
..+++.+|....+.||..|+|+++.+..+.|+++.| .+++.+|.+.|+.|...+|..++..+.+.++..+ +..++
T Consensus 257 ~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i 336 (625)
T KOG4422|consen 257 GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWI 336 (625)
T ss_pred cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHH
Confidence 378899999999999999999999999999987654 5677888999999999999999999998887644 44455
Q ss_pred HHHHHC----CCC---C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHhcCCHHH
Q 047305 332 SDMRER----GIV---P-DTYCYNALIKGFCDLGLLDQARSLQVEIWKRD----SLPN---THTFTILICGMCRNGMVDD 396 (767)
Q Consensus 332 ~~~~~~----~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~g~~~~ 396 (767)
.++... .++ | |...|...+..|.+..+.+.|.++..-..... +.|+ ..-|..+....|+....+.
T Consensus 337 ~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~ 416 (625)
T KOG4422|consen 337 NDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDV 416 (625)
T ss_pred HHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554332 222 2 44667778888889999999988766554321 1122 2346677788888899999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCC
Q 047305 397 AQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGL 476 (767)
Q Consensus 397 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 476 (767)
-...|+.|.-.-..|+..+...++++....+.++-.-+++.++.. +...-+
T Consensus 417 ~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~-----------------------------~ght~r 467 (625)
T KOG4422|consen 417 TLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE-----------------------------YGHTFR 467 (625)
T ss_pred HHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH-----------------------------hhhhhh
Confidence 999999998777778888989999998889999888888887741 111112
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 047305 477 IHKAYKILMQLAESGNLPDIITYNSLINGFCKV--GNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIF 554 (767)
Q Consensus 477 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~ 554 (767)
-+--.+++..+.+....|+...-..+-....+. .-.+.....-.++....+ .....+.++-.+.+.|.+++|.+++
T Consensus 468 ~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l 545 (625)
T KOG4422|consen 468 SDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEML 545 (625)
T ss_pred HHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHH
Confidence 223345555555554444433222222222211 111222222334444433 3445666667788999999999999
Q ss_pred HHhhhCC-CCCCHhh---HHHHHHHHHhcCChhHHHHHHHHHHhcc
Q 047305 555 GQMPQNG-CTPSPAV---YKSLMTWSCRRRKFSLAFSLWLQYLRDI 596 (767)
Q Consensus 555 ~~~~~~~-~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 596 (767)
....+.+ --|.... ...+++...+.+...+|..+++-++..+
T Consensus 546 ~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 546 GLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 9885532 2233333 3456666677788889988888776543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.4e-18 Score=168.18 Aligned_cols=262 Identities=16% Similarity=0.094 Sum_probs=119.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCC-CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 047305 418 ALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGN-RVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDI 496 (767)
Q Consensus 418 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 496 (767)
.+...+.+.|++++|++++++... .. .+.+...+..+.......++.+.|...++++...+.. +.
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~-------------~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~ 78 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQ-------------KIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NP 78 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccc-------------cccccccccccccccccccccccccccccccccccccccc-cc
Confidence 446667777788888777754321 11 2345556666666777778888888888888766433 45
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCCHhhHHHHHHH
Q 047305 497 ITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNG-CTPSPAVYKSLMTW 575 (767)
Q Consensus 497 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~ 575 (767)
..+..++.. ...+++++|..++....+. .++...+..++..+...++++++..+++.+.... .+.+...|..++.+
T Consensus 79 ~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~ 155 (280)
T PF13429_consen 79 QDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEI 155 (280)
T ss_dssp ------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHH
T ss_pred ccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence 566666666 6889999999999887665 3466667788888999999999999999987532 35677888899999
Q ss_pred HHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHH
Q 047305 576 SCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEAL 655 (767)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 655 (767)
+.+.|+.++|+..|+++++..|+++.+...++..+...|+.+++.+.+...... .|.++..+..++.+|...|++++|+
T Consensus 156 ~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~-~~~~~~~~~~la~~~~~lg~~~~Al 234 (280)
T PF13429_consen 156 YEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA-APDDPDLWDALAAAYLQLGRYEEAL 234 (280)
T ss_dssp HHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH-CcCHHHHHHHHHHHhcccccccccc
Confidence 999999999999999999999999999999999999999999987777775433 2778888999999999999999999
Q ss_pred HHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 656 NIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
.+|+++.+.+ |.|+.+...+++++...|+.++|..+++++.+
T Consensus 235 ~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 235 EYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHS-TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccc-cccccccccccccccccccccccccccccccc
Confidence 9999999987 88999999999999999999999999998764
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.1e-14 Score=139.68 Aligned_cols=284 Identities=10% Similarity=0.006 Sum_probs=218.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047305 412 SVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESG 491 (767)
Q Consensus 412 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 491 (767)
+........+-+...+++.+..++++.+. ...+.....+..-+.++...|+..+-..+-.++.+.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~ll--------------e~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y 308 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELL--------------EKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY 308 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHH--------------hhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC
Confidence 44455555566666677777777776664 2334444455555556666666666666666666663
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHH
Q 047305 492 NLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKS 571 (767)
Q Consensus 492 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 571 (767)
+....+|-++..-|...|+..+|.+.|.+....+.. =...|.....++.-.|..++|+..+..+.+.- +-...-+-.
T Consensus 309 -P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LY 385 (611)
T KOG1173|consen 309 -PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLY 385 (611)
T ss_pred -CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHH
Confidence 336789999998898999999999999998865322 23578899999999999999999998887641 111111222
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcC---CC----CCccchHHHHHH
Q 047305 572 LMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKL---ND----FQLAPYTIWLIG 644 (767)
Q Consensus 572 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~p----~~~~~~~~l~~~ 644 (767)
+.--|.+.++++-|.++|.+++...|.+|.+...++-+....+.+.+|...|....... .+ ..| .+++||.+
T Consensus 386 lgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p-~~~NLGH~ 464 (611)
T KOG1173|consen 386 LGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEP-TLNNLGHA 464 (611)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhH-HHHhHHHH
Confidence 33448889999999999999999999999999999999999999999998888832111 11 222 38999999
Q ss_pred HhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 047305 645 LCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLL 716 (767)
Q Consensus 645 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~ 716 (767)
|.+.+++++|+..+++++... |.+..++..+|.+|...|+++.|++.|.+++. +.|+..+...++....
T Consensus 465 ~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 465 YRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 999999999999999999997 99999999999999999999999999999985 6799988777766544
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.5e-13 Score=126.26 Aligned_cols=479 Identities=10% Similarity=0.021 Sum_probs=312.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047305 167 NIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLN 246 (767)
Q Consensus 167 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 246 (767)
+...|..-...=...+++..|.++|++.+.... .+...|...+..=.++.....|..++++....-...|. .|-.-+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~-r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDY-RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHH
Confidence 333444444444455677778888888877543 26666777777777888888888888888764222222 2333344
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 047305 247 GFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKD 326 (767)
Q Consensus 247 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 326 (767)
+=-..|++..|.++|+.-.+ ..|+...|.+.|..-.+-..++.|..+|+...-. .|++.+|-.....-.++|+...
T Consensus 150 mEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHH
Confidence 44567888999999988877 4788889999999888888999999999888765 5788888888888888899999
Q ss_pred HHHHHHHHHHC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047305 327 AMKLLSDMRER-GI-VPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPN-THTFTILICGMCRNGMVDDAQKLFNK 403 (767)
Q Consensus 327 a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 403 (767)
+..+|....+. |- ..+...++++...-.++..++.|.-+++-.+..-+... ...|..+...--+.|+........-.
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~ 305 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG 305 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence 98888887664 11 11234455555555566778888888887776643221 23343333333334443222211100
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHH
Q 047305 404 MEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKI 483 (767)
Q Consensus 404 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 483 (767)
= +. --+++.. ...+.|-.+|...+..-...|+.+...++
T Consensus 306 K--------------------Rk-------~qYE~~v--------------~~np~nYDsWfdylrL~e~~g~~~~Ire~ 344 (677)
T KOG1915|consen 306 K--------------------RK-------FQYEKEV--------------SKNPYNYDSWFDYLRLEESVGDKDRIRET 344 (677)
T ss_pred h--------------------hh-------hHHHHHH--------------HhCCCCchHHHHHHHHHHhcCCHHHHHHH
Confidence 0 00 0011111 11223333444444444444444445555
Q ss_pred HHHHHHcCCCCCH--hhHH--------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH----HHHHHHHhcCCHHH
Q 047305 484 LMQLAESGNLPDI--ITYN--------SLINGFCKVGNINGALKLFKELQLKGLRPDSVTYG----TLINGLQRVDREED 549 (767)
Q Consensus 484 ~~~~~~~~~~~~~--~~~~--------~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~~~~~~ 549 (767)
++.+...- +|-. ..|. ..+-.-....+++.+.++++..++. ++....||. ..+....+..+...
T Consensus 345 yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ 422 (677)
T KOG1915|consen 345 YERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTG 422 (677)
T ss_pred HHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHH
Confidence 55444331 2210 1111 1111123567888899999988874 222334443 33444567889999
Q ss_pred HHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 047305 550 AFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFK 629 (767)
Q Consensus 550 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (767)
|.+++..++ |.-|...++...+..=.+.++++....+|++.++-.|.+-.++...+..-...|+.+.|..++.-...+
T Consensus 423 ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 423 ARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred HHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 999999887 578899999999999889999999999999999999999999999999999999999997666653332
Q ss_pred CCCCCcc-chHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHH-----hcC-----------ChhHHHHH
Q 047305 630 LNDFQLA-PYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLC-----KRG-----------YLDLAMDV 692 (767)
Q Consensus 630 ~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g-----------~~~~A~~~ 692 (767)
..-+.|. .|-..+..-...|.+++|..+|++.++.. +...+|..++..-. ..| +...|+.+
T Consensus 501 p~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~i 578 (677)
T KOG1915|consen 501 PALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKI 578 (677)
T ss_pred cccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHH
Confidence 2222222 35555556667899999999999999875 55558888776544 445 67789999
Q ss_pred HHHHHH
Q 047305 693 FLYTLK 698 (767)
Q Consensus 693 ~~~~~~ 698 (767)
|+++..
T Consensus 579 ferAn~ 584 (677)
T KOG1915|consen 579 FERANT 584 (677)
T ss_pred HHHHHH
Confidence 998865
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.7e-14 Score=137.46 Aligned_cols=421 Identities=13% Similarity=0.021 Sum_probs=246.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 047305 244 LLNGFCKLRRVDEALALLRSFEKDGFVPR-LGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAG 322 (767)
Q Consensus 244 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 322 (767)
..+-|.+.|++++|++.+.+.++. .|+ +..|.....+|...|+++++.+-.-+.++.++. -+..+..-..++-+.|
T Consensus 121 ~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 121 KGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAHEQLG 197 (606)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHHhhc
Confidence 445567778888888888887774 455 677778888888888888887777777765322 2334555556666677
Q ss_pred CHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-C--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 047305 323 KVKDAMKLLSDMRER-GIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKR-D--SLPNTHTFTILICGMCRNGMVDDAQ 398 (767)
Q Consensus 323 ~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~--~~~~~~~~~~l~~~~~~~g~~~~A~ 398 (767)
++++|+.-..-..-. |+. |..+--.+=+.+- ..|.....+-.+. + ..|+.....+....+...
T Consensus 198 ~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lk-----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~------- 264 (606)
T KOG0547|consen 198 KFDEALFDVTVLCILEGFQ-NASIEPMAERVLK-----KQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD------- 264 (606)
T ss_pred cHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHH-----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc-------
Confidence 777765433322211 111 2111111111111 1222222222221 1 123333222222222100
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHH----H-cCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcch------HHHHHHH
Q 047305 399 KLFNKMEKAGCFPSVGMFNALIDGLC----K-AGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHD------KASLQTM 467 (767)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~l~~~~~----~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l 467 (767)
.......+.......+..++. . ...+.+|...+.+-....... ......| ..+....
T Consensus 265 -----~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~-------~~~n~~d~~le~~A~al~~~ 332 (606)
T KOG0547|consen 265 -----PKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESS-------LSVNEIDAELEYMAEALLLR 332 (606)
T ss_pred -----ccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhh-------ccccccchhHHHHHHHHHHh
Confidence 000000001111111111111 1 112344444333321100000 0000011 1122222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 047305 468 VEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDRE 547 (767)
Q Consensus 468 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 547 (767)
+..+.-.|+.-.|..-|+..+.....++ ..|-.+..+|....+.++....|+...+.+.. ++.+|..-...+.-.+++
T Consensus 333 gtF~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~ 410 (606)
T KOG0547|consen 333 GTFHFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQY 410 (606)
T ss_pred hhhhhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHH
Confidence 3334456788888888888877754432 23667777888888888888888888877543 667777777777777888
Q ss_pred HHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHH-h
Q 047305 548 EDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLE-M 626 (767)
Q Consensus 548 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~ 626 (767)
++|..-|++.+... +.+...|..+.-+..+.++++++...|+++.+.+|.-+.+++..+.++..++++++|++.+.. +
T Consensus 411 e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 411 EEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 88888888888743 234445555555556778888888888888888888888888888888888888888888877 4
Q ss_pred hhcCCCC------CccchHHHHHHHh-hcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 627 DFKLNDF------QLAPYTIWLIGLC-QDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 627 ~~~~~p~------~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
+.. |. ++..+..-+-+.. -.+++..|+.++.++.+.+ |...-++..|+..-...|+.++|+++|++...
T Consensus 490 ~LE--~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 490 ELE--PREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hhc--cccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 432 44 4443433333222 2478888888888888887 67777888888888888888999988888764
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.6e-16 Score=155.28 Aligned_cols=291 Identities=13% Similarity=0.017 Sum_probs=239.3
Q ss_pred CCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHhhHHHHHH
Q 047305 427 GELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNL--PDIITYNSLIN 504 (767)
Q Consensus 427 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~ 504 (767)
=+..+|+..|.++. .....+..+...++.+|...+++++|.++|+.+.+..+. .+...|...+.
T Consensus 333 y~~~~A~~~~~klp--------------~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LW 398 (638)
T KOG1126|consen 333 YNCREALNLFEKLP--------------SHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLW 398 (638)
T ss_pred HHHHHHHHHHHhhH--------------HhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHH
Confidence 35678888888854 223345577888999999999999999999999876321 25566666654
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-CHhhHHHHHHHHHhcCChh
Q 047305 505 GFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTP-SPAVYKSLMTWSCRRRKFS 583 (767)
Q Consensus 505 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 583 (767)
-+ .+.-+---+-+.+.+.. +-.+.+|..+.++|.-.++.+.|++.|+++++. .| ...+|..++.-+....++|
T Consensus 399 HL---q~~v~Ls~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d 472 (638)
T KOG1126|consen 399 HL---QDEVALSYLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFD 472 (638)
T ss_pred HH---HhhHHHHHHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHH
Confidence 33 22222222334444442 335679999999999999999999999999984 45 6778888888899999999
Q ss_pred HHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHH
Q 047305 584 LAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVE 663 (767)
Q Consensus 584 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 663 (767)
.|...|+.++..+|.+-.+|+.++.+|.++++++.|.-.+++. ..+.|.+......++.++-+.|+.++|+.+++++..
T Consensus 473 ~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA-~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ 551 (638)
T KOG1126|consen 473 KAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKA-VEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH 551 (638)
T ss_pred hHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhh-hcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh
Confidence 9999999999999999999999999999999999996666653 457899999999999999999999999999999999
Q ss_pred cCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCCCCC
Q 047305 664 CKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCRMKSVGYDLDA 742 (767)
Q Consensus 664 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~ 742 (767)
.+ +.|+-+....+.++...+++++|...+++..+ +-|+....++++.-.+++.|+ .+.|+.-+-.+.+.+-++..
T Consensus 552 ld-~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~-~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 552 LD-PKNPLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGN-TDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred cC-CCCchhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHcc-chHHHHhhHHHhcCCCccch
Confidence 98 89999999999999999999999999999976 569999999999888888888 89999988888876544433
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.9e-14 Score=131.88 Aligned_cols=363 Identities=10% Similarity=-0.064 Sum_probs=232.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHH
Q 047305 340 VPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVG--MFN 417 (767)
Q Consensus 340 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~ 417 (767)
..|...+-.....+.+.|....|+..+...+..-+ ..-..|..|... ..+.+.+.. +...+ ..+.. .--
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P-~~W~AWleL~~l---it~~e~~~~----l~~~l-~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYP-WFWSAWLELSEL---ITDIEILSI----LVVGL-PSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCC-cchHHHHHHHHh---hchHHHHHH----HHhcC-cccchHHHHH
Confidence 33555555555556667777778877777665432 233333333222 222222222 11111 11111 111
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CC
Q 047305 418 ALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNL--PD 495 (767)
Q Consensus 418 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~ 495 (767)
-+..++......++++.-.+... .-+.+.....-+..+.+.-...++++|+.+|+++.+..+- .|
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~-------------~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~d 298 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLS-------------SVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDD 298 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------------hccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchh
Confidence 23344555556666665555542 1223444445555566666778888888888888776332 24
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHH
Q 047305 496 IITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTW 575 (767)
Q Consensus 496 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 575 (767)
..+|..++-. +..+ ..+.++.+-...=-+..+.|...+.+.|+-.++.++|..+|+++++.+ +.....|..++.-
T Consensus 299 mdlySN~LYv--~~~~--skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHE 373 (559)
T KOG1155|consen 299 MDLYSNVLYV--KNDK--SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHE 373 (559)
T ss_pred HHHHhHHHHH--Hhhh--HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHH
Confidence 5566655533 2221 222222222211113345677778888888889999999999998864 4456677777788
Q ss_pred HHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHH
Q 047305 576 SCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEAL 655 (767)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 655 (767)
|...++...|++.|+.+++.+|-|-.+|+.++.+|...+-+.=|+-.+++.. ...|.++..|..||.+|.+.++.++|+
T Consensus 374 yvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~-~~kPnDsRlw~aLG~CY~kl~~~~eAi 452 (559)
T KOG1155|consen 374 YVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL-ELKPNDSRLWVALGECYEKLNRLEEAI 452 (559)
T ss_pred HHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH-hcCCCchHHHHHHHHHHHHhccHHHHH
Confidence 9999999999999999999999999999999999999999888877777732 245999999999999999999999999
Q ss_pred HHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhhcCCccHHHHHHHH
Q 047305 656 NIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKN----GFILR-PRVCNYLLRSLLFSKDNKKVHAYHLL 730 (767)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~l~~~~~~~~~~a~~~~ 730 (767)
..|+++...+ .-+..+++.|++.|.+.++.++|..+|++-++. |...+ -.-....++.+..+.++ +++|....
T Consensus 453 KCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~-~~~As~Ya 530 (559)
T KOG1155|consen 453 KCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKD-FDEASYYA 530 (559)
T ss_pred HHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcc-hHHHHHHH
Confidence 9999999887 567788999999999999999999999988763 22222 12222234444435555 66665544
Q ss_pred HH
Q 047305 731 CR 732 (767)
Q Consensus 731 ~~ 732 (767)
.+
T Consensus 531 ~~ 532 (559)
T KOG1155|consen 531 TL 532 (559)
T ss_pred HH
Confidence 44
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.3e-14 Score=133.73 Aligned_cols=221 Identities=12% Similarity=0.066 Sum_probs=181.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHH
Q 047305 506 FCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLA 585 (767)
Q Consensus 506 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 585 (767)
+.-.|+.-.|..-|+..+.....++.. |..+...|....+..+....|.++...+ +.++.+|..-..++.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 445788999999999999875443332 7788888999999999999999998865 45677888888888888999999
Q ss_pred HHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 047305 586 FSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECK 665 (767)
Q Consensus 586 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 665 (767)
..-|++++..+|++..++..++-+..+.+++++++..|.+...+ .|..+..|+..+.++..++++++|++.|+++++..
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999996544 69999999999999999999999999999998875
Q ss_pred CCC------ChHhHHHHHHH-HHhcCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhhcCCccHHHHHHHHHHHH
Q 047305 666 AIV------TPPSCVKLIHG-LCKRGYLDLAMDVFLYTLKNGFILRPRVCN-YLLRSLLFSKDNKKVHAYHLLCRMK 734 (767)
Q Consensus 666 ~~~------~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~~~a~~~~~~~~ 734 (767)
+. ++..+.+-+-+ +...+++..|..+++++++.+ |...... .+....+ +.|+ .++|.++|++-.
T Consensus 493 -~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~D--pkce~A~~tlaq~~l-Q~~~-i~eAielFEksa 564 (606)
T KOG0547|consen 493 -PREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELD--PKCEQAYETLAQFEL-QRGK-IDEAIELFEKSA 564 (606)
T ss_pred -cccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccC--chHHHHHHHHHHHHH-HHhh-HHHHHHHHHHHH
Confidence 33 44444443333 235699999999999998744 6655533 3555555 8887 999999999854
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-14 Score=149.15 Aligned_cols=290 Identities=13% Similarity=0.040 Sum_probs=195.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcch-HHHHHHH
Q 047305 390 RNGMVDDAQKLFNKMEKAGCFPSV-GMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHD-KASLQTM 467 (767)
Q Consensus 390 ~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l 467 (767)
..|+++.|.+.+.+..+.. |++ ..+.....+..+.|+++.|...+.+... ..+.+ .......
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~--------------~~p~~~l~~~~~~ 159 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAE--------------LAGNDNILVEIAR 159 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------------hCCcCchHHHHHH
Confidence 4677777777777666543 332 2333445566667777777777777631 11111 1233334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH----HHHHHHHh
Q 047305 468 VEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYG----TLINGLQR 543 (767)
Q Consensus 468 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~----~l~~~~~~ 543 (767)
...+...|+++.|...++.+.+..+ .+...+..+...+...|++++|.+.+..+.+.++. +...+. ........
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLD 237 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHH
Confidence 6667777888888888888777643 25667778888888888998888888888887644 332221 11111122
Q ss_pred cCCHHHHHHHHHHhhhCC---CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHH--HHHHHhcCCHHH
Q 047305 544 VDREEDAFRIFGQMPQNG---CTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKS--IEEFLQKGEVEN 618 (767)
Q Consensus 544 ~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l--~~~~~~~g~~~~ 618 (767)
.+..+++.+.+..+.+.. .+.++..+..++..+...|++++|.+.+++.++..|++....... .......++.++
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHH
Confidence 333333344555554432 124778888888899999999999999999999999887653222 222334577777
Q ss_pred HHHHHHHhhhcCCCCCc--cchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047305 619 AIQGLLEMDFKLNDFQL--APYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYT 696 (767)
Q Consensus 619 A~~~~~~~~~~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 696 (767)
+.+.+++.. +..|+++ ....++|+++.+.|++++|.+.|+++......|++..+.+++..+.+.|+.++|.++|+++
T Consensus 318 ~~~~~e~~l-k~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 318 LEKLIEKQA-KNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHH-HhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 766666632 3468888 8788999999999999999999996443333678888889999999999999999999987
Q ss_pred HH
Q 047305 697 LK 698 (767)
Q Consensus 697 ~~ 698 (767)
+.
T Consensus 397 l~ 398 (409)
T TIGR00540 397 LG 398 (409)
T ss_pred HH
Confidence 54
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.8e-13 Score=126.99 Aligned_cols=386 Identities=13% Similarity=0.004 Sum_probs=268.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--H
Q 047305 303 KIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTH--T 380 (767)
Q Consensus 303 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~ 380 (767)
+...|...+-...-.+.+.|....|.+.|......- +-.-..|..|...+ .+.+.+.. ... +...+.. .
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e~~~~----l~~-~l~~~~h~M~ 229 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIEILSI----LVV-GLPSDMHWMK 229 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHHHHHH----HHh-cCcccchHHH
Confidence 334466666666666778899999999998887652 22445555444432 22222222 111 1211111 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcch
Q 047305 381 FTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHD 460 (767)
Q Consensus 381 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (767)
=-.+..++....+.+++..-.+.....|...+...-+....+.-...++++|+.+|+++... .| -...+
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn-DP----------YRl~d 298 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKN-DP----------YRLDD 298 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc-CC----------Ccchh
Confidence 12334556666688888888888888887766666666666677888999999999998633 22 12234
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 047305 461 KASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLING 540 (767)
Q Consensus 461 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 540 (767)
..+|...+-+-..... +..+.+-.-.-.+-.+.|...+.+-|.-.++.++|+..|+...+.+.+ ....|..+..-
T Consensus 299 mdlySN~LYv~~~~sk----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHE 373 (559)
T KOG1155|consen 299 MDLYSNVLYVKNDKSK----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHE 373 (559)
T ss_pred HHHHhHHHHHHhhhHH----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHH
Confidence 4555554433322111 111111111101223456667778888899999999999999987533 44578888899
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHH
Q 047305 541 LQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAI 620 (767)
Q Consensus 541 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 620 (767)
|...++...|++-++.+++.+ +-|-..|-.++.+|.-.+...-|.-+|+++.+.-|+|+..+..++.+|.+.++.++|+
T Consensus 374 yvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAi 452 (559)
T KOG1155|consen 374 YVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAI 452 (559)
T ss_pred HHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHH
Confidence 999999999999999999864 5578899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHH----cCC--CCChHhHHHHHHHHHhcCChhHHHHHHH
Q 047305 621 QGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVE----CKA--IVTPPSCVKLIHGLCKRGYLDLAMDVFL 694 (767)
Q Consensus 621 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 694 (767)
+.+.+.-.-.+. +..++..|+..|-+.++.++|..+|++-++ .|. +....+...|+.-+.+.+++++|..+..
T Consensus 453 KCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 453 KCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred HHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 999995433233 345699999999999999999999999765 221 2234455557778889999999988776
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHH
Q 047305 695 YTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCRMKS 735 (767)
Q Consensus 695 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~ 735 (767)
.... | +.-.+||..++++++.
T Consensus 532 ~~~~-~-------------------~~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 532 LVLK-G-------------------ETECEEAKALLREIRK 552 (559)
T ss_pred HHhc-C-------------------CchHHHHHHHHHHHHH
Confidence 6542 1 1125777778777764
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.6e-14 Score=145.22 Aligned_cols=291 Identities=12% Similarity=-0.024 Sum_probs=218.4
Q ss_pred HHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 047305 424 CKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLI 503 (767)
Q Consensus 424 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 503 (767)
...|+++.|.+.+.+.. ...+.....+..........|+.+.|.+.+.++.+....+.........
T Consensus 95 ~~~g~~~~A~~~l~~~~--------------~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a 160 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNA--------------DHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIART 160 (409)
T ss_pred HhCCCHHHHHHHHHHHh--------------hcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHH
Confidence 45799999999998764 1122234445566788889999999999999988764333333334457
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHH-HHHHH---HHhc
Q 047305 504 NGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYK-SLMTW---SCRR 579 (767)
Q Consensus 504 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~---~~~~ 579 (767)
..+...|+++.|...++.+.+..+. +...+..+...+...|++++|.+++..+.+.+.. +...+. .-... ....
T Consensus 161 ~l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 161 RILLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHH
Confidence 7788999999999999999988533 5567888899999999999999999999987643 333332 11111 1233
Q ss_pred CChhHHHHHHHHHHhccC----CCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccch--HHHHHHHhhcCCHHH
Q 047305 580 RKFSLAFSLWLQYLRDIS----GRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPY--TIWLIGLCQDGQVKE 653 (767)
Q Consensus 580 g~~~~A~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~--~~l~~~~~~~g~~~~ 653 (767)
+..+++.+.+.++.+..| .++.....++..+...|++++|.+.+.+... ..|++.... ..........++.+.
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~-~~pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK-KLGDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh-hCCCcccchhHHHHHhhhcCCCChHH
Confidence 344445556777777666 5888889999999999999999999999432 246665422 233333445688999
Q ss_pred HHHHHHHHHHcCCCCCh--HhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHH
Q 047305 654 ALNIFSVLVECKAIVTP--PSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLC 731 (767)
Q Consensus 654 A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~ 731 (767)
+++.+++..+.. |.|+ .....+|+++.+.|++++|+++|+++......|++..+.++...+. +.|+ .++|.++++
T Consensus 318 ~~~~~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~-~~g~-~~~A~~~~~ 394 (409)
T TIGR00540 318 LEKLIEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFD-QAGD-KAEAAAMRQ 394 (409)
T ss_pred HHHHHHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHH-HcCC-HHHHHHHHH
Confidence 999999999886 8888 8888999999999999999999995443345699988887777776 8888 999999999
Q ss_pred HHH
Q 047305 732 RMK 734 (767)
Q Consensus 732 ~~~ 734 (767)
+..
T Consensus 395 ~~l 397 (409)
T TIGR00540 395 DSL 397 (409)
T ss_pred HHH
Confidence 864
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.1e-15 Score=147.91 Aligned_cols=283 Identities=18% Similarity=0.077 Sum_probs=225.8
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHH
Q 047305 393 MVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYC 472 (767)
Q Consensus 393 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 472 (767)
+..+|+..|..+..+- .-+......+..+|...+++++|..+|+.+.... .-...+.+.|.+.+..+-
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~-----------p~rv~~meiyST~LWHLq 401 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIE-----------PYRVKGMEIYSTTLWHLQ 401 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----------cccccchhHHHHHHHHHH
Confidence 5678888888865542 2345677788889999999999999998885221 123345556655554432
Q ss_pred hcCCHHHHHHHHH-HHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHH
Q 047305 473 TAGLIHKAYKILM-QLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRP-DSVTYGTLINGLQRVDREEDA 550 (767)
Q Consensus 473 ~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A 550 (767)
+ +-++..+. .+.+. .+-.+.+|-++..+|.-+++++.|++.|++.+.. .| ...+|..+..-+.....+|.|
T Consensus 402 ~----~v~Ls~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a 474 (638)
T KOG1126|consen 402 D----EVALSYLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKA 474 (638)
T ss_pred h----hHHHHHHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhH
Confidence 2 12233332 33333 2446789999999999999999999999999976 44 566888888888889999999
Q ss_pred HHHHHHhhhCCCCCCHhhH---HHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhh
Q 047305 551 FRIFGQMPQNGCTPSPAVY---KSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMD 627 (767)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 627 (767)
...|+.++. .++..| ..++.+|.+.++++.|.-.|+++++.+|.+......++..+.+.|+.++|+..+.+.-
T Consensus 475 ~~~fr~Al~----~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~ 550 (638)
T KOG1126|consen 475 MKSFRKALG----VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAI 550 (638)
T ss_pred HHHHHhhhc----CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHH
Confidence 999999974 344444 4556679999999999999999999999999999999999999999999998888842
Q ss_pred hcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047305 628 FKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 628 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 700 (767)
..+|.++..-...+.++...+++++|+..++++.+.- |.+..++..+|.+|.+.|+.+.|+..|--|....
T Consensus 551 -~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 551 -HLDPKNPLCKYHRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred -hcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 2468888889999999999999999999999999885 8888999999999999999999999999886643
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-11 Score=116.79 Aligned_cols=441 Identities=12% Similarity=0.057 Sum_probs=245.3
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHccCCHhHHH
Q 047305 145 RKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNK-FTYTIVISGLCQINRADEAY 223 (767)
Q Consensus 145 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~ 223 (767)
.++++..|..+|++.+... ..+...|..-+.+=.++.....|..+|++.... -|.+ ..|-..+..=-..|+...|.
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHH
Confidence 3444444555555554432 333344444444444445555555555554442 1211 11222222223345555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHC-
Q 047305 224 RLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEE- 302 (767)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~- 302 (767)
++|++..+ ..|+...|.+.++.=.+-+.++.|..+++..+-. .|++..|......-.++|...-|..+|....+.
T Consensus 162 qiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~ 237 (677)
T KOG1915|consen 162 QIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFL 237 (677)
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 55555444 2455555555555555555555555555555432 345555555555555555555555555544432
Q ss_pred CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHH--------HHHHHHh
Q 047305 303 KI-EPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPD--TYCYNALIKGFCDLGLLDQARS--------LQVEIWK 371 (767)
Q Consensus 303 ~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~--------~~~~~~~ 371 (767)
|- .-+...+++....-..+..++.|.-+|+-.... ++.+ ...|..+...--+-|+...... -++..++
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~ 316 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS 316 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence 10 001222333333333444555555555555543 1112 2223333222223333222222 1333444
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHH--------HHHHHcCCHHHHHHHHHHhhc
Q 047305 372 RDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSV--GMFNALI--------DGLCKAGELEKANLLFYKMEI 441 (767)
Q Consensus 372 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~--------~~~~~~~~~~~A~~~~~~~~~ 441 (767)
.++ .|-.+|-..+..-...|+.+...++|++.+.. ++|-. ..|...| -.-....+.+.+.++|+....
T Consensus 317 ~np-~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~ 394 (677)
T KOG1915|consen 317 KNP-YNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD 394 (677)
T ss_pred hCC-CCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 443 45566666666666677777777777777653 33311 1222211 112345777788888877642
Q ss_pred CCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 047305 442 GKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKE 521 (767)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 521 (767)
- .| ...-.-...|...+....++.++..|.+++..++.. .|...++...|..-.+.++++.+..+++.
T Consensus 395 l-IP---------HkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cPK~KlFk~YIelElqL~efDRcRkLYEk 462 (677)
T KOG1915|consen 395 L-IP---------HKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK--CPKDKLFKGYIELELQLREFDRCRKLYEK 462 (677)
T ss_pred h-cC---------cccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 1 01 000112334555566667888999999999887754 67788888888888899999999999999
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCc
Q 047305 522 LQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNG-CTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRD 600 (767)
Q Consensus 522 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 600 (767)
.+..++. +-.+|...+..-...|+.+.|..+|..++... .......+...++-=...|.++.|..+|+++++..+.-.
T Consensus 463 fle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 463 FLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK 541 (677)
T ss_pred HHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch
Confidence 9988644 66788888887788899999999999998643 222344667777777788999999999999998766554
Q ss_pred cchHHHHHH
Q 047305 601 DESMKSIEE 609 (767)
Q Consensus 601 ~~~~~l~~~ 609 (767)
++...+..
T Consensus 542 -vWisFA~f 549 (677)
T KOG1915|consen 542 -VWISFAKF 549 (677)
T ss_pred -HHHhHHHH
Confidence 55554433
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.5e-10 Score=109.22 Aligned_cols=574 Identities=12% Similarity=0.062 Sum_probs=302.0
Q ss_pred CcCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHH
Q 047305 95 SVVSDVFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKL-NCLPNIVTFSL 173 (767)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~ 173 (767)
.|+...|-.+=++ ++.++-...+|. ..|-..+..+.++|++..-...|+..+.. .+.....+|..
T Consensus 78 ~~T~~~~~~vn~c------~er~lv~mHkmp--------RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~l 143 (835)
T KOG2047|consen 78 CPTDPAYESVNNC------FERCLVFMHKMP--------RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDL 143 (835)
T ss_pred CCCChHHHHHHHH------HHHHHHHHhcCC--------HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHH
Confidence 3444445444333 344555555444 35666777777888888888888777654 33344556777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCC------CCCCHHHHHHHHHH
Q 047305 174 LINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSG------CSPDFVAYNALLNG 247 (767)
Q Consensus 174 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~ 247 (767)
.+......|-++.+..++++.++. ++..-+..|..++..+++++|.+.+...+... .+.+...|..+.+.
T Consensus 144 yl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdl 219 (835)
T KOG2047|consen 144 YLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDL 219 (835)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHH
Confidence 777777778888888888888775 45556777777888888888888887765321 12234456666665
Q ss_pred HHhcCCHHH---HHHHHHHHHhCCCCCC--cccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 047305 248 FCKLRRVDE---ALALLRSFEKDGFVPR--LGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAG 322 (767)
Q Consensus 248 ~~~~~~~~~---a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 322 (767)
.++.-+.-. ...+++.+... -+| -..|++|..-|.+.|.+++|..+|++.+.. ..+..-|..+..+|++-.
T Consensus 220 is~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FE 295 (835)
T KOG2047|consen 220 ISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFE 295 (835)
T ss_pred HHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHH
Confidence 555443322 23333433332 223 256788888888888888888888887765 223333444444444321
Q ss_pred C----------------------HHHHHHHHHHHHHCC-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047305 323 K----------------------VKDAMKLLSDMRERG-----------IVPDTYCYNALIKGFCDLGLLDQARSLQVEI 369 (767)
Q Consensus 323 ~----------------------~~~a~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 369 (767)
. ++-.+.-|+.+...+ -+-+...|..-+.. ..|+..+...++.++
T Consensus 296 E~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteA 373 (835)
T KOG2047|consen 296 ESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEA 373 (835)
T ss_pred HHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHH
Confidence 1 111112222222111 00112222221111 123344444444444
Q ss_pred HhCC-CC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 047305 370 WKRD-SL----PNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPS---VGMFNALIDGLCKAGELEKANLLFYKMEI 441 (767)
Q Consensus 370 ~~~~-~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 441 (767)
++.- +. .-...|..+...|-..|+.+.|..+|++..+-..+-- ..+|..-...-.+..+++.|+++.++...
T Consensus 374 v~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~ 453 (835)
T KOG2047|consen 374 VKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH 453 (835)
T ss_pred HHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc
Confidence 4321 00 1123345555555555555555555555544322111 12333333444444555555555544421
Q ss_pred CCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 047305 442 GKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKE 521 (767)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 521 (767)
-..+ +. ..+...+..-++ ....+...|...++.--..|-++....+++.
T Consensus 454 vP~~---------------~~------~~~yd~~~pvQ~----------rlhrSlkiWs~y~DleEs~gtfestk~vYdr 502 (835)
T KOG2047|consen 454 VPTN---------------PE------LEYYDNSEPVQA----------RLHRSLKIWSMYADLEESLGTFESTKAVYDR 502 (835)
T ss_pred CCCc---------------hh------hhhhcCCCcHHH----------HHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 1000 00 000000000000 0011334566666666667778888888888
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HhhHHHHHHHHHh---cCChhHHHHHHHHHHhccC
Q 047305 522 LQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPS-PAVYKSLMTWSCR---RRKFSLAFSLWLQYLRDIS 597 (767)
Q Consensus 522 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~p 597 (767)
+++..+- ++......+..+-....++++.++|++-+..-..|+ ...|+..+.-+.+ ..+++.|..+|+++++..|
T Consensus 503 iidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 503 IIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP 581 (835)
T ss_pred HHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 8876554 343344444455566667788888877766422333 2344444444332 2477888888888888777
Q ss_pred CCccchHHH--HHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhc----CCHHHHHHHHHHHHHcCCCCC--
Q 047305 598 GRDDESMKS--IEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQD----GQVKEALNIFSVLVECKAIVT-- 669 (767)
Q Consensus 598 ~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~-- 669 (767)
+...-...+ +..-.+.|-...|++++.+......+.+ ...|-++|.+. =-...-.++|+++++. +|.+
T Consensus 582 p~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~---~l~myni~I~kaae~yGv~~TR~iYekaIe~-Lp~~~~ 657 (835)
T KOG2047|consen 582 PEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQ---RLDMYNIYIKKAAEIYGVPRTREIYEKAIES-LPDSKA 657 (835)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHHHHHHhCCcccHHHHHHHHHh-CChHHH
Confidence 544333322 3333456777788888887654433332 23333333322 1233445677777765 2333
Q ss_pred hHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhhcCCccHHHHHHHHH
Q 047305 670 PPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILR--PRVCNYLLRSLLFSKDNKKVHAYHLLC 731 (767)
Q Consensus 670 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~a~~~~~ 731 (767)
......+++.-.+.|..+.|+.+|....+- ..|. ...|...-.+=. +.|+ -+-..+|++
T Consensus 658 r~mclrFAdlEtklGEidRARaIya~~sq~-~dPr~~~~fW~twk~FEv-rHGn-edT~keMLR 718 (835)
T KOG2047|consen 658 REMCLRFADLETKLGEIDRARAIYAHGSQI-CDPRVTTEFWDTWKEFEV-RHGN-EDTYKEMLR 718 (835)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-CCCcCChHHHHHHHHHHH-hcCC-HHHHHHHHH
Confidence 223455677777889999999988876542 2222 334555444444 6776 455555543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-13 Score=141.16 Aligned_cols=284 Identities=12% Similarity=0.016 Sum_probs=178.4
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchH--HHHHHH
Q 047305 391 NGMVDDAQKLFNKMEKAGCFPSVGMFNAL-IDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDK--ASLQTM 467 (767)
Q Consensus 391 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l 467 (767)
.|+++.|++.+....+.. +++..+..+ ..+..+.|+++.|...+.++.. ..++. ......
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~---------------~~~~~~~~~~l~~ 159 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAE---------------LADNDQLPVEITR 159 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---------------cCCcchHHHHHHH
Confidence 466666666555544431 122222222 3333566666666666666531 11111 111122
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-------hhHHHHHHH
Q 047305 468 VEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDS-------VTYGTLING 540 (767)
Q Consensus 468 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~l~~~ 540 (767)
...+...|+++.|...++++.+..+ .+......+...|.+.|++++|.+++..+.+.+..++. .+|..++..
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P-~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~ 238 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAP-RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQ 238 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 5556666777777777776666642 25566667777777788888888888887776543222 122223333
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHH
Q 047305 541 LQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAI 620 (767)
Q Consensus 541 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 620 (767)
.....+.+...++++.+.+. .+.++.....++..+...|+.++|...+++.++. |.++... ........++.++++
T Consensus 239 ~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~--~l~~~l~~~~~~~al 314 (398)
T PRK10747 239 AMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLV--LLIPRLKTNNPEQLE 314 (398)
T ss_pred HHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHH--HHHhhccCCChHHHH
Confidence 33344455556666665442 3456777777888888888888888888888874 3344222 233333458888887
Q ss_pred HHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047305 621 QGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 621 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 699 (767)
+.+++... ..|+++..+..++.++.+.|++++|.+.|+++.+. .|+...+..++.++.+.|+.++|..+|++.+..
T Consensus 315 ~~~e~~lk-~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 315 KVLRQQIK-QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHh-hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77777442 35888888888888888888888888888888876 466777778888888888888888888887653
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-16 Score=154.48 Aligned_cols=258 Identities=16% Similarity=0.112 Sum_probs=111.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 047305 466 TMVEQYCTAGLIHKAYKILMQLAESG-NLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRV 544 (767)
Q Consensus 466 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 544 (767)
.+...+...|++++|+++++...... ...+...|..+.......++++.|+..++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 55788889999999999997655543 2335556666667777899999999999999987533 45567777766 688
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcc--CCCccchHHHHHHHHhcCCHHHHHHH
Q 047305 545 DREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDI--SGRDDESMKSIEEFLQKGEVENAIQG 622 (767)
Q Consensus 545 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~ 622 (767)
+++++|..++....+. .+++..+..++..+.+.++++++.++++++.+.. +.++..+..++..+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999887664 3566777788888999999999999999977544 66777788899999999999999999
Q ss_pred HHH-hhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 047305 623 LLE-MDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGF 701 (767)
Q Consensus 623 ~~~-~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 701 (767)
+.+ +. ..|+++.+...+++.+...|+.+++.++++...+.. +.++..+..++.+|...|+.++|...|+++.+..
T Consensus 169 ~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 169 YRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred HHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence 998 44 359999999999999999999999999999998876 8888899999999999999999999999998854
Q ss_pred CCCHHHHHH-HHHHHhhcCCccHHHHHHHHHHHH
Q 047305 702 ILRPRVCNY-LLRSLLFSKDNKKVHAYHLLCRMK 734 (767)
Q Consensus 702 ~~~~~~~~~-l~~~l~~~~~~~~~~a~~~~~~~~ 734 (767)
|+++.+.. +...+. ..|+ .++|..+.++..
T Consensus 245 -p~d~~~~~~~a~~l~-~~g~-~~~A~~~~~~~~ 275 (280)
T PF13429_consen 245 -PDDPLWLLAYADALE-QAGR-KDEALRLRRQAL 275 (280)
T ss_dssp -TT-HHHHHHHHHHHT------------------
T ss_pred -ccccccccccccccc-cccc-cccccccccccc
Confidence 76555444 555554 8888 999999988764
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.2e-12 Score=125.93 Aligned_cols=280 Identities=13% Similarity=0.053 Sum_probs=224.3
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHH
Q 047305 459 HDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRP-DSVTYGTL 537 (767)
Q Consensus 459 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l 537 (767)
.+........+-+...+++.+..++++...+.. ++....+..-|.++...|+..+-..+-.++.+. .| ...+|..+
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~--yP~~a~sW~aV 318 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL--YPSKALSWFAV 318 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCCcchhhH
Confidence 456677777888889999999999999998774 345556666677888999988888888888876 34 45689999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHH
Q 047305 538 INGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVE 617 (767)
Q Consensus 538 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 617 (767)
.-.|...|+..+|+++|.+....+ +.=...|..++..|.-.|+.|+|...|..+-+.+|........++.-|.+.++.+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHH
Confidence 988988999999999999997643 2336688889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCC---CC---ChHhHHHHHHHHHhcCChhHHHH
Q 047305 618 NAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKA---IV---TPPSCVKLIHGLCKRGYLDLAMD 691 (767)
Q Consensus 618 ~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~---~~~~~~~l~~~~~~~g~~~~A~~ 691 (767)
.|.+.+.. ...+.|.+|..++-+|-+.+..+.|.+|..+|++++..-. +. -..+++.||.+|.+.+++++|+.
T Consensus 398 LAe~Ff~~-A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 398 LAEKFFKQ-ALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHH-HHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 99666655 2346799999999999999999999999999999873210 11 23458899999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCCCCCcchhhh
Q 047305 692 VFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCRMKSVGYDLDACLYPKT 748 (767)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 748 (767)
.+++++... |.+...+.-++..+.-.|+ ++.|.+.+.+.. ++.||..+...+
T Consensus 477 ~~q~aL~l~--~k~~~~~asig~iy~llgn-ld~Aid~fhKaL--~l~p~n~~~~~l 528 (611)
T KOG1173|consen 477 YYQKALLLS--PKDASTHASIGYIYHLLGN-LDKAIDHFHKAL--ALKPDNIFISEL 528 (611)
T ss_pred HHHHHHHcC--CCchhHHHHHHHHHHHhcC-hHHHHHHHHHHH--hcCCccHHHHHH
Confidence 999999854 5554444433333325676 899999888866 456776554444
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-13 Score=140.98 Aligned_cols=283 Identities=13% Similarity=0.018 Sum_probs=216.2
Q ss_pred cCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHH--HH
Q 047305 426 AGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKAS-LQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYN--SL 502 (767)
Q Consensus 426 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~l 502 (767)
.|+++.|.+.+..... ....+.. +..........|+++.|...+.++.+. .|+..... ..
T Consensus 97 eGd~~~A~k~l~~~~~---------------~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~ 159 (398)
T PRK10747 97 EGDYQQVEKLMTRNAD---------------HAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITR 159 (398)
T ss_pred CCCHHHHHHHHHHHHh---------------cccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHH
Confidence 6999999988876531 1112233 333455558999999999999999876 34433222 33
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHh-------hHHHHHHH
Q 047305 503 INGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPA-------VYKSLMTW 575 (767)
Q Consensus 503 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~ 575 (767)
...+...|+++.|...++.+.+.... +......+...|.+.|++++|..++..+.+.+..++.. +|..++..
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~ 238 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQ 238 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 66788999999999999999987533 55678888999999999999999999999875443221 22333333
Q ss_pred HHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHH
Q 047305 576 SCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEAL 655 (767)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 655 (767)
.....+.+...++++...+..|.++.+...++..+...|+.++|.+.+.+.... |.++. ..+..+....++.++++
T Consensus 239 ~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al 314 (398)
T PRK10747 239 AMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQLE 314 (398)
T ss_pred HHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHHH
Confidence 334455667777777777777889999999999999999999999999885332 44443 22334444569999999
Q ss_pred HHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHH
Q 047305 656 NIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCRMKS 735 (767)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~ 735 (767)
+..++..+.. |.|+..+..++..+.+.|++++|+++|+++++. .|++..+..+...+- ..|+ .++|..++++-..
T Consensus 315 ~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~-~~g~-~~~A~~~~~~~l~ 389 (398)
T PRK10747 315 KVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALD-RLHK-PEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHH-HcCC-HHHHHHHHHHHHh
Confidence 9999999987 889999999999999999999999999999875 499887676666665 8888 9999999998654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.8e-11 Score=121.83 Aligned_cols=512 Identities=12% Similarity=0.006 Sum_probs=237.8
Q ss_pred cCChhHHHHHHHHhhhCCCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 047305 111 VGDCEKALESFGKMKEFDCQPDVYIYNAVLNI---AFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVA 187 (767)
Q Consensus 111 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 187 (767)
.+..++++.-+......++..+..++..+... +...++.+++ ++-..+.....|...++.+.+..
T Consensus 240 ~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilsl---------- 307 (799)
T KOG4162|consen 240 LSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSL---------- 307 (799)
T ss_pred CCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHH----------
Confidence 45566677777666666666666665554433 2233444444 22222221112221111111111
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 047305 188 IKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKD 267 (767)
Q Consensus 188 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 267 (767)
...+.++....+..+...|..+.-++.+.|+++.+.+.|++....-+ -....|..+...|...|.-..|..+++.....
T Consensus 308 m~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~ 386 (799)
T KOG4162|consen 308 MLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKK 386 (799)
T ss_pred HHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhccc
Confidence 01222233333344566666666666677777777777777654322 24455666666666677766777777665543
Q ss_pred CCCCCc-ccHHHHHHHHH-hcCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHhc-----------CCHHHHHHH
Q 047305 268 GFVPRL-GSYSCLIDGLF-RAKRYDEAYAWYRKMFEE--KI--EPDVVLYGVMIRGLSEA-----------GKVKDAMKL 330 (767)
Q Consensus 268 ~~~~~~-~~~~~li~~~~-~~~~~~~A~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------g~~~~a~~~ 330 (767)
...|+. ..+...-..|. +.+.+++++.+-.++... +. ......|..+.-+|... ....++++.
T Consensus 387 ~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqa 466 (799)
T KOG4162|consen 387 SEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQA 466 (799)
T ss_pred ccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHH
Confidence 322332 22222222222 334555555555554441 10 11222333333333211 113456666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 047305 331 LSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCF 410 (767)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 410 (767)
+++..+.+.. |+.....+.--|+..++++.|.+..++.++.+...+...|..|+..+...+++.+|+.+.+.....-.
T Consensus 467 le~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~- 544 (799)
T KOG4162|consen 467 LEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG- 544 (799)
T ss_pred HHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh-
Confidence 6666655433 33333333344555667777777777777665556666777777667777777777777666544310
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHH--
Q 047305 411 PSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLA-- 488 (767)
Q Consensus 411 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-- 488 (767)
-|-.....-++.-...++.++++.....+.. .|... -.....++-....+....+.
T Consensus 545 ~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~-----~we~~-----------------~~~q~~~~~g~~~~lk~~l~la 602 (799)
T KOG4162|consen 545 DNHVLMDGKIHIELTFNDREEALDTCIHKLA-----LWEAE-----------------YGVQQTLDEGKLLRLKAGLHLA 602 (799)
T ss_pred hhhhhchhhhhhhhhcccHHHHHHHHHHHHH-----HHHhh-----------------hhHhhhhhhhhhhhhhcccccC
Confidence 0111111112222335566666655544420 00000 00000011011111111110
Q ss_pred HcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh--------hhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 047305 489 ESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDS--------VTYGTLINGLQRVDREEDAFRIFGQMPQN 560 (767)
Q Consensus 489 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 560 (767)
.........++..+..-....+ ..+..-.. +...-+.|.. ..|......+.+.++.++|...+.++...
T Consensus 603 ~~q~~~a~s~sr~ls~l~a~~~--~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~ 679 (799)
T KOG4162|consen 603 LSQPTDAISTSRYLSSLVASQL--KSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI 679 (799)
T ss_pred cccccccchhhHHHHHHHHhhh--hhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Confidence 0000101112222111111000 00000000 1111111221 12344445556666666666666666543
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHH--HHHHhhhcCCCCCccch
Q 047305 561 GCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQ--GLLEMDFKLNDFQLAPY 638 (767)
Q Consensus 561 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~p~~~~~~ 638 (767)
.+.....|...+..+...|++++|.+.|..++..+|+.+.+...++.++.+.|+..-|.. .+... .+.+|.++.+|
T Consensus 680 -~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~da-lr~dp~n~eaW 757 (799)
T KOG4162|consen 680 -DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDA-LRLDPLNHEAW 757 (799)
T ss_pred -chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHH-HhhCCCCHHHH
Confidence 233455555555666666677777777766666666666666666666666665554433 33332 12346666666
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHc
Q 047305 639 TIWLIGLCQDGQVKEALNIFSVLVEC 664 (767)
Q Consensus 639 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 664 (767)
..+|.++.+.|+.++|.+.|+.+...
T Consensus 758 ~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 758 YYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhh
Confidence 66666666666666666666666544
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4e-11 Score=121.68 Aligned_cols=512 Identities=13% Similarity=0.019 Sum_probs=311.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHH
Q 047305 146 KQLFLLALAVYYEMVKLNCLPNIVTFSLLING---LSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEA 222 (767)
Q Consensus 146 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 222 (767)
.++.+.+..-+......+.+.+..++..+-.. |...++.+++ .|-......+.|....+.+++.-
T Consensus 240 ~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilsl---------- 307 (799)
T KOG4162|consen 240 LSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSL---------- 307 (799)
T ss_pred CCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHH----------
Confidence 34556666666666666655555555544433 2333455544 22222222222322222222111
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047305 223 YRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEE 302 (767)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~ 302 (767)
.-.+.++....+.-|...|..+.-+....|+++.+.+.|++....-+ .....|..+...|...|.-..|..+++.-...
T Consensus 308 m~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~ 386 (799)
T KOG4162|consen 308 MLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKK 386 (799)
T ss_pred HHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhccc
Confidence 01122333333456778888888888889999999999998875432 25567888888888899988999998887766
Q ss_pred CCCCCHHHHHHH-HHHHHh-cCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHHhc-----------CCHHHHHHH
Q 047305 303 KIEPDVVLYGVM-IRGLSE-AGKVKDAMKLLSDMRER--GI--VPDTYCYNALIKGFCDL-----------GLLDQARSL 365 (767)
Q Consensus 303 ~~~~~~~~~~~l-~~~~~~-~g~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------~~~~~a~~~ 365 (767)
...|+..+--.+ -..|.+ -+.+++++++-.+.... +. ......|..+.-+|... ....++.+.
T Consensus 387 ~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqa 466 (799)
T KOG4162|consen 387 SEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQA 466 (799)
T ss_pred ccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHH
Confidence 544544433333 334433 46777777777776652 11 11234444444444321 123456667
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCc
Q 047305 366 QVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNP 445 (767)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 445 (767)
+++.++.++. |+.+.-.+.--|+..++.+.|....++..+.+..-+...|..+.-.+...+++.+|+.+.+.....
T Consensus 467 le~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E--- 542 (799)
T KOG4162|consen 467 LEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE--- 542 (799)
T ss_pred HHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH---
Confidence 7777776653 333333445567778888889888888888755567888888888888888888888888766411
Q ss_pred hhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047305 446 TLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLK 525 (767)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 525 (767)
.+.|......-+..-..-|+.++++.....+... |...- .....++-....++...+.-.
T Consensus 543 -----------~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~--------we~~~-~~q~~~~~g~~~~lk~~l~la 602 (799)
T KOG4162|consen 543 -----------FGDNHVLMDGKIHIELTFNDREEALDTCIHKLAL--------WEAEY-GVQQTLDEGKLLRLKAGLHLA 602 (799)
T ss_pred -----------hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHH--------HHhhh-hHhhhhhhhhhhhhhcccccC
Confidence 1112222222233333356666666665555432 11000 000111111222222222111
Q ss_pred CCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC--CCC------HhhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047305 526 GLRP--DSVTYGTLINGLQRVDREEDAFRIFGQMPQNGC--TPS------PAVYKSLMTWSCRRRKFSLAFSLWLQYLRD 595 (767)
Q Consensus 526 ~~~p--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 595 (767)
--.| ...++..+.. ... .+.+.+..-.. +..... .|+ ...|......+.+.+..++|...+.++-+.
T Consensus 603 ~~q~~~a~s~sr~ls~-l~a-~~~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~ 679 (799)
T KOG4162|consen 603 LSQPTDAISTSRYLSS-LVA-SQLKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI 679 (799)
T ss_pred cccccccchhhHHHHH-HHH-hhhhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc
Confidence 0011 1122222221 111 11111110000 211111 122 234455666788899999999999999999
Q ss_pred cCCCccchHHHHHHHHhcCCHHHHHHHHHH-hhhcCCCCCccchHHHHHHHhhcCCHHHHHH--HHHHHHHcCCCCChHh
Q 047305 596 ISGRDDESMKSIEEFLQKGEVENAIQGLLE-MDFKLNDFQLAPYTIWLIGLCQDGQVKEALN--IFSVLVECKAIVTPPS 672 (767)
Q Consensus 596 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~ 672 (767)
.|..+..++..+..+...|+.++|.+.|.. +. .+|+++.+...++.++.+.|+-.-|.. ++..+++.+ |.++.+
T Consensus 680 ~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~ea 756 (799)
T KOG4162|consen 680 DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEA 756 (799)
T ss_pred chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHH
Confidence 999999999999999999999999888887 44 569999999999999999998777777 999999998 899999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047305 673 CVKLIHGLCKRGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 673 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 700 (767)
|..+|.++-+.|+.++|.+.|+.+++..
T Consensus 757 W~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 757 WYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 9999999999999999999999998743
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.7e-11 Score=124.31 Aligned_cols=243 Identities=16% Similarity=0.112 Sum_probs=154.1
Q ss_pred CCChhhHHHHHHHHhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHH
Q 047305 60 LRSFASNSAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAV 139 (767)
Q Consensus 60 ~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 139 (767)
.++..+|..++..|+..|+.+.|- +|.-|.-...+.+..+|+.++.+....++.+.+. .|.+.+|..|
T Consensus 22 ~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~L 89 (1088)
T KOG4318|consen 22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNL 89 (1088)
T ss_pred CCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHHHH
Confidence 456689999999999999999988 9999988888888899999999988888877665 5888899999
Q ss_pred HHHHHHcCCHHH---HHHHHHHHH----HCCCC-CCHHHH-------------HHHHHHHHhcCChHHHHHHHHHHHHCC
Q 047305 140 LNIAFRKQLFLL---ALAVYYEMV----KLNCL-PNIVTF-------------SLLINGLSKSGKTEVAIKMLDEMTQRG 198 (767)
Q Consensus 140 l~~~~~~g~~~~---A~~~~~~~~----~~~~~-~~~~~~-------------~~l~~~~~~~g~~~~A~~~~~~~~~~~ 198 (767)
+.+|...||... +.+.++.+. ..|+- |....+ ...+....-.|-++.+++++..+....
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa 169 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSA 169 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 999999998654 222122221 12221 111111 111111122233333444333332211
Q ss_pred CCCChhhHHHHHHHHHccC-CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHH
Q 047305 199 ILPNKFTYTIVISGLCQIN-RADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYS 277 (767)
Q Consensus 199 ~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 277 (767)
.. .+... +++-+.... .+++-......... .|++.+|..++.+-...|+.+.|..++.+|.+.|++.+.+-|-
T Consensus 170 ~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFw 243 (1088)
T KOG4318|consen 170 WN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFW 243 (1088)
T ss_pred cc-chHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccch
Confidence 11 01111 132222222 22222222222222 4788888888888888888888888888888888888877777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 047305 278 CLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGK 323 (767)
Q Consensus 278 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 323 (767)
.|+-+ .++..-+..+++-|.+.|+.|+..|+...+..+.++|.
T Consensus 244 pLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 244 PLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 66655 67777778888888888888888887766666655443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.1e-11 Score=107.72 Aligned_cols=509 Identities=13% Similarity=0.059 Sum_probs=291.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhH
Q 047305 142 IAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADE 221 (767)
Q Consensus 142 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 221 (767)
-+....++..|+.+++--...+-.....+-..+...+.+.|++++|+..+.-+.+.. .|+...+..+.-++.-.|.+.+
T Consensus 31 dfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHH
Confidence 344567777777777665544422233344445566778889999988888877743 4566666667767777788888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047305 222 AYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFE 301 (767)
Q Consensus 222 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~ 301 (767)
|..+-....+ +.-....|.....+.++-++-..+.+.+... ..--.+|.......-.+.+|+++|..++.
T Consensus 110 A~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 110 AKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8777655432 3344455556666778877777776666542 23445566666666778899999998887
Q ss_pred CCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 047305 302 EKIEPDVVLYGVMI-RGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHT 380 (767)
Q Consensus 302 ~~~~~~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 380 (767)
. .|.-...|.-+ -.|.+..-++-+.++++-..+. ++-++...+..+....+.-.-..|..-...+...+...
T Consensus 180 d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~---- 252 (557)
T KOG3785|consen 180 D--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE---- 252 (557)
T ss_pred c--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----
Confidence 6 34444555444 3456666677777777777665 22234444444443333333333333334443332211
Q ss_pred HHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCC
Q 047305 381 FTILICGMCR-----NGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGG 455 (767)
Q Consensus 381 ~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 455 (767)
| ..+.-.++ ..+-+.|++++-.+.+. .| .+-..++--|.+.++..+|..+.+++... .|..
T Consensus 253 ~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~Pt-tP~E-------- 318 (557)
T KOG3785|consen 253 Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDPT-TPYE-------- 318 (557)
T ss_pred c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCCC-ChHH--------
Confidence 1 12222233 24557788887777653 23 33345666788889999999888887310 0000
Q ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 047305 456 NRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDI-ITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTY 534 (767)
Q Consensus 456 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 534 (767)
......+...+.+-.........|.+.|+-.-.++..-|. ..-.++..++.-..++++++..++.+...-.. |...-
T Consensus 319 -yilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn 396 (557)
T KOG3785|consen 319 -YILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFN 396 (557)
T ss_pred -HHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhh
Confidence 0001112222222222333455667777666555443332 23345666666677888888888888765333 33333
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcC
Q 047305 535 GTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKG 614 (767)
Q Consensus 535 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 614 (767)
..++.+++..|++.+|.++|-++....++........+.++|.++++++-|-+++-+. ..|
T Consensus 397 ~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~----------------- 457 (557)
T KOG3785|consen 397 LNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT--NTP----------------- 457 (557)
T ss_pred hHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCc-----------------
Confidence 3567888888999999998887765444444434445667778888877776654222 111
Q ss_pred CHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHH
Q 047305 615 EVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFL 694 (767)
Q Consensus 615 ~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 694 (767)
.+....+-.+++.|++.+.+=-|.+.|+.+...+ |+|..| .|+-.....+|.
T Consensus 458 -----------------~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD--P~pEnW---------eGKRGACaG~f~ 509 (557)
T KOG3785|consen 458 -----------------SERFSLLQLIANDCYKANEFYYAAKAFDELEILD--PTPENW---------EGKRGACAGLFR 509 (557)
T ss_pred -----------------hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC--CCcccc---------CCccchHHHHHH
Confidence 1112224455666777777777777777776654 555443 455455556666
Q ss_pred HHHHCCCCCCHHH-HHHHHHHHhhcCCccHHHHHHHHHHHH
Q 047305 695 YTLKNGFILRPRV-CNYLLRSLLFSKDNKKVHAYHLLCRMK 734 (767)
Q Consensus 695 ~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~a~~~~~~~~ 734 (767)
......-.|-+.. ....+..+. ..++ .++.-+++-++
T Consensus 510 ~l~~~~~~~~p~~~~rEVvhllr-~~~n--sq~E~mikvvr 547 (557)
T KOG3785|consen 510 QLANHKTDPIPISQMREVVHLLR-MKPN--SQCEFMIKVVR 547 (557)
T ss_pred HHHcCCCCCCchhHHHHHHHHHH-hCCC--chHHHHHHHHH
Confidence 6554332222221 222333333 4443 55666666555
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.2e-12 Score=116.88 Aligned_cols=287 Identities=19% Similarity=0.147 Sum_probs=229.4
Q ss_pred cCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------hhH
Q 047305 426 AGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDI------ITY 499 (767)
Q Consensus 426 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~ 499 (767)
+++.++|.+.|-+|. ...+.+.++-.++...|...|..+.|+++.+.+.++ ||. ...
T Consensus 48 s~Q~dKAvdlF~e~l--------------~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl 110 (389)
T COG2956 48 SNQPDKAVDLFLEML--------------QEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLAL 110 (389)
T ss_pred hcCcchHHHHHHHHH--------------hcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHH
Confidence 578899999999996 334456667788999999999999999999998865 342 334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC----HhhHHHHHHH
Q 047305 500 NSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPS----PAVYKSLMTW 575 (767)
Q Consensus 500 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~ 575 (767)
..|..-|...|-++.|..+|..+.+.+. .-......|+..|-...++++|++.-+++.+.+..+. ...|..+...
T Consensus 111 ~qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~ 189 (389)
T COG2956 111 QQLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQ 189 (389)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHH
Confidence 5677889999999999999999988652 3556788999999999999999999999988654443 3456667777
Q ss_pred HHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC-CccchHHHHHHHhhcCCHHHH
Q 047305 576 SCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDF-QLAPYTIWLIGLCQDGQVKEA 654 (767)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A 654 (767)
+....+.+.|...+.++++.+|....+...++.++...|+++.|++.+..+... +|+ -+.+...|..+|.+.|+.++.
T Consensus 190 ~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~ 268 (389)
T COG2956 190 ALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEG 268 (389)
T ss_pred HhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 777889999999999999999999999999999999999999999999996544 343 345677888899999999999
Q ss_pred HHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh--cCCccHHHHHHHHHH
Q 047305 655 LNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLF--SKDNKKVHAYHLLCR 732 (767)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~~~a~~~~~~ 732 (767)
+..+.++.+.. +.+.....+.+.-....-.+.|..++.+-+++ +|+-..++-++..-+. +.|. .++-..++++
T Consensus 269 ~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~-~k~sL~~lr~ 343 (389)
T COG2956 269 LNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGR-AKESLDLLRD 343 (389)
T ss_pred HHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccc-hhhhHHHHHH
Confidence 99999998875 45556666777666655578888888777764 4888877777777653 3334 6677778888
Q ss_pred HHHc
Q 047305 733 MKSV 736 (767)
Q Consensus 733 ~~~~ 736 (767)
|...
T Consensus 344 mvge 347 (389)
T COG2956 344 MVGE 347 (389)
T ss_pred HHHH
Confidence 7743
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.4e-09 Score=106.44 Aligned_cols=545 Identities=10% Similarity=0.096 Sum_probs=285.9
Q ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHhC-CCCcCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 047305 65 SNSAVISMLLKPNGFDLYWQTLDELRSG-NVSVVSDVFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIA 143 (767)
Q Consensus 65 ~~~~l~~~l~~~~~~~~a~~~l~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 143 (767)
.|...+..+.+++++..-...|+..+.. .+.....+|...+.-....+-++-++.+|++-.+ .++..-+--+..+
T Consensus 104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~eeyie~L 179 (835)
T KOG2047|consen 104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREEYIEYL 179 (835)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHHHHHH
Confidence 3444445555666666666666655433 2233445566666666666667777777776663 3333355556666
Q ss_pred HHcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCChHH---HHHHHHHHHHCCCCCC--hhhHHHHHHH
Q 047305 144 FRKQLFLLALAVYYEMVKLN------CLPNIVTFSLLINGLSKSGKTEV---AIKMLDEMTQRGILPN--KFTYTIVISG 212 (767)
Q Consensus 144 ~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p~--~~~~~~li~~ 212 (767)
++.+++++|.+.+...+... .+.+-..|.-+-....+..+.-. ...++..+... -+| -..|++|.+-
T Consensus 180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADY 257 (835)
T ss_pred HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHH
Confidence 67777777777766665331 12333444444444443322211 22233333222 122 2346667777
Q ss_pred HHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCcccHHHHHHHHHhcCCHHH
Q 047305 213 LCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFE-KDGFVPRLGSYSCLIDGLFRAKRYDE 291 (767)
Q Consensus 213 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~ 291 (767)
|.+.|.++.|.++|++.... .....-|+.+.+.|+.-....-+..+= ... +.+-.-+. -+++-
T Consensus 258 YIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~-------------~dl~~ 321 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDD-------------VDLEL 321 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhh-------------hhHHH
Confidence 77777777777777666553 223444555555555422211111110 000 01100011 11222
Q ss_pred HHHHHHHHHHCC-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHH
Q 047305 292 AYAWYRKMFEEK-----------IEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVP------DTYCYNALIKGFC 354 (767)
Q Consensus 292 A~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~ 354 (767)
....|+.+.... -..++..|..-+. +..|+..+-...+.+.... +.| -...|..+.+.|-
T Consensus 322 ~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe 398 (835)
T KOG2047|consen 322 HMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYE 398 (835)
T ss_pred HHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHH
Confidence 333333333321 1124444544333 4467788888888888765 222 2356888899999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------------CHH
Q 047305 355 DLGLLDQARSLQVEIWKRDSLPN---THTFTILICGMCRNGMVDDAQKLFNKMEKAGCFP-----------------SVG 414 (767)
Q Consensus 355 ~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----------------~~~ 414 (767)
..|+++.|+.+|+...+.....- ..+|.....+-.+..+++.|+++++......-.| +..
T Consensus 399 ~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlk 478 (835)
T KOG2047|consen 399 NNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLK 478 (835)
T ss_pred hcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHH
Confidence 99999999999999887654221 3556666667777888999999888765431110 223
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 047305 415 MFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLP 494 (767)
Q Consensus 415 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 494 (767)
.|...++..-..|-++....+++++. .-...++....+.+..+-...-++++.+++++-...-..|
T Consensus 479 iWs~y~DleEs~gtfestk~vYdrii--------------dLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p 544 (835)
T KOG2047|consen 479 IWSMYADLEESLGTFESTKAVYDRII--------------DLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWP 544 (835)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH--------------HHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCc
Confidence 34444444444555555555665553 1112333444444444445556677777776655554445
Q ss_pred CH-hhHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCChhhHHHHH--HHHHhcCCHHHHHHHHHHhhhCCCCCC--H
Q 047305 495 DI-ITYNSLINGFCK---VGNINGALKLFKELQLKGLRPDSVTYGTLI--NGLQRVDREEDAFRIFGQMPQNGCTPS--P 566 (767)
Q Consensus 495 ~~-~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~--~~~~~~~~~~~A~~~~~~~~~~~~~~~--~ 566 (767)
++ ..|+..+.-+.+ ....+.|..+|++..+ |.+|...-+..|+ ..--+-|....|+.+++++... +++. .
T Consensus 545 ~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l 622 (835)
T KOG2047|consen 545 NVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRL 622 (835)
T ss_pred cHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHH
Confidence 54 345555544432 1246777777777776 3344433222222 2223446667777777776532 2322 2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchH--HHHHHHHhcCCHHHHHHHHHHhhhcCCCC-CccchHHHHH
Q 047305 567 AVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESM--KSIEEFLQKGEVENAIQGLLEMDFKLNDF-QLAPYTIWLI 643 (767)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~p~-~~~~~~~l~~ 643 (767)
..|+..+.-....=-.....++|+++++..|+...... ..+..-...|..+.|..++.--..-.+|. +...|...-.
T Consensus 623 ~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~ 702 (835)
T KOG2047|consen 623 DMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKE 702 (835)
T ss_pred HHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHH
Confidence 23333332222211234456677777777666554333 34555566777777766655532222343 3345666666
Q ss_pred HHhhcCC
Q 047305 644 GLCQDGQ 650 (767)
Q Consensus 644 ~~~~~g~ 650 (767)
.-.+.|+
T Consensus 703 FEvrHGn 709 (835)
T KOG2047|consen 703 FEVRHGN 709 (835)
T ss_pred HHHhcCC
Confidence 6666666
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.6e-13 Score=142.64 Aligned_cols=253 Identities=12% Similarity=-0.016 Sum_probs=191.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 047305 475 GLIHKAYKILMQLAESGNLPDIITYNSLINGFCK---------VGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVD 545 (767)
Q Consensus 475 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 545 (767)
++.++|...|++..+..+. +...|..+..++.. .+++++|...++++.+.+.. +...+..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcc
Confidence 3467899999999887432 45566666655442 24478999999999987433 5667888888889999
Q ss_pred CHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHH
Q 047305 546 REEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLE 625 (767)
Q Consensus 546 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 625 (767)
++++|...++++++.+ +.+...+..+..++...|++++|+..++++++.+|.++.....++..+...|++++|+..+.+
T Consensus 353 ~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 353 EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 9999999999999864 445677888888999999999999999999999999888777777778889999999999888
Q ss_pred hhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCC
Q 047305 626 MDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNG-FILR 704 (767)
Q Consensus 626 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~ 704 (767)
......|+++..+..++.+|...|++++|...++++.... +.+......++..|...| ++|...++++.+.. -.+.
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~ 508 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDN 508 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhc
Confidence 5444457778878999999999999999999999987664 556667777888888888 58888888776531 1222
Q ss_pred HHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC
Q 047305 705 PRVCNYLLRSLLFSKDNKKVHAYHLLCRMKSVGY 738 (767)
Q Consensus 705 ~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~~~~ 738 (767)
......++..+ .|+ .+ ...+++++.+.|+
T Consensus 509 ~~~~~~~~~~~---~g~-~~-~~~~~~~~~~~~~ 537 (553)
T PRK12370 509 NPGLLPLVLVA---HGE-AI-AEKMWNKFKNEDN 537 (553)
T ss_pred CchHHHHHHHH---Hhh-hH-HHHHHHHhhccch
Confidence 33333344443 355 34 4445588886653
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.2e-11 Score=122.30 Aligned_cols=130 Identities=11% Similarity=-0.046 Sum_probs=80.3
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcC--CCCChHhHHHHHHHHHhcC
Q 047305 607 IEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECK--AIVTPPSCVKLIHGLCKRG 684 (767)
Q Consensus 607 ~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g 684 (767)
...++..-+..+++..-.+.+....| ..|..|+..++..++.+.|+...++....+ ..-+..-+..+.+.+.+.+
T Consensus 466 ~l~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~ 542 (1088)
T KOG4318|consen 466 HLTLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLA 542 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhH
Confidence 33444444455554333333322222 447888888888888888888888875322 2234455677888888888
Q ss_pred ChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCCCC
Q 047305 685 YLDLAMDVFLYTLKNGFILR--PRVCNYLLRSLLFSKDNKKVHAYHLLCRMKSVGYDLD 741 (767)
Q Consensus 685 ~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~ 741 (767)
....+..+++++.+...+-+ ..+...++.... ..|+ -+...++.+-+.+.|+..+
T Consensus 543 ~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a-~agq-qe~Lkkl~d~lvslgl~et 599 (1088)
T KOG4318|consen 543 ILYDLSTILYEDKSSAENEPLVAIILFPLLNSGA-PAGQ-QEKLKKLADILVSLGLSET 599 (1088)
T ss_pred HHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhh-hccC-HHHHHHHHHHHHHhhhhhc
Confidence 88888888887765322222 223444555555 6666 6666777777777776654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2e-10 Score=107.81 Aligned_cols=295 Identities=12% Similarity=0.021 Sum_probs=203.1
Q ss_pred HhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHH
Q 047305 389 CRNGMVDDAQKLFNKMEKA-GCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTM 467 (767)
Q Consensus 389 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 467 (767)
+-.++...|...+-.+... -.+.|......+.+.+...|+.++|...|++.. ...+.+...+...
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~--------------~~dpy~i~~MD~Y 272 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTL--------------CANPDNVEAMDLY 272 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHh--------------hCChhhhhhHHHH
Confidence 3345555555554444332 233456667777778888888888888887764 2233444445555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 047305 468 VEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDRE 547 (767)
Q Consensus 468 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 547 (767)
.-.+...|++++-..+...+.... .-....|..-+......+++..|+.+-++.++.+.. +...+..-.+.+...++.
T Consensus 273 a~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~ 350 (564)
T KOG1174|consen 273 AVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERH 350 (564)
T ss_pred HHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccch
Confidence 556666777777777766665431 112334444445555677888888888888765322 444566666778888888
Q ss_pred HHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHH-HHHHh-cCCHHHHHHHHHH
Q 047305 548 EDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSI-EEFLQ-KGEVENAIQGLLE 625 (767)
Q Consensus 548 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~-~~~~~-~g~~~~A~~~~~~ 625 (767)
++|.-.|+.++... +-+...|..++.+|...|++.+|.-.-+...+.+|.+..++..++ .++.- ---.++| +.|.+
T Consensus 351 ~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKA-Kkf~e 428 (564)
T KOG1174|consen 351 TQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKA-KKFAE 428 (564)
T ss_pred HHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHH-HHHHH
Confidence 88888888887642 346778888888888889999988888888888888888777664 44433 2334566 44444
Q ss_pred hhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 047305 626 MDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRP 705 (767)
Q Consensus 626 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 705 (767)
...+..|....+.+.++..+...|++++++.++++.+.. -+|-...+.|++++...+.+.+|..+|..+++.+ |.+
T Consensus 429 k~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d--P~~ 504 (564)
T KOG1174|consen 429 KSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD--PKS 504 (564)
T ss_pred hhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--ccc
Confidence 334456888888888888888889999999999988764 4777788889999999999999999998887643 544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.4e-11 Score=114.10 Aligned_cols=292 Identities=14% Similarity=0.058 Sum_probs=195.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHH
Q 047305 391 NGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQ 470 (767)
Q Consensus 391 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 470 (767)
.|++.+|++...+..+.+..| ...|..-..+-.+.|+.+.+-.++.+..+ ....++..+.......
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae-------------~~~~~~l~v~ltrarl 162 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAE-------------LAGDDTLAVELTRARL 162 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhc-------------cCCCchHHHHHHHHHH
Confidence 567777777777766655332 23344444555666777777777666631 0012334455556666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-------hhHHHHHHHHHh
Q 047305 471 YCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDS-------VTYGTLINGLQR 543 (767)
Q Consensus 471 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~ 543 (767)
....|+++.|..-+.++.+.++. +.........+|.+.|++.....++..+.+.+.--++ .++..+++-...
T Consensus 163 ll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~ 241 (400)
T COG3071 163 LLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARD 241 (400)
T ss_pred HHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhc
Confidence 77777777777777777766533 5566677778888888888888888888877655443 245555555555
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHH
Q 047305 544 VDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGL 623 (767)
Q Consensus 544 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 623 (767)
.+..+.-...++..... .+.++..-.+++.-+.++|+.++|.++.++.++..-+.. ........+-++.+.-++.+
T Consensus 242 ~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~~~~l~~~d~~~l~k~~ 317 (400)
T COG3071 242 DNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRLIPRLRPGDPEPLIKAA 317 (400)
T ss_pred cccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHHHhhcCCCCchHHHHHH
Confidence 55445445555555432 344566666677778888888888888888886654443 11122233456666655555
Q ss_pred HHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 047305 624 LEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFIL 703 (767)
Q Consensus 624 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 703 (767)
++.. +..|+++..+..||..|.+.+.|.+|.+.|+.+++. .|+...|..+++++.+.|+..+|.+..++++..-..|
T Consensus 318 e~~l-~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 318 EKWL-KQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred HHHH-HhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 5522 235888888999999999999999999999988886 5888899999999999999999999999887654444
Q ss_pred C
Q 047305 704 R 704 (767)
Q Consensus 704 ~ 704 (767)
+
T Consensus 395 ~ 395 (400)
T COG3071 395 N 395 (400)
T ss_pred C
Confidence 4
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.1e-12 Score=123.82 Aligned_cols=198 Identities=13% Similarity=0.003 Sum_probs=118.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHH
Q 047305 532 VTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFL 611 (767)
Q Consensus 532 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 611 (767)
..+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|.+.++++++..|.++..+..++..+.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 110 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 344555555666666666666666665432 2334455555666666666666666666666666666666666666666
Q ss_pred hcCCHHHHHHHHHHh-hhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHH
Q 047305 612 QKGEVENAIQGLLEM-DFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAM 690 (767)
Q Consensus 612 ~~g~~~~A~~~~~~~-~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 690 (767)
..|++++|++.+.+. .....|.....+..++.++...|++++|...++++++.. +.++..+..++.++...|++++|.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHH
Confidence 666666666666663 211223344456666777777777777777777776665 555666667777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHHHH
Q 047305 691 DVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCRMK 734 (767)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~ 734 (767)
..++++++. .|+......+...+....|+ .++|..+.+.+.
T Consensus 190 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~ 230 (234)
T TIGR02521 190 AYLERYQQT--YNQTAESLWLGIRIARALGD-VAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHHhh-HHHHHHHHHHHH
Confidence 777776654 23333322333333335555 666666666554
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.1e-10 Score=111.00 Aligned_cols=434 Identities=15% Similarity=0.097 Sum_probs=248.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 047305 242 NALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEA 321 (767)
Q Consensus 242 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 321 (767)
..++..| ..+++...++..+.+++. .+-...+.....-.+...|+-++|....+......+. +.+.|..+.-.+...
T Consensus 12 ~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 12 RRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhh
Confidence 3344433 345666666666666552 2222334444444455567777777776666665444 556677766666667
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047305 322 GKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLF 401 (767)
Q Consensus 322 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 401 (767)
.++++|++.|+.....+.. |...+.-+.-.-...++++.........++..+ .....|..++.++.-.|+...|..++
T Consensus 89 K~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred hhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777765433 555555555555566677666666666665543 33455666666777777777777777
Q ss_pred HHHHHcC-CCCCHHHHHHHH------HHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhc
Q 047305 402 NKMEKAG-CFPSVGMFNALI------DGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTA 474 (767)
Q Consensus 402 ~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 474 (767)
+...+.. ..|+...+.... ......|..++|++.+...+ ............-...+.+.
T Consensus 167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e--------------~~i~Dkla~~e~ka~l~~kl 232 (700)
T KOG1156|consen 167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNE--------------KQIVDKLAFEETKADLLMKL 232 (700)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhh--------------hHHHHHHHHhhhHHHHHHHH
Confidence 7776543 235555443322 23456677788877776653 11222233344556677888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHH-HHHHhcCCHHHHH-HHHHHHHHCCCCCChhhHHHH-HHHHHhcCCHHHHH
Q 047305 475 GLIHKAYKILMQLAESGNLPDIITYNSLI-NGFCKVGNINGAL-KLFKELQLKGLRPDSVTYGTL-INGLQRVDREEDAF 551 (767)
Q Consensus 475 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~-~~~~~~~~~~~~p~~~~~~~l-~~~~~~~~~~~~A~ 551 (767)
+++++|..++..++.. .||...|.... .++.+..+.-+++ .+|....+. .|....-..+ +.......-.+...
T Consensus 233 ~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vd 308 (700)
T KOG1156|consen 233 GQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVD 308 (700)
T ss_pred hhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHH
Confidence 8899999999888876 45555554443 4443333334444 556555543 2222211111 11112222233345
Q ss_pred HHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcc------------CCCccch--HHHHHHHHhcCCHH
Q 047305 552 RIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDI------------SGRDDES--MKSIEEFLQKGEVE 617 (767)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------p~~~~~~--~~l~~~~~~~g~~~ 617 (767)
.++..+.+.|+++--....++..-=.+..=.++-..-|...+... |+.+.+| .-++..+...|+++
T Consensus 309 kyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~ 388 (700)
T KOG1156|consen 309 KYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYE 388 (700)
T ss_pred HHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHH
Confidence 566666666765544443333221101111111111111112111 2222222 23466677788888
Q ss_pred HHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047305 618 NAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTL 697 (767)
Q Consensus 618 ~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 697 (767)
.|...+.. .....|.-+..|..-++++.+.|++++|..+++++.+.+ .+|..+-..-+.-..+.++.++|.++..+.-
T Consensus 389 ~A~~yId~-AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFT 466 (700)
T KOG1156|consen 389 VALEYIDL-AIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFT 466 (700)
T ss_pred HHHHHHHH-HhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhh
Confidence 88555444 333457666777777888888888888888888888887 6666555567777788888888888888877
Q ss_pred HCC
Q 047305 698 KNG 700 (767)
Q Consensus 698 ~~~ 700 (767)
+.|
T Consensus 467 r~~ 469 (700)
T KOG1156|consen 467 REG 469 (700)
T ss_pred hcc
Confidence 655
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1e-09 Score=109.44 Aligned_cols=263 Identities=15% Similarity=0.056 Sum_probs=162.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047305 100 VFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLS 179 (767)
Q Consensus 100 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 179 (767)
.|...+.+| ..+++...+.+.+.+.+ +.+--..+.....-.+...|+-++|........+.. ..+.+.|..+.-.+.
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHh
Confidence 344455554 45788888888888776 444455566555556677788888888877777644 456667777777777
Q ss_pred hcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047305 180 KSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALA 259 (767)
Q Consensus 180 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 259 (767)
...++++|.+.|......+.. |...|.-+.-.-.+.|+++...+...+..+.. +.....|..++.++.-.|+...|..
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888776432 55666665555566777777777777776642 2234567777777777888888888
Q ss_pred HHHHHHhCC-CCCCcccHHHHHHH------HHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHH
Q 047305 260 LLRSFEKDG-FVPRLGSYSCLIDG------LFRAKRYDEAYAWYRKMFEEKIEPDVV-LYGVMIRGLSEAGKVKDAMKLL 331 (767)
Q Consensus 260 ~~~~~~~~~-~~~~~~~~~~li~~------~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~ 331 (767)
+++...+.. ..|+...+.-.... ....|..++|.+.+......- .|.. .-..-...+.+.+++++|..++
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i--~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI--VDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH--HHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 888877653 23455555443322 345666666766665544331 1222 2234455667778888888888
Q ss_pred HHHHHCCCCCCHHHHHH-HHHHHHhcCC-HHHHHHHHHHHHh
Q 047305 332 SDMRERGIVPDTYCYNA-LIKGFCDLGL-LDQARSLQVEIWK 371 (767)
Q Consensus 332 ~~~~~~~~~~~~~~~~~-l~~~~~~~~~-~~~a~~~~~~~~~ 371 (767)
..+.... ||...|.. +..++.+..+ .+....++....+
T Consensus 243 ~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 243 RRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSE 282 (700)
T ss_pred HHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 8887763 44444433 3344432222 2322244444443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.7e-11 Score=110.74 Aligned_cols=293 Identities=15% Similarity=0.059 Sum_probs=212.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047305 320 EAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQK 399 (767)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 399 (767)
..|++..|++.+.+-.+.+.. ....|..-.++....|+.+.+-.++.++.+....++....-.........|+...|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 357788888887776666544 3455555666666777777777777777766444566666666777777777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHH
Q 047305 400 LFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHK 479 (767)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 479 (767)
-..++.+.+.. ++.......++|.+.|+|.....++.++.
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~--------------------------------------- 214 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLR--------------------------------------- 214 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHH---------------------------------------
Confidence 77777776543 45566667777777777777777776664
Q ss_pred HHHHHHHHHHcCCCC-------CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 047305 480 AYKILMQLAESGNLP-------DIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFR 552 (767)
Q Consensus 480 A~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~ 552 (767)
+.+.-. ...+|..++.-....+..+.-...|+..... .+-++..-..++.-+.+.|+.++|.+
T Consensus 215 ---------ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~ 284 (400)
T COG3071 215 ---------KAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQE 284 (400)
T ss_pred ---------HccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHH
Confidence 222211 1245677776666666666666677777654 34456667778888999999999999
Q ss_pred HHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 047305 553 IFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLND 632 (767)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p 632 (767)
+..+..+.+..|+ ...++. +.+-++.+.-++..++.++..|++|..+..++..|.+++.+.+|.+.++. ..+..|
T Consensus 285 ~i~~~Lk~~~D~~---L~~~~~-~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~lea-Al~~~~ 359 (400)
T COG3071 285 IIEDALKRQWDPR---LCRLIP-RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEA-ALKLRP 359 (400)
T ss_pred HHHHHHHhccChh---HHHHHh-hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHH-HHhcCC
Confidence 9999998777666 222333 45778899999999999999999999999999999999999999777775 223335
Q ss_pred CCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC
Q 047305 633 FQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVT 669 (767)
Q Consensus 633 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 669 (767)
+... |..++.++.+.|+..+|.+.+++.+-.-.+|+
T Consensus 360 s~~~-~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 360 SASD-YAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred Chhh-HHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 5544 99999999999999999999999874433443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.3e-10 Score=106.36 Aligned_cols=277 Identities=11% Similarity=-0.057 Sum_probs=200.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhcc
Q 047305 374 SLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQ 453 (767)
Q Consensus 374 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 453 (767)
...|+.....+.+.+...|+..+|+..|++....++. +........-.+.+.|+++....+...+..
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~------------ 294 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFA------------ 294 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHh------------
Confidence 3356677777888888888888888888877664311 122222233345566777766665555531
Q ss_pred CCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 047305 454 GGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVT 533 (767)
Q Consensus 454 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 533 (767)
....+...|..-+......++++.|+.+-++.++... .+...+-.-...+...|++++|.-.|+..+...+ -+...
T Consensus 295 --~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~ 370 (564)
T KOG1174|consen 295 --KVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEI 370 (564)
T ss_pred --hhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHHH
Confidence 1112223333344455567788888888888877642 2555565556778899999999999999987632 25678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHH-HHHH-hcCChhHHHHHHHHHHhccCCCccchHHHHHHHH
Q 047305 534 YGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLM-TWSC-RRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFL 611 (767)
Q Consensus 534 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 611 (767)
|..|+..|...|++.+|...-....+. ++.+..+...+. .++. .----++|..++++.++..|....+.+.++..+.
T Consensus 371 Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~ 449 (564)
T KOG1174|consen 371 YRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQ 449 (564)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHH
Confidence 999999999999999998888777653 455666666553 3322 2234589999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHH-hhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHh
Q 047305 612 QKGEVENAIQGLLE-MDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPS 672 (767)
Q Consensus 612 ~~g~~~~A~~~~~~-~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 672 (767)
..|+.+.++..+++ +.. .|+.. ..+.|+.++...+.+++|.+.|..++..+ |.+..+
T Consensus 450 ~Eg~~~D~i~LLe~~L~~--~~D~~-LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d-P~~~~s 507 (564)
T KOG1174|consen 450 VEGPTKDIIKLLEKHLII--FPDVN-LHNHLGDIMRAQNEPQKAMEYYYKALRQD-PKSKRT 507 (564)
T ss_pred hhCccchHHHHHHHHHhh--ccccH-HHHHHHHHHHHhhhHHHHHHHHHHHHhcC-ccchHH
Confidence 99999999999998 432 35554 49999999999999999999999999987 555433
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.5e-09 Score=98.42 Aligned_cols=450 Identities=13% Similarity=0.108 Sum_probs=230.7
Q ss_pred HHHHhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCH
Q 047305 70 ISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLF 149 (767)
Q Consensus 70 ~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 149 (767)
+.-+....++..|..+++--...+-.-...+-.-+..++...|++++|+..|..+.... .++...+-.|..++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 44455567777777777766544422222333345566667777777777777666533 45555555555555566777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHH
Q 047305 150 LLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKM 229 (767)
Q Consensus 150 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 229 (767)
.+|..+-.+.. .+...-..|++...+.|+-++-..+.+.+.. ...--.++...-...-.+++|+++|.+.
T Consensus 108 ~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 77766654432 2233334444555555655555444444433 1122222333323333556666666665
Q ss_pred HHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 047305 230 KDSGCSPDFVAYNA-LLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDV 308 (767)
Q Consensus 230 ~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 308 (767)
+..+ |.-...+. +.-+|.+..-++-+.+++.-.... -|| +.
T Consensus 178 L~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pd----------------------------------St 219 (557)
T KOG3785|consen 178 LQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPD----------------------------------ST 219 (557)
T ss_pred HhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCC----------------------------------cH
Confidence 5431 22222221 223344444445444444444432 112 12
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 047305 309 VLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCD-----LGLLDQARSLQVEIWKRDSLPNTHTFTI 383 (767)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 383 (767)
...|..+....+.=+-..|.+-.+++..++-.. | ..+.-+++ -..-+.|.+++-.+.+.- | ..-..
T Consensus 220 iA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~I--P--EARlN 290 (557)
T KOG3785|consen 220 IAKNLKACNLFRLINGRTAEDEKKELADNIDQE----Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKHI--P--EARLN 290 (557)
T ss_pred HHHHHHHHHHhhhhccchhHHHHHHHHhccccc----c-hhHHHHHHcCeEEEeCCccHHHhchHHHhhC--h--Hhhhh
Confidence 222222222222111112222233333321110 0 01111111 123455666655544432 1 23334
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHhhcCCCchhhhhhccCCC
Q 047305 384 LICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGE-------LEKANLLFYKMEIGKNPTLFLRLSQGGN 456 (767)
Q Consensus 384 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 456 (767)
|+-.|.+.++..+|..+.+++.- .++.-|..-.-.+...|+ ..-|.+.|.-.. ++.
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~P----ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG-------------~Sa 353 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLDP----TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVG-------------ESA 353 (557)
T ss_pred heeeecccccHHHHHHHHhhcCC----CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhc-------------ccc
Confidence 55667788888888777766542 122222222222223332 223333332221 111
Q ss_pred Cc-chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 047305 457 RV-HDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYG 535 (767)
Q Consensus 457 ~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 535 (767)
.. .+..--..++..+.-..++++.+-.++.+..--...|.+.+| +..+++..|++.+|.++|-.+....++ |..+|.
T Consensus 354 ~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~ 431 (557)
T KOG3785|consen 354 LECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYK 431 (557)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHH
Confidence 11 122223344555555667788888887776554444555554 678889999999999999888755555 555554
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCC
Q 047305 536 -TLINGLQRVDREEDAFRIFGQMPQNGCTPS-PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGR 599 (767)
Q Consensus 536 -~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 599 (767)
.|+++|.+.++++-|..++-++- .+.+ -.....+...|.+++++--|-+.|+.+-..+|..
T Consensus 432 s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 432 SMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 66788999999999988876653 2222 2344455666888999888888887776666543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.1e-12 Score=108.18 Aligned_cols=206 Identities=12% Similarity=-0.020 Sum_probs=168.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHh
Q 047305 533 TYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQ 612 (767)
Q Consensus 533 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 612 (767)
+...|.-.|...|++..|..-++++++.+ +.+..++..+...|.+.|+.+.|.+.|+++++..|.+.+++++.+..+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 46677788999999999999999999864 44566888888889999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHH-hhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHH
Q 047305 613 KGEVENAIQGLLE-MDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMD 691 (767)
Q Consensus 613 ~g~~~~A~~~~~~-~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 691 (767)
.|++++|...|.+ +....-|..+.+|.+++.+-.+.|+.+.|.++|++.++.+ |..+.+...+++...+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence 9999999999998 5555556667789999999999999999999999999998 7888899999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCCCCCcch
Q 047305 692 VFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCRMKSVGYDLDACLY 745 (767)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 745 (767)
++++....+- +...+ ..|...+.+..|+ -+.+..+=.++... .|.+..|
T Consensus 195 ~~~~~~~~~~-~~A~s-L~L~iriak~~gd-~~~a~~Y~~qL~r~--fP~s~e~ 243 (250)
T COG3063 195 YLERYQQRGG-AQAES-LLLGIRIAKRLGD-RAAAQRYQAQLQRL--FPYSEEY 243 (250)
T ss_pred HHHHHHhccc-ccHHH-HHHHHHHHHHhcc-HHHHHHHHHHHHHh--CCCcHHH
Confidence 9999876652 44333 3344444546776 55555554444432 4554443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.5e-12 Score=137.60 Aligned_cols=216 Identities=15% Similarity=0.034 Sum_probs=171.7
Q ss_pred CHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHH---------hcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcC
Q 047305 511 NINGALKLFKELQLKGLRPD-SVTYGTLINGLQ---------RVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRR 580 (767)
Q Consensus 511 ~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~---------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 580 (767)
..++|+.+|++..+. .|+ ...+..+..++. ..+++++|...++++++.+ +.+...+..+..++...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 467899999999977 454 345656655543 2345899999999999864 456778888888899999
Q ss_pred ChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHH
Q 047305 581 KFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSV 660 (767)
Q Consensus 581 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 660 (767)
++++|...|+++++.+|+++.++..++.++...|++++|+..+.+.. ..+|.++..+..++.++...|++++|+..+++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al-~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECL-KLDPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999843 24688776666777778889999999999999
Q ss_pred HHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHH
Q 047305 661 LVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCRMKS 735 (767)
Q Consensus 661 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~ 735 (767)
+++...|.++..+..++.+|...|++++|+..++++... .|+.......+...+...| ++|...++++.+
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g---~~a~~~l~~ll~ 501 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS---ERALPTIREFLE 501 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH---HHHHHHHHHHHH
Confidence 987763556777888999999999999999999998653 3665555555555442444 467777777663
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.1e-11 Score=106.64 Aligned_cols=273 Identities=14% Similarity=0.073 Sum_probs=174.5
Q ss_pred cCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChHHH
Q 047305 111 VGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLP---NIVTFSLLINGLSKSGKTEVA 187 (767)
Q Consensus 111 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A 187 (767)
..+.++|+++|-+|.+.. +.+..+.-+|.+.+-+.|..+.|+.+.+.+.+..--+ -..+.-.|..-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 366788888888887633 4444556677777788888888888888877642111 122234455566777888888
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHH
Q 047305 188 IKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDF----VAYNALLNGFCKLRRVDEALALLRS 263 (767)
Q Consensus 188 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~ 263 (767)
..+|..+.+.+.. -....--++..|-...+|++|+++-+++.+.+..+.. ..|.-+...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 8888887765322 3445666777788888888888888877776544332 2345555555566777778888877
Q ss_pred HHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 047305 264 FEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDT 343 (767)
Q Consensus 264 ~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 343 (767)
..+.+.. .+.+-..+.+.+...|++++|.+.++.+.+.++.--..+...|..+|.+.|+.++....+..+.+.... .
T Consensus 206 Alqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g--~ 282 (389)
T COG2956 206 ALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG--A 282 (389)
T ss_pred HHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC--c
Confidence 7765422 344555566777777888888888888777755545556677777778888888887777777765332 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047305 344 YCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCR 390 (767)
Q Consensus 344 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 390 (767)
..-..+........-.+.|...+.+-+... |+...+..+++....
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~--Pt~~gf~rl~~~~l~ 327 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRRK--PTMRGFHRLMDYHLA 327 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhhC--CcHHHHHHHHHhhhc
Confidence 233333333334444555555555544432 666666666665543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.6e-08 Score=105.54 Aligned_cols=369 Identities=14% Similarity=0.125 Sum_probs=229.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 047305 313 VMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNG 392 (767)
Q Consensus 313 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 392 (767)
-|+.-.-+.++..-.+..++...+.|.. +..+++++...|...++-.+- .++.+..-| +..+.-||...
T Consensus 843 eLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~------fLkeN~yYD----s~vVGkYCEKR 911 (1666)
T KOG0985|consen 843 ELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPER------FLKENPYYD----SKVVGKYCEKR 911 (1666)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHH------hcccCCcch----hhHHhhhhccc
Confidence 3445556677777777888888888877 888888888888766543321 112222112 22344566555
Q ss_pred CHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchh---hhh-hccCCCCcchHHHH
Q 047305 393 MVDDAQKLFNKMEK----AGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTL---FLR-LSQGGNRVHDKASL 464 (767)
Q Consensus 393 ~~~~A~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~ 464 (767)
++.-|.-.+++-.. .++......|....+-+.+..+.+- |.+.....+|.. +.. ....-....+++..
T Consensus 912 DP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~L----W~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~v 987 (1666)
T KOG0985|consen 912 DPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDL----WAKVLNEENPYRRQLIDQVVQTALPETQDPEEV 987 (1666)
T ss_pred CCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHH----HHHHHhccChHHHHHHHHHHHhcCCccCChHHH
Confidence 55444333322100 0011122334444444444444332 222211111110 000 01112223566677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 047305 465 QTMVEQYCTAGLIHKAYKILMQLAESG--NLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQ 542 (767)
Q Consensus 465 ~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 542 (767)
...+.+++..+-..+-+++++++.-.. +..+...-|.|+-.-.+. +.....++.+++-..+ . -.++..+.
T Consensus 988 S~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD----a---~~ia~iai 1059 (1666)
T KOG0985|consen 988 SVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD----A---PDIAEIAI 1059 (1666)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC----c---hhHHHHHh
Confidence 778888899999999999999886431 111223334444443333 4556666666654332 1 12345566
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHH
Q 047305 543 RVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQG 622 (767)
Q Consensus 543 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 622 (767)
..+-+++|..+|++. ..+....+.+++ .-+..+.|.++-++. +.+.+|..++.+-.+.|...+|++.
T Consensus 1060 ~~~LyEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieS 1126 (1666)
T KOG0985|consen 1060 ENQLYEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIES 1126 (1666)
T ss_pred hhhHHHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHH
Confidence 777889999999765 334455555554 467788888876654 6778899999999999999999988
Q ss_pred HHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 047305 623 LLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFI 702 (767)
Q Consensus 623 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 702 (767)
+.+.+ +|+.|...+.+..+.|+|++-+.++..+++.. ..+.+-..|+.+|.+.|++.+-.+.+ .|
T Consensus 1127 yikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~--~E~~id~eLi~AyAkt~rl~elE~fi-----~g-- 1191 (1666)
T KOG0985|consen 1127 YIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKV--REPYIDSELIFAYAKTNRLTELEEFI-----AG-- 1191 (1666)
T ss_pred HHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh--cCccchHHHHHHHHHhchHHHHHHHh-----cC--
Confidence 87654 45569999999999999999999999998875 33455567888999999988876654 24
Q ss_pred CCHHHHHHHHHHHhhcCCccHHHHHHHHHHHH
Q 047305 703 LRPRVCNYLLRSLLFSKDNKKVHAYHLLCRMK 734 (767)
Q Consensus 703 ~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~ 734 (767)
|+.....+.....+ ..+. ++.|.-++....
T Consensus 1192 pN~A~i~~vGdrcf-~~~~-y~aAkl~y~~vS 1221 (1666)
T KOG0985|consen 1192 PNVANIQQVGDRCF-EEKM-YEAAKLLYSNVS 1221 (1666)
T ss_pred CCchhHHHHhHHHh-hhhh-hHHHHHHHHHhh
Confidence 88888888888877 7776 777777766544
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.1e-08 Score=107.02 Aligned_cols=183 Identities=15% Similarity=0.042 Sum_probs=132.7
Q ss_pred CCchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 047305 77 NGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVY 156 (767)
Q Consensus 77 ~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 156 (767)
++...+...|-+..+.+. .-...|..|...|....+...|.+.|++..+.+ ..+..........|+...+++.|..+.
T Consensus 472 K~~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hhHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHH
Confidence 345666777766666553 334678888888888888889999999988766 567778888999999999999999885
Q ss_pred HHHHHCCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCC
Q 047305 157 YEMVKLNCLPNIVT--FSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGC 234 (767)
Q Consensus 157 ~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 234 (767)
-...+.. +.-... |....-.|...+++..|..-|+...+..+. |...|..++.+|.+.|++..|+++|.+....
T Consensus 550 l~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L-- 625 (1238)
T KOG1127|consen 550 LRAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL-- 625 (1238)
T ss_pred HHHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--
Confidence 4443321 111222 222334466778899999999998887544 7888999999999999999999999888764
Q ss_pred CCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHh
Q 047305 235 SPDFVAYNA--LLNGFCKLRRVDEALALLRSFEK 266 (767)
Q Consensus 235 ~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~ 266 (767)
.|+. +|.. ..-.-+..|.+.++...+..+..
T Consensus 626 rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 626 RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4443 2322 22334578899999988888754
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.9e-08 Score=105.00 Aligned_cols=315 Identities=16% Similarity=0.162 Sum_probs=161.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 047305 342 DTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSL--PNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNAL 419 (767)
Q Consensus 342 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 419 (767)
|+......+.++...+-..+-.++++.++-.+.. -+...-+.|+-.. -.-+...+.++.+++..-+. |+ +
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtA-ikad~trVm~YI~rLdnyDa-~~------i 1054 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTA-IKADRTRVMEYINRLDNYDA-PD------I 1054 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHH-hhcChHHHHHHHHHhccCCc-hh------H
Confidence 4555566677777788888888888877654321 2233334444333 33455666666666654321 22 2
Q ss_pred HHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhH
Q 047305 420 IDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITY 499 (767)
Q Consensus 420 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 499 (767)
.......+-+++|..+|++.. .+..+...+++ .-+.++.|.++-++.. .+..|
T Consensus 1055 a~iai~~~LyEEAF~ifkkf~------------------~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vW 1107 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFD------------------MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVW 1107 (1666)
T ss_pred HHHHhhhhHHHHHHHHHHHhc------------------ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHH
Confidence 334456677888888887763 12222222222 1234444444443322 23456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhc
Q 047305 500 NSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRR 579 (767)
Q Consensus 500 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 579 (767)
..+..+-...|.+.+|++-|-+. .|+..|..+++...+.|++++-.+++..+++..-.|...+ .++-+|++.
T Consensus 1108 sqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt 1179 (1666)
T KOG0985|consen 1108 SQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKT 1179 (1666)
T ss_pred HHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHh
Confidence 66666666666666665544332 1444566666666666666666666655554433333322 345555666
Q ss_pred CChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHH
Q 047305 580 RKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFS 659 (767)
Q Consensus 580 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 659 (767)
++..+-+++. .. ++..-....+.-+...|.++.|.-.+..+. -|..|+..+...|.|+.|...-+
T Consensus 1180 ~rl~elE~fi-----~g-pN~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1180 NRLTELEEFI-----AG-PNVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred chHHHHHHHh-----cC-CCchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhh
Confidence 6655554432 11 222222344555555555555532222221 15555666666666665555544
Q ss_pred HHHH----------------------cC--CCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047305 660 VLVE----------------------CK--AIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSL 715 (767)
Q Consensus 660 ~~~~----------------------~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l 715 (767)
++-. .| +--...-+..++.-|...|-+++-+.+++.++ |++-.+.-...=++.|
T Consensus 1245 KAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L--GLERAHMgmfTELaiL 1322 (1666)
T KOG0985|consen 1245 KANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL--GLERAHMGMFTELAIL 1322 (1666)
T ss_pred hccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh--chhHHHHHHHHHHHHH
Confidence 4421 11 11122334456666677777777777776664 3443333333334444
Q ss_pred h
Q 047305 716 L 716 (767)
Q Consensus 716 ~ 716 (767)
+
T Consensus 1323 Y 1323 (1666)
T KOG0985|consen 1323 Y 1323 (1666)
T ss_pred H
Confidence 4
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.8e-12 Score=114.69 Aligned_cols=231 Identities=15% Similarity=0.039 Sum_probs=197.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHh
Q 047305 499 YNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCR 578 (767)
Q Consensus 499 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 578 (767)
-+.+..+|.+.|.+.+|.+.++...+. .|-..||..|..+|.+.++...|+.++.+-++. ++-+........+++..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 367889999999999999999999887 677888999999999999999999999998874 34455555567788999
Q ss_pred cCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHH
Q 047305 579 RRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIF 658 (767)
Q Consensus 579 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 658 (767)
.++.++|.++|+.+++..|.+..+.-.++..|.-.+++|-|+..+.++..- .-.++..|.+++-+|...+.+|-++..|
T Consensus 303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GAQSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHh-cCCChHHHhhHHHHHHhhcchhhhHHHH
Confidence 999999999999999999999999999999999999999999998884322 2567788999999999999999999999
Q ss_pred HHHHHcCCCC--ChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHc
Q 047305 659 SVLVECKAIV--TPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCRMKSV 736 (767)
Q Consensus 659 ~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~~ 736 (767)
++++..--.| -..+|..++.+....|++.-|.+.|+-++..+ +++......++.|..+.|+ .++|..+++-..+.
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d--~~h~ealnNLavL~~r~G~-i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD--AQHGEALNNLAVLAARSGD-ILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC--cchHHHHHhHHHHHhhcCc-hHHHHHHHHHhhhh
Confidence 9997654223 36789999999999999999999999998765 7776666677777768888 99999999987754
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.7e-11 Score=117.38 Aligned_cols=199 Identities=16% Similarity=0.042 Sum_probs=142.1
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHH
Q 047305 496 IITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTW 575 (767)
Q Consensus 496 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 575 (767)
...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3455566667777777777777777776553 1234556666677777777777777777776643 3345566666777
Q ss_pred HHhcCChhHHHHHHHHHHhcc--CCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHH
Q 047305 576 SCRRRKFSLAFSLWLQYLRDI--SGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKE 653 (767)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 653 (767)
+...|++++|.+.++++++.. |.....+..++.++...|++++|...+.+... ..|.++..+..++.++...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ-IDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCcCChHHHHHHHHHHHHcCCHHH
Confidence 777777888877777777542 34445666777788888888888777777322 346667778888888888899999
Q ss_pred HHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 654 ALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 654 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
|...++++++.. +.++..+..++.++...|+.++|..+++.+.+
T Consensus 188 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999988887774 66777777888888888998888888877653
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.1e-10 Score=109.96 Aligned_cols=418 Identities=13% Similarity=0.067 Sum_probs=223.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 047305 246 NGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVK 325 (767)
Q Consensus 246 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 325 (767)
.+.+..|+++.|...|-+....... |...|+.-..+|...|++++|..=-.+-.+..+. -...|+-...++.-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~-w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD-WAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc-hhhHHHHhHHHHHhcccHH
Confidence 4566789999999999998876533 7788888999999999999998766666655332 3457888899999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH---HHHHHHHhCCC---CCCHHHHHHHHHHHHhc--------
Q 047305 326 DAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQAR---SLQVEIWKRDS---LPNTHTFTILICGMCRN-------- 391 (767)
Q Consensus 326 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~---~~~~~~~~~~~---~~~~~~~~~l~~~~~~~-------- 391 (767)
+|+.-|.+-.+.... |...+..+..++.......+.. .++........ ......|..++..+-+.
T Consensus 88 eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 999999988876433 6677777777772111000000 00000000000 00011111121111100
Q ss_pred --CCHHHHHHHHHHH-----HHcC-------CCC------------C----------HHHHHHHHHHHHHcCCHHHHHHH
Q 047305 392 --GMVDDAQKLFNKM-----EKAG-------CFP------------S----------VGMFNALIDGLCKAGELEKANLL 435 (767)
Q Consensus 392 --g~~~~A~~~~~~~-----~~~~-------~~~------------~----------~~~~~~l~~~~~~~~~~~~A~~~ 435 (767)
..+..|.-.+... ...+ ..| | ..-...+..+..+..+++.|++.
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 0000111100000 0000 000 0 00122333444444445555554
Q ss_pred HHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHH-------HHHHHHh
Q 047305 436 FYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNS-------LINGFCK 508 (767)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~ 508 (767)
+.... . ...+...++....++...|.+..+........+.|.. ...-|+. +..+|.+
T Consensus 247 y~~a~--------------e-l~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k 310 (539)
T KOG0548|consen 247 YAKAL--------------E-LATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTK 310 (539)
T ss_pred HHHHH--------------h-HhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhh
Confidence 44442 0 1133334444555555555555555555544444321 1111211 2224444
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHH
Q 047305 509 VGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSL 588 (767)
Q Consensus 509 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 588 (767)
.++++.|+..|.+.......|+. ..+....+++........-.+... ..-...-+..+.+.|++..|+..
T Consensus 311 ~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~ 380 (539)
T KOG0548|consen 311 REDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKH 380 (539)
T ss_pred HHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHH
Confidence 45555566665555443222211 122223333333333332222111 11122224446677778888888
Q ss_pred HHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHH-hhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCC
Q 047305 589 WLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLE-MDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAI 667 (767)
Q Consensus 589 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 667 (767)
|.++++.+|+++..|.+.+.+|.+.|.+..|++.... +. .+|.....|..=+.++....+|++|++.|++.++.+ |
T Consensus 381 YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie--L~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d-p 457 (539)
T KOG0548|consen 381 YTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIE--LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD-P 457 (539)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-c
Confidence 8777777777777777777778888877777777655 33 357777777777777777777888888888877776 6
Q ss_pred CChHhHHHHHHHHHhcCChhHHHHHHHH
Q 047305 668 VTPPSCVKLIHGLCKRGYLDLAMDVFLY 695 (767)
Q Consensus 668 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 695 (767)
.+......+.+++.....-....+..++
T Consensus 458 ~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 458 SNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred hhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 6666666666666654333445555554
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.6e-09 Score=106.67 Aligned_cols=292 Identities=14% Similarity=0.045 Sum_probs=142.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcc
Q 047305 380 TFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVH 459 (767)
Q Consensus 380 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (767)
++..+...|...|++++|+.++++.+++.++ .+..|..-...+-+.|++.+|.+..+... .-...
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar--------------~LD~~ 260 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEAR--------------ELDLA 260 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHH--------------hCChh
Confidence 3345556666777777777777777665322 24566666667777777777777776664 22234
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--Hh----hH--HHHHHHHHhcCCHHHHHHHHHHHHHC--CCCC
Q 047305 460 DKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPD--II----TY--NSLINGFCKVGNINGALKLFKELQLK--GLRP 529 (767)
Q Consensus 460 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~----~~--~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p 529 (767)
|...-+..+..+.+.|++++|.+++....+.+..|- .. .| .....+|.+.|++..|++.|..+.+. .+.-
T Consensus 261 DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~ 340 (517)
T PF12569_consen 261 DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEE 340 (517)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Confidence 444555566666677777777777776665543221 11 22 34457788888888888777776643 1122
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC---HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHH
Q 047305 530 DSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPS---PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKS 606 (767)
Q Consensus 530 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 606 (767)
|..-|.. .|.+.+-+..=+++++---. +... .......+++|.+..+-......-..-....+.++.-....
T Consensus 341 DQfDFH~---Yc~RK~t~r~Y~~~L~~ed~--l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~ 415 (517)
T PF12569_consen 341 DQFDFHS---YCLRKMTLRAYVDMLRWEDK--LRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKA 415 (517)
T ss_pred ccccHHH---HHHhhccHHHHHHHHHHHHH--hhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHH
Confidence 2222211 13333332222222211110 1111 11111222222221111100000000000000000000000
Q ss_pred ---HHHHHhcCCHHHHHHHHHH------------hhhcCCCCCccchHHHHHHHhhcC-CHHHHHHHHHHHHHcCCCCCh
Q 047305 607 ---IEEFLQKGEVENAIQGLLE------------MDFKLNDFQLAPYTIWLIGLCQDG-QVKEALNIFSVLVECKAIVTP 670 (767)
Q Consensus 607 ---~~~~~~~g~~~~A~~~~~~------------~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~ 670 (767)
..--.+..+.+++...-.+ ......+.++. -+|.-+.+.. =+++|.++++.+.+.+ +.+.
T Consensus 416 ~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~D---p~GekL~~t~dPLe~A~kfl~pL~~~a-~~~~ 491 (517)
T PF12569_consen 416 KKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDD---PLGEKLLKTEDPLEEAMKFLKPLLELA-PDNI 491 (517)
T ss_pred HHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCC---ccHHHHhcCCcHHHHHHHHHHHHHHhC-ccch
Confidence 0000111111111111000 00011223332 2455555554 5799999999999987 8889
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHH
Q 047305 671 PSCVKLIHGLCKRGYLDLAMDVFLY 695 (767)
Q Consensus 671 ~~~~~l~~~~~~~g~~~~A~~~~~~ 695 (767)
.+|..-..+|.+.|++=-|.+.+.+
T Consensus 492 et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 492 ETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred hhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 9999999999999999999888765
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.1e-08 Score=99.97 Aligned_cols=191 Identities=16% Similarity=0.148 Sum_probs=102.4
Q ss_pred HHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 047305 107 GYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEV 186 (767)
Q Consensus 107 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 186 (767)
+-.....|.+|+.+++.+.... .-.--|..+...|+..|+++.|.++|-+.- .++-.|.+|.+.|+|+.
T Consensus 741 aai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence 3344556666666666555422 122234555666666777777766664421 34555666777777777
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047305 187 AIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEK 266 (767)
Q Consensus 187 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 266 (767)
|.++-++... .......|.+-..-+-..|++.+|.++|-.+. .|+. .|.+|-+.|..+..+++.++-..
T Consensus 810 a~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~ 878 (1636)
T KOG3616|consen 810 AFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHG 878 (1636)
T ss_pred HHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhCh
Confidence 7666555432 23344555555555666666666666654332 2332 34556666666666666554322
Q ss_pred CCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047305 267 DGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLL 331 (767)
Q Consensus 267 ~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 331 (767)
. .-..+...+..-|-..|++..|..-|-+.- -|..-++.|-..+.+++|.++-
T Consensus 879 d---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 879 D---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred h---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHH
Confidence 1 112344445555666666666665553322 1344445555555555555443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.6e-08 Score=96.91 Aligned_cols=434 Identities=14% Similarity=0.096 Sum_probs=255.6
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC
Q 047305 208 IVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAK 287 (767)
Q Consensus 208 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 287 (767)
+.|+.|.+.|.+..|......-.. +..|......+..++.+..-+++|-.+|+++.. +...+.+|-+-.
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgd 688 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGD 688 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHccc
Confidence 345666666666666554321111 223555555556666666666666666665532 122334443333
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047305 288 RYDEAYAWYRKMFEEKIEPDVVLY-GVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQ 366 (767)
Q Consensus 288 ~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 366 (767)
-+.+|.++-+-.. +..+++. ......+...|+++.|..-|-+... ....+.+......+.+|..++
T Consensus 689 af~kaielarfaf----p~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~il 755 (1636)
T KOG3616|consen 689 AFGKAIELARFAF----PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISIL 755 (1636)
T ss_pred HHHHHHHHHHhhC----cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHH
Confidence 3455554433221 1111111 1223344556777777766654321 223455556678888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCch
Q 047305 367 VEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPT 446 (767)
Q Consensus 367 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 446 (767)
+.+..... ...-|..+.+.|...|+++.|.++|.+.- .++-.|..|.+.|+|+.|.++-.+..
T Consensus 756 dniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~------ 818 (1636)
T KOG3616|consen 756 DNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH------ 818 (1636)
T ss_pred HHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc------
Confidence 88776543 33456777888999999999998886532 23456778899999999988877763
Q ss_pred hhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047305 447 LFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKG 526 (767)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 526 (767)
+.......|..-.+-+-..|++.+|.+++-.+. .|+. .|..|-+.|..++.+++.++-.-.
T Consensus 819 ---------~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~d- 879 (1636)
T KOG3616|consen 819 ---------GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGD- 879 (1636)
T ss_pred ---------CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhChh-
Confidence 333455666667777778888888877765442 3443 466788899988888887664321
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHH
Q 047305 527 LRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKS 606 (767)
Q Consensus 527 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 606 (767)
.-..|-..+..-+-..|+.+.|...|-++. -|.+.+.+|...+-|++|..+- ......+..-....
T Consensus 880 --~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayria---ktegg~n~~k~v~f 945 (1636)
T KOG3616|consen 880 --HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIA---KTEGGANAEKHVAF 945 (1636)
T ss_pred --hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHH---hccccccHHHHHHH
Confidence 123456667777888899999988876554 2455667777778888876652 22233333322222
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 047305 607 IEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYL 686 (767)
Q Consensus 607 ~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 686 (767)
.+ .+.=--+.|++.+.+... +..-+..-+..+.++-|.++-+-..+. ..+.+...++.-+...|++
T Consensus 946 lw--aksiggdaavkllnk~gl---------l~~~id~a~d~~afd~afdlari~~k~---k~~~vhlk~a~~ledegk~ 1011 (1636)
T KOG3616|consen 946 LW--AKSIGGDAAVKLLNKHGL---------LEAAIDFAADNCAFDFAFDLARIAAKD---KMGEVHLKLAMFLEDEGKF 1011 (1636)
T ss_pred HH--HHhhCcHHHHHHHHhhhh---------HHHHhhhhhcccchhhHHHHHHHhhhc---cCccchhHHhhhhhhccch
Confidence 22 222222455555555321 223333445567777777776665543 3345566677777888888
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHH-----HHHHhhcCCccHHHHHHHHHH
Q 047305 687 DLAMDVFLYTLKNGFILRPRVCNYL-----LRSLLFSKDNKKVHAYHLLCR 732 (767)
Q Consensus 687 ~~A~~~~~~~~~~~~~~~~~~~~~l-----~~~l~~~~~~~~~~a~~~~~~ 732 (767)
++|-+.|-++++.+ .-+.+|..- =.-+. +.|++.++|..||-+
T Consensus 1012 edaskhyveaikln--tynitwcqavpsrfd~e~i-r~gnkpe~av~mfi~ 1059 (1636)
T KOG3616|consen 1012 EDASKHYVEAIKLN--TYNITWCQAVPSRFDAEFI-RAGNKPEEAVEMFIH 1059 (1636)
T ss_pred hhhhHhhHHHhhcc--cccchhhhcccchhhHHHH-HcCCChHHHHHHhhh
Confidence 88888888887643 334444331 11122 556557777777643
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.6e-12 Score=114.26 Aligned_cols=243 Identities=12% Similarity=0.015 Sum_probs=206.6
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH-HHHH
Q 047305 460 DKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTY-GTLI 538 (767)
Q Consensus 460 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~ 538 (767)
+-..-..+..+|.+.|-+.+|.+.|+..++. .|-+.||..|-.+|.+..++..|+.++.+-.+. .|-.+|| ....
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~A 297 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQA 297 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhH
Confidence 3344467899999999999999999998887 455667888899999999999999999999876 5666665 4677
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHH
Q 047305 539 NGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVEN 618 (767)
Q Consensus 539 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 618 (767)
+.+...++.++|.++|+...+.. +.+.+...++...|.-.++++-|..+|+++++..-.++..+.+++-++.-.++++-
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhh
Confidence 88889999999999999998863 56777888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHH-hhhcCCCC-CccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047305 619 AIQGLLE-MDFKLNDF-QLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYT 696 (767)
Q Consensus 619 A~~~~~~-~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 696 (767)
++..+.+ +.....|+ -..+|.+++.+....|++.-|...|+-++..+ +.+...++.|+-.-.+.|++++|+.+++.+
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 9988888 33222233 34579999999999999999999999999887 788899999999999999999999999998
Q ss_pred HHCCCCCCHHHHHH
Q 047305 697 LKNGFILRPRVCNY 710 (767)
Q Consensus 697 ~~~~~~~~~~~~~~ 710 (767)
.. ..|+-...+.
T Consensus 456 ~s--~~P~m~E~~~ 467 (478)
T KOG1129|consen 456 KS--VMPDMAEVTT 467 (478)
T ss_pred hh--hCcccccccc
Confidence 65 4476544443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.43 E-value=5e-08 Score=102.26 Aligned_cols=623 Identities=10% Similarity=-0.028 Sum_probs=359.1
Q ss_pred hhhHHHHHHHHhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCC-CCCCHHHHHHHHH
Q 047305 63 FASNSAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESFGKMKEFD-CQPDVYIYNAVLN 141 (767)
Q Consensus 63 ~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~ 141 (767)
..+|..+..++....+...|.+.|+.+.+.+ +.+...+......|+...+++.|..+.-...+.. ...-...|....-
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 4677778888877777788889999888776 4567788889999999999999998843332211 0111223444555
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHccCCHh
Q 047305 142 IAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNK-FTYTIVISGLCQINRAD 220 (767)
Q Consensus 142 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~ 220 (767)
.+...+++..|..-|+...+.. +.|...|..++.+|..+|.+..|.++|++.... .|+. ..--.....-+..|.+.
T Consensus 571 yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYk 647 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYK 647 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHH
Confidence 5778899999999999998876 678889999999999999999999999988875 2322 12122233456678999
Q ss_pred HHHHHHHHHHHC------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hCCCCCCcccHHHHHHHHHhcC
Q 047305 221 EAYRLFLKMKDS------GCSPDFVAYNALLNGFCKLRRVDEALALLRSFE-------KDGFVPRLGSYSCLIDGLFRAK 287 (767)
Q Consensus 221 ~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~li~~~~~~~ 287 (767)
+|+..+...... +..--..++..+...+.-.|-..++..++++-. ......+...|..+-.+|.-.-
T Consensus 648 eald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~ 727 (1238)
T KOG1127|consen 648 EALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFS 727 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHH
Confidence 999988877542 111112233333333333343334444443322 2111112222222222211100
Q ss_pred CHH------HHHHH-HHHHHHCCCC--------------------CCHHHHHHHHHHHHh------c--CCHHHHHHHHH
Q 047305 288 RYD------EAYAW-YRKMFEEKIE--------------------PDVVLYGVMIRGLSE------A--GKVKDAMKLLS 332 (767)
Q Consensus 288 ~~~------~A~~~-~~~~~~~~~~--------------------~~~~~~~~l~~~~~~------~--g~~~~a~~~~~ 332 (767)
..+ .-..+ +.+....+.. .+..+|..++..|.+ . .+...|...++
T Consensus 728 q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~K 807 (1238)
T KOG1127|consen 728 QEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCK 807 (1238)
T ss_pred HhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHH
Confidence 000 00000 1111111111 123344444444433 1 12345677777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 047305 333 DMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPS 412 (767)
Q Consensus 333 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 412 (767)
+.++..-. +..+|+.|.-. ...|.+.-+...|-.-....+ ....+|..+.-.+.+..+++.|...|...+...+. +
T Consensus 808 kaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~sep-~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~-n 883 (1238)
T KOG1127|consen 808 KAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFSEP-TCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPL-N 883 (1238)
T ss_pred HHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhccc-cchhheeccceeEEecccHHHhhHHHHhhhhcCch-h
Confidence 76654322 55666655444 555677777666655544433 45677888888888999999999999998876533 5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHH----------
Q 047305 413 VGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYK---------- 482 (767)
Q Consensus 413 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~---------- 482 (767)
...|..........|+.-++..+|..-.. +....+..+....+..........|+.++-+.
T Consensus 884 l~~WlG~Ali~eavG~ii~~~~lfaHs~e---------l~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~ 954 (1238)
T KOG1127|consen 884 LVQWLGEALIPEAVGRIIERLILFAHSDE---------LCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASL 954 (1238)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHhhHH---------hhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHH
Confidence 56666655556667888888877765210 00111122223333333334444455444333
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhhHH----HHHHHHHhcCCHHHHHHHHHHh
Q 047305 483 ILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLK-GLRPDSVTYG----TLINGLQRVDREEDAFRIFGQM 557 (767)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~----~l~~~~~~~~~~~~A~~~~~~~ 557 (767)
.+++.... .+.+.+.|...+...-+.+.+.+|.++..+.+.. ..+.+...|+ .+.+.++..|.++.|...+...
T Consensus 955 al~~yf~~-~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~ 1033 (1238)
T KOG1127|consen 955 ALSYYFLG-HPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKE 1033 (1238)
T ss_pred HHHHHHhc-CcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhccc
Confidence 33333332 2345677777777777888888888877776521 1123444444 3344566677777666555433
Q ss_pred hhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccch---HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC
Q 047305 558 PQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDES---MKSIEEFLQKGEVENAIQGLLEMDFKLNDFQ 634 (767)
Q Consensus 558 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~ 634 (767)
.. ..+......-+..+ -.|+++++.+.|++++....++.... ...+......+..+.|...+.+.... .|.+
T Consensus 1034 ~~---evdEdi~gt~l~lF-fkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~l-s~~~ 1108 (1238)
T KOG1127|consen 1034 WM---EVDEDIRGTDLTLF-FKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSL-SKVQ 1108 (1238)
T ss_pred ch---hHHHHHhhhhHHHH-HHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHh-Cccc
Confidence 21 11222222222222 35899999999999997665555533 34455556677778888888774332 3555
Q ss_pred ccchHHHHHHHhhcCCHHHHHHHHHHHHHcC----CCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHH
Q 047305 635 LAPYTIWLIGLCQDGQVKEALNIFSVLVECK----AIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRP-RVCN 709 (767)
Q Consensus 635 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~ 709 (767)
..++..+..++.-..+-.....+.++..+.- +-.++. ...--+|.+.|+-.-..+.+++++... |.. .+|.
T Consensus 1109 ~~sll~L~A~~ild~da~~ssaileel~kl~k~e~~~~~~~--ll~e~i~~~~~r~~~vk~~~qr~~h~~--P~~~~~Ws 1184 (1238)
T KOG1127|consen 1109 ASSLLPLPAVYILDADAHGSSAILEELEKLLKLEWFCWPPG--LLKELIYALQGRSVAVKKQIQRAVHSN--PGDPALWS 1184 (1238)
T ss_pred hhhHHHHHHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChh--HHHHHHHHHhhhhHHHHHHHHHHHhcC--CCChHHHH
Confidence 5557777777666555444444444443221 111111 123336788999999999999998744 654 4444
Q ss_pred HHH
Q 047305 710 YLL 712 (767)
Q Consensus 710 ~l~ 712 (767)
-|-
T Consensus 1185 lL~ 1187 (1238)
T KOG1127|consen 1185 LLS 1187 (1238)
T ss_pred HHH
Confidence 433
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.3e-08 Score=97.86 Aligned_cols=151 Identities=11% Similarity=0.006 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH--------HhhhCCCCCCHhhHHHHHHHHHhcCCh
Q 047305 511 NINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFG--------QMPQNGCTPSPAVYKSLMTWSCRRRKF 582 (767)
Q Consensus 511 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~ 582 (767)
.+.+|.+++....+....-...+....+......|+++.|++++. .+.+.+.. +.+...+...+.+.++-
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCC
Confidence 466777777776655222122344455555667788888888877 44443333 34444566667777777
Q ss_pred hHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHH
Q 047305 583 SLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLV 662 (767)
Q Consensus 583 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 662 (767)
+.|..++.++++. +...... .+.-...+..++..-.+.|+-++|...++++.
T Consensus 434 ~~a~~vl~~Ai~~---------------------------~~~~~t~-s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~ 485 (652)
T KOG2376|consen 434 DSASAVLDSAIKW---------------------------WRKQQTG-SIALLSLMREAAEFKLRHGNEEEASSLLEELV 485 (652)
T ss_pred ccHHHHHHHHHHH---------------------------HHHhccc-chHHHhHHHHHhHHHHhcCchHHHHHHHHHHH
Confidence 7777776666521 1111000 01111223334444445577777777777777
Q ss_pred HcCCCCChHhHHHHHHHHHhcCChhHHHHHH
Q 047305 663 ECKAIVTPPSCVKLIHGLCKRGYLDLAMDVF 693 (767)
Q Consensus 663 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 693 (767)
+.+ ++|..+...++-+|++.. .+.|..+-
T Consensus 486 k~n-~~d~~~l~~lV~a~~~~d-~eka~~l~ 514 (652)
T KOG2376|consen 486 KFN-PNDTDLLVQLVTAYARLD-PEKAESLS 514 (652)
T ss_pred HhC-CchHHHHHHHHHHHHhcC-HHHHHHHh
Confidence 665 666666666666666653 45555543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.3e-08 Score=103.13 Aligned_cols=130 Identities=23% Similarity=0.207 Sum_probs=80.8
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047305 275 SYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFC 354 (767)
Q Consensus 275 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 354 (767)
++..+...|...|++++|+.++++.+++.+. .+..|..-.+.+-+.|++.+|.+.++.....+.. |...-+-.+..+.
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~L 273 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHH
Confidence 3445566666777777777777777766432 3556666677777777777777777777666443 5555555666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047305 355 DLGLLDQARSLQVEIWKRDSLPNT--------HTFTILICGMCRNGMVDDAQKLFNKMEK 406 (767)
Q Consensus 355 ~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 406 (767)
+.|+.++|.+++....+.+..|.. .-......+|.+.|++..|++.|..+.+
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 777777777777766665532211 1113345566677777777666665544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.4e-10 Score=111.74 Aligned_cols=217 Identities=17% Similarity=0.039 Sum_probs=160.9
Q ss_pred CCHHHHHHHHHHHHHcCC-CC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 047305 475 GLIHKAYKILMQLAESGN-LP--DIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAF 551 (767)
Q Consensus 475 g~~~~A~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~ 551 (767)
+..+.++.-+.+++.... .| ....|..+...|...|+.++|...|++..+.... +...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 455777777777775422 12 2356778888899999999999999999987432 5678999999999999999999
Q ss_pred HHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 047305 552 RIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLN 631 (767)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 631 (767)
..|+++++.. +.+..++..++.++...|++++|.+.|+++++..|.++.... ........+++++|+..+.+.....+
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~-~~~l~~~~~~~~~A~~~l~~~~~~~~ 196 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRAL-WLYLAESKLDPKQAKENLKQRYEKLD 196 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHccCCHHHHHHHHHHHHhhCC
Confidence 9999999853 335677888888899999999999999999999999874221 12334567889999999977443323
Q ss_pred CCCccchHHHHHHHhhcCCHHHHHHHHHHHH-------HcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047305 632 DFQLAPYTIWLIGLCQDGQVKEALNIFSVLV-------ECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 632 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 700 (767)
|+. |. .+.++...|++.++ ..++.+. +.+ +..+.+|..+|.++...|++++|+..|+++++.+
T Consensus 197 ~~~---~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~-~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 197 KEQ---WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELA-ERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred ccc---cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 322 32 34555556766554 3444443 222 3345689999999999999999999999998754
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-07 Score=94.28 Aligned_cols=455 Identities=15% Similarity=0.120 Sum_probs=228.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHH-
Q 047305 103 VLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSL--LINGLS- 179 (767)
Q Consensus 103 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~~~- 179 (767)
+=+..+...|++++|++...++...+ +.+...+..=+.++++.+.+++|..+.+.-.. ..+++. +=.+||
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~ 89 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCE 89 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHH
Confidence 33455566677777777777777654 55555666666677777777777754443221 111111 223343
Q ss_pred -hcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHH
Q 047305 180 -KSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFV--AYNALLNGFCKLRRVDE 256 (767)
Q Consensus 180 -~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~ 256 (767)
+.+..++|+..++..... +..+...-...+.+.|++++|+++|+.+.+++.+ +.. .-..++.+- ..-.
T Consensus 90 Yrlnk~Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d~d~~~r~nl~a~~----a~l~ 160 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-DQDEERRANLLAVA----AALQ 160 (652)
T ss_pred HHcccHHHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHH----Hhhh
Confidence 567888888777733221 3345666667778888888888888888766432 211 111111111 0011
Q ss_pred HHHHHHHHHhCCCCCCcccHHHH---HHHHHhcCCHHHHHHHHHHHHHC-------CCCC------CH-HHHHHHHHHHH
Q 047305 257 ALALLRSFEKDGFVPRLGSYSCL---IDGLFRAKRYDEAYAWYRKMFEE-------KIEP------DV-VLYGVMIRGLS 319 (767)
Q Consensus 257 a~~~~~~~~~~~~~~~~~~~~~l---i~~~~~~~~~~~A~~~~~~~~~~-------~~~~------~~-~~~~~l~~~~~ 319 (767)
+. +.+... ..| ..+|..+ .-.+...|++.+|+++++..... +-.- +. ..-..+.-++.
T Consensus 161 ~~-~~q~v~---~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ 235 (652)
T KOG2376|consen 161 VQ-LLQSVP---EVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQ 235 (652)
T ss_pred HH-HHHhcc---CCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 11 121111 122 2233333 33455677888888887776321 1000 00 01123344555
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---hcCC-HHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 047305 320 EAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFC---DLGL-LDQ-ARSLQVEIWKRDSLPNTHTFTILICGMCRNGMV 394 (767)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~-~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 394 (767)
..|+.++|..++...++.... |.........-+. ...+ ++. +...++.. ..
T Consensus 236 ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~-----------------------~~ 291 (652)
T KOG2376|consen 236 LQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQ-----------------------VF 291 (652)
T ss_pred HhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHH-----------------------HH
Confidence 677777777777777766432 4322222211111 1111 110 00000000 00
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHH-Hh
Q 047305 395 DDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQY-CT 473 (767)
Q Consensus 395 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~ 473 (767)
.-+......+.... .-....-+.++..| .+..+.+.+....+. ...|....-..+..+. ++
T Consensus 292 ~l~~~~l~~Ls~~q-k~~i~~N~~lL~l~--tnk~~q~r~~~a~lp---------------~~~p~~~~~~ll~~~t~~~ 353 (652)
T KOG2376|consen 292 KLAEFLLSKLSKKQ-KQAIYRNNALLALF--TNKMDQVRELSASLP---------------GMSPESLFPILLQEATKVR 353 (652)
T ss_pred HhHHHHHHHHHHHH-HHHHHHHHHHHHHH--hhhHHHHHHHHHhCC---------------ccCchHHHHHHHHHHHHHH
Confidence 11111111111110 00111112222222 233444444444332 1111111111111111 22
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCChhhHHHHHHHHHhcC
Q 047305 474 AGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFK--------ELQLKGLRPDSVTYGTLINGLQRVD 545 (767)
Q Consensus 474 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~~ 545 (767)
...+..|.+++....+............++......|+++.|++++. .+.+.+..|.. ...+...+.+.+
T Consensus 354 ~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~--V~aiv~l~~~~~ 431 (652)
T KOG2376|consen 354 EKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGT--VGAIVALYYKIK 431 (652)
T ss_pred HHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhH--HHHHHHHHHhcc
Confidence 22466777777777666444344555566677778889998888888 55554444443 344555566666
Q ss_pred CHHHHHHHHHHhhhC--CCCCC----HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHH
Q 047305 546 REEDAFRIFGQMPQN--GCTPS----PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENA 619 (767)
Q Consensus 546 ~~~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 619 (767)
+.+.|..++..++.. .-.+. ..++..++..-.+.|+-++|...++++++.+|++..+...++.+|+... .++|
T Consensus 432 ~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka 510 (652)
T KOG2376|consen 432 DNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKA 510 (652)
T ss_pred CCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHH
Confidence 666677777666541 01111 2233333344446799999999999999999999999999998888763 4556
Q ss_pred HHHH
Q 047305 620 IQGL 623 (767)
Q Consensus 620 ~~~~ 623 (767)
...-
T Consensus 511 ~~l~ 514 (652)
T KOG2376|consen 511 ESLS 514 (652)
T ss_pred HHHh
Confidence 4433
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=4e-10 Score=110.23 Aligned_cols=227 Identities=13% Similarity=-0.019 Sum_probs=160.9
Q ss_pred CCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 047305 427 GELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGF 506 (767)
Q Consensus 427 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 506 (767)
+..+.++..+.++..... .........+..++..+...|+.+.|...|++..+..+ .+...|+.+...+
T Consensus 40 ~~~e~~i~~~~~~l~~~~----------~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~ 108 (296)
T PRK11189 40 LQQEVILARLNQILASRD----------LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYL 108 (296)
T ss_pred hHHHHHHHHHHHHHcccc----------CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 455666666666542110 11123355688888899999999999999999988753 3678999999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 047305 507 CKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAF 586 (767)
Q Consensus 507 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 586 (767)
...|++++|+..|++..+.... +..++..+..++...|++++|.+.+++..+. .|+..........+...+++++|.
T Consensus 109 ~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~ 185 (296)
T PRK11189 109 TQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAK 185 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHH
Confidence 9999999999999999986322 3567888888999999999999999999875 344332222233345678899999
Q ss_pred HHHHHHHhccCCCccchHHHHHHHHhcCCHHH--HHHHHHH-h--hhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHH
Q 047305 587 SLWLQYLRDISGRDDESMKSIEEFLQKGEVEN--AIQGLLE-M--DFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVL 661 (767)
Q Consensus 587 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~--A~~~~~~-~--~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 661 (767)
..|.+.....+++. +. .+..+...|+..+ +.+.+.+ . .....|..+.+|..+|.++...|++++|+..|+++
T Consensus 186 ~~l~~~~~~~~~~~--~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~A 262 (296)
T PRK11189 186 ENLKQRYEKLDKEQ--WG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLA 262 (296)
T ss_pred HHHHHHHhhCCccc--cH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99988775543332 21 2344444555433 3333332 1 11223556678999999999999999999999999
Q ss_pred HHcCCCCChH
Q 047305 662 VECKAIVTPP 671 (767)
Q Consensus 662 ~~~~~~~~~~ 671 (767)
++.+ +++..
T Consensus 263 l~~~-~~~~~ 271 (296)
T PRK11189 263 LANN-VYNFV 271 (296)
T ss_pred HHhC-CchHH
Confidence 9987 54543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.6e-10 Score=112.77 Aligned_cols=175 Identities=18% Similarity=0.123 Sum_probs=112.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC-CCh-hhHHHHHHHHHhcCCHHHHHHHHHHhhhC-----CCC-
Q 047305 497 ITYNSLINGFCKVGNINGALKLFKELQLK-----GLR-PDS-VTYGTLINGLQRVDREEDAFRIFGQMPQN-----GCT- 563 (767)
Q Consensus 497 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~-p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~- 563 (767)
.+++.|..+|.+.|++++|...++...+. +.. |.. ..++.++..|...+++++|..+++...+. |..
T Consensus 284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~ 363 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN 363 (508)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccc
Confidence 45666677777888887777777766542 111 111 13556666777778888888777776541 111
Q ss_pred -CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHH
Q 047305 564 -PSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWL 642 (767)
Q Consensus 564 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~ 642 (767)
....++..+...|...|++++|.++|++++ ....+...+..+....+++.|+
T Consensus 364 ~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai---------------------------~~~~~~~~~~~~~~~~~l~~la 416 (508)
T KOG1840|consen 364 VNLAKIYANLAELYLKMGKYKEAEELYKKAI---------------------------QILRELLGKKDYGVGKPLNQLA 416 (508)
T ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHHHHH---------------------------HHHHhcccCcChhhhHHHHHHH
Confidence 124577777778888888888888876665 2333322222344445577888
Q ss_pred HHHhhcCCHHHHHHHHHHHH----HcC--CCCChHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 643 IGLCQDGQVKEALNIFSVLV----ECK--AIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 643 ~~~~~~g~~~~A~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
..|.+.+++.+|..+|.+.. ..| .|....+|..|+.+|.+.|++++|.++.+.+++
T Consensus 417 ~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 417 EAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 88888888888888777763 222 112244577788888888888888888877763
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.7e-08 Score=92.70 Aligned_cols=315 Identities=12% Similarity=0.102 Sum_probs=189.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhc
Q 047305 313 VMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTF-TILICGMCRN 391 (767)
Q Consensus 313 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~ 391 (767)
-+...+...|++..|+.-|...++.++. +-.++..-...|...|+...|..-+..+++.. ||...- -.-...+.+.
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK--pDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLELK--PDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhcC--ccHHHHHHHhchhhhhc
Confidence 3445555666666666666666654211 22222223345556666666666666655543 332221 1223345566
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHH
Q 047305 392 GMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQY 471 (767)
Q Consensus 392 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 471 (767)
|.++.|..-|+...+.. |+..+ ...++.+....++-..+ ...+..+
T Consensus 120 Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~~~l-----------------------------~~ql~s~ 165 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEHWVL-----------------------------VQQLKSA 165 (504)
T ss_pred ccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHHHHH-----------------------------HHHHHHH
Confidence 77777777777766653 22111 11122222112221111 1223345
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 047305 472 CTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAF 551 (767)
Q Consensus 472 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~ 551 (767)
...|+...|+.....+++.. +.+...+..-..+|...|.+..|+.-++...+.. ..+..++..+...+...|+.+.++
T Consensus 166 ~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL 243 (504)
T KOG0624|consen 166 SGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSL 243 (504)
T ss_pred hcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHH
Confidence 55677777777777777653 2366666667777777777777777776666543 224445555556666777777777
Q ss_pred HHHHHhhhCCCCCCHh----hHHHH---------HHHHHhcCChhHHHHHHHHHHhccCCCccchH----HHHHHHHhcC
Q 047305 552 RIFGQMPQNGCTPSPA----VYKSL---------MTWSCRRRKFSLAFSLWLQYLRDISGRDDESM----KSIEEFLQKG 614 (767)
Q Consensus 552 ~~~~~~~~~~~~~~~~----~~~~l---------~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~----~l~~~~~~~g 614 (767)
..+++.++. .|+.. .|..+ +......++|-++.+..++.++..|..+.+.+ .+..++..-|
T Consensus 244 ~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~ 321 (504)
T KOG0624|consen 244 KEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDE 321 (504)
T ss_pred HHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccC
Confidence 777777763 44422 22211 11244668888888888999988888665544 3456677788
Q ss_pred CHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCh
Q 047305 615 EVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTP 670 (767)
Q Consensus 615 ~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 670 (767)
++.+|+..-.++. ..+|++..++...+.+|.-...|+.|+.-|+++.+.+ +.+.
T Consensus 322 ~~~eAiqqC~evL-~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n-~sn~ 375 (504)
T KOG0624|consen 322 QFGEAIQQCKEVL-DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN-ESNT 375 (504)
T ss_pred CHHHHHHHHHHHH-hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC-cccH
Confidence 8889988877732 2468888889999999999999999999999998887 4443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.5e-09 Score=101.38 Aligned_cols=414 Identities=15% Similarity=0.093 Sum_probs=277.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 047305 280 IDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPD-TYCYNALIKGFCDLGL 358 (767)
Q Consensus 280 i~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~ 358 (767)
..+.+..|+++.|..+|-+.+...+. +.+.|+.-..+|.+.|++++|++--.+-++. .|+ ...|.....++.-.|+
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 35667899999999999999988766 8899999999999999999999877777665 444 6789999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHc------
Q 047305 359 LDQARSLQVEIWKRDSLPNTHTFTILICGMCRNG---MVDDAQKLFNKMEKA---GCFPSVGMFNALIDGLCKA------ 426 (767)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~------ 426 (767)
+++|...|.+-++..+ .+...++.+..++.... +.-.--.++..+... ........|..++..+.+.
T Consensus 86 ~~eA~~ay~~GL~~d~-~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDP-SNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHHHHhhcCC-chHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 9999999999988875 67778888888772110 000000111111100 0000111222333222111
Q ss_pred ----CCHHHHHHHHHHhhc-------------CCCchhhhhhccCCCCcc----------hHHHHHHHHHHHHhcCCHHH
Q 047305 427 ----GELEKANLLFYKMEI-------------GKNPTLFLRLSQGGNRVH----------DKASLQTMVEQYCTAGLIHK 479 (767)
Q Consensus 427 ----~~~~~A~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~ 479 (767)
.+...+.-.+..... ...|. + .-........ -......++....+..+++.
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~-~-~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPC-K-QEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcc-c-ccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 111111111111100 00110 0 0000000000 11223456677777888899
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH-------HHHHHHhcCCHHHHHH
Q 047305 480 AYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGT-------LINGLQRVDREEDAFR 552 (767)
Q Consensus 480 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~-------l~~~~~~~~~~~~A~~ 552 (767)
|.+-+....+.. .+..-++....+|...|.+.+....-....+.|.. ...-|+. +..+|.+.++++.|+.
T Consensus 243 a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~ 319 (539)
T KOG0548|consen 243 AIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIK 319 (539)
T ss_pred HHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHH
Confidence 999998888764 35555666778888888888888877777666532 2222333 3345666788899999
Q ss_pred HHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 047305 553 IFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLND 632 (767)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p 632 (767)
+|.+.+..--.|+ ...+....+++....+...-.+|.-....-..+..+++.|++..|+..+.+.. +.+|
T Consensus 320 ~~~kaLte~Rt~~---------~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAI-kr~P 389 (539)
T KOG0548|consen 320 YYQKALTEHRTPD---------LLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAI-KRDP 389 (539)
T ss_pred HHHHHhhhhcCHH---------HHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH-hcCC
Confidence 9998765322222 23345566777777666666666666666667999999999999999999943 3469
Q ss_pred CCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHH
Q 047305 633 FQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRV-CNYL 711 (767)
Q Consensus 633 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l 711 (767)
+++..|.+.+.+|.+.|.+..|+.-.++.++.+ |+....|..-+.++....+|++|.+.|+++++.+ |+..- ...+
T Consensus 390 ~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~~~~~ 466 (539)
T KOG0548|consen 390 EDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEAIDGY 466 (539)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHHHHHH
Confidence 999999999999999999999999999999998 8888899999999999999999999999998865 65443 3334
Q ss_pred HHHH
Q 047305 712 LRSL 715 (767)
Q Consensus 712 ~~~l 715 (767)
..+.
T Consensus 467 ~rc~ 470 (539)
T KOG0548|consen 467 RRCV 470 (539)
T ss_pred HHHH
Confidence 4443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.4e-10 Score=95.63 Aligned_cols=161 Identities=13% Similarity=0.019 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 047305 463 SLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQ 542 (767)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 542 (767)
....+.-.|...|+...|..-++++++..+. +..+|..+...|.+.|..+.|.+.|++....... +..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 4445555556666666666666666555321 3445555555566666666666666665554322 3345555555555
Q ss_pred hcCCHHHHHHHHHHhhhCCC-CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHH
Q 047305 543 RVDREEDAFRIFGQMPQNGC-TPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQ 621 (767)
Q Consensus 543 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 621 (767)
..|++++|...|+++...-. .....+|..++-+..+.|+.+.|.+.|++.++.+|+.+.+...++......|++-.|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 55666666666665554311 11234555555555555666666666666655555555555555555555555555544
Q ss_pred HHHH
Q 047305 622 GLLE 625 (767)
Q Consensus 622 ~~~~ 625 (767)
.+..
T Consensus 195 ~~~~ 198 (250)
T COG3063 195 YLER 198 (250)
T ss_pred HHHH
Confidence 4333
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.4e-10 Score=112.86 Aligned_cols=247 Identities=17% Similarity=0.086 Sum_probs=146.2
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC
Q 047305 460 DKASLQTMVEQYCTAGLIHKAYKILMQLAES-----G-NLPDII-TYNSLINGFCKVGNINGALKLFKELQLK-----GL 527 (767)
Q Consensus 460 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~ 527 (767)
-..+...+...|...|+++.|..+++...+. | ..|.+. ..+.+...|...+++.+|..+|+++... |-
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3345555777788888888888887766543 1 011221 2233455566666666666666666532 11
Q ss_pred -CCC-hhhHHHHHHHHHhcCCHHHHHHHHHHhhhC-----CC-CCC-HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCC
Q 047305 528 -RPD-SVTYGTLINGLQRVDREEDAFRIFGQMPQN-----GC-TPS-PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISG 598 (767)
Q Consensus 528 -~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 598 (767)
.|. ..+++.|..+|.+.|++++|..+++++.+. +. .|. ...+..++..+...+++++|..++.+.+
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al----- 352 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKAL----- 352 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH-----
Confidence 111 124555555666666666666555555431 11 111 1123333444555555555555554443
Q ss_pred CccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHc----CCCCC---hH
Q 047305 599 RDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVEC----KAIVT---PP 671 (767)
Q Consensus 599 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~---~~ 671 (767)
+++...-...+|..+..+..|++.|.+.|++++|.+++++++.. +-..+ ..
T Consensus 353 ----------------------~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~ 410 (508)
T KOG1840|consen 353 ----------------------KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGK 410 (508)
T ss_pred ----------------------HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhH
Confidence 22222111122334567999999999999999999999998632 11222 34
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHH--CCCCCCHHHH---HHHHHHHhhcCCccHHHHHHHHHHHH
Q 047305 672 SCVKLIHGLCKRGYLDLAMDVFLYTLK--NGFILRPRVC---NYLLRSLLFSKDNKKVHAYHLLCRMK 734 (767)
Q Consensus 672 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~---~~l~~~l~~~~~~~~~~a~~~~~~~~ 734 (767)
.++.++..|...+++.+|..+|.+... ....|+.+.. ...+..++...|+ ++.|.++.++..
T Consensus 411 ~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~-~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 411 PLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGN-YEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHccc-HHHHHHHHHHHH
Confidence 688899999999999999999987743 2334554322 2245555558998 999999988866
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=9.1e-07 Score=90.97 Aligned_cols=169 Identities=16% Similarity=0.087 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047305 239 VAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGL 318 (767)
Q Consensus 239 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 318 (767)
..|......+-..|+.+.|+.++..... |-++++..|-.|+.++|-++-++-- |......+.+.|
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~Y 977 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMY 977 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHh
Confidence 3444444445567777777777766543 4456677777888888877665432 666667788888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHhCCCCCCHHHHHH
Q 047305 319 SEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLG---------------LLDQARSLQVEIWKRDSLPNTHTFTI 383 (767)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------------~~~~a~~~~~~~~~~~~~~~~~~~~~ 383 (767)
-..|++.+|..+|.+... +...|+.|-.++ +.-.|.+.|++. |. -+..
T Consensus 978 En~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~-----~~~~ 1040 (1416)
T KOG3617|consen 978 ENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GG-----YAHK 1040 (1416)
T ss_pred hhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---ch-----hhhH
Confidence 888888888888876543 222333322221 222222333322 11 1222
Q ss_pred HHHHHHhcCCHHHHHHHHHHH--------H--HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 047305 384 LICGMCRNGMVDDAQKLFNKM--------E--KAGCFPSVGMFNALIDGLCKAGELEKANLLFYKM 439 (767)
Q Consensus 384 l~~~~~~~g~~~~A~~~~~~~--------~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 439 (767)
.+..|-+.|.+.+|+++--.- + +.....|+...+...+.++...++++|..++...
T Consensus 1041 AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~a 1106 (1416)
T KOG3617|consen 1041 AVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLA 1106 (1416)
T ss_pred HHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344566777777776653221 1 1223346777777777888888888887776554
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.23 E-value=6e-08 Score=89.28 Aligned_cols=233 Identities=8% Similarity=-0.051 Sum_probs=168.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCC------------H--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 047305 468 VEQYCTAGLIHKAYKILMQLAESGNLPD------------I--ITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVT 533 (767)
Q Consensus 468 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~------------~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 533 (767)
...+.++|.++.|..=|+.+++..+..+ . ......+..+...|+...|+.....+++..+ .|...
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~l 191 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDASL 191 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chhHH
Confidence 3345555555555555555555432111 0 1122334455678999999999999998743 36677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchH---------
Q 047305 534 YGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESM--------- 604 (767)
Q Consensus 534 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~--------- 604 (767)
+..-..+|...|++..|+.-++...+.. ..+...+..+...+...|+.+.++...+++++.+|+.-..+-
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~ 270 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVV 270 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHH
Confidence 7788899999999999999888887754 345556666778888999999999999999999998765432
Q ss_pred ---HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCc----cchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHH
Q 047305 605 ---KSIEEFLQKGEVENAIQGLLEMDFKLNDFQL----APYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLI 677 (767)
Q Consensus 605 ---~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 677 (767)
.-+....+.+++.++++.-+++-. .+|..+ ..+..+-.++...|++.+|+....++++.. |.|..++.--+
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk-~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRA 348 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLK-NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRA 348 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHh-cCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHH
Confidence 113344567888888887777321 235422 234455566777799999999999999987 77789999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 047305 678 HGLCKRGYLDLAMDVFLYTLKNGFILRPR 706 (767)
Q Consensus 678 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 706 (767)
.+|.....++.|+.-|+++.+.+ +++.
T Consensus 349 eA~l~dE~YD~AI~dye~A~e~n--~sn~ 375 (504)
T KOG0624|consen 349 EAYLGDEMYDDAIHDYEKALELN--ESNT 375 (504)
T ss_pred HHHhhhHHHHHHHHHHHHHHhcC--cccH
Confidence 99999999999999999998744 5554
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.5e-09 Score=103.81 Aligned_cols=223 Identities=15% Similarity=0.051 Sum_probs=161.6
Q ss_pred HHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhH
Q 047305 420 IDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITY 499 (767)
Q Consensus 420 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 499 (767)
..-+.+.|+..+|.-.|+... ...|.+..+|..|+......++-..|+..+++..+..+. |....
T Consensus 292 G~~lm~nG~L~~A~LafEAAV--------------kqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaL 356 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAV--------------KQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEAL 356 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHH--------------hhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHH
Confidence 334677888888888888876 445677888888888888888888888888888877533 67777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH-----------HHHHhcCCHHHHHHHHHHh-hhCCCCCCHh
Q 047305 500 NSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLI-----------NGLQRVDREEDAFRIFGQM-PQNGCTPSPA 567 (767)
Q Consensus 500 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~-----------~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~ 567 (767)
..|.-.|...|.-..|+..++.-+...++ . ..+. ..+..........++|-++ ...+..+|+.
T Consensus 357 maLAVSytNeg~q~~Al~~L~~Wi~~~p~--y---~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~Dpd 431 (579)
T KOG1125|consen 357 MALAVSYTNEGLQNQALKMLDKWIRNKPK--Y---VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPD 431 (579)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCcc--c---hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChh
Confidence 78888888888888888888887654211 1 0000 0111112223334444444 3344457777
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHH-hhhcCCCCCccchHHHHHHHh
Q 047305 568 VYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLE-MDFKLNDFQLAPYTIWLIGLC 646 (767)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~p~~~~~~~~l~~~~~ 646 (767)
+...|.-.|.-.|++++|+..|+.++...|+|...|+.++..+....+.++|++.+.+ +.. .|.-..+..+|+..|.
T Consensus 432 vQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~m 509 (579)
T KOG1125|consen 432 VQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCM 509 (579)
T ss_pred HHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhh
Confidence 8888888888888888888888888888888888888888888888888888888888 443 4888888888888888
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 047305 647 QDGQVKEALNIFSVLVEC 664 (767)
Q Consensus 647 ~~g~~~~A~~~~~~~~~~ 664 (767)
..|.|++|.+.|-+++..
T Consensus 510 NlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 510 NLGAYKEAVKHLLEALSM 527 (579)
T ss_pred hhhhHHHHHHHHHHHHHh
Confidence 888888888888877643
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.9e-08 Score=97.95 Aligned_cols=212 Identities=6% Similarity=0.009 Sum_probs=154.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 047305 466 TMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVG-NINGALKLFKELQLKGLRPDSVTYGTLINGLQRV 544 (767)
Q Consensus 466 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 544 (767)
.+-..+...+..++|+....++++..+. +..+|+....++...| ++++++..++++.....+ +..+|+.....+.+.
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l 119 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHc
Confidence 3334455677888999999988877432 5567777666777777 578999999998877544 555677666666666
Q ss_pred CCH--HHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhc---CCH---
Q 047305 545 DRE--EDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQK---GEV--- 616 (767)
Q Consensus 545 ~~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~--- 616 (767)
|+. ++++.+++++++.+ +.+..+|....-++...|+++++++.++++++.+|.+..+++..+.+.... |..
T Consensus 120 ~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 120 GPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred CchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccccc
Confidence 653 67788888888754 456677777777778888899999999999999999999998888777655 323
Q ss_pred -HHHHHHHHHhhhcCCCCCccchHHHHHHHhhc----CCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 047305 617 -ENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQD----GQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCK 682 (767)
Q Consensus 617 -~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 682 (767)
++++....+. ....|++..+|+.++.++... ++..+|.+.+.++.+.+ +.++.++..|+++|+.
T Consensus 199 ~e~el~y~~~a-I~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 199 RDSELKYTIDA-ILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHH-HHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 2344444332 234688888898888888873 45677888888887765 6777788888888875
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.9e-07 Score=95.52 Aligned_cols=201 Identities=9% Similarity=-0.007 Sum_probs=112.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCCH--hhHHHHHH
Q 047305 498 TYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGC-TPSP--AVYKSLMT 574 (767)
Q Consensus 498 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~--~~~~~l~~ 574 (767)
....+...+...|++++|...+++..+.... +...+..+..++...|++++|..++++..+... .++. ..|..+..
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~ 194 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL 194 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence 3344455666777777777777777765322 344556666777777777777777777665321 1221 23445666
Q ss_pred HHHhcCChhHHHHHHHHHHhccCCCccch-H----HHHHHHHhcCCHHHHHHH--HHHhhhcCCCCCc--cchHHHHHHH
Q 047305 575 WSCRRRKFSLAFSLWLQYLRDISGRDDES-M----KSIEEFLQKGEVENAIQG--LLEMDFKLNDFQL--APYTIWLIGL 645 (767)
Q Consensus 575 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~-~----~l~~~~~~~g~~~~A~~~--~~~~~~~~~p~~~--~~~~~l~~~~ 645 (767)
.+...|++++|..+|++++...|...... . .+...+...|....+... +........|... ......+.++
T Consensus 195 ~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~ 274 (355)
T cd05804 195 FYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALAL 274 (355)
T ss_pred HHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 67777777777777777764444211111 0 122223333432222111 1111111111111 1123566677
Q ss_pred hhcCCHHHHHHHHHHHHHcCCC--------CChHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047305 646 CQDGQVKEALNIFSVLVECKAI--------VTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 646 ~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 699 (767)
...|+.++|...++.+...... .........+.++...|++++|.+.+..++..
T Consensus 275 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 275 AGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred hcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7788888888888887653211 12334455666777888999998888887653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.8e-09 Score=103.61 Aligned_cols=226 Identities=10% Similarity=0.028 Sum_probs=180.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 047305 467 MVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDR 546 (767)
Q Consensus 467 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 546 (767)
.+..+.+.|++.+|.-.|+...+..+. +...|..|.......++-..|+..+++..+.... |...+..|.-.|...|.
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhh
Confidence 345577889999999999999887533 7889999999999999999999999999987433 56788888899999999
Q ss_pred HHHHHHHHHHhhhCCCCCC-------HhhHHHHHHHHHhcCChhHHHHHHHHHHhccC--CCccchHHHHHHHHhcCCHH
Q 047305 547 EEDAFRIFGQMPQNGCTPS-------PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDIS--GRDDESMKSIEEFLQKGEVE 617 (767)
Q Consensus 547 ~~~A~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~g~~~ 617 (767)
-.+|...++.-+...++-- ...+.. -..+.....+....++|-++....| .++++...++-.|.-.|+++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~-~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFEN-TKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccC-CcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 9999999998765321000 000000 0111222334556677778888888 89999999999999999999
Q ss_pred HHHHHHHH-hhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC-hHhHHHHHHHHHhcCChhHHHHHHHH
Q 047305 618 NAIQGLLE-MDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVT-PPSCVKLIHGLCKRGYLDLAMDVFLY 695 (767)
Q Consensus 618 ~A~~~~~~-~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 695 (767)
+|+..|.. +. ..|.+...|+.||.+++...+.++|+..|.++++.. |. .-++..|+-.|...|.+++|.++|-.
T Consensus 448 raiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--P~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 448 RAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ--PGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--CCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 99999998 44 459999999999999999999999999999999874 54 44777899999999999999999998
Q ss_pred HHHC
Q 047305 696 TLKN 699 (767)
Q Consensus 696 ~~~~ 699 (767)
++..
T Consensus 524 AL~m 527 (579)
T KOG1125|consen 524 ALSM 527 (579)
T ss_pred HHHh
Confidence 8764
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.9e-08 Score=89.41 Aligned_cols=84 Identities=10% Similarity=-0.034 Sum_probs=38.9
Q ss_pred HHhcCCHHHHHHHHHHHHHc-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 047305 471 YCTAGLIHKAYKILMQLAES-GNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREED 549 (767)
Q Consensus 471 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 549 (767)
+.+.|+++.|.+.+..|.-. ....|++|...+.-. -..+++.+..+-+.-+...+. ....||-.++-.|++..-++-
T Consensus 251 eyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~l 328 (459)
T KOG4340|consen 251 EYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDL 328 (459)
T ss_pred hhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhH
Confidence 34455555555555544211 112344444433221 123334444444444443332 234466666666666666666
Q ss_pred HHHHHHH
Q 047305 550 AFRIFGQ 556 (767)
Q Consensus 550 A~~~~~~ 556 (767)
|-.++.+
T Consensus 329 AADvLAE 335 (459)
T KOG4340|consen 329 AADVLAE 335 (459)
T ss_pred HHHHHhh
Confidence 6655543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.6e-10 Score=77.94 Aligned_cols=49 Identities=45% Similarity=0.893 Sum_probs=25.4
Q ss_pred CChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047305 201 PNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFC 249 (767)
Q Consensus 201 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 249 (767)
||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4455555555555555555555555555555555555555555555544
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.4e-09 Score=107.34 Aligned_cols=223 Identities=14% Similarity=0.075 Sum_probs=190.4
Q ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 047305 456 NRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYG 535 (767)
Q Consensus 456 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 535 (767)
..++-...-..+...+...|-...|..+|+++. .|...+.+|...|+..+|..+..+-.+. +|++..|.
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc 461 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYC 461 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHH
Confidence 344555566778899999999999999998764 5777889999999999999998888874 78999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCC
Q 047305 536 TLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGE 615 (767)
Q Consensus 536 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 615 (767)
.+.++.....-+++|.++.+..... .-..+.......++++++...|+..++.+|-...+|+..+.++.+.++
T Consensus 462 ~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 462 LLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred HhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhh
Confidence 9988887777788888888765432 222333334457999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-hhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHH
Q 047305 616 VENAIQGLLE-MDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFL 694 (767)
Q Consensus 616 ~~~A~~~~~~-~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 694 (767)
++.|.+.|.. +. .+|++..+|+++..+|.+.|+..+|...++++.+.+ -.+..+|....-...+.|.+++|++.++
T Consensus 535 ~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~ 611 (777)
T KOG1128|consen 535 EQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYH 611 (777)
T ss_pred hHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHH
Confidence 9999999988 44 469999999999999999999999999999999998 7778888888888999999999999999
Q ss_pred HHHHC
Q 047305 695 YTLKN 699 (767)
Q Consensus 695 ~~~~~ 699 (767)
++...
T Consensus 612 rll~~ 616 (777)
T KOG1128|consen 612 RLLDL 616 (777)
T ss_pred HHHHh
Confidence 98764
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.3e-10 Score=77.23 Aligned_cols=49 Identities=51% Similarity=1.004 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 047305 166 PNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLC 214 (767)
Q Consensus 166 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 214 (767)
||..+||+++++|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4455555555555555555555555555555555555555555555544
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.1e-07 Score=82.96 Aligned_cols=349 Identities=15% Similarity=0.116 Sum_probs=205.3
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHH-HHHHH
Q 047305 66 NSAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAV-LNIAF 144 (767)
Q Consensus 66 ~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-l~~~~ 144 (767)
+..++..+.+..++..+.+++..-.+.. +.+......+..+|....++..|-+.|+++... .|...-|... ...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 4455566677788888888887766654 345667777788888888888888888877653 3544444332 34556
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHH
Q 047305 145 RKQLFLLALAVYYEMVKLNCLPNIVTFSLLING--LSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEA 222 (767)
Q Consensus 145 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 222 (767)
+.+.+..|..+...|... ++...-..-+.+ ....+++..+..+.++....| +..+.+...-...+.|+++.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 677788888887776542 332222222222 234577778888888776543 444555555556677888888
Q ss_pred HHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccH----HHHHHHHHhcCCHHHHHHHHH
Q 047305 223 YRLFLKMKDS-GCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSY----SCLIDGLFRAKRYDEAYAWYR 297 (767)
Q Consensus 223 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~li~~~~~~~~~~~A~~~~~ 297 (767)
.+-|+...+- |.. ....|+.-+. ..+.++++.|.+...+++++|+...+..- ...++.- .+..-..+..
T Consensus 164 vqkFqaAlqvsGyq-pllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr----svgNt~~lh~ 237 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQ-PLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR----SVGNTLVLHQ 237 (459)
T ss_pred HHHHHHHHhhcCCC-chhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh----cccchHHHHH
Confidence 8888877664 444 3556664443 34667888888888888877754322111 0001100 0000000000
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 047305 298 KMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRER-GIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLP 376 (767)
Q Consensus 298 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 376 (767)
.. -...+|.-...+.+.|+++.|.+.+.+|.-+ ....|+.|...+.-.- ..+++....+-+.-++..++ .
T Consensus 238 Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-f 308 (459)
T KOG4340|consen 238 SA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-F 308 (459)
T ss_pred HH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-C
Confidence 00 1223455555667889999999988888644 2345667766654332 23455555555666666665 4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHH-HcCCHHHHHHHHHHh
Q 047305 377 NTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCF-PSVGMFNALIDGLC-KAGELEKANLLFYKM 439 (767)
Q Consensus 377 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~ 439 (767)
...||..++-.||++.-++.|-.++.+-...-.. .+...|+ +++++. ..-..++|.+-+..+
T Consensus 309 P~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 309 PPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred ChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHH
Confidence 5678888888999998888888877653221111 1233333 333333 334566666655544
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.4e-08 Score=96.63 Aligned_cols=185 Identities=16% Similarity=0.088 Sum_probs=125.6
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-CC-Hhh
Q 047305 495 DIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDS----VTYGTLINGLQRVDREEDAFRIFGQMPQNGCT-PS-PAV 568 (767)
Q Consensus 495 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~-~~~ 568 (767)
....+..++..+...|++++|...++++... .|+. .++..+..++...|++++|...++++++.... +. ..+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 4556667777788888888888888888765 3332 35667777888888888888888888764311 11 113
Q ss_pred HHHHHHHHHhc--------CChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHH
Q 047305 569 YKSLMTWSCRR--------RKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTI 640 (767)
Q Consensus 569 ~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~ 640 (767)
+..+..++.+. |++++|.+.|+++++..|.+......+....... .. .. .....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~----~~------~~--------~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLR----NR------LA--------GKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH----HH------HH--------HHHHH
Confidence 44555555544 6788888888888888887765543222211100 00 00 11346
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHcCC--CCChHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047305 641 WLIGLCQDGQVKEALNIFSVLVECKA--IVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 641 l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 699 (767)
++..|.+.|++++|+..++++++... +..+..+..++.++...|++++|..+++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77888999999999999999987641 223578889999999999999999988877543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.6e-08 Score=94.15 Aligned_cols=211 Identities=9% Similarity=-0.065 Sum_probs=161.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHh
Q 047305 500 NSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVD-REEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCR 578 (767)
Q Consensus 500 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 578 (767)
..+-..+...++.++|+.+..+++..... +..+|+.-..++...| ++++++..++++++.+ +.+..+|..-..++.+
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~ 118 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEK 118 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHH
Confidence 33444455678899999999999987322 3446666666777777 6799999999998864 4455566655555666
Q ss_pred cCCh--hHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhc---CCH--
Q 047305 579 RRKF--SLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQD---GQV-- 651 (767)
Q Consensus 579 ~g~~--~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~-- 651 (767)
.|+. +++.++++++++.+|.+..++...+.++...|+++++++.+.++-. .+|.+..+|+..+.++.+. |.+
T Consensus 119 l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~-~d~~N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLE-EDVRNNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred cCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HCCCchhHHHHHHHHHHhccccccccc
Confidence 6663 7889999999999999999999999999999999999999988532 4688999999999988765 333
Q ss_pred --HHHHHHHHHHHHcCCCCChHhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHh
Q 047305 652 --KEALNIFSVLVECKAIVTPPSCVKLIHGLCK----RGYLDLAMDVFLYTLKNGFILRPRV-CNYLLRSLL 716 (767)
Q Consensus 652 --~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~l~ 716 (767)
++++++..+++..+ |.+..+|+.++.++.. .++..+|.+.+.+++.. .|++.. ...++..+.
T Consensus 198 ~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~--~~~s~~al~~l~d~~~ 266 (320)
T PLN02789 198 MRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK--DSNHVFALSDLLDLLC 266 (320)
T ss_pred cHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc--cCCcHHHHHHHHHHHH
Confidence 57888998999987 8899999999999988 34567799998888764 355444 333555544
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.07 E-value=6e-07 Score=91.89 Aligned_cols=307 Identities=14% Similarity=0.004 Sum_probs=187.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 047305 413 VGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGN 492 (767)
Q Consensus 413 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 492 (767)
...+..+...+...|+.+.+...+.+...... ...............+...|++++|...+++..+..+
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P 74 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALA-----------ARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP 74 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhc-----------cCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 34555566666667777777666665532111 0111223333445567788999999999999987743
Q ss_pred CCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHh
Q 047305 493 LPDIITYNSLINGFCK----VGNINGALKLFKELQLKGLRPDS-VTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPA 567 (767)
Q Consensus 493 ~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 567 (767)
.+...+.. ...+.. .+....+.+.+.. .....|+. .....+...+...|++++|...+++..+.. +.+..
T Consensus 75 -~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~ 149 (355)
T cd05804 75 -RDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAW 149 (355)
T ss_pred -CcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcH
Confidence 24444442 222333 3445555555544 11223333 344456678899999999999999999864 44566
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccc----hHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccc--h-H-
Q 047305 568 VYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDE----SMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAP--Y-T- 639 (767)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~--~-~- 639 (767)
.+..+..++...|++++|...+++.++..|.++.. ++.++..+...|++++|+..+.+.... .|..... . .
T Consensus 150 ~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~-~~~~~~~~~~~~~ 228 (355)
T cd05804 150 AVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP-SAESDPALDLLDA 228 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-ccCCChHHHHhhH
Confidence 78888899999999999999999999887755433 446889999999999999999885321 2311110 1 1
Q ss_pred -HHHHHHhhcCCHHHHHHH--H-HHHHHcCC-CCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--C----HHHH
Q 047305 640 -IWLIGLCQDGQVKEALNI--F-SVLVECKA-IVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFIL--R----PRVC 708 (767)
Q Consensus 640 -~l~~~~~~~g~~~~A~~~--~-~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~----~~~~ 708 (767)
.+.+.+...|..+.+..+ + ........ +.......+.+.++...|+.++|...++.+......+ . ..+.
T Consensus 229 ~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~ 308 (355)
T cd05804 229 ASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVG 308 (355)
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhh
Confidence 223334444543333333 1 11111100 1122333467778889999999999999886532210 1 1122
Q ss_pred HHHHHH-HhhcCCccHHHHHHHHHHHHHcC
Q 047305 709 NYLLRS-LLFSKDNKKVHAYHLLCRMKSVG 737 (767)
Q Consensus 709 ~~l~~~-l~~~~~~~~~~a~~~~~~~~~~~ 737 (767)
..++.+ .....|+ +++|..++......+
T Consensus 309 ~~~l~A~~~~~~g~-~~~A~~~L~~al~~a 337 (355)
T cd05804 309 LPLAEALYAFAEGN-YATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHHH
Confidence 223333 3336777 999999998877543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.6e-08 Score=91.63 Aligned_cols=119 Identities=12% Similarity=0.086 Sum_probs=86.8
Q ss_pred cCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHH-hhcCC--HHHHH
Q 047305 579 RRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGL-CQDGQ--VKEAL 655 (767)
Q Consensus 579 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~--~~~A~ 655 (767)
.++.+++...+++.++.+|++...|..++..|...|++++|+..+.+.. ...|+++..+..++.++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al-~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQAL-QLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 5566777777777777777777777777777777777777777777632 23477777777777764 55565 47788
Q ss_pred HHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047305 656 NIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 699 (767)
++++++++.+ |.++.++..++.++...|++++|+..|+++++.
T Consensus 131 ~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 131 EMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 8888887776 667777777777788888888888888877764
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1e-05 Score=83.58 Aligned_cols=336 Identities=15% Similarity=0.154 Sum_probs=199.3
Q ss_pred HhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 047305 109 YKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAI 188 (767)
Q Consensus 109 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 188 (767)
...|..++|+.+|++-.+. ..|=..|-..|.+++|.++-+.--+..+ ..+|-.-..-+-..++.+.|+
T Consensus 811 ieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHH
Confidence 3568888888888877653 3444556667888888887665433222 234444444455567777777
Q ss_pred HHHHHHHH----------CCC---------CCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047305 189 KMLDEMTQ----------RGI---------LPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFC 249 (767)
Q Consensus 189 ~~~~~~~~----------~~~---------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 249 (767)
+.|++... ..+ ..|...|.....-+-..|+.+.|+.+|....+ |-++++..|
T Consensus 879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C 949 (1416)
T KOG3617|consen 879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKC 949 (1416)
T ss_pred HHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEe
Confidence 77665321 110 11334444455555667888888888877654 445777778
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------
Q 047305 250 KLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEA-------- 321 (767)
Q Consensus 250 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------- 321 (767)
-.|+.++|-++-++- -|....-.|.+.|-..|++.+|...|-+... +...|+.|-.+
T Consensus 950 ~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~n 1014 (1416)
T KOG3617|consen 950 IQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLAN 1014 (1416)
T ss_pred eccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHH
Confidence 889999998887652 2555666788999999999999988876542 22233322222
Q ss_pred -------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--------HHhC--CCCCCHHHHHHH
Q 047305 322 -------GKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVE--------IWKR--DSLPNTHTFTIL 384 (767)
Q Consensus 322 -------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~--------~~~~--~~~~~~~~~~~l 384 (767)
.+.-.|-++|++.- . -+...+..|.+.|.+.+|.++--+ ++.. +...|+...+.-
T Consensus 1015 lal~s~~~d~v~aArYyEe~g---~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rc 1086 (1416)
T KOG3617|consen 1015 LALMSGGSDLVSAARYYEELG---G-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRC 1086 (1416)
T ss_pred HHhhcCchhHHHHHHHHHHcc---h-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHH
Confidence 22333444444321 1 122234556777777777664221 1222 334577778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHH
Q 047305 385 ICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASL 464 (767)
Q Consensus 385 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (767)
.+.++...++++|..++-...+. ...+. +|...+..-..+.-+.|...+.. . .+......++
T Consensus 1087 adFF~~~~qyekAV~lL~~ar~~---------~~Alq-lC~~~nv~vtee~aE~mTp~Kd~-~-------~~e~~R~~vL 1148 (1416)
T KOG3617|consen 1087 ADFFENNQQYEKAVNLLCLAREF---------SGALQ-LCKNRNVRVTEEFAELMTPTKDD-M-------PNEQERKQVL 1148 (1416)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHH---------HHHHH-HHhcCCCchhHHHHHhcCcCcCC-C-------ccHHHHHHHH
Confidence 88888888888888887766542 22222 23333333333333334211110 0 0111234567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHH
Q 047305 465 QTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGA 515 (767)
Q Consensus 465 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 515 (767)
..+.+.+.++|.+..|.+-|.++-++ ...++++.+.|+.++.
T Consensus 1149 eqvae~c~qQG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~KI 1190 (1416)
T KOG3617|consen 1149 EQVAELCLQQGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQKI 1190 (1416)
T ss_pred HHHHHHHHhccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcceE
Confidence 78889999999999998888776432 1345667777876653
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.3e-08 Score=88.36 Aligned_cols=158 Identities=11% Similarity=0.030 Sum_probs=134.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcC
Q 047305 535 GTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKG 614 (767)
Q Consensus 535 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 614 (767)
..+...+...|+-+.+..+....... .+.+.......+....+.|++.+|+..+.++....|++...++.++.+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 66677788888888888888776542 34566677778888899999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHH-hhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHH
Q 047305 615 EVENAIQGLLE-MDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVF 693 (767)
Q Consensus 615 ~~~~A~~~~~~-~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 693 (767)
+++.|...+.+ ++ ..|.++.++++++..|.-.|+++.|..++..+.... +.|+.+...++.+....|++++|..+.
T Consensus 149 r~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 99999888777 44 458889999999999999999999999999998775 667888888999999999999999876
Q ss_pred HHH
Q 047305 694 LYT 696 (767)
Q Consensus 694 ~~~ 696 (767)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.6e-08 Score=106.96 Aligned_cols=143 Identities=12% Similarity=-0.003 Sum_probs=121.8
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHH
Q 047305 562 CTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIW 641 (767)
Q Consensus 562 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l 641 (767)
...+...+..|..+..+.|.+++|..+++.+++..|++..+...++.++.+.+++++|+..+.+... ..|+++..+..+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~-~~p~~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS-GGSSSAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh-cCCCCHHHHHHH
Confidence 4566888888999999999999999999999999999999999999999999999999888888432 469999999999
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 047305 642 LIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRV 707 (767)
Q Consensus 642 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 707 (767)
+.++.+.|++++|.++|+++...+ +.++.++..++.++...|+.++|...|++++.. ..|-...
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~ 224 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARK 224 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHH
Confidence 999999999999999999998865 677889999999999999999999999999864 2344443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.7e-09 Score=89.36 Aligned_cols=115 Identities=13% Similarity=0.009 Sum_probs=74.7
Q ss_pred HHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCC
Q 047305 587 SLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKA 666 (767)
Q Consensus 587 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 666 (767)
.+|+++++.+|.+ +..++..+...|++++|+..+.... ..+|.+..+|..++.++...|++++|+..|+++.+.+
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al-~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~- 88 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLV-MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD- 88 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 4455556555553 4455666666777777666666632 2346666667777777777777777777777777765
Q ss_pred CCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 047305 667 IVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVC 708 (767)
Q Consensus 667 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 708 (767)
|.++..+..++.++...|++++|+..|+++++.. |+...+
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~--p~~~~~ 128 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS--YADASW 128 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHH
Confidence 6667777777777777777777777777776633 554433
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.1e-07 Score=83.96 Aligned_cols=187 Identities=14% Similarity=0.119 Sum_probs=98.7
Q ss_pred CCHHHHHHHHHHHHHc---C-CCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhcCCHH
Q 047305 475 GLIHKAYKILMQLAES---G-NLPDII-TYNSLINGFCKVGNINGALKLFKELQLKGLRPDSV-TYGTLINGLQRVDREE 548 (767)
Q Consensus 475 g~~~~A~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~ 548 (767)
.+.++..+++.++... | ..++.. .|..++-+....|+.+.|...++++...- |.+. .-..-+.-+-..|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchh
Confidence 4455555555555321 2 223332 23334444455566666666666665542 3322 2212222234456666
Q ss_pred HHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhh
Q 047305 549 DAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDF 628 (767)
Q Consensus 549 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (767)
+|+++++.+++.+ +.|..++..-+.+....|+.-+|++-+.+.++.++.|..+|..++..|...|++++|.-.++++-.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 6666666666543 444555555555555556666666666666666666666666666666666666666666666322
Q ss_pred cCCCCCccchHHHHHHHhhcC---CHHHHHHHHHHHHHcC
Q 047305 629 KLNDFQLAPYTIWLIGLCQDG---QVKEALNIFSVLVECK 665 (767)
Q Consensus 629 ~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~ 665 (767)
..|.++..+..++.+++-.| +++-|.++|.++++.+
T Consensus 183 -~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 183 -IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred -cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 24555555555665555443 4555666666665554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.6e-08 Score=87.44 Aligned_cols=165 Identities=14% Similarity=0.046 Sum_probs=139.8
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHH
Q 047305 565 SPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIG 644 (767)
Q Consensus 565 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~ 644 (767)
+..+ ..+...+...|+-+.+..+..+.....|.+.......+....+.|++.+|+..+.+... ..|.+..+|+.++.+
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~-l~p~d~~~~~~lgaa 143 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR-LAPTDWEAWNLLGAA 143 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc-cCCCChhhhhHHHHH
Confidence 4444 55667788889999999999998888899988888899999999999999999999643 469999999999999
Q ss_pred HhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHH
Q 047305 645 LCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKV 724 (767)
Q Consensus 645 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 724 (767)
|.+.|+.++|...|.++++.. +.++.+.+.++..|.-.|+++.|+.++..+...+ +....+.+.+.......|+ ++
T Consensus 144 ldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~--~ad~~v~~NLAl~~~~~g~-~~ 219 (257)
T COG5010 144 LDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP--AADSRVRQNLALVVGLQGD-FR 219 (257)
T ss_pred HHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC--CCchHHHHHHHHHHhhcCC-hH
Confidence 999999999999999999996 8889999999999999999999999999997654 4344445555555548888 99
Q ss_pred HHHHHHHHHHH
Q 047305 725 HAYHLLCRMKS 735 (767)
Q Consensus 725 ~a~~~~~~~~~ 735 (767)
+|..+..+-..
T Consensus 220 ~A~~i~~~e~~ 230 (257)
T COG5010 220 EAEDIAVQELL 230 (257)
T ss_pred HHHhhcccccc
Confidence 99988776553
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.00 E-value=6.4e-09 Score=99.86 Aligned_cols=129 Identities=13% Similarity=-0.039 Sum_probs=59.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcC--CHHHHHHHHHHhhhcCCCCCccchHHHHHHH
Q 047305 568 VYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKG--EVENAIQGLLEMDFKLNDFQLAPYTIWLIGL 645 (767)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~ 645 (767)
.....+.+|.+.++++.|.+.++.+.+.+.+...+...-+++....| ++.+|...+.++..+ .+.++..++.++.++
T Consensus 133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~ 211 (290)
T PF04733_consen 133 LLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCH 211 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHH
Confidence 33334444444444444444444444332222222222222222222 344454555554332 233444456666666
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh-hHHHHHHHHHHH
Q 047305 646 CQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYL-DLAMDVFLYTLK 698 (767)
Q Consensus 646 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 698 (767)
...|+|++|.+.++++++.+ +.++.++..++-+....|+. +.+.++++++..
T Consensus 212 l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 212 LQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 66666666666666666555 55566655565555555555 445555555543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.2e-08 Score=93.45 Aligned_cols=184 Identities=10% Similarity=-0.050 Sum_probs=117.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC---HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCcc---chH
Q 047305 531 SVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPS---PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDD---ESM 604 (767)
Q Consensus 531 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~ 604 (767)
...+..++..+...|++++|...++++.... +.+ ...+..++.++.+.|++++|+..|+++++..|+++. +++
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 4456667777778888888888888877642 112 235566777778888888888888888888887776 455
Q ss_pred HHHHHHHhc--------CCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHH
Q 047305 605 KSIEEFLQK--------GEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKL 676 (767)
Q Consensus 605 ~l~~~~~~~--------g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 676 (767)
.++.++... |++++|++.+.+... ..|.+...+..+..... .... . ......+
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~p~~~~~~~a~~~~~~----~~~~-------~-------~~~~~~~ 172 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIR-RYPNSEYAPDAKKRMDY----LRNR-------L-------AGKELYV 172 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHH-HCCCChhHHHHHHHHHH----HHHH-------H-------HHHHHHH
Confidence 666666654 566677666666322 23555433222211110 0000 0 0112367
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCC-CCCH-HHHHHHHHHHhhcCCccHHHHHHHHHHHHHc
Q 047305 677 IHGLCKRGYLDLAMDVFLYTLKNGF-ILRP-RVCNYLLRSLLFSKDNKKVHAYHLLCRMKSV 736 (767)
Q Consensus 677 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~-~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~~ 736 (767)
+..|.+.|++++|+..++++++... .|.. ..+..+...+. ..|+ +++|...++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~-~lg~-~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYL-KLGL-KDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHH-HcCC-HHHHHHHHHHHHhh
Confidence 8889999999999999999987641 1222 33444444444 8888 99999999887754
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.4e-09 Score=88.31 Aligned_cols=125 Identities=12% Similarity=-0.048 Sum_probs=100.3
Q ss_pred HHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcC
Q 047305 551 FRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKL 630 (767)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 630 (767)
..++++.++ ..|+. +......+...|++++|...|+.++...|.+..++..++.++...|++++|+..+.+.. ..
T Consensus 13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al-~l 87 (144)
T PRK15359 13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHAL-ML 87 (144)
T ss_pred HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH-hc
Confidence 355666655 23443 44566777889999999999999999999999999999999999999999988888843 24
Q ss_pred CCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 047305 631 NDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLC 681 (767)
Q Consensus 631 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 681 (767)
+|.++.++..++.++...|++++|+..|+++++.. |.++..+...+.+..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~-p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS-YADASWSEIRQNAQI 137 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 68889999999999999999999999999999887 777777766665544
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.9e-07 Score=82.65 Aligned_cols=190 Identities=17% Similarity=0.105 Sum_probs=157.4
Q ss_pred hcCCHHHHHHHHHHHHH---CC-CCCChh-hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCh
Q 047305 508 KVGNINGALKLFKELQL---KG-LRPDSV-TYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKF 582 (767)
Q Consensus 508 ~~g~~~~A~~~~~~~~~---~~-~~p~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 582 (767)
...+.++.++++.++.. .| ..++.. .|..++-+....|+.+-|...++.+... ++.+..+-..-+..+...|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhch
Confidence 45677888888888774 24 556654 4566777788899999999999998775 455555555555557788999
Q ss_pred hHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHH
Q 047305 583 SLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLV 662 (767)
Q Consensus 583 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 662 (767)
++|+++|+..++.+|.+..++...+.+....|+..+|++.+.+... ..+.+..+|.-++.+|...|++++|.-.+++++
T Consensus 103 ~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~-~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLD-KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 9999999999999999999999888889999999999999999432 358889999999999999999999999999998
Q ss_pred HcCCCCChHhHHHHHHHHHhcC---ChhHHHHHHHHHHHCC
Q 047305 663 ECKAIVTPPSCVKLIHGLCKRG---YLDLAMDVFLYTLKNG 700 (767)
Q Consensus 663 ~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~ 700 (767)
-.. |-++-.+..+++.++-.| ++.-|+++|.++++..
T Consensus 182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 876 888889999999887655 5667999999998854
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=4.6e-08 Score=88.67 Aligned_cols=154 Identities=8% Similarity=0.081 Sum_probs=122.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCh
Q 047305 503 INGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKF 582 (767)
Q Consensus 503 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 582 (767)
+..|...|+++.+....+.+.. |. ..+...++.+++...++..++.+ +.+...|..++..|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 3567788888876544432211 11 01223667788888888888764 67888999999999999999
Q ss_pred hHHHHHHHHHHhccCCCccchHHHHHHH-HhcCC--HHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHH
Q 047305 583 SLAFSLWLQYLRDISGRDDESMKSIEEF-LQKGE--VENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFS 659 (767)
Q Consensus 583 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 659 (767)
++|...|+++++..|+++.++..++.++ ...|+ .++|.+.+.+.. +.+|.++.++..++..+...|++++|+..|+
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al-~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKAL-ALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH-HhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999999999999974 67777 589988888843 2469999999999999999999999999999
Q ss_pred HHHHcCCCCChH
Q 047305 660 VLVECKAIVTPP 671 (767)
Q Consensus 660 ~~~~~~~~~~~~ 671 (767)
++++.. +|+..
T Consensus 169 ~aL~l~-~~~~~ 179 (198)
T PRK10370 169 KVLDLN-SPRVN 179 (198)
T ss_pred HHHhhC-CCCcc
Confidence 999987 56543
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.98 E-value=9.5e-05 Score=77.88 Aligned_cols=160 Identities=16% Similarity=0.063 Sum_probs=97.1
Q ss_pred HHHHHHHHhcCC---hhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHh
Q 047305 570 KSLMTWSCRRRK---FSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLC 646 (767)
Q Consensus 570 ~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~ 646 (767)
+.+++.+.+.++ +-+|+-+++..+...|.|...-..++.+|.-.|-+..|.+.+..++.+..-.+.. =..+...+.
T Consensus 440 ~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTl-gh~~~~~~~ 518 (932)
T KOG2053|consen 440 NHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTL-GHLIFRRAE 518 (932)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccc-hHHHHHHHH
Confidence 456677777765 4568888888899999999999999999999999999999999987653333322 223344555
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC-hHhHHHHHHHHHhcCChhHHHHHHH---HHHHCCCCCCHHHHHHHHHHHhhcCCcc
Q 047305 647 QDGQVKEALNIFSVLVECKAIVT-PPSCVKLIHGLCKRGYLDLAMDVFL---YTLKNGFILRPRVCNYLLRSLLFSKDNK 722 (767)
Q Consensus 647 ~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~---~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 722 (767)
..|++..|...+....+.- ..+ ..+-. ++..-++.|.+++-.+... ++......-...+-+..+..+. ..+.
T Consensus 519 t~g~~~~~s~~~~~~lkfy-~~~~kE~~e-yI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~-~~~~- 594 (932)
T KOG2053|consen 519 TSGRSSFASNTFNEHLKFY-DSSLKETPE-YIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLC-NADR- 594 (932)
T ss_pred hcccchhHHHHHHHHHHHH-hhhhhhhHH-HHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCc-
Confidence 6788888888888776532 221 11222 2223356666666555433 2221111111122233455554 4454
Q ss_pred HHHHHHHHHHHH
Q 047305 723 KVHAYHLLCRMK 734 (767)
Q Consensus 723 ~~~a~~~~~~~~ 734 (767)
.++-...++.|.
T Consensus 595 ~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 595 GTQLLKLLESMK 606 (932)
T ss_pred HHHHHHHHhccc
Confidence 566555555554
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.3e-08 Score=97.80 Aligned_cols=261 Identities=15% Similarity=0.089 Sum_probs=169.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 047305 470 QYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREED 549 (767)
Q Consensus 470 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 549 (767)
-+.-.|.+..++.-.+ ...............+.+++...|+++.++. ++.... .|.......+...+...++.+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3455788888886555 2222112233445567788999998876543 333332 6666667667666655566677
Q ss_pred HHHHHHHhhhCCCCCCH-hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhh
Q 047305 550 AFRIFGQMPQNGCTPSP-AVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDF 628 (767)
Q Consensus 550 A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 628 (767)
++.-++........++. .+......++...|++++|++++.+. .+.......+.+|.+.++++.|.+.+..+..
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77777666544333233 33333445577889999999876442 4555666778999999999999999998764
Q ss_pred cCCCCCccchHHHHHHHhhcC--CHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-H
Q 047305 629 KLNDFQLAPYTIWLIGLCQDG--QVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILR-P 705 (767)
Q Consensus 629 ~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~ 705 (767)
.+.++..+...-+|+....| ++.+|.-+|+++.+. .++++.+.+.++.++...|++++|.+.++++++.+ |+ +
T Consensus 160 -~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~--~~~~ 235 (290)
T PF04733_consen 160 -IDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD--PNDP 235 (290)
T ss_dssp -CSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHH
T ss_pred -cCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--cCCH
Confidence 34454444444455554444 699999999998776 47899999999999999999999999999998654 55 4
Q ss_pred HHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCCCCCcchhh
Q 047305 706 RVCNYLLRSLLFSKDNKKVHAYHLLCRMKSVGYDLDACLYPK 747 (767)
Q Consensus 706 ~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 747 (767)
.+...++.... ..|+..+.+..++.+++.. .|+++....
T Consensus 236 d~LaNliv~~~-~~gk~~~~~~~~l~qL~~~--~p~h~~~~~ 274 (290)
T PF04733_consen 236 DTLANLIVCSL-HLGKPTEAAERYLSQLKQS--NPNHPLVKD 274 (290)
T ss_dssp HHHHHHHHHHH-HTT-TCHHHHHHHHHCHHH--TTTSHHHHH
T ss_pred HHHHHHHHHHH-HhCCChhHHHHHHHHHHHh--CCCChHHHH
Confidence 44444544444 5676347788899988865 677665544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.3e-08 Score=87.18 Aligned_cols=120 Identities=9% Similarity=0.008 Sum_probs=99.8
Q ss_pred HHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCC
Q 047305 587 SLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKA 666 (767)
Q Consensus 587 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 666 (767)
+.|+++++..|.+......++..+...|++++|.+.+..... ..|.++..+..++.+|...|++++|+.+++++++.+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA-YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 356778888888888888889999999999999888877532 358888889999999999999999999999998887
Q ss_pred CCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 047305 667 IVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNY 710 (767)
Q Consensus 667 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 710 (767)
|.++..+..++.+|...|++++|...|+++++.. |+...+..
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~ 123 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEIC--GENPEYSE 123 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--cccchHHH
Confidence 7788889999999999999999999999998754 66554333
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.2e-06 Score=96.04 Aligned_cols=376 Identities=12% Similarity=-0.029 Sum_probs=229.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047305 312 GVMIRGLSEAGKVKDAMKLLSDMRERGIVPD-TYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCR 390 (767)
Q Consensus 312 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 390 (767)
......+...|++.+|......... .+. ..............|+++.+...+..+-......+..........+..
T Consensus 345 ~raa~~~~~~g~~~~Al~~a~~a~d---~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~ 421 (903)
T PRK04841 345 RAAAEAWLAQGFPSEAIHHALAAGD---AQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQS 421 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHCCC---HHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHH
Confidence 3344556677777777664443311 100 011122223344567777776666554211111122223344555667
Q ss_pred cCCHHHHHHHHHHHHHcCC------CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHH
Q 047305 391 NGMVDDAQKLFNKMEKAGC------FPSV--GMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKA 462 (767)
Q Consensus 391 ~g~~~~A~~~~~~~~~~~~------~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (767)
.|++++|...+......-. .+.. .....+...+...|++++|...+++...... .........
T Consensus 422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~---------~~~~~~~~~ 492 (903)
T PRK04841 422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELP---------LTWYYSRIV 492 (903)
T ss_pred CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC---------CccHHHHHH
Confidence 8999999999988754311 1111 1222233456689999999999988742110 000011123
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---CC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-C
Q 047305 463 SLQTMVEQYCTAGLIHKAYKILMQLAESGNL---PD--IITYNSLINGFCKVGNINGALKLFKELQLK----GLR--P-D 530 (767)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--p-~ 530 (767)
....+...+...|+++.|...+++....... +. ..++..+...+...|++++|...+++.... +.. + .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 4456677788899999999999887643111 11 234455667788999999999998887652 211 1 1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhC--CCCC--CHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCcc--ch-
Q 047305 531 SVTYGTLINGLQRVDREEDAFRIFGQMPQN--GCTP--SPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDD--ES- 603 (767)
Q Consensus 531 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~--~~- 603 (767)
...+..+...+...|++++|...+++.... ...+ ....+..+..++...|++++|...++++....+.... .+
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 223445566677889999999999887653 1112 2334445666788899999999999998754332211 11
Q ss_pred H----HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcc----chHHHHHHHhhcCCHHHHHHHHHHHHHc----CCCC-Ch
Q 047305 604 M----KSIEEFLQKGEVENAIQGLLEMDFKLNDFQLA----PYTIWLIGLCQDGQVKEALNIFSVLVEC----KAIV-TP 670 (767)
Q Consensus 604 ~----~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~ 670 (767)
. .....+...|+.+.|...+...... .+.... .+..++.++...|++++|...++++... +.+. ..
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a 731 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLN 731 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHH
Confidence 1 1124445688999997777664321 111111 1457888999999999999999998653 2121 13
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047305 671 PSCVKLIHGLCKRGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 671 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 700 (767)
.+...++.++...|+.++|...+.++++..
T Consensus 732 ~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 732 RNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 457778889999999999999999998864
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=6.6e-06 Score=95.84 Aligned_cols=341 Identities=11% Similarity=-0.052 Sum_probs=213.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC------CCC--HHHHHHHHHHH
Q 047305 317 GLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDS------LPN--THTFTILICGM 388 (767)
Q Consensus 317 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~ 388 (767)
.....|+++.+...+..+.......+..........+...|+++++...+..+...-. .+. ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 3455677777777766552211111222233344555678999999988887654311 111 12223334556
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHH
Q 047305 389 CRNGMVDDAQKLFNKMEKAGCFPSV----GMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASL 464 (767)
Q Consensus 389 ~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (767)
...|+++.|...+++....-...+. ...+.+...+...|++++|...+.+...... ............
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~--------~~g~~~~~~~~~ 534 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMAR--------QHDVYHYALWSL 534 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh--------hhcchHHHHHHH
Confidence 7899999999999998763212222 2345566677889999999999988741100 001111223355
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc----CCC--C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCC--hhh
Q 047305 465 QTMVEQYCTAGLIHKAYKILMQLAES----GNL--P-DIITYNSLINGFCKVGNINGALKLFKELQLKG--LRPD--SVT 533 (767)
Q Consensus 465 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~--~~~ 533 (767)
..+...+...|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+. ...
T Consensus 535 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 614 (903)
T PRK04841 535 LQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQC 614 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHH
Confidence 66778888999999999998876542 111 1 12234455666778899999999998876531 1122 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCCCHh--hH--HHHHHHHHhcCChhHHHHHHHHHHhccCCCccc----h
Q 047305 534 YGTLINGLQRVDREEDAFRIFGQMPQNG--CTPSPA--VY--KSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDE----S 603 (767)
Q Consensus 534 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~--~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~----~ 603 (767)
+..+...+...|++++|...+..+.... ...... .. ......+...|+.+.|...+.......+..... .
T Consensus 615 ~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~ 694 (903)
T PRK04841 615 LAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQW 694 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHH
Confidence 4456677888999999999998885421 111110 10 111233456789999999877765432222211 3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhc-----CCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 047305 604 MKSIEEFLQKGEVENAIQGLLEMDFK-----LNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECK 665 (767)
Q Consensus 604 ~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 665 (767)
..++.++...|++++|...+.+.... .......++..++.++...|+.++|...+.++++..
T Consensus 695 ~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 695 RNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 46788899999999998888873211 111223457788899999999999999999998875
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.2e-07 Score=90.62 Aligned_cols=238 Identities=13% Similarity=0.076 Sum_probs=188.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047305 411 PSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAES 490 (767)
Q Consensus 411 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 490 (767)
|-...-..+...+...|-...|..+|+++. .|...+.+|...|+..+|..+..+..++
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erle----------------------mw~~vi~CY~~lg~~~kaeei~~q~lek 453 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERLE----------------------MWDPVILCYLLLGQHGKAEEINRQELEK 453 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhHH----------------------HHHHHHHHHHHhcccchHHHHHHHHhcC
Confidence 333344567778889999999999998874 6778899999999999999999988874
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHH
Q 047305 491 GNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYK 570 (767)
Q Consensus 491 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 570 (767)
+|+...|..+++......-+++|.++.+..... .-..+.......+++.++.+.++.-.+.+ +.-..+|.
T Consensus 454 --~~d~~lyc~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf 523 (777)
T KOG1128|consen 454 --DPDPRLYCLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWF 523 (777)
T ss_pred --CCcchhHHHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHH
Confidence 678889988888887777789999988876543 11122222344789999999999988753 44567888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCC
Q 047305 571 SLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQ 650 (767)
Q Consensus 571 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 650 (767)
.+.-+..+.++++.|.+.|...+...|++..+|+++..+|.+.|+..+|...+.+.-. .+-.+..+|.+..-+..+.|.
T Consensus 524 ~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn~~~w~iWENymlvsvdvge 602 (777)
T KOG1128|consen 524 GLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CNYQHWQIWENYMLVSVDVGE 602 (777)
T ss_pred hccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cCCCCCeeeechhhhhhhccc
Confidence 8888889999999999999999999999999999999999999999999988888422 236666778888889999999
Q ss_pred HHHHHHHHHHHHHcCC-CCChHhHHHHHHHHH
Q 047305 651 VKEALNIFSVLVECKA-IVTPPSCVKLIHGLC 681 (767)
Q Consensus 651 ~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~ 681 (767)
+++|++.+.++.+... ..|+.+...++....
T Consensus 603 ~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 603 FEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred HHHHHHHHHHHHHhhhhcccchhhHHHHHHHH
Confidence 9999999999864321 235555555555444
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.5e-06 Score=77.74 Aligned_cols=174 Identities=18% Similarity=0.133 Sum_probs=123.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----
Q 047305 468 VEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQR---- 543 (767)
Q Consensus 468 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---- 543 (767)
+..|+..|++++|.+...... +......=...+.+..+.+-|...++.|..-. +..|.+.|+.++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhcc
Confidence 344555566666655554411 22222222344567778888999999998652 56677778877753
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHH
Q 047305 544 VDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGL 623 (767)
Q Consensus 544 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 623 (767)
.+++.+|.-+|++|-+. .+|++.+.+..+-++...|++++|..+++.++...+.++.++.+++-+....|+..++.+.+
T Consensus 186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 35688899999999764 57888888888888889999999999999999999999999999998888999888877776
Q ss_pred HHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHH
Q 047305 624 LEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLV 662 (767)
Q Consensus 624 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 662 (767)
........|..+- ..++++...-|+++.
T Consensus 265 l~QLk~~~p~h~~-----------vk~~~ekeaeFDrl~ 292 (299)
T KOG3081|consen 265 LSQLKLSHPEHPF-----------VKHLNEKEAEFDRLV 292 (299)
T ss_pred HHHHHhcCCcchH-----------HHHHHHHHHHHHHHH
Confidence 6643344565543 235555566666654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.5e-06 Score=94.31 Aligned_cols=253 Identities=11% Similarity=0.055 Sum_probs=176.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccC
Q 047305 376 PNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSV-GMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQG 454 (767)
Q Consensus 376 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 454 (767)
.+...+..|+..+...+++++|..+.+...+.. |+. ..|..+...+.+.++.+++..+ .
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~--P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------- 88 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEH--KKSISALYISGILSLSRRPLNDSNLL--N---------------- 88 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CcceehHHHHHHHHHhhcchhhhhhh--h----------------
Confidence 356677788888888888888888888666543 333 3344444456666665555444 2
Q ss_pred CCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 047305 455 GNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTY 534 (767)
Q Consensus 455 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 534 (767)
++.......++.....+...+.+. .-+...+..++.+|.+.|+.++|...|+++.+.... |..+.
T Consensus 89 ------------~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aL 153 (906)
T PRK14720 89 ------------LIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIV 153 (906)
T ss_pred ------------hhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHH
Confidence 222333333443333344444443 234557888999999999999999999999998733 77889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcC
Q 047305 535 GTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKG 614 (767)
Q Consensus 535 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 614 (767)
|.++..|... +.++|.+++.+++.. +...+++.++.++|.+++...|.+...+..+.......-
T Consensus 154 Nn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~ 217 (906)
T PRK14720 154 KKLATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHR 217 (906)
T ss_pred HHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhh
Confidence 9999999988 999999999988753 667789999999999999999999887664433322221
Q ss_pred CHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHH
Q 047305 615 EVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFL 694 (767)
Q Consensus 615 ~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 694 (767)
.+.++ ...+.-+-..|-..++|++++.+++.+++.. +.|..+...++.+|. +++.+ ...|+
T Consensus 218 ~~~~~---------------~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~--~kY~~-~~~~e 278 (906)
T PRK14720 218 EFTRL---------------VGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK--EKYKD-HSLLE 278 (906)
T ss_pred ccchh---------------HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH--HHccC-cchHH
Confidence 12222 2224444556667789999999999999998 778888888998887 44444 55555
Q ss_pred HHHH
Q 047305 695 YTLK 698 (767)
Q Consensus 695 ~~~~ 698 (767)
+.++
T Consensus 279 e~l~ 282 (906)
T PRK14720 279 DYLK 282 (906)
T ss_pred HHHH
Confidence 5544
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=7.1e-07 Score=96.11 Aligned_cols=200 Identities=12% Similarity=0.104 Sum_probs=149.6
Q ss_pred cchHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 047305 458 VHDKASLQTMVEQYCTAGLIHKAY-KILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGT 536 (767)
Q Consensus 458 ~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 536 (767)
..++..+..+-.+.+.-|..++|- +++.++.+ ++..........+++.-....... ...+...+..
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 91 (694)
T PRK15179 25 ASGPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRR-YPHTELFQVL 91 (694)
T ss_pred CCCcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHh-ccccHHHHHH
Confidence 345555666666677777777663 34444332 122222223333333333333332 3445788889
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCH
Q 047305 537 LINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEV 616 (767)
Q Consensus 537 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 616 (767)
|..+..+.|.+++|..+++.+.+.. +.+......++.++.+.+++++|...+++++...|+++.....++.++.+.|++
T Consensus 92 La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~ 170 (694)
T PRK15179 92 VARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQS 170 (694)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcch
Confidence 9999999999999999999999842 334567777888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhH
Q 047305 617 ENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSC 673 (767)
Q Consensus 617 ~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 673 (767)
++|+..|.++.. ..|+++.++..++.++...|+.++|...|+++.+.. .+....|
T Consensus 171 ~~A~~~y~~~~~-~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~ 225 (694)
T PRK15179 171 EQADACFERLSR-QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKL 225 (694)
T ss_pred HHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHH
Confidence 999999999654 468888899999999999999999999999998775 4444443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.80 E-value=0.0004 Score=73.38 Aligned_cols=219 Identities=14% Similarity=0.093 Sum_probs=139.2
Q ss_pred ChhHHHHHHHHhhhCCCCCChhhHHHHHH--HHhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHH
Q 047305 43 NPQVGFRFFIWAAKRKRLRSFASNSAVIS--MLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALES 120 (767)
Q Consensus 43 ~~~~a~~~f~~~~~~~~~~~~~~~~~l~~--~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 120 (767)
+...|+.-..-+.++.|-. .|..++. ++.+.|+.++|..+++.....+. .+..|...+-.+|.+.+.+++|..+
T Consensus 24 qfkkal~~~~kllkk~Pn~---~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKHPNA---LYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred HHHHHHHHHHHHHHHCCCc---HHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHHHHH
Confidence 5677888887777776522 2333333 34688999999988888877764 3778888999999999999999999
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-C---------hHHHHHH
Q 047305 121 FGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSG-K---------TEVAIKM 190 (767)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~---------~~~A~~~ 190 (767)
|++.... -|+..-...+..+|++.+++..-.++--++.+. ++.+.+.+-++++.....- . ..-|.+.
T Consensus 100 Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 100 YERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 9998864 466777778888888888776655554444442 3455556555666554331 1 2335556
Q ss_pred HHHHHHCC-CCCChhhHHHHHHHHHccCCHhHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 047305 191 LDEMTQRG-ILPNKFTYTIVISGLCQINRADEAYRLFL-KMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDG 268 (767)
Q Consensus 191 ~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 268 (767)
++.+.+.+ ..-+..-.......+...|.+++|++++. ...+.-...+...-+.-+..+...+++.+..++-.++...|
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 66665543 11122223333445556677777777773 33332223333344455666667777777777777776655
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.2e-07 Score=86.69 Aligned_cols=142 Identities=13% Similarity=0.063 Sum_probs=106.8
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHH
Q 047305 538 INGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVE 617 (767)
Q Consensus 538 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 617 (767)
.-.+...|++++|+..++.+++. .+.|+.......+.+.+.|+.++|.+.+++++...|..+....+++.+|.+.|++.
T Consensus 313 A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 313 ALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChH
Confidence 33455678888888888887764 35566666677777888888888888888888888888777788888888888888
Q ss_pred HHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047305 618 NAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTL 697 (767)
Q Consensus 618 ~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 697 (767)
+|+..+..... .+|+++..|..|+.+|...|+..+|...+ +..|...|++++|+..+..+.
T Consensus 392 eai~~L~~~~~-~~p~dp~~w~~LAqay~~~g~~~~a~~A~------------------AE~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 392 EAIRILNRYLF-NDPEDPNGWDLLAQAYAELGNRAEALLAR------------------AEGYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred HHHHHHHHHhh-cCCCCchHHHHHHHHHHHhCchHHHHHHH------------------HHHHHhCCCHHHHHHHHHHHH
Confidence 88888877432 35888888888888888888877766543 334566778888888888776
Q ss_pred HC
Q 047305 698 KN 699 (767)
Q Consensus 698 ~~ 699 (767)
+.
T Consensus 453 ~~ 454 (484)
T COG4783 453 QQ 454 (484)
T ss_pred Hh
Confidence 64
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.3e-06 Score=93.44 Aligned_cols=211 Identities=14% Similarity=0.066 Sum_probs=170.4
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhH
Q 047305 494 PDIITYNSLINGFCKVGNINGALKLFKELQLK-GLRPD---SVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVY 569 (767)
Q Consensus 494 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 569 (767)
.+...|-..|.-....++.++|.++++++... +++-. ...|.++++....-|.-+...+.|+++.+. -..-.+|
T Consensus 1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~ 1533 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVH 1533 (1710)
T ss_pred CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHH
Confidence 35567888888888999999999999998864 22111 125666776666667777888999999874 3345678
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHH-hhhcCCCCCccchHHHHHHHhhc
Q 047305 570 KSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLE-MDFKLNDFQLAPYTIWLIGLCQD 648 (767)
Q Consensus 570 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~p~~~~~~~~l~~~~~~~ 648 (767)
..|...|.+.+++++|.++|+.|++.+.....+|...+..+.++++.++|...+.+ +..-....+.......+..-++.
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 88999999999999999999999999888888888999999999998888888887 44332233666677778888899
Q ss_pred CCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 047305 649 GQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRV 707 (767)
Q Consensus 649 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 707 (767)
|+.+.+..+|+..+... |.-...|+.+++.-.+.|..+-++.+|++++..++.|...-
T Consensus 1614 GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmK 1671 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMK 1671 (1710)
T ss_pred CCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhH
Confidence 99999999999998775 88889999999999999999999999999999888877544
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.1e-06 Score=83.89 Aligned_cols=154 Identities=15% Similarity=0.115 Sum_probs=129.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HhhHHHHHHH
Q 047305 498 TYNSLINGFCKVGNINGALKLFKELQLKGLRPDSV-TYGTLINGLQRVDREEDAFRIFGQMPQNGCTPS-PAVYKSLMTW 575 (767)
Q Consensus 498 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~ 575 (767)
.+....-.+...|++++|+..++.+... .|+.. .+......+.+.++.++|.+.+++++.. .|+ ......+..+
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~a 383 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQA 383 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHH
Confidence 3334444566889999999999999887 55544 5556678899999999999999999985 454 6677788899
Q ss_pred HHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHH
Q 047305 576 SCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEAL 655 (767)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 655 (767)
|.+.|++.+|+.++...+..+|+++..|..++.+|...|+..+| ....+..|...|++++|+
T Consensus 384 ll~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a------------------~~A~AE~~~~~G~~~~A~ 445 (484)
T COG4783 384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEA------------------LLARAEGYALAGRLEQAI 445 (484)
T ss_pred HHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHH------------------HHHHHHHHHhCCCHHHHH
Confidence 99999999999999999999999999999999999999998888 455677788999999999
Q ss_pred HHHHHHHHcCCCCChHhHH
Q 047305 656 NIFSVLVECKAIVTPPSCV 674 (767)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~ 674 (767)
..+..+.+.. +.+...|.
T Consensus 446 ~~l~~A~~~~-~~~~~~~a 463 (484)
T COG4783 446 IFLMRASQQV-KLGFPDWA 463 (484)
T ss_pred HHHHHHHHhc-cCCcHHHH
Confidence 9999998876 66655543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.4e-06 Score=92.75 Aligned_cols=234 Identities=12% Similarity=0.043 Sum_probs=162.7
Q ss_pred hhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047305 448 FLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDI-ITYNSLINGFCKVGNINGALKLFKELQLKG 526 (767)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 526 (767)
|++...+.-.+.+...+..++..+...+++++|.++.+...+. .|+. ..|..++..+...++.+++..+
T Consensus 18 ~~r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-------- 87 (906)
T PRK14720 18 WTRADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-------- 87 (906)
T ss_pred hhhcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--------
Confidence 3333334445667888999999999999999999999977766 3443 3444444466666665555443
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHH
Q 047305 527 LRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKS 606 (767)
Q Consensus 527 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 606 (767)
.++.......++.-...++..|.+ ..-+...+..++.+|.+.|+.++|..+|+++++.+|.++.+.+.+
T Consensus 88 ---------~~l~~~~~~~~~~~ve~~~~~i~~--~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~ 156 (906)
T PRK14720 88 ---------NLIDSFSQNLKWAIVEHICDKILL--YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKL 156 (906)
T ss_pred ---------hhhhhcccccchhHHHHHHHHHHh--hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHH
Confidence 333344444455444444445554 234555888899999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC-----------------
Q 047305 607 IEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVT----------------- 669 (767)
Q Consensus 607 ~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------- 669 (767)
+..|... +.++|++.+.+.. ..|...+++.++.++|.++.... +.+
T Consensus 157 AY~~ae~-dL~KA~~m~~KAV---------------~~~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~~i~~ki~~~~~~ 219 (906)
T PRK14720 157 ATSYEEE-DKEKAITYLKKAI---------------YRFIKKKQYVGIEEIWSKLVHYN-SDDFDFFLRIERKVLGHREF 219 (906)
T ss_pred HHHHHHh-hHHHHHHHHHHHH---------------HHHHhhhcchHHHHHHHHHHhcC-cccchHHHHHHHHHHhhhcc
Confidence 9999999 9999988777632 12455556666666666666554 332
Q ss_pred ---hHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCc
Q 047305 670 ---PPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILR-PRVCNYLLRSLLFSKDN 721 (767)
Q Consensus 670 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~ 721 (767)
...+.-+-..|...++|+++..+++.+++.. |+ ......+..++....++
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~--~~n~~a~~~l~~~y~~kY~~ 273 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD--NKNNKAREELIRFYKEKYKD 273 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC--CcchhhHHHHHHHHHHHccC
Confidence 2233334467778889999999999999854 44 44455577777644443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.3e-07 Score=86.25 Aligned_cols=132 Identities=12% Similarity=0.027 Sum_probs=105.9
Q ss_pred HHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHH
Q 047305 574 TWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKE 653 (767)
Q Consensus 574 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 653 (767)
.-+.+.++|.+|+..|.++++..|.++..|.+.+.+|.+.|.++.|++..+... ..+|....+|..|+.+|...|++++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al-~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL-SIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH-hcChHHHHHHHHHHHHHHccCcHHH
Confidence 446688999999999999999999999999999999999999999998888732 3579999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChh---HHHHHHHHHHHCCCCCCHHH
Q 047305 654 ALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLD---LAMDVFLYTLKNGFILRPRV 707 (767)
Q Consensus 654 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~ 707 (767)
|++.|+++++.. |.+......|-++--+.+..+ .+..-++.+...|.-|+...
T Consensus 168 A~~aykKaLeld-P~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~s 223 (304)
T KOG0553|consen 168 AIEAYKKALELD-PDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSRS 223 (304)
T ss_pred HHHHHHhhhccC-CCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccchh
Confidence 999999999987 677766666766666555544 44444444433343355443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.73 E-value=0.00039 Score=69.09 Aligned_cols=213 Identities=13% Similarity=0.076 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 047305 477 IHKAYKILMQLAESGNLPDIITYNSLINGFCKV---GNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRI 553 (767)
Q Consensus 477 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~ 553 (767)
.+++..+++.....-...+..+|..+..---.. ...+..-..++++...-..--..+|..+++.-.+..-.+.|+.+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 456666666655432222333443333211111 12555566666666542222234688888888888889999999
Q ss_pred HHHhhhCCCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhc-CC
Q 047305 554 FGQMPQNGCTP-SPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFK-LN 631 (767)
Q Consensus 554 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~ 631 (767)
|.++.+.+..+ +..++.+++.-|| .++.+-|..+|+--++..++.+.-....+..+...|+-..|...|+++... ..
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 99999877666 6777788888665 688999999999999999999998888999999999999998888885433 22
Q ss_pred CC-CccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCC----CChHhHHHHHHHHHhcCChhHHHH
Q 047305 632 DF-QLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAI----VTPPSCVKLIHGLCKRGYLDLAMD 691 (767)
Q Consensus 632 p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~ 691 (767)
|+ ...+|..++.--..-|++.-++++-++....- + +.-.....+.+-|.-.+.+.--..
T Consensus 468 ~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af-~~~qe~~~~~~~~~v~RY~~~d~~~c~~~ 531 (656)
T KOG1914|consen 468 ADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAF-PADQEYEGNETALFVDRYGILDLYPCSLD 531 (656)
T ss_pred hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhc-chhhcCCCChHHHHHHHHhhcccccccHH
Confidence 22 23569999988888899999999988875432 3 111233445556665555444333
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.68 E-value=4e-07 Score=78.51 Aligned_cols=125 Identities=14% Similarity=0.032 Sum_probs=91.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCc---cchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC---ccchHHH
Q 047305 568 VYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRD---DESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQ---LAPYTIW 641 (767)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~---~~~~~~l 641 (767)
.|..++..+ ..++...+...++.+.+..|..+ .+...++..+...|++++|...|..+.... |+. +.+...|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-PDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHHHHH
Confidence 444444444 47778888888888888877773 344557788888888888888888844332 332 2356778
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047305 642 LIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYT 696 (767)
Q Consensus 642 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 696 (767)
+.++...|++++|+..++..... +..+..+...|++|.+.|++++|+..|+++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 88888999999999998775332 445667888999999999999999998876
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.68 E-value=4e-07 Score=77.97 Aligned_cols=115 Identities=14% Similarity=0.022 Sum_probs=93.0
Q ss_pred HHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 047305 553 IFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLND 632 (767)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p 632 (767)
.++++++.. +.+......++..+.+.|++++|.+.|++++..+|.++..+..++.++...|++++|+..+.+.. ...|
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~-~~~p 82 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAA-ALDP 82 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCC
Confidence 455555532 22445566677778889999999999999999999999999999999999999999988888742 2458
Q ss_pred CCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCh
Q 047305 633 FQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTP 670 (767)
Q Consensus 633 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 670 (767)
.++..+..++.+|...|++++|+..|+++++.+ |.+.
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~ 119 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIEIC-GENP 119 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-cccc
Confidence 888889999999999999999999999999876 4443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.1e-07 Score=76.58 Aligned_cols=102 Identities=8% Similarity=-0.016 Sum_probs=81.7
Q ss_pred CCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHH
Q 047305 597 SGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKL 676 (767)
Q Consensus 597 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 676 (767)
++.-...+.++..+...|++++|...+.-+ ...+|.+...|..|+.++...|++++|+..|.++...+ +.+|..+..+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L-~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~a 109 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLL-TIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAA 109 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHH
Confidence 444455667777788888888886665553 23568888888899988888999999999999988887 7888888889
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCC
Q 047305 677 IHGLCKRGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 677 ~~~~~~~g~~~~A~~~~~~~~~~~ 700 (767)
+.++...|+.+.|++.|+.++...
T Consensus 110 g~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 110 AECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999999998887653
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.1e-05 Score=86.22 Aligned_cols=208 Identities=13% Similarity=0.077 Sum_probs=172.7
Q ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 047305 457 RVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGN-LP---DIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSV 532 (767)
Q Consensus 457 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 532 (767)
.|.....|...+......++.+.|.+++++++..-. .- -...|.++++.-...|.-+...++|+++.+.. -...
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~ 1531 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYT 1531 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHH
Confidence 345566788889999999999999999999876421 11 13468888887778888888999999998752 2345
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCC--ccchHHHHHHH
Q 047305 533 TYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGR--DDESMKSIEEF 610 (767)
Q Consensus 533 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~ 610 (767)
.|..|...|.+.+++++|.++++.|.+. +.....+|..+++.+.+.++-+.|..++.++++..|.. .......+..-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 7889999999999999999999999885 45778899999999999999999999999999999983 34445678888
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCC
Q 047305 611 LQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIV 668 (767)
Q Consensus 611 ~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 668 (767)
++.|+.+.+...+..+.. ..|.....|+..+..-.+.|+.+.+..+|+++...++++
T Consensus 1611 Fk~GDaeRGRtlfEgll~-ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLS-AYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHh-hCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 899999999888887533 358888889999999999999999999999999887654
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.51 E-value=3e-06 Score=73.08 Aligned_cols=125 Identities=14% Similarity=0.133 Sum_probs=90.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC---HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCc---cchHHHH
Q 047305 534 YGTLINGLQRVDREEDAFRIFGQMPQNGCTPS---PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRD---DESMKSI 607 (767)
Q Consensus 534 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~ 607 (767)
|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.++...|++. .+...++
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 44444444 3677777877788877642 222 23334455667788888888888888887765542 3556778
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHH
Q 047305 608 EEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLV 662 (767)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 662 (767)
.++...|++++|+..+.... ..+..+..+..+|.+|...|++++|...|++++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~--~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIP--DEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHcCCHHHHHHHHHhcc--CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 88899999999988886643 235566678899999999999999999998863
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.5e-06 Score=71.26 Aligned_cols=99 Identities=10% Similarity=-0.166 Sum_probs=85.7
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHH
Q 047305 566 PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGL 645 (767)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~ 645 (767)
....-.+.-.+...|++++|..+|+-....+|.+...+.+++.++...|++++|+..+..... .+|+++.++..++.++
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~-L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ-IKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cCCCCchHHHHHHHHH
Confidence 344445555577899999999999999999999999999999999999999999999988432 4599999999999999
Q ss_pred hhcCCHHHHHHHHHHHHHcC
Q 047305 646 CQDGQVKEALNIFSVLVECK 665 (767)
Q Consensus 646 ~~~g~~~~A~~~~~~~~~~~ 665 (767)
...|+.+.|.+.|+.++...
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999997654
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.0027 Score=63.39 Aligned_cols=75 Identities=15% Similarity=0.077 Sum_probs=43.0
Q ss_pred ChhhHHHHHHHHhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHH
Q 047305 62 SFASNSAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVL 140 (767)
Q Consensus 62 ~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll 140 (767)
+..+|..+++-+..+ .++++...++++...- |.++..|..-+..-.+..+++....+|.+....- .+...|..-+
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lYl 93 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLYL 93 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHHH
Confidence 556666666655544 6666666666665542 4455666666666666666666666666655432 3344444444
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.4e-07 Score=55.00 Aligned_cols=27 Identities=44% Similarity=0.887 Sum_probs=10.1
Q ss_pred CChhhHHHHHHHHHccCCHhHHHHHHH
Q 047305 201 PNKFTYTIVISGLCQINRADEAYRLFL 227 (767)
Q Consensus 201 p~~~~~~~li~~~~~~g~~~~a~~~~~ 227 (767)
||..+|+++|.+|++.|++++|.++|+
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 333333333333333333333333333
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.4e-06 Score=82.45 Aligned_cols=122 Identities=16% Similarity=0.043 Sum_probs=68.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCC
Q 047305 571 SLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQ 650 (767)
Q Consensus 571 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 650 (767)
.++..+...++++.|+++++++.+..|. +...++.++...++..+|++.+.+.- +..|.+...+..-+..|...++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL-~~~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEAL-KENPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHhcCC
Confidence 3334444445555555555555544432 33344555555555555555555521 1235555555555666666666
Q ss_pred HHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047305 651 VKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTL 697 (767)
Q Consensus 651 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 697 (767)
++.|+.+.+++.+.. |.+..+|..|+.+|...|++++|+..++.+.
T Consensus 250 ~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 250 YELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 666666666666664 5556666666666666666666666666553
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.6e-07 Score=54.47 Aligned_cols=32 Identities=41% Similarity=0.894 Sum_probs=18.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 047305 163 NCLPNIVTFSLLINGLSKSGKTEVAIKMLDEM 194 (767)
Q Consensus 163 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 194 (767)
|+.||..+|++||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.4e-05 Score=73.66 Aligned_cols=168 Identities=13% Similarity=0.045 Sum_probs=99.3
Q ss_pred CCHhhHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHH
Q 047305 494 PDIITYNSLI-NGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSL 572 (767)
Q Consensus 494 ~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 572 (767)
|....|..+- .++...|++++|...--...+.... +......-..++.-.++.+.|...|++.+.. .|+...-...
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~ 242 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSA 242 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhH
Confidence 3344454443 4556777888887776666654211 2221111112334456777888888887764 3443222111
Q ss_pred -------------HHHHHhcCChhHHHHHHHHHHhccCCCccc----hHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCc
Q 047305 573 -------------MTWSCRRRKFSLAFSLWLQYLRDISGRDDE----SMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQL 635 (767)
Q Consensus 573 -------------~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~ 635 (767)
..-..+.|++..|.+.|.+++..+|++... |.+.+.+..+.|+..+|+..-.+. ..++|...
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~A-l~iD~syi 321 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEA-LKIDSSYI 321 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhh-hhcCHHHH
Confidence 112346677888888888888777776543 345566677777777776665552 22446556
Q ss_pred cchHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 047305 636 APYTIWLIGLCQDGQVKEALNIFSVLVECK 665 (767)
Q Consensus 636 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 665 (767)
.+|...+.++...++|++|++.|+++.+..
T Consensus 322 kall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 322 KALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 666677777777777777777777776543
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.9e-06 Score=84.18 Aligned_cols=107 Identities=9% Similarity=-0.057 Sum_probs=82.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHH
Q 047305 573 MTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVK 652 (767)
Q Consensus 573 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 652 (767)
+..+...|++++|++.|+++++..|.++.++..++.+|...|++++|+..+.+.. ...|.++.+|..++.+|...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al-~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAI-ELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCcCCHHHHHHHHHHHHHhCCHH
Confidence 3445577888888888888888888888888888888888888888887777742 245777778888888888888888
Q ss_pred HHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 047305 653 EALNIFSVLVECKAIVTPPSCVKLIHGLC 681 (767)
Q Consensus 653 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 681 (767)
+|+..|+++++.+ |.++.....+..+..
T Consensus 88 eA~~~~~~al~l~-P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 88 TAKAALEKGASLA-PGDSRFTKLIKECDE 115 (356)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 8888888888876 666666555554433
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.0003 Score=63.43 Aligned_cols=106 Identities=18% Similarity=0.234 Sum_probs=51.8
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 047305 248 FCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFR----AKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGK 323 (767)
Q Consensus 248 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 323 (767)
+.+..+++-|.+.+++|.+. .+..+.+-|..+|.+ .+.+.+|.-+|+++.++ ..|+..+.+....++...|+
T Consensus 147 ~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 33444555555555555442 133344433333332 23455555555555442 23455555555555566666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 047305 324 VKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGL 358 (767)
Q Consensus 324 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 358 (767)
+++|..++++....... ++.+...++-.-...|.
T Consensus 223 ~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 223 YEEAESLLEEALDKDAK-DPETLANLIVLALHLGK 256 (299)
T ss_pred HHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCC
Confidence 66666666665555433 44444444444444443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.3e-06 Score=77.37 Aligned_cols=105 Identities=10% Similarity=0.069 Sum_probs=91.4
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 047305 607 IEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYL 686 (767)
Q Consensus 607 ~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 686 (767)
+.-..+.++|++|+..+.+.- ..+|.++..|.+.+.+|.+.|.++.|++-.++++..+ |....+|-.|+.+|...|++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI-~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAI-ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHH-hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcH
Confidence 455678899999999888832 3579999999999999999999999999999999998 77788999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047305 687 DLAMDVFLYTLKNGFILRPRVCNYLLRSL 715 (767)
Q Consensus 687 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~l 715 (767)
++|++.|+++++ +.|+..++-.-+...
T Consensus 166 ~~A~~aykKaLe--ldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 166 EEAIEAYKKALE--LDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHHHhhhc--cCCCcHHHHHHHHHH
Confidence 999999999987 669988766655443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.0001 Score=70.52 Aligned_cols=164 Identities=12% Similarity=0.034 Sum_probs=122.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH---HHH-------
Q 047305 468 VEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTY---GTL------- 537 (767)
Q Consensus 468 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~---~~l------- 537 (767)
..++.-.|+++.|..+--..++.... +......-..++...++.+.|...|++.+.. .|+...- ...
T Consensus 176 a~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 176 AECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhhhhcccchhHHHHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHH
Confidence 45677789999999888887766322 3333323334555778899999999998876 4444321 111
Q ss_pred ---HHHHHhcCCHHHHHHHHHHhhhC---CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHH
Q 047305 538 ---INGLQRVDREEDAFRIFGQMPQN---GCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFL 611 (767)
Q Consensus 538 ---~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 611 (767)
.+-..+.|++..|.+.|.+.+.. +.+++...|.....+..+.|+..+|+.-.+.+++.+|....++...+.++.
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHL 332 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 12235789999999999999863 345566777777778889999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHH-hhhcCCCCC
Q 047305 612 QKGEVENAIQGLLE-MDFKLNDFQ 634 (767)
Q Consensus 612 ~~g~~~~A~~~~~~-~~~~~~p~~ 634 (767)
..+++++|++.+.+ +....++..
T Consensus 333 ~le~~e~AV~d~~~a~q~~~s~e~ 356 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQLEKDCEI 356 (486)
T ss_pred HHHHHHHHHHHHHHHHhhccccch
Confidence 99999999999999 554434333
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.2e-05 Score=84.16 Aligned_cols=150 Identities=12% Similarity=0.056 Sum_probs=111.2
Q ss_pred CCCCHhhHHHHHHHHHh--c---CChhHHHHHHHHHHhccCCCccchHHHHHHHHhcC--------CHHHHHHHHHH-hh
Q 047305 562 CTPSPAVYKSLMTWSCR--R---RKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKG--------EVENAIQGLLE-MD 627 (767)
Q Consensus 562 ~~~~~~~~~~l~~~~~~--~---g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~-~~ 627 (767)
.+.+...|..++.+... . ++.+.|+.+|+++++.+|++..++..++.+|.... +...+.+.+.+ ..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 45677777777776332 2 34778999999999999999888887766664431 12233333333 22
Q ss_pred hcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 047305 628 FKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRV 707 (767)
Q Consensus 628 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 707 (767)
...+|.++.+|..++..+...|++++|...++++++.+ |+...|..++.++...|+.++|.+.|+++.+.+ |..++
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~--P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR--PGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCch
Confidence 22356677778889888888999999999999999987 478899999999999999999999999998744 77665
Q ss_pred HHHHHHHHh
Q 047305 708 CNYLLRSLL 716 (767)
Q Consensus 708 ~~~l~~~l~ 716 (767)
.++...+.
T Consensus 489 -~~~~~~~~ 496 (517)
T PRK10153 489 -LYWIENLV 496 (517)
T ss_pred -HHHHHhcc
Confidence 33444443
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.36 E-value=8e-06 Score=68.09 Aligned_cols=61 Identities=18% Similarity=0.106 Sum_probs=30.8
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHcCCCC---ChHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVECKAIV---TPPSCVKLIHGLCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 699 (767)
+..++.++.+.|++++|+..++++.... |. .+.++..++.++...|+.++|...++++++.
T Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 42 HYWLGEAYYAQGKYADAAKAFLAVVKKY-PKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHC-CCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 4445555555555555555555554432 11 1334455555555555555555555555543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.6e-07 Score=69.05 Aligned_cols=56 Identities=18% Similarity=0.153 Sum_probs=27.3
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHH
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLY 695 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 695 (767)
+..++.+|.+.|++++|+.++++ .+.+ +.++.+...++.++.+.|++++|+++|++
T Consensus 28 ~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 28 LYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 44455555555555555555555 3222 23334444445555555555555555544
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.3e-05 Score=74.29 Aligned_cols=114 Identities=10% Similarity=-0.025 Sum_probs=82.6
Q ss_pred HHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhc---CCHHHHHHHHHHH
Q 047305 585 AFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQD---GQVKEALNIFSVL 661 (767)
Q Consensus 585 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~ 661 (767)
...-++.-++.+|+|...|..++.+|...|++..|..-|.+.. +..|+++..+..++.++..+ ..-.+|..+++++
T Consensus 141 l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~-rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~a 219 (287)
T COG4235 141 LIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNAL-RLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQA 219 (287)
T ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 3333455567778888888888888888888888777777632 23577777777777776655 2456777888888
Q ss_pred HHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047305 662 VECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 662 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 700 (767)
+..+ +.|..+...|+..++..|++.+|...|+.++...
T Consensus 220 l~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 220 LALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 8777 7777777788888888888888888888887643
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00011 Score=62.00 Aligned_cols=135 Identities=15% Similarity=0.118 Sum_probs=107.0
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHh-ccCCCccchHHHHHHHHhcCCHHHHHHHHHHh-hhcCCCCCccchH
Q 047305 562 CTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLR-DISGRDDESMKSIEEFLQKGEVENAIQGLLEM-DFKLNDFQLAPYT 639 (767)
Q Consensus 562 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~p~~~~~~~ 639 (767)
..|+...-..+...+.+.|++.+|...|++.+. ..-.++..+..++.+....+++..|...++++ +....-.++....
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 467777777788888899999999999988884 46667777788889999999999998888884 3332233555678
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 640 IWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 640 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
.++.+|...|++.+|...|+.+...- |++.....++..+.++|+.++|...+..+..
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 88999999999999999999998874 7777777788889999988888877766543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.1e-05 Score=67.33 Aligned_cols=105 Identities=10% Similarity=0.091 Sum_probs=80.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCc---cchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC---CccchHH
Q 047305 567 AVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRD---DESMKSIEEFLQKGEVENAIQGLLEMDFKLNDF---QLAPYTI 640 (767)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~---~~~~~~~ 640 (767)
.++..++..+.+.|++++|.+.|.++++..|+++ .+...++.++.+.|++++|+..+.++... .|. .+.++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~~~~ 81 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK-YPKSPKAPDALLK 81 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-CCCCCcccHHHHH
Confidence 3556677778888999999999998888877663 46677888899999999998888884322 244 3456888
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhH
Q 047305 641 WLIGLCQDGQVKEALNIFSVLVECKAIVTPPSC 673 (767)
Q Consensus 641 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 673 (767)
++.++.+.|++++|+..++++++.. |.++.+.
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~ 113 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRY-PGSSAAK 113 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHC-cCChhHH
Confidence 8888888899999999999988876 5555443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.28 E-value=2.9e-06 Score=61.29 Aligned_cols=63 Identities=21% Similarity=0.183 Sum_probs=49.7
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 047305 640 IWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRP 705 (767)
Q Consensus 640 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 705 (767)
.++..+...|++++|+..|+++++.. |.++.++..++.++...|++++|+..|+++++.. |++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~--P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELD--PDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS--TT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCC
Confidence 46777888888888888888888876 7788888888888888888888888888887644 554
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.1e-05 Score=80.97 Aligned_cols=106 Identities=10% Similarity=-0.028 Sum_probs=91.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 047305 605 KSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRG 684 (767)
Q Consensus 605 ~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 684 (767)
..+..+...|++++|+..+.+.. ...|.++.+|..++.+|...|++++|+..++++++.+ |.++.++..++.+|...|
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al-~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAI-DLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 44677788999999999999843 2469999999999999999999999999999999997 888999999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047305 685 YLDLAMDVFLYTLKNGFILRPRVCNYLLRS 714 (767)
Q Consensus 685 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 714 (767)
++++|+..|+++++.+ |+.......+..
T Consensus 85 ~~~eA~~~~~~al~l~--P~~~~~~~~l~~ 112 (356)
T PLN03088 85 EYQTAKAALEKGASLA--PGDSRFTKLIKE 112 (356)
T ss_pred CHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 9999999999999754 776665554433
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.6e-06 Score=66.47 Aligned_cols=81 Identities=17% Similarity=0.169 Sum_probs=51.9
Q ss_pred cCChhHHHHHHHHHHhccCCC--ccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHH
Q 047305 579 RRKFSLAFSLWLQYLRDISGR--DDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALN 656 (767)
Q Consensus 579 ~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 656 (767)
.|+++.|+.+++++++..|.+ ...+..++.+|.+.|++++|+..+.+. +..|.++.....++.+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~--~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL--KLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH--THHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh--CCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 467777777777777777643 344455677777777777777777662 2234454555566777777777777777
Q ss_pred HHHHH
Q 047305 657 IFSVL 661 (767)
Q Consensus 657 ~~~~~ 661 (767)
.++++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 77653
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.5e-06 Score=61.80 Aligned_cols=65 Identities=20% Similarity=0.137 Sum_probs=57.1
Q ss_pred CccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC-ChhHHHHHHHHHHHC
Q 047305 634 QLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRG-YLDLAMDVFLYTLKN 699 (767)
Q Consensus 634 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 699 (767)
++..|..+|..+...|++++|+..|+++++.+ |.++.++..++.+|...| ++++|++.++++++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 34568899999999999999999999999987 788889999999999999 799999999998764
|
... |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.7e-05 Score=63.15 Aligned_cols=92 Identities=15% Similarity=0.125 Sum_probs=51.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 047305 605 KSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRG 684 (767)
Q Consensus 605 ~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 684 (767)
.++..+...|++++|+..+.+... ..|.+..++..++.++...|++++|...++++.+.. +.++.++..++.++...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALE-LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence 344444455555555544444211 124443445566666666666666666666666554 445556666666666666
Q ss_pred ChhHHHHHHHHHHH
Q 047305 685 YLDLAMDVFLYTLK 698 (767)
Q Consensus 685 ~~~~A~~~~~~~~~ 698 (767)
++++|...++++++
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 66666666666543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.7e-05 Score=75.43 Aligned_cols=132 Identities=14% Similarity=0.033 Sum_probs=86.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhc---cCCC---ccchHHHHHHHHhcCCHHHHHHHHHH-h----hhcCCCCCcc
Q 047305 568 VYKSLMTWSCRRRKFSLAFSLWLQYLRD---ISGR---DDESMKSIEEFLQKGEVENAIQGLLE-M----DFKLNDFQLA 636 (767)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~-~----~~~~~p~~~~ 636 (767)
.|..+...|.-.|+++.|+...+.-++. +.+. ..++.+++.++.-.|+++.|++.++. + +.+.....+.
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4445555555667788887776554422 2222 23556777888888888888877776 1 1222223344
Q ss_pred chHHHHHHHhhcCCHHHHHHHHHHHHH----cC-CCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047305 637 PYTIWLIGLCQDGQVKEALNIFSVLVE----CK-AIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 637 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 699 (767)
...+|+++|.-...+++|+.++.+-+. .+ ..-..-+++.|+.+|...|..++|..+.+..++.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 578888888888889999988887432 11 1123456788888998888888888888777664
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.13 E-value=7.5e-05 Score=74.43 Aligned_cols=121 Identities=16% Similarity=0.245 Sum_probs=86.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhc
Q 047305 500 NSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRR 579 (767)
Q Consensus 500 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 579 (767)
..++..+...++++.|+.+++++.+.. |+ ....++..+...++..+|.+++++.++. .+.+...+..-++.+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhc
Confidence 345555666777888888888877662 33 3445667777777777788887777754 244566666666667777
Q ss_pred CChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHH
Q 047305 580 RKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLE 625 (767)
Q Consensus 580 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 625 (767)
++++.|..+.+++++..|.+-..|..++.+|...|++++|+-.+..
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 8888888888888888888888888888888888888888766665
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.10 E-value=9.8e-06 Score=59.23 Aligned_cols=65 Identities=20% Similarity=0.224 Sum_probs=51.8
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047305 646 CQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLR 713 (767)
Q Consensus 646 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 713 (767)
...|++++|++.|+++.... |.++.++..++.+|.+.|++++|..++++++... |+.+.+..+++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~--~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD--PDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG--TTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCHHHHHHHHh
Confidence 46788999999999998886 7788888899999999999999999999888754 77655555543
|
... |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.2e-05 Score=62.44 Aligned_cols=96 Identities=15% Similarity=0.136 Sum_probs=71.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhc
Q 047305 569 YKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQD 648 (767)
Q Consensus 569 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 648 (767)
+..++..+...|++++|...++++++..|.++.++..++.++...|++++|++.+.+... ..|.+...+..++.++...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALE-LDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHHH
Confidence 445566667778888888888888887777777777788888888888888777776322 2466666688888888888
Q ss_pred CCHHHHHHHHHHHHHcC
Q 047305 649 GQVKEALNIFSVLVECK 665 (767)
Q Consensus 649 g~~~~A~~~~~~~~~~~ 665 (767)
|++++|...++++.+.+
T Consensus 82 ~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 82 GKYEEALEAYEKALELD 98 (100)
T ss_pred HhHHHHHHHHHHHHccC
Confidence 88888888888877654
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.09 E-value=6.2e-05 Score=69.82 Aligned_cols=105 Identities=12% Similarity=0.073 Sum_probs=89.7
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcC---CHHHHHHHHHHhhhcCCCCCccchH
Q 047305 563 TPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKG---EVENAIQGLLEMDFKLNDFQLAPYT 639 (767)
Q Consensus 563 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~p~~~~~~~ 639 (767)
+.|...|..|..+|...|+.+.|...|.++.+..|+++..+..++.++.... ...++...+.+. .+.+|.++.+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~a-l~~D~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQA-LALDPANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHH-HhcCCccHHHHH
Confidence 6688999999999999999999999999999999999999999988876532 234565555553 345799999999
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHcCCCCC
Q 047305 640 IWLIGLCQDGQVKEALNIFSVLVECKAIVT 669 (767)
Q Consensus 640 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 669 (767)
.|+..+...|++.+|...|+.|++.. |++
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~l-p~~ 260 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLL-PAD 260 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC-CCC
Confidence 99999999999999999999999987 444
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.06 E-value=4.9e-05 Score=67.65 Aligned_cols=43 Identities=12% Similarity=0.000 Sum_probs=19.1
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLC 681 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 681 (767)
+..++.+|...|++++|+..+++++... +.....+..++.++.
T Consensus 75 ~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i~~ 117 (168)
T CHL00033 75 LYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence 4444444444444444444444444433 333333444444444
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.05 E-value=4.5e-05 Score=67.85 Aligned_cols=99 Identities=9% Similarity=-0.089 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhhh-CCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCC---ccchHHHHHHHHhcCCHHHHHHH
Q 047305 547 EEDAFRIFGQMPQ-NGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGR---DDESMKSIEEFLQKGEVENAIQG 622 (767)
Q Consensus 547 ~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~ 622 (767)
+..+...+..+.+ .+.......+..++..+...|++++|...|++++...|+. +.++..++.++...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4555555655542 2222234455666666777788888888888887665543 23667778888888888888777
Q ss_pred HHHhhhcCCCCCccchHHHHHHHh
Q 047305 623 LLEMDFKLNDFQLAPYTIWLIGLC 646 (767)
Q Consensus 623 ~~~~~~~~~p~~~~~~~~l~~~~~ 646 (767)
+.+... ..|.....+..++.++.
T Consensus 95 ~~~Al~-~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 95 YFQALE-RNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHH-hCcCcHHHHHHHHHHHH
Confidence 777322 34666666777777777
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=6.9e-05 Score=63.09 Aligned_cols=95 Identities=9% Similarity=-0.079 Sum_probs=74.0
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 047305 602 ESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLC 681 (767)
Q Consensus 602 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 681 (767)
..+..+.-+...|++++|...|.-+-. .+|.++..|..|+.++...+.|++|+..|..+...+ +.||....+.+.+|.
T Consensus 39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~-~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l 116 (165)
T PRK15331 39 GLYAHAYEFYNQGRLDEAETFFRFLCI-YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQL 116 (165)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH-hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHH
Confidence 344556666777888888666655432 467778878888888888888888888888887776 677888888888999
Q ss_pred hcCChhHHHHHHHHHHH
Q 047305 682 KRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 682 ~~g~~~~A~~~~~~~~~ 698 (767)
..|+.+.|+..|+.+++
T Consensus 117 ~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 117 LMRKAAKARQCFELVNE 133 (165)
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 99999999998888876
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=6.9e-05 Score=70.84 Aligned_cols=100 Identities=7% Similarity=0.038 Sum_probs=65.3
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCc---cchHHHHHHHHhcCCHHHHHHHHHHhhh--cCCCCCccchHH
Q 047305 566 PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRD---DESMKSIEEFLQKGEVENAIQGLLEMDF--KLNDFQLAPYTI 640 (767)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~p~~~~~~~~ 640 (767)
...|......+.+.|++++|+..|+.+++..|+++ .++++++.+|...|++++|+..+.++.. ..+|..+.++..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 34455555544567888888888888888888774 5666777777777777777766666432 223334455566
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHcC
Q 047305 641 WLIGLCQDGQVKEALNIFSVLVECK 665 (767)
Q Consensus 641 l~~~~~~~g~~~~A~~~~~~~~~~~ 665 (767)
++.++...|++++|..+|+++++..
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 6666666677777777777666653
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=9.6e-05 Score=65.98 Aligned_cols=61 Identities=18% Similarity=0.182 Sum_probs=33.5
Q ss_pred chHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC--------------hhHHHHHHHHHHH
Q 047305 637 PYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGY--------------LDLAMDVFLYTLK 698 (767)
Q Consensus 637 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~~~~ 698 (767)
.+..++.++.+.|++++|+..++++++.. |.+...+..++.+|...|+ +++|.++++++++
T Consensus 74 ~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 74 ILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 35555555555556666666555555543 4445555555555555544 4555555555544
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00013 Score=65.20 Aligned_cols=113 Identities=10% Similarity=0.029 Sum_probs=85.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC--HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHH
Q 047305 532 VTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPS--PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEE 609 (767)
Q Consensus 532 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 609 (767)
..+..+...+...|++++|...|+++++....+. ...+..++.++.+.|++++|...++++++..|.+...+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 3567777788888999999999998876432222 45777788888889999999999999998888888888888888
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 047305 610 FLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECK 665 (767)
Q Consensus 610 ~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 665 (767)
+...|+...+...+... ...+++|++.++++...+
T Consensus 116 ~~~~g~~~~a~~~~~~A---------------------~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEA---------------------EALFDKAAEYWKQAIRLA 150 (172)
T ss_pred HHHcCChHhHhhCHHHH---------------------HHHHHHHHHHHHHHHhhC
Confidence 88888876664332221 123788888888888765
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.7e-05 Score=57.08 Aligned_cols=67 Identities=16% Similarity=0.086 Sum_probs=54.8
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 047305 642 LIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYL 711 (767)
Q Consensus 642 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 711 (767)
..+|.+.+++++|++.+++++..+ |.++..+...+.++...|++++|...|+++++.+ |++.....+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~--p~~~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS--PDDPDARAL 68 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC--CCcHHHHHH
Confidence 457888899999999999998887 7788888889999999999999999999998755 666554443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.3e-05 Score=56.55 Aligned_cols=59 Identities=19% Similarity=0.184 Sum_probs=37.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 047305 606 SIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECK 665 (767)
Q Consensus 606 l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 665 (767)
++..+...|++++|++.+.++.. ..|.++.++..++.++...|++++|+..|+++++..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~-~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALK-QDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHC-CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45556666666666666666432 236666667777777777777777777777776654
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00055 Score=66.67 Aligned_cols=131 Identities=12% Similarity=0.122 Sum_probs=61.3
Q ss_pred HHHHhcCCHHHHHHHHHHhhhC----CCC-CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhc
Q 047305 539 NGLQRVDREEDAFRIFGQMPQN----GCT-PSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQK 613 (767)
Q Consensus 539 ~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 613 (767)
..|...+++++|...|.++.+. +-+ .-...|.....+|. .+++++|++.|++++ ..|...
T Consensus 43 ~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k-~~~~~~Ai~~~~~A~--------------~~y~~~ 107 (282)
T PF14938_consen 43 NCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYK-KGDPDEAIECYEKAI--------------EIYREA 107 (282)
T ss_dssp HHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHH--------------HHHHHC
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hhCHHHHHHHHHHHH--------------HHHHhc
Confidence 3444555555555555554321 100 01223333333343 336666666666654 445555
Q ss_pred CCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhc-CCHHHHHHHHHHHHHcCC---CC--ChHhHHHHHHHHHhcCChh
Q 047305 614 GEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQD-GQVKEALNIFSVLVECKA---IV--TPPSCVKLIHGLCKRGYLD 687 (767)
Q Consensus 614 g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~ 687 (767)
|++..|... +..++.+|... |++++|++.|+++.+.-- .+ -..++..++.++.+.|+++
T Consensus 108 G~~~~aA~~---------------~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~ 172 (282)
T PF14938_consen 108 GRFSQAAKC---------------LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYE 172 (282)
T ss_dssp T-HHHHHHH---------------HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HH
T ss_pred CcHHHHHHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHH
Confidence 655555322 44445555555 666666666666643210 11 1234445566666666666
Q ss_pred HHHHHHHHHHHC
Q 047305 688 LAMDVFLYTLKN 699 (767)
Q Consensus 688 ~A~~~~~~~~~~ 699 (767)
+|.+.|+++...
T Consensus 173 ~A~~~~e~~~~~ 184 (282)
T PF14938_consen 173 EAIEIYEEVAKK 184 (282)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 666666666553
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00019 Score=58.18 Aligned_cols=89 Identities=17% Similarity=0.193 Sum_probs=51.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCC--HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCC---CccchHHHHHHHH
Q 047305 537 LINGLQRVDREEDAFRIFGQMPQNGCTPS--PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISG---RDDESMKSIEEFL 611 (767)
Q Consensus 537 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~ 611 (767)
+..++...|+.++|+.+|++..+.|.... ...+..+...+...|++++|..++++.+...|+ +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44555666666666666666666554433 234445555566666666666666666666555 3333344455555
Q ss_pred hcCCHHHHHHHHHH
Q 047305 612 QKGEVENAIQGLLE 625 (767)
Q Consensus 612 ~~g~~~~A~~~~~~ 625 (767)
..|+.++|++.+..
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 56666666555554
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.022 Score=54.69 Aligned_cols=218 Identities=11% Similarity=0.007 Sum_probs=123.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhh--HHHHHH--HHH-hcCC
Q 047305 473 TAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKG-LRPDSVT--YGTLIN--GLQ-RVDR 546 (767)
Q Consensus 473 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~--~~~l~~--~~~-~~~~ 546 (767)
+.|+.+.|...-+.....-.. -...+...+...+..|+++.|+++++.-.... +.++..- --.|+. +.. -..+
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred hcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence 456666666666655544211 23456666777777777777777777655432 2333211 111111 111 1223
Q ss_pred HHHHHHHHHHhhhCCCCCCHh-hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHH-HHHH
Q 047305 547 EEDAFRIFGQMPQNGCTPSPA-VYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAI-QGLL 624 (767)
Q Consensus 547 ~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~ 624 (767)
...|...-.+..+ +.|+.. .--.-...+.+.|+.-++-.+++.+.+..|.... ...+.+.+.|+..... +...
T Consensus 245 p~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i---a~lY~~ar~gdta~dRlkRa~ 319 (531)
T COG3898 245 PASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI---ALLYVRARSGDTALDRLKRAK 319 (531)
T ss_pred hHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH---HHHHHHhcCCCcHHHHHHHHH
Confidence 5556655555554 233321 2222344566777777777777777776654432 2344555566544331 2222
Q ss_pred HhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc-CChhHHHHHHHHHHHC
Q 047305 625 EMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKR-GYLDLAMDVFLYTLKN 699 (767)
Q Consensus 625 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 699 (767)
++. ...|++..+...++.+-...|++..|..--+.+... .|...+|..|+++-... |+-.+++..+-++++.
T Consensus 320 ~L~-slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 320 KLE-SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHH-hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 222 234777777777777777788888777777766654 46667777777776655 8888888887777764
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00028 Score=57.25 Aligned_cols=61 Identities=15% Similarity=0.106 Sum_probs=29.7
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC--hHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVECKAIVT--PPSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
...+++++-..|+.++|+.+|+++++.|+... ...+..++..|...|++++|..++++.+.
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555555555555555555555443222 22344455555555555555555555543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00035 Score=67.50 Aligned_cols=141 Identities=17% Similarity=0.052 Sum_probs=105.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHH
Q 047305 573 MTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVK 652 (767)
Q Consensus 573 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 652 (767)
...|.+.|++..|...|++++......... +.++. +....+. ...+.+++.+|.+.++|.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~------------~~ee~-~~~~~~k-------~~~~lNlA~c~lKl~~~~ 274 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSF------------DEEEQ-KKAEALK-------LACHLNLAACYLKLKEYK 274 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccC------------CHHHH-HHHHHHH-------HHHhhHHHHHHHhhhhHH
Confidence 456778999999999999987654332221 11222 2222221 123889999999999999
Q ss_pred HHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHH
Q 047305 653 EALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCR 732 (767)
Q Consensus 653 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~ 732 (767)
+|+..-.++++.+ ++|..++..-+.+|...|.++.|+..|+++++ +.|++..+..=+..+..+..+..+...++|.+
T Consensus 275 ~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 275 EAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred HHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998 99999999999999999999999999999998 45888777765555553444424555788888
Q ss_pred HHHc
Q 047305 733 MKSV 736 (767)
Q Consensus 733 ~~~~ 736 (767)
|-..
T Consensus 352 mF~k 355 (397)
T KOG0543|consen 352 MFAK 355 (397)
T ss_pred Hhhc
Confidence 8754
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.90 E-value=2e-05 Score=57.54 Aligned_cols=58 Identities=12% Similarity=0.130 Sum_probs=37.9
Q ss_pred hcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcc
Q 047305 578 RRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLA 636 (767)
Q Consensus 578 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~ 636 (767)
+.|++++|++.|+++++..|.++.+...++.+|.+.|++++|...+.++.. ..|+++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~-~~~~~~~ 60 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK-QDPDNPE 60 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG-GGTTHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCcCHHH
Confidence 567777777777777777777777777777777777777777666666332 2355544
|
... |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0033 Score=59.23 Aligned_cols=95 Identities=12% Similarity=-0.027 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHH
Q 047305 583 SLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLV 662 (767)
Q Consensus 583 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 662 (767)
.+|...|+++++..|+..-+- +|...+..+.... ..--..++..|.+.|+|.-|+.-++.++
T Consensus 141 ~~A~~~~~~li~~yP~S~ya~--------------~A~~rl~~l~~~l----a~~e~~ia~~Y~~~~~y~AA~~r~~~v~ 202 (243)
T PRK10866 141 RAAFRDFSKLVRGYPNSQYTT--------------DATKRLVFLKDRL----AKYELSVAEYYTKRGAYVAVVNRVEQML 202 (243)
T ss_pred HHHHHHHHHHHHHCcCChhHH--------------HHHHHHHHHHHHH----HHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 456777888888888764432 2222222211110 0003366778888899999999999988
Q ss_pred HcCCCC---ChHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047305 663 ECKAIV---TPPSCVKLIHGLCKRGYLDLAMDVFLYT 696 (767)
Q Consensus 663 ~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 696 (767)
+.- |. .+.+...++.+|...|..++|....+..
T Consensus 203 ~~Y-p~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 203 RDY-PDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHC-CCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 653 33 3556777888888999988888877654
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0013 Score=64.13 Aligned_cols=61 Identities=13% Similarity=-0.055 Sum_probs=33.6
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC-----h-HhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVECKAIVT-----P-PSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
+..++.++.+.|+|++|+++|+++.......+ . ..+...+-++...|+.-.|...+++...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 55666667777777777777777654322111 1 1222334455666777777777777643
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00064 Score=67.51 Aligned_cols=144 Identities=10% Similarity=-0.053 Sum_probs=88.5
Q ss_pred hhHHHHHHHHHH---hccCCCccchHHHHHHHHhc---C------CHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcC
Q 047305 582 FSLAFSLWLQYL---RDISGRDDESMKSIEEFLQK---G------EVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDG 649 (767)
Q Consensus 582 ~~~A~~~~~~~~---~~~p~~~~~~~~l~~~~~~~---g------~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 649 (767)
.+.|..+|.+++ +.+|....++-.+++++... | +..+|.+...+ ....+|.++.+...+|.++...+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~r-Aveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDY-VSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH-HHhcCCCCHHHHHHHHHHHHhhc
Confidence 455666666666 56666666666665555432 1 12233333322 23356777777777777777777
Q ss_pred CHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH---HHHHHhhcCCccHHHH
Q 047305 650 QVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNY---LLRSLLFSKDNKKVHA 726 (767)
Q Consensus 650 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---l~~~l~~~~~~~~~~a 726 (767)
+++.|...|+++...+ |....++...++...-.|+.++|.+.++++++.+ |-...... .+..++ ..+ .++|
T Consensus 353 ~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs--P~~~~~~~~~~~~~~~~-~~~--~~~~ 426 (458)
T PRK11906 353 QAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLE--PRRRKAVVIKECVDMYV-PNP--LKNN 426 (458)
T ss_pred chhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--chhhHHHHHHHHHHHHc-CCc--hhhh
Confidence 7888888888887776 6777777777777788888888888888776633 54333222 222333 343 5666
Q ss_pred HHHHHH
Q 047305 727 YHLLCR 732 (767)
Q Consensus 727 ~~~~~~ 732 (767)
..++-+
T Consensus 427 ~~~~~~ 432 (458)
T PRK11906 427 IKLYYK 432 (458)
T ss_pred HHHHhh
Confidence 666544
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0016 Score=55.36 Aligned_cols=127 Identities=12% Similarity=0.079 Sum_probs=103.7
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCC-CCChHhHHHHHHHHH
Q 047305 603 SMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKA-IVTPPSCVKLIHGLC 681 (767)
Q Consensus 603 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~ 681 (767)
.+.++....+.|++.+|...+.+...+....++..+..++++....++...|...+++.-+.+. ..+|.....++..|.
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~la 171 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLA 171 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHH
Confidence 3578999999999999999999977777788888899999999999999999999999987641 124677788999999
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHHH
Q 047305 682 KRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCRM 733 (767)
Q Consensus 682 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~ 733 (767)
..|++.+|+..|+.++. .-|++....+....|. ++|+ .+++..-+..+
T Consensus 172 a~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La-~qgr-~~ea~aq~~~v 219 (251)
T COG4700 172 AQGKYADAESAFEVAIS--YYPGPQARIYYAEMLA-KQGR-LREANAQYVAV 219 (251)
T ss_pred hcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHH-Hhcc-hhHHHHHHHHH
Confidence 99999999999999986 4588877677777777 6775 55555544443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0035 Score=59.05 Aligned_cols=176 Identities=8% Similarity=-0.035 Sum_probs=105.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHh-h---HHHHHHHHHhcCChhHHHHHHHHHHhccCCCccch---HHH
Q 047305 534 YGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPA-V---YKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDES---MKS 606 (767)
Q Consensus 534 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~---~~l 606 (767)
+-.....+...|++++|...|+.+.... |... . .-.++.++.+.+++++|...+++.++..|+++.+- ..+
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~ 112 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMR 112 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHH
Confidence 3344555677889999999999988742 3322 2 23456677888999999999999998888887654 333
Q ss_pred HHHHHhcCC------------------HHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCC
Q 047305 607 IEEFLQKGE------------------VENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIV 668 (767)
Q Consensus 607 ~~~~~~~g~------------------~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 668 (767)
+.++...++ ..+|+..+.++... -|++ .-..+|...+..+.+.-
T Consensus 113 g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~-yP~S--------------~ya~~A~~rl~~l~~~l--- 174 (243)
T PRK10866 113 GLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG-YPNS--------------QYTTDATKRLVFLKDRL--- 174 (243)
T ss_pred HHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH-CcCC--------------hhHHHHHHHHHHHHHHH---
Confidence 444333321 12233333332211 2333 22344444333332210
Q ss_pred ChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhhcCCccHHHHHHHHHHHH
Q 047305 669 TPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPR----VCNYLLRSLLFSKDNKKVHAYHLLCRMK 734 (767)
Q Consensus 669 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~l~~~~~~~~~~a~~~~~~~~ 734 (767)
...-..++.-|.+.|.+..|+.-++.+++.- |+.+ ....+..++. ..|. .++|....+.+.
T Consensus 175 -a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y--p~t~~~~eal~~l~~ay~-~lg~-~~~a~~~~~~l~ 239 (243)
T PRK10866 175 -AKYELSVAEYYTKRGAYVAVVNRVEQMLRDY--PDTQATRDALPLMENAYR-QLQL-NAQADKVAKIIA 239 (243)
T ss_pred -HHHHHHHHHHHHHcCchHHHHHHHHHHHHHC--CCCchHHHHHHHHHHHHH-HcCC-hHHHHHHHHHHh
Confidence 1112357778999999999999999999864 4432 2334555555 7777 788877766554
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00034 Score=66.92 Aligned_cols=48 Identities=17% Similarity=0.243 Sum_probs=23.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHH
Q 047305 317 GLSEAGKVKDAMKLLSDMRERGIVPDT----YCYNALIKGFCDLGLLDQARSL 365 (767)
Q Consensus 317 ~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~ 365 (767)
-+++.|+......+|+...+.|.. |. ..|..+..+|...+++++|.+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~y 77 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKY 77 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhh
Confidence 345566666666666666555433 22 2233344444444445544443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00058 Score=62.75 Aligned_cols=102 Identities=11% Similarity=0.086 Sum_probs=71.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCc---cchHHHHHHHHhcCCHHHHHHHHHHhhh--cCCCCCccchHHHH
Q 047305 568 VYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRD---DESMKSIEEFLQKGEVENAIQGLLEMDF--KLNDFQLAPYTIWL 642 (767)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~p~~~~~~~~l~ 642 (767)
.|+.-++.+ +.|++.+|...|...++..|+.+ .++++++.++...|++++|...+..+.. +..|..+.++.-|+
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 677766644 78889999999999999888875 4566777777777777777777776422 23344455667777
Q ss_pred HHHhhcCCHHHHHHHHHHHHHcCCCCChH
Q 047305 643 IGLCQDGQVKEALNIFSVLVECKAIVTPP 671 (767)
Q Consensus 643 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 671 (767)
.+..+.|+.++|-.+|+++.+.- |..+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~Y-P~t~a 250 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRY-PGTDA 250 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHC-CCCHH
Confidence 77777777777777777776653 44443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00061 Score=64.50 Aligned_cols=101 Identities=13% Similarity=0.011 Sum_probs=79.1
Q ss_pred chHHHHHHH-HhcCCHHHHHHHHHHhhhcCCCCC---ccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCC---ChHhHH
Q 047305 602 ESMKSIEEF-LQKGEVENAIQGLLEMDFKLNDFQ---LAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIV---TPPSCV 674 (767)
Q Consensus 602 ~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~ 674 (767)
..+..+..+ .+.|++++|+..|.+.... .|++ +.++..+|.+|...|++++|+..|+++++.. |. .+.++.
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~-yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-P~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK-YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-PKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCcchhHHHH
Confidence 334444444 5679999999999885332 4665 4679999999999999999999999998754 33 467777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 047305 675 KLIHGLCKRGYLDLAMDVFLYTLKNGFILRPR 706 (767)
Q Consensus 675 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 706 (767)
.++.++...|++++|...|+++++.. |++.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~y--P~s~ 251 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKY--PGTD 251 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC--cCCH
Confidence 88999999999999999999998754 6554
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0001 Score=53.97 Aligned_cols=60 Identities=18% Similarity=0.239 Sum_probs=29.5
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHH-hhhcCCCCCccchHHHHHHHhhcC-CHHHHHHHHHHHHHc
Q 047305 603 SMKSIEEFLQKGEVENAIQGLLE-MDFKLNDFQLAPYTIWLIGLCQDG-QVKEALNIFSVLVEC 664 (767)
Q Consensus 603 ~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 664 (767)
+..++..+...|++++|+..+.+ +. .+|+++.+|..++.+|...| ++++|++.++++++.
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 34444444444444444444444 22 13555555555555555555 455555555555544
|
... |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0024 Score=54.07 Aligned_cols=88 Identities=11% Similarity=-0.110 Sum_probs=76.3
Q ss_pred HHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHH
Q 047305 576 SCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEAL 655 (767)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 655 (767)
+...|++++|..+|.-+.-.+|.++.-+..++.++...+++++|+..+.-... .+++++.+....+.+|...|+.+.|.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~-l~~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFT-LLKNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cccCCCCccchHHHHHHHhCCHHHHH
Confidence 45789999999999999899999999889999999999999999888777322 34788888999999999999999999
Q ss_pred HHHHHHHHc
Q 047305 656 NIFSVLVEC 664 (767)
Q Consensus 656 ~~~~~~~~~ 664 (767)
..|+.+++.
T Consensus 126 ~~f~~a~~~ 134 (165)
T PRK15331 126 QCFELVNER 134 (165)
T ss_pred HHHHHHHhC
Confidence 999999873
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.70 E-value=6.7e-05 Score=45.97 Aligned_cols=33 Identities=45% Similarity=0.872 Sum_probs=16.5
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCC
Q 047305 205 TYTIVISGLCQINRADEAYRLFLKMKDSGCSPD 237 (767)
Q Consensus 205 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 237 (767)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 345555555555555555555555555444444
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0011 Score=66.67 Aligned_cols=124 Identities=13% Similarity=0.127 Sum_probs=98.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 047305 233 GCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKD--GFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVL 310 (767)
Q Consensus 233 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 310 (767)
+.+.+......+++.+....+++.+..++.+.... ....-..+..++++.|...|..++++.+++.=..-|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556777778888888888888888888888764 2223345667889999999999999999888888899999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 047305 311 YGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDL 356 (767)
Q Consensus 311 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 356 (767)
+|.|+..+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999998888777666777776666666554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.67 E-value=9.2e-05 Score=45.33 Aligned_cols=33 Identities=48% Similarity=0.918 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 047305 310 LYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPD 342 (767)
Q Consensus 310 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 342 (767)
+||.++.+|++.|++++|.++|.+|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.64 E-value=9e-05 Score=44.97 Aligned_cols=31 Identities=29% Similarity=0.527 Sum_probs=13.9
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHCCCC
Q 047305 205 TYTIVISGLCQINRADEAYRLFLKMKDSGCS 235 (767)
Q Consensus 205 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 235 (767)
+|+.++.+|++.|+++.|.++|++|.+.|++
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0017 Score=68.22 Aligned_cols=83 Identities=12% Similarity=0.037 Sum_probs=56.0
Q ss_pred HHHHHHHHHHh--ccCCCccchHHHHHHHHhcCCHHHHHHHHHH-hhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHH
Q 047305 584 LAFSLWLQYLR--DISGRDDESMKSIEEFLQKGEVENAIQGLLE-MDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSV 660 (767)
Q Consensus 584 ~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 660 (767)
.+.+...+++. ..|.++.++..++..+...|++++|...+.+ +.. .| +..+|..+|.++...|+.++|.+.+++
T Consensus 402 ~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 402 ALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EM-SWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred HHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444333 2555566666666666677888888777777 332 35 355688888888888999999999988
Q ss_pred HHHcCCCCCh
Q 047305 661 LVECKAIVTP 670 (767)
Q Consensus 661 ~~~~~~~~~~ 670 (767)
+...+ |-++
T Consensus 479 A~~L~-P~~p 487 (517)
T PRK10153 479 AFNLR-PGEN 487 (517)
T ss_pred HHhcC-CCCc
Confidence 88876 4444
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00019 Score=71.01 Aligned_cols=67 Identities=18% Similarity=0.076 Sum_probs=38.9
Q ss_pred CCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChH---hHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 631 NDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPP---SCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 631 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
+|+++..+++++.+|.+.|++++|+..|+++++.+ |.+.. +|+.++.+|...|+.++|+..++++++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35555556666666666666666666666665554 33332 355566666666666666666666654
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00086 Score=67.33 Aligned_cols=78 Identities=14% Similarity=0.208 Sum_probs=36.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047305 172 SLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFC 249 (767)
Q Consensus 172 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 249 (767)
.++++.|.+.|..+.++.++..=...|+-||..++|.+|+.+.+.|++..|.++...|...+...+..|+...+.+|.
T Consensus 107 ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 107 HALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred HHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 344444444444444444444444444444555555555555455555444444444443333333344433333333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00012 Score=44.39 Aligned_cols=32 Identities=31% Similarity=0.730 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 047305 310 LYGVMIRGLSEAGKVKDAMKLLSDMRERGIVP 341 (767)
Q Consensus 310 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 341 (767)
+|+.++.+|.+.|+++.|.++|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.061 Score=55.77 Aligned_cols=205 Identities=14% Similarity=0.086 Sum_probs=118.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 047305 305 EPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRER-GIVP--------DTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSL 375 (767)
Q Consensus 305 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 375 (767)
.|.+..|..+.......-.++-|+..|-+.... |++. +...-..-+.+ --|++++|++++-++.++++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhhh-
Confidence 467778888777666666666666666554322 2211 01111111222 24889999999888766653
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhcc
Q 047305 376 PNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCF--PSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQ 453 (767)
Q Consensus 376 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 453 (767)
.+..+.+.|++-.+.++++.--. +.. .-..+++.+...+.....|++|.+.|....
T Consensus 766 --------Aielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~------------- 823 (1189)
T KOG2041|consen 766 --------AIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG------------- 823 (1189)
T ss_pred --------hHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------
Confidence 45667778888777666543111 100 113578888888888888999988887652
Q ss_pred CCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 047305 454 GGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVT 533 (767)
Q Consensus 454 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 533 (767)
.....++++....++++-..+...+ +.+....-.+..++.+.|.-++|.+.+-+. + .|.
T Consensus 824 ---------~~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~pk--- 882 (1189)
T KOG2041|consen 824 ---------DTENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR---S-LPK--- 882 (1189)
T ss_pred ---------chHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc---c-CcH---
Confidence 1123344444444444443333333 224445566777777777777777665432 1 111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHh
Q 047305 534 YGTLINGLQRVDREEDAFRIFGQM 557 (767)
Q Consensus 534 ~~~l~~~~~~~~~~~~A~~~~~~~ 557 (767)
..+.+|...+++.+|.++.++.
T Consensus 883 --aAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 883 --AAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhc
Confidence 2345666677777777666554
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0094 Score=54.69 Aligned_cols=92 Identities=16% Similarity=0.096 Sum_probs=56.5
Q ss_pred CChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHH
Q 047305 580 RKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFS 659 (767)
Q Consensus 580 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 659 (767)
+...+|...|+.+++..|+.+-+-. |...+..+.... ..--..++..|.+.|.+..|+.-++
T Consensus 104 ~~~~~A~~~~~~li~~yP~S~y~~~--------------A~~~l~~l~~~l----a~~e~~ia~~Y~~~~~y~aA~~r~~ 165 (203)
T PF13525_consen 104 TSTRKAIEEFEELIKRYPNSEYAEE--------------AKKRLAELRNRL----AEHELYIARFYYKRGKYKAAIIRFQ 165 (203)
T ss_dssp HHHHHHHHHHHHHHHH-TTSTTHHH--------------HHHHHHHHHHHH----HHHHHHHHHHHHCTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcCchHHHH--------------HHHHHHHHHHHH----HHHHHHHHHHHHHcccHHHHHHHHH
Confidence 4456788888888888888766532 222222211100 0013457888999999999999999
Q ss_pred HHHHcCCCCC---hHhHHHHHHHHHhcCChhHHH
Q 047305 660 VLVECKAIVT---PPSCVKLIHGLCKRGYLDLAM 690 (767)
Q Consensus 660 ~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~ 690 (767)
.+++.- |.+ ..++..++.+|.+.|..+.|.
T Consensus 166 ~v~~~y-p~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 166 YVIENY-PDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHS-TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHC-CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 988763 444 334667778888888877443
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.016 Score=52.51 Aligned_cols=130 Identities=12% Similarity=0.062 Sum_probs=88.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC-----CCCCCHhhHHHH
Q 047305 498 TYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQN-----GCTPSPAVYKSL 572 (767)
Q Consensus 498 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~l 572 (767)
..+.++.++.-.|.+.-...++.+.++...+.++.....+.+.-++.|+.+.|..+|++..+. ++.....+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 345566666677777777888888887655556666777777778888888888888866542 222233333333
Q ss_pred HHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhh
Q 047305 573 MTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMD 627 (767)
Q Consensus 573 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 627 (767)
...|.-.+++..|...|.+++..+|.++.+.++.+-+..-.|+...|++.+..+.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~ 313 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMV 313 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445666777777777777777777777777777777777777777777766654
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.089 Score=50.24 Aligned_cols=199 Identities=16% Similarity=0.039 Sum_probs=89.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHH-
Q 047305 497 ITYNSLINGFCKVGNINGALKLFKELQLK-GLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMT- 574 (767)
Q Consensus 497 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~- 574 (767)
..+......+...+....+...+...... ........+......+...+++..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 34444445555555555555555555431 112233344444444555555555555555555432221 111111111
Q ss_pred HHHhcCChhHHHHHHHHHHhccCC---CccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC-CccchHHHHHHHhhcCC
Q 047305 575 WSCRRRKFSLAFSLWLQYLRDISG---RDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDF-QLAPYTIWLIGLCQDGQ 650 (767)
Q Consensus 575 ~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~ 650 (767)
++...|+++.|...|.+++...|. ...........+...++.+.++..+.+.... .+. ....+..++..+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL-NPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh-CcccchHHHHHhhHHHHHccc
Confidence 445555555555555555443331 1222223333344455555555555542211 122 23335555555555555
Q ss_pred HHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 651 VKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 651 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
+++|...+..+.... +.....+..++..+...|.++++...+++.+.
T Consensus 218 ~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 218 YEEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555443 22233344444444444445555555555544
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.16 Score=52.92 Aligned_cols=204 Identities=11% Similarity=0.017 Sum_probs=109.0
Q ss_pred CChhhHHHHHHHHhcCCCchHHHHHHHHHHhC-CCCc--------CHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCC
Q 047305 61 RSFASNSAVISMLLKPNGFDLYWQTLDELRSG-NVSV--------VSDVFFVLISGYYKVGDCEKALESFGKMKEFDCQP 131 (767)
Q Consensus 61 ~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~-~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 131 (767)
+.+..|..+.......-.++.|...|-++..- |+.. +...-..=+.+| -|++++|.++|-.|.+++
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drrD--- 764 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRRD--- 764 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchhh---
Confidence 35667777776666666666666666554321 1110 111111112222 377888888887776543
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHH
Q 047305 132 DVYIYNAVLNIAFRKQLFLLALAVYYEMVKL-NCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVI 210 (767)
Q Consensus 132 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li 210 (767)
..+..+.+.|++..+.+++..--.. .-..-..+|+.+...+.....|+.|.+.+..-.. ....+
T Consensus 765 ------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~ 829 (1189)
T KOG2041|consen 765 ------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQI 829 (1189)
T ss_pred ------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHH
Confidence 2345556677777766665431110 0011134566777777777777777776664332 12335
Q ss_pred HHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHH
Q 047305 211 SGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYD 290 (767)
Q Consensus 211 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 290 (767)
.++.+...+++-..+...+. -+......+..++.+.|.-++|.+.+-+... | ...+..|...+++.
T Consensus 830 ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~ 895 (1189)
T KOG2041|consen 830 ECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWG 895 (1189)
T ss_pred HHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHH
Confidence 55555555554444433332 2445566677777777777777666543211 1 23455666666777
Q ss_pred HHHHHHHH
Q 047305 291 EAYAWYRK 298 (767)
Q Consensus 291 ~A~~~~~~ 298 (767)
+|.++-+.
T Consensus 896 ~avelaq~ 903 (1189)
T KOG2041|consen 896 EAVELAQR 903 (1189)
T ss_pred HHHHHHHh
Confidence 77666544
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.52 E-value=6.4e-05 Score=56.67 Aligned_cols=64 Identities=14% Similarity=0.130 Sum_probs=50.7
Q ss_pred ccchHHHHHHHhhcCCHHHHHHHHHHHHHc----CC-CCC-hHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 635 LAPYTIWLIGLCQDGQVKEALNIFSVLVEC----KA-IVT-PPSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 635 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
..+++.++.+|...|++++|++.|+++++. |. .++ ..++..++.+|...|++++|+++++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456899999999999999999999998643 20 111 45688899999999999999999998864
|
... |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0015 Score=63.30 Aligned_cols=131 Identities=11% Similarity=0.079 Sum_probs=75.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHh-cCChhHHHHHHHHHHhccCCCccchHHHHHHHH
Q 047305 533 TYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCR-RRKFSLAFSLWLQYLRDISGRDDESMKSIEEFL 611 (767)
Q Consensus 533 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 611 (767)
+|..+++...+.+..+.|+.+|.++++.+ ..+..+|...+.+-.. .++.+.|..+|+.+++..|.+...+...+..+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 45566666666666677777777776432 2334445444444223 345555777777777777777766666666666
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCC--ccchHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 047305 612 QKGEVENAIQGLLEMDFKLNDFQ--LAPYTIWLIGLCQDGQVKEALNIFSVLVEC 664 (767)
Q Consensus 612 ~~g~~~~A~~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 664 (767)
..|+.+.|..++++......+.. ..+|..++..=.+.|+++.+..+.+++.+.
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66777777666666322222221 234666666666667777777777777665
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.021 Score=52.37 Aligned_cols=176 Identities=14% Similarity=0.125 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 047305 414 GMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNL 493 (767)
Q Consensus 414 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 493 (767)
..+-.....+...|++.+|...|+++.... ...+....+...++.++.+.|+++.|...+++..+..+.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----------P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~ 74 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRY-----------PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN 74 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH------------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 334445556677888888888888875211 122344556667777788888888888888887766332
Q ss_pred CCHhhHHHHHHHHHhc-------------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 047305 494 PDIITYNSLINGFCKV-------------GNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQN 560 (767)
Q Consensus 494 ~~~~~~~~l~~~~~~~-------------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 560 (767)
.....+...+.+.+.. +...+|...|+.+ +.-|-.+....+|...+..+.+.
T Consensus 75 ~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~l---------------i~~yP~S~y~~~A~~~l~~l~~~ 139 (203)
T PF13525_consen 75 SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEEL---------------IKRYPNSEYAEEAKKRLAELRNR 139 (203)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHH---------------HHH-TTSTTHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHH---------------HHHCcCchHHHHHHHHHHHHHHH
Confidence 2222222222222111 1112333333333 33333344445554444444321
Q ss_pred CCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCcc---chHHHHHHHHhcCCHHHH
Q 047305 561 GCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDD---ESMKSIEEFLQKGEVENA 619 (767)
Q Consensus 561 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A 619 (767)
-...-..+++.|.+.|.+..|..-++.+++..|+.+. ++..++.+|.+.|..+.|
T Consensus 140 ----la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 140 ----LAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp ----HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred ----HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 0111123566688888888888888888888887654 345567777777776644
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0016 Score=50.57 Aligned_cols=69 Identities=14% Similarity=0.327 Sum_probs=33.5
Q ss_pred cCChHHHHHHHHHHHHCCC-CCChhhHHHHHHHHHccC--------CHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047305 181 SGKTEVAIKMLDEMTQRGI-LPNKFTYTIVISGLCQIN--------RADEAYRLFLKMKDSGCSPDFVAYNALLNGFC 249 (767)
Q Consensus 181 ~g~~~~A~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 249 (767)
.+++...-.+|+.+++.|+ .|++.+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|+.++..+.
T Consensus 38 ~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Ll 115 (120)
T PF08579_consen 38 NEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLL 115 (120)
T ss_pred hcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 3444444444444444444 444444444444433321 23344555555555556666666665555543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0016 Score=51.57 Aligned_cols=90 Identities=14% Similarity=0.076 Sum_probs=64.5
Q ss_pred HHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHH-hhhcCCCCCc---cchHHHHHHHhhcCC
Q 047305 575 WSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLE-MDFKLNDFQL---APYTIWLIGLCQDGQ 650 (767)
Q Consensus 575 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~p~~~---~~~~~l~~~~~~~g~ 650 (767)
++...|+.+.|++.|.+++...|.++.+|++.+.++.-.|+.++|+..+.+ +... .|... .+|...+..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa-g~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELA-GDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHHHHhCc
Confidence 456778888888888888888888888888888888888888888777777 3322 22222 245566667777777
Q ss_pred HHHHHHHHHHHHHcC
Q 047305 651 VKEALNIFSVLVECK 665 (767)
Q Consensus 651 ~~~A~~~~~~~~~~~ 665 (767)
-+.|..-|+.+.+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777777776666
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0022 Score=49.78 Aligned_cols=76 Identities=21% Similarity=0.322 Sum_probs=45.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhCCC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHCCCCCCHHHHHH
Q 047305 103 VLISGYYKVGDCEKALESFGKMKEFDC-QPDVYIYNAVLNIAFRKQ--------LFLLALAVYYEMVKLNCLPNIVTFSL 173 (767)
Q Consensus 103 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~~~ 173 (767)
..|..+...+++...-.+|+.+.+.|+ -|++.+|+.++.+.+++. .+...+.+|+.|+..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344555555777777777777777777 777777777777666543 12234444555555555555555555
Q ss_pred HHHHH
Q 047305 174 LINGL 178 (767)
Q Consensus 174 l~~~~ 178 (767)
++..+
T Consensus 110 vl~~L 114 (120)
T PF08579_consen 110 VLGSL 114 (120)
T ss_pred HHHHH
Confidence 54444
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.06 Score=51.46 Aligned_cols=221 Identities=16% Similarity=0.027 Sum_probs=146.2
Q ss_pred CCHHHHHHHHHHHHHCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCCCHhhHHHHHHHHHhcCChhHHHH
Q 047305 510 GNINGALKLFKELQLKGLR-PDSVTYGTLINGLQRVDREEDAFRIFGQMPQN-GCTPSPAVYKSLMTWSCRRRKFSLAFS 587 (767)
Q Consensus 510 g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~ 587 (767)
+....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4455555555555544221 12455666667777788888888777777642 234455666667777777788888888
Q ss_pred HHHHHHhccCCCccchHHHHH-HHHhcCCHHHHHHHHHHhhhcCCC---CCccchHHHHHHHhhcCCHHHHHHHHHHHHH
Q 047305 588 LWLQYLRDISGRDDESMKSIE-EFLQKGEVENAIQGLLEMDFKLND---FQLAPYTIWLIGLCQDGQVKEALNIFSVLVE 663 (767)
Q Consensus 588 ~~~~~~~~~p~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 663 (767)
.+.......+.+......... .+...|++++|...+.+... ..| .....+......+...+++++|+..+.++.+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 888888776666555555555 78888888888888887532 344 2333455555556777888888888888877
Q ss_pred cCCCC-ChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcCCccHHHHHHHHHHHHHc
Q 047305 664 CKAIV-TPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILR-PRVCNYLLRSLLFSKDNKKVHAYHLLCRMKSV 736 (767)
Q Consensus 664 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~~ 736 (767)
.. +. ....+..++..+...+++++|...+..+.... |+ ..........+. ..+. .+++...+++....
T Consensus 196 ~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~ 265 (291)
T COG0457 196 LN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--PDNAEALYNLALLLL-ELGR-YEEALEALEKALEL 265 (291)
T ss_pred hC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--cccHHHHhhHHHHHH-HcCC-HHHHHHHHHHHHHh
Confidence 65 44 46777788888888888888888888887643 44 333444444444 5555 77777777776543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.11 Score=50.15 Aligned_cols=290 Identities=13% Similarity=0.044 Sum_probs=184.3
Q ss_pred HHHHHHHHH--HcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHcC
Q 047305 416 FNALIDGLC--KAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMV--EQYCTAGLIHKAYKILMQLAESG 491 (767)
Q Consensus 416 ~~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~ 491 (767)
|..|-.++. ..|+-..|.+.-.+.. +-...|.+.+..++ +.-.-.|+++.|.+-|+.|...
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~--------------~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d- 149 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARAS--------------KLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD- 149 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHH--------------hhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-
Confidence 334444433 3567777766665542 11223333333333 3445679999999999999863
Q ss_pred CCCCHh--hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCCHh-
Q 047305 492 NLPDII--TYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNG-CTPSPA- 567 (767)
Q Consensus 492 ~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~- 567 (767)
|... ....|.-.-.+.|..+.|..+-++....... -...+...+...+..|+++.|+++++.-.+.. +.++..
T Consensus 150 --PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~ae 226 (531)
T COG3898 150 --PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAE 226 (531)
T ss_pred --hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHH
Confidence 2222 2233333345789999999998888765322 34567888899999999999999998876532 333322
Q ss_pred -hHHHHHHH--H-HhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHH
Q 047305 568 -VYKSLMTW--S-CRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLI 643 (767)
Q Consensus 568 -~~~~l~~~--~-~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~ 643 (767)
.-..|+.+ . .-.-+...|...-.+..+..|+-.......+.++++.|+..++-++++..-. ..| ++ -..+.+
T Consensus 227 R~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK-~eP-HP--~ia~lY 302 (531)
T COG3898 227 RSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWK-AEP-HP--DIALLY 302 (531)
T ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHh-cCC-Ch--HHHHHH
Confidence 11122221 1 1234678888888889999999999999999999999999999888887431 122 12 223344
Q ss_pred HHhhcCCHHHHHHHHHHH---HHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh-cC
Q 047305 644 GLCQDGQVKEALNIFSVL---VECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLF-SK 719 (767)
Q Consensus 644 ~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~ 719 (767)
.+.+.|+ .++.-++++ .... +.+.+....++.+-...|++..|+.--+.+.+.. |....+. |+.-.-. ..
T Consensus 303 ~~ar~gd--ta~dRlkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~--pres~~l-LlAdIeeAet 376 (531)
T COG3898 303 VRARSGD--TALDRLKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAREA--PRESAYL-LLADIEEAET 376 (531)
T ss_pred HHhcCCC--cHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC--chhhHHH-HHHHHHhhcc
Confidence 4555555 444444444 3443 6778888899999999999999999888876532 4433322 2222221 34
Q ss_pred CccHHHHHHHHHHHH
Q 047305 720 DNKKVHAYHLLCRMK 734 (767)
Q Consensus 720 ~~~~~~a~~~~~~~~ 734 (767)
|+ -.++..++-+..
T Consensus 377 GD-qg~vR~wlAqav 390 (531)
T COG3898 377 GD-QGKVRQWLAQAV 390 (531)
T ss_pred Cc-hHHHHHHHHHHh
Confidence 65 677777777755
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0039 Score=62.15 Aligned_cols=147 Identities=9% Similarity=-0.075 Sum_probs=106.4
Q ss_pred HHHHHHHHHHhhh-CCCCCC-HhhHHHHHHHHHh---------cCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCC
Q 047305 547 EEDAFRIFGQMPQ-NGCTPS-PAVYKSLMTWSCR---------RRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGE 615 (767)
Q Consensus 547 ~~~A~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 615 (767)
.+.|..+|.+++. ..+.|+ ...|..+..++.. .....+|.+.-+++++.+|.|+.+...++.+....|+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~ 353 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ 353 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Confidence 3567777777762 113343 3344444433221 2355678888899999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHH--HHHhcCChhHHHHHH
Q 047305 616 VENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIH--GLCKRGYLDLAMDVF 693 (767)
Q Consensus 616 ~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~ 693 (767)
++.|...+.+.. ..+|+.+.+|...++.+...|+.++|.+.++++.+.. |--..+...-.+ .|+-.+ +++|+.+|
T Consensus 354 ~~~a~~~f~rA~-~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs-P~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 354 AKVSHILFEQAK-IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLE-PRRRKAVVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred hhhHHHHHHHHh-hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-chhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence 999988877732 2569999999999999999999999999999998886 444333333333 455554 78888887
Q ss_pred HHH
Q 047305 694 LYT 696 (767)
Q Consensus 694 ~~~ 696 (767)
-+-
T Consensus 431 ~~~ 433 (458)
T PRK11906 431 YKE 433 (458)
T ss_pred hhc
Confidence 654
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.068 Score=52.40 Aligned_cols=107 Identities=16% Similarity=0.164 Sum_probs=56.3
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 047305 205 TYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLF 284 (767)
Q Consensus 205 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 284 (767)
+.+..|.-+...|+...|.++-.+.. .|+...|-..+.+++..++|++-.++... .-++.-|..++..|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 34444455555566555555544442 24555566666666666666655544321 123455666666666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047305 285 RAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLL 331 (767)
Q Consensus 285 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 331 (767)
+.|+..+|..+..++ + +..-+..|.+.|++.+|.+.-
T Consensus 249 ~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHH
Confidence 666666665555441 1 133445555666666655543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00066 Score=50.28 Aligned_cols=34 Identities=21% Similarity=0.051 Sum_probs=16.2
Q ss_pred CCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 047305 632 DFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECK 665 (767)
Q Consensus 632 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 665 (767)
|+++..+...+.++...|++++|.+.++++++.+
T Consensus 26 p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 26 PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 4444444444444444444444444444444443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.012 Score=50.86 Aligned_cols=118 Identities=19% Similarity=0.142 Sum_probs=73.1
Q ss_pred HHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHH
Q 047305 576 SCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEAL 655 (767)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 655 (767)
....++.+.+.+.+.+++.....+.-.-... ..-.......+.+.- ..++..++..+...|++++|+
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~------~~W~~~~r~~l~~~~-------~~~~~~l~~~~~~~~~~~~a~ 82 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD------EEWVEPERERLRELY-------LDALERLAEALLEAGDYEEAL 82 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT------STTHHHHHHHHHHHH-------HHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc------cHHHHHHHHHHHHHH-------HHHHHHHHHHHHhccCHHHHH
Confidence 3456788888888888886543332211000 111112222333321 123667788888899999999
Q ss_pred HHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHHH
Q 047305 656 NIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLK-----NGFILRPRV 707 (767)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~ 707 (767)
..+++++..+ |-+...+..++.+|...|+..+|.++|+++.+ .|+.|++.+
T Consensus 83 ~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 83 RLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 9999999987 88888999999999999999999999998754 366666654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0037 Score=60.65 Aligned_cols=104 Identities=13% Similarity=0.009 Sum_probs=49.4
Q ss_pred HHHHhcCCHHHHHHHHHHhhhC-----CCC---------CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchH
Q 047305 539 NGLQRVDREEDAFRIFGQMPQN-----GCT---------PSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESM 604 (767)
Q Consensus 539 ~~~~~~~~~~~A~~~~~~~~~~-----~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 604 (767)
+.+.+.|++..|...|++++.. +.+ .-..++..++.+|.+.+++.+|++..+++++..|+|..+++
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALy 295 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALY 295 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHH
Confidence 3455556666666665554431 000 11223344445555555555555555555555555555555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHH
Q 047305 605 KSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLI 643 (767)
Q Consensus 605 ~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~ 643 (767)
..+.++...|+++.|+..|.++. +..|+|-.+-..+..
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~-k~~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKAL-KLEPSNKAARAELIK 333 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHH-HhCCCcHHHHHHHHH
Confidence 55555555555555544444421 123444443333333
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00041 Score=40.89 Aligned_cols=26 Identities=35% Similarity=0.782 Sum_probs=10.5
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHH
Q 047305 206 YTIVISGLCQINRADEAYRLFLKMKD 231 (767)
Q Consensus 206 ~~~li~~~~~~g~~~~a~~~~~~~~~ 231 (767)
|+.++++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 33444444444444444444444433
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00036 Score=41.15 Aligned_cols=29 Identities=45% Similarity=0.768 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 047305 170 TFSLLINGLSKSGKTEVAIKMLDEMTQRG 198 (767)
Q Consensus 170 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 198 (767)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45556666666666666666666655544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0053 Score=56.58 Aligned_cols=102 Identities=19% Similarity=0.160 Sum_probs=81.9
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHhhhc--CCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCC--CCChHhHHHHHH
Q 047305 603 SMKSIEEFLQKGEVENAIQGLLEMDFK--LNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKA--IVTPPSCVKLIH 678 (767)
Q Consensus 603 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~ 678 (767)
.+..+..+...|++..|...|.+...+ ..+-.+.++.-|+.+++..|++++|...|..+.+... +..|+.+..|+.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 566677788999999999999984322 2233456799999999999999999999999976431 334778999999
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 047305 679 GLCKRGYLDLAMDVFLYTLKNGFILRPR 706 (767)
Q Consensus 679 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 706 (767)
+..+.|+.++|...|+++++.- |+..
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~Y--P~t~ 249 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRY--PGTD 249 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHC--CCCH
Confidence 9999999999999999998865 5543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.072 Score=52.64 Aligned_cols=116 Identities=13% Similarity=0.131 Sum_probs=79.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCChhhHHHHHHHHHh---cCCHHHHHHHHHHhhhCCCCCCHhhHHHH
Q 047305 499 YNSLINGFCKVGNINGALKLFKELQLKG---LRPDSVTYGTLINGLQR---VDREEDAFRIFGQMPQNGCTPSPAVYKSL 572 (767)
Q Consensus 499 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 572 (767)
...++-+|....+++..+++++.+.... +.-....-...+-++.+ .|+.++|++++..++...-.+++.+|..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 3455667889999999999999998651 11122223345566777 89999999999996665567888899888
Q ss_pred HHHHHh---------cCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCC
Q 047305 573 MTWSCR---------RRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGE 615 (767)
Q Consensus 573 ~~~~~~---------~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 615 (767)
++.|.. ....++|++.|.+..+..|+. -.-.+++..+...|.
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGH 274 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCC
Confidence 877542 235788999999888877433 233344445555554
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00069 Score=50.97 Aligned_cols=69 Identities=12% Similarity=0.064 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHh
Q 047305 567 AVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLC 646 (767)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~ 646 (767)
.++..+..+|...|++++|++.|+++++ ...... ...|.....+..++.+|.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~---------------------------~~~~~~-~~~~~~a~~~~~lg~~~~ 57 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALD---------------------------IEEQLG-DDHPDTANTLNNLGECYY 57 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH---------------------------HHHHTT-THHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---------------------------HHHHHC-CCCHHHHHHHHHHHHHHH
Confidence 4566677777777777777777766652 111111 011233456889999999
Q ss_pred hcCCHHHHHHHHHHHHH
Q 047305 647 QDGQVKEALNIFSVLVE 663 (767)
Q Consensus 647 ~~g~~~~A~~~~~~~~~ 663 (767)
..|++++|+++++++.+
T Consensus 58 ~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 58 RLGDYEEALEYYQKALD 74 (78)
T ss_dssp HTTHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHh
Confidence 99999999999999865
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.17 Score=46.08 Aligned_cols=145 Identities=11% Similarity=-0.020 Sum_probs=87.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhc
Q 047305 534 YGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQK 613 (767)
Q Consensus 534 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 613 (767)
.+.++..+.-.|.+.-....+.+.++...+.++.....++.+-.+.|+.+.|..+|++.-+..
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~----------------- 242 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVT----------------- 242 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH-----------------
Confidence 344455555556666666666666665445556666666666666666666666665442110
Q ss_pred CCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHH
Q 047305 614 GEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVF 693 (767)
Q Consensus 614 g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 693 (767)
.. +.. ......+..+.+.+|.-++++.+|...+.++...+ +.++...+.-+-++.-.|+..+|++.+
T Consensus 243 -------~k---L~~--~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~ 309 (366)
T KOG2796|consen 243 -------QK---LDG--LQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQL 309 (366)
T ss_pred -------hh---hhc--cchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHH
Confidence 00 100 01122234455556666778888888888887776 667777777777777778888888888
Q ss_pred HHHHHCCCCCCHHHHHH
Q 047305 694 LYTLKNGFILRPRVCNY 710 (767)
Q Consensus 694 ~~~~~~~~~~~~~~~~~ 710 (767)
+.++... |.+.+-+.
T Consensus 310 e~~~~~~--P~~~l~es 324 (366)
T KOG2796|consen 310 EAMVQQD--PRHYLHES 324 (366)
T ss_pred HHHhccC--Cccchhhh
Confidence 8886643 55544443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0041 Score=60.29 Aligned_cols=131 Identities=13% Similarity=-0.039 Sum_probs=100.4
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHh-cCCHHHHHHHHHHhhhcCCCCCccchHHHHHHH
Q 047305 567 AVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQ-KGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGL 645 (767)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~ 645 (767)
.+|..++....+.+..+.|+.+|.++++..+....+|...+..-.. .++.+.|.++++... +..|.+...|...+..+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~gl-k~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGL-KKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHH-HHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHCCCCHHHHHHHHHHH
Confidence 4677788888888889999999999997767777888888877555 556666888887732 23588888899999999
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCCCh---HhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047305 646 CQDGQVKEALNIFSVLVECKAIVTP---PSCVKLIHGLCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 646 ~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 699 (767)
.+.|+.+.|..+|++++.. ++++. ..|...+..=.+.|+++....+.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999866 34443 57888888888899999999999988774
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.15 Score=46.85 Aligned_cols=202 Identities=14% Similarity=0.051 Sum_probs=111.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchH---H
Q 047305 531 SVTYGTLINGLQRVDREEDAFRIFGQMPQNG--CTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESM---K 605 (767)
Q Consensus 531 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~---~ 605 (767)
...|+..+ .-.+.|++++|.+.|+.+.... -+-...+.-.++-++.+.+++++|+...++.++..|.++.+-+ .
T Consensus 35 ~~LY~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNEGL-TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 33444443 4456788899999888887642 1223445555666677888899999888888888888876543 2
Q ss_pred HHHHHHh-----cCCHH---HHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHH
Q 047305 606 SIEEFLQ-----KGEVE---NAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLI 677 (767)
Q Consensus 606 l~~~~~~-----~g~~~---~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 677 (767)
.+.++.. ..+.. +|...+.++..+ -|++.-+ ..|..-...+...- ..-=..++
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r-yPnS~Ya--------------~dA~~~i~~~~d~L----A~~Em~Ia 174 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQR-YPNSRYA--------------PDAKARIVKLNDAL----AGHEMAIA 174 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHH-CCCCcch--------------hhHHHHHHHHHHHH----HHHHHHHH
Confidence 2333322 11222 233333332221 3444321 12222222221110 01123567
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHH--HHHHHHHHhhcCCccHHHHHHHHHHHHHcCCCCCCcchhhhhhhcCCC
Q 047305 678 HGLCKRGYLDLAMDVFLYTLKNGFILRPRV--CNYLLRSLLFSKDNKKVHAYHLLCRMKSVGYDLDACLYPKTKSLLPGP 755 (767)
Q Consensus 678 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 755 (767)
+-|.+.|.+-.|..-++.+++.- .-.+.+ ....+...+..-|- .++|...-+-+... .|+.+.|+.-.-+++..
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~y-~~t~~~~eaL~~l~eaY~~lgl-~~~a~~~~~vl~~N--~p~s~~~~~~~~~~~~~ 250 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLENY-PDTSAVREALARLEEAYYALGL-TDEAKKTAKVLGAN--YPDSQWYKDAYRLLQRG 250 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhcc-ccccchHHHHHHHHHHHHHhCC-hHHHHHHHHHHHhc--CCCCcchhhhhhccccc
Confidence 78888888888888888888752 212222 22233333336776 77777765555443 67777666655555555
Q ss_pred C
Q 047305 756 W 756 (767)
Q Consensus 756 ~ 756 (767)
|
T Consensus 251 ~ 251 (254)
T COG4105 251 G 251 (254)
T ss_pred c
Confidence 5
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.045 Score=51.03 Aligned_cols=120 Identities=14% Similarity=0.098 Sum_probs=75.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChh
Q 047305 504 NGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFS 583 (767)
Q Consensus 504 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 583 (767)
......|++.+|..+|......... +......++.+|...|+.+.|..++..+....-.........-+..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3456778888888888888876433 455667778888888888888888888754321222222222334444444444
Q ss_pred HHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHH
Q 047305 584 LAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLE 625 (767)
Q Consensus 584 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 625 (767)
+...+ +.-+..+|++..+...++..+...|+.++|.+.+..
T Consensus 221 ~~~~l-~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~ 261 (304)
T COG3118 221 EIQDL-QRRLAADPDDVEAALALADQLHLVGRNEAALEHLLA 261 (304)
T ss_pred CHHHH-HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33332 233456677777777777777777777777666666
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0069 Score=48.16 Aligned_cols=92 Identities=18% Similarity=0.098 Sum_probs=75.6
Q ss_pred HHHHHhcCCHHHHHHHHHH-hhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHh---HHHHHHHHHh
Q 047305 607 IEEFLQKGEVENAIQGLLE-MDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPS---CVKLIHGLCK 682 (767)
Q Consensus 607 ~~~~~~~g~~~~A~~~~~~-~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~ 682 (767)
+-+....|+.+.|++.|.+ +. ..|..+++|++.+.++.-+|+.++|++-+.++++..-+..... +..-+-.|..
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 5567789999999999988 44 3589999999999999999999999999999988753444333 4445667889
Q ss_pred cCChhHHHHHHHHHHHCC
Q 047305 683 RGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 683 ~g~~~~A~~~~~~~~~~~ 700 (767)
.|+-+.|+.-|+.+.+.|
T Consensus 128 ~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 128 LGNDDAARADFEAAAQLG 145 (175)
T ss_pred hCchHHHHHhHHHHHHhC
Confidence 999999999999998765
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.001 Score=43.09 Aligned_cols=41 Identities=15% Similarity=0.093 Sum_probs=31.0
Q ss_pred chHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 047305 637 PYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIH 678 (767)
Q Consensus 637 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 678 (767)
++..++.+|...|++++|+++|+++++.. |.|+.++..++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHhhh
Confidence 46777888888888888888888888776 777777766653
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0029 Score=62.91 Aligned_cols=61 Identities=11% Similarity=-0.041 Sum_probs=38.1
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccc---hHHHHHHHHhcCCHHHHHHHHHH
Q 047305 565 SPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDE---SMKSIEEFLQKGEVENAIQGLLE 625 (767)
Q Consensus 565 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~ 625 (767)
+...+..+..+|.+.|++++|+..|+++++.+|++..+ +++++.+|...|+.++|+..+.+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~Lrr 137 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRT 137 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45555666666666666666666666666666666543 56666666666666666666665
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0096 Score=49.28 Aligned_cols=28 Identities=11% Similarity=0.198 Sum_probs=14.3
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVECK 665 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 665 (767)
...++.+|.+.|++++|+..+++.++.+
T Consensus 50 qL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 50 QLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 4445555555555555555555555443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.022 Score=59.67 Aligned_cols=119 Identities=15% Similarity=0.003 Sum_probs=82.6
Q ss_pred cCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHH-hh--hcCCCCCccchHHHHHHHhhcCCHHHHH
Q 047305 579 RRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLE-MD--FKLNDFQLAPYTIWLIGLCQDGQVKEAL 655 (767)
Q Consensus 579 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~--~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 655 (767)
....+.|.++++.+.+..|+...-....+..+...|+.++|++.+.+ +. .....-....+..+++.+.-..+|++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 44667777888888888887776667777777788888888887775 21 1111222334778888888899999999
Q ss_pred HHHHHHHHcCCCCChHhHHH-HHHHHHhcCCh-------hHHHHHHHHHHH
Q 047305 656 NIFSVLVECKAIVTPPSCVK-LIHGLCKRGYL-------DLAMDVFLYTLK 698 (767)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~-------~~A~~~~~~~~~ 698 (767)
..|.++.+.+ .-+...|.. .+-++...|+. ++|.+++.++..
T Consensus 326 ~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 326 EYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 9999988765 444444433 34456677877 788888887754
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.017 Score=54.25 Aligned_cols=161 Identities=8% Similarity=-0.094 Sum_probs=114.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHH----HHHHHHHhcCChh
Q 047305 508 KVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYK----SLMTWSCRRRKFS 583 (767)
Q Consensus 508 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~ 583 (767)
..|++.+|...++++.+. .+.|...+...-.+|.-.|+.+.-...+++++.. ..++.+.|. .+.-++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 467788888888888875 2335666666667788888888888888888754 244443333 3334466889999
Q ss_pred HHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCC-CC--CccchHHHHHHHhhcCCHHHHHHHHHH
Q 047305 584 LAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLN-DF--QLAPYTIWLIGLCQDGQVKEALNIFSV 660 (767)
Q Consensus 584 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 660 (767)
+|++.-+++++.+|.+.-+....++++...|++.++.+.+.+-+.... .. -...|-..+-.+...+.|+.|+++|++
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 999999999999999999999999999999999999877776432211 11 111255566667777999999999988
Q ss_pred H-HHcCCCCCh
Q 047305 661 L-VECKAIVTP 670 (767)
Q Consensus 661 ~-~~~~~~~~~ 670 (767)
- .+.--+.|.
T Consensus 273 ei~k~l~k~Da 283 (491)
T KOG2610|consen 273 EIWKRLEKDDA 283 (491)
T ss_pred HHHHHhhccch
Confidence 4 333224444
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.048 Score=51.36 Aligned_cols=117 Identities=15% Similarity=0.015 Sum_probs=67.5
Q ss_pred hcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcc---chHHHHHHHhhcCCHHHH
Q 047305 578 RRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLA---PYTIWLIGLCQDGQVKEA 654 (767)
Q Consensus 578 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A 654 (767)
..|+..+|-..++++++..|.+..++.-.-.++.-.|+.+.-...+.++-.+..|+-|. ....++..+...|-|++|
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 45666666666666666666666666555556666666655555555543333333322 112233344455666666
Q ss_pred HHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHH
Q 047305 655 LNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLY 695 (767)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 695 (767)
.+.-+++.+.+ +.|..+.-.++.++...|+.+++.+..++
T Consensus 195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 195 EKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 66666666665 55555555666666666666666666554
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.026 Score=50.15 Aligned_cols=104 Identities=21% Similarity=0.346 Sum_probs=67.3
Q ss_pred cCHHHHHHHHHHHHh-----cCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 047305 96 VVSDVFFVLISGYYK-----VGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVT 170 (767)
Q Consensus 96 ~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 170 (767)
.+..+|..++..|.+ .|..+-....+..|.+.|+..|..+|+.|++.+=+ |.+ .|....
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~f---------------vp~n~f 108 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKF---------------VPRNFF 108 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCc---------------ccccHH
Confidence 455667677766654 35666677777888888888888888888876543 211 121111
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC
Q 047305 171 FSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINR 218 (767)
Q Consensus 171 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 218 (767)
. .+..- .-.+-+-|++++++|...|+.||..++..++..+.+.+.
T Consensus 109 Q-~~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 109 Q-AEFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred H-HHhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1 11111 123456678888888888888888888888888766553
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.071 Score=49.79 Aligned_cols=123 Identities=19% Similarity=0.138 Sum_probs=84.6
Q ss_pred HHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHH
Q 047305 576 SCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEAL 655 (767)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 655 (767)
....|++.+|...|..++...|.+..+...++.+|...|+.+.|...+..+...........+..-+..+.+.....+..
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 55778888888888888888888888888888888888888888777766533211111111122334455555555555
Q ss_pred HHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047305 656 NIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 700 (767)
.+-++.. .+ |.|...-..++..|...|+.++|.+.+=.+++++
T Consensus 224 ~l~~~~a-ad-Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 224 DLQRRLA-AD-PDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred HHHHHHH-hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 5544443 33 6678888888888888888888888888777664
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0013 Score=42.50 Aligned_cols=42 Identities=14% Similarity=-0.094 Sum_probs=33.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHH
Q 047305 567 AVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIE 608 (767)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 608 (767)
.++..+...|.+.|++++|+++|+++++..|+++.++..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 356677888888888888888888888888888887776653
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.042 Score=52.31 Aligned_cols=228 Identities=13% Similarity=0.057 Sum_probs=146.7
Q ss_pred HHhcCCHHHHHHHHHHHHHcC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC---CChhhHHHHHHHHHh
Q 047305 471 YCTAGLIHKAYKILMQLAESG--NLPDIITYNSLINGFCKVGNINGALKLFKELQLK--GLR---PDSVTYGTLINGLQR 543 (767)
Q Consensus 471 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~---p~~~~~~~l~~~~~~ 543 (767)
+..+.+.++|+..+.+...+- ......++..+..+.+..|.+++++..--.-+.. ... .-...|..+.+++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777877777665431 0112346677778888889888877542221111 011 112356677777777
Q ss_pred cCCHHHHHHHHHHhhhC-CCCC---CHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCc------cchHHHHHHHHhc
Q 047305 544 VDREEDAFRIFGQMPQN-GCTP---SPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRD------DESMKSIEEFLQK 613 (767)
Q Consensus 544 ~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~ 613 (767)
..++.+++.+-+.-... |..| .......+..++...+.++++.+.|+.+++....+. .++..++..+.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 77777777776665542 2222 123334466667778899999999999986433332 3567889999999
Q ss_pred CCHHHHHHHHHHh---hhcCC--CC----CccchHHHHHHHhhcCCHHHHHHHHHHHHH----cCCCC-ChHhHHHHHHH
Q 047305 614 GEVENAIQGLLEM---DFKLN--DF----QLAPYTIWLIGLCQDGQVKEALNIFSVLVE----CKAIV-TPPSCVKLIHG 679 (767)
Q Consensus 614 g~~~~A~~~~~~~---~~~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~-~~~~~~~l~~~ 679 (767)
.++++|+-...+. ..... .. ...++..|+-+|...|+..+|.+.-+++.+ .|-.+ -.-+...++++
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 9999885444441 11111 11 123466788889999999999999988743 33111 23356679999
Q ss_pred HHhcCChhHHHHHHHHHHH
Q 047305 680 LCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 680 ~~~~g~~~~A~~~~~~~~~ 698 (767)
|...|+.+.|..-|+.+..
T Consensus 256 yR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHhcccHhHHHHHHHHHHH
Confidence 9999999999999998865
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.052 Score=47.79 Aligned_cols=92 Identities=17% Similarity=0.092 Sum_probs=43.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHH
Q 047305 507 CKVGNINGALKLFKELQLKGLRPDS-VTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLA 585 (767)
Q Consensus 507 ~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 585 (767)
-..|-..-|.--|.+.... .|+. .+||.+.-.+...|+++.|.+.|+...+.+..-+-...+.-+.. .--|++.-|
T Consensus 76 DSlGL~~LAR~DftQaLai--~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~-YY~gR~~LA 152 (297)
T COG4785 76 DSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL-YYGGRYKLA 152 (297)
T ss_pred hhhhHHHHHhhhhhhhhhc--CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee-eecCchHhh
Confidence 3344444444444444433 3442 34555555555666666666666666554322222222222222 234566666
Q ss_pred HHHHHHHHhccCCCcc
Q 047305 586 FSLWLQYLRDISGRDD 601 (767)
Q Consensus 586 ~~~~~~~~~~~p~~~~ 601 (767)
.+-+.+..+.+|.+|-
T Consensus 153 q~d~~~fYQ~D~~DPf 168 (297)
T COG4785 153 QDDLLAFYQDDPNDPF 168 (297)
T ss_pred HHHHHHHHhcCCCChH
Confidence 6555555555555554
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.05 Score=53.99 Aligned_cols=144 Identities=13% Similarity=-0.030 Sum_probs=105.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC--------CccchHHHHH
Q 047305 572 LMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDF--------QLAPYTIWLI 643 (767)
Q Consensus 572 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~--------~~~~~~~l~~ 643 (767)
-+..|.+..+...+..-.+.+.....+.+.........+...|++.+|++.+........|. ....|++||-
T Consensus 212 kVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGc 291 (696)
T KOG2471|consen 212 KVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGC 291 (696)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcce
Confidence 34445555566666555555555555666677777888899999999999998854433343 3345799999
Q ss_pred HHhhcCCHHHHHHHHHHHHH-------cCCCCC----------hHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 047305 644 GLCQDGQVKEALNIFSVLVE-------CKAIVT----------PPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPR 706 (767)
Q Consensus 644 ~~~~~g~~~~A~~~~~~~~~-------~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 706 (767)
++++.|.|.-+..+|.+++. .|++|. -.+.+..|-.|...|+.-.|.+.|.++.+. +.-+|.
T Consensus 292 Ih~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPr 370 (696)
T KOG2471|consen 292 IHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPR 370 (696)
T ss_pred EeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcH
Confidence 99999999999999999874 343442 344566777899999999999999999864 677888
Q ss_pred HHHHHHHHHh
Q 047305 707 VCNYLLRSLL 716 (767)
Q Consensus 707 ~~~~l~~~l~ 716 (767)
.|.-+..+-.
T Consensus 371 lWLRlAEcCi 380 (696)
T KOG2471|consen 371 LWLRLAECCI 380 (696)
T ss_pred HHHHHHHHHH
Confidence 8887766544
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.6 Score=46.45 Aligned_cols=120 Identities=18% Similarity=0.209 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHH----HHHH---hcCCHHHHHHHHHHHHHCCCCCChh----hHHHHHH--HHHh
Q 047305 477 IHKAYKILMQLAESGNLPDIITYNSLI----NGFC---KVGNINGALKLFKELQLKGLRPDSV----TYGTLIN--GLQR 543 (767)
Q Consensus 477 ~~~A~~~~~~~~~~~~~~~~~~~~~l~----~~~~---~~g~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~--~~~~ 543 (767)
-++|+++++.+.+-.. -|...-|.+. .+|. .......-+.+-+-+.+.|+.|-.. .-|.|.+ .+..
T Consensus 396 dekalnLLk~il~ft~-yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLys 474 (549)
T PF07079_consen 396 DEKALNLLKLILQFTN-YDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYS 474 (549)
T ss_pred cHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHh
Confidence 5667777776655321 1333222221 1111 1122333333333444456554332 2233332 2345
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccch
Q 047305 544 VDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDES 603 (767)
Q Consensus 544 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 603 (767)
.|++.++.-+-.-+.+ +.|++.+|..++-++....++++|..++.+ .|++...+
T Consensus 475 qgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~----LP~n~~~~ 528 (549)
T PF07079_consen 475 QGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK----LPPNERMR 528 (549)
T ss_pred cccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh----CCCchhhH
Confidence 6777776655555554 567777777777777777777777776533 35555444
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.033 Score=48.24 Aligned_cols=94 Identities=13% Similarity=0.055 Sum_probs=63.9
Q ss_pred HHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHH
Q 047305 576 SCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEAL 655 (767)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 655 (767)
+.+.|++++|..-|..++...|.-+.-.. ...|.+.+.++.+.+.++.|+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~r------------------------------sIly~Nraaa~iKl~k~e~aI 154 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEER------------------------------SILYSNRAAALIKLRKWESAI 154 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHH------------------------------HHHHhhhHHHHHHhhhHHHHH
Confidence 45678888888888777777665443110 122666666777777777777
Q ss_pred HHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047305 656 NIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 700 (767)
.-..++++.+ |....++..-+.+|.+..++++|+.-|+++++..
T Consensus 155 ~dcsKaiel~-pty~kAl~RRAeayek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 155 EDCSKAIELN-PTYEKALERRAEAYEKMEKYEEALEDYKKILESD 198 (271)
T ss_pred HHHHhhHhcC-chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence 7777777776 5555566666777777777888888777777643
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.03 Score=49.74 Aligned_cols=34 Identities=29% Similarity=0.365 Sum_probs=23.5
Q ss_pred HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 047305 219 ADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLR 252 (767)
Q Consensus 219 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 252 (767)
-+-|++++++|...|+-||..++..+++.+.+.+
T Consensus 119 q~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 119 QECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 3556777777777777777777777777775544
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0011 Score=39.73 Aligned_cols=32 Identities=16% Similarity=0.247 Sum_probs=21.6
Q ss_pred HHHHHhccCCCccchHHHHHHHHhcCCHHHHH
Q 047305 589 WLQYLRDISGRDDESMKSIEEFLQKGEVENAI 620 (767)
Q Consensus 589 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 620 (767)
|+++++.+|+++.+++.++.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45666667777777777777777777766663
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.28 Score=50.68 Aligned_cols=80 Identities=16% Similarity=0.204 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHH
Q 047305 497 ITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWS 576 (767)
Q Consensus 497 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 576 (767)
.+...+..-+.+...+.-|.++|..|-+. ..++......+++++|..+.++..+ +.|+ +|......+
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~d--Vy~pyaqwL 814 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDD--VYMPYAQWL 814 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc--cccc--ccchHHHHh
Confidence 34444444444555566677777666321 2345556677888888888777654 2333 344455566
Q ss_pred HhcCChhHHHHHH
Q 047305 577 CRRRKFSLAFSLW 589 (767)
Q Consensus 577 ~~~g~~~~A~~~~ 589 (767)
+...++++|.+.|
T Consensus 815 AE~DrFeEAqkAf 827 (1081)
T KOG1538|consen 815 AENDRFEEAQKAF 827 (1081)
T ss_pred hhhhhHHHHHHHH
Confidence 6666666666554
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.091 Score=47.28 Aligned_cols=47 Identities=13% Similarity=0.037 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHcCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047305 477 IHKAYKILMQLAESGNLPDI----ITYNSLINGFCKVGNINGALKLFKELQL 524 (767)
Q Consensus 477 ~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 524 (767)
..++.+...+.... +.||. ..|.....+|...+++++|...+.+..+
T Consensus 9 i~ea~e~~a~t~~~-wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~ 59 (308)
T KOG1585|consen 9 ISEADEMTALTLTR-WKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASK 59 (308)
T ss_pred HHHHHHHHHHHhhc-cCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 34444444433322 45554 3455556777888888888887777764
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.034 Score=48.25 Aligned_cols=110 Identities=9% Similarity=-0.033 Sum_probs=76.4
Q ss_pred HHHHHHHHhccCCCccch---HHHHHHHHhcCCHHHHHHHHHH-hhhcCCCCCc----cchHHHHHHHhhcCCHHHHHHH
Q 047305 586 FSLWLQYLRDISGRDDES---MKSIEEFLQKGEVENAIQGLLE-MDFKLNDFQL----APYTIWLIGLCQDGQVKEALNI 657 (767)
Q Consensus 586 ~~~~~~~~~~~p~~~~~~---~~l~~~~~~~g~~~~A~~~~~~-~~~~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~ 657 (767)
....+++...+|....+. ..++..+...|++++|...+.. +.. |.+. .+-..|+.+....|.+|+|+.+
T Consensus 72 ~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~ 148 (207)
T COG2976 72 IAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKT 148 (207)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 333344444443333222 2456777788888888887776 322 2222 2345788889999999999999
Q ss_pred HHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047305 658 FSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 700 (767)
++...+.+ -.+.....-|+++...|+.++|+.-|+++++.+
T Consensus 149 L~t~~~~~--w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 149 LDTIKEES--WAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred Hhcccccc--HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 99987554 233446678999999999999999999999875
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.053 Score=51.65 Aligned_cols=226 Identities=14% Similarity=0.060 Sum_probs=139.4
Q ss_pred HhcCCHHHHHHHHHHHHHC--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC--CCCC---CHhhHHHHHHHHHhc
Q 047305 507 CKVGNINGALKLFKELQLK--GLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQN--GCTP---SPAVYKSLMTWSCRR 579 (767)
Q Consensus 507 ~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~l~~~~~~~ 579 (767)
....+.++|+..|.+...+ +..-...++..+..+.++.|.+++++.+--.-+.. .... --+.|..+.+.+.+.
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l 96 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL 96 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777776653 11112345667778888899888876543322211 1111 134555666667777
Q ss_pred CChhHHHHHHHHHHhccCCC-----ccchHHHHHHHHhcCCHHHHHHHHHH-hhhcCCCCC----ccchHHHHHHHhhcC
Q 047305 580 RKFSLAFSLWLQYLRDISGR-----DDESMKSIEEFLQKGEVENAIQGLLE-MDFKLNDFQ----LAPYTIWLIGLCQDG 649 (767)
Q Consensus 580 g~~~~A~~~~~~~~~~~p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~p~~----~~~~~~l~~~~~~~g 649 (767)
.++.+++.+-.-.+..-... ..+...++.++.-.+.++++++.|+. +......++ ..++..|+..|....
T Consensus 97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~ 176 (518)
T KOG1941|consen 97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK 176 (518)
T ss_pred HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence 77777777655555321111 13445678888888999999999888 332222222 346899999999999
Q ss_pred CHHHHHHHHHHHHH----cCCCCC-----hHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHH---HHHHHHh
Q 047305 650 QVKEALNIFSVLVE----CKAIVT-----PPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFIL-RPRVCN---YLLRSLL 716 (767)
Q Consensus 650 ~~~~A~~~~~~~~~----~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~---~l~~~l~ 716 (767)
++++|+-+..++.+ .+++.- .-+..+++-++...|.+-+|.++-+++.+..+.. |..+.. --++-.+
T Consensus 177 D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIy 256 (518)
T KOG1941|consen 177 DYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIY 256 (518)
T ss_pred hhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 99999999998854 222221 2245567778889999999999988876532222 222211 1223333
Q ss_pred hcCCccHHHHHHHHHHH
Q 047305 717 FSKDNKKVHAYHLLCRM 733 (767)
Q Consensus 717 ~~~~~~~~~a~~~~~~~ 733 (767)
+..|+ .+.|..-++..
T Consensus 257 R~~gd-~e~af~rYe~A 272 (518)
T KOG1941|consen 257 RSRGD-LERAFRRYEQA 272 (518)
T ss_pred Hhccc-HhHHHHHHHHH
Confidence 36776 67776666653
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.34 Score=48.10 Aligned_cols=173 Identities=13% Similarity=0.028 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 047305 413 VGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCT---AGLIHKAYKILMQLAE 489 (767)
Q Consensus 413 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 489 (767)
..+...++-+|....+|+..+++.+.+..-.. ........+-...+-++.+ .|+.++|.+++..+..
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~----------~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~ 210 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPT----------CDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLE 210 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCc----------cchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHh
Confidence 33444556678888888888888888852111 1122334445556666667 8999999999999766
Q ss_pred cCCCCCHhhHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH----HHHHHH--
Q 047305 490 SGNLPDIITYNSLINGFCK---------VGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREE----DAFRIF-- 554 (767)
Q Consensus 490 ~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~----~A~~~~-- 554 (767)
....++..+|..+++.|.. ....++|+..|.+.-+. .|+..+-..++..+...|... +..++-
T Consensus 211 ~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~ 288 (374)
T PF13281_consen 211 SDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVK 288 (374)
T ss_pred ccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHH
Confidence 6667788888877776642 12356677777766544 355443333333333344322 122222
Q ss_pred --HHhhhCC---CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccC
Q 047305 555 --GQMPQNG---CTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDIS 597 (767)
Q Consensus 555 --~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 597 (767)
..+.+.| -..+-..+..++.+..-.|++++|.+.++++.+..|
T Consensus 289 l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~ 336 (374)
T PF13281_consen 289 LSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKP 336 (374)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Confidence 1111222 123344555566666666777777777777766543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.058 Score=44.77 Aligned_cols=60 Identities=8% Similarity=0.070 Sum_probs=27.4
Q ss_pred HhcCCHHHHHHHHHHhhhCC--CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCcc
Q 047305 542 QRVDREEDAFRIFGQMPQNG--CTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDD 601 (767)
Q Consensus 542 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 601 (767)
.+.|++++|.+.|+.+...- -+-....-..++.+|.+.|++++|...+++.++.+|..+.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 34455555555555554321 0112233334444455555555555555555555554444
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.55 Score=48.66 Aligned_cols=81 Identities=11% Similarity=-0.008 Sum_probs=40.2
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 047305 602 ESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLC 681 (767)
Q Consensus 602 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 681 (767)
.....+.-+.+...+.-|.+++.++.. .-.+.......++|++|..+-++.-+. -+.+|.-.++-+.
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~----~~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF----KDDVYMPYAQWLA 815 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc----cccccchHHHHhh
Confidence 333333334444455555555555431 334555666677777777766655332 1234444444444
Q ss_pred hcCChhHHHHHHHH
Q 047305 682 KRGYLDLAMDVFLY 695 (767)
Q Consensus 682 ~~g~~~~A~~~~~~ 695 (767)
...++++|.+.|.+
T Consensus 816 E~DrFeEAqkAfhk 829 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHK 829 (1081)
T ss_pred hhhhHHHHHHHHHH
Confidence 44444444444433
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.22 Score=44.61 Aligned_cols=150 Identities=11% Similarity=0.061 Sum_probs=92.5
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhh----CCCCCCH-hhHHHHHHHHHhcC
Q 047305 506 FCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQ----NGCTPSP-AVYKSLMTWSCRRR 580 (767)
Q Consensus 506 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~-~~~~~l~~~~~~~g 580 (767)
+.-.+++++|.+++.+... .|.-..+++.|-..|-++.+ .|-+.|. .+|.....+| +.+
T Consensus 24 fgg~~k~eeAadl~~~Aan---------------~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~ 87 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERAAN---------------MYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKV 87 (288)
T ss_pred cCCCcchHHHHHHHHHHHH---------------HHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hcc
Confidence 3445578888888776542 23333344444443333322 2323332 3444444444 566
Q ss_pred ChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhc-CCHHHHHHHHH
Q 047305 581 KFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQD-GQVKEALNIFS 659 (767)
Q Consensus 581 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~ 659 (767)
++++|...+++++ ..|...|++..|.+. +..++.+|-.. .++++|+..|+
T Consensus 88 ~~~eAv~cL~~ai--------------eIyt~~Grf~~aAk~---------------~~~iaEiyEsdl~d~ekaI~~YE 138 (288)
T KOG1586|consen 88 DPEEAVNCLEKAI--------------EIYTDMGRFTMAAKH---------------HIEIAEIYESDLQDFEKAIAHYE 138 (288)
T ss_pred ChHHHHHHHHHHH--------------HHHHhhhHHHHHHhh---------------hhhHHHHHhhhHHHHHHHHHHHH
Confidence 8888888877764 667788888777433 44556666655 78888888888
Q ss_pred HHHHcC-----CCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047305 660 VLVECK-----AIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 660 ~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 700 (767)
.+-+.- ......++...++.-...|++.+|+.+|++..+..
T Consensus 139 ~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 139 QAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 875431 12223455566666678899999999999998765
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.69 Score=42.70 Aligned_cols=58 Identities=12% Similarity=0.082 Sum_probs=31.3
Q ss_pred HHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047305 422 GLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAES 490 (767)
Q Consensus 422 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 490 (767)
.-.+.|++++|.+.|+.+.... ...+....+...++-++.+.++++.|+...++....
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~-----------p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRH-----------PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcC-----------CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3455677777777777775211 111222344445555555666666666666555544
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.49 E-value=1.7 Score=47.02 Aligned_cols=177 Identities=21% Similarity=0.220 Sum_probs=95.9
Q ss_pred hHHHHHHHHhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHH----HhcCChhHHHHHHHHhhhCCCCCCHHHHHHHH
Q 047305 65 SNSAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGY----YKVGDCEKALESFGKMKEFDCQPDVYIYNAVL 140 (767)
Q Consensus 65 ~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll 140 (767)
....-+.++.+...+..|..+-..- ..++.+...+++.| .+.|++++|...|-+-... +.|. .++
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~-----~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi 404 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQ-----HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVI 404 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHH
Confidence 3344556666666666665554322 23444444444443 4567888887777654421 1222 234
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHh
Q 047305 141 NIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRAD 220 (767)
Q Consensus 141 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 220 (767)
.-+....+..+-..+++.+.+.|+ .+...-..|+.+|.+.++.++..+..+... .|.. ..-....+..+.+.+-.+
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~ 480 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLD 480 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHH
Confidence 444455555666666777777764 444555667778888887777666555443 2211 112344556666666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047305 221 EAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSF 264 (767)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 264 (767)
+|.-+-.+... +......++ -..+++++|.+.+..+
T Consensus 481 ~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 481 EAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 66655444432 223333333 3456777777777654
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.42 E-value=1.5 Score=45.64 Aligned_cols=186 Identities=10% Similarity=-0.013 Sum_probs=118.2
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHH
Q 047305 495 DIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMT 574 (767)
Q Consensus 495 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 574 (767)
+..+|...+.--...|+.+.+.-+|+...--- .-=...|...+.-....|+.+-|...+....+.-.+..+.+--.-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 44667777777778888888888888765210 00122344555555556888888877777766433333333222233
Q ss_pred HHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHH---HHHHHhhhcCCCCCccc----hHHHHHH-Hh
Q 047305 575 WSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAI---QGLLEMDFKLNDFQLAP----YTIWLIG-LC 646 (767)
Q Consensus 575 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~p~~~~~----~~~l~~~-~~ 646 (767)
.....|+++.|..+++.+.+..|....+...-+....+.|+.+.+. +.+..... ...+... +...++. +.
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~--~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE--GKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc--cccCcchhHHHHHHHHHHHHH
Confidence 3445679999999999988877777777777788888888888875 23222211 1222222 2223332 22
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 047305 647 QDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRG 684 (767)
Q Consensus 647 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 684 (767)
-.++.+.|..++.++.+.. +++...+..+.+.....+
T Consensus 453 i~~d~~~a~~~l~~~~~~~-~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 453 IREDADLARIILLEANDIL-PDCKVLYLELIRFELIQP 489 (577)
T ss_pred HhcCHHHHHHHHHHhhhcC-CccHHHHHHHHHHHHhCC
Confidence 3478899999999998875 788778888877766555
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0032 Score=37.76 Aligned_cols=32 Identities=13% Similarity=0.131 Sum_probs=18.8
Q ss_pred HHHHHHcCCCCChHhHHHHHHHHHhcCChhHHH
Q 047305 658 FSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAM 690 (767)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 690 (767)
|+++++.+ |.++.+|+.++.+|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45555555 555666666666666666666554
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.37 E-value=1.2 Score=44.32 Aligned_cols=346 Identities=16% Similarity=0.156 Sum_probs=150.6
Q ss_pred HHHhcCCChhHHHHHHHHhhhCCCCC----Chhh-HHHHHHHHhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHH--H
Q 047305 36 SVIMKTKNPQVGFRFFIWAAKRKRLR----SFAS-NSAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISG--Y 108 (767)
Q Consensus 36 ~~l~~~~~~~~a~~~f~~~~~~~~~~----~~~~-~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~--~ 108 (767)
-+|..+++...|-.+|.-+-...... .-++ -+.+++.+. ..+.+.+...+.+..+.. + ...|..+..+ +
T Consensus 14 f~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~-~--~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 14 FILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQF-G--KSAYLPLFKALVA 89 (549)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhc-C--CchHHHHHHHHHH
Confidence 35566777777777776553332211 1122 233444333 345566666666665543 1 2223333332 3
Q ss_pred HhcCChhHHHHHHHHhhhC--CCCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC----CCCHHH
Q 047305 109 YKVGDCEKALESFGKMKEF--DCQPD------------VYIYNAVLNIAFRKQLFLLALAVYYEMVKLNC----LPNIVT 170 (767)
Q Consensus 109 ~~~~~~~~A~~~~~~~~~~--~~~~~------------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~ 170 (767)
.+.+.+.+|++.+..-... +..+. ..--+..+.++...|++.+++.+++++...=+ ..+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 3567777777777655432 11111 11123344555566666666666655554322 255666
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047305 171 FSLLINGLSKSGKTEVAIKMLDEMTQR---GILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNG 247 (767)
Q Consensus 171 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 247 (767)
|+.++-.+++. .|-++.+. ++-| . |--++-.|.+. ...++.-.-..+-|.......++..
T Consensus 170 yd~~vlmlsrS--------YfLEl~e~~s~dl~p--d-yYemilfY~kk------i~~~d~~~Y~k~~peeeL~s~imqh 232 (549)
T PF07079_consen 170 YDRAVLMLSRS--------YFLELKESMSSDLYP--D-YYEMILFYLKK------IHAFDQRPYEKFIPEEELFSTIMQH 232 (549)
T ss_pred HHHHHHHHhHH--------HHHHHHHhcccccCh--H-HHHHHHHHHHH------HHHHhhchHHhhCcHHHHHHHHHHH
Confidence 66554444322 22222111 1111 1 11111111110 0000000000122333333333333
Q ss_pred HHh--cCCHHHHHHHHHHHHhCCCCCCcc-cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHh
Q 047305 248 FCK--LRRVDEALALLRSFEKDGFVPRLG-SYSCLIDGLFRAKRYDEAYAWYRKMFEEKIE----PDVVLYGVMIRGLSE 320 (767)
Q Consensus 248 ~~~--~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~l~~~~~~ 320 (767)
..- ..+..--+++++.....-+.|+-. +...++..+.. +.+++..+.+.+....+. .-..++..++....+
T Consensus 233 lfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk 310 (549)
T PF07079_consen 233 LFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVK 310 (549)
T ss_pred HHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 321 112222333333333333344422 22333333333 455555555554433211 123467778888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH---H
Q 047305 321 AGKVKDAMKLLSDMRERGIVPDTYCY-------NALIKGFCD----LGLLDQARSLQVEIWKRDSLPNTHTFTILI---C 386 (767)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~ 386 (767)
.++...|-+.+.-+.... |+...- ..+....+. .-+...-..+|+.+...++. .......|+ .
T Consensus 311 ~~~T~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak 387 (549)
T PF07079_consen 311 QVQTEEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAK 387 (549)
T ss_pred HHhHHHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHH
Confidence 888888888887766543 222111 111111221 11233334455555554431 112222222 2
Q ss_pred HHHhcCC-HHHHHHHHHHHHHc
Q 047305 387 GMCRNGM-VDDAQKLFNKMEKA 407 (767)
Q Consensus 387 ~~~~~g~-~~~A~~~~~~~~~~ 407 (767)
-+-+.|. -++|+.+++.+.+.
T Consensus 388 ~lW~~g~~dekalnLLk~il~f 409 (549)
T PF07079_consen 388 HLWEIGQCDEKALNLLKLILQF 409 (549)
T ss_pred HHHhcCCccHHHHHHHHHHHHh
Confidence 2334454 78888888888764
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.48 Score=42.91 Aligned_cols=207 Identities=13% Similarity=0.089 Sum_probs=107.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 047305 463 SLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQ 542 (767)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 542 (767)
.|.....+|...+++++|...+.+..+. ...+...|. ..+.++.|.-+.+++... .--...|......|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 3444566777788888888887777532 121222221 123345555555555443 111223455556677
Q ss_pred hcCCHHHHHHHHHHhhhC--CCCCC--HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHH
Q 047305 543 RVDREEDAFRIFGQMPQN--GCTPS--PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVEN 618 (767)
Q Consensus 543 ~~~~~~~A~~~~~~~~~~--~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 618 (767)
..|..+.|-..++++-+. +..|+ ...|..-+.+....++...|.+++. ..+.++.+..++++
T Consensus 103 E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~g--------------k~sr~lVrl~kf~E 168 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYG--------------KCSRVLVRLEKFTE 168 (308)
T ss_pred HhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHH--------------HhhhHhhhhHHhhH
Confidence 777777666666655331 22332 1233333333333333333433332 23566677777777
Q ss_pred HHHHHHHh---hhc--CCCCCccchHHHHHHHhhcCCHHHHHHHHHHHH---HcCCCCChHhHHHHHHHHHhcCChhHHH
Q 047305 619 AIQGLLEM---DFK--LNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLV---ECKAIVTPPSCVKLIHGLCKRGYLDLAM 690 (767)
Q Consensus 619 A~~~~~~~---~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 690 (767)
|...+.+. ..+ .-|.-...+...+-+|....+|..|...++.-- ...-+.+..+...|..+| ..|+.+++.
T Consensus 169 aa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~ 247 (308)
T KOG1585|consen 169 AATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIK 247 (308)
T ss_pred HHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHH
Confidence 75555552 111 112222336666667777789999999888843 222233344444455443 556666666
Q ss_pred HHHH
Q 047305 691 DVFL 694 (767)
Q Consensus 691 ~~~~ 694 (767)
.++.
T Consensus 248 kvl~ 251 (308)
T KOG1585|consen 248 KVLS 251 (308)
T ss_pred HHHc
Confidence 6554
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.16 Score=53.23 Aligned_cols=120 Identities=18% Similarity=0.058 Sum_probs=91.3
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcC--C-CCChHhHHHHHHHHHhcCChhHH
Q 047305 613 KGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECK--A-IVTPPSCVKLIHGLCKRGYLDLA 689 (767)
Q Consensus 613 ~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~g~~~~A 689 (767)
..+.+.|.+.+..+... .|++.-.+..-++.+...|+.++|++.|+++.... . .-..-++..+++++....+|++|
T Consensus 246 ~~~~~~a~~lL~~~~~~-yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR-YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 45667787777775433 58888878888889999999999999999876311 1 22345678899999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccH-------HHHHHHHHHHHH
Q 047305 690 MDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKK-------VHAYHLLCRMKS 735 (767)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-------~~a~~~~~~~~~ 735 (767)
...|.++.+.+ .=...++.|+.++.+...|+ . ++|.+++++.+.
T Consensus 325 ~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~-~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 325 AEYFLRLLKES-KWSKAFYAYLAAACLLMLGR-EEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHhcc-ccHHHHHHHHHHHHHHhhcc-chhhhhhHHHHHHHHHHHHH
Confidence 99999998753 22456677777776656676 5 889999998773
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.23 E-value=1.4 Score=43.41 Aligned_cols=107 Identities=16% Similarity=0.159 Sum_probs=58.5
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047305 275 SYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFC 354 (767)
Q Consensus 275 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 354 (767)
+.+..|.-+...|+...|.++-.+.. -|+..-|-..+.+++..++|++..++-.. . -++.-|..++..|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 33444555556666666665554443 34666666666666666666665554321 1 13345556666666
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047305 355 DLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLF 401 (767)
Q Consensus 355 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 401 (767)
+.|...+|..+...+ + +..-+..|.+.|++.+|.+.-
T Consensus 249 ~~~~~~eA~~yI~k~------~----~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI------P----DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HCCCHHHHHHHHHhC------C----hHHHHHHHHHCCCHHHHHHHH
Confidence 666666666554441 1 133455566666666665543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.28 Score=49.46 Aligned_cols=75 Identities=11% Similarity=0.003 Sum_probs=50.4
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCC--ccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccch
Q 047305 564 PSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGR--DDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPY 638 (767)
Q Consensus 564 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~ 638 (767)
+-..+-..+..++.+.|+.++|++.+.++++.+|.. -.+..+++.++...+.+.++...+.+-+...-|.++...
T Consensus 257 ~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~ 333 (539)
T PF04184_consen 257 VLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATIC 333 (539)
T ss_pred hhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHH
Confidence 334444566777778888888888888888777653 335567888888888888887777665433335555433
|
The molecular function of this protein is uncertain. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.022 Score=48.87 Aligned_cols=32 Identities=13% Similarity=-0.134 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHhccCCCccchHHHHHHHHhc
Q 047305 582 FSLAFSLWLQYLRDISGRDDESMKSIEEFLQK 613 (767)
Q Consensus 582 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 613 (767)
++.|++.++.....+|.+.+.++..+.++.+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLEL 38 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLEL 38 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHH
Confidence 46677777777788888888877766665543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.68 Score=37.45 Aligned_cols=63 Identities=19% Similarity=0.208 Sum_probs=41.3
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 047305 639 TIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFI 702 (767)
Q Consensus 639 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 702 (767)
.....++..+|+-+.-.+++..+.+.+ .++|..+..++.+|.+.|+..+|.+++.++-++|++
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 334445667777777777777776544 778888888888888888888888888888877743
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.062 Score=53.16 Aligned_cols=120 Identities=13% Similarity=0.014 Sum_probs=66.5
Q ss_pred hcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHH
Q 047305 578 RRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNI 657 (767)
Q Consensus 578 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 657 (767)
..|+.-.|.+-...+++..|.+|......+......|+++.+...+...+......+.. ...+.+.....|++++|..+
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~-~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDST-LRCRLRSLHGLARWREALST 379 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchH-HHHHHHhhhchhhHHHHHHH
Confidence 45666666655566666666666666555666666666666655555543322222222 55555666666666666666
Q ss_pred HHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047305 658 FSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 699 (767)
-..|+... -.++.+...-+-.--..|-++++..+|++....
T Consensus 380 a~~~l~~e-ie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 380 AEMMLSNE-IEDEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHhccc-cCChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 66665443 334444333333344455666666666666543
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.052 Score=51.23 Aligned_cols=113 Identities=11% Similarity=0.058 Sum_probs=79.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCH
Q 047305 572 LMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQV 651 (767)
Q Consensus 572 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 651 (767)
-+.-|.++|++++|+..|.+.+...|.++..+.+.+.+|.+...+..|...-... ...+....-+|...+.+-...|+.
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A-iaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAA-IALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHH-HHhhHHHHHHHHHHHHHHHHHhhH
Confidence 4556888999999999999999999999999999999999988888775444431 112233445677777777777888
Q ss_pred HHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHH
Q 047305 652 KEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAM 690 (767)
Q Consensus 652 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 690 (767)
.+|.+-++.+++.. |.+ ..|-..+.+.....++.
T Consensus 182 ~EAKkD~E~vL~LE-P~~----~ELkK~~a~i~Sl~E~~ 215 (536)
T KOG4648|consen 182 MEAKKDCETVLALE-PKN----IELKKSLARINSLRERK 215 (536)
T ss_pred HHHHHhHHHHHhhC-ccc----HHHHHHHHHhcchHhhh
Confidence 88888888888764 332 23444555555444443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.11 Score=44.90 Aligned_cols=56 Identities=14% Similarity=0.252 Sum_probs=26.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 047305 138 AVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEM 194 (767)
Q Consensus 138 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 194 (767)
.++..+...|+++.|...+..+.... |.+...|..+|.+|...|+...|.+.|+.+
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 34444444555555555555555443 334445555555555555555555555443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.70 E-value=3.2 Score=43.27 Aligned_cols=224 Identities=12% Similarity=0.008 Sum_probs=143.4
Q ss_pred cCCHHHHHHHHHHHHHC---CCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCC
Q 047305 509 VGNINGALKLFKELQLK---GLRPD----SVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRK 581 (767)
Q Consensus 509 ~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 581 (767)
.....+....++.-+.. .++|. ..+|...+..-...|+.+.+.-+|+++.-- +..=...|-..+......|+
T Consensus 268 s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~ 346 (577)
T KOG1258|consen 268 SEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGD 346 (577)
T ss_pred hHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCc
Confidence 33444455555555543 22332 356777788888999999999999998631 22335566677777777899
Q ss_pred hhHHHHHHHHHHhccCCCccch-HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHH---HH
Q 047305 582 FSLAFSLWLQYLRDISGRDDES-MKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEAL---NI 657 (767)
Q Consensus 582 ~~~A~~~~~~~~~~~p~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~---~~ 657 (767)
.+-|..++....+......... ..-+..--..|++..|...++.+.... |....+-..-+....+.|+.+.+- ++
T Consensus 347 ~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l 425 (577)
T KOG1258|consen 347 VSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNEL 425 (577)
T ss_pred hhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHH
Confidence 9999998888877654444444 344444556889999999999987776 777666666667778889999888 55
Q ss_pred HHHHHHcCCCCChHh----HHHHHHH-HHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhhcC-CccHHHHHHHH
Q 047305 658 FSVLVECKAIVTPPS----CVKLIHG-LCKRGYLDLAMDVFLYTLKNGFILR-PRVCNYLLRSLLFSK-DNKKVHAYHLL 730 (767)
Q Consensus 658 ~~~~~~~~~~~~~~~----~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~-~~~~~~a~~~~ 730 (767)
+....+- ..+..+ +..+++. +.-.++.+.|..++.++... -|+ -..+..++.....+. +...+-...++
T Consensus 426 ~s~~~~~--~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~--~~~~k~~~~~~~~~~~~~~~~~e~d~~e~~~ 501 (577)
T KOG1258|consen 426 YSSIYEG--KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI--LPDCKVLYLELIRFELIQPSGREYDLLEPID 501 (577)
T ss_pred HHHhccc--ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc--CCccHHHHHHHHHHHHhCCcchhhhhhhhHH
Confidence 5554432 233333 2333333 44578899999999999764 344 444555666555333 22234444455
Q ss_pred HHHHHcCC
Q 047305 731 CRMKSVGY 738 (767)
Q Consensus 731 ~~~~~~~~ 738 (767)
..+.....
T Consensus 502 ~~~~~~~~ 509 (577)
T KOG1258|consen 502 WKELKMLI 509 (577)
T ss_pred HHHHhhhc
Confidence 55444333
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.53 Score=40.13 Aligned_cols=130 Identities=12% Similarity=0.162 Sum_probs=71.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHh-hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccc----hHHHH
Q 047305 533 TYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPA-VYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDE----SMKSI 607 (767)
Q Consensus 533 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~----~~~l~ 607 (767)
.|...+. +...++.++|+.-|..+.+.|...-+. ..........+.|+-..|...|+++-+..|..... ....+
T Consensus 61 ~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa 139 (221)
T COG4649 61 AFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAA 139 (221)
T ss_pred HHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHH
Confidence 3443333 344556666777776666554332221 11122333456666677777766665443332222 22335
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHH
Q 047305 608 EEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVE 663 (767)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 663 (767)
..+...|-++.....++-+....+|-...+-..|+-+-.+.|++.+|..+|+.+.+
T Consensus 140 ~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 140 YLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 55666777776666666665544555555566666666777777777777777654
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.57 E-value=4.5 Score=43.96 Aligned_cols=140 Identities=17% Similarity=0.262 Sum_probs=66.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 047305 281 DGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLD 360 (767)
Q Consensus 281 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 360 (767)
.-+.+.|++++|...|-+-+.. ++| ..++.-|.......+...+++.+.+.|+. +...-..|+.+|.+.++.+
T Consensus 376 d~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~ 448 (933)
T KOG2114|consen 376 DYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVE 448 (933)
T ss_pred HHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchH
Confidence 3344556666665555443321 111 12334444555555555666666666554 4444455666666666666
Q ss_pred HHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 047305 361 QARSLQVEIWKRDS-LPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKM 439 (767)
Q Consensus 361 ~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 439 (767)
+..+..+..- .|. ..| ....+..+.+.+-.++|..+-.+... +......+ +-..+++++|++.+..+
T Consensus 449 kL~efI~~~~-~g~~~fd---~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 449 KLTEFISKCD-KGEWFFD---VETALEILRKSNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcCC-Ccceeee---HHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 5554443322 111 011 22334444455555555554444332 22222222 33446666776666655
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.55 E-value=1.3 Score=37.81 Aligned_cols=138 Identities=13% Similarity=0.027 Sum_probs=99.3
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccch--HHHHHHHHhcCCHHHHHHHHHHhhhc-CCCCCc--cchH
Q 047305 565 SPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDES--MKSIEEFLQKGEVENAIQGLLEMDFK-LNDFQL--APYT 639 (767)
Q Consensus 565 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~-~~p~~~--~~~~ 639 (767)
....|...++ +.+.++.++|...|..+-+..-..-.++ ...+....+.|+...|+..|.++... ..|.-. .+-.
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 4455555555 4577889999999999887655554444 45678888999999999999996432 122211 1233
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 047305 640 IWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFIL 703 (767)
Q Consensus 640 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 703 (767)
.-++.+...|.|++...-.+.+..-+.+-.......|+-+-.+.|++.+|...|+.+......|
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 4455677889999999888887654445566677889999999999999999999887654333
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.53 E-value=1.4 Score=39.24 Aligned_cols=60 Identities=17% Similarity=0.174 Sum_probs=33.8
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHH
Q 047305 566 PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLE 625 (767)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 625 (767)
+.+|+.+.--+...|+++.|.+.|+..++.+|...-+..+.+-.+.--|++.-|.+.+.+
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~ 158 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLA 158 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHH
Confidence 345555555555556666666666666666665555555555555555555555555555
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.53 E-value=3.8 Score=46.34 Aligned_cols=24 Identities=4% Similarity=0.324 Sum_probs=11.8
Q ss_pred HHHHHHHHhcC--CHHHHHHHHHHHH
Q 047305 382 TILICGMCRNG--MVDDAQKLFNKME 405 (767)
Q Consensus 382 ~~l~~~~~~~g--~~~~A~~~~~~~~ 405 (767)
..++..|.+.+ ..+.|+....+..
T Consensus 794 ~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 794 LFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 34455555555 4445554444444
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.50 E-value=2.6 Score=40.92 Aligned_cols=152 Identities=15% Similarity=0.102 Sum_probs=90.5
Q ss_pred HhcCCHHHHHHHHHHHHHcC--CCCCH------hhHHHHHHHHHhcC-CHHHHHHHHHHHHHC--------CCCCCh---
Q 047305 472 CTAGLIHKAYKILMQLAESG--NLPDI------ITYNSLINGFCKVG-NINGALKLFKELQLK--------GLRPDS--- 531 (767)
Q Consensus 472 ~~~g~~~~A~~~~~~~~~~~--~~~~~------~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~--------~~~p~~--- 531 (767)
.+.|+.+.|..++.++.... ..|+. ..|+.-.. ....+ +++.|...+++..+. ...|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~-l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKS-LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46788999999998876543 12222 12333333 33555 888888887776543 122332
Q ss_pred --hhHHHHHHHHHhcCCHH---HHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHH
Q 047305 532 --VTYGTLINGLQRVDREE---DAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKS 606 (767)
Q Consensus 532 --~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 606 (767)
.++..++.+|...+..+ +|..+++.+... .+..+.++..-++++.+.++.+++.+.+.+|+...+.....+...
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~ 161 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHH
Confidence 35667777887776654 466666666443 233455665666777778889999999999998766444444433
Q ss_pred HHHHHh--cCCHHHHHHHHHH
Q 047305 607 IEEFLQ--KGEVENAIQGLLE 625 (767)
Q Consensus 607 ~~~~~~--~g~~~~A~~~~~~ 625 (767)
...+.. ......|...+..
T Consensus 162 l~~i~~l~~~~~~~a~~~ld~ 182 (278)
T PF08631_consen 162 LHHIKQLAEKSPELAAFCLDY 182 (278)
T ss_pred HHHHHHHHhhCcHHHHHHHHH
Confidence 333321 2223344455555
|
It is also involved in sporulation []. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.048 Score=51.46 Aligned_cols=150 Identities=9% Similarity=-0.056 Sum_probs=95.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCC
Q 047305 537 LINGLQRVDREEDAFRIFGQMPQNGCTP-SPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGE 615 (767)
Q Consensus 537 l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 615 (767)
-.+.|.+.|++++|+..|...+.. .| ++.++..-..+|.+.+++..|..-...++..+.....+|...+.+-...|+
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 356788899999999999888764 44 777777777888999999999988888888777667777777777777888
Q ss_pred HHHHHHHHHH-hhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC-hHh-----HHHHHHHHHhcCChhH
Q 047305 616 VENAIQGLLE-MDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVT-PPS-----CVKLIHGLCKRGYLDL 688 (767)
Q Consensus 616 ~~~A~~~~~~-~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~-----~~~l~~~~~~~g~~~~ 688 (767)
..+|-+..+. +. ..|.+.. |-..|.......++.-+. +... |..|- -.. .-.-|..+.+.|+++.
T Consensus 181 ~~EAKkD~E~vL~--LEP~~~E----LkK~~a~i~Sl~E~~I~~-KsT~-G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~~ 252 (536)
T KOG4648|consen 181 NMEAKKDCETVLA--LEPKNIE----LKKSLARINSLRERKIAT-KSTP-GFTPARQGMIQILPIKKPGYKFSKKAMRSV 252 (536)
T ss_pred HHHHHHhHHHHHh--hCcccHH----HHHHHHHhcchHhhhHHh-hcCC-CCCccccchhhhccccCcchhhhhhhcccc
Confidence 8888777666 33 3466443 334444444443332221 1110 11110 001 1112445667777777
Q ss_pred HHHHHHHH
Q 047305 689 AMDVFLYT 696 (767)
Q Consensus 689 A~~~~~~~ 696 (767)
++..+-+-
T Consensus 253 ~i~~~~~~ 260 (536)
T KOG4648|consen 253 PVVDVVSP 260 (536)
T ss_pred ceeEeecc
Confidence 77666544
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.66 Score=40.62 Aligned_cols=129 Identities=15% Similarity=0.113 Sum_probs=82.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHH--HHHHHHHhcCChhHHHHHHHHHHhccCCCc---cchHHHH
Q 047305 533 TYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYK--SLMTWSCRRRKFSLAFSLWLQYLRDISGRD---DESMKSI 607 (767)
Q Consensus 533 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~ 607 (767)
.|..++.+.. .+.. +.....+++...+....-.++. .+...+..+|++++|...++..+..-.+.. .+-..++
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLA 133 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLA 133 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHH
Confidence 3444444443 2333 4445555555432121111222 234457788999999998888774422221 2334678
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 047305 608 EEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECK 665 (767)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 665 (767)
.+..+.|++++|+..+.....+ ...+......|.++...|+-++|..-|+++++.+
T Consensus 134 rvq~q~~k~D~AL~~L~t~~~~--~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 134 RVQLQQKKADAALKTLDTIKEE--SWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHhhhHHHHHHHHhccccc--cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 9999999999998888775422 2334446678999999999999999999999875
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.26 E-value=1.8 Score=44.07 Aligned_cols=151 Identities=13% Similarity=0.025 Sum_probs=90.6
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 047305 508 KVGNINGALKLFKELQLKGLRPDS-VTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAF 586 (767)
Q Consensus 508 ~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 586 (767)
+..+++.-+++-.++.+. .|+- ..|..|. --.+....+|.+++++.++.|- ..+..-- .....|..-+
T Consensus 180 RERnp~aRIkaA~eALei--~pdCAdAYILLA--EEeA~Ti~Eae~l~rqAvkAgE----~~lg~s~-~~~~~g~~~e-- 248 (539)
T PF04184_consen 180 RERNPQARIKAAKEALEI--NPDCADAYILLA--EEEASTIVEAEELLRQAVKAGE----ASLGKSQ-FLQHHGHFWE-- 248 (539)
T ss_pred hcCCHHHHHHHHHHHHHh--hhhhhHHHhhcc--cccccCHHHHHHHHHHHHHHHH----Hhhchhh-hhhcccchhh--
Confidence 555666666666666654 4443 2333332 2234557889999988876431 0110000 0001111111
Q ss_pred HHHHHHHhccCCCccch--HHHHHHHHhcCCHHHHHHHHHHhhhcCCC-CCccchHHHHHHHhhcCCHHHHHHHHHHHHH
Q 047305 587 SLWLQYLRDISGRDDES--MKSIEEFLQKGEVENAIQGLLEMDFKLND-FQLAPYTIWLIGLCQDGQVKEALNIFSVLVE 663 (767)
Q Consensus 587 ~~~~~~~~~~p~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 663 (767)
.....+.++..+ ..++.+..+.|+.++|++.+.++-....+ ++..+..+|+.++...+.+.++..++.+-.+
T Consensus 249 -----~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 249 -----AWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred -----hhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 111112223233 46788899999999999999996433223 3555788999999999999999999999876
Q ss_pred cCCCCChHhHH
Q 047305 664 CKAIVTPPSCV 674 (767)
Q Consensus 664 ~~~~~~~~~~~ 674 (767)
...|++....+
T Consensus 324 i~lpkSAti~Y 334 (539)
T PF04184_consen 324 ISLPKSATICY 334 (539)
T ss_pred ccCCchHHHHH
Confidence 66566555433
|
The molecular function of this protein is uncertain. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.16 Score=44.20 Aligned_cols=88 Identities=14% Similarity=0.155 Sum_probs=63.2
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCC-----HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhc
Q 047305 539 NGLQRVDREEDAFRIFGQMPQNGCTPS-----PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQK 613 (767)
Q Consensus 539 ~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 613 (767)
+-+.+.|++++|..-|..+++. +++. ...|..-..++.+.++++.|+.-..++++.+|.+..++...+.+|.+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 3456678888888888887764 2332 334444455677888888888888888888888877777777777777
Q ss_pred CCHHHHHHHHHHhh
Q 047305 614 GEVENAIQGLLEMD 627 (767)
Q Consensus 614 g~~~~A~~~~~~~~ 627 (767)
.++++|++.+.++.
T Consensus 182 ek~eealeDyKki~ 195 (271)
T KOG4234|consen 182 EKYEEALEDYKKIL 195 (271)
T ss_pred hhHHHHHHHHHHHH
Confidence 77777777777743
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.14 E-value=3.5 Score=40.12 Aligned_cols=163 Identities=13% Similarity=0.101 Sum_probs=101.7
Q ss_pred HhcCCHHHHHHHHHHHHHCC--CCCChh------hHHHHHHHHHhcC-CHHHHHHHHHHhhhC--------CCCCC----
Q 047305 507 CKVGNINGALKLFKELQLKG--LRPDSV------TYGTLINGLQRVD-REEDAFRIFGQMPQN--------GCTPS---- 565 (767)
Q Consensus 507 ~~~g~~~~A~~~~~~~~~~~--~~p~~~------~~~~l~~~~~~~~-~~~~A~~~~~~~~~~--------~~~~~---- 565 (767)
.+.|+.+.|..++.+..... ..|+.. .|+.-.. ....+ +++.|...+++..+. ...++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~-l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKS-LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHH-HHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46789999999999887642 233322 2333233 34455 888887777776442 11222
Q ss_pred -HhhHHHHHHHHHhcCCh---hHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHH
Q 047305 566 -PAVYKSLMTWSCRRRKF---SLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIW 641 (767)
Q Consensus 566 -~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l 641 (767)
..++..++.+|...+.. ++|..+.+.+....|+.+..+.....+..+.++.+++.+.+.++-.... .....+...
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~-~~e~~~~~~ 161 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD-HSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc-cccchHHHH
Confidence 34566777777776654 4566666677778888888887777777778899999888888644322 122335555
Q ss_pred HHHHh--hcCCHHHHHHHHHHHHHcCCCCChH
Q 047305 642 LIGLC--QDGQVKEALNIFSVLVECKAIVTPP 671 (767)
Q Consensus 642 ~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~ 671 (767)
+..+. .......|...++.++-..+.+...
T Consensus 162 l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 162 LHHIKQLAEKSPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHHhCCChh
Confidence 55552 2244567777777775443455443
|
It is also involved in sporulation []. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.07 E-value=4.2 Score=40.70 Aligned_cols=81 Identities=10% Similarity=0.080 Sum_probs=51.9
Q ss_pred CcCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 047305 95 SVVSDVFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLL 174 (767)
Q Consensus 95 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 174 (767)
|.+...|..|+.-|..+|.+++..+++++|.. .++--..+|..-++.-....++.....+|.+-+... .+...|..-
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~-pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldLW~lY 115 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSS-PFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDLWMLY 115 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcC-CCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhHHHHH
Confidence 55667777888888888888888888877764 233444566666666666677777777776666543 334455544
Q ss_pred HHHH
Q 047305 175 INGL 178 (767)
Q Consensus 175 ~~~~ 178 (767)
+.--
T Consensus 116 l~YI 119 (660)
T COG5107 116 LEYI 119 (660)
T ss_pred HHHH
Confidence 4433
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.04 Score=33.60 Aligned_cols=25 Identities=12% Similarity=0.078 Sum_probs=15.0
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHH
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLV 662 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~ 662 (767)
|..|+.+|.+.|++++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566666666666666666666643
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.036 Score=33.22 Aligned_cols=27 Identities=22% Similarity=0.222 Sum_probs=13.5
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVEC 664 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 664 (767)
|..++.+|...|++++|++.|+++++.
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 444555555555555555555555444
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.25 Score=44.51 Aligned_cols=82 Identities=15% Similarity=0.035 Sum_probs=38.8
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCHh-hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHH
Q 047305 542 QRVDREEDAFRIFGQMPQNGCTPSPA-VYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAI 620 (767)
Q Consensus 542 ~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 620 (767)
....+++.|+..|.+.+. +.|+.. .|..=+.++.+.++++.+..-..++++..|+.....+.++........+++|+
T Consensus 21 f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 21 FIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred cchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHH
Confidence 333444555554444443 233332 22233334444555555555555555555555555555555555555555555
Q ss_pred HHHHH
Q 047305 621 QGLLE 625 (767)
Q Consensus 621 ~~~~~ 625 (767)
..+.+
T Consensus 99 ~~Lqr 103 (284)
T KOG4642|consen 99 KVLQR 103 (284)
T ss_pred HHHHH
Confidence 55544
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.94 E-value=6.5 Score=42.22 Aligned_cols=111 Identities=15% Similarity=0.216 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047305 309 VLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGM 388 (767)
Q Consensus 309 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 388 (767)
-+.+--+.-+...|+-.+|.++-.+.+ -||...|..-+.+++..+++++-+++-+... ++.-|..+...|
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c 754 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEAC 754 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHH
Confidence 344445555666777777777666543 3466777777777777777777665433321 134566777788
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047305 389 CRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYK 438 (767)
Q Consensus 389 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 438 (767)
.+.|+.++|.+++.+.... . ....+|.+.|++.+|.++--+
T Consensus 755 ~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHHHH
Confidence 8888888888877654321 1 456677778888887776544
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.14 Score=48.38 Aligned_cols=61 Identities=15% Similarity=0.234 Sum_probs=30.4
Q ss_pred hhHHHHHHHHhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 047305 64 ASNSAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESFGKMK 125 (767)
Q Consensus 64 ~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 125 (767)
.++..++..+...++++.+...++++.... |-+...|..+|.+|.+.|+...|+..|+++.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 344444444445555555555555554443 3444455555555555555555555554443
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.58 Score=38.58 Aligned_cols=52 Identities=13% Similarity=0.160 Sum_probs=41.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHH
Q 047305 373 DSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKA-GCFPSVGMFNALIDGLC 424 (767)
Q Consensus 373 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 424 (767)
...|+..+..+++.+|+..|++..|+++++.+.+. +++.+...|..|+.-..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34588899999999999999999999999988664 56666788888886543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.08 Score=31.63 Aligned_cols=33 Identities=9% Similarity=-0.021 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCC
Q 047305 567 AVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGR 599 (767)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 599 (767)
..+..+..++.+.|++++|++.|+++++..|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 345566777777888888888888887777754
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.68 E-value=3.3 Score=37.56 Aligned_cols=94 Identities=14% Similarity=0.102 Sum_probs=47.6
Q ss_pred hcCCHHHHHHHHHHHHHC----C-CCCChhhHHHHHHHHHhc-CCHHHHHHHHHHhhhC--CCCCCHhhHHHHHHH---H
Q 047305 508 KVGNINGALKLFKELQLK----G-LRPDSVTYGTLINGLQRV-DREEDAFRIFGQMPQN--GCTPSPAVYKSLMTW---S 576 (767)
Q Consensus 508 ~~g~~~~A~~~~~~~~~~----~-~~p~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~---~ 576 (767)
+.+++++|...++..++. | +..-......+...|-.. .++++|+..|++.-+. |-..+...-.+++.+ -
T Consensus 85 kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ya 164 (288)
T KOG1586|consen 85 KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYA 164 (288)
T ss_pred hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHH
Confidence 334666666655544431 1 000111222344444332 5667777777776552 223333333344333 4
Q ss_pred HhcCChhHHHHHHHHHHhccCCCcc
Q 047305 577 CRRRKFSLAFSLWLQYLRDISGRDD 601 (767)
Q Consensus 577 ~~~g~~~~A~~~~~~~~~~~p~~~~ 601 (767)
...+++.+|+.+|+++.+..-+++.
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~L 189 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNL 189 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchH
Confidence 5667888888888887765444443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.66 E-value=2.2 Score=36.35 Aligned_cols=82 Identities=18% Similarity=0.039 Sum_probs=35.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 047305 350 IKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGEL 429 (767)
Q Consensus 350 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 429 (767)
+..+...+........++.+...+. .+...++.++..|++.+ ..+....++. . .+.......+..|.+.+.+
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHHcCcH
Confidence 3333334444555555555444432 34444555555554432 2222233221 1 1222223344555555555
Q ss_pred HHHHHHHHHh
Q 047305 430 EKANLLFYKM 439 (767)
Q Consensus 430 ~~A~~~~~~~ 439 (767)
+++..++.++
T Consensus 86 ~~~~~l~~k~ 95 (140)
T smart00299 86 EEAVELYKKD 95 (140)
T ss_pred HHHHHHHHhh
Confidence 5555555544
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.072 Score=32.44 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=23.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 672 SCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 672 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
++..|+.+|.+.|++++|+++|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467899999999999999999999654
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.64 Score=38.37 Aligned_cols=98 Identities=11% Similarity=0.084 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047305 238 FVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRG 317 (767)
Q Consensus 238 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 317 (767)
..++..++.++++.|+.+....+++..= |+..+... ..+. --......|+..+..+++.+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~s 61 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVHS 61 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHHH
Confidence 4566667777777777777766665442 22211100 0000 11123456888888888888
Q ss_pred HHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHh
Q 047305 318 LSEAGKVKDAMKLLSDMRER-GIVPDTYCYNALIKGFCD 355 (767)
Q Consensus 318 ~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 355 (767)
|+.+|++..|+++++...+. +++.+..+|..|++....
T Consensus 62 f~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 62 FGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 88888888888888887665 666677888888776543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.094 Score=31.38 Aligned_cols=27 Identities=26% Similarity=0.217 Sum_probs=13.8
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVEC 664 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 664 (767)
|..+|.+|...|++++|+..|+++++.
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 445555555555555555555555544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=94.43 E-value=6.5 Score=39.96 Aligned_cols=65 Identities=14% Similarity=0.049 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047305 460 DKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLP---DIITYNSLINGFCKVGNINGALKLFKELQL 524 (767)
Q Consensus 460 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 524 (767)
....+..++..+.+.|.++.|...+..+...+... .+.....-+..+-..|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33455566666677777777777776665532111 122223334445566666677766666665
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.078 Score=31.74 Aligned_cols=32 Identities=13% Similarity=0.067 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhccCC
Q 047305 567 AVYKSLMTWSCRRRKFSLAFSLWLQYLRDISG 598 (767)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 598 (767)
.+|..++.+|...|++++|+..|+++++.+|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35666777777778888888888777777765
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.27 E-value=3 Score=35.46 Aligned_cols=83 Identities=20% Similarity=0.201 Sum_probs=34.5
Q ss_pred HHHHHhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCC
Q 047305 69 VISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQL 148 (767)
Q Consensus 69 l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 148 (767)
++..+...+.......+++.+...+ +.++...+.++..|++.+ ..+.++.++. ..+......+++.|.+.+.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 3333333444444444444444443 234444444555554432 2233333331 0112223334455555555
Q ss_pred HHHHHHHHHHH
Q 047305 149 FLLALAVYYEM 159 (767)
Q Consensus 149 ~~~A~~~~~~~ 159 (767)
++++..++.++
T Consensus 85 ~~~~~~l~~k~ 95 (140)
T smart00299 85 YEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHhh
Confidence 55555555443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.21 E-value=3.2 Score=43.06 Aligned_cols=130 Identities=12% Similarity=0.088 Sum_probs=70.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhc
Q 047305 534 YGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQK 613 (767)
Q Consensus 534 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 613 (767)
.+.++..+.+.|..+.|+++... +.+ -.+...++|+++.|.++. ...+++..|..++.....+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D---------~~~---rFeLAl~lg~L~~A~~~a-----~~~~~~~~W~~Lg~~AL~~ 360 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTD---------PDH---RFELALQLGNLDIALEIA-----KELDDPEKWKQLGDEALRQ 360 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS----------HHH---HHHHHHHCT-HHHHHHHC-----CCCSTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHhhcCC---------hHH---HhHHHHhcCCHHHHHHHH-----HhcCcHHHHHHHHHHHHHc
Confidence 55555666666666666655422 111 123334566666666542 2223445566666666666
Q ss_pred CCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHH
Q 047305 614 GEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVF 693 (767)
Q Consensus 614 g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 693 (767)
|+.+-|.+.+.+... +..|...|.-.|+.+.-.++.+.+...| . ++.-..++...|+.++..+++
T Consensus 361 g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~-~-----~n~af~~~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 361 GNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG-D-----INIAFQAALLLGDVEECVDLL 425 (443)
T ss_dssp TBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHH
T ss_pred CCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc-C-----HHHHHHHHHHcCCHHHHHHHH
Confidence 666666666655421 6667777777777766666666666554 2 233444556667777777766
Q ss_pred HH
Q 047305 694 LY 695 (767)
Q Consensus 694 ~~ 695 (767)
.+
T Consensus 426 ~~ 427 (443)
T PF04053_consen 426 IE 427 (443)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.10 E-value=1.4 Score=45.67 Aligned_cols=108 Identities=17% Similarity=0.090 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 047305 413 VGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGN 492 (767)
Q Consensus 413 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 492 (767)
....+.++.-+.+.|.++.|+.+..+-. .-.+...+.|+++.|.++.++.
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~-------------------------~rFeLAl~lg~L~~A~~~a~~~----- 344 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTDPD-------------------------HRFELALQLGNLDIALEIAKEL----- 344 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS-HH-------------------------HHHHHHHHCT-HHHHHHHCCCC-----
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCChH-------------------------HHhHHHHhcCCHHHHHHHHHhc-----
Confidence 3345556666666666666665543321 2234455566666665554332
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 047305 493 LPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQN 560 (767)
Q Consensus 493 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 560 (767)
.+...|..|......+|+++-|.+.|.+..+ +..|+-.|.-.|+.+.-.++.+.....
T Consensus 345 -~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 345 -DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp -STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred -CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 2455666666666666766666666655421 334444455556655555555554443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.02 E-value=3.9 Score=44.28 Aligned_cols=96 Identities=11% Similarity=0.013 Sum_probs=48.7
Q ss_pred CccchHHHHHHHHhcC-----CHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcC---CHHHHHHHHHHHHHcCCCCCh
Q 047305 599 RDDESMKSIEEFLQKG-----EVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDG---QVKEALNIFSVLVECKAIVTP 670 (767)
Q Consensus 599 ~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~ 670 (767)
.+.+...++.+|.+.. +.+.|...+.+..... ++.....++..+.... +...|.++|..+.+.|. .
T Consensus 287 ~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g---~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~ 360 (552)
T KOG1550|consen 287 LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG---NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---I 360 (552)
T ss_pred CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC---CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---h
Confidence 3445555555555532 4455655555533222 2223445555555443 45667777777666552 2
Q ss_pred HhHHHHHHHHHh----cCChhHHHHHHHHHHHCC
Q 047305 671 PSCVKLIHGLCK----RGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 671 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 700 (767)
.+...++.+|.. .-+.+.|..+++++.++|
T Consensus 361 ~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 361 LAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 233344444432 235666666666666655
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.01 E-value=2.8 Score=34.12 Aligned_cols=59 Identities=25% Similarity=0.267 Sum_probs=27.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 047305 468 VEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGL 527 (767)
Q Consensus 468 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 527 (767)
+..+..+|.-+.-.+++..+.+. ..+++.....+..+|.+.|+..++-+++.++.+.|+
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33444455555555555554432 234444555555566666666666666655555553
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.62 E-value=16 Score=41.68 Aligned_cols=258 Identities=17% Similarity=0.225 Sum_probs=134.6
Q ss_pred CCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 047305 235 SPDFVAYNALLNGFCKLR--RVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYG 312 (767)
Q Consensus 235 ~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 312 (767)
.|+ .....+|..|.+.+ .++.++....+...... ...+-.+ +..++- +-.+..+|+..+.. -|.. -
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~~--~~~ad~a-l~hll~---Lvdvn~lfn~ALgt---YDl~--L 855 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQLAQV--AVSADEA-LKHLLF---LVDVNELFNSALGT---YDLD--L 855 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHhccc--chhHHHH-HHHHHh---hccHHHHHHhhhcc---cchH--H
Confidence 445 44556777777766 56666666666554111 1111111 111111 11222333332211 0111 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 047305 313 VMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNG 392 (767)
Q Consensus 313 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 392 (767)
+++-+-..+.++.+-+-+++++... +++..-| .|..| .++++.|..-+..+- ...|.-.++.-.+.|
T Consensus 856 al~VAq~SqkDPkEyLP~L~el~~m--~~~~rkF--~ID~~--L~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~ 922 (1265)
T KOG1920|consen 856 ALLVAQKSQKDPKEYLPFLNELKKM--ETLLRKF--KIDDY--LKRYEDALSHLSECG-------ETYFPECKNYIKKHG 922 (1265)
T ss_pred HHHHHHHhccChHHHHHHHHHHhhc--hhhhhhe--eHHHH--HHHHHHHHHHHHHcC-------ccccHHHHHHHHhcc
Confidence 2223334456777777777776642 1111111 12222 356666665554442 123334444455677
Q ss_pred CHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHH
Q 047305 393 MVDDAQKLFNKMEKAGCFPSVG----MFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMV 468 (767)
Q Consensus 393 ~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 468 (767)
.+.+|+.++. |+.. .|.+....+...+.+++|.-.|+..- -....+
T Consensus 923 Ly~~aL~ly~--------~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~G----------------------klekAl 972 (1265)
T KOG1920|consen 923 LYDEALALYK--------PDSEKQKVIYEAYADHLREELMSDEAALMYERCG----------------------KLEKAL 972 (1265)
T ss_pred cchhhhheec--------cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhc----------------------cHHHHH
Confidence 7777776653 3444 34444455566777888877776652 123446
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHh--hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 047305 469 EQYCTAGLIHKAYKILMQLAESGNLPDII--TYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDR 546 (767)
Q Consensus 469 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 546 (767)
.+|..+|++.+|..+..++... .+.. +-..|+.-+...+++-+|-++..+.... ....+..|++...
T Consensus 973 ~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~ 1041 (1265)
T KOG1920|consen 973 KAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKE 1041 (1265)
T ss_pred HHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhH
Confidence 6777788888888888776432 1222 2245667777788888888777776532 1223445566667
Q ss_pred HHHHHHHHHHhh
Q 047305 547 EEDAFRIFGQMP 558 (767)
Q Consensus 547 ~~~A~~~~~~~~ 558 (767)
+++|+++.....
T Consensus 1042 ~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1042 WEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHHhcc
Confidence 777777665544
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.26 Score=49.46 Aligned_cols=101 Identities=14% Similarity=0.079 Sum_probs=79.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHH
Q 047305 573 MTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVK 652 (767)
Q Consensus 573 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 652 (767)
+..+.+.+.++.|+.+|.++++..|+....+...+.++.+.+++..|+..+.+.- +.+|.....|..-+.++.+.+++.
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kai-e~dP~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAI-ELDPTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhh-hcCchhhheeeeccHHHHhHHHHH
Confidence 4445577888999999999999999888888888888888888888888887732 234777777888888888889999
Q ss_pred HHHHHHHHHHHcCCCCChHhHHH
Q 047305 653 EALNIFSVLVECKAIVTPPSCVK 675 (767)
Q Consensus 653 ~A~~~~~~~~~~~~~~~~~~~~~ 675 (767)
+|+..|++..... |.++.....
T Consensus 90 ~A~~~l~~~~~l~-Pnd~~~~r~ 111 (476)
T KOG0376|consen 90 KALLDLEKVKKLA-PNDPDATRK 111 (476)
T ss_pred HHHHHHHHhhhcC-cCcHHHHHH
Confidence 9999998887764 555544433
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.40 E-value=2.5 Score=36.17 Aligned_cols=76 Identities=18% Similarity=-0.017 Sum_probs=43.1
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 047305 608 EEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGY 685 (767)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 685 (767)
..-.+.++.+++...+..+.. ..|..+..-..-++.+...|+|.+|+.+++.+.+.. +..+.+--.++.++...|+
T Consensus 18 ~~al~~~~~~D~e~lL~ALrv-LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~-~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRV-LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA-PGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHHHccCChHHHHHHHHHHHH-hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHHcCC
Confidence 333445555555444444321 236666656666666777777777777777765554 4455555555656655554
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.35 E-value=13 Score=40.33 Aligned_cols=116 Identities=18% Similarity=0.122 Sum_probs=52.8
Q ss_pred cCCHHHHHHHHHHHHH-------cCCCCCHhhHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 047305 474 AGLIHKAYKILMQLAE-------SGNLPDIITYNSLINGFCKVG-----NINGALKLFKELQLKGLRPDSVTYGTLINGL 541 (767)
Q Consensus 474 ~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 541 (767)
..+.+.|...|+.+.+ .+ .......+..+|.+.. +.+.|..++......| .|+...+...+.-.
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~ 337 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYET 337 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHc
Confidence 3456666666665544 32 2223444555554432 4455666666665554 22333222221111
Q ss_pred Hh-cCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHH----hcCChhHHHHHHHHHHhcc
Q 047305 542 QR-VDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSC----RRRKFSLAFSLWLQYLRDI 596 (767)
Q Consensus 542 ~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~ 596 (767)
.. ..+...|.++|..+.+.|. ...+..+..+|. -..+.+.|..++.++.+.+
T Consensus 338 g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 338 GTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred CCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 11 1234566666666665542 222222333221 1125566666666666554
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.30 E-value=14 Score=39.88 Aligned_cols=101 Identities=10% Similarity=-0.048 Sum_probs=62.6
Q ss_pred HHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHH
Q 047305 575 WSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEA 654 (767)
Q Consensus 575 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 654 (767)
-+...|+..+|.++-.+.. -++-..++..+.++...+++++-.+...+.. +|..|.=...+|.+.|+.+||
T Consensus 693 ~li~~g~~k~a~ql~~~Fk---ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA 763 (829)
T KOG2280|consen 693 TLILIGQNKRAEQLKSDFK---IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEA 763 (829)
T ss_pred HHHHccchHHHHHHHHhcC---CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHH
Confidence 3456677777766543321 2334455556677777777766533322222 134477777888888888888
Q ss_pred HHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHH
Q 047305 655 LNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVF 693 (767)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 693 (767)
.+++-+.-. .+ ..+.+|.+.|++.+|.+.-
T Consensus 764 ~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 764 KKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hhhhhccCC-----hH----HHHHHHHHhccHHHHHHHH
Confidence 888877632 22 3556788888888887753
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.08 E-value=9.4 Score=37.55 Aligned_cols=150 Identities=10% Similarity=-0.040 Sum_probs=78.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH----hcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHh----
Q 047305 507 CKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQ----RVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCR---- 578 (767)
Q Consensus 507 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 578 (767)
...+++..+...+......+ +......+...|. ...+..+|..++..+.+.|. ......+..+|..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv 125 (292)
T COG0790 52 AYPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGV 125 (292)
T ss_pred cccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCc
Confidence 35667888888888877643 2233333333333 33457778888887766552 2333335555443
Q ss_pred cCChhHHHHHHHHHHhccCCC-ccchHHHHHHHHhcC-------CHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhc--
Q 047305 579 RRKFSLAFSLWLQYLRDISGR-DDESMKSIEEFLQKG-------EVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQD-- 648 (767)
Q Consensus 579 ~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~-- 648 (767)
..+..+|...|+++.+..-.. ..+...++..|..-+ +...|...+.+..... ++.....++..|...
T Consensus 126 ~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~G 202 (292)
T COG0790 126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLG 202 (292)
T ss_pred ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCC
Confidence 337778888887777654333 222444444444321 1113444444433222 333355555554432
Q ss_pred --CCHHHHHHHHHHHHHcC
Q 047305 649 --GQVKEALNIFSVLVECK 665 (767)
Q Consensus 649 --g~~~~A~~~~~~~~~~~ 665 (767)
.++++|..+|+++.+.|
T Consensus 203 v~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 203 VPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred CCcCHHHHHHHHHHHHHCC
Confidence 25555666666655554
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.01 E-value=6.3 Score=38.42 Aligned_cols=128 Identities=21% Similarity=0.303 Sum_probs=61.6
Q ss_pred hhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHH--c----CCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCCh
Q 047305 114 CEKALESFGKMKEFDCQPDVYIYNAVLNIAFR--K----QLFLLALAVYYEMVKLNC---LPNIVTFSLLINGLSKSGKT 184 (767)
Q Consensus 114 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~----g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~ 184 (767)
+++.+.+++.+.+.|+..+..+|-+..-.... . .....|..+|+.|.+... .++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34456677777777777776655443322222 1 134566777777776532 2344445544433 22222
Q ss_pred ----HHHHHHHHHHHHCCCCCChh-hHHHHHHHHHccC-C--HhHHHHHHHHHHHCCCCCCHHHHHH
Q 047305 185 ----EVAIKMLDEMTQRGILPNKF-TYTIVISGLCQIN-R--ADEAYRLFLKMKDSGCSPDFVAYNA 243 (767)
Q Consensus 185 ----~~A~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g-~--~~~a~~~~~~~~~~~~~~~~~~~~~ 243 (767)
+.+..+|+.+...|+..+-. -+.+-+-++.... . ...+.++++.+.+.|+++....|..
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccH
Confidence 33455555555555544222 1222222222111 1 2345555666666665555444443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=92.96 E-value=2.9 Score=35.73 Aligned_cols=80 Identities=15% Similarity=-0.039 Sum_probs=61.3
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhh
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLF 717 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 717 (767)
+..++.+-.+.++.+++..+++.+.-.. |..+..-..-++.+...|+|.+|+.+|+.+.+.. |..+....++..-+.
T Consensus 13 Lie~~~~al~~~~~~D~e~lL~ALrvLR-P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 13 LIEVLSVALRLGDPDDAEALLDALRVLR-PEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHH
Confidence 4445555567789999999999998886 7777888888999999999999999999987654 555555555555443
Q ss_pred cCC
Q 047305 718 SKD 720 (767)
Q Consensus 718 ~~~ 720 (767)
..|
T Consensus 90 ~~~ 92 (160)
T PF09613_consen 90 ALG 92 (160)
T ss_pred HcC
Confidence 333
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=92.93 E-value=18 Score=40.09 Aligned_cols=225 Identities=14% Similarity=0.007 Sum_probs=107.1
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChh-------hHHHHHH-HHHhcCCHHHHHHHHHHhhhC----CCCCCHhhHHHHHH
Q 047305 507 CKVGNINGALKLFKELQLKGLRPDSV-------TYGTLIN-GLQRVDREEDAFRIFGQMPQN----GCTPSPAVYKSLMT 574 (767)
Q Consensus 507 ~~~g~~~~A~~~~~~~~~~~~~p~~~-------~~~~l~~-~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~ 574 (767)
....++.+|..+..++...-..|+.. .++.+-. +....|++++|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 45567777777777666542222211 2222221 223456777777777766542 12233444555555
Q ss_pred HHHhcCChhHHHHHHHHHHhccCCCccchH------HHHHHHHhcCCHHHH--HHHHHHhh---hcCCCCCccchHHHHH
Q 047305 575 WSCRRRKFSLAFSLWLQYLRDISGRDDESM------KSIEEFLQKGEVENA--IQGLLEMD---FKLNDFQLAPYTIWLI 643 (767)
Q Consensus 575 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~------~l~~~~~~~g~~~~A--~~~~~~~~---~~~~p~~~~~~~~l~~ 643 (767)
+..-.|++++|..+..+..+........+. .-+..+..+|+...| ...+.... .+..|-+.......+.
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 566667788877776666543222222111 224445566632222 22222211 1112332222222222
Q ss_pred HHhhcCCHHHHHHHHHHHHHcCCC--CC--hHh--HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH----HHHHHHH
Q 047305 644 GLCQDGQVKEALNIFSVLVECKAI--VT--PPS--CVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPR----VCNYLLR 713 (767)
Q Consensus 644 ~~~~~g~~~~A~~~~~~~~~~~~~--~~--~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~ 713 (767)
++...-+++.+..-..+..+.+.. |. ... +..|+.++...|++++|...+.++......+... ...+.+.
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 222222355555555554332211 11 111 2357788888999999999888886654333211 1111222
Q ss_pred HHh-hcCCccHHHHHHHHHH
Q 047305 714 SLL-FSKDNKKVHAYHLLCR 732 (767)
Q Consensus 714 ~l~-~~~~~~~~~a~~~~~~ 732 (767)
..+ -..|+ ..++.....+
T Consensus 666 ~~lwl~qg~-~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGD-KELAAEWLLK 684 (894)
T ss_pred HHHhcccCC-HHHHHHHHHh
Confidence 222 25666 5666555544
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=92.77 E-value=12 Score=37.89 Aligned_cols=146 Identities=9% Similarity=-0.007 Sum_probs=84.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC---CHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCc-c--ch
Q 047305 530 DSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTP---SPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRD-D--ES 603 (767)
Q Consensus 530 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~--~~ 603 (767)
...++..++..+.+.|+++.|...+..+...+... .+.+....+..+...|+..+|+..++..++...... . ..
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 44578888889999999999999998887643211 345555566777788999999999888886222211 1 11
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhc------CCHHHHHHHHHHHHHcCCCCChHhHHH
Q 047305 604 MKSIEEFLQ--KGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQD------GQVKEALNIFSVLVECKAIVTPPSCVK 675 (767)
Q Consensus 604 ~~l~~~~~~--~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~~ 675 (767)
..+...... ............ ......++..++.-.... +..+++...|+++.+.. +....+|..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~k~~~~ 297 (352)
T PF02259_consen 225 AELKSGLLESLEVISSTNLDKES------KELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLD-PSWEKAWHS 297 (352)
T ss_pred HHHhhccccccccccccchhhhh------HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhC-hhHHHHHHH
Confidence 111100000 000000000000 000112255555555555 78899999999999886 666667777
Q ss_pred HHHHHHh
Q 047305 676 LIHGLCK 682 (767)
Q Consensus 676 l~~~~~~ 682 (767)
++..+.+
T Consensus 298 ~a~~~~~ 304 (352)
T PF02259_consen 298 WALFNDK 304 (352)
T ss_pred HHHHHHH
Confidence 7665543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.15 Score=48.54 Aligned_cols=119 Identities=13% Similarity=0.016 Sum_probs=91.7
Q ss_pred hcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHH
Q 047305 578 RRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNI 657 (767)
Q Consensus 578 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 657 (767)
..|.+++|++.|..+++.+|.....+...+.++.+.++...|++..... ..++|++...|-.-+.+....|+|++|...
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A-~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFA-IEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhh-hccCcccccccchhhHHHHHhhchHHHHHH
Confidence 5688999999999999999999999989999999999988887776653 235688887788888888888999999999
Q ss_pred HHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047305 658 FSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 699 (767)
+..+.+.++.+....+ +-.+.-..+..++-...+++..+.
T Consensus 205 l~~a~kld~dE~~~a~--lKeV~p~a~ki~e~~~k~er~~~e 244 (377)
T KOG1308|consen 205 LALACKLDYDEANSAT--LKEVFPNAGKIEEHRRKYERAREE 244 (377)
T ss_pred HHHHHhccccHHHHHH--HHHhccchhhhhhchhHHHHHHHH
Confidence 9999888766554443 334445566666666666666553
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=92.53 E-value=4.2 Score=40.46 Aligned_cols=109 Identities=14% Similarity=-0.007 Sum_probs=57.0
Q ss_pred CCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh---cCChhHHHHHHHHHHHC------CC
Q 047305 631 NDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCK---RGYLDLAMDVFLYTLKN------GF 701 (767)
Q Consensus 631 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~------~~ 701 (767)
.|++...+..++..+.+..+.++..+-+++++... +.++..|..+++.... .-.+++.+..|.+.++. +.
T Consensus 61 np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~ 139 (321)
T PF08424_consen 61 NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGR 139 (321)
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccc
Confidence 46666656666666666666666666666666654 5556666555554332 23455555555555442 10
Q ss_pred ---CCC-HH---HHHH----HHHHHhhcCCccHHHHHHHHHHHHHcCC-CCCC
Q 047305 702 ---ILR-PR---VCNY----LLRSLLFSKDNKKVHAYHLLCRMKSVGY-DLDA 742 (767)
Q Consensus 702 ---~~~-~~---~~~~----l~~~l~~~~~~~~~~a~~~~~~~~~~~~-~~~~ 742 (767)
.++ +. ...+ +..++ .+.|. .+.|..+++-+.+-.+ .|+.
T Consensus 140 ~~~~~~~~~~e~~~l~v~~r~~~fl-~~aG~-~E~Ava~~Qa~lE~n~~~P~~ 190 (321)
T PF08424_consen 140 MTSHPDLPELEEFMLYVFLRLCRFL-RQAGY-TERAVALWQALLEFNFFRPES 190 (321)
T ss_pred cccccchhhHHHHHHHHHHHHHHHH-HHCCc-hHHHHHHHHHHHHHHcCCccc
Confidence 000 00 1111 22222 26676 7777777777776664 4443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.44 E-value=13 Score=37.39 Aligned_cols=134 Identities=13% Similarity=0.081 Sum_probs=97.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHH
Q 047305 531 SVTYGTLINGLQRVDREEDAFRIFGQMPQNG-CTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEE 609 (767)
Q Consensus 531 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 609 (767)
..+|...+++..+..-.+.|+.+|.++.+.+ ..++..++.+.+.-+ ..|++..|..+|+--+...|+.+.........
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3456667777777777888999999998877 456777778887755 46888899999998888888888777777777
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCC-CCccchHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 047305 610 FLQKGEVENAIQGLLEMDFKLND-FQLAPYTIWLIGLCQDGQVKEALNIFSVLVECK 665 (767)
Q Consensus 610 ~~~~g~~~~A~~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 665 (767)
+...++-+.|...++....+... .-..+|..++.--..-|+..-|..+=+++.+.-
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~ 532 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELV 532 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHc
Confidence 88888888887666642111111 112347777777777788888888888887663
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.19 Score=29.67 Aligned_cols=27 Identities=19% Similarity=0.170 Sum_probs=13.5
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVEC 664 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 664 (767)
+..++.+|.+.|++++|++.|+++++.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344455555555555555555555443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.05 E-value=13 Score=36.35 Aligned_cols=83 Identities=17% Similarity=0.285 Sum_probs=38.7
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHc--cC----CHhHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCCH---
Q 047305 187 AIKMLDEMTQRGILPNKFTYTIVISGLCQ--IN----RADEAYRLFLKMKDSGC---SPDFVAYNALLNGFCKLRRV--- 254 (767)
Q Consensus 187 A~~~~~~~~~~~~~p~~~~~~~li~~~~~--~g----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~--- 254 (767)
...+++.+.+.|+.-+..+|-+....... .. ....|..+|+.|++... .++..++..++.. ..++.
T Consensus 81 ~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l 158 (297)
T PF13170_consen 81 VLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEEL 158 (297)
T ss_pred HHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHH
Confidence 34555666666666555554442222222 11 23456667777766431 2333444444333 22222
Q ss_pred -HHHHHHHHHHHhCCCCC
Q 047305 255 -DEALALLRSFEKDGFVP 271 (767)
Q Consensus 255 -~~a~~~~~~~~~~~~~~ 271 (767)
+.++.+++.+.+.|+..
T Consensus 159 ~~~~E~~Y~~L~~~~f~k 176 (297)
T PF13170_consen 159 AERMEQCYQKLADAGFKK 176 (297)
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 34455555555555443
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=91.99 E-value=0.33 Score=28.89 Aligned_cols=30 Identities=13% Similarity=0.053 Sum_probs=22.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhccC
Q 047305 568 VYKSLMTWSCRRRKFSLAFSLWLQYLRDIS 597 (767)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 597 (767)
+|..+..+|.+.|++++|.+.|+++++..|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 456677777778888888888887777666
|
... |
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.92 E-value=4.2 Score=37.14 Aligned_cols=105 Identities=10% Similarity=-0.049 Sum_probs=73.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCc----------cc
Q 047305 568 VYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQL----------AP 637 (767)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~----------~~ 637 (767)
+...-..-+.+.|++.+|..-|.+++ -.+..+..+..|.++ ..
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi---------------------------~~l~~L~lkEkP~e~eW~eLdk~~tpL 232 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAI---------------------------ICLRNLQLKEKPGEPEWLELDKMITPL 232 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHH---------------------------HHHHHHHhccCCCChHHHHHHHhhhHH
Confidence 33334445668889999988887765 222222111222222 23
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 700 (767)
+.++..++...|+|-++++.-..++... +.+..+|..-+.+....=+.++|..-|.++++..
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~-~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHH-PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 6677777888899999999999998886 7788888888888888888899999999988743
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.77 E-value=1.5 Score=40.68 Aligned_cols=104 Identities=21% Similarity=0.348 Sum_probs=65.3
Q ss_pred cCHHHHHHHHHHHHhc-----CChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 047305 96 VVSDVFFVLISGYYKV-----GDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVT 170 (767)
Q Consensus 96 ~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 170 (767)
.+..+|...+..+... +..+--...+..|.+.|+..|..+|+.|++.+-+.. +.|....
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~nvf 128 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQNVF 128 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHHHH
Confidence 3455566666555432 334555556677888888888888888887543321 1222211
Q ss_pred HHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCH
Q 047305 171 FSLLINGLSKS-GKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRA 219 (767)
Q Consensus 171 ~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 219 (767)
- ..|..- .+-+-+..++++|...|+.||..+-..++.++.+.+..
T Consensus 129 Q----~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 129 Q----KVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred H----HHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 1 112221 23345788888888888888888888888888777653
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=91.73 E-value=17 Score=37.26 Aligned_cols=51 Identities=6% Similarity=-0.072 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHHHHc-CCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047305 649 GQVKEALNIFSVLVEC-KAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 649 g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 699 (767)
.+.+..+.+.+++... |...-...+--+..-|....++++|++++..+++.
T Consensus 183 dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 183 DDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEH 234 (711)
T ss_pred ccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhh
Confidence 3455555555555322 21111222222334455555666666666655544
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=91.72 E-value=0.3 Score=28.80 Aligned_cols=28 Identities=7% Similarity=0.173 Sum_probs=18.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhccCC
Q 047305 571 SLMTWSCRRRKFSLAFSLWLQYLRDISG 598 (767)
Q Consensus 571 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 598 (767)
.++.++.+.|++++|.+.|+++++..|+
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4455566667777777777777766664
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=91.62 E-value=25 Score=38.86 Aligned_cols=83 Identities=16% Similarity=0.182 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHcCC---------CCCHHHHHHHHHH
Q 047305 357 GLLDQARSLQVEIWKRD---SLPNTHTFTILICGM--CRNGMVDDAQKLFNKMEKAGC---------FPSVGMFNALIDG 422 (767)
Q Consensus 357 ~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~---------~~~~~~~~~l~~~ 422 (767)
++...|.+.++.+.... ..+...++..++.+. .+.+..+++.+.++.+..... .|...+|..+++.
T Consensus 153 ~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l 232 (608)
T PF10345_consen 153 KDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDL 232 (608)
T ss_pred ccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHH
Confidence 56666666665554322 123333333333332 234545555555555522111 1234455555554
Q ss_pred H--HHcCCHHHHHHHHHHh
Q 047305 423 L--CKAGELEKANLLFYKM 439 (767)
Q Consensus 423 ~--~~~~~~~~A~~~~~~~ 439 (767)
+ ...|+++.+...++++
T Consensus 233 ~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 233 CCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHcCCHHHHHHHHHHH
Confidence 3 3566666666665555
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.60 E-value=18 Score=37.14 Aligned_cols=96 Identities=17% Similarity=0.167 Sum_probs=67.6
Q ss_pred CCChhhH-HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHH---HHhcCChhHHHHHHHHHHhccCCCccch
Q 047305 528 RPDSVTY-GTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTW---SCRRRKFSLAFSLWLQYLRDISGRDDES 603 (767)
Q Consensus 528 ~p~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 603 (767)
.|+..++ +.++..+.+.|-+.+|...+..+... .+|+...|...+.. ...+| ..-+..+|+.++.....++..|
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~lw 533 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDLW 533 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHHH
Confidence 4555554 45667777888889999999888775 35677777776654 33444 7888889999988877888888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH
Q 047305 604 MKSIEEFLQKGEVENAIQGLLE 625 (767)
Q Consensus 604 ~~l~~~~~~~g~~~~A~~~~~~ 625 (767)
......-...|..+.+-..+.+
T Consensus 534 ~~y~~~e~~~g~~en~~~~~~r 555 (568)
T KOG2396|consen 534 MDYMKEELPLGRPENCGQIYWR 555 (568)
T ss_pred HHHHHhhccCCCcccccHHHHH
Confidence 7666555567776666555554
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.48 E-value=1.8 Score=40.31 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 047305 221 EAYRLFLKMKDSGCSPDFVAYNALLNGFCKLR 252 (767)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 252 (767)
=+++++++|...|+.||..+-..|+.++.+.+
T Consensus 141 C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 141 CAIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 35666666666666666666666666666544
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=91.42 E-value=1.3 Score=33.88 Aligned_cols=39 Identities=23% Similarity=0.264 Sum_probs=23.7
Q ss_pred HHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHh
Q 047305 588 LWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEM 626 (767)
Q Consensus 588 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 626 (767)
-+++.++.+|.+..+.+.++..+...|++++|++.+.++
T Consensus 10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~ 48 (90)
T PF14561_consen 10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLEL 48 (90)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344555666666666666666666666666666666663
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=91.39 E-value=27 Score=38.78 Aligned_cols=228 Identities=11% Similarity=-0.022 Sum_probs=121.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------hhHHHHHH-HHHhcCCHHHHHHHHHHHHHC----CCCCChhhHH
Q 047305 468 VEQYCTAGLIHKAYKILMQLAESGNLPDI-------ITYNSLIN-GFCKVGNINGALKLFKELQLK----GLRPDSVTYG 535 (767)
Q Consensus 468 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~ 535 (767)
+.......++++|..+..++...-..|+. ..|+.+-. .....|++++|.++.+..... -..+....+.
T Consensus 422 aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~s 501 (894)
T COG2909 422 AWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALS 501 (894)
T ss_pred HHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhh
Confidence 34445667888888888776543222221 13333322 234678899999988887754 1233445667
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHH-----HHHHHhcCC--hhHHHHHHHHHH----hccCCCccch-
Q 047305 536 TLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSL-----MTWSCRRRK--FSLAFSLWLQYL----RDISGRDDES- 603 (767)
Q Consensus 536 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~g~--~~~A~~~~~~~~----~~~p~~~~~~- 603 (767)
.+..+..-.|++++|..+..+..+..-.-+...+..+ ..++...|+ +++....|...- ...|-.....
T Consensus 502 v~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~ 581 (894)
T COG2909 502 VLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVR 581 (894)
T ss_pred hhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHH
Confidence 7777888889999999888887654222333333322 233666773 333333333322 2223222222
Q ss_pred --HHHHHHHHhc-CCHHHHHHHHHHh-hhcCCCCCcc-chHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHh----HH
Q 047305 604 --MKSIEEFLQK-GEVENAIQGLLEM-DFKLNDFQLA-PYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPS----CV 674 (767)
Q Consensus 604 --~~l~~~~~~~-g~~~~A~~~~~~~-~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~ 674 (767)
..+..++.+. +...+|..-+.-. .....|.... .+..|+.++...|++++|...++++......+.+.+ -.
T Consensus 582 ~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 582 IRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 2334444441 1222221111111 1111222222 233778888899999999999999865433332222 22
Q ss_pred HHHHH--HHhcCChhHHHHHHHH
Q 047305 675 KLIHG--LCKRGYLDLAMDVFLY 695 (767)
Q Consensus 675 ~l~~~--~~~~g~~~~A~~~~~~ 695 (767)
..+.+ ....|+.++|.....+
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHh
Confidence 22222 2367888888777665
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=91.33 E-value=4.5 Score=40.23 Aligned_cols=29 Identities=21% Similarity=0.232 Sum_probs=22.1
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHcCC
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVECKA 666 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 666 (767)
+..+...+...|..+.|+.+++-+++.++
T Consensus 157 ~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 157 FLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 44555556677999999999999988765
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.13 E-value=1 Score=40.74 Aligned_cols=106 Identities=11% Similarity=-0.047 Sum_probs=77.3
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 047305 607 IEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYL 686 (767)
Q Consensus 607 ~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 686 (767)
+.-|....++..|+..+.+.- ...|..+..|.+-+..+.+.++++.+..--+++++.. +........++..+.....+
T Consensus 17 gnk~f~~k~y~~ai~~y~raI-~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~-~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 17 GNKCFIPKRYDDAIDCYSRAI-CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLD-PNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred cccccchhhhchHHHHHHHHH-hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcC-hHHHHHHHHHHHHHHhhccc
Confidence 445566667888888777732 2468888888888888999999999999888888875 66666777888888888889
Q ss_pred hHHHHHHHHHHH----CCCCCCHHHHHHHHHH
Q 047305 687 DLAMDVFLYTLK----NGFILRPRVCNYLLRS 714 (767)
Q Consensus 687 ~~A~~~~~~~~~----~~~~~~~~~~~~l~~~ 714 (767)
++|+..++++.. ..+.+..++...|..+
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 999999988843 2333334444444444
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=91.10 E-value=2.7 Score=34.42 Aligned_cols=70 Identities=13% Similarity=0.038 Sum_probs=53.1
Q ss_pred cchHHHHHHHhhcC---CHHHHHHHHHHHHH-cCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 047305 636 APYTIWLIGLCQDG---QVKEALNIFSVLVE-CKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRV 707 (767)
Q Consensus 636 ~~~~~l~~~~~~~g---~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 707 (767)
....+++|++.+.. +..+.+.+++.+.+ ........+...|+-++++.|++++++++.+..++.. |++..
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e--~~n~Q 106 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE--PNNRQ 106 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC--CCcHH
Confidence 34788899988875 56778889999886 3223346677778889999999999999999888754 66553
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.02 E-value=5.5 Score=35.42 Aligned_cols=64 Identities=19% Similarity=0.230 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047305 99 DVFFVLISGYYKVGDCEKALESFGKMKEFDCQPDV--YIYNAVLNIAFRKQLFLLALAVYYEMVKL 162 (767)
Q Consensus 99 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 162 (767)
..+..+...|.+.|+.++|++.|.++......+.. ..+-.+++...-.+++..+...+.+....
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 56677888888888988999888888875433333 35666777777888888887777766543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=90.99 E-value=2.9 Score=35.05 Aligned_cols=71 Identities=18% Similarity=0.021 Sum_probs=34.9
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 047305 613 KGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGY 685 (767)
Q Consensus 613 ~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 685 (767)
.++.+++...+..+.. ..|..+..-..-++.+...|+|++|+.+++++.+.+ +..+..--.++.++...|+
T Consensus 23 ~~d~~D~e~lLdALrv-LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~-~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 23 SADPYDAQAMLDALRV-LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA-GAPPYGKALLALCLNAKGD 93 (153)
T ss_pred cCCHHHHHHHHHHHHH-hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC-CCchHHHHHHHHHHHhcCC
Confidence 4444554444443321 235555555555556666666666666666665543 2223333344444444443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.60 E-value=2.5 Score=40.22 Aligned_cols=59 Identities=15% Similarity=0.194 Sum_probs=29.8
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTL 697 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 697 (767)
+..++..+...|+++.+.+.+++..+.. |-+...|..+..+|.+.|+...|+..|+++.
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 4444444555555555555555555544 4444455555555555555555555555443
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=90.53 E-value=32 Score=38.09 Aligned_cols=49 Identities=22% Similarity=0.059 Sum_probs=26.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCC-CCC-----HHHHHH--HHHHHHhcCCHHHHHHHHH
Q 047305 319 SEAGKVKDAMKLLSDMRERGI-VPD-----TYCYNA--LIKGFCDLGLLDQARSLQV 367 (767)
Q Consensus 319 ~~~g~~~~a~~~~~~~~~~~~-~~~-----~~~~~~--l~~~~~~~~~~~~a~~~~~ 367 (767)
+-.+++..+...+..|.+... .|+ ...+.. ..-.+...|+.+.|...|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 335777778888877765411 111 112222 2222335678888888886
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=90.48 E-value=9.6 Score=32.09 Aligned_cols=25 Identities=8% Similarity=0.161 Sum_probs=11.4
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHH
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLV 662 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~ 662 (767)
|...+......|.-.+|+.+.+.+.
T Consensus 96 Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 96 WHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred HHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 4444444444444444444444443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=90.46 E-value=1.5 Score=38.10 Aligned_cols=33 Identities=12% Similarity=0.008 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHhccCCCccchHHHHHHHHhcC
Q 047305 582 FSLAFSLWLQYLRDISGRDDESMKSIEEFLQKG 614 (767)
Q Consensus 582 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 614 (767)
+++|+.-|++++..+|+...+++.++.+|...+
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 466777778888888999999988888887654
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=90.29 E-value=0.7 Score=27.45 Aligned_cols=29 Identities=17% Similarity=0.084 Sum_probs=22.4
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047305 671 PSCVKLIHGLCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 671 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 699 (767)
.+|..++.+|...|++++|...|+++++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 35677888888888888888888888763
|
... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=90.21 E-value=0.49 Score=29.81 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=19.8
Q ss_pred chHHHHHHHhhcCCHHHHHHHHHHHHH
Q 047305 637 PYTIWLIGLCQDGQVKEALNIFSVLVE 663 (767)
Q Consensus 637 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 663 (767)
+++.++.+|...|++++|+.+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 467788888888888888888887753
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.20 E-value=59 Score=40.71 Aligned_cols=151 Identities=13% Similarity=0.110 Sum_probs=77.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 047305 278 CLIDGLFRAKRYDEAYAWYRKMFEEKI--EPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCD 355 (767)
Q Consensus 278 ~li~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 355 (767)
.+..+-.+++.+.+|...++.-..... ......|..+...|..-++++...-+...-.. +...+ .-+.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~-~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLY-QQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHH-HHHHHHHh
Confidence 344556667777777777776311100 01122344444477777777776666653111 12222 23334455
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHHcCCHHHHHH
Q 047305 356 LGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNAL-IDGLCKAGELEKANL 434 (767)
Q Consensus 356 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~~ 434 (767)
.|++..|...|+.+.+.++ +....++.++......|.++..+-..+...... .+....++.+ +.+--+.++|+....
T Consensus 1462 ~g~~~da~~Cye~~~q~~p-~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDP-DKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCCC-ccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 6777777777877777654 335556666665556666666665554443321 1122222222 233345566655544
Q ss_pred HH
Q 047305 435 LF 436 (767)
Q Consensus 435 ~~ 436 (767)
..
T Consensus 1540 ~l 1541 (2382)
T KOG0890|consen 1540 YL 1541 (2382)
T ss_pred hh
Confidence 43
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=89.89 E-value=13 Score=32.47 Aligned_cols=57 Identities=23% Similarity=0.210 Sum_probs=29.0
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047305 206 YTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEK 266 (767)
Q Consensus 206 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 266 (767)
+..++..+...|++-+|+.+.+..... +......++.+..+.+|..--..+++-..+
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455566666667766666666554221 111223355555555555544444444433
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=89.74 E-value=3 Score=37.17 Aligned_cols=73 Identities=10% Similarity=-0.005 Sum_probs=47.7
Q ss_pred HHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCC---CCChHhHHHHHHHHHhcCChhHHH
Q 047305 617 ENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKA---IVTPPSCVKLIHGLCKRGYLDLAM 690 (767)
Q Consensus 617 ~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~ 690 (767)
+.|.+.|.+++....-+++.....|+..|. ..+.++|+.++-++++... .+|+.++..|+.+|.+.|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 455566666655544556665555554444 6677888888888765431 345778888888888888877763
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=89.74 E-value=2.7 Score=43.37 Aligned_cols=104 Identities=17% Similarity=0.010 Sum_probs=77.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 047305 507 CKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAF 586 (767)
Q Consensus 507 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 586 (767)
...|+...|.+.+.........-..+....|++.+.+.|-...|-.++.+.+... ...+-++..+..++....+.+.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 4568888888887777654332234456777888888888888888888877654 455667777888888888899999
Q ss_pred HHHHHHHhccCCCccchHHHHHHHH
Q 047305 587 SLWLQYLRDISGRDDESMKSIEEFL 611 (767)
Q Consensus 587 ~~~~~~~~~~p~~~~~~~~l~~~~~ 611 (767)
+.|+++++..|.++..-..+....+
T Consensus 697 ~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 697 EAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999888888887776655544
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.66 E-value=19 Score=34.15 Aligned_cols=60 Identities=12% Similarity=0.055 Sum_probs=50.8
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
+...+..|...|.+.+|.++-++++..+ |.+...+-.|...|...|+--.|...|+++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 5556677888999999999999999988 88888888999999999998888888877643
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.31 E-value=3 Score=39.77 Aligned_cols=67 Identities=12% Similarity=0.047 Sum_probs=58.3
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRV 707 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 707 (767)
+.++-.+|.+.++++.|+...+.++... |.++.-+.--|-+|.+.|.+..|..-++..++.. |+.+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~--P~dp~ 250 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC--PEDPI 250 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC--CCchh
Confidence 6677778999999999999999999987 8888888889999999999999999999998865 65554
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=89.18 E-value=27 Score=35.34 Aligned_cols=103 Identities=12% Similarity=-0.111 Sum_probs=57.6
Q ss_pred HHHHhcCChhHHHHHHHHHHhccCC-CccchHHHHHHHH-hcCCHHHHHHHHHHhhhcCCCC----CccchHHHHHHHhh
Q 047305 574 TWSCRRRKFSLAFSLWLQYLRDISG-RDDESMKSIEEFL-QKGEVENAIQGLLEMDFKLNDF----QLAPYTIWLIGLCQ 647 (767)
Q Consensus 574 ~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~p~----~~~~~~~l~~~~~~ 647 (767)
..+.+.|-+..|.++.+-++..+|. ||......+..|+ +.++++--+............. -|..-.+.+-++..
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~ 190 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFR 190 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHH
Confidence 4466777777777777777777777 6655555555554 4566655555554422210011 12334455555555
Q ss_pred cCCH---------------HHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 047305 648 DGQV---------------KEALNIFSVLVECKAIVTPPSCVKLIHGL 680 (767)
Q Consensus 648 ~g~~---------------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 680 (767)
.++- ++|.+.+++++..- |.+...|.+..
T Consensus 191 l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f----P~vl~~Ll~~l 234 (360)
T PF04910_consen 191 LEKEESSQSSAQSGRSENSESADEALQKAILRF----PWVLVPLLDKL 234 (360)
T ss_pred hcCccccccccccccccchhHHHHHHHHHHHHh----HHHHHHHHHHh
Confidence 6665 77888888876542 34444444433
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=89.08 E-value=6.6 Score=34.91 Aligned_cols=63 Identities=14% Similarity=0.208 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 047305 497 ITYNSLINGFCKVGNINGALKLFKELQLKGLRPDS--VTYGTLINGLQRVDREEDAFRIFGQMPQ 559 (767)
Q Consensus 497 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 559 (767)
..+..+..-|.+.|+.+.|++.|.++.+....+.. ..+..+++.....+++..+...+.++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34566677777777777777777777765444333 2455666666777777777777666654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=88.68 E-value=0.91 Score=28.51 Aligned_cols=28 Identities=14% Similarity=0.229 Sum_probs=24.3
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 671 PSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 671 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
.+++.++.+|...|++++|..++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678899999999999999999999876
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=88.58 E-value=16 Score=31.87 Aligned_cols=135 Identities=14% Similarity=0.184 Sum_probs=87.0
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 047305 83 WQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKL 162 (767)
Q Consensus 83 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 162 (767)
.+++..+.+.++++++..+..+++.+.+.|++....++.+ .++-+|.......+-.+ .+....+.++--+|.+.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq----~~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ----YHVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh----hcccCCcHHHHHHHHHh--HccChHHHHHHHHHHHH
Confidence 4566677778899999999999999999998776655544 45556655544444222 23445556655555543
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHH
Q 047305 163 NCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKD 231 (767)
Q Consensus 163 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 231 (767)
= ...+..++..+...|++-+|+++....... +......++.+..+.++...=..+|+-..+
T Consensus 88 L----~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 L----GTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred h----hhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 114566778888899999999998876432 333345566666666666555555544443
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=88.44 E-value=2.2 Score=28.61 Aligned_cols=39 Identities=21% Similarity=-0.017 Sum_probs=25.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047305 672 SCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLL 712 (767)
Q Consensus 672 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 712 (767)
+...++-++.+.|++++|+++.+.+++. .|+......|.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~--eP~N~Qa~~L~ 41 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI--EPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--TTS-HHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCcHHHHHHH
Confidence 4556777788888888888888888774 37766544443
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.82 E-value=25 Score=33.34 Aligned_cols=55 Identities=16% Similarity=0.190 Sum_probs=34.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHH
Q 047305 606 SIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVL 661 (767)
Q Consensus 606 l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 661 (767)
.+..|...|.+.+|++.-++. ...+|-+...+-.+...|+..|+--.|.+-|+++
T Consensus 285 va~~yle~g~~neAi~l~qr~-ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRA-LTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHH-hhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 355566677777776555542 2345666666777777777777766666666665
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=87.66 E-value=1.2 Score=28.41 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=17.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHC
Q 047305 675 KLIHGLCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 675 ~l~~~~~~~g~~~~A~~~~~~~~~~ 699 (767)
.|+.+|...|+.+.|++++++.+..
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHc
Confidence 4667777777777777777777643
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=87.46 E-value=51 Score=36.42 Aligned_cols=28 Identities=18% Similarity=0.395 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 047305 497 ITYNSLINGFCK---VGNINGALKLFKELQL 524 (767)
Q Consensus 497 ~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 524 (767)
..+..||..|.+ ..++.+|++++--+..
T Consensus 325 ln~arLI~~Y~~~F~~td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 325 LNFARLIGQYTRSFEITDPREALQYLYLICL 355 (613)
T ss_dssp --HHHHHHHHHHTTTTT-HHHHHHHHHGGGG
T ss_pred cCHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 345556666653 3456666666655544
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=87.45 E-value=0.74 Score=25.42 Aligned_cols=20 Identities=20% Similarity=0.199 Sum_probs=9.4
Q ss_pred HHHHHHHhhcCCHHHHHHHH
Q 047305 639 TIWLIGLCQDGQVKEALNIF 658 (767)
Q Consensus 639 ~~l~~~~~~~g~~~~A~~~~ 658 (767)
..++.++...|++++|..++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHH
Confidence 34444444444444444443
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=87.00 E-value=7.4 Score=35.84 Aligned_cols=92 Identities=15% Similarity=0.136 Sum_probs=57.1
Q ss_pred hhcCCHHHHHHHHHHHHH----cCCCCC--hHhHHHHHHHHHhcCCh-------hHHHHHHHHHHHCCCC----CCHHHH
Q 047305 646 CQDGQVKEALNIFSVLVE----CKAIVT--PPSCVKLIHGLCKRGYL-------DLAMDVFLYTLKNGFI----LRPRVC 708 (767)
Q Consensus 646 ~~~g~~~~A~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~g~~-------~~A~~~~~~~~~~~~~----~~~~~~ 708 (767)
.....+++|++.|.-++- .+.++. ...+..++|.|...|+. ..|...|+++.+..-. .+....
T Consensus 88 ~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l 167 (214)
T PF09986_consen 88 SGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL 167 (214)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence 344567777777766531 221333 44567788888877773 4455555555544322 233456
Q ss_pred HHHHHHHhhcCCccHHHHHHHHHHHHHcCC
Q 047305 709 NYLLRSLLFSKDNKKVHAYHLLCRMKSVGY 738 (767)
Q Consensus 709 ~~l~~~l~~~~~~~~~~a~~~~~~~~~~~~ 738 (767)
.+|++-|..+.|+ +++|...+.++...+-
T Consensus 168 ~YLigeL~rrlg~-~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 168 LYLIGELNRRLGN-YDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHhCC-HHHHHHHHHHHHcCCC
Confidence 7778887778887 8888888888876543
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=86.91 E-value=2.8 Score=43.36 Aligned_cols=129 Identities=12% Similarity=0.042 Sum_probs=86.9
Q ss_pred HHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCcc-chHHHHHHHHhcCCHHHHHHHHHH-h
Q 047305 549 DAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDD-ESMKSIEEFLQKGEVENAIQGLLE-M 626 (767)
Q Consensus 549 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~-~ 626 (767)
-|-.++..|.. .+.|--...+...-.+.-.|+...|...+..++..-|.... ....++....+.|-...|-..+.. +
T Consensus 591 ~~~~~~~~~~~-~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l 669 (886)
T KOG4507|consen 591 IGSFLFHAINK-PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQAL 669 (886)
T ss_pred HHHHHHHHhcC-CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHH
Confidence 34455544432 22333333332222234568889999988888877776654 446888888888887788777766 3
Q ss_pred hhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 047305 627 DFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLC 681 (767)
Q Consensus 627 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 681 (767)
.. ....+-.+..+|++|....+.+.|++.|+.+.+.. +.++++-+.|..+-+
T Consensus 670 ~~--~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 670 AI--NSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred hh--cccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 32 24445558888899999999999999999998887 777777776655544
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=86.66 E-value=39 Score=34.26 Aligned_cols=32 Identities=19% Similarity=0.148 Sum_probs=25.1
Q ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047305 457 RVHDKASLQTMVEQYCTAGLIHKAYKILMQLA 488 (767)
Q Consensus 457 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 488 (767)
.+....++..+...+..+|+.+.|.+++++++
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45667778888888888898888888887764
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=86.17 E-value=1.1 Score=24.72 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=20.0
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHH
Q 047305 671 PSCVKLIHGLCKRGYLDLAMDVFL 694 (767)
Q Consensus 671 ~~~~~l~~~~~~~g~~~~A~~~~~ 694 (767)
.+...++.++...|+.++|+..++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356678999999999999998875
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=86.10 E-value=35 Score=33.16 Aligned_cols=186 Identities=13% Similarity=0.071 Sum_probs=79.6
Q ss_pred CHhhHHHHHHHHHhcCCH----HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC-----HHHHHHHHHHhhhCCCCCC
Q 047305 495 DIITYNSLINGFCKVGNI----NGALKLFKELQLKGLRPDSVTYGTLINGLQRVDR-----EEDAFRIFGQMPQNGCTPS 565 (767)
Q Consensus 495 ~~~~~~~l~~~~~~~g~~----~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-----~~~A~~~~~~~~~~~~~~~ 565 (767)
+...-...+.++...|+. .++...+..+... .|+..+-...+.++...+. ...+...+..+. ..++
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~---~D~~ 141 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITA---FDKS 141 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHh---hCCC
Confidence 333334444555555542 3455555554333 3344444344444433321 112223332222 2334
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcC-CHHHHHHHHHHhhhcCCCCCccchHHHHHH
Q 047305 566 PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKG-EVENAIQGLLEMDFKLNDFQLAPYTIWLIG 644 (767)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~ 644 (767)
..+-...+.++.+.++ ++|+..+..+++. +++.+....+.++...+ ..+.++..+..+.. ++ +..+....+++
T Consensus 142 ~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d--~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~--D~-~~~VR~~A~~a 215 (280)
T PRK09687 142 TNVRFAVAFALSVIND-EAAIPLLINLLKD--PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ--DK-NEEIRIEAIIG 215 (280)
T ss_pred HHHHHHHHHHHhccCC-HHHHHHHHHHhcC--CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc--CC-ChHHHHHHHHH
Confidence 4455555555555554 4455555555532 22233333444444332 12334444444221 12 22234445555
Q ss_pred HhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 645 LCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 645 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
+.+.|+ .+|+..+-+.++.+ + .....+.++...|. ++|+..++++.+
T Consensus 216 Lg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~-~~a~p~L~~l~~ 262 (280)
T PRK09687 216 LALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGD-KTLLPVLDTLLY 262 (280)
T ss_pred HHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCC-HhHHHHHHHHHh
Confidence 555555 44555555554432 1 23344455555555 345555555544
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.85 E-value=37 Score=33.29 Aligned_cols=181 Identities=14% Similarity=-0.010 Sum_probs=105.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----c
Q 047305 473 TAGLIHKAYKILMQLAESGNLPDIITYNSLINGFC----KVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQR----V 544 (767)
Q Consensus 473 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~ 544 (767)
..+++..+...+......+ +......+...|. ...+..+|..+|..+...|. ......+...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcc
Confidence 3455666777776665532 2233333333333 23457788888887776653 2233334444443 3
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhc-----C--ChhHHHHHHHHHHhccCCCccchHHHHHHHHh----c
Q 047305 545 DREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRR-----R--KFSLAFSLWLQYLRDISGRDDESMKSIEEFLQ----K 613 (767)
Q Consensus 545 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~ 613 (767)
.+..+|...++++.+.|..+.......+...|..- - +...|...|.++.... ++.+...++..|.. .
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCC
Confidence 47888999999998877444323344444444332 1 2337888888877665 56666677766654 3
Q ss_pred CCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcC---------------CHHHHHHHHHHHHHcC
Q 047305 614 GEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDG---------------QVKEALNIFSVLVECK 665 (767)
Q Consensus 614 g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~ 665 (767)
.+.++|...+.+.....+ ......++ .+...| +...|...+.++...+
T Consensus 205 ~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 267 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELG 267 (292)
T ss_pred cCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcC
Confidence 478888888888654433 44466666 555555 5555555555555544
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=85.27 E-value=8.7 Score=35.37 Aligned_cols=65 Identities=12% Similarity=-0.025 Sum_probs=40.3
Q ss_pred hHHHHHHHhhcCC-------HHHHHHHHHHHHHcCCC-----CChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 047305 638 YTIWLIGLCQDGQ-------VKEALNIFSVLVECKAI-----VTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFI 702 (767)
Q Consensus 638 ~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 702 (767)
+..++|.|...|+ +..|++.|.++.+..-. .+......+|....+.|+.++|.+.|.+++..+-.
T Consensus 121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 4555555555555 34555566665433212 12455667788888888888888888888765433
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=85.03 E-value=1.5 Score=25.01 Aligned_cols=26 Identities=19% Similarity=0.115 Sum_probs=13.7
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHH
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVE 663 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 663 (767)
+..++.++...|++++|...++++++
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 44555555555555555555555544
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=84.14 E-value=36 Score=31.84 Aligned_cols=187 Identities=8% Similarity=0.002 Sum_probs=119.9
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCC-CCHhhHHHHHHHHHh-cCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHH-
Q 047305 541 LQRVDREEDAFRIFGQMPQNGCT-PSPAVYKSLMTWSCR-RRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVE- 617 (767)
Q Consensus 541 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~- 617 (767)
+.+..+-+.|+++-+.++..+.. -+...|...+ +.. ..+..+-.+.++++++.+|.|-.++...-......|++.
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~i--L~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~ 130 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVI--LRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSF 130 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccchHHHHHHHH--HHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCccc
Confidence 34566778899999988874311 1233333322 222 236788889999999999999999987777777777776
Q ss_pred HHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh-cCC-----hhHHHH
Q 047305 618 NAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCK-RGY-----LDLAMD 691 (767)
Q Consensus 618 ~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~-----~~~A~~ 691 (767)
.-++....+-. .+..+-.+|...-|++..-+.++.-+.+..++++.++ -+..+|+.-...... .|- .+.-+.
T Consensus 131 rELef~~~~l~-~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di-~NNSAWN~Ryfvi~~~~~~~~~~~le~El~ 208 (318)
T KOG0530|consen 131 RELEFTKLMLD-DDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDI-RNNSAWNQRYFVITNTKGVISKAELERELN 208 (318)
T ss_pred chHHHHHHHHh-ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhh-hccchhheeeEEEEeccCCccHHHHHHHHH
Confidence 44455555432 3455566799999999999999999999999999884 444566653332222 232 233455
Q ss_pred HHHHHHHCCCCCCHHH-HHHHHHHHhhcCCc-cHHHHHHHHHHH
Q 047305 692 VFLYTLKNGFILRPRV-CNYLLRSLLFSKDN-KKVHAYHLLCRM 733 (767)
Q Consensus 692 ~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~-~~~~a~~~~~~~ 733 (767)
+..+.+. ..|+... |++|-+.+-...|- ....+......+
T Consensus 209 yt~~~I~--~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l 250 (318)
T KOG0530|consen 209 YTKDKIL--LVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENL 250 (318)
T ss_pred HHHHHHH--hCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHH
Confidence 5666665 5577665 77777776532441 023444444444
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=84.09 E-value=1.3e+02 Score=38.05 Aligned_cols=61 Identities=8% Similarity=-0.064 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 047305 532 VTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRD 595 (767)
Q Consensus 532 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 595 (767)
.+|...++....+|+++.|...+-.+.+.+ -+..+...+..+...|+-..|..++++.++.
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 457777777777777777777776666543 3344555566666777777777777777743
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=84.08 E-value=6.9 Score=34.95 Aligned_cols=41 Identities=15% Similarity=0.190 Sum_probs=17.5
Q ss_pred CCHHHHHHHHHHhhhC---CCCCCHhhHHHHHHHHHhcCChhHH
Q 047305 545 DREEDAFRIFGQMPQN---GCTPSPAVYKSLMTWSCRRRKFSLA 585 (767)
Q Consensus 545 ~~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A 585 (767)
.+.++|+.++.++++. +-.+++..+.+|+..+.+.|+++.|
T Consensus 154 rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 154 RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3444444444444331 1133444444444444444444443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.04 E-value=18 Score=38.00 Aligned_cols=102 Identities=16% Similarity=0.061 Sum_probs=52.1
Q ss_pred HHHhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHH
Q 047305 71 SMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFL 150 (767)
Q Consensus 71 ~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 150 (767)
.+.++.|+++.|.++..+.. ++.-|..|.++....+++..|.+.|.+... |..|+-.+...|+.+
T Consensus 645 elal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~ 709 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAE 709 (794)
T ss_pred hhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChh
Confidence 34445556655555544432 334566666666666666666666655443 334555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 047305 151 LALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDE 193 (767)
Q Consensus 151 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 193 (767)
....+-....+.| . .|...-+|...|+++++++++..
T Consensus 710 ~l~~la~~~~~~g--~----~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 710 GLAVLASLAKKQG--K----NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHHHHhhc--c----cchHHHHHHHcCCHHHHHHHHHh
Confidence 4444444444443 1 12222344455666665555544
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=83.18 E-value=2.1 Score=24.36 Aligned_cols=29 Identities=10% Similarity=-0.023 Sum_probs=15.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhccC
Q 047305 569 YKSLMTWSCRRRKFSLAFSLWLQYLRDIS 597 (767)
Q Consensus 569 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 597 (767)
+..+..++...|++++|...|.+.++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 34445555555666666666655555444
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.98 E-value=60 Score=33.40 Aligned_cols=111 Identities=14% Similarity=0.054 Sum_probs=75.3
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHH------
Q 047305 421 DGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKA-----SLQTMVEQYCTAGLIHKAYKILMQLAE------ 489 (767)
Q Consensus 421 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~------ 489 (767)
..+.-.|++.+|.+++-....... .+...++. .++.+.-.+.+.|.+..+..+|.++.+
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~----------~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL 317 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKE----------AGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL 317 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccc----------cCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence 345567899999988866532221 22222322 346667777888999999999998875
Q ss_pred -cCCCCCH-----------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 047305 490 -SGNLPDI-----------ITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQR 543 (767)
Q Consensus 490 -~~~~~~~-----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 543 (767)
.|..|.. .+||. .-.|...|++-.|.+.|...... +..++..|..++.+|..
T Consensus 318 ~~g~~~~~~~tls~nks~eilYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 318 RNGLKPAKTFTLSQNKSMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hccCCCCcceehhcccchhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 3433321 23433 34577899999999999988764 35588899999999864
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.93 E-value=21 Score=37.56 Aligned_cols=131 Identities=13% Similarity=0.120 Sum_probs=81.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhc
Q 047305 534 YGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQK 613 (767)
Q Consensus 534 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 613 (767)
.+.++..+.+.|-.++|+++- ..|+.. .+...+.|+++.|.++..+. +++.-|..++.+....
T Consensus 617 rt~va~Fle~~g~~e~AL~~s-------~D~d~r-----Felal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~ 679 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALELS-------TDPDQR-----FELALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSA 679 (794)
T ss_pred hhhHHhHhhhccchHhhhhcC-------CChhhh-----hhhhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhc
Confidence 344555566666666555432 222221 12234677778777764433 5556677778888888
Q ss_pred CCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHH
Q 047305 614 GEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVF 693 (767)
Q Consensus 614 g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 693 (767)
|++..|.+.+.+... |..|.-.+...|+-+--..+-....+.| +.| .-..+|...|+++++.+++
T Consensus 680 ~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g-~~N-----~AF~~~~l~g~~~~C~~lL 744 (794)
T KOG0276|consen 680 GELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG-KNN-----LAFLAYFLSGDYEECLELL 744 (794)
T ss_pred ccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc-ccc-----hHHHHHHHcCCHHHHHHHH
Confidence 888888777766321 6667777777777766666666666665 332 2334778889998888887
Q ss_pred HHH
Q 047305 694 LYT 696 (767)
Q Consensus 694 ~~~ 696 (767)
.+-
T Consensus 745 i~t 747 (794)
T KOG0276|consen 745 IST 747 (794)
T ss_pred Hhc
Confidence 543
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=82.44 E-value=8.8 Score=29.38 Aligned_cols=60 Identities=17% Similarity=0.263 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHH
Q 047305 514 GALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMT 574 (767)
Q Consensus 514 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 574 (767)
++.+-++.+...++-|++....+.+++|.+.+++.-|.++++-+... ...+...|..++.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq 84 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence 45555566666667777777777777777777777777777766532 1223345554443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.30 E-value=3.6 Score=41.73 Aligned_cols=96 Identities=11% Similarity=-0.048 Sum_probs=80.4
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 047305 607 IEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYL 686 (767)
Q Consensus 607 ~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 686 (767)
+..+..-++++.|+..+.+.- ..+|+.+..+...+.++.+.+++..|+.-+.++++.. |.-..+|..-+.++.+.+++
T Consensus 11 an~~l~~~~fd~avdlysKaI-~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAI-ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred HhhhcccchHHHHHHHHHHHH-hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHHH
Confidence 445567788999988888832 2469999989999999999999999999999999987 66677888888999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHH
Q 047305 687 DLAMDVFLYTLKNGFILRPR 706 (767)
Q Consensus 687 ~~A~~~~~~~~~~~~~~~~~ 706 (767)
.+|...|+.... +.|+..
T Consensus 89 ~~A~~~l~~~~~--l~Pnd~ 106 (476)
T KOG0376|consen 89 KKALLDLEKVKK--LAPNDP 106 (476)
T ss_pred HHHHHHHHHhhh--cCcCcH
Confidence 999999999865 457755
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=82.21 E-value=17 Score=30.01 Aligned_cols=76 Identities=11% Similarity=0.047 Sum_probs=51.2
Q ss_pred CCChhhHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccch
Q 047305 528 RPDSVTYGTLINGLQRVDR---EEDAFRIFGQMPQNGCTP-SPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDES 603 (767)
Q Consensus 528 ~p~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 603 (767)
.++..+-..+..++.+..+ ..+.+.+++.+.+...+. .......+.-.+.+.|+|+.+..+.+..++..|++..+.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 4455566667777776654 456788888887622222 222333444457789999999999999998888887764
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.48 E-value=70 Score=33.14 Aligned_cols=239 Identities=12% Similarity=0.056 Sum_probs=131.1
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcC------CHHHHHHHHHHHHHC-CCCCC-hhhHHHHHHHHHhcCCHHHHHH
Q 047305 481 YKILMQLAESGNLPDIITYNSLINGFCKVG------NINGALKLFKELQLK-GLRPD-SVTYGTLINGLQRVDREEDAFR 552 (767)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~A~~ 552 (767)
..+|+...+. .++...|+..|..|...- ....-..+|+..... +..++ ...|..+.-.+..... |..
T Consensus 302 ~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~---~r~ 376 (568)
T KOG2396|consen 302 CAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNE---ARE 376 (568)
T ss_pred HHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccch---HhH
Confidence 3555555443 345555655555544321 334444555555543 23333 2345444444444433 333
Q ss_pred HHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHH---HHhccCCCccchHHHHHHHHhcCC-HHHHHHHH--HHh
Q 047305 553 IFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQ---YLRDISGRDDESMKSIEEFLQKGE-VENAIQGL--LEM 626 (767)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~--~~~ 626 (767)
....+...++..+...|..-+....+... .+.-.|.+ .++..+..+......... .|+ ....+..+ ..+
T Consensus 377 ~a~~l~~e~f~~s~k~~~~kl~~~~~s~s--D~q~~f~~l~n~~r~~~~s~~~~~w~s~~---~~dsl~~~~~~~Ii~a~ 451 (568)
T KOG2396|consen 377 VAVKLTTELFRDSGKMWQLKLQVLIESKS--DFQMLFEELFNHLRKQVCSELLISWASAS---EGDSLQEDTLDLIISAL 451 (568)
T ss_pred HHHHhhHHHhcchHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHhcchhHHHHHHHh---hccchhHHHHHHHHHHH
Confidence 33333322345566666655555443221 22222222 222223222222111111 233 22222222 223
Q ss_pred hhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHH---HhcCChhHHHHHHHHHHHCCCCC
Q 047305 627 DFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGL---CKRGYLDLAMDVFLYTLKNGFIL 703 (767)
Q Consensus 627 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~~ 703 (767)
.....|+..+.-+.+...+.+.|-+.+|...|.+....- |++...+..+++.- ...| ..-++.+|+.|+.. +.-
T Consensus 452 ~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~-fg~ 528 (568)
T KOG2396|consen 452 LSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCN-LANIREYYDRALRE-FGA 528 (568)
T ss_pred HHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHH-hCC
Confidence 333457777778888999999999999999999998874 77877777777653 2344 88899999999864 457
Q ss_pred CHHHHHHHHHHHhhcCCccHHHHHHHHHHHH
Q 047305 704 RPRVCNYLLRSLLFSKDNKKVHAYHLLCRMK 734 (767)
Q Consensus 704 ~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~ 734 (767)
|+.+|-..+..=. ..|. .+.+-.++.+.+
T Consensus 529 d~~lw~~y~~~e~-~~g~-~en~~~~~~ra~ 557 (568)
T KOG2396|consen 529 DSDLWMDYMKEEL-PLGR-PENCGQIYWRAM 557 (568)
T ss_pred ChHHHHHHHHhhc-cCCC-cccccHHHHHHH
Confidence 8998887766655 6776 666666666654
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.29 E-value=18 Score=35.02 Aligned_cols=96 Identities=17% Similarity=0.115 Sum_probs=64.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCcc----chHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHH
Q 047305 567 AVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDD----ESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWL 642 (767)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~ 642 (767)
..|.-=+.-|.+.+++..|...|.+.++....++. .|.+.+.+....|++..|+..-... .+.+|.+.-+|..=+
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~a-l~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAA-LKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhhhhhhh
Confidence 34444455677888888888888888876655554 3345566666677777776665552 234577777677777
Q ss_pred HHHhhcCCHHHHHHHHHHHHH
Q 047305 643 IGLCQDGQVKEALNIFSVLVE 663 (767)
Q Consensus 643 ~~~~~~g~~~~A~~~~~~~~~ 663 (767)
.++....++++|..+.+....
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhh
Confidence 777777777777777776643
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=81.05 E-value=95 Score=34.35 Aligned_cols=223 Identities=14% Similarity=0.082 Sum_probs=88.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC-------HhHHHHHHHHHHHCCCCCCHH---
Q 047305 170 TFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINR-------ADEAYRLFLKMKDSGCSPDFV--- 239 (767)
Q Consensus 170 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~--- 239 (767)
..-.++-.+.++|++++|.++....... +......+...+..|....+ -+....-|++........|+.
T Consensus 113 p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~A 191 (613)
T PF04097_consen 113 PIWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRA 191 (613)
T ss_dssp EHHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHH
T ss_pred ccHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHH
Confidence 3345666778899999999888554432 33455667777777766532 234555566555443322443
Q ss_pred HHHHHHHHHHh-cCCHHH----HHHHH--HHH-HhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 047305 240 AYNALLNGFCK-LRRVDE----ALALL--RSF-EKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLY 311 (767)
Q Consensus 240 ~~~~l~~~~~~-~~~~~~----a~~~~--~~~-~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 311 (767)
.|..+ ..|-- ...... .++++ +-. .......+...+ ..-.+++-...+.+.-+....+ ....
T Consensus 192 vY~il-g~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~--------e~~~L~~LQ~~i~~~Ge~~F~~-~~~p 261 (613)
T PF04097_consen 192 VYKIL-GRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAY--------ERYTLEDLQKLILKYGESHFNA-GSNP 261 (613)
T ss_dssp HHHHH-HT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS------------HHHHHHHHHHH-GGGCTT-----
T ss_pred HHHHH-hcCCccccchHHHhCcHHHHHHHHHHhhccCCCcccccc--------ccccHHHHHHHHHHhchhhccc-chhH
Confidence 23322 11111 111101 11111 111 011100000000 0001122222222222222222 1111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHh
Q 047305 312 GVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDS-LPNTHTFTILICGMCR 390 (767)
Q Consensus 312 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 390 (767)
-.....+.-.|+++.|.+.+-. ..+...+.+.+...+.-| |-+......-..+..... .+...-+..||..|.+
T Consensus 262 ~~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~---gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~ 336 (613)
T PF04097_consen 262 LLYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYY---GLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTR 336 (613)
T ss_dssp --HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHT---T------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHc---CCCCCCCccccceeeecCCCCCCcCHHHHHHHHHH
Confidence 2234455668999999999877 112233444444443333 332222221122222211 1122557788888876
Q ss_pred ---cCCHHHHHHHHHHHHHcC
Q 047305 391 ---NGMVDDAQKLFNKMEKAG 408 (767)
Q Consensus 391 ---~g~~~~A~~~~~~~~~~~ 408 (767)
..++..|..++-.+....
T Consensus 337 ~F~~td~~~Al~Y~~li~~~~ 357 (613)
T PF04097_consen 337 SFEITDPREALQYLYLICLFK 357 (613)
T ss_dssp TTTTT-HHHHHHHHHGGGGS-
T ss_pred HHhccCHHHHHHHHHHHHHcC
Confidence 567888888888776643
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.95 E-value=14 Score=33.43 Aligned_cols=60 Identities=17% Similarity=0.228 Sum_probs=49.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH-hhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 047305 604 MKSIEEFLQKGEVENAIQGLLE-MDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECK 665 (767)
Q Consensus 604 ~~l~~~~~~~g~~~~A~~~~~~-~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 665 (767)
...+..+.+.+...+|+..... +. ..|.+...-..+...||-.|+|++|+.-++.+-...
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVk--akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~ 65 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVK--AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLS 65 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHh--cCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcC
Confidence 3446677888999999988888 44 358888888999999999999999999999887654
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=80.90 E-value=97 Score=34.38 Aligned_cols=209 Identities=8% Similarity=-0.037 Sum_probs=117.1
Q ss_pred hcCCHHHHHHHHHHHHHcC-CCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 047305 473 TAGLIHKAYKILMQLAESG-NLPD--IITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREED 549 (767)
Q Consensus 473 ~~g~~~~A~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 549 (767)
...+.+.|...+....... ..+. ...+..+.......+...+|...++...... .+......-+..-...++++.
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHH
Confidence 4566788999998774443 2221 1234444444444432556666666654331 244445555555568889998
Q ss_pred HHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHH-hhh
Q 047305 550 AFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLE-MDF 628 (767)
Q Consensus 550 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~ 628 (767)
+...+..|.... .....-.--+++++...|+.++|...|+++... ..++..... .+.|..-. ...... ...
T Consensus 331 ~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~-----~~fYG~LAa-~~Lg~~~~-~~~~~~~~~~ 402 (644)
T PRK11619 331 LNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ-----RGFYPMVAA-QRLGEEYP-LKIDKAPKPD 402 (644)
T ss_pred HHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC-----CCcHHHHHH-HHcCCCCC-CCCCCCCchh
Confidence 888888886532 223333334566666789999999999887532 123322111 11221100 000000 000
Q ss_pred cCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047305 629 KLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYT 696 (767)
Q Consensus 629 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 696 (767)
...+. ..-...+..+...|+..+|...+..+.+. .++.-...++......|..+.++....+.
T Consensus 403 ~~~~~--~~~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 403 SALTQ--GPEMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred hhhcc--ChHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 00011 12345566777889999999888888764 34455667777777888888887766543
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.86 E-value=10 Score=36.14 Aligned_cols=49 Identities=18% Similarity=0.291 Sum_probs=28.6
Q ss_pred ChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 047305 113 DCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVK 161 (767)
Q Consensus 113 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 161 (767)
++++++.+...-.++|+-||.++++.+++.+.+.+++..|.++.-.|..
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3445665555555566666666666666666666666665555555544
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=80.79 E-value=6.8 Score=37.44 Aligned_cols=51 Identities=14% Similarity=-0.083 Sum_probs=23.8
Q ss_pred HHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHH
Q 047305 575 WSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLE 625 (767)
Q Consensus 575 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 625 (767)
+|.+.++++.|..+.+.++...|+++.-+-..+..|.+.|.+..|+..+..
T Consensus 190 ~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~ 240 (269)
T PRK10941 190 ALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSY 240 (269)
T ss_pred HHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 344445555555555444444444444444444444444444444444443
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=80.29 E-value=13 Score=28.59 Aligned_cols=41 Identities=12% Similarity=0.198 Sum_probs=17.9
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHH
Q 047305 189 KMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKM 229 (767)
Q Consensus 189 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 229 (767)
+-++.+...++.|++....+.+++|.+.+++.-|..+|+-.
T Consensus 28 r~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~v 68 (103)
T cd00923 28 RGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAI 68 (103)
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 33333333444444444444444444444444444444443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=80.26 E-value=14 Score=28.67 Aligned_cols=31 Identities=10% Similarity=0.280 Sum_probs=11.1
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 047305 164 CLPNIVTFSLLINGLSKSGKTEVAIKMLDEM 194 (767)
Q Consensus 164 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 194 (767)
+.|++.+....+++|.+.+++..|.++|+.+
T Consensus 41 lVP~P~ii~aALrAcRRvND~a~AVR~lE~i 71 (108)
T PF02284_consen 41 LVPEPKIIEAALRACRRVNDFALAVRILEGI 71 (108)
T ss_dssp B---HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3344444444444444444444444444433
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.23 E-value=18 Score=33.24 Aligned_cols=57 Identities=9% Similarity=0.060 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHH
Q 047305 569 YKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLE 625 (767)
Q Consensus 569 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 625 (767)
+.....++...|++-++++...++++..|.+..+++..+.+....-+..+|...+.+
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~ 289 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQK 289 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 334445555667778888888888888888877777777777777777777766666
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.02 E-value=1.6 Score=42.01 Aligned_cols=94 Identities=14% Similarity=-0.028 Sum_probs=77.7
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHH
Q 047305 610 FLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLA 689 (767)
Q Consensus 610 ~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 689 (767)
....|.+++|+..+.... ...|.....|...+.++.+.++...|+.-+..+++.+ +.....|-.-+.+....|+|++|
T Consensus 124 Aln~G~~~~ai~~~t~ai-~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein-~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAI-ELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN-PDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred HhcCcchhhhhccccccc-ccCCchhhhcccccceeeeccCCchhhhhhhhhhccC-cccccccchhhHHHHHhhchHHH
Confidence 345688999988888732 2468888889999999999999999999999999987 66666677777788889999999
Q ss_pred HHHHHHHHHCCCCCCH
Q 047305 690 MDVFLYTLKNGFILRP 705 (767)
Q Consensus 690 ~~~~~~~~~~~~~~~~ 705 (767)
...+..+.+.++.+..
T Consensus 202 a~dl~~a~kld~dE~~ 217 (377)
T KOG1308|consen 202 AHDLALACKLDYDEAN 217 (377)
T ss_pred HHHHHHHHhccccHHH
Confidence 9999999987755543
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.01 E-value=53 Score=30.77 Aligned_cols=196 Identities=12% Similarity=0.149 Sum_probs=99.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHH
Q 047305 392 GMVDDAQKLFNKMEKAGCFPS---VGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMV 468 (767)
Q Consensus 392 g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 468 (767)
..+++|+.-|.+..+...... -.+...++..+.+.+++++....++++.. +.+.. .....+....+.++
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT------YIkSA--VTrNySEKsIN~Il 112 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT------YIKSA--VTRNYSEKSINSIL 112 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH------HHHHH--HhccccHHHHHHHH
Confidence 456667777776655422212 22344566677778888888777777641 10000 01112333445555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc-CCCCCHh----hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCChh-------
Q 047305 469 EQYCTAGLIHKAYKILMQLAES-GNLPDII----TYNSLINGFCKVGNINGALKLFKELQLKGL----RPDSV------- 532 (767)
Q Consensus 469 ~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~p~~~------- 532 (767)
+..+.+.+.+--.++++.-++. .-..+.. +-..+...|...|.+.+..++++++....- ..|..
T Consensus 113 DyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLE 192 (440)
T KOG1464|consen 113 DYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLE 192 (440)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhh
Confidence 5544444444444444322111 0011222 224566777778888888888887775421 11221
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCCCHhhHHHHH----HHHHhcCChhHHHHHHHHHHhc
Q 047305 533 TYGTLINGLQRVDREEDAFRIFGQMPQN-GCTPSPAVYKSLM----TWSCRRRKFSLAFSLWLQYLRD 595 (767)
Q Consensus 533 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~----~~~~~~g~~~~A~~~~~~~~~~ 595 (767)
.|..=+..|....+-..-..++++.+.. ..-|.+.....+- .+..+.|++++|-.-|=++.+.
T Consensus 193 iYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 193 IYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred hHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 2333444555566666666777776542 2234443333222 2244567788876666555544
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 89.9 bits (221), Expect = 2e-18
Identities = 22/138 (15%), Positives = 45/138 (32%), Gaps = 4/138 (2%)
Query: 445 PTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAE---SGNLPDIITYNS 501
+ L + + A+ +L+ L + YN+
Sbjct: 111 EQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNA 170
Query: 502 LINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDR-EEDAFRIFGQMPQN 560
++ G+ + G + + ++ GL PD ++Y + + R D+ R QM Q
Sbjct: 171 VMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQE 230
Query: 561 GCTPSPAVYKSLMTWSCR 578
G L++ R
Sbjct: 231 GLKLQALFTAVLLSEEDR 248
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 81.8 bits (200), Expect = 4e-16
Identities = 26/194 (13%), Positives = 61/194 (31%), Gaps = 4/194 (2%)
Query: 166 PNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRL 225
P + L+ +V + +Q + + ++ A+ L
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 226 FLKMKD---SGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDG 282
+ YNA++ G+ + E + +L + G P L SY+ +
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 283 LFRAKRYDEAYAWY-RKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVP 341
+ R + +M +E ++ + V++ A +K K+ +P
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269
Query: 342 DTYCYNALIKGFCD 355
+ L++
Sbjct: 270 PPVNTSKLLRDVYA 283
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 77.5 bits (189), Expect = 1e-14
Identities = 29/237 (12%), Positives = 72/237 (30%), Gaps = 8/237 (3%)
Query: 104 LISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLA---LAVYYEMV 160
L+ + G+ + A LA L V++
Sbjct: 98 LLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQR 157
Query: 161 KLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRAD 220
+ L + ++ ++ G ++ G + + +L + G+ P+ +Y + + + ++
Sbjct: 158 QKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDA 217
Query: 221 EAY-RLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCL 279
R +M G + LL+ + + + +F +P + S L
Sbjct: 218 GTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKL 277
Query: 280 IDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRE 336
+ ++ Y K+ + + L+ V K +E
Sbjct: 278 LRDVYAKDGRVS----YPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKE 330
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 74.9 bits (182), Expect = 7e-14
Identities = 35/316 (11%), Positives = 79/316 (25%), Gaps = 36/316 (11%)
Query: 183 KTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYN 242
++A + D Q P + ++ D + + S
Sbjct: 72 SKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLL 131
Query: 243 ALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEE 302
A ++ A LL + ++
Sbjct: 132 AFFKCCLLTDQLPLAHHLLVV--------------------------------HHGQRQK 159
Query: 303 KIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQA 362
+ + +Y ++ G + G K+ + +L +++ G+ PD Y A ++
Sbjct: 160 RKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGT 219
Query: 363 -RSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALI- 420
++ + +L+ R ++ K+ P + L+
Sbjct: 220 IERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLR 279
Query: 421 DGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKA 480
D K G + L + L + S++ K
Sbjct: 280 DVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVV--SVEKPTLPSKEVKHARKT 337
Query: 481 YKILMQLAESGNLPDI 496
K L E +
Sbjct: 338 LKTLRDQWEKALCRAL 353
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 72.2 bits (175), Expect = 4e-13
Identities = 23/189 (12%), Positives = 56/189 (29%), Gaps = 15/189 (7%)
Query: 334 MRERGIVPDTYCYNALIKGFCDLGLLDQARSL---QVEIWKRDSLPNTHTFTILICGMCR 390
+ + A K L A L ++ L + ++ G R
Sbjct: 118 HSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR 177
Query: 391 NGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLR 450
G + + ++ AG P + + A + + + + +
Sbjct: 178 QGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGT-----------IERCLEQ 226
Query: 451 LSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVG 510
+SQ G ++ + ++ + A ++ +K+ + LP + + L+
Sbjct: 227 MSQEGLKLQALFT-AVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD 285
Query: 511 NINGALKLF 519
KL
Sbjct: 286 GRVSYPKLH 294
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 56.4 bits (134), Expect = 3e-08
Identities = 30/227 (13%), Positives = 71/227 (31%), Gaps = 12/227 (5%)
Query: 16 TPIEPALEPLLPFLSKTTVTSVIMKTKNPQVGFRFFIWAAKRKRLRSFASN-SAVISMLL 74
P P E L L + + + P + +L A L
Sbjct: 86 APESPWEEQLARLLQEAPGKLSLDVEQAPS-------GQHSQAQLSGQQQRLLAFFKCCL 138
Query: 75 KPNGFDLYWQTLDELRS---GNVSVVSDVFFVLISGYYKVGDCEKALESFGKMKEFDCQP 131
+ L L + D++ ++ G+ + G ++ + +K+ P
Sbjct: 139 LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP 198
Query: 132 DVYIYNAVLNIAFRKQLFLLALAVY-YEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKM 190
D+ Y A L R+ + +M + + ++L++ ++ + K+
Sbjct: 199 DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258
Query: 191 LDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPD 237
+ LP + ++ + + +L L +K C +
Sbjct: 259 KPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFE 305
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.8 bits (162), Expect = 2e-11
Identities = 111/681 (16%), Positives = 208/681 (30%), Gaps = 237/681 (34%)
Query: 22 LEPLLPFLSKTTVTSVIMKTKNPQVGFRFFIWAAKRKRLRSFASNSAVISMLLKPN-GFD 80
+ LSK + I+ +K+ G W K+ + +L+ N F
Sbjct: 39 QDMPKSILSKEEIDH-IIMSKDAVSGTLRLFWTLLSKQEEMVQ---KFVEEVLRINYKF- 93
Query: 81 LY--WQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNA 138
L +T S + ++ Y + F K +V
Sbjct: 94 LMSPIKTEQRQPSMM----TRMYIEQRDRLYNDN------QVFAKY-------NVSRLQP 136
Query: 139 VLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRG 198
L + R+ L +L N++ I+G+ SGKT VA+ + +
Sbjct: 137 YLKL--RQALL-----------ELRPAKNVL-----IDGVLGSGKTWVALDVCLSYKVQC 178
Query: 199 ILPNK-FTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEA 257
+ K F + C N + L+M L ++D
Sbjct: 179 KMDFKIFWLNL---KNC--NSPET----VLEM---------------LQKLL--YQID-- 210
Query: 258 LALLRSFEKDGFVPRLGSYSCLIDGLFRAK-RYDEAYAWYRKMFEEKIEPDVVLYGVMIR 316
+++ D K R A R++ + K + +L ++
Sbjct: 211 ----------------PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL---VLL 251
Query: 317 GLSEAGKVKDAM----KLLSDMRERGIV----PDTYCYNALI---KGFCD---LGLLDQA 362
+ A K +A K+L R + + T + +L LL
Sbjct: 252 NVQNA-KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL--L 308
Query: 363 RSLQVEIWKRDSLP----NTHTFTILICG-MCRNGMV-------DDAQKLFNKMEKA--- 407
+ L LP T+ + I R+G+ + KL +E +
Sbjct: 309 KYLDCRP---QDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 408 -------GCFPSVGMF--NALI--DGLCK-------------AGELEKANLLF-----YK 438
F + +F +A I L +L K +L+
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425
Query: 439 MEIGKNPTLFLRLSQGGNRVHDKASL-QTMVEQYCTAGLIHKAYKILMQLAESGNLPDII 497
+ I P+++L L ++ ++ +L +++V+ Y I K + ++ P +
Sbjct: 426 ISI---PSIYLELKV---KLENEYALHRSIVDHY----NIPKTFD-----SDDLIPPYLD 470
Query: 498 TYNSLINGFCKVG----NINGALK--LFKE-------LQLKGLRPDSVTY---GTLINGL 541
Y + +G NI + LF+ L+ K +R DS + G+++N L
Sbjct: 471 QYF-----YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK-IRHDSTAWNASGSILNTL 524
Query: 542 QRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDD 601
Q++ YK Y+ D + +
Sbjct: 525 QQLKF----------------------YK--------------------PYICDNDPKYE 542
Query: 602 ESMKSIEEFLQKGEVENAIQG 622
+ +I +FL K E EN I
Sbjct: 543 RLVNAILDFLPKIE-ENLICS 562
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 3e-07
Identities = 59/420 (14%), Positives = 119/420 (28%), Gaps = 134/420 (31%)
Query: 417 NALIDGLCKAG-ELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAG 475
ID + + + LF+ + LS+ V Q VE
Sbjct: 48 KEEIDHIIMSKDAVSGTLRLFWTL-----------LSKQEEMV------QKFVE-----E 85
Query: 476 LIHKAYKILM-QLAESGNLPDIIT--YNSLINGFCKVGNINGALKLFKELQLKGLRPDSV 532
++ YK LM + P ++T Y + ++ N N ++F + + R
Sbjct: 86 VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD---RLYNDN---QVFAKYNVS--RLQPY 137
Query: 533 TYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWS-CRRRKFSLAFS---L 588
L L + ++ I G + G K+ + C K
Sbjct: 138 L--KLRQALLELRPAKNVL-IDG-VL--GSG------KTWVALDVCLSYKVQCKMDFKIF 185
Query: 589 WLQYLRDISGRDDESMKSIEEFLQKGE---------VENAIQGLLEMDFKLND-FQLAPY 638
WL S + ++ +++ L + + N + + +L + PY
Sbjct: 186 WLNLKNCNS--PETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 639 TIWLIGL---------------CQ------DGQV-----------------------KEA 654
L+ L C+ QV E
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 655 LNIFSVLVECK-------AIVTPPSCVKLIHGLCKRG------YLDLAMDVFLYTLKNGF 701
++ ++C+ + T P + +I + G + + D +++
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363
Query: 702 -ILRPRVCNYLLRSL-LFSKDNKKVH-AYHLLCRM--KSVGYD----LDACLYPKTKSLL 752
+L P + L +F H LL + + D ++ SL+
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPS---AHIPTILLSLIWFDVIKSDVMVVVNKL---HKYSLV 417
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 4e-07
Identities = 65/521 (12%), Positives = 143/521 (27%), Gaps = 133/521 (25%)
Query: 296 YRKM---FEEKIEPDVVLYGV--MIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCY--NA 348
Y+ + FE+ + V M + + ++ + + + T
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE 77
Query: 349 LIKGFCDLGLLDQ-----ARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNK 403
+++ F + +L ++ E +R T + R+ + +D Q +F K
Sbjct: 78 MVQKFVE-EVLRINYKFLMSPIKTE--QRQPSMMTRMYI-----EQRDRLYNDNQ-VFAK 128
Query: 404 MEKAGCFPSVGMFNALIDGLCKAGELEKA-NLLFYKME-IGKNPTLFLRLSQGGNRVHDK 461
+ + L L EL A N+L + GK + L +
Sbjct: 129 YN----VSRLQPYLKLRQALL---ELRPAKNVLIDGVLGSGKT-WVALDVCL------SY 174
Query: 462 ASLQTMVEQ--YCTAGLIHKAYKILMQLAESGNLPDIIT--YNSLINGFCKVG-NINGAL 516
M + + + +L L L I + S + + I+
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQ---KLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 517 KLFKELQLKGLRPDSVTYGTLINGLQRV-DREE-DAFRIFGQMPQNGCTPSPAVYKSLMT 574
+ L + + L+ L V + + +AF + C K L+T
Sbjct: 232 AELRRLLKSKPYENCL----LV--LLNVQNAKAWNAFNL-------SC-------KILLT 271
Query: 575 WSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDF- 633
R + L + S+ L EV++ + L+ + D
Sbjct: 272 ----TRFKQVTDFL------SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ--DLP 319
Query: 634 ----QLAPYTIWLIG-LCQDG----------QVKEALNIFSVLVECKAIVTPPSCVKLIH 678
P + +I +DG + I + + P
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV---LEPA------- 369
Query: 679 GLCKRGYLDLAM---DV--------FLYTLKNGFILRPRVCNYLLRSLLFSKDNKK---- 723
++ + L++ ++ + V SL+ K+
Sbjct: 370 -EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK-QPKESTIS 427
Query: 724 VHAYHLLCRMKSVG-----------YDLDACLYPKTKSLLP 753
+ + +L ++K Y++
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 6e-08
Identities = 48/368 (13%), Positives = 97/368 (26%), Gaps = 42/368 (11%)
Query: 200 LPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFV-AYNALLNGFCKLRRVDEAL 258
L I G A A+R L +P+ V A + G L V L
Sbjct: 33 LDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLL 92
Query: 259 ALLRSFEKD-GFVPRLG-SYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPD-VVLYGVMI 315
+ G P+ + + G + + + P+ VV
Sbjct: 93 P---VLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQ--AHGLTPEQVVAIASHD 147
Query: 316 RGLSEAGKVKDAMKLLSDMRERGIVPDTYC-YNALIKGFCDLGLLDQA-RSLQVEIWKRD 373
G V+ + +L + G+ P+ + G L + + L
Sbjct: 148 GGKQALETVQALLPVLC--QAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAH---- 201
Query: 374 SLPNTHTFTILICGMCRN--GMVDDAQKLFNK-MEKAGCFPSVGMFNALIDGLCKAGELE 430
L I G + V + + + G ++
Sbjct: 202 GLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVA--IASNGGGKQALETVQ 259
Query: 431 KANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAES 490
+ L G P + ++ ++Q ++ C +A+ +
Sbjct: 260 RL-LPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLC------QAHGL------- 305
Query: 491 GNLPDIITYNSLINGFCKVGNINGALKLF-KELQLKGLRPD-SVTYGTLINGLQRVDREE 548
++ S G + + L + + L P V + G Q ++ +
Sbjct: 306 -TPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT---PQQVVAIASHDGGKQALETVQ 361
Query: 549 DAFRIFGQ 556
+ Q
Sbjct: 362 RLLPVLCQ 369
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 51.3 bits (123), Expect = 8e-07
Identities = 33/267 (12%), Positives = 68/267 (25%), Gaps = 29/267 (10%)
Query: 107 GYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQ-LFLLALAVYYEMVKLNCL 165
G + + L + + V I + + L V + L
Sbjct: 149 GKQALETVQALLPVLCQAHGLTPEQVVAIAS--NGGGKQALETVQRLLPVLCQAHGLT-- 204
Query: 166 PN-IVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKF-TYTIVISGLCQINRADEA- 222
P +V + G + + +L + + P + G +
Sbjct: 205 PQQVVAIASNGGGKQALETVQRLLPVLCQAHG--LTPQQVVAIASNGGGKQALETVQRLL 262
Query: 223 --YRLFLKMKDSGCSPDFV-AYNALLNGFCKLRRVDEALALLRSFEKD-GFVPR-LGSYS 277
+ P V A + G L V L + G P+ + + +
Sbjct: 263 PVLCQAHGLT-----PQQVVAIASNSGGKQALETVQRLLP---VLCQAHGLTPQQVVAIA 314
Query: 278 CLIDGLFRAKRYDEAYAWYRKMFEEKIEPD-VVLYGVMIRGLSEAGKVKDAMKLLSDMRE 336
G + + + P VV G V+ + +L +
Sbjct: 315 SNGGGKQALETVQRLLPVLCQAHG--LTPQQVVAIASHDGGKQALETVQRLLPVLC--QA 370
Query: 337 RGIVPD-TYCYNALIKGFCDLGLLDQA 362
G+ P+ + G L + +
Sbjct: 371 HGLTPEQVVAIASNGGGKQALETVQRL 397
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 55/444 (12%), Positives = 112/444 (25%), Gaps = 74/444 (16%)
Query: 132 DVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPN-IVTFSLLINGLSKSGKTEVAIKM 190
V + + L V + L P +V + G + + +
Sbjct: 71 QVVAIASHDGGKQALETVQRLLPVLCQAHGLT--PQQVVAIASHDGGKQALETVQRLLPV 128
Query: 191 LDEMTQRGILPNKF-TYTIVISGLCQINRADEAYRLFLKMKDSGCSPDF-VAYNALLNGF 248
L + G+ P + G + + + G +P+ VA + G
Sbjct: 129 LCQ--AHGLTPEQVVAIASHDGGKQALETVQALLPVL--CQAHGLTPEQVVAIASNGGGK 184
Query: 249 CKLRRVDEALALLRSFEKDGFVPRLGS-----YSCLIDGLFRAKRYDEAYAWYRKMFEEK 303
L V L + L + G + +
Sbjct: 185 QALETVQRLLP---VLCQ---AHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHG-- 236
Query: 304 IEPD-VVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPD-TYCYNALIKGFCDLGLLDQ 361
+ P VV G V+ + +L + G+ P + G L + +
Sbjct: 237 LTPQQVVAIASNGGGKQALETVQRLLPVLC--QAHGLTPQQVVAIASNSGGKQALETVQR 294
Query: 362 ARSLQVEIWKRDSLPNTHTFTILICGMCRN--GMVDDAQKLFNK------------MEKA 407
+ + P I G + V + +
Sbjct: 295 LLPVLCQAHGLT--PQ-QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHD 351
Query: 408 GCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTM 467
G ++ L+ LC+A L P + ++ G ++Q +
Sbjct: 352 GGKQALETVQRLLPVLCQAHGL--------------TPEQVVAIASNGGGKQALETVQRL 397
Query: 468 VEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGL 527
+ C +A+ + ++ S G + + L + Q GL
Sbjct: 398 LPVLC------QAHGL--------TPEQVVAIASHDGGKQALETVQRLLPVLC--QAHGL 441
Query: 528 RPDSV-TYGTLINGLQRVDREEDA 550
P V + G ++
Sbjct: 442 TPQQVVAIASNGGGRPALESIVAQ 465
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 35/266 (13%), Positives = 69/266 (25%), Gaps = 27/266 (10%)
Query: 107 GYYKVGDCEKALESFGKMKEFDCQPD-VYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCL 165
G + ++ L + P V + + L V + L
Sbjct: 217 GKQALETVQRLLPVLCQAHGLT--PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT-- 272
Query: 166 PN-IVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKF-TYTIVISGLCQINRADEAY 223
P +V + G + + +L + G+ P + G +
Sbjct: 273 PQQVVAIASNSGGKQALETVQRLLPVLCQA--HGLTPQQVVAIASNGGGKQALETVQRLL 330
Query: 224 RLFLKMKDSGCSPDF-VAYNALLNGFCKLRRVDEALALLRSFEKD-GFVPRLG-SYSCLI 280
+ + G +P VA + G L V L + G P + +
Sbjct: 331 PVL--CQAHGLTPQQVVAIASHDGGKQALETVQRLLP---VLCQAHGLTPEQVVAIASNG 385
Query: 281 DGLFRAKRYDEAYAWYRKMFEEKIEPD-VVLYGVMIRGLSEAGKVKDAMKLLSDMRERGI 339
G + + + P+ VV G V+ + +L + G+
Sbjct: 386 GGKQALETVQRLLPVLCQAHG--LTPEQVVAIASHDGGKQALETVQRLLPVLC--QAHGL 441
Query: 340 VPD---TYCYNALIKGFCDLGLLDQA 362
P N + L +
Sbjct: 442 TPQQVVAIASNGGGRP--ALESIVAQ 465
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 55.4 bits (133), Expect = 6e-08
Identities = 69/510 (13%), Positives = 133/510 (26%), Gaps = 78/510 (15%)
Query: 107 GYYKVGDCEKALESFGKMKEFDCQPD-VYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCL 165
G + ++ L + P V + + L V + L
Sbjct: 201 GKQALETVQRLLPVLCQAHGLT--PAQVVAIASHDGGKQALETMQRLLPVLCQAHGLP-- 256
Query: 166 PN-IVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKF-TYTIVISGLCQINRADEAY 223
P+ +V + I G + + +L + G+ P++ G +
Sbjct: 257 PDQVVAIASNIGGKQALETVQRLLPVLCQA--HGLTPDQVVAIASHGGGKQALETVQRLL 314
Query: 224 RLFLKMKDSGCSPDFV-AYNALLNGFCKLRRVDEALALLRS------------FEKDGFV 270
+ + G +PD V A + G L V L +L G
Sbjct: 315 PVLCQ--AHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGK 372
Query: 271 PRLGSYSCLIDGLFRA--------------------KRYDEAYAWYRKMFEEKIEPD-VV 309
L + L+ L +A + + + PD VV
Sbjct: 373 QALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQALETVQRLLPVLCQAHG--LTPDQVV 430
Query: 310 LYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYC-YNALIKGFCDLGLLDQARSLQVE 368
G V+ L + G+ P + G L + Q + +
Sbjct: 431 AIASHDGGKQALETVQRL--LPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQ 488
Query: 369 IWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGE 428
+ I G V + + V + + G
Sbjct: 489 A-HGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGG-GKQALET 546
Query: 429 LEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTA-------------- 474
+++ L G P + ++ G ++Q ++ C A
Sbjct: 547 VQRL-LPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASN 605
Query: 475 -------GLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGL 527
+ + +L Q A ++ S G + + L + Q GL
Sbjct: 606 IGGKQALETVQRLLPVLCQ-AHGLTPAQVVAIASHDGGKQALETVQRLLPVLC--QAHGL 662
Query: 528 RPD-SVTYGTLINGLQRVDREEDAFRIFGQ 556
PD V + G Q ++ + + Q
Sbjct: 663 TPDQVVAIASNGGGKQALETVQRLLPVLCQ 692
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 6e-06
Identities = 54/359 (15%), Positives = 97/359 (27%), Gaps = 39/359 (10%)
Query: 207 TIVISGLCQINRADEAYRLFLKMKDSGCSPDFV-AYNALLNGFCKLRRVDEALALLRSFE 265
I G A A R L +P V A + G L V L
Sbjct: 160 KIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLP---VLC 216
Query: 266 KD-GFVPR-LGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPD-VVLYGVMIRGLSEAG 322
+ G P + + + G + + + PD VV I G
Sbjct: 217 QAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQ--AHGLPPDQVVAIASNIGGKQALE 274
Query: 323 KVKDAMKLLSDMRERGIVPDTYC-YNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTF 381
V+ L + G+ PD + G L + + + + P+
Sbjct: 275 TVQRL--LPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLT--PD-QVV 329
Query: 382 TILICGMCRN--GMVDDAQKLFNKMEKAGCFP-SVGMFNALIDGLCKAGELEKANLLFYK 438
I + V + + G P V + G +++ L
Sbjct: 330 AIASHDGGKQALETVQRLLPVLCQA--HGLTPDQVVAIASNGGGKQALETVQRL-LPVLC 386
Query: 439 MEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIIT 498
G P + ++ G ++Q ++ C A + ++
Sbjct: 387 QAHGLTPDQVVAIASNGG-KQALETVQRLLPVLCQAHGLTPDQ--------------VVA 431
Query: 499 YNSLINGFCKVGNINGALKLFKELQLKGLRPDSV-TYGTLINGLQRVDREEDAFRIFGQ 556
S G + + L + Q GL P V + G Q ++ + + Q
Sbjct: 432 IASHDGGKQALETVQRLLPVLC--QTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQ 488
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 43.1 bits (101), Expect = 4e-04
Identities = 33/244 (13%), Positives = 63/244 (25%), Gaps = 24/244 (9%)
Query: 107 GYYKVGDCEKALESFGKMKEFDCQPD-VYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCL 165
G + ++ L + PD V + + L V + L
Sbjct: 540 GKQALETVQRLLPVLCQAHGLT--PDQVVAIASNGGGKQALETVQRLLPVLCQAHGLT-Q 596
Query: 166 PNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEA--- 222
+V + I G + + +L + G +
Sbjct: 597 VQVVAIASNIGGKQALETVQRLLPVLCQ-AHGLTPAQVVAIASHDGGKQALETVQRLLPV 655
Query: 223 YRLFLKMKDSGCSPDFV-AYNALLNGFCKLRRVDEALALLRSFEKD-GFVP-RLGSYSCL 279
+ G +PD V A + G L V L + G ++ + +
Sbjct: 656 LC-----QAHGLTPDQVVAIASNGGGKQALETVQRLLP---VLCQAHGLTQEQVVAIASN 707
Query: 280 IDGLFRAKRYDEAYAWYRKMFEEKIEPD-VVLYGVMIRGLSEAGKVKDAMKLLSDMRERG 338
G + + + PD VV G V+ + +L + G
Sbjct: 708 NGGKQALETVQRLLPVLCQAHG--LTPDQVVAIASNGGGKQALETVQRLLPVLC--QAHG 763
Query: 339 IVPD 342
+ P
Sbjct: 764 LTPA 767
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 53.6 bits (128), Expect = 7e-08
Identities = 35/232 (15%), Positives = 81/232 (34%), Gaps = 13/232 (5%)
Query: 108 YYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPN 167
+ +G ++ + ++K P+ + V +R L V + +K + P
Sbjct: 9 AFYIGSYQQCINEAQRVKPSS--PERDVERDVF--LYRAYLAQRKYGVVLDEIKPSSAPE 64
Query: 168 IVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVI-SGLCQINRADEAYRLF 226
+ + L+ + + + LD R + T+ ++ S D A R
Sbjct: 65 LQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTL 124
Query: 227 LKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSF-EKDGFVPRLGSYSCLIDGLFR 285
+ C + KL R+D A L+ ++D + +
Sbjct: 125 HQGDSLEC------MAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAG 178
Query: 286 AKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRER 337
++ +AY +++M +K P ++L G+ + A +L + ++
Sbjct: 179 GEKLQDAYYIFQEM-ADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 47.0 bits (111), Expect = 1e-05
Identities = 33/206 (16%), Positives = 64/206 (31%), Gaps = 19/206 (9%)
Query: 108 YYKVGDCEKALESFGKMKEFDCQP-DVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLP 166
+ + + + +I F Q AL ++ L C
Sbjct: 75 LASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLEC-- 132
Query: 167 NIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQI----NRADEA 222
++ + L K + ++A K L +M T T + + + + +A
Sbjct: 133 ----MAMTVQILLKLDRLDLARKELKKMQD---QDEDATLTQLATAWVSLAAGGEKLQDA 185
Query: 223 YRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLR-SFEKDGFVPRLGSYSCLID 281
Y +F +M D CSP + N R + A +L+ + +KD P L+
Sbjct: 186 YYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET--LINLVV 242
Query: 282 GLFRAKRYDEAYAWYRKMFEEKIEPD 307
+ E Y ++
Sbjct: 243 LSQHLGKPPEVTNRYLSQLKD-AHRS 267
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 47/271 (17%), Positives = 98/271 (36%), Gaps = 39/271 (14%)
Query: 108 YYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQ-LFLLALAVYYEMVKLNCLP 166
+++ +++ + + P + + L ++++ A+ Y ++L P
Sbjct: 43 HFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK--P 98
Query: 167 NIV-TFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKF-TYTIVISGLCQINRADEA-- 222
+ + + L L +G E A++ Q P+ + + + + L + R +EA
Sbjct: 99 DFIDGYINLAAALVAAGDMEGAVQAYVSALQ--YNPDLYCVRSDLGNLLKALGRLEEAKA 156
Query: 223 -YRLFLKMKDSGCSPDFV-AYNALLNGFCKLRRVDEALALLR-SFEKDGFVPRL-GSYSC 278
Y ++ + P+F A++ L F + A+ + D P +Y
Sbjct: 157 CYLKAIETQ-----PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD---PNFLDAYIN 208
Query: 279 LIDGLFRAKRYDEAYAWYRKMFEEKIEPD--VVLYGVMIRG--LSEAGKVKDAMKLLSDM 334
L + L A+ +D A A Y + + P+ VV E G + A+
Sbjct: 209 LGNVLKEARIFDRAVAAYLRALS--LSPNHAVVHGN---LACVYYEQGLIDLAIDTY--- 260
Query: 335 RERGIV--PDTY-CYNALIKGFCDLGLLDQA 362
R I P Y L + G + +A
Sbjct: 261 -RRAIELQPHFPDAYCNLANALKEKGSVAEA 290
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 42.9 bits (101), Expect = 4e-04
Identities = 69/492 (14%), Positives = 142/492 (28%), Gaps = 78/492 (15%)
Query: 102 FVLISGYYKVGDCEKALESFGKMKEFD-----------CQPDVYIYNAVLNIAFRKQLFL 150
F L Y GD +A K ++ C +Y + LN+ F
Sbjct: 121 FWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFR 180
Query: 151 LALAVYYEMVKLNCLPNIVTFSLLING--LSKSGKTEVAIKMLDEMTQRGILPNKFTYTI 208
+++ + + + G + + A + E + +
Sbjct: 181 KDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALM--VDAKCYEAFD 238
Query: 209 VISGLCQINRADEAYRLFLKMKDSGCSPDFVA----YNALLNGFCKLRRVDEALALLRSF 264
+ + +E + + D Y LN + A L S
Sbjct: 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSI 298
Query: 265 EKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPD-VVLYGVMIRGLSEAGK 323
C D LF R+ + A K+ +I+P + +Y + + L E+G+
Sbjct: 299 NGLE--KSSDLLLCKADTLFVRSRFIDVLAITTKIL--EIDPYNLDVYPLHLASLHESGE 354
Query: 324 VKDAM----KLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQA-----RSLQVEIWKRDS 374
L+ E+ T+ + + + + +A +S ++
Sbjct: 355 KNKLYLISNDLVDRHPEK---AVTWLAVGIY--YLCVNKISEARRYFSKSSTMD------ 403
Query: 375 LPNT--------HTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALI---DGL 423
P H+F I G D A + A F G +
Sbjct: 404 -PQFGPAWIGFAHSFAIE-------GEHDQAISAYTTA--ARLFQ--GTHLPYLFLGMQH 451
Query: 424 CKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKI 483
+ G + A + + L L++ G +K+ +QT + + A +
Sbjct: 452 MQLGNILLA-NEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHF------QNALLL 504
Query: 484 LMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSV-TYGTLINGLQ 542
+ + +S P T+ +L + + K+ + A+ Q L + + +
Sbjct: 505 VKK-TQSNEKPWAATWANLGHAYRKLKMYDAAIDALN--QGLLLSTNDANVHTAIALVYL 561
Query: 543 RVDREEDAFRIF 554
A
Sbjct: 562 HKKIPGLAITHL 573
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 4e-04
Identities = 29/134 (21%), Positives = 50/134 (37%), Gaps = 10/134 (7%)
Query: 233 GCSPDFV-AYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSC-LIDGLFRAKRYD 290
G P + N L N + ++EA+ L R + P + L L + +
Sbjct: 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQ 60
Query: 291 EAYAWYRKMFEEKIEPD-VVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPD-TYCYNA 348
EA Y++ +I P Y M L E V+ A++ + + I P ++
Sbjct: 61 EALMHYKEAI--RISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQ--INPAFADAHSN 116
Query: 349 LIKGFCDLGLLDQA 362
L D G + +A
Sbjct: 117 LASIHKDSGNIPEA 130
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 4e-04
Identities = 37/243 (15%), Positives = 73/243 (30%), Gaps = 51/243 (20%)
Query: 108 YYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPN 167
K G ++A + F K+ + + P +L
Sbjct: 104 LLKQGKLDEAEDDFKKVLKSN--PSEN-------------------EEKEAQSQLIKSDE 142
Query: 168 IVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPN----KFTYTIVISGLCQINRADEAY 223
+ SG AI LD++ + + + + +A
Sbjct: 143 MQRLRSQALNAFGSGDYTAAIAFLDKILE--VCVWDAELRELRAECFIKEGEPRKAISDL 200
Query: 224 RLFLKMKDSGCSPDFV-AYNALLNGFCKLRRVDEALALLR-----------SFEKDGFVP 271
+ K+K D A+ + + +L + +L+ +R F V
Sbjct: 201 KAASKLK-----NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK 255
Query: 272 RLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMI---RG--LSEAGKVKD 326
+L + L R RY +A + Y + + EP + Y V S+ K +
Sbjct: 256 KLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVE 313
Query: 327 AMK 329
A++
Sbjct: 314 AIR 316
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 767 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.98 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.91 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.9 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.9 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.9 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.88 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.88 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.88 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.88 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.86 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.85 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.84 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.84 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.83 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.83 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.82 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.82 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.82 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.81 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.81 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.81 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.81 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.77 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.77 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.77 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.77 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.74 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.74 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.73 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.71 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.71 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.7 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.69 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.69 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.69 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.69 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.68 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.68 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.67 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.67 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.66 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.66 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.66 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.65 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.63 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.63 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.62 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.62 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.61 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.61 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.6 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.59 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.59 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.59 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.58 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.57 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.57 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.57 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.57 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.56 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.56 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.56 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.54 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.53 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.52 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.52 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.49 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.48 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.47 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.46 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.44 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.42 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.4 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.4 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.38 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.38 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.38 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.38 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.37 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.36 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.35 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.31 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.31 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.31 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.3 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.3 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.29 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.27 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.27 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.27 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.26 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.25 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.24 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.24 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.24 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.24 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.22 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.21 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.2 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.19 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.18 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.16 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.14 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.14 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.13 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.12 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.11 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.1 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.09 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.09 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.07 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.07 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.07 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.07 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.06 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.05 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.03 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.02 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.02 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.02 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.01 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.01 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.0 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.99 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.99 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.99 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.98 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.98 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.96 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.94 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.94 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.93 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.93 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.92 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.91 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.9 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.89 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.89 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.88 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.88 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.88 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.88 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.87 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.86 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.85 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.85 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.84 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.82 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.81 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.8 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.79 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.79 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.78 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.77 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.77 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.76 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.75 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.74 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.74 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.73 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.72 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.72 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.71 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.71 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.7 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.7 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.69 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.68 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.68 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.65 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.64 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.62 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.61 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.6 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.59 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.57 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.56 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.53 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.5 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.47 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.45 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.44 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.42 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.41 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.35 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.32 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.32 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.3 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.3 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.27 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.21 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.18 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.16 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.14 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.13 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.11 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.05 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.0 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.96 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.85 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.73 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.73 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.65 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.56 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.56 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.53 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.51 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.43 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.42 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.41 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.92 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.88 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.73 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.69 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.67 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.62 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.3 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.27 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.15 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.75 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.7 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 95.6 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.45 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 95.27 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 94.97 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 94.89 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 94.87 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.7 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 94.67 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.63 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 94.1 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 93.83 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 93.83 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 92.2 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 91.66 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.02 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 90.95 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 90.22 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 89.94 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 89.63 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 89.6 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 89.43 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 87.75 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 86.59 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 84.18 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 84.11 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 84.11 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 83.02 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 82.9 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 82.72 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 82.44 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 81.72 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 81.12 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-40 Score=363.56 Aligned_cols=522 Identities=10% Similarity=-0.033 Sum_probs=375.6
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHH
Q 047305 144 FRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAY 223 (767)
Q Consensus 144 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 223 (767)
.+.|.+..+...+..+. .++...|+.++..+.+.|++++|..+|+++... .|+..++..++.+|.+.|++++|.
T Consensus 64 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHH
Confidence 34444444444444332 256667777777777777777777777777643 456677777777777777777777
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047305 224 RLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEK 303 (767)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~ 303 (767)
.+|+++... +++..+++.++.+|.+.|++++|.++|+++.. +.. ....+...++ ...+
T Consensus 138 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~~~~~~-----------~~~~ 195 (597)
T 2xpi_A 138 CLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNP-----FRK----DEKNANKLLM-----------QDGG 195 (597)
T ss_dssp HHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCT-----TC--------------C-----------CCSS
T ss_pred HHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCC-----ccc----cccccccccc-----------cccc
Confidence 777766432 45666777777777777777777777764211 110 0000000000 1123
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH--H-HHHHHhCCCCCCHHH
Q 047305 304 IEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARS--L-QVEIWKRDSLPNTHT 380 (767)
Q Consensus 304 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~--~-~~~~~~~~~~~~~~~ 380 (767)
..++..+|+.++.+|.+.|++++|.++|++|.+.+.. +...+..+...+...+..+.+.. + +..+...+..+...+
T Consensus 196 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 274 (597)
T 2xpi_A 196 IKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSL 274 (597)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHH
Confidence 3446778888888888888888888888888876433 45555555544433322222111 1 333334344344556
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcch
Q 047305 381 FTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHD 460 (767)
Q Consensus 381 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (767)
|+.++..|.+.|++++|..+|+++.+. .++..++..++.+|.+.|++++|..+|+++.. ..+.+
T Consensus 275 ~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------~~~~~ 338 (597)
T 2xpi_A 275 YMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILE--------------IDPYN 338 (597)
T ss_dssp HHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------HCTTC
T ss_pred HHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--------------cCccc
Confidence 677788888888999999999888765 36888889999999999999999999988852 12335
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 047305 461 KASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLING 540 (767)
Q Consensus 461 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 540 (767)
..++..++.++...|++++|..+++++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+... .+..+|+.++.+
T Consensus 339 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~ 416 (597)
T 2xpi_A 339 LDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP-QFGPAWIGFAHS 416 (597)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 5677888888889999999999999887653 44788889999999999999999999999987632 256789999999
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHH
Q 047305 541 LQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAI 620 (767)
Q Consensus 541 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 620 (767)
|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++++..|.++.++..++.+|.+.|++++|+
T Consensus 417 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 495 (597)
T 2xpi_A 417 FAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAI 495 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHH
Confidence 999999999999999998764 4577888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh-hh----cCCCCC-ccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHH
Q 047305 621 QGLLEM-DF----KLNDFQ-LAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFL 694 (767)
Q Consensus 621 ~~~~~~-~~----~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 694 (767)
+.+.++ .. ...|++ ..+|..++.+|.+.|++++|++.++++.+.+ |.++.++..++.+|.+.|++++|.++|+
T Consensus 496 ~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 574 (597)
T 2xpi_A 496 NHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLH 574 (597)
T ss_dssp HHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 998884 22 224554 5679999999999999999999999999887 7789999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHh
Q 047305 695 YTLKNGFILRPRVCNYLLRSLL 716 (767)
Q Consensus 695 ~~~~~~~~~~~~~~~~l~~~l~ 716 (767)
++++.. |+.......+..++
T Consensus 575 ~~l~~~--p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 575 ESLAIS--PNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHC--TTCHHHHHHHHHTT
T ss_pred HHHhcC--CCChHHHHHHHHHH
Confidence 998854 77665555554443
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-40 Score=360.75 Aligned_cols=505 Identities=12% Similarity=-0.009 Sum_probs=298.7
Q ss_pred CCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 047305 76 PNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAV 155 (767)
Q Consensus 76 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 155 (767)
.+.+..+...+..+. .++...|+.++..|.+.|++++|+.+|++|.. ..|+..++..++.+|.+.|++++|..+
T Consensus 66 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 66 DGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 344444444444332 24667889999999999999999999999985 357888899999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---------------CCCCChhhHHHHHHHHHccCCHh
Q 047305 156 YYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQR---------------GILPNKFTYTIVISGLCQINRAD 220 (767)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------~~~p~~~~~~~li~~~~~~g~~~ 220 (767)
|+++... +++..+++.++.+|.+.|++++|.++|+++... +..++..+|+.++.+|.+.|+++
T Consensus 140 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 140 LTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 9988654 578889999999999999999999999853221 12234666777777777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH--HH-HHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHH
Q 047305 221 EAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEAL--AL-LRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYR 297 (767)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~--~~-~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 297 (767)
+|.++|+++.+.+.. +...+..+...+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|..+|+
T Consensus 218 ~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 218 RAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 777777777664321 3344444444333222221111 11 2333333323333445555666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 047305 298 KMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPN 377 (767)
Q Consensus 298 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 377 (767)
++... .++..+++.++..|.+.|++++|..+|+++.+.+.. +..++..++.++...|++++|..+++.+.+..+ .+
T Consensus 297 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~ 372 (597)
T 2xpi_A 297 SINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRHP-EK 372 (597)
T ss_dssp TSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TS
T ss_pred HhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc-cc
Confidence 66544 346666666666666666666666666666655432 455566666666666666666666666664432 45
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCC
Q 047305 378 THTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNR 457 (767)
Q Consensus 378 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (767)
..++..++..|.+.|++++|..+|+++.+... .+..+|+.++.+|.+.|++++|+++|+++.
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------------- 434 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAA----------------- 434 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------------
Confidence 55666666666666666666666666655432 245566666666666666666666665553
Q ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 047305 458 VHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTL 537 (767)
Q Consensus 458 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 537 (767)
+.+ +.+..+|..++.+|.+.|++++|.++|+++.+... .+..+|..+
T Consensus 435 -------------------------------~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l 481 (597)
T 2xpi_A 435 -------------------------------RLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ-YDPLLLNEL 481 (597)
T ss_dssp -------------------------------HTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CCHHHHHHH
T ss_pred -------------------------------HhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHH
Confidence 332 12444555555555555555555555555554421 144455555
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhC----CCCCC--HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHH
Q 047305 538 INGLQRVDREEDAFRIFGQMPQN----GCTPS--PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFL 611 (767)
Q Consensus 538 ~~~~~~~~~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 611 (767)
+..|.+.|++++|..+|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.|+++++..|.++.++..++.+|.
T Consensus 482 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 561 (597)
T 2xpi_A 482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYL 561 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 55555555555555555555443 33444 4455555555555555555555555555555555555555555555
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHH
Q 047305 612 QKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGL 645 (767)
Q Consensus 612 ~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~ 645 (767)
..|++++|.+.+.+... ..|+++.++..++.+|
T Consensus 562 ~~g~~~~A~~~~~~~l~-~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 562 HKKIPGLAITHLHESLA-ISPNEIMASDLLKRAL 594 (597)
T ss_dssp HTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHh-cCCCChHHHHHHHHHH
Confidence 55555555555555221 2355555555555554
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-29 Score=256.48 Aligned_cols=360 Identities=13% Similarity=0.066 Sum_probs=176.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 047305 282 GLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQ 361 (767)
Q Consensus 282 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 361 (767)
.+.+.|++++|...++++....+. +...+..+...+...|++++|...++...+.. +.+..++..+...+...|++++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 344445555555555444443222 23334444444444555555555554444432 1234444444444545555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 047305 362 ARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEI 441 (767)
Q Consensus 362 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 441 (767)
|...++.+.+..+ .+...+..++..+.+.|++++|...++++.+..+. +...+..+...+...|++++|...|+++
T Consensus 86 A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a-- 161 (388)
T 1w3b_A 86 AIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKA-- 161 (388)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHH--
T ss_pred HHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHH--
Confidence 5555444444332 23334444444555555555555555544443211 2233344444444444444444444443
Q ss_pred CCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 047305 442 GKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKE 521 (767)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 521 (767)
.+.. +.+..+|..+..++...|++++|+..|++
T Consensus 162 ----------------------------------------------l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 194 (388)
T 1w3b_A 162 ----------------------------------------------IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEK 194 (388)
T ss_dssp ----------------------------------------------HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred ----------------------------------------------HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3331 11344455555555555555555555555
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCcc
Q 047305 522 LQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDD 601 (767)
Q Consensus 522 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 601 (767)
+...+.. +...+..+...+...|++++|...++++.+.. +.+..++..++.++.+.|++++|++.|+++++..|.++.
T Consensus 195 al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 272 (388)
T 1w3b_A 195 AVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD 272 (388)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Confidence 5544211 23344555555555555555555555554432 223445555555555555555555555555555555555
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 047305 602 ESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLC 681 (767)
Q Consensus 602 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 681 (767)
++..++.++.+.|++++|+..+.+... ..|.++.++..++.++...|++++|+..++++++.. |.+..++..++.+|.
T Consensus 273 ~~~~l~~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 350 (388)
T 1w3b_A 273 AYCNLANALKEKGSVAEAEDCYNTALR-LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQ 350 (388)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh-hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence 555555555555555555555555221 135555555555555555555555555555555543 444555555555555
Q ss_pred hcCChhHHHHHHHHHHH
Q 047305 682 KRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 682 ~~g~~~~A~~~~~~~~~ 698 (767)
+.|++++|...|+++++
T Consensus 351 ~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 351 QQGKLQEALMHYKEAIR 367 (388)
T ss_dssp TTTCCHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHh
Confidence 55555555555555554
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=8.8e-29 Score=256.47 Aligned_cols=366 Identities=13% Similarity=0.051 Sum_probs=279.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 047305 351 KGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELE 430 (767)
Q Consensus 351 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 430 (767)
..+.+.|++++|...+..+.+..+ .+...+..+...+...|++++|...++...+..+ .+..+|..+...+.+.|+++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCHH
Confidence 334445555555555555554432 2344444555555556666666666655555432 24556666666666666666
Q ss_pred HHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 047305 431 KANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVG 510 (767)
Q Consensus 431 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 510 (767)
+|...|+++.. ..+.+...+..++..+...|++++|...|+++.+..+ .+...+..+...+...|
T Consensus 85 ~A~~~~~~al~--------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g 149 (388)
T 1w3b_A 85 EAIEHYRHALR--------------LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALG 149 (388)
T ss_dssp HHHHHHHHHHH--------------HCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHH--------------cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcc
Confidence 66666665531 1223444566666666666666667777766666532 24566778889999999
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHH
Q 047305 511 NINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWL 590 (767)
Q Consensus 511 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 590 (767)
++++|...|+++...... +..++..+...+...|++++|...|+++++.+ +.+...+..+..++...|++++|...|+
T Consensus 150 ~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 227 (388)
T 1w3b_A 150 RLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYL 227 (388)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999987422 46789999999999999999999999999864 4467788999999999999999999999
Q ss_pred HHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCh
Q 047305 591 QYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTP 670 (767)
Q Consensus 591 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 670 (767)
++++..|.++.++..++.++...|++++|+..+.+... ..|.++.+|..++.+|.+.|++++|++.|+++++.. |.++
T Consensus 228 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~ 305 (388)
T 1w3b_A 228 RALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE-LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHA 305 (388)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccH
Confidence 99999999999999999999999999999999998432 468888899999999999999999999999999987 8899
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhhcCCccHHHHHHHHHHHHHcCCCCCCc
Q 047305 671 PSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRV-CNYLLRSLLFSKDNKKVHAYHLLCRMKSVGYDLDAC 743 (767)
Q Consensus 671 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 743 (767)
.++..++.++...|++++|+..++++++. .|+... +..+...+. ..|+ +++|...++++.+. .|+..
T Consensus 306 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~-~~g~-~~~A~~~~~~a~~~--~p~~~ 373 (388)
T 1w3b_A 306 DSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQ-QQGK-LQEALMHYKEAIRI--SPTFA 373 (388)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHH-TTTC-CHHHHHHHHHHHTT--CTTCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHH-HcCC-HHHHHHHHHHHHhh--CCCCH
Confidence 99999999999999999999999999864 466544 444555555 8888 99999999999864 66643
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6e-28 Score=252.82 Aligned_cols=204 Identities=18% Similarity=0.221 Sum_probs=115.2
Q ss_pred HHHHHHHHHhCCCCcCH-HHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCC---------HHH
Q 047305 82 YWQTLDELRSGNVSVVS-DVFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQL---------FLL 151 (767)
Q Consensus 82 a~~~l~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~---------~~~ 151 (767)
+..+.+++.+.+....+ .+++.+|.+|++.|++++|+++|++|.+.|++||..+||+||.+|++.+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 34444555555544444 34666677777777777777777777777777777777777777665443 455
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHH
Q 047305 152 ALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKD 231 (767)
Q Consensus 152 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 231 (767)
|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 047305 232 SGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFR 285 (767)
Q Consensus 232 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 285 (767)
.|+.||..||++||.+|++.|+.++|.+++++|.+.+..|+..||+.++..|..
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 555555555555555555555555555555555555555555555555555543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.6e-26 Score=243.62 Aligned_cols=464 Identities=11% Similarity=-0.049 Sum_probs=309.9
Q ss_pred hhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 047305 203 KFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDG 282 (767)
Q Consensus 203 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 282 (767)
...+......+.+.|++++|+..|+++.+.+ |+..++..+..++.+.|++++|...++++.+.. +.+..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 3455556666666666666666666666543 566666666666666666666666666666543 2234556666666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047305 283 LFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQA 362 (767)
Q Consensus 283 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 362 (767)
+...|++++|...|+++...++. +......++..+........+.+.+..+...+..|+...+..-. +
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------~----- 150 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDF-NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAK------E----- 150 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSC-CGGGTHHHHHHHHHHHHHHHHTTC--------------------------------
T ss_pred HHHHhhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhh------H-----
Confidence 66666666666666666655432 32333333333333222333333333222222222211111000 0
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHh
Q 047305 363 RSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCK---AGELEKANLLFYKM 439 (767)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~ 439 (767)
+ .......|+.......+..+...... .....+.+...+......+.. .|++++|...|+++
T Consensus 151 ---~--~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 215 (514)
T 2gw1_A 151 ---R--KDKQENLPSVTSMASFFGIFKPELTF----------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKA 215 (514)
T ss_dssp -----------CCCCHHHHHHHHTTSCCCCCC----------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHH
T ss_pred ---H--HhhccCCchhHHHHHHHhhcCHHHHH----------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 0 00001112222211111110000000 000001124455555555554 89999999999988
Q ss_pred hc-----C-CCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHH
Q 047305 440 EI-----G-KNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNIN 513 (767)
Q Consensus 440 ~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 513 (767)
.. . ..|+.. ...+.+...+..++..+...|++++|...++++.+..+. ...+..++.++...|+++
T Consensus 216 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~ 287 (514)
T 2gw1_A 216 ARLFEEQLDKNNEDE------KLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDST 287 (514)
T ss_dssp HHHHHHHTTTSTTCH------HHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCT
T ss_pred HHHhhhhhccCcccc------ccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHH
Confidence 63 1 011000 001455678889999999999999999999999887544 788889999999999999
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047305 514 GALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYL 593 (767)
Q Consensus 514 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 593 (767)
+|+..++++..... .+...+..+...+...|++++|...++++.+.. +.+...+..++.++...|++++|...|++++
T Consensus 288 ~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 365 (514)
T 2gw1_A 288 EYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAK 365 (514)
T ss_dssp TGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999997642 356788899999999999999999999998864 4467788889999999999999999999999
Q ss_pred hccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcc------chHHHHHHHhh---cCCHHHHHHHHHHHHHc
Q 047305 594 RDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLA------PYTIWLIGLCQ---DGQVKEALNIFSVLVEC 664 (767)
Q Consensus 594 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~------~~~~l~~~~~~---~g~~~~A~~~~~~~~~~ 664 (767)
+..|.++.++..++.++...|++++|+..+.+... ..|.++. ++..++.+|.. .|++++|+..++++++.
T Consensus 366 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~ 444 (514)
T 2gw1_A 366 RKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE-LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL 444 (514)
T ss_dssp HHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH
T ss_pred HHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999988422 1244443 79999999999 99999999999999998
Q ss_pred CCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 047305 665 KAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNY 710 (767)
Q Consensus 665 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 710 (767)
. |.++.++..++.+|...|++++|...|+++++.. |+......
T Consensus 445 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~ 487 (514)
T 2gw1_A 445 D-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA--RTMEEKLQ 487 (514)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSHHHHHH
T ss_pred C-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc--cccHHHHH
Confidence 7 7888999999999999999999999999999855 77655444
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=250.66 Aligned_cols=186 Identities=16% Similarity=0.251 Sum_probs=136.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCC---------HhHHHHHHHHHHHCCCCCCHHH
Q 047305 170 TFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINR---------ADEAYRLFLKMKDSGCSPDFVA 240 (767)
Q Consensus 170 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---------~~~a~~~~~~~~~~~~~~~~~~ 240 (767)
.++.+|.+|++.|++++|+++|++|.+.|+.||..+|+++|.+|++.+. .++|.++|++|...|+.||..|
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 3555666666666666666666666666666666666666666655433 5677777777777777777777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 047305 241 YNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSE 320 (767)
Q Consensus 241 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 320 (767)
|++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 047305 321 AGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCD 355 (767)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 355 (767)
.|++++|.++|++|.+.|..|+..||+.++..|..
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 77777777777777777777777777777777664
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.8e-25 Score=236.06 Aligned_cols=460 Identities=10% Similarity=-0.038 Sum_probs=328.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047305 167 NIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLN 246 (767)
Q Consensus 167 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 246 (767)
....+......+.+.|++++|...|+++.+.+ |+..+|..+..++...|++++|...++++.+.+ +.+..++..+..
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 81 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHH
Confidence 35567788889999999999999999999875 789999999999999999999999999998864 336678999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 047305 247 GFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKD 326 (767)
Q Consensus 247 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 326 (767)
++.+.|++++|...|+++.+.+. ++......++..+........+.+.+..+...+..|+...+.......
T Consensus 82 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------- 152 (514)
T 2gw1_A 82 ANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERK-------- 152 (514)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC-------------------------------
T ss_pred HHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHH--------
Confidence 99999999999999999998763 345555566665555544445544444444333233322222111000
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHH
Q 047305 327 AMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCR---NGMVDDAQKLFNK 403 (767)
Q Consensus 327 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~ 403 (767)
......|+.......+..+...... .......+...+......+.. .|++++|+.++++
T Consensus 153 --------~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 214 (514)
T 2gw1_A 153 --------DKQENLPSVTSMASFFGIFKPELTF----------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTK 214 (514)
T ss_dssp ------------CCCCHHHHHHHHTTSCCCCCC----------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHH
T ss_pred --------hhccCCchhHHHHHHHhhcCHHHHH----------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHH
Confidence 0111222322222111111100000 000001223444444444443 6777777777777
Q ss_pred HHH-----cCCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHH
Q 047305 404 MEK-----AGCF--------PSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQ 470 (767)
Q Consensus 404 ~~~-----~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 470 (767)
+.+ .... .+..++..+...+...|++++|...|+++.. ..+. ...+..++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--------------~~~~-~~~~~~l~~~ 279 (514)
T 2gw1_A 215 AARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE--------------LFPR-VNSYIYMALI 279 (514)
T ss_dssp HHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH--------------HCCC-HHHHHHHHHH
T ss_pred HHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--------------hCcc-HHHHHHHHHH
Confidence 766 2111 1245666777778888888888888877741 1122 6677778888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 047305 471 YCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDA 550 (767)
Q Consensus 471 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A 550 (767)
+...|++++|...++++.+..+ .+...+..+..++...|++++|+..++++...... +...+..+...+...|++++|
T Consensus 280 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A 357 (514)
T 2gw1_A 280 MADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDC 357 (514)
T ss_dssp HHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888888877643 36678888999999999999999999999987433 566788899999999999999
Q ss_pred HHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCcc------chHHHHHHHHh---cCCHHHHHH
Q 047305 551 FRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDD------ESMKSIEEFLQ---KGEVENAIQ 621 (767)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~---~g~~~~A~~ 621 (767)
...++++.+.. +.+..++..++.++.+.|++++|...|+++++..|.++. ++..++.++.. .|++++|+.
T Consensus 358 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~ 436 (514)
T 2gw1_A 358 ETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATN 436 (514)
T ss_dssp HHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHH
T ss_pred HHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHH
Confidence 99999998753 446778888999999999999999999999999888876 88899999999 999999999
Q ss_pred HHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHH
Q 047305 622 GLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKL 676 (767)
Q Consensus 622 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 676 (767)
.+.+... ..|.++.++..++.+|...|++++|...|+++++.+ |.++..+..+
T Consensus 437 ~~~~a~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~ 489 (514)
T 2gw1_A 437 LLEKASK-LDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA-RTMEEKLQAI 489 (514)
T ss_dssp HHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSHHHHHHHH
T ss_pred HHHHHHH-hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc-cccHHHHHHH
Confidence 9988432 358888889999999999999999999999999987 6666666554
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-24 Score=233.78 Aligned_cols=265 Identities=12% Similarity=0.017 Sum_probs=217.4
Q ss_pred CCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 047305 427 GELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGF 506 (767)
Q Consensus 427 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 506 (767)
|++++|..+++++......+... ...-...+..+...+...|++++|...++++.+.. |+...+..+...+
T Consensus 216 ~~~~~A~~~~~~~l~~~p~~~~~-------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~ 286 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSANTVDDPL-------RENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTL 286 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCCHHH-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCCCcchh-------hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHH
Confidence 57889999998886211100000 00013356777888899999999999999998874 4578888999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHH
Q 047305 507 CKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAF 586 (767)
Q Consensus 507 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 586 (767)
...|++++|+..++++..... .+..++..+...+...|++++|...++++.+.. +.+...+..++.++...|++++|.
T Consensus 287 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 364 (537)
T 3fp2_A 287 ADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESE 364 (537)
T ss_dssp CCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999998743 256789999999999999999999999998864 445678889999999999999999
Q ss_pred HHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHh-hhcCCCCCccc------hHHHHHHHhhc----------C
Q 047305 587 SLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEM-DFKLNDFQLAP------YTIWLIGLCQD----------G 649 (767)
Q Consensus 587 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~p~~~~~------~~~l~~~~~~~----------g 649 (767)
..|+++++..|.++.++..++.++...|++++|+..+.+. ... |.+... +..++.+|... |
T Consensus 365 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 442 (537)
T 3fp2_A 365 AFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE--EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEE 442 (537)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHH
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHh
Confidence 9999999999999999999999999999999999999983 322 333332 44556888888 9
Q ss_pred CHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 047305 650 QVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRV 707 (767)
Q Consensus 650 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 707 (767)
++++|+..++++++.. |.++.++..++.+|...|++++|...|+++++.. |+...
T Consensus 443 ~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~ 497 (537)
T 3fp2_A 443 KFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA--RTMDE 497 (537)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CHH
T ss_pred HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCcHH
Confidence 9999999999999987 7889999999999999999999999999999854 55443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.2e-23 Score=218.61 Aligned_cols=366 Identities=13% Similarity=0.044 Sum_probs=261.3
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 047305 292 AYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWK 371 (767)
Q Consensus 292 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 371 (767)
+...+.++....+ .+...+..++..+.+.|++++|+.+|+++.+... .+..++..+..++...|++++|...++.+.+
T Consensus 11 ~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 11 VDLGTENLYFQSM-ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp ------------C-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccccH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3344444444332 2455666677777777777777777777766532 2566666677777777777777777777666
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H---HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchh
Q 047305 372 RDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPS-V---GMFNALIDGLCKAGELEKANLLFYKMEIGKNPTL 447 (767)
Q Consensus 372 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 447 (767)
.++ .+..++..++..|.+.|++++|...|+++.+.. |+ . ..+..++..+...
T Consensus 89 ~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~--------------------- 144 (450)
T 2y4t_A 89 LKM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQ--------------------- 144 (450)
T ss_dssp HCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHH---------------------
T ss_pred cCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHH---------------------
Confidence 553 345666666677777777777777777766543 32 2 3344443332211
Q ss_pred hhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 047305 448 FLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGL 527 (767)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 527 (767)
.+..++..+...|++++|...|+++.+.. +.+...+..++.+|...|++++|+..|+++....
T Consensus 145 ---------------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 207 (450)
T 2y4t_A 145 ---------------RLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK- 207 (450)
T ss_dssp ---------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-
T ss_pred ---------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 12334556788899999999999998774 3477888999999999999999999999998763
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHH------------HHHHHhcCChhHHHHHHHHHHhc
Q 047305 528 RPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSL------------MTWSCRRRKFSLAFSLWLQYLRD 595 (767)
Q Consensus 528 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~ 595 (767)
+.+..++..++.++...|++++|+..++++.+.. +.+...+..+ +..+.+.|++++|...|+++++.
T Consensus 208 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~ 286 (450)
T 2y4t_A 208 NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 286 (450)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3367789999999999999999999999998753 3344444444 77888999999999999999999
Q ss_pred cCCCcc----chHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChH
Q 047305 596 ISGRDD----ESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPP 671 (767)
Q Consensus 596 ~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 671 (767)
.|.++. .+..++.++.+.|++++|+..+.+... ..|+++.+|..++.+|...|++++|+..++++++.. |.++.
T Consensus 287 ~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~-~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 364 (450)
T 2y4t_A 287 EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ-MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQ 364 (450)
T ss_dssp CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHH
T ss_pred CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHH
Confidence 888754 667889999999999999998888432 258888889999999999999999999999999886 77888
Q ss_pred hHHHHHHH------------HHhcC-----ChhHHHHHHHH-HHHCCCCCCH
Q 047305 672 SCVKLIHG------------LCKRG-----YLDLAMDVFLY-TLKNGFILRP 705 (767)
Q Consensus 672 ~~~~l~~~------------~~~~g-----~~~~A~~~~~~-~~~~~~~~~~ 705 (767)
++..++.+ |...| ..+++.+.|++ +++ ..||.
T Consensus 365 ~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~--~~pd~ 414 (450)
T 2y4t_A 365 IREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ--WHPDN 414 (450)
T ss_dssp HHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHH--SCGGG
T ss_pred HHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHH--hCCCC
Confidence 88888844 44444 55677777776 444 34553
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.3e-24 Score=231.98 Aligned_cols=427 Identities=12% Similarity=0.051 Sum_probs=285.5
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 047305 275 SYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFC 354 (767)
Q Consensus 275 ~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 354 (767)
.+..+...+.+.|++++|...|++++...+. +...+..+..++.+.|++++|+..++++.+.+.. +..++..+...+.
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~ 104 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHH
Confidence 3444455555555555555555555554332 4455555555555555555555555555554322 4455555555555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHHcCC
Q 047305 355 DLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKA------GCFPSVGMFNALIDGLCKAGE 428 (767)
Q Consensus 355 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~ 428 (767)
..|++++|...++ .....+.+. ...+..+...+....|...++.+... ...|+.. .+..+....+
T Consensus 105 ~~g~~~~A~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~ 175 (537)
T 3fp2_A 105 SLGNFTDAMFDLS-VLSLNGDFD----GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNT----SLASFFGIFD 175 (537)
T ss_dssp HHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHH----HHHHHHHTSC
T ss_pred HcCCHHHHHHHHH-HHhcCCCCC----hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHh----HHHHHHHhcC
Confidence 5566666655554 222221111 11122333334445566666655432 1123322 2233444455
Q ss_pred HHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHH--------HhcCCHHHHHHHHHHHHHcCCCCCH----
Q 047305 429 LEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQY--------CTAGLIHKAYKILMQLAESGNLPDI---- 496 (767)
Q Consensus 429 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~g~~~~A~~~~~~~~~~~~~~~~---- 496 (767)
.+.+...+.... ...+........+...+ ...|++++|...++++.+..+. +.
T Consensus 176 ~~~~~~~~~~~~--------------~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~ 240 (537)
T 3fp2_A 176 SHLEVSSVNTSS--------------NYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRE 240 (537)
T ss_dssp HHHHHHTSCCCC--------------SSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHH
T ss_pred hHHHHHHHhhcc--------------ccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhH
Confidence 544443332221 11111112222222222 2235789999999999876432 22
Q ss_pred ---hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHH
Q 047305 497 ---ITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLM 573 (767)
Q Consensus 497 ---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 573 (767)
.++..+...+...|++++|+..++++... .|+...+..+...+...|++++|...++++.+.. +.+..++..++
T Consensus 241 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 317 (537)
T 3fp2_A 241 NAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRG 317 (537)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHH
Confidence 34667778888999999999999999987 5567788899999999999999999999998864 45688899999
Q ss_pred HHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHH
Q 047305 574 TWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKE 653 (767)
Q Consensus 574 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 653 (767)
.++...|++++|...|+++++..|.++.++..++.++...|++++|+..+.+... ..|.++.++..++.+|...|++++
T Consensus 318 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~ 396 (537)
T 3fp2_A 318 QMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKL-KFPTLPEVPTFFAEILTDRGDFDT 396 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCTHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHhCCHHH
Confidence 9999999999999999999999999999999999999999999999999998432 358888889999999999999999
Q ss_pred HHHHHHHHHHcCCCCChHh------HHHHHHHHHhc----------CChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHh
Q 047305 654 ALNIFSVLVECKAIVTPPS------CVKLIHGLCKR----------GYLDLAMDVFLYTLKNGFILRPRV-CNYLLRSLL 716 (767)
Q Consensus 654 A~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~l~ 716 (767)
|+..++++++.. |.++.. +..++.+|... |++++|+..|+++++.. |+... +..+...+.
T Consensus 397 A~~~~~~a~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~ 473 (537)
T 3fp2_A 397 AIKQYDIAKRLE-EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD--PRSEQAKIGLAQLKL 473 (537)
T ss_dssp HHHHHHHHHHHH-HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 999999998765 333322 45567888888 99999999999999854 66544 444555554
Q ss_pred hcCCccHHHHHHHHHHHHHc
Q 047305 717 FSKDNKKVHAYHLLCRMKSV 736 (767)
Q Consensus 717 ~~~~~~~~~a~~~~~~~~~~ 736 (767)
..|+ +++|...+++..+.
T Consensus 474 -~~g~-~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 474 -QMEK-IDEAIELFEDSAIL 491 (537)
T ss_dssp -HTTC-HHHHHHHHHHHHHH
T ss_pred -Hhcc-HHHHHHHHHHHHHh
Confidence 8888 99999999998875
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5e-23 Score=218.06 Aligned_cols=364 Identities=14% Similarity=0.055 Sum_probs=289.9
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047305 255 DEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDM 334 (767)
Q Consensus 255 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 334 (767)
..+...+..+.... +.+...+..+...+.+.|++++|..+|+++....+. +...+..++..+...|++++|...|+++
T Consensus 9 ~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 9 SGVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34444555554432 335678899999999999999999999999987543 7889999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 047305 335 RERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNT---HTFTILICGMCRNGMVDDAQKLFNKMEKAGCFP 411 (767)
Q Consensus 335 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 411 (767)
.+.+.. +..++..+...|...|++++|...++.+.+..+ .+. ..+..++..+..
T Consensus 87 l~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~--------------------- 143 (450)
T 2y4t_A 87 IQLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEM--------------------- 143 (450)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHH---------------------
T ss_pred HhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHH---------------------
Confidence 987544 688999999999999999999999999998764 333 455555444321
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047305 412 SVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESG 491 (767)
Q Consensus 412 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 491 (767)
..+..+...+...|++++|+..|+++.. ..+.+...+..++.++...|++++|...|+++.+..
T Consensus 144 --~~~~~~a~~~~~~~~~~~A~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 207 (450)
T 2y4t_A 144 --QRLRSQALNAFGSGDYTAAIAFLDKILE--------------VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK 207 (450)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHH--------------HCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------hCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2234456677889999999999999852 234567889999999999999999999999998764
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hhHHHH------------HHHHHhcCCHHHHHHHHHHhh
Q 047305 492 NLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDS-VTYGTL------------INGLQRVDREEDAFRIFGQMP 558 (767)
Q Consensus 492 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l------------~~~~~~~~~~~~A~~~~~~~~ 558 (767)
+.+..+|..++.+|...|++++|+..|+++... .|+. ..+..+ +..+...|++++|..+|++++
T Consensus 208 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l 284 (450)
T 2y4t_A 208 -NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVM 284 (450)
T ss_dssp -CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 347889999999999999999999999999976 4443 334444 788999999999999999998
Q ss_pred hCCCCCC-----HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 047305 559 QNGCTPS-----PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDF 633 (767)
Q Consensus 559 ~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~ 633 (767)
+. .|+ ..++..++.++.+.|++++|...++++++..|.++.++..++.++...|++++|+..+.+... ..|+
T Consensus 285 ~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-~~p~ 361 (450)
T 2y4t_A 285 KT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE-HNEN 361 (450)
T ss_dssp HH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TSSS
T ss_pred hc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCcc
Confidence 84 343 447888899999999999999999999999999999999999999999999999999988532 4699
Q ss_pred CccchHHHHHH------------HhhcC-----CHHHHHHHHHH-HHHcC
Q 047305 634 QLAPYTIWLIG------------LCQDG-----QVKEALNIFSV-LVECK 665 (767)
Q Consensus 634 ~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~-~~~~~ 665 (767)
++.++..++.+ |...| +.+++.+.|++ +++..
T Consensus 362 ~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~ 411 (450)
T 2y4t_A 362 DQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWH 411 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhC
Confidence 98888888843 55555 66788888887 45543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=7e-21 Score=194.83 Aligned_cols=323 Identities=12% Similarity=-0.008 Sum_probs=230.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047305 343 TYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDG 422 (767)
Q Consensus 343 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 422 (767)
...+..+...+...|++++|...++.+.+..+ .+..++..+...+...|++++|+..++++.+.... +...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHH
Confidence 34555566666666666666666666666543 34556666666666666666666666666654322 45566666666
Q ss_pred HHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCc---chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhH
Q 047305 423 LCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRV---HDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITY 499 (767)
Q Consensus 423 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 499 (767)
+...|++++|...|+++. ...+ .+...+..+..... ...+
T Consensus 81 ~~~~~~~~~A~~~~~~~~--------------~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~ 123 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVL--------------KSNPSEQEEKEAESQLVKADE-----------------------MQRL 123 (359)
T ss_dssp HHHHTCHHHHHHHHHHHH--------------TSCCCHHHHHHHHHHHHHHHH-----------------------HHHH
T ss_pred HHHcCChHHHHHHHHHHH--------------hcCCcccChHHHHHHHHHHHH-----------------------HHHH
Confidence 666666666666666653 1112 22222222211110 1112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhc
Q 047305 500 NSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRR 579 (767)
Q Consensus 500 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 579 (767)
..+...+...|++++|+..++++..... .+...+..+...+...|++++|...++++.+.. +.+..++..++.++...
T Consensus 124 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 201 (359)
T 3ieg_A 124 RSQALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQL 201 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 3346778888999999999999887642 356678888888999999999999999988753 55677888888889999
Q ss_pred CChhHHHHHHHHHHhccCCCccchH------------HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcc----chHHHHH
Q 047305 580 RKFSLAFSLWLQYLRDISGRDDESM------------KSIEEFLQKGEVENAIQGLLEMDFKLNDFQLA----PYTIWLI 643 (767)
Q Consensus 580 g~~~~A~~~~~~~~~~~p~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~----~~~~l~~ 643 (767)
|++++|...|+++++..|.++..+. .++..+...|++++|+..+.+... ..|.++. .+..++.
T Consensus 202 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~la~ 280 (359)
T 3ieg_A 202 GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK-TEPSVAEYTVRSKERICH 280 (359)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCCSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCchHHHHHHHHHHHH
Confidence 9999999999999998888887654 337778899999999999888432 2366553 3557889
Q ss_pred HHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 047305 644 GLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNY 710 (767)
Q Consensus 644 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 710 (767)
+|...|++++|+..++++++.. |.++.++..++.+|...|++++|...|+++++. .|+......
T Consensus 281 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~ 344 (359)
T 3ieg_A 281 CFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIRE 344 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHH
Confidence 9999999999999999999886 778999999999999999999999999999874 477554333
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-20 Score=193.43 Aligned_cols=333 Identities=13% Similarity=0.016 Sum_probs=274.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047305 307 DVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILIC 386 (767)
Q Consensus 307 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 386 (767)
+...+..+...+...|++++|+..|+++.+.... +..++..+...+...|++++|...++.+.+..+ .+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHH
Confidence 4567888999999999999999999999887543 688999999999999999999999999998764 46788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHH
Q 047305 387 GMCRNGMVDDAQKLFNKMEKAGCFP----SVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKA 462 (767)
Q Consensus 387 ~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (767)
.+...|++++|...++++.+.. | +...+..+...+. ..
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~------------------------------------~~ 121 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADE------------------------------------MQ 121 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHH------------------------------------HH
T ss_pred HHHHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHH------------------------------------HH
Confidence 9999999999999999998764 4 2233333322211 11
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 047305 463 SLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQ 542 (767)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 542 (767)
....++..+...|++++|...++++.+..+ .+...+..+..++...|++++|+..++++.... +.+..++..+...+.
T Consensus 122 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 199 (359)
T 3ieg_A 122 RLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYY 199 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 233456778899999999999999988743 477888999999999999999999999999874 336778899999999
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCHhhHH------------HHHHHHHhcCChhHHHHHHHHHHhccCCCccc----hHHH
Q 047305 543 RVDREEDAFRIFGQMPQNGCTPSPAVYK------------SLMTWSCRRRKFSLAFSLWLQYLRDISGRDDE----SMKS 606 (767)
Q Consensus 543 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~----~~~l 606 (767)
..|++++|...++++.+.. +.+...+. .++..+.+.|++++|...|+++++..|.++.. +..+
T Consensus 200 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 278 (359)
T 3ieg_A 200 QLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERI 278 (359)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 9999999999999998753 33333332 23666889999999999999999999998754 4468
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 047305 607 IEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRG 684 (767)
Q Consensus 607 ~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 684 (767)
+.++...|++++|+..+.+... ..|.++.++..++.+|...|++++|+..|+++++.+ |.++.++..+..++...+
T Consensus 279 a~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 279 CHCFSKDEKPVEAIRICSEVLQ-MEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHHH
Confidence 9999999999999999998432 368889999999999999999999999999999987 777888887777665443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-17 Score=182.17 Aligned_cols=419 Identities=13% Similarity=0.110 Sum_probs=268.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047305 170 TFSLLINGLSKSGKTEVAIKMLDEMTQRGI--LPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNG 247 (767)
Q Consensus 170 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 247 (767)
--...++.|...|.+.+|+++++++.-.+- .-+...-+.++.+..+. +..+..++..+.... + ...+...
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~I 1058 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANI 1058 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHH
Confidence 335556667777777777777777763310 11223344455555444 445555554444321 1 2235666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047305 248 FCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDA 327 (767)
Q Consensus 248 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 327 (767)
+...|.+++|..+|++... .....+.++ -..+++++|.++.+++. +..+|..+..++.+.|++++|
T Consensus 1059 ai~lglyEEAf~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHhCCCHHHHHHHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHH
Confidence 6777888888888777521 111122222 25677777777777552 466777888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047305 328 MKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKA 407 (767)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 407 (767)
.+.|.+. -|...|..++..+.+.|++++|.+.+....+....+ ...+.++.+|++.+++++...+. +
T Consensus 1125 IdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~--~Idt~LafaYAKl~rleele~fI----~- 1191 (1630)
T 1xi4_A 1125 IDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAKTNRLAELEEFI----N- 1191 (1630)
T ss_pred HHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc--cccHHHHHHHHhhcCHHHHHHHH----h-
Confidence 8887553 266777778888888888888888887776655322 23334777788877777533332 2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047305 408 GCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQL 487 (767)
Q Consensus 408 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 487 (767)
.++...|..+...|...|++++|..+|... ..|..++..+.+.|+++.|.+.+++.
T Consensus 1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----------------------~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------------------SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----------------------hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 246666777778888888888888888664 26777788888888888888888776
Q ss_pred HHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHh
Q 047305 488 AESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPA 567 (767)
Q Consensus 488 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 567 (767)
. +..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++..+... +-...
T Consensus 1248 ~------n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~g 1315 (1630)
T 1xi4_A 1248 N------STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMG 1315 (1630)
T ss_pred C------CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhH
Confidence 2 5677877777888888877777765532 2245556677788888888888888887776543 33444
Q ss_pred hHHHHHHHHHhc--CChhHHHHHHHHHHhccC-----CCccchHHHHHHHHhcCCHHHHHHHHHHh-hh----------c
Q 047305 568 VYKSLMTWSCRR--RKFSLAFSLWLQYLRDIS-----GRDDESMKSIEEFLQKGEVENAIQGLLEM-DF----------K 629 (767)
Q Consensus 568 ~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----------~ 629 (767)
.|..+..+|.+- ++..++.+.|..-+...| .+...|..++..|.+.|++++|+..+.+- .. -
T Consensus 1316 mftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i 1395 (1630)
T 1xi4_A 1316 MFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDII 1395 (1630)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHh
Confidence 555555555443 456666666665555444 55666777788888888888887444432 11 0
Q ss_pred CCCCCccchHHHHHHHhhcC---------------CHHHHHHHHH
Q 047305 630 LNDFQLAPYTIWLIGLCQDG---------------QVKEALNIFS 659 (767)
Q Consensus 630 ~~p~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~ 659 (767)
..+.++..|...+..|...+ +++++..+++
T Consensus 1396 ~kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1396 TKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred cccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 13566667777777777655 6666666665
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.90 E-value=5.9e-18 Score=186.82 Aligned_cols=178 Identities=15% Similarity=0.100 Sum_probs=96.4
Q ss_pred ChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHhCCCCcCHHH----------------------
Q 047305 43 NPQVGFRFFIWAAKRKRLRSFASNSAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDV---------------------- 100 (767)
Q Consensus 43 ~~~~a~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~---------------------- 100 (767)
+|+.|..|-.-+.+..+ +.-....++..+...+.+.++..+|-+..+.+-+.....
T Consensus 525 ~P~~~~~fa~~L~~~~~--p~~d~~~ivd~f~~~~~iq~~t~fLld~lk~n~~e~~~LQTrlle~Nl~~~pqvadail~~ 602 (1630)
T 1xi4_A 525 SPDQGQQFAQMLVQDEE--PLADITQIVDVFMEYNLIQQCTAFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAILGN 602 (1630)
T ss_pred ChHHHHHHHHHHhcCCC--CccCHHHHHHHHHhcCcHHHHHHHHHHHHhCCChhhhhHhHHHHHHhhccchhHHHHHHhc
Confidence 68888888777666543 344466688888888888888888877776654322222
Q ss_pred -------HHHHHHHHHhcCChhHHHHHHHHhhhC------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 047305 101 -------FFVLISGYYKVGDCEKALESFGKMKEF------DCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPN 167 (767)
Q Consensus 101 -------~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~ 167 (767)
+..+...|-+.|-++.|++.|..+... ....++. -+ ..|...=+.+.+.+.+++|.+.++..+
T Consensus 603 ~~fthyd~~~IA~LCE~aGl~qrale~y~d~~dikR~~~~~~~~~~~---~l-~~~fg~l~~~~s~~~l~~~l~~n~~qn 678 (1630)
T 1xi4_A 603 QMFTHYDRAHIAQLCEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPE---WL-VNYFGSLSVEDSLECLRAMLSANIRQN 678 (1630)
T ss_pred CccccccHHHHHHHHHHcCcHHHHHHhcCCHHHHHHHhhccCcCCHH---HH-HHHHhcCCHHHHHHHHHHHHHHhHhhh
Confidence 224555666677777777776544320 0011111 11 122223345666666666665433322
Q ss_pred HHHH-------------HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHH
Q 047305 168 IVTF-------------SLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLK 228 (767)
Q Consensus 168 ~~~~-------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 228 (767)
..+. ..++..+-+.+.++...-.+..+.. +.-|+......|.++++.|+..+..++.++
T Consensus 679 lq~vvqva~ky~~~lg~~~li~~fe~~~~~egl~y~l~siv~--~s~d~~vhfkyi~aa~~~~q~~everi~re 750 (1630)
T 1xi4_A 679 LQICVQVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVN--FSQDPDVHFKYIQAACKTGQIKEVERICRE 750 (1630)
T ss_pred hhhhhhHHHHHHhhcCHHHHHHHHHHhcchhhHHHHHHhhcc--ccCChHHHHHHHHHHHHhCCchhhhHHhcc
Confidence 2222 2233333333333333322222222 334677777888888888877776665443
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.9e-18 Score=179.39 Aligned_cols=352 Identities=13% Similarity=0.003 Sum_probs=253.9
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCH
Q 047305 307 DVVLYGVMIRGLSE----AGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCD----LGLLDQARSLQVEIWKRDSLPNT 378 (767)
Q Consensus 307 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 378 (767)
+...+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|...++...+.+ +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 45555555555555 566666666666665543 44555556666665 566666666666666543 34
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhhcCCCchhhhh
Q 047305 379 HTFTILICGMCR----NGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCK----AGELEKANLLFYKMEIGKNPTLFLR 450 (767)
Q Consensus 379 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~ 450 (767)
..+..|...|.. .+++++|+..|++..+.| ++..+..+...|.. .+++++|+..|++...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~--------- 179 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE--------- 179 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH---------
Confidence 455556666655 566777777777766653 45566666666665 5677777777766641
Q ss_pred hccCCCCcchHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHH
Q 047305 451 LSQGGNRVHDKASLQTMVEQYCT----AGLIHKAYKILMQLAESGNLPDIITYNSLINGFCK----VGNINGALKLFKEL 522 (767)
Q Consensus 451 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 522 (767)
..++..+..+...|.. .++.++|...|++..+.+ +...+..+...|.. .+++++|+.+|++.
T Consensus 180 -------~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a 249 (490)
T 2xm6_A 180 -------QGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQS 249 (490)
T ss_dssp -------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred -------CCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 1245566666666666 677777888887777653 45667777777775 78889999999888
Q ss_pred HHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhc-----CChhHHHHHHHHHH
Q 047305 523 QLKGLRPDSVTYGTLINGLQR----VDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRR-----RKFSLAFSLWLQYL 593 (767)
Q Consensus 523 ~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~ 593 (767)
.+.+ +...+..+...|.. .+++++|+..|+++.+.| +...+..+..+|... +++++|...|+++.
T Consensus 250 ~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~ 323 (490)
T 2xm6_A 250 AEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSA 323 (490)
T ss_dssp HTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH
Confidence 8764 45566677777776 788999999999988654 456667777777776 89999999999988
Q ss_pred hccCCCccchHHHHHHHHhcC---CHHHHHHHHHHhhhcCCCCCccchHHHHHHHhh----cCCHHHHHHHHHHHHHcCC
Q 047305 594 RDISGRDDESMKSIEEFLQKG---EVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQ----DGQVKEALNIFSVLVECKA 666 (767)
Q Consensus 594 ~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 666 (767)
+. .++.++..++..|...| ++++|++.+.+... ..++.++..++.+|.. .+++++|+.+|+++.+.+
T Consensus 324 ~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~---~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~- 397 (490)
T 2xm6_A 324 EQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA---KGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG- 397 (490)
T ss_dssp HT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred hc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-
Confidence 75 45677888888888766 78889888888543 2456779999999998 799999999999998865
Q ss_pred CCChHhHHHHHHHHHh----cCChhHHHHHHHHHHHCC
Q 047305 667 IVTPPSCVKLIHGLCK----RGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 667 ~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 700 (767)
++.++..++.+|.. .+++++|...|+++++.+
T Consensus 398 --~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 398 --LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 46788999999998 899999999999998876
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.1e-18 Score=182.58 Aligned_cols=381 Identities=13% Similarity=0.010 Sum_probs=249.6
Q ss_pred cccHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHH
Q 047305 273 LGSYSCLIDGLFR----AKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSE----AGKVKDAMKLLSDMRERGIVPDTY 344 (767)
Q Consensus 273 ~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~ 344 (767)
...+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|...|++..+.| +..
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~ 112 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQ 112 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 3344444444444 455555555555555442 34455555555555 555555555555555543 344
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHH
Q 047305 345 CYNALIKGFCD----LGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCR----NGMVDDAQKLFNKMEKAGCFPSVGMF 416 (767)
Q Consensus 345 ~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~ 416 (767)
.+..+...|.. .+++++|...++...+.+ +...+..+...|.. .+++++|...|++..+.| ++..+
T Consensus 113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~ 186 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSC 186 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 44455555554 455666666666555543 34445555555554 556666666666666543 55566
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 047305 417 NALIDGLCK----AGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCT----AGLIHKAYKILMQLA 488 (767)
Q Consensus 417 ~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~ 488 (767)
..+...|.. .+++++|..+|++... ..++..+..+...+.. .+++++|...|++..
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~----------------~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~ 250 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSAT----------------SGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSA 250 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHH----------------CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 666666665 6666666666666531 1233455555666654 667777777777776
Q ss_pred HcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc-----CCHHHHHHHHHHhhh
Q 047305 489 ESGNLPDIITYNSLINGFCK----VGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRV-----DREEDAFRIFGQMPQ 559 (767)
Q Consensus 489 ~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~ 559 (767)
+.+ +...+..+...|.. .+++++|+..|++..+.| +...+..+...|... +++++|...++++.+
T Consensus 251 ~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~ 324 (490)
T 2xm6_A 251 EQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE 324 (490)
T ss_dssp TTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh
Confidence 653 45566667777776 788889999988887664 455667777777776 889999999999887
Q ss_pred CCCCCCHhhHHHHHHHHHhcC---ChhHHHHHHHHHHhccCCCccchHHHHHHHHh----cCCHHHHHHHHHHhhhcCCC
Q 047305 560 NGCTPSPAVYKSLMTWSCRRR---KFSLAFSLWLQYLRDISGRDDESMKSIEEFLQ----KGEVENAIQGLLEMDFKLND 632 (767)
Q Consensus 560 ~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~p 632 (767)
.+ +...+..+..+|...| ++++|++.|+++.+. .++.++..++..|.. .+++++|++.+.+... .
T Consensus 325 ~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~---~ 396 (490)
T 2xm6_A 325 QG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE---Q 396 (490)
T ss_dssp TT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH---T
T ss_pred cC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh---C
Confidence 64 4556677777777656 789999999999876 578888899999988 8999999999888543 3
Q ss_pred CCccchHHHHHHHhh----cCCHHHHHHHHHHHHHcCCC--CChHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047305 633 FQLAPYTIWLIGLCQ----DGQVKEALNIFSVLVECKAI--VTPPSCVKLIHGLCKRGYLDLAMDVFLYTL 697 (767)
Q Consensus 633 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 697 (767)
.++.++..|+.+|.. .+++++|..+|+++.+.+.. .++.+...++.++... .++|.+...+..
T Consensus 397 ~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~~--~~~a~~~a~~~~ 465 (490)
T 2xm6_A 397 GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQ--LQQAELLSQQYI 465 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHHH--HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHhH--HHHHHHHHHHHH
Confidence 356779999999998 89999999999999988621 2566666666655432 344444344333
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.4e-20 Score=187.27 Aligned_cols=290 Identities=10% Similarity=-0.050 Sum_probs=217.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047305 412 SVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESG 491 (767)
Q Consensus 412 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 491 (767)
+...+..++..+...|++++|..+|+++.. ..+.+...+..++..+...|++++|...++++.+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~--------------~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 86 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVME--------------KDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY 86 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHH--------------HCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------cCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 334455556666666677777666666541 122333445555666667777777777777776653
Q ss_pred CCCCHhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHH
Q 047305 492 NLPDIITYNSLINGFCKVG-NINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYK 570 (767)
Q Consensus 492 ~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 570 (767)
+.+...|..+...+...| ++++|...++++...... +...+..+...+...|++++|+..++++.+.. +.+...+.
T Consensus 87 -~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 163 (330)
T 3hym_B 87 -PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPML 163 (330)
T ss_dssp -TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHH
T ss_pred -cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHH
Confidence 235677888888888888 888899998888876422 45678888888888999999999999888753 33456667
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcC--------CCCCccchHHHH
Q 047305 571 SLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKL--------NDFQLAPYTIWL 642 (767)
Q Consensus 571 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~p~~~~~~~~l~ 642 (767)
.++.+|...|++++|.+.|+++++..|.++.++..++.++...|++++|+..+.+..... .|..+.++..++
T Consensus 164 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la 243 (330)
T 3hym_B 164 YIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLG 243 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHH
Confidence 788888899999999999999999999998888899999999999999988888732211 155566799999
Q ss_pred HHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhhcCCc
Q 047305 643 IGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRV-CNYLLRSLLFSKDN 721 (767)
Q Consensus 643 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~ 721 (767)
.+|...|++++|+..++++++.+ |.++.++..++.+|...|++++|...|+++++. .|+... +..+..++....|+
T Consensus 244 ~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 244 HVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhCc
Confidence 99999999999999999999887 778889999999999999999999999998764 466544 44444445335554
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.1e-20 Score=186.66 Aligned_cols=291 Identities=13% Similarity=-0.007 Sum_probs=224.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCC
Q 047305 377 NTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGN 456 (767)
Q Consensus 377 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 456 (767)
+...+..++..+...|++++|+.+++++.+.... +...+..++..+...|++++|...++++.. .
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--------------~ 85 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVD--------------L 85 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHH--------------H
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHH--------------h
Confidence 3445556666677777777777777777665432 444555566677777777777777777641 1
Q ss_pred CcchHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 047305 457 RVHDKASLQTMVEQYCTAG-LIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYG 535 (767)
Q Consensus 457 ~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 535 (767)
.+.+...+..++..+...| ++++|...|+++.+..+ .+...|..+..++...|++++|+..++++...... +...+.
T Consensus 86 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~ 163 (330)
T 3hym_B 86 YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPML 163 (330)
T ss_dssp CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHH
T ss_pred CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHH
Confidence 2334556677777777777 78888888887776642 35667888888999999999999999998876422 456677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcc---------CCCccchHHH
Q 047305 536 TLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDI---------SGRDDESMKS 606 (767)
Q Consensus 536 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------p~~~~~~~~l 606 (767)
.+...+...|++++|...++++.+.. +.+..++..++.++...|++++|...++++++.. |..+.++..+
T Consensus 164 ~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 242 (330)
T 3hym_B 164 YIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNL 242 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHH
Confidence 78888999999999999999998753 4567888888999999999999999999999765 6667788899
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHH-hcCC
Q 047305 607 IEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLC-KRGY 685 (767)
Q Consensus 607 ~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~ 685 (767)
+.++...|++++|+..+.+... ..|.++.++..++.+|...|++++|++.++++++.. |.++.++..++.++. ..|+
T Consensus 243 a~~~~~~g~~~~A~~~~~~a~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~ 320 (330)
T 3hym_B 243 GHVCRKLKKYAEALDYHRQALV-LIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGD 320 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH-HSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHhcCHHHHHHHHHHHHh-hCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCc
Confidence 9999999999999998888432 258888889999999999999999999999999887 778889999999884 5565
Q ss_pred hh
Q 047305 686 LD 687 (767)
Q Consensus 686 ~~ 687 (767)
.+
T Consensus 321 ~~ 322 (330)
T 3hym_B 321 SE 322 (330)
T ss_dssp --
T ss_pred hh
Confidence 43
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-17 Score=178.35 Aligned_cols=408 Identities=10% Similarity=0.019 Sum_probs=275.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047305 307 DVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILIC 386 (767)
Q Consensus 307 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 386 (767)
+...|..++. +.+.|++++|..+|+++.+.. +-+...|...+..+.+.|++++|..+|++++... |+...|..++.
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 5556666666 355667777777777766652 2255666666666666777777777777776654 35555555553
Q ss_pred H-HHhcCCHHHHHH----HHHHHHHc-CCCC-CHHHHHHHHHHHHH---------cCCHHHHHHHHHHhhcCCCchhhhh
Q 047305 387 G-MCRNGMVDDAQK----LFNKMEKA-GCFP-SVGMFNALIDGLCK---------AGELEKANLLFYKMEIGKNPTLFLR 450 (767)
Q Consensus 387 ~-~~~~g~~~~A~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~~~~~~~~~~ 450 (767)
. ....|+.+.|.+ +|+..... |..| +...|...+..... .|+++.|..+|++... .|.
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~--~P~---- 161 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV--NPM---- 161 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT--SCC----
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh--chh----
Confidence 2 234455555544 55555432 3332 45666666665544 6889999999998863 121
Q ss_pred hccCCCCcchHHHHHHHHHH-------------HHhcCCHHHHHHHHHHH------HHcC---CCCC--------HhhHH
Q 047305 451 LSQGGNRVHDKASLQTMVEQ-------------YCTAGLIHKAYKILMQL------AESG---NLPD--------IITYN 500 (767)
Q Consensus 451 ~~~~~~~~~~~~~~~~l~~~-------------~~~~g~~~~A~~~~~~~------~~~~---~~~~--------~~~~~ 500 (767)
......+...... ....+++..|..+++.. .+.. ..|+ ...|.
T Consensus 162 -------~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~ 234 (530)
T 2ooe_A 162 -------INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWK 234 (530)
T ss_dssp -------TTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHH
T ss_pred -------hhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHH
Confidence 0111122211111 01345677777777652 2211 1333 24555
Q ss_pred HHHHHHHhc----CCH----HHHHHHHHHHHHCCCCCChhhHHHHHHHHHh-------cCCHH-------HHHHHHHHhh
Q 047305 501 SLINGFCKV----GNI----NGALKLFKELQLKGLRPDSVTYGTLINGLQR-------VDREE-------DAFRIFGQMP 558 (767)
Q Consensus 501 ~l~~~~~~~----g~~----~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-------~~~~~-------~A~~~~~~~~ 558 (767)
..+...... ++. ..+..+|+++.... +-+...|..++..+.. .|+++ +|+.++++++
T Consensus 235 ~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al 313 (530)
T 2ooe_A 235 KYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAI 313 (530)
T ss_dssp HHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHH
Confidence 554332221 232 47788999998763 2256778888887775 68876 8999999998
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCc-cchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccc
Q 047305 559 QNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRD-DESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAP 637 (767)
Q Consensus 559 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~ 637 (767)
+.-.+.+...+..++..+.+.|++++|..+|+++++..|.++ .++...+..+.+.|+.++|++.+.+... ..|.+...
T Consensus 314 ~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~-~~~~~~~~ 392 (530)
T 2ooe_A 314 STLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE-DARTRHHV 392 (530)
T ss_dssp TTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CTTCCTHH
T ss_pred HHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh-ccCCchHH
Confidence 632345688899999999999999999999999999988885 5888889999999999999999988432 23555554
Q ss_pred hHHHHHH-HhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC--HHHHHHHHH
Q 047305 638 YTIWLIG-LCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGF-ILR--PRVCNYLLR 713 (767)
Q Consensus 638 ~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~--~~~~~~l~~ 713 (767)
+...+.. +...|++++|..+|+++++.. |.++..|..++..+.+.|+.++|+.+|++++..+. .|+ ..++...+.
T Consensus 393 ~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~ 471 (530)
T 2ooe_A 393 YVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA 471 (530)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 5555544 335899999999999999886 77899999999999999999999999999998642 222 225656666
Q ss_pred HHhhcCCccHHHHHHHHHHHHHc
Q 047305 714 SLLFSKDNKKVHAYHLLCRMKSV 736 (767)
Q Consensus 714 ~l~~~~~~~~~~a~~~~~~~~~~ 736 (767)
... ..|+ .+.+..+.+++.+.
T Consensus 472 ~e~-~~G~-~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 472 FES-NIGD-LASILKVEKRRFTA 492 (530)
T ss_dssp HHH-HSSC-HHHHHHHHHHHHHH
T ss_pred HHH-HcCC-HHHHHHHHHHHHHH
Confidence 655 7787 89999999988753
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.85 E-value=4.3e-20 Score=189.66 Aligned_cols=263 Identities=13% Similarity=-0.063 Sum_probs=159.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 047305 416 FNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPD 495 (767)
Q Consensus 416 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 495 (767)
+..+...+...|++++|...|+++.. ..+.+...+..++..+...|++++|...|+++.+.. +.+
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~--------------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~ 131 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQ--------------QDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDN 131 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--------------SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--------------hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCC
Confidence 44444445555555555555554431 122233444445555555555555555555554443 224
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH----------------HHHHHHHhcCCHHHHHHHHHHhhh
Q 047305 496 IITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYG----------------TLINGLQRVDREEDAFRIFGQMPQ 559 (767)
Q Consensus 496 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~----------------~l~~~~~~~~~~~~A~~~~~~~~~ 559 (767)
..++..++.+|...|++++|+..++++...... +...+. .+... ...|++++|...++++.+
T Consensus 132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~a~~ 209 (368)
T 1fch_A 132 QTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSL-LSDSLFLEVKELFLAAVR 209 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHH-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHH-hhcccHHHHHHHHHHHHH
Confidence 555566666666666666666666666654221 111111 12222 366777777777777766
Q ss_pred CCCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccch
Q 047305 560 NGCTP-SPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPY 638 (767)
Q Consensus 560 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~ 638 (767)
..... +..++..++.+|.+.|++++|+..|+++++..|.++.++..++.++...|++++|+..+.+... ..|.++.++
T Consensus 210 ~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~ 288 (368)
T 1fch_A 210 LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALE-LQPGYIRSR 288 (368)
T ss_dssp HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHH
T ss_pred hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCcHHHH
Confidence 43111 4667777777777777777777777777777777777777777777777777777777776321 246666677
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC-----------hHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047305 639 TIWLIGLCQDGQVKEALNIFSVLVECKAIVT-----------PPSCVKLIHGLCKRGYLDLAMDVFLYTL 697 (767)
Q Consensus 639 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 697 (767)
..++.+|.+.|++++|+..|+++++.. |.+ ..+|..++.+|...|++++|..++++.+
T Consensus 289 ~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 289 YNLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 777777777777777777777776654 333 5677777777777777777777766443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.84 E-value=5.2e-17 Score=174.96 Aligned_cols=436 Identities=10% Similarity=0.034 Sum_probs=295.6
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 047305 226 FLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIE 305 (767)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~ 305 (767)
|++..+.. +-+...|..++. +.+.|++++|..+|+++.+.. +.+...|..++..+.+.|++++|..+|++++...
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 34444432 336677888887 467888999999999988753 3356678888888888899999999999888764
Q ss_pred CCHHHHHHHHHHH-HhcCCHHHHHH----HHHHHHHC-CCCC-CHHHHHHHHHHHHh---------cCCHHHHHHHHHHH
Q 047305 306 PDVVLYGVMIRGL-SEAGKVKDAMK----LLSDMRER-GIVP-DTYCYNALIKGFCD---------LGLLDQARSLQVEI 369 (767)
Q Consensus 306 ~~~~~~~~l~~~~-~~~g~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~ 369 (767)
|+...|...+... ...|++++|.+ +|+..... |..| +...|...+..... .|+++.|..+|+..
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 5666777666533 34566666554 66665443 4433 45566666665544 56778888888887
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhh
Q 047305 370 WKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFL 449 (767)
Q Consensus 370 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 449 (767)
++.........|..........|. .+...++. ...+++..|..++..+.. ...
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~-----~~~ 209 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYET-----VMK 209 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHH-----HHH
T ss_pred HhchhhhHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHH-----HHH
Confidence 773111112223222211100110 11111111 123456667666655320 000
Q ss_pred hhccC-CCCcc--------hHHHHHHHHHHHHhc----CCH----HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----
Q 047305 450 RLSQG-GNRVH--------DKASLQTMVEQYCTA----GLI----HKAYKILMQLAESGNLPDIITYNSLINGFCK---- 508 (767)
Q Consensus 450 ~~~~~-~~~~~--------~~~~~~~l~~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 508 (767)
.+... ...++ ....|...+...... ++. ..+...|+++.... +.+...|..++..+..
T Consensus 210 ~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~ 288 (530)
T 2ooe_A 210 GLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKL 288 (530)
T ss_dssp HCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred HhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchh
Confidence 00000 00111 123444444333221 232 47788999888763 3367888888887775
Q ss_pred ---cCCHH-------HHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-H-hhHHHHHHH
Q 047305 509 ---VGNIN-------GALKLFKELQLKGLRP-DSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPS-P-AVYKSLMTW 575 (767)
Q Consensus 509 ---~g~~~-------~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~-~~~~~l~~~ 575 (767)
.|+++ +|..++++.... +.| +...|..++..+.+.|++++|..+|+++++. .|+ . .+|..++..
T Consensus 289 ~~~~g~~~~a~~~~~~A~~~~~~Al~~-~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~ 365 (530)
T 2ooe_A 289 LAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKF 365 (530)
T ss_dssp HHTTTCCHHHHHHHHHHHHHHHHHTTT-TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHH
T ss_pred hhhccchhhhhhhhHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHH
Confidence 78887 899999999862 234 4668889999999999999999999999984 443 3 578888888
Q ss_pred HHhcCChhHHHHHHHHHHhccCCCccchHHHHHH-HHhcCCHHHHHHHHHH-hhhcCCCCCccchHHHHHHHhhcCCHHH
Q 047305 576 SCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEE-FLQKGEVENAIQGLLE-MDFKLNDFQLAPYTIWLIGLCQDGQVKE 653 (767)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~A~~~~~~-~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 653 (767)
+.+.|++++|.++|+++++..|.....+...+.. +...|+.++|...+.+ +.. .|+++.+|..++..+.+.|+.++
T Consensus 366 ~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~ 443 (530)
T 2ooe_A 366 ARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNN 443 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHH
T ss_pred HHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhh
Confidence 8899999999999999999888777666655544 3468999999999988 443 48889999999999999999999
Q ss_pred HHHHHHHHHHcCCCCChH----hHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047305 654 ALNIFSVLVECKAIVTPP----SCVKLIHGLCKRGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 654 A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 700 (767)
|..+|++++..+ +.++. .|...+......|+.+.+..+++++++.-
T Consensus 444 Ar~~~~~al~~~-~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 444 TRVLFERVLTSG-SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHHHHSC-CSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 999999999875 33443 77778888888999999999999998753
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.2e-20 Score=188.70 Aligned_cols=263 Identities=12% Similarity=-0.002 Sum_probs=213.8
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 047305 460 DKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLIN 539 (767)
Q Consensus 460 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 539 (767)
+...+..++..+...|++++|...|+++.+..+ .+..+|..++.+|...|++++|+..|+++..... .+..++..++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 445678888999999999999999999988743 4778899999999999999999999999998742 25678899999
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCC-H----------hhHHHHHHHHHhcCChhHHHHHHHHHHhccCC--CccchHHH
Q 047305 540 GLQRVDREEDAFRIFGQMPQNGCTPS-P----------AVYKSLMTWSCRRRKFSLAFSLWLQYLRDISG--RDDESMKS 606 (767)
Q Consensus 540 ~~~~~~~~~~A~~~~~~~~~~~~~~~-~----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l 606 (767)
+|...|++++|+..++++.+.. |+ . .++..++.++.+.|++++|...|+++++..|. ++.++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 9999999999999999998742 22 2 22334577889999999999999999999999 88899999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 047305 607 IEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYL 686 (767)
Q Consensus 607 ~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 686 (767)
+.+|...|++++|+..+.+... ..|.++.+|..++.+|...|++++|+..|+++++.. |.++.++..++.+|...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALT-VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 9999999999999999998432 358888899999999999999999999999999987 77899999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCC-------------HHHHHHHHHHHhhcCCccHHHHHHHHHH
Q 047305 687 DLAMDVFLYTLKNGFILR-------------PRVCNYLLRSLLFSKDNKKVHAYHLLCR 732 (767)
Q Consensus 687 ~~A~~~~~~~~~~~~~~~-------------~~~~~~l~~~l~~~~~~~~~~a~~~~~~ 732 (767)
++|+..|+++++.. |+ ...+..+...+. ..|+ .+.+....++
T Consensus 298 ~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~-~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQ--RKSRNQQQVPHPAISGNIWAALRIALS-LMDQ-PELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHH--HCC------------CHHHHHHHHHHH-HHTC-HHHHHHHHTT
T ss_pred HHHHHHHHHHHHhC--cccCCCcccchhhhHHHHHHHHHHHHH-HcCc-HHHHHHHHHh
Confidence 99999999998743 33 344555666655 6676 6666665544
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=3.4e-19 Score=182.90 Aligned_cols=291 Identities=12% Similarity=-0.023 Sum_probs=229.7
Q ss_pred HHHcCCHHHHHH-HHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHH
Q 047305 423 LCKAGELEKANL-LFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNS 501 (767)
Q Consensus 423 ~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 501 (767)
+...|++++|+. .+.+...- .| .....+...+..++..+...|++++|...|+++.+.. +.+...|..
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~-~~---------~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 103 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQF-EE---------ENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQY 103 (368)
T ss_dssp -----------CHHHHCCCCC-CS---------SCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHH
T ss_pred hHHHHHHHHHHhhhhhHHHhc-CC---------CCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 344578888888 77765311 11 1112234567889999999999999999999999875 347788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHH-----------
Q 047305 502 LINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYK----------- 570 (767)
Q Consensus 502 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----------- 570 (767)
+..++...|++++|+..++++..... .+..++..++.++...|++++|...++++.+.. +.+...+.
T Consensus 104 l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 181 (368)
T 1fch_A 104 LGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGL 181 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC-----------
T ss_pred HHHHHHHCcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcc
Confidence 99999999999999999999998753 367789999999999999999999999998854 22222222
Q ss_pred -----HHHHHHHhcCChhHHHHHHHHHHhccCC--CccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHH
Q 047305 571 -----SLMTWSCRRRKFSLAFSLWLQYLRDISG--RDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLI 643 (767)
Q Consensus 571 -----~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~ 643 (767)
.+...+ ..|++++|...|+++++..|. ++.++..++.++...|++++|+..+.+... ..|.++.++..++.
T Consensus 182 ~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~l~~ 259 (368)
T 1fch_A 182 GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS-VRPNDYLLWNKLGA 259 (368)
T ss_dssp ----CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCcCCHHHHHHHHH
Confidence 233334 899999999999999999999 788889999999999999999999998432 25888888999999
Q ss_pred HHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC------------HHHHHHH
Q 047305 644 GLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILR------------PRVCNYL 711 (767)
Q Consensus 644 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------------~~~~~~l 711 (767)
+|...|++++|+..++++++.. |.++.++..++.+|...|++++|...|+++++.. |+ ...+..+
T Consensus 260 ~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~l 336 (368)
T 1fch_A 260 TLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ--RKSRGPRGEGGAMSENIWSTL 336 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HTC------CCCCCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCCCccccccchhhHHHHHH
Confidence 9999999999999999999987 7889999999999999999999999999998753 43 3456666
Q ss_pred HHHHhhcCCccHHHHHHHHHHH
Q 047305 712 LRSLLFSKDNKKVHAYHLLCRM 733 (767)
Q Consensus 712 ~~~l~~~~~~~~~~a~~~~~~~ 733 (767)
...+. ..|+ +++|..++++.
T Consensus 337 ~~~~~-~~g~-~~~A~~~~~~~ 356 (368)
T 1fch_A 337 RLALS-MLGQ-SDAYGAADARD 356 (368)
T ss_dssp HHHHH-HHTC-GGGHHHHHTTC
T ss_pred HHHHH-HhCC-hHhHHHhHHHH
Confidence 66666 7787 89998887653
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.7e-18 Score=179.24 Aligned_cols=390 Identities=11% Similarity=-0.043 Sum_probs=151.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C--CCC-CcccHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-
Q 047305 238 FVAYNALLNGFCKLRRVDEALALLRSFEKD-----G--FVP-RLGSYSCLIDGLFRAKRYDEAYAWYRKMFEE-----K- 303 (767)
Q Consensus 238 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-----~- 303 (767)
...|+.|...+...|++++|++.|++..+. + ..| ...+|..+..+|...|++++|...+++..+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345666666666666666666666655331 0 011 1234555555555555555555555554431 0
Q ss_pred CC-CCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHhCCCCCC
Q 047305 304 IE-PDVVLYGVMIRGLSEA--GKVKDAMKLLSDMRERGIVPDTYCYNALIKG---FCDLGLLDQARSLQVEIWKRDSLPN 377 (767)
Q Consensus 304 ~~-~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~ 377 (767)
.. ....++..+..++... +++++|+..|++..+..+. +...+..+..+ +...++.++|...++..++.++ .+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-DN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-SC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-cc
Confidence 00 1223344333333332 3455555555555543222 23333332222 2233444445555544444332 22
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhcc
Q 047305 378 THTFTILICGMCR----NGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQ 453 (767)
Q Consensus 378 ~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 453 (767)
..++..+...+.. .|++++|..++++...... .+..++..+...|...|++++|...+++..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al------------- 274 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKAL------------- 274 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHH-------------
Confidence 3333333322222 2344445555554444332 134444444555555555555555554442
Q ss_pred CCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 047305 454 GGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVT 533 (767)
Q Consensus 454 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 533 (767)
...+.+..++..++..|...+... ... ............+.++.|...++....... .+..+
T Consensus 275 -~~~p~~~~~~~~lg~~y~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~ 336 (472)
T 4g1t_A 275 -EYIPNNAYLHCQIGCCYRAKVFQV---------MNL-------RENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRV 336 (472)
T ss_dssp -HHSTTCHHHHHHHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCC
T ss_pred -HhCCChHHHHHHHHHHHHHHHHHh---------hhH-------HHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhh
Confidence 111222333333333322110000 000 000000000111224455555555554421 13345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHh--hHHHHHHH-HHhcCChhHHHHHHHHHHhccCCCccchHHHHHHH
Q 047305 534 YGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPA--VYKSLMTW-SCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEF 610 (767)
Q Consensus 534 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 610 (767)
+..+...+...|++++|+..|+++++....+... .+..+... +...|++++|+..|+++++..|........
T Consensus 337 ~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~----- 411 (472)
T 4g1t_A 337 CSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM----- 411 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH-----
T ss_pred hhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH-----
Confidence 5556666666666666666666665533222111 12222221 234556666666666666655544221110
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhH
Q 047305 611 LQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSC 673 (767)
Q Consensus 611 ~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 673 (767)
...+.+.+.+ ....+|.++.+|..+|.+|...|++++|++.|+++++.+ +.+|.+.
T Consensus 412 -----~~~l~~~~~~-~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~-~~~p~a~ 467 (472)
T 4g1t_A 412 -----KDKLQKIAKM-RLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESG-SLIPSAS 467 (472)
T ss_dssp -----HHHHHHHHHH-HHHHCC-CTTHHHHHHHHHHHHHHCC---------------------
T ss_pred -----HHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCCcHh
Confidence 1111111111 111235555555555555555555555555555555544 3334333
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=5e-19 Score=181.38 Aligned_cols=265 Identities=11% Similarity=-0.029 Sum_probs=220.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047305 412 SVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESG 491 (767)
Q Consensus 412 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 491 (767)
+...+..+...+.+.|++++|...|+++.. ..+.+...+..++..+...|++++|...|+++.+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 129 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAIL--------------QDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ 129 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHH--------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHH--------------hCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 345578888899999999999999998862 234567889999999999999999999999998874
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-h----------hHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 047305 492 NLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDS-V----------TYGTLINGLQRVDREEDAFRIFGQMPQN 560 (767)
Q Consensus 492 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~----------~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 560 (767)
+.+..+|..++.+|...|++++|+..++++.... |+. . .+..+...+...|++++|+.+++++++.
T Consensus 130 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 206 (365)
T 4eqf_A 130 -PNNLKALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ 206 (365)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Confidence 3367889999999999999999999999998763 332 2 2234578889999999999999999986
Q ss_pred CCC-CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchH
Q 047305 561 GCT-PSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYT 639 (767)
Q Consensus 561 ~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~ 639 (767)
... .+..++..++.+|...|++++|+..|+++++..|.++.++..++.+|...|++++|+..+.+... ..|.++.++.
T Consensus 207 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~ 285 (365)
T 4eqf_A 207 NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALE-IQPGFIRSRY 285 (365)
T ss_dssp SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHH
T ss_pred CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCchHHHH
Confidence 422 16889999999999999999999999999999999999999999999999999999999998432 3588899999
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHcCCCC------------ChHhHHHHHHHHHhcCChhHHHHHHHH
Q 047305 640 IWLIGLCQDGQVKEALNIFSVLVECKAIV------------TPPSCVKLIHGLCKRGYLDLAMDVFLY 695 (767)
Q Consensus 640 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 695 (767)
.++.+|...|++++|+..|+++++.. |. +..+|..++.++...|+.+.|..+.++
T Consensus 286 ~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 286 NLGISCINLGAYREAVSNFLTALSLQ-RKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHH-HCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999999999999999998764 22 367899999999999999999887765
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.3e-17 Score=163.05 Aligned_cols=262 Identities=7% Similarity=-0.051 Sum_probs=214.6
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcch-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhH
Q 047305 421 DGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHD-KASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITY 499 (767)
Q Consensus 421 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 499 (767)
+-....|++..|+..++++. ...+.+ ......+..+|...|+++.|+..++.. ..|+..++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~--------------~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~ 68 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVK--------------PSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAV 68 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSC--------------CCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc--------------cCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHH
Confidence 44567899999999988763 111122 345566789999999999999877542 35677788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHh
Q 047305 500 NSLINGFCKVGNINGALKLFKELQLKGLRPDS-VTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCR 578 (767)
Q Consensus 500 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 578 (767)
..+...+...|+.++|++.++++...+..|+. ..+..+..++...|++++|+..+++ +.+...+..++.+|.+
T Consensus 69 ~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~ 142 (291)
T 3mkr_A 69 RMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLK 142 (291)
T ss_dssp HHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHH
Confidence 88899999999999999999999987655654 4566777899999999999999987 4678889999999999
Q ss_pred cCChhHHHHHHHHHHhccCCCccchHHH--HHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHH
Q 047305 579 RRKFSLAFSLWLQYLRDISGRDDESMKS--IEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALN 656 (767)
Q Consensus 579 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 656 (767)
.|++++|.+.|+++++..|++....... +..+...|++++|+..+.++... .|+++.+++.++.++.+.|++++|++
T Consensus 143 ~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~ 221 (291)
T 3mkr_A 143 LDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEG 221 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999988865433322 24445569999999999995433 68999999999999999999999999
Q ss_pred HHHHHHHcCCCCChHhHHHHHHHHHhcCChhH-HHHHHHHHHHCCCCCCHHHHHH
Q 047305 657 IFSVLVECKAIVTPPSCVKLIHGLCKRGYLDL-AMDVFLYTLKNGFILRPRVCNY 710 (767)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~ 710 (767)
.++++++.+ |.++.++..++.++...|+.++ +.++++++++.. |+++....
T Consensus 222 ~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~--P~~~~~~d 273 (291)
T 3mkr_A 222 VLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH--RSHPFIKE 273 (291)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CCChHHHH
Confidence 999999997 8899999999999999999976 578999998754 88765544
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.82 E-value=9.8e-19 Score=173.40 Aligned_cols=371 Identities=12% Similarity=0.095 Sum_probs=190.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047305 285 RAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARS 364 (767)
Q Consensus 285 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 364 (767)
+.|++++|.+.++++. +..+|..++.++.+.|++++|++.|.+. +|..+|..++..+...|++++|..
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 4566788888887772 2347888888888888888888888542 366688888888888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCC
Q 047305 365 LQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKN 444 (767)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 444 (767)
.++...+. .++..+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 76666553 2456777788888888888888877774 267778888999999999999999888776
Q ss_pred chhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047305 445 PTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQL 524 (767)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 524 (767)
..|..++.++.+.|+++.|.+.+.++ .++.+|..++.+|...|+++.|......+
T Consensus 149 -----------------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-- 203 (449)
T 1b89_A 149 -----------------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-- 203 (449)
T ss_dssp -----------------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT--
T ss_pred -----------------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH--
Confidence 25778888999999999999999887 27889999999999999999996654442
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhc--CChhHHHHHHHHHHhccC-----
Q 047305 525 KGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRR--RKFSLAFSLWLQYLRDIS----- 597 (767)
Q Consensus 525 ~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~p----- 597 (767)
...+.....++..|.+.|++++|+.+++..+... +-....|..+..+|++- ++..+.++.|..-+...|
T Consensus 204 ---~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~ 279 (449)
T 1b89_A 204 ---VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAA 279 (449)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHH
T ss_pred ---HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 2233335568888999999999999999998654 45567777777777654 466666776666666666
Q ss_pred CCccchHHHHHHHHhcCCHHHHHHHHHHh-hhc----------CCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCC
Q 047305 598 GRDDESMKSIEEFLQKGEVENAIQGLLEM-DFK----------LNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKA 666 (767)
Q Consensus 598 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~----------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 666 (767)
.+...|..++..|.+.++++.|+..+.+- ... ..+.+...|...+..|. +...+++.-+..++...
T Consensus 280 ~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~- 356 (449)
T 1b89_A 280 EQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPR- 356 (449)
T ss_dssp HTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGG-
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhc-
Confidence 77888899999999999999998877763 220 13667777888888777 55566677777766432
Q ss_pred CCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCc
Q 047305 667 IVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDN 721 (767)
Q Consensus 667 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 721 (767)
-|+ ...+..+.+.|++.-+..+++.+... +....+.-+..++....+
T Consensus 357 -ld~---~r~v~~~~~~~~l~l~~~yl~~v~~~----n~~~vnealn~l~ieeed 403 (449)
T 1b89_A 357 -LDH---TRAVNYFSKVKQLPLVKPYLRSVQNH----NNKSVNESLNNLFITEED 403 (449)
T ss_dssp -CCH---HHHHHHHHHTTCTTTTHHHHHHHHTT----CCHHHHHHHHHHHHHTTC
T ss_pred -cCc---HHHHHHHHHcCCcHHHHHHHHHHHHh----hHHHHHHHHHHHHHhhhh
Confidence 222 34556778999999999999877643 445556555555545554
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.2e-18 Score=172.42 Aligned_cols=266 Identities=8% Similarity=-0.052 Sum_probs=223.1
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 047305 459 HDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLI 538 (767)
Q Consensus 459 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 538 (767)
.+...+..++..+...|++++|...|+++.+..+ .+...+..+..++...|++++|...++++.... +.+..++..+.
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 96 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALA 96 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHH
Confidence 3556678889999999999999999999988743 377888899999999999999999999999874 23667888999
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHH--------------HH-HHHhcCChhHHHHHHHHHHhccCCCccch
Q 047305 539 NGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSL--------------MT-WSCRRRKFSLAFSLWLQYLRDISGRDDES 603 (767)
Q Consensus 539 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 603 (767)
..+...|++++|...++++.+.. +.+...+..+ .. ++...|++++|...++++++..|.++.++
T Consensus 97 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 175 (327)
T 3cv0_A 97 VSHTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLH 175 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHH
Confidence 99999999999999999998753 2233333333 33 37788999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc
Q 047305 604 MKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKR 683 (767)
Q Consensus 604 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 683 (767)
..++.++...|++++|+..+.+... ..|.++.++..++.+|...|++++|+..++++++.. |.++.++..++.+|...
T Consensus 176 ~~la~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 176 ASLGVLYNLSNNYDSAAANLRRAVE-LRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHh
Confidence 9999999999999999999998432 358888889999999999999999999999999987 77899999999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCC-------------HHHHHHHHHHHhhcCCccHHHHHHHHHHH
Q 047305 684 GYLDLAMDVFLYTLKNGFILR-------------PRVCNYLLRSLLFSKDNKKVHAYHLLCRM 733 (767)
Q Consensus 684 g~~~~A~~~~~~~~~~~~~~~-------------~~~~~~l~~~l~~~~~~~~~~a~~~~~~~ 733 (767)
|++++|...++++++.. |+ +..+..+...+. ..|+ +++|..++++.
T Consensus 254 g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~-~~~A~~~~~~~ 312 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYMQ--VGGTTPTGEASREATRSMWDFFRMLLN-VMNR-PDLVELTYAQN 312 (327)
T ss_dssp TCHHHHHHHHHHHHHHH--TTSCC-----CCTHHHHHHHHHHHHHH-HTTC-HHHHHHHTTCC
T ss_pred ccHHHHHHHHHHHHHhC--CccccccccchhhcCHHHHHHHHHHHH-hcCC-HHHHHHHHHHH
Confidence 99999999999998754 55 334444555555 8888 99999887753
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.8e-18 Score=166.18 Aligned_cols=275 Identities=10% Similarity=-0.021 Sum_probs=212.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHH
Q 047305 386 CGMCRNGMVDDAQKLFNKMEKAGCFPSV--GMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKAS 463 (767)
Q Consensus 386 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (767)
......|++..|+..++...... |+. .....+..+|...|++++|+..++. ..+++...
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-----------------~~~~~~~a 67 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKP-----------------SSAPELQA 67 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-----------------TSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhcc-----------------cCChhHHH
Confidence 34456788888888887654432 332 3445667888888998888865532 13356677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 047305 464 LQTMVEQYCTAGLIHKAYKILMQLAESGNLP-DIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQ 542 (767)
Q Consensus 464 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 542 (767)
+..++..+...++.++|++.++++...+..| +...+..+..++...|++++|++.+++ ..+...+..++..+.
T Consensus 68 ~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~ 141 (291)
T 3mkr_A 68 VRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILL 141 (291)
T ss_dssp HHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHH
Confidence 7788888888899999999999988765434 566677778899999999999999987 346778888999999
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCHhh---HHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHH
Q 047305 543 RVDREEDAFRIFGQMPQNGCTPSPAV---YKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENA 619 (767)
Q Consensus 543 ~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 619 (767)
+.|++++|...++++.+.. |+... ...++..+...|++++|..+|+++++..|+++.+++.++.++.+.|++++|
T Consensus 142 ~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA 219 (291)
T 3mkr_A 142 KLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAA 219 (291)
T ss_dssp HTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999998753 44321 123345555669999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHH-HHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHH
Q 047305 620 IQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKE-ALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVF 693 (767)
Q Consensus 620 ~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 693 (767)
...+.+... .+|+++.++..++.++...|+.++ |.++++++++.+ |.++.+. +...+.+.++++..-|
T Consensus 220 ~~~l~~al~-~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~-P~~~~~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 220 EGVLQEALD-KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH-RSHPFIK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-CCChHHH----HHHHHHHHHHHHHHHc
Confidence 999998322 359999999999999999999976 568999999887 6666554 3456666666665544
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-18 Score=173.99 Aligned_cols=266 Identities=10% Similarity=-0.078 Sum_probs=225.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 047305 414 GMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNL 493 (767)
Q Consensus 414 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 493 (767)
..+..+...+...|++++|..+|+++.. ..+.+...+..++..+...|++++|...++++.+.. +
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~ 86 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQ--------------AAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-P 86 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHH--------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH--------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-c
Confidence 4566778889999999999999999852 234467788889999999999999999999998874 3
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH--------------HH-HHHhcCCHHHHHHHHHHhh
Q 047305 494 PDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTL--------------IN-GLQRVDREEDAFRIFGQMP 558 (767)
Q Consensus 494 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l--------------~~-~~~~~~~~~~A~~~~~~~~ 558 (767)
.+...+..+..++...|++++|+..++++...... +...+..+ .. .+...|++++|..+++++.
T Consensus 87 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 165 (327)
T 3cv0_A 87 KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAAL 165 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHH
Confidence 36788899999999999999999999999987422 22333333 22 3778899999999999998
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccch
Q 047305 559 QNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPY 638 (767)
Q Consensus 559 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~ 638 (767)
+.. +.+..++..++.++...|++++|...++++++..|.++.++..++.++...|++++|+..+.+... ..|.++.++
T Consensus 166 ~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~ 243 (327)
T 3cv0_A 166 EMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALD-INPGYVRVM 243 (327)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHH
T ss_pred hhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCHHHH
Confidence 864 457888999999999999999999999999999999999999999999999999999999988432 358888889
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHcCCCC------------ChHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 639 TIWLIGLCQDGQVKEALNIFSVLVECKAIV------------TPPSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 639 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
..++.+|...|++++|+..++++++.. |. ++.++..++.++...|++++|..+++++++
T Consensus 244 ~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 244 YNMAVSYSNMSQYDLAAKQLVRAIYMQ-VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH-TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999999999999999999998876 44 578999999999999999999999886543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-17 Score=175.84 Aligned_cols=382 Identities=10% Similarity=-0.069 Sum_probs=181.5
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-
Q 047305 273 LGSYSCLIDGLFRAKRYDEAYAWYRKMFEE--------KIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRER-----G- 338 (767)
Q Consensus 273 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~- 338 (767)
...|+.|...+...|++++|++.|++.++. .......+|+.+...|...|++++|...+++..+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 445667777777777777777777665432 01113456666777777777777777766665432 0
Q ss_pred CCC-CHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHcCCCCC
Q 047305 339 IVP-DTYCYNALIKGFCD--LGLLDQARSLQVEIWKRDSLPNTHTFTILICG---MCRNGMVDDAQKLFNKMEKAGCFPS 412 (767)
Q Consensus 339 ~~~-~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~~~ 412 (767)
..+ ...++.....++.. .+++++|...|+.+++..+ .+...+..+... +...++.++|+..+++..+.+.. +
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-N 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-C
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-c
Confidence 011 23344444433333 2346666666666665543 233333333333 23345555566666655554322 3
Q ss_pred HHHHHHHHHHHHHc----CCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047305 413 VGMFNALIDGLCKA----GELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLA 488 (767)
Q Consensus 413 ~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 488 (767)
..++..+...+... +++++|...+++.. ...+....++..++..+...|++++|...++++.
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al--------------~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 274 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEAL--------------EKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKAL 274 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHH--------------HHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--------------HhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 44444444444332 33444444444442 1223333444444444444444444444444444
Q ss_pred HcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhh
Q 047305 489 ESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAV 568 (767)
Q Consensus 489 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 568 (767)
+..+ .+..++..+..+|...+.... ... ...........+.++.|...++++.+.. +.+...
T Consensus 275 ~~~p-~~~~~~~~lg~~y~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 336 (472)
T 4g1t_A 275 EYIP-NNAYLHCQIGCCYRAKVFQVM---------NLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRV 336 (472)
T ss_dssp HHST-TCHHHHHHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCC
T ss_pred HhCC-ChHHHHHHHHHHHHHHHHHhh---------hHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchhhh
Confidence 3321 123333333333321110000 000 0000000111223456666666666543 334556
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhccCCCccc---hHHHHHH-HHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHH
Q 047305 569 YKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDE---SMKSIEE-FLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIG 644 (767)
Q Consensus 569 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~---~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~ 644 (767)
+..++.+|...|++++|++.|+++++..|++... +..++.. +...|++++|+..+.+.. ...|.+..
T Consensus 337 ~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal-~i~~~~~~-------- 407 (472)
T 4g1t_A 337 CSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV-KINQKSRE-------- 407 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH-HSCCCCHH--------
T ss_pred hhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcCcccHH--------
Confidence 6667777777777777777777777666554432 2333332 345677777777766621 12344422
Q ss_pred HhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047305 645 LCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 645 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 700 (767)
..+....+..++++.++.+ |.++.++..+|.+|...|++++|++.|+++++.+
T Consensus 408 --~~~~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 408 --KEKMKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp --HHHHHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred --HHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 1122344555666666665 6777778888888888888888888888887644
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.77 E-value=2e-17 Score=154.56 Aligned_cols=196 Identities=15% Similarity=0.030 Sum_probs=96.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHH
Q 047305 530 DSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEE 609 (767)
Q Consensus 530 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 609 (767)
+...+..+...+...|++++|+..|+++++.. +.+...+..++.++.+.|++++|+..|+++++..|.++.++..++.+
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEA 82 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 33444555555555555555555555555432 33444555555555555555555555555555555555555555555
Q ss_pred HHhc-----------CCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 047305 610 FLQK-----------GEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIH 678 (767)
Q Consensus 610 ~~~~-----------g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 678 (767)
+... |++++|+..+.+... ..|+++.++..++.+|...|++++|+..|+++++.+ .++.++..++.
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~-~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAER-VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 5555 555555555555211 235555555555555555555555555555555554 45555555555
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHH
Q 047305 679 GLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCR 732 (767)
Q Consensus 679 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~ 732 (767)
+|...|++++|+..|+++++.. |+.......+..++...|+ +++|...+++
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g~-~~~A~~~~~~ 210 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQA--PKDLDLRVRYASALLLKGK-AEEAARAAAL 210 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccC-HHHHHHHHHH
Confidence 5555555555555555555432 4433333333333324554 5555555544
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.9e-17 Score=162.89 Aligned_cols=307 Identities=9% Similarity=0.070 Sum_probs=151.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047305 320 EAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQK 399 (767)
Q Consensus 320 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 399 (767)
+.|++++|.++++++. ++.+|..++.++.+.|++++|.+.|... +|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 5678999999999882 3458999999999999999999999653 577789999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHH
Q 047305 400 LFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHK 479 (767)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 479 (767)
+++..++. .+++.+.+.++.+|.+.|+++++.++++. ++...+..++..|...|.+++
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~--------------------pn~~a~~~IGd~~~~~g~yee 140 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFING--------------------PNNAHIQQVGDRCYDEKMYDA 140 (449)
T ss_dssp ----------------------------CHHHHTTTTTC--------------------C----------------CTTT
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC--------------------CcHHHHHHHHHHHHHcCCHHH
Confidence 88887764 35678889999999999999998876631 344589999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 047305 480 AYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQ 559 (767)
Q Consensus 480 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 559 (767)
|...|.++ ..|..++.++.+.|++++|++.+.++ .+..+|..++.+|...|+++.|......+
T Consensus 141 A~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-- 203 (449)
T 1b89_A 141 AKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-- 203 (449)
T ss_dssp HHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT--
T ss_pred HHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH--
Confidence 99999976 37899999999999999999999998 27889999999999999999996655543
Q ss_pred CCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHh--cCCHHHHHHHHHH-hhhcCCC----
Q 047305 560 NGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQ--KGEVENAIQGLLE-MDFKLND---- 632 (767)
Q Consensus 560 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~~A~~~~~~-~~~~~~p---- 632 (767)
...+.....++..|.+.|++++|+.+++..+...+.....+..++.+|.+ -++..+.++.+.. +. ..|
T Consensus 204 ---~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~in--i~k~~~~ 278 (449)
T 1b89_A 204 ---VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRA 278 (449)
T ss_dssp ---TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSC--HHHHHHH
T ss_pred ---HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhc--CcHHHHH
Confidence 23444466788999999999999999999999998888888888888876 4556666666554 22 235
Q ss_pred -CCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChh
Q 047305 633 -FQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLD 687 (767)
Q Consensus 633 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 687 (767)
.++..|..++..|.+.++++.|.. .|.+. +++..--..+-++..+-.+.+
T Consensus 279 ~~~~~~w~e~~~ly~~~~e~d~A~~---tm~~h--~~~a~~~~~f~~~~~kv~n~e 329 (449)
T 1b89_A 279 AEQAHLWAELVFLYDKYEEYDNAII---TMMNH--PTDAWKEGQFKDIITKVANVE 329 (449)
T ss_dssp HHTTTCHHHHHHHHHHTTCHHHHHH---HHHHS--TTTTCCHHHHHHHHHHCSSTH
T ss_pred HHHHHHHHHHHHHHHhhchHHHHHH---HHHhC--ChhhhhhHHHHHHHhchhHHH
Confidence 567789999999999999999987 44443 333223333444444444443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-17 Score=154.92 Aligned_cols=199 Identities=14% Similarity=-0.020 Sum_probs=154.5
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHH
Q 047305 494 PDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLM 573 (767)
Q Consensus 494 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 573 (767)
++...+..+...+...|++++|+..|++..+.... +...+..+..++...|++++|+..++++++.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45566777777788888888888888888766322 45677777788888888888888888887753 44566777777
Q ss_pred HHHHhc-----------CChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHH
Q 047305 574 TWSCRR-----------RKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWL 642 (767)
Q Consensus 574 ~~~~~~-----------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~ 642 (767)
.++.+. |++++|+..|+++++..|.++.++..++.++...|++++|+..+.+.... . +++.++..++
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~-~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALAL-E-DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-c-cchHHHHHHH
Confidence 888888 99999999999999999999999999999999999999999999994332 2 6778899999
Q ss_pred HHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047305 643 IGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTL 697 (767)
Q Consensus 643 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 697 (767)
.+|...|++++|+..|+++++.+ |.++.++..++.++...|++++|+..++++-
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999987 8889999999999999999999999998763
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.7e-17 Score=157.52 Aligned_cols=227 Identities=11% Similarity=0.046 Sum_probs=199.4
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC----hhh
Q 047305 460 DKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLR--PD----SVT 533 (767)
Q Consensus 460 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~----~~~ 533 (767)
....+..++..+...|++++|...|+++.+.. .+...|..+..++...|++++|+..++++...... |+ ..+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 34577788999999999999999999998886 67888999999999999999999999999875321 12 467
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhc
Q 047305 534 YGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQK 613 (767)
Q Consensus 534 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 613 (767)
+..+..++...|++++|...++++.+. .|+. ..+.+.|++++|...++++++..|.++.++..++.++...
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHh
Confidence 888999999999999999999999874 3443 3466778899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHH
Q 047305 614 GEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVF 693 (767)
Q Consensus 614 g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 693 (767)
|++++|+..+.+... ..|.++.++..++.+|...|++++|+..++++++.+ |.++.++..++.+|...|++++|...|
T Consensus 153 ~~~~~A~~~~~~a~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIK-RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999998432 358888889999999999999999999999999987 788999999999999999999999999
Q ss_pred HHHHHC
Q 047305 694 LYTLKN 699 (767)
Q Consensus 694 ~~~~~~ 699 (767)
+++++.
T Consensus 231 ~~a~~~ 236 (258)
T 3uq3_A 231 DAARTK 236 (258)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 999874
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-16 Score=160.57 Aligned_cols=251 Identities=10% Similarity=0.017 Sum_probs=210.4
Q ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCChhhHHH
Q 047305 458 VHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGN-INGALKLFKELQLKGLRPDSVTYGT 536 (767)
Q Consensus 458 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~ 536 (767)
+.+..++..+...+...|++++|+..++++++..+ .+...|+.+..++...|+ +++|+..|++++..... +...|..
T Consensus 94 p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~ 171 (382)
T 2h6f_A 94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHH 171 (382)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred hhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHH
Confidence 34567888899999999999999999999998753 367889999999999997 99999999999987543 6678999
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHh-cCC
Q 047305 537 LINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQ-KGE 615 (767)
Q Consensus 537 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-~g~ 615 (767)
+..++...|++++|+..|+++++.+ +.+...|..+..++.+.|++++|+..|+++++.+|.+..+++.++.++.. .|.
T Consensus 172 ~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 172 RRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc
Confidence 9999999999999999999999864 55788899999999999999999999999999999999999999999999 666
Q ss_pred HHHHH-----HHHHHhhhcCCCCCccchHHHHHHHhhcC--CHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC----
Q 047305 616 VENAI-----QGLLEMDFKLNDFQLAPYTIWLIGLCQDG--QVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRG---- 684 (767)
Q Consensus 616 ~~~A~-----~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---- 684 (767)
.++|+ ..+.+.. ..+|++..+|+.++.+|...| ++++|++.++++ +.+ +.++.++..++++|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al-~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMI-KLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp CSHHHHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccc
Confidence 57773 5566522 246999999999999999988 699999999998 665 778899999999999874
Q ss_pred -----ChhHHHHHHHHH-HHCCCCCCHH-HHHHHHHHHh
Q 047305 685 -----YLDLAMDVFLYT-LKNGFILRPR-VCNYLLRSLL 716 (767)
Q Consensus 685 -----~~~~A~~~~~~~-~~~~~~~~~~-~~~~l~~~l~ 716 (767)
.+++|+.+|+++ ++. .|... .|.++...+.
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEK--DTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHHH
Confidence 358999999998 653 36543 3444444443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.6e-16 Score=153.59 Aligned_cols=246 Identities=11% Similarity=-0.011 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHH
Q 047305 462 ASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPD--SVTYGTLIN 539 (767)
Q Consensus 462 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~ 539 (767)
..+...+..+...|++++|...|+++.+..+ .+...+..+..+|...|++++|+..++++......|+ ...+..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 3445566677777777777777777776632 2445667777777777777777777777776321111 123667777
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHH
Q 047305 540 GLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENA 619 (767)
Q Consensus 540 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 619 (767)
.+...|++++|+..++++.+.. +.+..++..++.+|...|++++|+..|+++++..|.++.++..++......+++++|
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777643 334566777777777777777777777777777777777777777333344577777
Q ss_pred HHHHHHhhhcCCCCCccchHHHHHHHhhcCC---HHHHHHHHHHHHHcCC-CCC------hHhHHHHHHHHHhcCChhHH
Q 047305 620 IQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQ---VKEALNIFSVLVECKA-IVT------PPSCVKLIHGLCKRGYLDLA 689 (767)
Q Consensus 620 ~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~------~~~~~~l~~~~~~~g~~~~A 689 (767)
++.+.+... ..|.++..+..++.++...|+ +++|+..++++++... .|+ ..++..++.+|...|++++|
T Consensus 162 ~~~~~~a~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLE-LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHH-HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHH-hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 777776322 246666667777777777776 7777777777754320 122 14566677777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHH
Q 047305 690 MDVFLYTLKNGFILRPRVCNYLL 712 (767)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~l~ 712 (767)
..+|+++++.. |+.......+
T Consensus 241 ~~~~~~al~~~--p~~~~a~~~l 261 (272)
T 3u4t_A 241 DAAWKNILALD--PTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHH
T ss_pred HHHHHHHHhcC--ccHHHHHHHh
Confidence 77777777643 6655444433
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.73 E-value=3.4e-16 Score=158.12 Aligned_cols=251 Identities=8% Similarity=0.015 Sum_probs=217.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcC
Q 047305 413 VGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGL-IHKAYKILMQLAESG 491 (767)
Q Consensus 413 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~ 491 (767)
...|..+...+...|++++|+..++++. ...+.+..++..+..++...|+ +++|+..|+++++..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al--------------~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~ 162 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAI--------------ELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ 162 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHH--------------HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHH--------------HhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC
Confidence 4567888888999999999999999986 2345677899999999999997 999999999999885
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHH
Q 047305 492 NLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKS 571 (767)
Q Consensus 492 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 571 (767)
+. +...|..+..++...|++++|+..|++++..... +...|..+..++...|++++|+..++++++.+ +.+...|..
T Consensus 163 P~-~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~ 239 (382)
T 2h6f_A 163 PK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQ 239 (382)
T ss_dssp TT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 43 7889999999999999999999999999988543 67789999999999999999999999999864 456788999
Q ss_pred HHHHHHh-cCChhHH-----HHHHHHHHhccCCCccchHHHHHHHHhcC--CHHHHHHHHHHhhhcCCCCCccchHHHHH
Q 047305 572 LMTWSCR-RRKFSLA-----FSLWLQYLRDISGRDDESMKSIEEFLQKG--EVENAIQGLLEMDFKLNDFQLAPYTIWLI 643 (767)
Q Consensus 572 l~~~~~~-~g~~~~A-----~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~p~~~~~~~~l~~ 643 (767)
+..++.+ .|..++| ++.|+++++..|.+..+++.++.++...| ++++|++.+.++ ...|+++.++..++.
T Consensus 240 lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~--~~~p~~~~al~~La~ 317 (382)
T 2h6f_A 240 RYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL--QPSHSSPYLIAFLVD 317 (382)
T ss_dssp HHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH--TTTCCCHHHHHHHHH
T ss_pred HHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh--ccCCCCHHHHHHHHH
Confidence 9999988 5665888 59999999999999999999999999988 689999988887 567999999999999
Q ss_pred HHhhcC---------CHHHHHHHHHHH-HHcCCCCChHhHHHHHHHHHhc
Q 047305 644 GLCQDG---------QVKEALNIFSVL-VECKAIVTPPSCVKLIHGLCKR 683 (767)
Q Consensus 644 ~~~~~g---------~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~ 683 (767)
+|.+.| .+++|+++|+++ .+.+ |.....|..++..+...
T Consensus 318 ~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 318 IYEDMLENQCDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHHHH
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHH
Confidence 999874 369999999999 8887 77777888777766543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=9.9e-16 Score=148.11 Aligned_cols=225 Identities=8% Similarity=0.000 Sum_probs=193.7
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC--CCC----HhhH
Q 047305 496 IITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGC--TPS----PAVY 569 (767)
Q Consensus 496 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~----~~~~ 569 (767)
...|..+...+...|++++|+..++++.... .+...+..+..++...|++++|...++++.+... .++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4567888899999999999999999999887 6888999999999999999999999999987421 112 5788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcC
Q 047305 570 KSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDG 649 (767)
Q Consensus 570 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 649 (767)
..++.++...|++++|...|+++++..|. +..+...|++++|+..+.+... ..|.++.++..++.++...|
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAY-VNPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHH-cCcchHHHHHHHHHHHHHhc
Confidence 89999999999999999999999998776 4667888999999998888532 35888888999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhcCCccHHHHHH
Q 047305 650 QVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPR-VCNYLLRSLLFSKDNKKVHAYH 728 (767)
Q Consensus 650 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~a~~ 728 (767)
++++|+..++++++.. |.++.++..++.+|...|++++|+..++++++.. |+.. .+..+...+. ..|+ +++|..
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~-~~g~-~~~A~~ 228 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATAQI-AVKE-YASALE 228 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH-HTTC-HHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHH-HHhh-HHHHHH
Confidence 9999999999999987 7889999999999999999999999999999865 6644 4444555555 8888 999999
Q ss_pred HHHHHHHc
Q 047305 729 LLCRMKSV 736 (767)
Q Consensus 729 ~~~~~~~~ 736 (767)
.+++..+.
T Consensus 229 ~~~~a~~~ 236 (258)
T 3uq3_A 229 TLDAARTK 236 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998754
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.71 E-value=2e-15 Score=147.23 Aligned_cols=242 Identities=13% Similarity=-0.023 Sum_probs=198.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC--HhhHHHHHH
Q 047305 497 ITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPS--PAVYKSLMT 574 (767)
Q Consensus 497 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~ 574 (767)
..+......+...|++++|+..++++.+.... +...+..+..++...|++++|+..++++.+....++ ...+..++.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 44566778889999999999999999987432 455888999999999999999999999988431221 334888999
Q ss_pred HHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHH
Q 047305 575 WSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEA 654 (767)
Q Consensus 575 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 654 (767)
++...|++++|+..|+++++..|.++.++..++.+|...|++++|+..+.+... ..|.++.++..++..+...+++++|
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR-PTTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC-SSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhh-cCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999988432 3688999999999555556699999
Q ss_pred HHHHHHHHHcCCCCChHhHHHHHHHHHhcCC---hhHHHHHHHHHHHCC-CCCCH------HHHHHHHHHHhhcCCccHH
Q 047305 655 LNIFSVLVECKAIVTPPSCVKLIHGLCKRGY---LDLAMDVFLYTLKNG-FILRP------RVCNYLLRSLLFSKDNKKV 724 (767)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~~------~~~~~l~~~l~~~~~~~~~ 724 (767)
+..++++++.. |.++..+..++.++...|+ +++|...|+++++.. -.|++ ..+..+...+. ..|+ ++
T Consensus 162 ~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~-~~ 238 (272)
T 3u4t_A 162 DSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYT-INRD-KV 238 (272)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHH-HTTC-HH
T ss_pred HHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH-HcCC-HH
Confidence 99999999987 7778999999999999999 899999999998742 11332 23333444444 7888 99
Q ss_pred HHHHHHHHHHHcCCCCCCcch
Q 047305 725 HAYHLLCRMKSVGYDLDACLY 745 (767)
Q Consensus 725 ~a~~~~~~~~~~~~~~~~~~~ 745 (767)
+|...+++..+. .|+....
T Consensus 239 ~A~~~~~~al~~--~p~~~~a 257 (272)
T 3u4t_A 239 KADAAWKNILAL--DPTNKKA 257 (272)
T ss_dssp HHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHHHHHHHhc--CccHHHH
Confidence 999999999876 4665543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=5.1e-16 Score=148.63 Aligned_cols=214 Identities=13% Similarity=0.073 Sum_probs=159.8
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHH
Q 047305 495 DIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMT 574 (767)
Q Consensus 495 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 574 (767)
....|..+...+...|++++|+..|+++..... .+...+..+...+...|++++|+..++++.+.. +.+..++..++.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 445667777778888888888888888887532 256677788888888888999998888887753 446778888888
Q ss_pred HHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHH
Q 047305 575 WSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEA 654 (767)
Q Consensus 575 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 654 (767)
++...|++++|.+.|+++++..|.++.++..++..+...|++++|+..+.+... ..|.++..+..++.+|...|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVE-LNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH-hCCccHHHHHHHHHHHHHcCCHHHH
Confidence 888999999999999999998898888888899999999999999888888432 2477788899999999999999999
Q ss_pred HHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047305 655 LNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRS 714 (767)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 714 (767)
+..++++.+.. +.++.++..++.+|...|++++|...++++++.. |+.......+..
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~ 235 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ--PDHMLALHAKKL 235 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC--TTCHHHHHHHTC
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC--cchHHHHHHHHH
Confidence 99999998886 7778899999999999999999999999998754 666554444433
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.1e-14 Score=139.96 Aligned_cols=225 Identities=13% Similarity=-0.022 Sum_probs=189.7
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhH
Q 047305 459 HDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCK----VGNINGALKLFKELQLKGLRPDSVTY 534 (767)
Q Consensus 459 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~ 534 (767)
.++..+..+...+...|++++|...|++..+. .+...+..+...|.. .+++++|+..|++..+.+ +...+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 35667778888899999999999999998873 356778888888888 999999999999998875 67788
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHhccCCCccchHHH
Q 047305 535 GTLINGLQR----VDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCR----RRKFSLAFSLWLQYLRDISGRDDESMKS 606 (767)
Q Consensus 535 ~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l 606 (767)
..+...|.. .+++++|+..|+++.+.+ +...+..+..+|.. .+++++|+..|+++++.. ++.++..+
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~l 152 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHH
Confidence 888888988 999999999999998864 67788888888888 899999999999999865 56778888
Q ss_pred HHHHHh----cCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhh----cCCHHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 047305 607 IEEFLQ----KGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQ----DGQVKEALNIFSVLVECKAIVTPPSCVKLIH 678 (767)
Q Consensus 607 ~~~~~~----~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 678 (767)
+..|.. .+++++|+..+.+.... .++.++..++.+|.. .+++++|+..|+++.+.+ + +.++..++.
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~--~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDL---KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-N--GGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-C--HHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-C--HHHHHHHHH
Confidence 888888 89999999888884322 345668899999999 899999999999998875 2 678888999
Q ss_pred HHHh----cCChhHHHHHHHHHHHCC
Q 047305 679 GLCK----RGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 679 ~~~~----~g~~~~A~~~~~~~~~~~ 700 (767)
+|.. .+++++|...|+++++.+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 9998 899999999999998865
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.9e-15 Score=156.69 Aligned_cols=218 Identities=11% Similarity=0.014 Sum_probs=139.8
Q ss_pred hHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc----CCHHHHHHHHHHhhhCCCCCCHhhHH
Q 047305 498 TYNSLINGFCKVG---NINGALKLFKELQLKGLRPDSVTYGTLINGLQRV----DREEDAFRIFGQMPQNGCTPSPAVYK 570 (767)
Q Consensus 498 ~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~ 570 (767)
.+..+...|...| +.++|+..|+...+.| .++...+..+...|... +++++|+..|++.. +.++..+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa----~g~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA----PGYPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG----GGSTHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc----CCCHHHHH
Confidence 5566666666667 6777777777777665 23444445555555443 57777777777766 23444555
Q ss_pred HHHHH-H--HhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcC-----CHHHHHHHHHHhhhcCCCCCccchHHHH
Q 047305 571 SLMTW-S--CRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKG-----EVENAIQGLLEMDFKLNDFQLAPYTIWL 642 (767)
Q Consensus 571 ~l~~~-~--~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~p~~~~~~~~l~ 642 (767)
.+..+ + ...+++++|...|+++.+. .++.+.+.++..|. .| ++++|++.+.+.. |.++.++..|+
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg 325 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAADYYLG 325 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHH
Confidence 55555 3 4567777787777777754 36677777777776 44 7778877777654 55666788888
Q ss_pred HHHhh----cCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047305 643 IGLCQ----DGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCK----RGYLDLAMDVFLYTLKNGFILRPRVCNYLLRS 714 (767)
Q Consensus 643 ~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 714 (767)
.+|.. ..++++|+.+|+++.+.| ++.+...|+.+|.. ..+.++|...|+++.+.| ++. ....+..
T Consensus 326 ~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g---~~~-a~~~l~~ 398 (452)
T 3e4b_A 326 QIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD---TPE-ANDLATQ 398 (452)
T ss_dssp HHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC---CHH-HHHHHHH
T ss_pred HHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC---CHH-HHHHHHH
Confidence 77776 348888888888887765 34566777877774 457888888888887765 222 2222222
Q ss_pred Hhh--cCCccHHHHHHHHHHHHH
Q 047305 715 LLF--SKDNKKVHAYHLLCRMKS 735 (767)
Q Consensus 715 l~~--~~~~~~~~a~~~~~~~~~ 735 (767)
+.. ..++ ..+|..+.++-+.
T Consensus 399 l~~~~~~~~-~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 399 LEAPLTPAQ-RAEGQRLVQQELA 420 (452)
T ss_dssp HHTTCCHHH-HHHHHHHHHHHHH
T ss_pred HHHhCCHHH-HHHHHHHHHHHHH
Confidence 221 2223 6677777776553
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.69 E-value=3.3e-15 Score=143.85 Aligned_cols=206 Identities=13% Similarity=-0.061 Sum_probs=137.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHH
Q 047305 497 ITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWS 576 (767)
Q Consensus 497 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 576 (767)
..|..+...+...|++++|+..++++.... +.+...+..+...+...|++++|...++++.+.. +.+...+..++.+|
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 445556666666666666776666666553 1244556666666666777777777776666542 33455666666667
Q ss_pred HhcCChhHHHHHHHHHHh--ccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHH
Q 047305 577 CRRRKFSLAFSLWLQYLR--DISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEA 654 (767)
Q Consensus 577 ~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 654 (767)
...|++++|.+.|+++++ ..|.+..++..++.++...|++++|+..+.+... ..|.++.++..++.+|...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR-LNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777766 5555666666677777777777777766666322 2366666677777777777888888
Q ss_pred HHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 047305 655 LNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVC 708 (767)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 708 (767)
+..++++.+.. +.++..+..++.++...|++++|..+++++++.. |+....
T Consensus 195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~ 245 (252)
T 2ho1_A 195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY--PGSLEY 245 (252)
T ss_dssp HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSHHH
T ss_pred HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCCHHH
Confidence 88888777765 6667777777777777888888888888777644 554443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-15 Score=159.99 Aligned_cols=352 Identities=14% Similarity=0.021 Sum_probs=219.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047305 314 MIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLL---DQARSLQVEIWKRDSLPNTHTFTILICGMCR 390 (767)
Q Consensus 314 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 390 (767)
+...+.+.|++++|.+.|++..+.| +...+..+...|...|+. ++|...++...+. +...+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4455566666666666666665554 222333444444555555 5666666555533 22334444443333
Q ss_pred cC-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHH
Q 047305 391 NG-----MVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQ 465 (767)
Q Consensus 391 ~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (767)
.| ++++|...|++..+.|.. ..+..+...|...+..+++
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~--------------------------------- 125 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPN--------------------------------- 125 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTT---------------------------------
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCC---------------------------------
Confidence 33 455566666555554322 1334444444433322111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 047305 466 TMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVD 545 (767)
Q Consensus 466 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 545 (767)
.++.+.+......+ +...+..+...|...+.++++......+.+.-...+...+..+...|...|
T Consensus 126 ------------~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g 190 (452)
T 3e4b_A 126 ------------VNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQ 190 (452)
T ss_dssp ------------CCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTT
T ss_pred ------------HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 12344444444443 345666777778877755555444333332222234447888889999999
Q ss_pred ---CHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhc----CChhHHHHHHHHHHhccCCCccchHHHHHH-H--HhcCC
Q 047305 546 ---REEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRR----RKFSLAFSLWLQYLRDISGRDDESMKSIEE-F--LQKGE 615 (767)
Q Consensus 546 ---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~--~~~g~ 615 (767)
+.++|+..|++..+.| +++...+..+..+|... +++++|...|+++. |.++.++..++.. + ...|+
T Consensus 191 ~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d 266 (452)
T 3e4b_A 191 QPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGD 266 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCC
T ss_pred CcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCC
Confidence 9999999999999877 56666656777777655 79999999999988 8999999999998 4 56899
Q ss_pred HHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcC-----CHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh----cCCh
Q 047305 616 VENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDG-----QVKEALNIFSVLVECKAIVTPPSCVKLIHGLCK----RGYL 686 (767)
Q Consensus 616 ~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~ 686 (767)
+++|+..+.+... +.++.++..|+.+|. .| ++++|+.+|+++. +.++.+...|+.+|.. ..++
T Consensus 267 ~~~A~~~~~~Aa~---~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~ 338 (452)
T 3e4b_A 267 VEQMMKYLDNGRA---ADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYP 338 (452)
T ss_dssp HHHHHHHHHHHHH---TTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCH
T ss_pred HHHHHHHHHHHHH---CCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCH
Confidence 9999999998542 456778999999998 55 9999999999998 4567889999988887 4499
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCC--ccHHHHHHHHHHHHHcCC
Q 047305 687 DLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKD--NKKVHAYHLLCRMKSVGY 738 (767)
Q Consensus 687 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~a~~~~~~~~~~~~ 738 (767)
++|...|+++.+.| ++.....+...+....| .+..+|..++++..+.|.
T Consensus 339 ~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 339 QKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 99999999998765 33344445444442222 238899999999888775
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.68 E-value=5e-15 Score=139.70 Aligned_cols=200 Identities=10% Similarity=-0.059 Sum_probs=107.8
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHH
Q 047305 495 DIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMT 574 (767)
Q Consensus 495 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 574 (767)
+...+..++..+...|++++|+..++++..... .+...+..+...+...|++++|...++++.+.. +.+..++..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 344555555666666666666666666655421 134455555555566666666666666655432 234445555555
Q ss_pred HHHhc-CChhHHHHHHHHHHh--ccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCH
Q 047305 575 WSCRR-RKFSLAFSLWLQYLR--DISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQV 651 (767)
Q Consensus 575 ~~~~~-g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 651 (767)
++... |++++|...++++++ ..|.+..++..++.++...|++++|+..+.+... ..|.++..+..++.+|...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA-AQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCchHHHHHHHHHHHcCCH
Confidence 55556 666666666666555 3333344455555555555555555555555221 1344455555555555555555
Q ss_pred HHHHHHHHHHHHcCCC-CChHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 652 KEALNIFSVLVECKAI-VTPPSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 652 ~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
++|+..++++++.. | .++..+..++.++...|+.++|..+++.+.+
T Consensus 164 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 55555555555543 3 4445555555555555555555555555543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.68 E-value=8.7e-15 Score=138.04 Aligned_cols=199 Identities=11% Similarity=-0.099 Sum_probs=111.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHH
Q 047305 532 VTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFL 611 (767)
Q Consensus 532 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 611 (767)
..+..++..+...|++++|...++++.+.. +.+...+..++.++...|++++|.+.|+++++..|.+..++..++.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 345555555666666666666666655532 3345555555566666666666666666666666666666666666666
Q ss_pred hc-CCHHHHHHHHHHhhh-cCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHH
Q 047305 612 QK-GEVENAIQGLLEMDF-KLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLA 689 (767)
Q Consensus 612 ~~-g~~~~A~~~~~~~~~-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 689 (767)
.. |++++|+..+.+... ...|.+..++..++.++...|++++|+..++++.+.. |.++.++..++.++...|++++|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHH
Confidence 66 666666665555321 1223344555666666666666666666666665554 44555666666666666666666
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHhhcCCccHHHHHHHHHHHHH
Q 047305 690 MDVFLYTLKNGFIL-RPRVCNYLLRSLLFSKDNKKVHAYHLLCRMKS 735 (767)
Q Consensus 690 ~~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~ 735 (767)
...++++++.. | +......++..+....|+ .++|..+++.+..
T Consensus 167 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 167 DYYFKKYQSRV--EVLQADDLLLGWKIAKALGN-AQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHHH
Confidence 66666665533 3 333333333333334554 5666666655543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.9e-16 Score=168.28 Aligned_cols=152 Identities=14% Similarity=0.140 Sum_probs=114.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChhhHH
Q 047305 131 PDVYIYNAVLNIAFRKQLFLLALAVYYEMVK---LNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYT 207 (767)
Q Consensus 131 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 207 (767)
-...+|++||++|++.|++++|.++|.+|.+ .|+.||+.+||+||.+||+.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3445788888888888888888888877754 4678888888888888888888888888888888888888888888
Q ss_pred HHHHHHHccCC-HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------cccHHHHH
Q 047305 208 IVISGLCQINR-ADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPR------LGSYSCLI 280 (767)
Q Consensus 208 ~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~li 280 (767)
++|.++++.|+ .++|.++|++|.+.|+.||..+|++++..+.+. ..++.++++ ..++.|+ ..+...|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 88888888887 467888888888888888888888887665443 333333333 2233333 44555666
Q ss_pred HHHHhcC
Q 047305 281 DGLFRAK 287 (767)
Q Consensus 281 ~~~~~~~ 287 (767)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 6666655
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.67 E-value=4.6e-15 Score=134.81 Aligned_cols=167 Identities=12% Similarity=0.012 Sum_probs=140.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHH
Q 047305 530 DSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEE 609 (767)
Q Consensus 530 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 609 (767)
+...|..+..++...|++++|+..|+++++.. +.+...+..++.+|.+.|++++|...+.+++...|.++.++..++..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 55678888888888888888888888888753 44677888888888888888999888888888888888888888888
Q ss_pred HHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHH
Q 047305 610 FLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLA 689 (767)
Q Consensus 610 ~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 689 (767)
+...++++.|...+.+... ..|.++.++..++.+|...|++++|++.|+++++.+ |.++.++..++.+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIA-LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH-hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 8888888888888777432 358888888999999999999999999999998887 78888899999999999999999
Q ss_pred HHHHHHHHHC
Q 047305 690 MDVFLYTLKN 699 (767)
Q Consensus 690 ~~~~~~~~~~ 699 (767)
+..|+++++.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 9999999874
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.66 E-value=8.4e-15 Score=140.96 Aligned_cols=210 Identities=15% Similarity=-0.013 Sum_probs=179.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHH
Q 047305 531 SVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEF 610 (767)
Q Consensus 531 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 610 (767)
...+..+...+...|++++|...++++.+.. +.+...+..++.+|...|++++|.+.|+++++..|.+..++..++..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 3567788889999999999999999998763 456788899999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHhhh-cCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHH
Q 047305 611 LQKGEVENAIQGLLEMDF-KLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLA 689 (767)
Q Consensus 611 ~~~g~~~~A~~~~~~~~~-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 689 (767)
...|++++|++.+.+... ...|.++.++..++.+|...|++++|+..++++.+.. +.++.++..++.+|...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999998533 2357777889999999999999999999999999987 77889999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCCCCCcchhh
Q 047305 690 MDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCRMKSVGYDLDACLYPK 747 (767)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 747 (767)
...++++++.. |+.......+..++...|+ +++|...++++.+. .|+...+..
T Consensus 195 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~~~~~--~p~~~~~~~ 247 (252)
T 2ho1_A 195 RQYYDLFAQGG--GQNARSLLLGIRLAKVFED-RDTAASYGLQLKRL--YPGSLEYQE 247 (252)
T ss_dssp HHHHHHHHTTS--CCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTSHHHHH
T ss_pred HHHHHHHHHhC--cCcHHHHHHHHHHHHHccC-HHHHHHHHHHHHHH--CCCCHHHHH
Confidence 99999998743 6655544444444447888 99999999999875 465554433
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=3.9e-15 Score=145.51 Aligned_cols=219 Identities=12% Similarity=-0.101 Sum_probs=102.4
Q ss_pred CCHHHHHHHHHHHHHcCCC---CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 047305 475 GLIHKAYKILMQLAESGNL---PDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAF 551 (767)
Q Consensus 475 g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~ 551 (767)
|++++|+..++++.+.... .+...+..++.++...|++++|+..|+++..... .+..++..++.++...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHHHH
Confidence 3444444444444433111 1233444445555555555555555555554421 13444555555555555555555
Q ss_pred HHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 047305 552 RIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLN 631 (767)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 631 (767)
..++++++.. +.+..++..++.+|.+.|++++|...|+++++..|.++....... .+...|++++|+..+.+.... .
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~-~ 174 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY-LAEQKLDEKQAKEVLKQHFEK-S 174 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH-HHHHHHCHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHH-HHHHhcCHHHHHHHHHHHHhc-C
Confidence 5555555432 223444555555555555555555555555555555443332222 223345555555555442211 2
Q ss_pred CCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCC---CChHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 632 DFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAI---VTPPSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 632 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
|.+.. ...++..+...++.++|+..++++.+.... .++.++..++.+|...|++++|...|+++++
T Consensus 175 ~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 175 DKEQW-GWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp CCCST-HHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CcchH-HHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33333 223444455555555555555555443210 1134555555555555555555555555554
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.6e-15 Score=143.64 Aligned_cols=218 Identities=11% Similarity=0.033 Sum_probs=171.5
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 047305 459 HDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLI 538 (767)
Q Consensus 459 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 538 (767)
.....+..++..+...|++++|...|+++.+.. +.+...+..+..++...|++++|+..++++..... .+...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHH
Confidence 455677788889999999999999999998764 33678888999999999999999999999998742 3667888999
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHH
Q 047305 539 NGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVEN 618 (767)
Q Consensus 539 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 618 (767)
..+...|++++|...++++.+.. +.+...+..++.++.+.|++++|...++++++..|.++.++..++.++...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999998864 45778888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 047305 619 AIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLC 681 (767)
Q Consensus 619 A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 681 (767)
|+..+.+... ..|.++.++..++.+|...|++++|+..++++++.. |.++.++..++.+..
T Consensus 178 A~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 178 ALSQFAAVTE-QDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ-PDHMLALHAKKLLGH 238 (243)
T ss_dssp HHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC-TTCHHHHHHHTC---
T ss_pred HHHHHHHHHH-hCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-cchHHHHHHHHHHHh
Confidence 9999988432 358888889999999999999999999999999987 777777766654433
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.4e-16 Score=167.73 Aligned_cols=151 Identities=12% Similarity=0.123 Sum_probs=129.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHhh---hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 047305 97 VSDVFFVLISGYYKVGDCEKALESFGKMK---EFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSL 173 (767)
Q Consensus 97 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 173 (767)
.-.+|+++|.+|++.|+.++|.++|+.|. ..|+.||+.+||+||.+|++.|++++|.++|++|.+.|+.||..+||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 44789999999999999999999998876 458999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCh-HHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCC------HHHHHHHHH
Q 047305 174 LINGLSKSGKT-EVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPD------FVAYNALLN 246 (767)
Q Consensus 174 l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~ 246 (767)
+|.++|+.|+. +.|.++|++|.+.|+.||..+|++++....+ +.+++..+++ ..++.|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR----~~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR----ATVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH----HHHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH----HHHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 99999999985 7899999999999999999999999876544 3455555555 3345544 455666777
Q ss_pred HHHhcC
Q 047305 247 GFCKLR 252 (767)
Q Consensus 247 ~~~~~~ 252 (767)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 777655
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.63 E-value=8.9e-15 Score=154.05 Aligned_cols=213 Identities=9% Similarity=-0.102 Sum_probs=182.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 047305 477 IHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNI-NGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFG 555 (767)
Q Consensus 477 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~ 555 (767)
++++...+++..... +.+...+..+..++...|++ ++|+..|+++.+.... +...+..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 466667777665542 34677888889999999999 9999999999887422 46788999999999999999999999
Q ss_pred HhhhCCCCCCHhhHHHHHHHHHhc---------CChhHHHHHHHHHHhccCCCccchHHHHHHHHhc--------CCHHH
Q 047305 556 QMPQNGCTPSPAVYKSLMTWSCRR---------RKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQK--------GEVEN 618 (767)
Q Consensus 556 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--------g~~~~ 618 (767)
++++. .|+...+..+..+|... |++++|+..|+++++..|.++.++..++.+|... |++++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 99875 46678888899999998 9999999999999999999999999999999998 99999
Q ss_pred HHHHHHHhhhcCCC---CCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHH
Q 047305 619 AIQGLLEMDFKLND---FQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLY 695 (767)
Q Consensus 619 A~~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 695 (767)
|+..+.+... ..| .++.+|..++.+|...|++++|++.|+++++.+ |.++.++..++.++...|++++|++.+++
T Consensus 240 A~~~~~~al~-~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 240 ALSAYAQAEK-VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHH-HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHH-hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999988432 257 888889999999999999999999999999987 78888999999999999999999886644
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.7e-13 Score=132.08 Aligned_cols=224 Identities=10% Similarity=-0.039 Sum_probs=196.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 047305 412 SVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCT----AGLIHKAYKILMQL 487 (767)
Q Consensus 412 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 487 (767)
++.++..+...+...|++++|...|++... +.+...+..+...+.. .+++++|...|++.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----------------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a 68 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD----------------LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKA 68 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH----------------CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHH
Confidence 667888888999999999999999998852 3455678889999999 99999999999999
Q ss_pred HHcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHhhh
Q 047305 488 AESGNLPDIITYNSLINGFCK----VGNINGALKLFKELQLKGLRPDSVTYGTLINGLQR----VDREEDAFRIFGQMPQ 559 (767)
Q Consensus 488 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~ 559 (767)
.+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|+..++++.+
T Consensus 69 ~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~ 142 (273)
T 1ouv_A 69 CDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD 142 (273)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh
Confidence 8875 67888889999999 999999999999999874 67788899999998 9999999999999998
Q ss_pred CCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHhccCCCccchHHHHHHHHh----cCCHHHHHHHHHHhhhcCC
Q 047305 560 NGCTPSPAVYKSLMTWSCR----RRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQ----KGEVENAIQGLLEMDFKLN 631 (767)
Q Consensus 560 ~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 631 (767)
.+ +...+..+..+|.. .+++++|...|+++++. .++.++..++.+|.. .+++++|+..+.+....
T Consensus 143 ~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-- 215 (273)
T 1ouv_A 143 LN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL-- 215 (273)
T ss_dssp TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--
T ss_pred cC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC--
Confidence 65 56777788888888 89999999999999976 457888899999999 99999999999884332
Q ss_pred CCCccchHHHHHHHhh----cCCHHHHHHHHHHHHHcC
Q 047305 632 DFQLAPYTIWLIGLCQ----DGQVKEALNIFSVLVECK 665 (767)
Q Consensus 632 p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 665 (767)
.++.++..++.+|.. .+++++|+++|+++.+.+
T Consensus 216 -~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 216 -ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp -TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred -CCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 225679999999999 999999999999999987
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-14 Score=150.18 Aligned_cols=278 Identities=13% Similarity=0.037 Sum_probs=148.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhh
Q 047305 376 PNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPS----VGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRL 451 (767)
Q Consensus 376 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 451 (767)
.....+......+...|++++|+..|+++.+.+.. + ..++..+...+...|++++|...+++.... .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~--- 77 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL-----A--- 77 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----H---
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----H---
Confidence 34555666677777888888888888887776432 3 246677777888888888888888775310 0
Q ss_pred ccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HhhHHHHHHHHHhcCC---------------
Q 047305 452 SQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNL-PD----IITYNSLINGFCKVGN--------------- 511 (767)
Q Consensus 452 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~--------------- 511 (767)
......+....++..++..+...|++++|...++++.+.... ++ ..++..+...|...|+
T Consensus 78 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~ 157 (406)
T 3sf4_A 78 RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPE 157 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCH
T ss_pred HhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhh
Confidence 000112233445666677777777777777777666543110 11 2355566666666776
Q ss_pred -----HHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCC----HhhHHHHHHHH
Q 047305 512 -----INGALKLFKELQLK----GLRPD-SVTYGTLINGLQRVDREEDAFRIFGQMPQNGC-TPS----PAVYKSLMTWS 576 (767)
Q Consensus 512 -----~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~ 576 (767)
+++|+..+++.... +..|. ..++..+...+...|++++|...++++.+... .++ ..++..++.+|
T Consensus 158 ~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 237 (406)
T 3sf4_A 158 EVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAY 237 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 66666666655432 10111 12455555566666666666666666543200 011 22455555556
Q ss_pred HhcCChhHHHHHHHHHHhccCCC------ccchHHHHHHHHhcCCHHHHHHHHHHh-hhcC----CCCCccchHHHHHHH
Q 047305 577 CRRRKFSLAFSLWLQYLRDISGR------DDESMKSIEEFLQKGEVENAIQGLLEM-DFKL----NDFQLAPYTIWLIGL 645 (767)
Q Consensus 577 ~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~----~p~~~~~~~~l~~~~ 645 (767)
...|++++|...++++++..|.. ..++..++.+|...|++++|+..+.+. .... .+....++..++.+|
T Consensus 238 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~ 317 (406)
T 3sf4_A 238 IFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAY 317 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 66666666666666655443332 223344455555555555554444441 1100 011122344555555
Q ss_pred hhcCCHHHHHHHHHHHH
Q 047305 646 CQDGQVKEALNIFSVLV 662 (767)
Q Consensus 646 ~~~g~~~~A~~~~~~~~ 662 (767)
...|++++|+..+++++
T Consensus 318 ~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 318 TALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 55555555555555543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.62 E-value=6e-15 Score=153.68 Aligned_cols=277 Identities=14% Similarity=0.042 Sum_probs=206.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 047305 414 GMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAES--- 490 (767)
Q Consensus 414 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 490 (767)
..+..+...+...|++++|+..|+++.... | .........+..++..+...|++++|...++++.+.
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~---------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 118 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-T---------EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKS 118 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-C---------SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-c---------cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 345556778889999999999999885210 0 000111257788899999999999999999987653
Q ss_pred -CC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHhcCC-----------------
Q 047305 491 -GN-LPDIITYNSLINGFCKVGNINGALKLFKELQLK----GLRP-DSVTYGTLINGLQRVDR----------------- 546 (767)
Q Consensus 491 -~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~----------------- 546 (767)
+. ......+..+...|...|++++|+..++++... +-.| ...++..+...+...|+
T Consensus 119 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~ 198 (411)
T 4a1s_A 119 MNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA 198 (411)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH
T ss_pred ccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH
Confidence 11 123456778888999999999999999988754 1111 23467788888999999
Q ss_pred HHHHHHHHHHhhhC----CC-CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCcc------chHHHHHHHHhcCC
Q 047305 547 EEDAFRIFGQMPQN----GC-TPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDD------ESMKSIEEFLQKGE 615 (767)
Q Consensus 547 ~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~ 615 (767)
+++|+..+++..+. +. .....++..+..+|...|++++|...|+++++..|.... ++..++.+|...|+
T Consensus 199 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 278 (411)
T 4a1s_A 199 LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQ 278 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcC
Confidence 99999998887652 11 112447778888899999999999999999987766554 77788999999999
Q ss_pred HHHHHHHHHHh-hhc--C--CCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCC-----CCChHhHHHHHHHHHhcCC
Q 047305 616 VENAIQGLLEM-DFK--L--NDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKA-----IVTPPSCVKLIHGLCKRGY 685 (767)
Q Consensus 616 ~~~A~~~~~~~-~~~--~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~ 685 (767)
+++|+..+.+. ... . .+....++..++.+|...|++++|+.+++++++... .....++..++.+|...|+
T Consensus 279 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 358 (411)
T 4a1s_A 279 FEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGG 358 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcc
Confidence 99998888873 211 0 011245688999999999999999999999875421 1124478889999999999
Q ss_pred hhHHHHHHHHHHHCC
Q 047305 686 LDLAMDVFLYTLKNG 700 (767)
Q Consensus 686 ~~~A~~~~~~~~~~~ 700 (767)
+++|..+++++++..
T Consensus 359 ~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 359 HERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998743
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-14 Score=150.64 Aligned_cols=279 Identities=14% Similarity=0.003 Sum_probs=214.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047305 411 PSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAES 490 (767)
Q Consensus 411 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 490 (767)
.....+......+...|++++|...|+++.... | .........+..++..+...|++++|...++++...
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~---------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 76 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-T---------EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL 76 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-C---------SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-c---------ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 456677788889999999999999999985211 0 111112457888999999999999999999987543
Q ss_pred ----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhcCC--------------
Q 047305 491 ----GNLP-DIITYNSLINGFCKVGNINGALKLFKELQLKGLR-PD----SVTYGTLINGLQRVDR-------------- 546 (767)
Q Consensus 491 ----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~-------------- 546 (767)
+..| ....+..+...|...|++++|+..+++....... ++ ..++..+...+...|+
T Consensus 77 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~ 156 (406)
T 3sf4_A 77 ARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFP 156 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCC
T ss_pred HHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhh
Confidence 1111 2456778889999999999999999988764110 12 3367888889999999
Q ss_pred ------HHHHHHHHHHhhhC----CCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCcc------chHHHHHH
Q 047305 547 ------EEDAFRIFGQMPQN----GCTP-SPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDD------ESMKSIEE 609 (767)
Q Consensus 547 ------~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~ 609 (767)
+++|...+++..+. +..+ ...++..++.+|...|++++|...++++++..|.... ++..++.+
T Consensus 157 ~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 236 (406)
T 3sf4_A 157 EEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNA 236 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 99999999887652 1111 2457778888999999999999999999987666555 77889999
Q ss_pred HHhcCCHHHHHHHHHHh-hhcC-CC---CCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCC-----CChHhHHHHHHH
Q 047305 610 FLQKGEVENAIQGLLEM-DFKL-ND---FQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAI-----VTPPSCVKLIHG 679 (767)
Q Consensus 610 ~~~~g~~~~A~~~~~~~-~~~~-~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~ 679 (767)
|...|++++|+..+.+. .... .+ ....++..++.+|...|++++|+..++++++.... ....++..++.+
T Consensus 237 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 316 (406)
T 3sf4_A 237 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNA 316 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 99999999999998883 2110 11 11456889999999999999999999999764211 115678899999
Q ss_pred HHhcCChhHHHHHHHHHHHC
Q 047305 680 LCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 680 ~~~~g~~~~A~~~~~~~~~~ 699 (767)
|...|++++|..+++++++.
T Consensus 317 ~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 317 YTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999998764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.61 E-value=4.4e-14 Score=128.32 Aligned_cols=167 Identities=13% Similarity=0.072 Sum_probs=148.5
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHH
Q 047305 564 PSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLI 643 (767)
Q Consensus 564 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~ 643 (767)
.+..+|..++.+|.+.|++++|++.|+++++.+|.++.++..++.+|...|++++|+..+.+... ..|.++.++..++.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV-LDTTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCCCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCchhHHHHHHHHH
Confidence 46778999999999999999999999999999999999999999999999999999999988532 35888888999999
Q ss_pred HHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhhcCCcc
Q 047305 644 GLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRV-CNYLLRSLLFSKDNK 722 (767)
Q Consensus 644 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~~ 722 (767)
.+...+++++|...++++.+.. |.++.++..++.+|...|++++|+..|+++++.. |+... +..+...+. ..|+
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~lg~~~~-~~g~- 156 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK--PGFIRAYQSIGLAYE-GKGL- 156 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH-HTTC-
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc--chhhhHHHHHHHHHH-HCCC-
Confidence 9999999999999999999987 8889999999999999999999999999999854 66554 444555554 8888
Q ss_pred HHHHHHHHHHHHHc
Q 047305 723 KVHAYHLLCRMKSV 736 (767)
Q Consensus 723 ~~~a~~~~~~~~~~ 736 (767)
+++|...+++..+.
T Consensus 157 ~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 157 RDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998864
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.3e-14 Score=149.24 Aligned_cols=272 Identities=15% Similarity=0.091 Sum_probs=207.0
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-C
Q 047305 460 DKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDI----ITYNSLINGFCKVGNINGALKLFKELQLK----GLRP-D 530 (767)
Q Consensus 460 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~ 530 (767)
....+..++..+...|++++|...|+++.+.... +. ..|..+..+|...|++++|+..++++... +..| .
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 3445556788899999999999999999887433 33 46788889999999999999999988753 1111 2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhC----C-CCCCHhhHHHHHHHHHhcCC-----------------hhHHHHH
Q 047305 531 SVTYGTLINGLQRVDREEDAFRIFGQMPQN----G-CTPSPAVYKSLMTWSCRRRK-----------------FSLAFSL 588 (767)
Q Consensus 531 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~ 588 (767)
...+..+...|...|++++|...++++.+. + .+....++..+..+|...|+ +++|.+.
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 356788889999999999999999998763 1 12235577888889999999 9999999
Q ss_pred HHHHHhcc------CCCccchHHHHHHHHhcCCHHHHHHHHHHh-hhcCCCCCc------cchHHHHHHHhhcCCHHHHH
Q 047305 589 WLQYLRDI------SGRDDESMKSIEEFLQKGEVENAIQGLLEM-DFKLNDFQL------APYTIWLIGLCQDGQVKEAL 655 (767)
Q Consensus 589 ~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~ 655 (767)
++++++.. +....++..++.+|...|++++|+..+.+. ... |... .++..++.+|...|++++|+
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 283 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA--REFGDRAAERRANSNLGNSHIFLGQFEDAA 283 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHTCHHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH--HhcCCcHHHHHHHHHHHHHHHHCcCHHHHH
Confidence 99988543 223346778899999999999999998883 221 2222 26899999999999999999
Q ss_pred HHHHHHHHcCCCC------ChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCC----CCCHHHHHHHHHHHhhcCCccHHH
Q 047305 656 NIFSVLVECKAIV------TPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGF----ILRPRVCNYLLRSLLFSKDNKKVH 725 (767)
Q Consensus 656 ~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~l~~~~~~~~~~ 725 (767)
..++++++.. +. ...++..++.+|...|++++|..+++++++... .+........+..++...|+ +++
T Consensus 284 ~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~ 361 (411)
T 4a1s_A 284 EHYKRTLALA-VELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGG-HER 361 (411)
T ss_dssp HHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-HHH
T ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcc-HHH
Confidence 9999997653 21 156788999999999999999999999986421 11111122333334448888 999
Q ss_pred HHHHHHHHHHc
Q 047305 726 AYHLLCRMKSV 736 (767)
Q Consensus 726 a~~~~~~~~~~ 736 (767)
|...+++..+.
T Consensus 362 A~~~~~~al~~ 372 (411)
T 4a1s_A 362 ALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999997743
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.6e-14 Score=143.25 Aligned_cols=275 Identities=14% Similarity=0.042 Sum_probs=161.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCC
Q 047305 381 FTILICGMCRNGMVDDAQKLFNKMEKAGCFPS----VGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGN 456 (767)
Q Consensus 381 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 456 (767)
+......+...|++++|+..++++.+.... + ...+..+...+...|++++|...+++.... .. ....
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~~---~~~~ 78 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL-----AR---TIGD 78 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----HH---HHTC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----hh---cccc
Confidence 444556677778888888888887775422 3 345667777777788888888777665300 00 0000
Q ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----h
Q 047305 457 RVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGL-RPD----S 531 (767)
Q Consensus 457 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~ 531 (767)
.+... ..+..+...+...|++++|...+++...... .++ .
T Consensus 79 ~~~~~-----------------------------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 123 (338)
T 3ro2_A 79 QLGEA-----------------------------------KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEA 123 (338)
T ss_dssp HHHHH-----------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHH-----------------------------------HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHH
Confidence 11112 2344444455555555555555554443210 001 1
Q ss_pred hhHHHHHHHHHhcCC--------------------HHHHHHHHHHhhhC----CC-CCCHhhHHHHHHHHHhcCChhHHH
Q 047305 532 VTYGTLINGLQRVDR--------------------EEDAFRIFGQMPQN----GC-TPSPAVYKSLMTWSCRRRKFSLAF 586 (767)
Q Consensus 532 ~~~~~l~~~~~~~~~--------------------~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~ 586 (767)
.++..+...+...|+ +++|...+++..+. +. .....++..+..++...|++++|.
T Consensus 124 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 203 (338)
T 3ro2_A 124 RALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAV 203 (338)
T ss_dssp HHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 244455555555555 56666555554331 11 112335556666677777777777
Q ss_pred HHHHHHHhccCCCcc------chHHHHHHHHhcCCHHHHHHHHHHh-hhc--C--CCCCccchHHHHHHHhhcCCHHHHH
Q 047305 587 SLWLQYLRDISGRDD------ESMKSIEEFLQKGEVENAIQGLLEM-DFK--L--NDFQLAPYTIWLIGLCQDGQVKEAL 655 (767)
Q Consensus 587 ~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~-~~~--~--~p~~~~~~~~l~~~~~~~g~~~~A~ 655 (767)
..++++++..+.... ++..++.++...|++++|+..+.+. ... . .+....++..++.+|...|++++|+
T Consensus 204 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 283 (338)
T 3ro2_A 204 IAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAI 283 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHH
Confidence 777777755443332 5556677777777777776666662 111 0 0111445778888888889999998
Q ss_pred HHHHHHHHcCC-----CCChHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047305 656 NIFSVLVECKA-----IVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 656 ~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 699 (767)
..++++++... +....++..++.+|...|++++|..+++++++.
T Consensus 284 ~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 284 DYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 88888865421 111446778888888899999999998888764
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=9.2e-14 Score=135.65 Aligned_cols=244 Identities=10% Similarity=-0.080 Sum_probs=111.3
Q ss_pred CCHHHHHHHHHHHHhCCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 047305 357 GLLDQARSLQVEIWKRDSL---PNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKAN 433 (767)
Q Consensus 357 ~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 433 (767)
|++++|...++.+.+.... .+..++..+...+...|++++|...|+++.+.... +..++..+...+...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHHH
Confidence 4455555555555544211 12344555555555555666666555555554321 4455555555555555555555
Q ss_pred HHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHH
Q 047305 434 LLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNIN 513 (767)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 513 (767)
..|+++.. ..+.+...+..++..+...|++++|...++++.+.. |+.......+..+...|+++
T Consensus 98 ~~~~~al~--------------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~ 161 (275)
T 1xnf_A 98 EAFDSVLE--------------LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEK 161 (275)
T ss_dssp HHHHHHHH--------------HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHh--------------cCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHH
Confidence 55555431 011123334444444444444444444444444432 22222222222334445566
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC---CHhhHHHHHHHHHhcCChhHHHHHHH
Q 047305 514 GALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTP---SPAVYKSLMTWSCRRRKFSLAFSLWL 590 (767)
Q Consensus 514 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~ 590 (767)
+|...+++..... .++... ..++..+...++.++|...+.++.+..... +..++..++.+|.+.|++++|...|+
T Consensus 162 ~A~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 239 (275)
T 1xnf_A 162 QAKEVLKQHFEKS-DKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFK 239 (275)
T ss_dssp HHHHHHHHHHHHS-CCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-CcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6666655554432 112222 224444455555555555555554321100 13444555555555555555555555
Q ss_pred HHHhccCCCccchHHHHHHHHhcCCHHHHHHH
Q 047305 591 QYLRDISGRDDESMKSIEEFLQKGEVENAIQG 622 (767)
Q Consensus 591 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 622 (767)
++++..|.+.. ..+.++...|++++|++.
T Consensus 240 ~al~~~p~~~~---~~~~~~~~l~~~~~a~~~ 268 (275)
T 1xnf_A 240 LAVANNVHNFV---EHRYALLELSLLGQDQDD 268 (275)
T ss_dssp HHHTTCCTTCH---HHHHHHHHHHHHHHC---
T ss_pred HHHhCCchhHH---HHHHHHHHHHHHHhhHHH
Confidence 55555444322 223344444555544433
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.7e-14 Score=143.47 Aligned_cols=230 Identities=7% Similarity=-0.006 Sum_probs=123.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC-----hhhHH
Q 047305 467 MVEQYCTAGLIHKAYKILMQLAES----GNLP-DIITYNSLINGFCKVGNINGALKLFKELQLKGL-RPD-----SVTYG 535 (767)
Q Consensus 467 l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~-----~~~~~ 535 (767)
.+..+...|++++|...++++.+. +..+ ...++..+..+|...|++++|+..+++..+... .++ ..++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455566667777777777766543 1111 124556666666677777777777666654210 011 13455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhC----CCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHh-----cc-CCCccchH
Q 047305 536 TLINGLQRVDREEDAFRIFGQMPQN----GCTP-SPAVYKSLMTWSCRRRKFSLAFSLWLQYLR-----DI-SGRDDESM 604 (767)
Q Consensus 536 ~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-p~~~~~~~ 604 (767)
.+..+|...|++++|...++++++. +..+ ...++..++.+|...|++++|...|+++++ .. |....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 6666666666666666666666542 1000 123555566666666666666666666665 33 44444555
Q ss_pred HHHHHHHhcCCHHHHHHHHHH-hhhc---CCCCCccchHHHHHHHhhcCC---HHHHHHHHHHHHHcCCCCChHhHHHHH
Q 047305 605 KSIEEFLQKGEVENAIQGLLE-MDFK---LNDFQLAPYTIWLIGLCQDGQ---VKEALNIFSVLVECKAIVTPPSCVKLI 677 (767)
Q Consensus 605 ~l~~~~~~~g~~~~A~~~~~~-~~~~---~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~ 677 (767)
.++.+|...|++++|...+.+ +... .+|.....+..++.+|...|+ +++|+.++++.. ..+....++..++
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la 346 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM--LYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc--CHHHHHHHHHHHH
Confidence 666666666666666555555 2110 112222224455556666665 555555555541 1122233455566
Q ss_pred HHHHhcCChhHHHHHHHHHHH
Q 047305 678 HGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 678 ~~~~~~g~~~~A~~~~~~~~~ 698 (767)
.+|...|++++|..+|+++++
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 666666666666666665544
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.6e-14 Score=150.48 Aligned_cols=214 Identities=8% Similarity=-0.065 Sum_probs=180.1
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHH
Q 047305 511 NINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDRE-EDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLW 589 (767)
Q Consensus 511 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 589 (767)
.+++++..+++..... ..+...+..+..++...|++ ++|+..|+++++.. +.+...+..++.+|.+.|++++|.+.|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4667777887766542 23667888999999999999 99999999998864 446889999999999999999999999
Q ss_pred HHHHhccCCCccchHHHHHHHHhc---------CCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhc--------CCHH
Q 047305 590 LQYLRDISGRDDESMKSIEEFLQK---------GEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQD--------GQVK 652 (767)
Q Consensus 590 ~~~~~~~p~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~--------g~~~ 652 (767)
+++++..|. ..++..++.++... |++++|+..+.+... ..|.++.+|..++.+|... |+++
T Consensus 161 ~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 161 SGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ-MDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 999999998 68889999999999 999999999998432 3599999999999999999 9999
Q ss_pred HHHHHHHHHHHcCCC---CChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHH
Q 047305 653 EALNIFSVLVECKAI---VTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHL 729 (767)
Q Consensus 653 ~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~ 729 (767)
+|+..|+++++.+ | .++.++..++.+|...|++++|+..|+++++.. |+.......+..++...|+ +++|...
T Consensus 239 ~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~a~~~l~~~~~~lg~-~~eAi~~ 314 (474)
T 4abn_A 239 QALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD--PAWPEPQQREQQLLEFLSR-LTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 9999999999987 6 789999999999999999999999999999854 7765544444444436666 7777765
Q ss_pred HHH
Q 047305 730 LCR 732 (767)
Q Consensus 730 ~~~ 732 (767)
+++
T Consensus 315 ~~~ 317 (474)
T 4abn_A 315 KGK 317 (474)
T ss_dssp TTT
T ss_pred hcc
Confidence 443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.57 E-value=2.4e-11 Score=130.98 Aligned_cols=442 Identities=12% Similarity=0.052 Sum_probs=259.1
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHH
Q 047305 185 EVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRR---VDEALALL 261 (767)
Q Consensus 185 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~ 261 (767)
.+-...|++.+..+. -|..+|..++..+.+.+.++.+..+|+++... ++.....|..-+..-.+.++ ++.+..+|
T Consensus 49 ~d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp SCHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 334445555555543 37888888888888888888888888888876 45566677777777777777 88888888
Q ss_pred HHHHhCCC-CCCcccHHHHHHHHHhcCCH--------HHHHHHHHHHHH-CCC-CCC-HHHHHHHHHHHHh---------
Q 047305 262 RSFEKDGF-VPRLGSYSCLIDGLFRAKRY--------DEAYAWYRKMFE-EKI-EPD-VVLYGVMIRGLSE--------- 320 (767)
Q Consensus 262 ~~~~~~~~-~~~~~~~~~li~~~~~~~~~--------~~A~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~~--------- 320 (767)
++.+.... .|++..|...+....+.++. +...++|+..+. .|. .++ ...|...+.....
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 88877531 35666777766655554432 334466666554 244 443 4567766665432
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047305 321 AGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKL 400 (767)
Q Consensus 321 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 400 (767)
.++++.+..+|+.+.......-..+|......-...+. ..+.+++.+ ...+++.|...
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e---------------------~~~~y~~Ar~~ 264 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGE---------------------LSAQYMNARSL 264 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH---------------------HHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHH---------------------hhHHHHHHHHH
Confidence 33456677777777642111111222221111100000 001111111 01122333343
Q ss_pred HHHHHHc--CCC---------------C-----C---HHHHHHHHHHHHHcC-------CHHHHHHHHHHhhcCCCchhh
Q 047305 401 FNKMEKA--GCF---------------P-----S---VGMFNALIDGLCKAG-------ELEKANLLFYKMEIGKNPTLF 448 (767)
Q Consensus 401 ~~~~~~~--~~~---------------~-----~---~~~~~~l~~~~~~~~-------~~~~A~~~~~~~~~~~~~~~~ 448 (767)
+.++... ++. | + ...|...+..-...+ ..+.+..+|++..
T Consensus 265 ~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL-------- 336 (679)
T 4e6h_A 265 YQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAA-------- 336 (679)
T ss_dssp HHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHH--------
Confidence 4332210 110 1 0 123444443222211 0122344555553
Q ss_pred hhhccCCCCcchHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 047305 449 LRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAY-KILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGL 527 (767)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 527 (767)
...+..+..|...+..+...|+.++|. .+|++..... +.+...|...+......|++++|..+|+.+.....
T Consensus 337 ------~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~ 409 (679)
T 4e6h_A 337 ------QHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIH 409 (679)
T ss_dssp ------HHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ------HHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 224456777778888888888888886 8888887653 34556677777777788888888888888875310
Q ss_pred ---------CCC------------hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhc-CChhHH
Q 047305 528 ---------RPD------------SVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRR-RKFSLA 585 (767)
Q Consensus 528 ---------~p~------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A 585 (767)
.|+ ...|...++...+.|..+.|+.+|.++++.-......+|...+..-.+. ++.+.|
T Consensus 410 ~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~A 489 (679)
T 4e6h_A 410 LDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTA 489 (679)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHH
T ss_pred HHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHH
Confidence 132 2356667777777788888888888887641122334444444433344 447888
Q ss_pred HHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCC-C-CCccchHHHHHHHhhcCCHHHHHHHHHHHHH
Q 047305 586 FSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLN-D-FQLAPYTIWLIGLCQDGQVKEALNIFSVLVE 663 (767)
Q Consensus 586 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 663 (767)
..+|+.+++..|.++..+...+......|+.+.|...+.+...... + .....|..++..-...|+.+.+..+.+++.+
T Consensus 490 r~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~ 569 (679)
T 4e6h_A 490 CKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE 569 (679)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888888888877777777777777888888777777432221 1 2334566666666677888888888888877
Q ss_pred cC
Q 047305 664 CK 665 (767)
Q Consensus 664 ~~ 665 (767)
..
T Consensus 570 ~~ 571 (679)
T 4e6h_A 570 KF 571 (679)
T ss_dssp HS
T ss_pred hC
Confidence 75
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.57 E-value=5.9e-11 Score=127.90 Aligned_cols=223 Identities=7% Similarity=-0.132 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH-HHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHH
Q 047305 513 NGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAF-RIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQ 591 (767)
Q Consensus 513 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 591 (767)
+.+..+|++++... .-....|...+..+...|+.++|. .+|++++.. .+.+...+..++....+.|+++.|.++|++
T Consensus 326 ~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34567788888763 236678888888888889888996 999999874 455666777888888899999999999999
Q ss_pred HHhcc-----------CC-----------CccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhc-
Q 047305 592 YLRDI-----------SG-----------RDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQD- 648 (767)
Q Consensus 592 ~~~~~-----------p~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~- 648 (767)
+++.. |. ...+|...+....+.|+.+.|...+.+......+.....|...+..-.+.
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhC
Confidence 98753 32 12356666777778899999988888843221122334455555555554
Q ss_pred CCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhhcCCccHHHH
Q 047305 649 GQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILR--PRVCNYLLRSLLFSKDNKKVHA 726 (767)
Q Consensus 649 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~a 726 (767)
++.+.|..+|+.+++.. +.++..+..+++.....|+.+.|+.+|++++.....++ ..++...+.+=. ..|. .+.+
T Consensus 484 ~d~e~Ar~ife~~Lk~~-p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~-~~G~-~~~~ 560 (679)
T 4e6h_A 484 KDTKTACKVLELGLKYF-ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFES-KVGS-LNSV 560 (679)
T ss_dssp SCCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHH-HTCC-SHHH
T ss_pred CCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-HcCC-HHHH
Confidence 45899999999998874 77888888999988899999999999999987542111 234555555544 7787 8899
Q ss_pred HHHHHHHHHcCCCCCC
Q 047305 727 YHLLCRMKSVGYDLDA 742 (767)
Q Consensus 727 ~~~~~~~~~~~~~~~~ 742 (767)
..+.+++.+. .|+.
T Consensus 561 ~~v~~R~~~~--~P~~ 574 (679)
T 4e6h_A 561 RTLEKRFFEK--FPEV 574 (679)
T ss_dssp HHHHHHHHHH--STTC
T ss_pred HHHHHHHHHh--CCCC
Confidence 9999998865 4553
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.57 E-value=9.6e-13 Score=130.38 Aligned_cols=217 Identities=9% Similarity=-0.020 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh-------cCCH-------HHHHHHHHHHHHCCCCC-ChhhHHHHHHHHH
Q 047305 478 HKAYKILMQLAESGNLPDIITYNSLINGFCK-------VGNI-------NGALKLFKELQLKGLRP-DSVTYGTLINGLQ 542 (767)
Q Consensus 478 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 542 (767)
++|...|+++.... +.+...|..++..+.. .|++ ++|..+|++.+.. +.| +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHH
Confidence 56666777666542 2355566666655542 3554 6666666666652 123 3345666666666
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCC-Hh-hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHH-hcCCHHHH
Q 047305 543 RVDREEDAFRIFGQMPQNGCTPS-PA-VYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFL-QKGEVENA 619 (767)
Q Consensus 543 ~~~~~~~A~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~A 619 (767)
..|++++|..+|+++++. .|+ .. +|..++..+.+.|++++|..+|+++++..|.....+...+.... ..|++++|
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 666677777777666653 332 22 56666666666666777777777666666665555544443322 25666666
Q ss_pred HHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcC-CCC--ChHhHHHHHHHHHhcCChhHHHHHHHHH
Q 047305 620 IQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECK-AIV--TPPSCVKLIHGLCKRGYLDLAMDVFLYT 696 (767)
Q Consensus 620 ~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 696 (767)
+..+.+... ..|.++.+|..++..+.+.|++++|+.+|+++++.+ ++| ....|..++..+...|+.++|..+++++
T Consensus 189 ~~~~~~al~-~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLK-KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHH-HHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHH-hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666665211 236666666666666666666666666666666642 122 3445666666666666666666666666
Q ss_pred HHC
Q 047305 697 LKN 699 (767)
Q Consensus 697 ~~~ 699 (767)
++.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.3e-12 Score=129.49 Aligned_cols=219 Identities=10% Similarity=-0.008 Sum_probs=177.9
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHH-------hcCCH-------HHHHHHHHHhhhCCCCCCHhhHHHHHHHHHh
Q 047305 513 NGALKLFKELQLKGLRPDSVTYGTLINGLQ-------RVDRE-------EDAFRIFGQMPQNGCTPSPAVYKSLMTWSCR 578 (767)
Q Consensus 513 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-------~~~~~-------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 578 (767)
++|+..|++++... +-+...|..++..+. ..|++ ++|..+|+++++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 68889999998863 225667877777765 35775 8999999999973124456789999999999
Q ss_pred cCChhHHHHHHHHHHhccCCCcc-chHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhh-cCCHHHHHH
Q 047305 579 RRKFSLAFSLWLQYLRDISGRDD-ESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQ-DGQVKEALN 656 (767)
Q Consensus 579 ~g~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~-~g~~~~A~~ 656 (767)
.|++++|..+|+++++..|.++. ++..++..+.+.|++++|+..+.+... ..|.+...|...+..... .|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-~~p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE-DARTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT-STTCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999999999887 899999999999999999999988432 346666666655555333 699999999
Q ss_pred HHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhhcCCccHHHHHHHHHHH
Q 047305 657 IFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNG-FILR--PRVCNYLLRSLLFSKDNKKVHAYHLLCRM 733 (767)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~--~~~~~~l~~~l~~~~~~~~~~a~~~~~~~ 733 (767)
+|+++++.. |.++..|..++..+.+.|++++|+.+|++++... +.|+ ..++..++.... ..|+ .++|..+++++
T Consensus 191 ~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~-~~g~-~~~a~~~~~~a 267 (308)
T 2ond_A 191 IFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES-NIGD-LASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHH-HHSC-HHHHHHHHHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH-HcCC-HHHHHHHHHHH
Confidence 999999886 7889999999999999999999999999999863 3453 345666666665 7787 99999999998
Q ss_pred HHc
Q 047305 734 KSV 736 (767)
Q Consensus 734 ~~~ 736 (767)
.+.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-13 Score=130.71 Aligned_cols=206 Identities=11% Similarity=0.004 Sum_probs=120.2
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHH
Q 047305 495 DIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMT 574 (767)
Q Consensus 495 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 574 (767)
++..+......+...|++++|+..|++.......++...+..+..++...|++++|+..++++++.. +.+...+..++.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 4456666666677777777777777777665432455555556666677777777777777766642 234556666666
Q ss_pred HHHhcCChhHHHHHHHHHHhccCCCc-------cchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC--CccchHHHHHHH
Q 047305 575 WSCRRRKFSLAFSLWLQYLRDISGRD-------DESMKSIEEFLQKGEVENAIQGLLEMDFKLNDF--QLAPYTIWLIGL 645 (767)
Q Consensus 575 ~~~~~g~~~~A~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~--~~~~~~~l~~~~ 645 (767)
+|...|++++|+..|+++++..|.++ .++..++..+...|++++|+..+.+... ..|+ ++.++..++.+|
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD-VTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-SSCHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh-cCCCcccHHHHHHHHHHH
Confidence 67777777777777777777777666 4455566666666666666666665321 2455 555566666666
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047305 646 CQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLL 712 (767)
Q Consensus 646 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 712 (767)
...| ...++++...+ +.++..+.. ......+.+++|+.+|+++++.. |+......++
T Consensus 164 ~~~~-----~~~~~~a~~~~-~~~~~~~~~--~~~~~~~~~~~A~~~~~~a~~l~--p~~~~~~~~l 220 (228)
T 4i17_A 164 YNNG-----ADVLRKATPLA-SSNKEKYAS--EKAKADAAFKKAVDYLGEAVTLS--PNRTEIKQMQ 220 (228)
T ss_dssp HHHH-----HHHHHHHGGGT-TTCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred HHHH-----HHHHHHHHhcc-cCCHHHHHH--HHHHHHHHHHHHHHHHHHHhhcC--CCCHHHHHHH
Confidence 4333 33344444443 233333222 22334455677777777776643 5554444333
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=7.3e-14 Score=152.52 Aligned_cols=164 Identities=14% Similarity=0.054 Sum_probs=147.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHH
Q 047305 531 SVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEF 610 (767)
Q Consensus 531 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 610 (767)
..+++.+..++.+.|++++|+..|+++++.. +.+...+..++.+|.+.|++++|++.|+++++..|++..++.+++.+|
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4578889999999999999999999998853 445778889999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHH-hhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHH
Q 047305 611 LQKGEVENAIQGLLE-MDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLA 689 (767)
Q Consensus 611 ~~~g~~~~A~~~~~~-~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 689 (767)
.+.|++++|++.+.+ +. .+|+++.+|..++.+|...|++++|++.|+++++.+ |.++.++..++.+|...|++++|
T Consensus 88 ~~~g~~~~A~~~~~kAl~--l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQ--INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHH
Confidence 999999999999888 44 359999999999999999999999999999999987 88899999999999999999999
Q ss_pred HHHHHHHHH
Q 047305 690 MDVFLYTLK 698 (767)
Q Consensus 690 ~~~~~~~~~ 698 (767)
.+.++++++
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999876
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-13 Score=138.98 Aligned_cols=271 Identities=14% Similarity=0.074 Sum_probs=203.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-Chh
Q 047305 462 ASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPD----IITYNSLINGFCKVGNINGALKLFKELQLK----GLRP-DSV 532 (767)
Q Consensus 462 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~ 532 (767)
..+...+..+...|++++|...|+++.+.... + ...+..+...+...|++++|+..++++... +..| ...
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 34556678889999999999999999887433 3 356788889999999999999999987643 1111 234
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCC----HhhHHHHHHHHHhcCC--------------------hhHHHH
Q 047305 533 TYGTLINGLQRVDREEDAFRIFGQMPQNGC-TPS----PAVYKSLMTWSCRRRK--------------------FSLAFS 587 (767)
Q Consensus 533 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~A~~ 587 (767)
++..+...+...|++++|...++++.+... .++ ..++..+..++...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 678888999999999999999999875310 111 3477788888999999 999999
Q ss_pred HHHHHHhc------cCCCccchHHHHHHHHhcCCHHHHHHHHHHh-hhcC----CCCCccchHHHHHHHhhcCCHHHHHH
Q 047305 588 LWLQYLRD------ISGRDDESMKSIEEFLQKGEVENAIQGLLEM-DFKL----NDFQLAPYTIWLIGLCQDGQVKEALN 656 (767)
Q Consensus 588 ~~~~~~~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~----~p~~~~~~~~l~~~~~~~g~~~~A~~ 656 (767)
.++++++. .+....++..++..+...|++++|+..+.+. .... .+....++..++.+|...|++++|+.
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99988754 2223346678899999999999999998883 2110 11122368999999999999999999
Q ss_pred HHHHHHHcCCCCC------hHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCH---H-HHHHHHHHHhhcCCccHHH
Q 047305 657 IFSVLVECKAIVT------PPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFI-LRP---R-VCNYLLRSLLFSKDNKKVH 725 (767)
Q Consensus 657 ~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~---~-~~~~l~~~l~~~~~~~~~~ 725 (767)
.++++++.. +.. ..++..++.+|...|++++|...++++++.... .++ . .+..+...+. ..|+ +++
T Consensus 245 ~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~-~~g~-~~~ 321 (338)
T 3ro2_A 245 YYKKTLLLA-RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT-ALGN-HDQ 321 (338)
T ss_dssp HHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HHTC-HHH
T ss_pred HHHHHHHHH-HhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH-HcCC-hHH
Confidence 999987543 222 567888999999999999999999999764211 111 1 2333444444 7888 999
Q ss_pred HHHHHHHHHHc
Q 047305 726 AYHLLCRMKSV 736 (767)
Q Consensus 726 a~~~~~~~~~~ 736 (767)
|...+++..+.
T Consensus 322 A~~~~~~a~~~ 332 (338)
T 3ro2_A 322 AMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHH
Confidence 99999998754
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-13 Score=151.08 Aligned_cols=165 Identities=12% Similarity=0.034 Sum_probs=147.4
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHH-hhhcCCCCCccchHHHH
Q 047305 564 PSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLE-MDFKLNDFQLAPYTIWL 642 (767)
Q Consensus 564 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~p~~~~~~~~l~ 642 (767)
.+...+..++.+|.+.|++++|++.|+++++..|++..++.+++.+|.+.|++++|+..+.+ +. .+|+++.+|..++
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999998 44 3699999999999
Q ss_pred HHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCcc
Q 047305 643 IGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNK 722 (767)
Q Consensus 643 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 722 (767)
.+|...|++++|++.|+++++.+ |.+..++..++.+|...|++++|+..|+++++.. |+.......+...+...|+
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~--P~~~~a~~~L~~~l~~~g~- 160 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK--PDFPDAYCNLAHCLQIVCD- 160 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTC-
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHhhhhhHHHhccc-
Confidence 99999999999999999999997 8889999999999999999999999999999854 8765544444444448887
Q ss_pred HHHHHHHHHHHH
Q 047305 723 KVHAYHLLCRMK 734 (767)
Q Consensus 723 ~~~a~~~~~~~~ 734 (767)
+++|.+.++++.
T Consensus 161 ~~~A~~~~~kal 172 (723)
T 4gyw_A 161 WTDYDERMKKLV 172 (723)
T ss_dssp CTTHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 899988888866
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-12 Score=134.64 Aligned_cols=236 Identities=12% Similarity=-0.063 Sum_probs=182.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C---
Q 047305 419 LIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNL-P--- 494 (767)
Q Consensus 419 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~--- 494 (767)
....+...|++++|...|++..... ...........++..++..+...|+++.|...+++..+.... +
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 180 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKL--------IFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTG--------GGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHH--------hhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch
Confidence 5567788999999999999985210 000112235578889999999999999999999988653111 1
Q ss_pred --CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHhhhC----CC-
Q 047305 495 --DIITYNSLINGFCKVGNINGALKLFKELQLKGLR-PD----SVTYGTLINGLQRVDREEDAFRIFGQMPQN----GC- 562 (767)
Q Consensus 495 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~- 562 (767)
...+++.+..+|...|++++|+..+++....... ++ ..++..+..+|...|++++|+..++++.+. +.
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 260 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL 260 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence 1356788889999999999999999998854111 12 137888999999999999999999998872 33
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccC-----CCccchHHHHHHHHhcCC---HHHHHHHHHHhhhcCCCCC
Q 047305 563 TPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDIS-----GRDDESMKSIEEFLQKGE---VENAIQGLLEMDFKLNDFQ 634 (767)
Q Consensus 563 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~p~~ 634 (767)
+....++..++.+|.+.|++++|...++++++..+ .....+..++..|...|+ .++|+..+.+... .|..
T Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~~~~ 338 (383)
T 3ulq_A 261 PSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--YADL 338 (383)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--HHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--HHHH
Confidence 33466788899999999999999999999996532 222334568889999999 8888888877632 2555
Q ss_pred ccchHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 047305 635 LAPYTIWLIGLCQDGQVKEALNIFSVLVEC 664 (767)
Q Consensus 635 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 664 (767)
..++..++.+|...|++++|..+++++++.
T Consensus 339 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 339 EDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 667889999999999999999999999753
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.4e-13 Score=135.35 Aligned_cols=243 Identities=12% Similarity=0.012 Sum_probs=170.3
Q ss_pred CCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--
Q 047305 455 GNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAES-------GNLPDIITYNSLINGFCKVGNINGALKLFKELQLK-- 525 (767)
Q Consensus 455 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 525 (767)
...+.....+..++..+...|++++|...++++.+. ........+..+...|...|++++|+..++++...
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 334556778889999999999999999999988763 22234567788889999999999999999988764
Q ss_pred ----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC------CCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047305 526 ----GLRP-DSVTYGTLINGLQRVDREEDAFRIFGQMPQN------GCTP-SPAVYKSLMTWSCRRRKFSLAFSLWLQYL 593 (767)
Q Consensus 526 ----~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 593 (767)
+-.| ...++..+...+...|++++|...++++.+. +..| ....+..++.++...|++++|.++|++++
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2122 2456788888999999999999999998763 2222 35567788888999999999999999998
Q ss_pred hc--------cCCCccchHHHHHHHHhcCCHHHHHHHHHHhhh--------cCCCCCccchHHHH------HHHhhcCCH
Q 047305 594 RD--------ISGRDDESMKSIEEFLQKGEVENAIQGLLEMDF--------KLNDFQLAPYTIWL------IGLCQDGQV 651 (767)
Q Consensus 594 ~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~p~~~~~~~~l~------~~~~~~g~~ 651 (767)
+. .|....++..++.+|...|++++|+..+.+... ...+.....+..+. ..+...+.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (311)
T 3nf1_A 181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSF 260 (311)
T ss_dssp HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCS
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHH
Confidence 66 444555677888889999999999888887321 12233333333333 333344566
Q ss_pred HHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 652 KEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 652 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
.+|...++++.... +....++..++.+|...|++++|..+|+++++
T Consensus 261 ~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 261 GEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 67777777777654 66677888899999999999999999988876
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.52 E-value=6.5e-13 Score=125.32 Aligned_cols=212 Identities=11% Similarity=-0.052 Sum_probs=170.2
Q ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 047305 458 VHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTL 537 (767)
Q Consensus 458 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 537 (767)
..++..+...+..+...|++++|...|+++.+....++...+..+..++...|++++|+..+++....... +...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHH
Confidence 35668899999999999999999999999998865467778888999999999999999999999987422 45678899
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCH-------hhHHHHHHHHHhcCChhHHHHHHHHHHhccCC--CccchHHHHH
Q 047305 538 INGLQRVDREEDAFRIFGQMPQNGCTPSP-------AVYKSLMTWSCRRRKFSLAFSLWLQYLRDISG--RDDESMKSIE 608 (767)
Q Consensus 538 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~ 608 (767)
..++...|++++|+..++++++.. +.+. ..|..+..++...|++++|++.|+++++..|. ++.++..++.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 999999999999999999998853 3344 55788888899999999999999999999999 8899999999
Q ss_pred HHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 047305 609 EFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGL 680 (767)
Q Consensus 609 ~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 680 (767)
+|...|+. .+.+... ..+.+...+ ........+.+++|+..++++++.. |.++.+...+..+.
T Consensus 162 ~~~~~~~~-----~~~~a~~-~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 162 LFYNNGAD-----VLRKATP-LASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLS-PNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHH-----HHHHHGG-GTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHh-cccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHHHH
Confidence 99887764 1222211 123332223 3334456688999999999999987 77777777666553
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-12 Score=118.69 Aligned_cols=165 Identities=13% Similarity=0.035 Sum_probs=131.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHH
Q 047305 532 VTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFL 611 (767)
Q Consensus 532 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 611 (767)
..+..+...+...|++++|...++++.+.. +.+...+..++.++...|++++|...++++++..|.++.++..++..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345666777778888888888888877643 3456777778888888888888888888888888888888888888888
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHH
Q 047305 612 QKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMD 691 (767)
Q Consensus 612 ~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 691 (767)
..|++++|+..+.+... ..|.++..+..++.+|...|++++|+..++++.+.. +.++.++..++.++...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAE-ANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHh-cCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888777432 247777778888888888888888888888888776 6777888888888888888888888
Q ss_pred HHHHHHHC
Q 047305 692 VFLYTLKN 699 (767)
Q Consensus 692 ~~~~~~~~ 699 (767)
.++++++.
T Consensus 166 ~~~~~~~~ 173 (186)
T 3as5_A 166 HFKKANEL 173 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 88888764
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-13 Score=120.15 Aligned_cols=146 Identities=10% Similarity=-0.008 Sum_probs=115.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCH
Q 047305 572 LMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQV 651 (767)
Q Consensus 572 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 651 (767)
|+.++...|++++|++.+++++...|.++..++.++.+|.+.|++++|++.+.+.. ..+|+++.+|..++.+|...|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al-~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYI-NVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCch
Confidence 44556677888889888888888888888888888999999999999988888832 13588888899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHH-HHHHHHCCCCCCHHHHHHHHHHHhhcCCc
Q 047305 652 KEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDV-FLYTLKNGFILRPRVCNYLLRSLLFSKDN 721 (767)
Q Consensus 652 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 721 (767)
++|+..|+++++.+ |.++.++..++.+|.+.|++++|... ++++++. .|+.+....+...++...|+
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCc
Confidence 99999999998887 77888888999999999988876665 5888774 47777766666666655554
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.47 E-value=5.1e-12 Score=129.46 Aligned_cols=233 Identities=8% Similarity=-0.064 Sum_probs=165.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC-----hh
Q 047305 464 LQTMVEQYCTAGLIHKAYKILMQLAESGN-LPD----IITYNSLINGFCKVGNINGALKLFKELQLKGL-RPD-----SV 532 (767)
Q Consensus 464 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~-----~~ 532 (767)
+...+..+...|++++|...|+++.+... .++ ..++..+..+|...|+++.|+..+++...... .++ ..
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 33456667788999999999988865421 122 34677788888899999999998888775311 111 34
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCC-CCHhhHHHHHHHHHhcCChhHHHHHHHHHHh-----ccCCCccc
Q 047305 533 TYGTLINGLQRVDREEDAFRIFGQMPQN----GCT-PSPAVYKSLMTWSCRRRKFSLAFSLWLQYLR-----DISGRDDE 602 (767)
Q Consensus 533 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~~~~~ 602 (767)
+++.+..+|...|++++|...++++++. +.. ....++..++.+|...|++++|+..|+++++ ..|....+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 6777888888899999999888887652 111 1234677788888888999999999988887 77777777
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHH-hhhcC---CCCCccchHHHHHHHhhcCC---HHHHHHHHHHHHHcCCCCChHhHHH
Q 047305 603 SMKSIEEFLQKGEVENAIQGLLE-MDFKL---NDFQLAPYTIWLIGLCQDGQ---VKEALNIFSVLVECKAIVTPPSCVK 675 (767)
Q Consensus 603 ~~~l~~~~~~~g~~~~A~~~~~~-~~~~~---~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~ 675 (767)
+..++.++.+.|++++|+..+.+ +.... +|.....+..++..|...|+ +++|+.++++.. ..+.....+..
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~ 341 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN--LHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC--ChhHHHHHHHH
Confidence 78888888888888888888877 32211 23333345666677777777 777777777632 11333456677
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 047305 676 LIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 676 l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
++.+|...|++++|..+|+++++
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 88888888888888888888765
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.8e-13 Score=134.88 Aligned_cols=237 Identities=10% Similarity=-0.040 Sum_probs=168.1
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC------C
Q 047305 495 DIITYNSLINGFCKVGNINGALKLFKELQLK-------GLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQN------G 561 (767)
Q Consensus 495 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~ 561 (767)
+..++..+...+...|++++|+.+++++... ........+..+...+...|++++|...++++++. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3567888899999999999999999999873 11223456888899999999999999999998763 2
Q ss_pred C-CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhcc--------CCCccchHHHHHHHHhcCCHHHHHHHHHHh-hh---
Q 047305 562 C-TPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDI--------SGRDDESMKSIEEFLQKGEVENAIQGLLEM-DF--- 628 (767)
Q Consensus 562 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~--- 628 (767)
. +....++..++.+|...|++++|...|+++++.. |....++..++.++...|++++|+..+.+. ..
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2 2346678888999999999999999999999764 444556778899999999999999998883 32
Q ss_pred ---cCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcC-------C-CCC------hHhHHHHHHHHHhcCChhHHHH
Q 047305 629 ---KLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECK-------A-IVT------PPSCVKLIHGLCKRGYLDLAMD 691 (767)
Q Consensus 629 ---~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~-~~~------~~~~~~l~~~~~~~g~~~~A~~ 691 (767)
...|....++..++.+|...|++++|+..++++++.. . +.. ...+..++..+...+.+.+|..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1245556679999999999999999999999998642 1 111 2223334445556777888888
Q ss_pred HHHHHHHCCCCCCHHH-HHHHHHHHhhcCCccHHHHHHHHHHHHH
Q 047305 692 VFLYTLKNGFILRPRV-CNYLLRSLLFSKDNKKVHAYHLLCRMKS 735 (767)
Q Consensus 692 ~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~a~~~~~~~~~ 735 (767)
.++++... .|+... +..+...+. ..|+ +++|..++++..+
T Consensus 266 ~~~~~~~~--~~~~~~~~~~la~~~~-~~g~-~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVD--SPTVTTTLKNLGALYR-RQGK-FEAAETLEEAAMR 306 (311)
T ss_dssp ----------CHHHHHHHHHHHHHHH-HHTC-HHHHHHHHHHHHH
T ss_pred HHhhcCCC--CchHHHHHHHHHHHHH-HCCC-HHHHHHHHHHHHH
Confidence 88887653 254444 334444444 8888 9999999998765
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.5e-11 Score=126.01 Aligned_cols=237 Identities=11% Similarity=0.043 Sum_probs=178.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C--
Q 047305 418 ALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNL-P-- 494 (767)
Q Consensus 418 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-- 494 (767)
.....+...|++++|+..|++...-. ......+....++..++..+...|+++.|...++++.+.... +
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~ 177 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKEL--------PFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY 177 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTG--------GGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHH--------hhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc
Confidence 34456778999999999999875210 001122334567888999999999999999999987653111 1
Q ss_pred ---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC----CC
Q 047305 495 ---DIITYNSLINGFCKVGNINGALKLFKELQLK----GLRP-DSVTYGTLINGLQRVDREEDAFRIFGQMPQN----GC 562 (767)
Q Consensus 495 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~ 562 (767)
...+++.+..+|...|++++|+..+++..+. +..+ ...++..+..+|...|++++|+..++++.+. +.
T Consensus 178 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~ 257 (378)
T 3q15_A 178 SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP 257 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG
T ss_pred hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC
Confidence 2356788899999999999999999988763 1111 1246788899999999999999999998861 22
Q ss_pred CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCC-----ccchHHHHHHHHhcCC---HHHHHHHHHHhhhcCCCCC
Q 047305 563 TPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGR-----DDESMKSIEEFLQKGE---VENAIQGLLEMDFKLNDFQ 634 (767)
Q Consensus 563 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-----~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~p~~ 634 (767)
+....++..++.++.+.|++++|...++++++..+.. ...+..+...+...|+ ..+|+..+.+... .|..
T Consensus 258 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~--~~~~ 335 (378)
T 3q15_A 258 DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL--HAYI 335 (378)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC--HHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC--hhHH
Confidence 3346788889999999999999999999999764432 2233456677778888 8888888777432 2445
Q ss_pred ccchHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 047305 635 LAPYTIWLIGLCQDGQVKEALNIFSVLVEC 664 (767)
Q Consensus 635 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 664 (767)
...+..++.+|...|++++|...|+++.+.
T Consensus 336 ~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 336 EACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 566889999999999999999999999754
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.42 E-value=5.7e-12 Score=114.34 Aligned_cols=165 Identities=15% Similarity=0.046 Sum_probs=143.7
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHH
Q 047305 566 PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGL 645 (767)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~ 645 (767)
...+..++..+...|++++|...++++++..|.++.++..++.++...|++++|+..+.+... ..|.++.++..++.+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA-DAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHH
Confidence 456677888899999999999999999999999999999999999999999999999988432 2588888899999999
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhcCCccHH
Q 047305 646 CQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPR-VCNYLLRSLLFSKDNKKV 724 (767)
Q Consensus 646 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~ 724 (767)
...|++++|+..++++.+.. +.++.++..++.++...|++++|...++++++.. |+.. .+..+...+. ..|+ ++
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~-~~~~-~~ 161 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PNEGKVHRAIAFSYE-QMGR-HE 161 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH-HTTC-HH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--ccchHHHHHHHHHHH-HcCC-HH
Confidence 99999999999999999886 7889999999999999999999999999998864 5544 4444555554 8888 99
Q ss_pred HHHHHHHHHHHc
Q 047305 725 HAYHLLCRMKSV 736 (767)
Q Consensus 725 ~a~~~~~~~~~~ 736 (767)
+|...+++..+.
T Consensus 162 ~A~~~~~~~~~~ 173 (186)
T 3as5_A 162 EALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 999999998754
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.40 E-value=7.9e-11 Score=120.47 Aligned_cols=272 Identities=13% Similarity=-0.024 Sum_probs=188.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh----hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCh----hh
Q 047305 463 SLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDII----TYNSLINGFCKVGNINGALKLFKELQLKGL-RPDS----VT 533 (767)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~----~~ 533 (767)
........+...|++++|...+++........+.. .+..+...+...|++++|...+++...... .++. .+
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 34445666778999999999999987764333322 456667788889999999999998875311 1122 23
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhC----CCC--C-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCc-----c
Q 047305 534 YGTLINGLQRVDREEDAFRIFGQMPQN----GCT--P-SPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRD-----D 601 (767)
Q Consensus 534 ~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~ 601 (767)
+..+...+...|++++|...+++.++. +.. | ....+..+..++...|++++|...++++++..+... .
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 566778888999999999999988652 222 2 234566678888899999999999999997665432 3
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHh-hhcCCCCCccchH-----HHHHHHhhcCCHHHHHHHHHHHHHcCCCCC---hHh
Q 047305 602 ESMKSIEEFLQKGEVENAIQGLLEM-DFKLNDFQLAPYT-----IWLIGLCQDGQVKEALNIFSVLVECKAIVT---PPS 672 (767)
Q Consensus 602 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~p~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~ 672 (767)
++..++.++...|++++|...+.+. .....+..+..+. ..+.++...|++++|...++++.+....+. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 4567888899999999999888883 2212222221122 234557789999999999999876542211 224
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCC----CCCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHH
Q 047305 673 CVKLIHGLCKRGYLDLAMDVFLYTLKNGF----ILRPRVCNYLLRSLLFSKDNKKVHAYHLLCRMKS 735 (767)
Q Consensus 673 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~ 735 (767)
+..++.++...|++++|...+++++.... .++.......+...+...|+ .++|...+++...
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~l~~al~ 321 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGR-KSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHH
Confidence 67788999999999999999998865321 11111133333444447787 8999998888663
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=6.9e-13 Score=115.04 Aligned_cols=146 Identities=10% Similarity=-0.073 Sum_probs=122.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCH
Q 047305 537 LINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEV 616 (767)
Q Consensus 537 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 616 (767)
|...+...|++++|+..++...... +.+...+..++.+|.+.|++++|++.|+++++..|.++.++..++.+|...|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 4455667788999999999887632 224556677889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHH-HHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 047305 617 ENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNI-FSVLVECKAIVTPPSCVKLIHGLCKRGY 685 (767)
Q Consensus 617 ~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 685 (767)
++|+..+.+.. ..+|.++.++..++.+|.+.|++++|.+. ++++++.+ |.++.++...+.++...|+
T Consensus 82 ~~A~~~~~~al-~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSV-ELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 99999998832 23699999999999999999999887765 58999987 8889999999998888875
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.38 E-value=2.1e-10 Score=117.37 Aligned_cols=276 Identities=14% Similarity=-0.030 Sum_probs=126.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCc
Q 047305 383 ILICGMCRNGMVDDAQKLFNKMEKAGCFPSVG----MFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRV 458 (767)
Q Consensus 383 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (767)
.....+...|++++|...+++........+.. ++..+...+...|++++|...+++..... . ......
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----~---~~~~~~ 90 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA-----R---QHDVWH 90 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----H---HTTCHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH-----H---hcCcHH
Confidence 34445567788888888888876654222322 45556667777888888888877663100 0 000000
Q ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CC--C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 047305 459 HDKASLQTMVEQYCTAGLIHKAYKILMQLAESG----NL--P-DIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDS 531 (767)
Q Consensus 459 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 531 (767)
.....+..+...+...|++++|...+++..+.. .. | ....+..+...+...|++++|...+++........
T Consensus 91 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-- 168 (373)
T 1hz4_A 91 YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY-- 168 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS--
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc--
Confidence 111223334444444555555555544443211 00 1 11223334444444455555555444444321110
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCC--CccchH-----
Q 047305 532 VTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISG--RDDESM----- 604 (767)
Q Consensus 532 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~----- 604 (767)
+.......+..+..++...|++++|...++++++..+. .+..+.
T Consensus 169 -----------------------------~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 219 (373)
T 1hz4_A 169 -----------------------------QPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 219 (373)
T ss_dssp -----------------------------CGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred -----------------------------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHH
Confidence 00001123334444444555555555555544433211 111111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCCC----ccchHHHHHHHhhcCCHHHHHHHHHHHHHc----CCCCCh-HhHHH
Q 047305 605 KSIEEFLQKGEVENAIQGLLEMDFKLNDFQ----LAPYTIWLIGLCQDGQVKEALNIFSVLVEC----KAIVTP-PSCVK 675 (767)
Q Consensus 605 ~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~-~~~~~ 675 (767)
..+..+...|++++|...+.+.... .|.+ ...+..++.++...|++++|...++++.+. +.+++. .++..
T Consensus 220 ~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 298 (373)
T 1hz4_A 220 VRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL 298 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCCC-CCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 1122344555555555554442111 1111 112445566666666666666666665432 111111 24555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHH
Q 047305 676 LIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 676 l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
++.++...|+.++|...+++++.
T Consensus 299 la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 299 LNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 56666666666666666666654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.38 E-value=2.1e-12 Score=126.43 Aligned_cols=225 Identities=10% Similarity=-0.040 Sum_probs=146.8
Q ss_pred hcCCHHHHHHHHHHHHH-------cCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-ChhhHHHHH
Q 047305 473 TAGLIHKAYKILMQLAE-------SGNLPDIITYNSLINGFCKVGNINGALKLFKELQLK------GLRP-DSVTYGTLI 538 (767)
Q Consensus 473 ~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~p-~~~~~~~l~ 538 (767)
..|++++|...+++..+ ...+....++..+..+|...|++++|+..++++... +-.| ...++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 34555566666555543 222224567778888888999999999998888754 2122 234677888
Q ss_pred HHHHhcCCHHHHHHHHHHhhhC------C-CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhc--------cCCCccch
Q 047305 539 NGLQRVDREEDAFRIFGQMPQN------G-CTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRD--------ISGRDDES 603 (767)
Q Consensus 539 ~~~~~~~~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~ 603 (767)
.++...|++++|...++++++. . .+....++..++.+|...|++++|...|+++++. .|....++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 8888889999999888888763 1 1223567777888888888999999888888866 44445566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHh-hh-------cCCCCCccchHHHHHHHhhcCCHHHHHH------HHHHHHHcCCCCC
Q 047305 604 MKSIEEFLQKGEVENAIQGLLEM-DF-------KLNDFQLAPYTIWLIGLCQDGQVKEALN------IFSVLVECKAIVT 669 (767)
Q Consensus 604 ~~l~~~~~~~g~~~~A~~~~~~~-~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~------~~~~~~~~~~~~~ 669 (767)
..++.+|...|++++|+..+.+. .. ...+.....+..++..+...+....+.. .++..... .+..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 251 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTV 251 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHHH
Confidence 77788888888888888877773 21 1234445555555555555444333332 22222111 1334
Q ss_pred hHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 670 PPSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 670 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
..++..++.+|...|++++|..+|+++++
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55677788888888888888888888764
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.7e-11 Score=118.25 Aligned_cols=190 Identities=8% Similarity=-0.054 Sum_probs=128.6
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-C-CCHhh
Q 047305 495 DIITYNSLINGFCKVGNINGALKLFKELQLKGLRPD----SVTYGTLINGLQRVDREEDAFRIFGQMPQNGC-T-PSPAV 568 (767)
Q Consensus 495 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~-~~~~~ 568 (767)
+...+..+...+.+.|++++|+..|+++.... |+ ...+..+..++...|++++|+..|+++++... . .....
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 45555666666777777777777777777652 32 34566666777777777777777777766421 1 12345
Q ss_pred HHHHHHHHHh--------cCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHH
Q 047305 569 YKSLMTWSCR--------RRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTI 640 (767)
Q Consensus 569 ~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~ 640 (767)
+..++.++.. .|++++|+..|+++++..|.++.+...+.......+. + ...+..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~----------~--------~~~~~~ 153 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAK----------L--------ARKQYE 153 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH----------H--------HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHH----------H--------HHHHHH
Confidence 5556666666 7777777777777777777666544333222111111 1 111578
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHcCCCC---ChHhHHHHHHHHHhc----------CChhHHHHHHHHHHHCCCCCCHHH
Q 047305 641 WLIGLCQDGQVKEALNIFSVLVECKAIV---TPPSCVKLIHGLCKR----------GYLDLAMDVFLYTLKNGFILRPRV 707 (767)
Q Consensus 641 l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~ 707 (767)
++.+|...|++++|+..|+++++.. |. .+.++..++.+|... |++++|+..|+++++.. |++..
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~ 230 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAY-PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF--PDSPL 230 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC--TTCTH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHC-CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC--CCChH
Confidence 8999999999999999999998875 44 356788999999877 88999999999998854 76643
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.38 E-value=6.5e-12 Score=116.04 Aligned_cols=135 Identities=10% Similarity=-0.024 Sum_probs=106.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcC
Q 047305 570 KSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDG 649 (767)
Q Consensus 570 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 649 (767)
..++.+|.+.|++++|+..|+++++..|.++.++..++.++...|++++|+..+.+... .+|+++.++..++.+|...|
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ-LEADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHHh
Confidence 34788889999999999999999999999999999999999999999999999988422 36999999999999987765
Q ss_pred C--HHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 047305 650 Q--VKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCN 709 (767)
Q Consensus 650 ~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 709 (767)
. .+.+...++++... +|....+...+.++...|++++|+..|+++++ +.|++....
T Consensus 137 ~~~~~~~~~~~~~~~~~--~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~ 194 (208)
T 3urz_A 137 EQEKKKLETDYKKLSSP--TKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQK 194 (208)
T ss_dssp HHHHHHHHHHHC---CC--CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCC--CchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHH
Confidence 4 45666777776532 33344566778888899999999999999986 457765433
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.37 E-value=3.7e-11 Score=112.68 Aligned_cols=186 Identities=11% Similarity=-0.079 Sum_probs=117.0
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC-hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-C-HhhHHH
Q 047305 496 IITYNSLINGFCKVGNINGALKLFKELQLKGLR-PD-SVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTP-S-PAVYKS 571 (767)
Q Consensus 496 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~-~~~~~~ 571 (767)
...+..+...+...|++++|+..|+++...... |. ...+..++.++.+.|++++|+..|+++++..... . ...+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 344555666677777888888888777765221 11 2356667777777777777877777777642111 1 113444
Q ss_pred HHHHHHh------------------cCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 047305 572 LMTWSCR------------------RRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDF 633 (767)
Q Consensus 572 l~~~~~~------------------~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~ 633 (767)
++.++.+ .|++++|+..|+++++..|+++.+........... ..+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~----------~~~~------ 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLK----------DRLA------ 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHH----------HHHH------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHH----------HHHH------
Confidence 4444433 45677777777777777777665543221111100 0010
Q ss_pred CccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCh---HhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047305 634 QLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTP---PSCVKLIHGLCKRGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 634 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 700 (767)
.....++..|.+.|++++|+..|+++++.. |.++ .++..++.+|.+.|++++|+..++.+...+
T Consensus 148 --~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 --KYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred --HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 113467788888888888888888888775 4443 567888888888888888888888887654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.36 E-value=2e-11 Score=117.76 Aligned_cols=176 Identities=10% Similarity=0.015 Sum_probs=119.6
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCC---ccchHHHHHHHHhcCCHHHHHHHHHHh-hhc-CCCCCccchH
Q 047305 565 SPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGR---DDESMKSIEEFLQKGEVENAIQGLLEM-DFK-LNDFQLAPYT 639 (767)
Q Consensus 565 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~p~~~~~~~ 639 (767)
+...+...+..+.+.|++++|+..|+++++..|.+ +.++..++.+|...|++++|+..+.+. ... .+|..+.++.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 44555555666666777777777777777776666 556666777777777777777776663 221 1223344566
Q ss_pred HHHHHHhh--------cCCHHHHHHHHHHHHHcCCCCChHhH-----------------HHHHHHHHhcCChhHHHHHHH
Q 047305 640 IWLIGLCQ--------DGQVKEALNIFSVLVECKAIVTPPSC-----------------VKLIHGLCKRGYLDLAMDVFL 694 (767)
Q Consensus 640 ~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~g~~~~A~~~~~ 694 (767)
.++.++.. .|++++|+..|+++++.. |.++... ..++.+|...|++++|+..|+
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 172 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYE 172 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 77777777 777777777777777765 5454444 678999999999999999999
Q ss_pred HHHHCCCCCCH----HHHHHHHHHHhhcC----------CccHHHHHHHHHHHHHcCCCCCCcchhh
Q 047305 695 YTLKNGFILRP----RVCNYLLRSLLFSK----------DNKKVHAYHLLCRMKSVGYDLDACLYPK 747 (767)
Q Consensus 695 ~~~~~~~~~~~----~~~~~l~~~l~~~~----------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 747 (767)
++++.. |++ ..+..+..++. .. |+ +++|...++++... .|+......
T Consensus 173 ~~l~~~--p~~~~~~~a~~~l~~~~~-~~g~~~~~~~~~~~-~~~A~~~~~~~~~~--~p~~~~~~~ 233 (261)
T 3qky_A 173 AVFDAY--PDTPWADDALVGAMRAYI-AYAEQSVRARQPER-YRRAVELYERLLQI--FPDSPLLRT 233 (261)
T ss_dssp HHHHHC--TTSTTHHHHHHHHHHHHH-HHHHTSCGGGHHHH-HHHHHHHHHHHHHH--CTTCTHHHH
T ss_pred HHHHHC--CCCchHHHHHHHHHHHHH-Hhcccchhhcccch-HHHHHHHHHHHHHH--CCCChHHHH
Confidence 999865 552 23333444443 33 66 89999999998875 577764443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.35 E-value=8.4e-12 Score=137.51 Aligned_cols=148 Identities=8% Similarity=-0.072 Sum_probs=68.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHh
Q 047305 533 TYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQ 612 (767)
Q Consensus 533 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 612 (767)
.+..+..++...|++++|+..++++++.+ +.+...+..++.+|...|++++|++.|+++++.+|.++.++..++.++.+
T Consensus 435 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~ 513 (681)
T 2pzi_A 435 LPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAEL 513 (681)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 34444444555555555555555544432 22344444444444455555555555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 047305 613 KGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRG 684 (767)
Q Consensus 613 ~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 684 (767)
.|++++ +..+.+.. ..+|.++.+|..++.+|.+.|++++|++.|+++++.+ |.+..++..++.++...|
T Consensus 514 ~g~~~~-~~~~~~al-~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 514 AGNTDE-HKFYQTVW-STNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTS-RHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HTCCCT-TCHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTS-TTHHHHHHHHHHHTC---
T ss_pred cCChHH-HHHHHHHH-HhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccC-cccHHHHHHHHHHHHccC
Confidence 555544 44444421 1234444445555555555555555555555554443 333444444444444433
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.31 E-value=1.6e-11 Score=120.17 Aligned_cols=227 Identities=9% Similarity=-0.073 Sum_probs=157.3
Q ss_pred HhcCCHHHHHHHHHHHHHC-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC------CC-CCCHhhHHHH
Q 047305 507 CKVGNINGALKLFKELQLK-------GLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQN------GC-TPSPAVYKSL 572 (767)
Q Consensus 507 ~~~g~~~~A~~~~~~~~~~-------~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~-~~~~~~~~~l 572 (767)
...|++++|+.++++.... .......++..+...+...|++++|+..++++++. +. +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777776652 11123457888999999999999999999998764 22 2245678888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhc--------cCCCccchHHHHHHHHhcCCHHHHHHHHHH-hhh------cCCCCCccc
Q 047305 573 MTWSCRRRKFSLAFSLWLQYLRD--------ISGRDDESMKSIEEFLQKGEVENAIQGLLE-MDF------KLNDFQLAP 637 (767)
Q Consensus 573 ~~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~------~~~p~~~~~ 637 (767)
+.+|...|++++|.+.|+++++. .|....++..++.+|...|++++|+..+.+ +.. ...|....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999999976 355566778899999999999999999988 332 114555667
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHcC--------CCCChHhHHHHHHHHHhcCChhHHHHHHHHHHH---C--CCCCC
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVECK--------AIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLK---N--GFILR 704 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~--~~~~~ 704 (767)
+..++.+|...|++++|+.+++++++.. .+.....+..++..+...+....+..+.+ +.. . ...|+
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGE-YGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHH-HHHHHHhcCCCCHH
Confidence 9999999999999999999999997641 13334456666666665555444443222 211 1 11133
Q ss_pred HHHHHHHHHHHhhcCCccHHHHHHHHHHHHH
Q 047305 705 PRVCNYLLRSLLFSKDNKKVHAYHLLCRMKS 735 (767)
Q Consensus 705 ~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~ 735 (767)
.......+..++...|+ +++|..++++..+
T Consensus 251 ~~~~~~~la~~~~~~g~-~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGK-LEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Confidence 23333334444448888 9999999998764
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.31 E-value=7.9e-12 Score=137.69 Aligned_cols=185 Identities=8% Similarity=-0.075 Sum_probs=144.7
Q ss_pred HhcCCHHHHHHHHHHHH--------HcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 047305 472 CTAGLIHKAYKILMQLA--------ESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQR 543 (767)
Q Consensus 472 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 543 (767)
...|++++|++.++++. +.. +.+...+..+..++...|++++|+..++++.+.+.. +...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 77899999999999887 432 335667888888899999999999999999876422 56678888888999
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHH
Q 047305 544 VDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGL 623 (767)
Q Consensus 544 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 623 (767)
.|++++|+..|+++++.. +.+...+..+..++.+.|++++ ++.|+++++.+|.++.++..++.++.+.|++++|+..+
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999998754 3456778888888999999999 99999999999999999999999999999999998888
Q ss_pred HHhhhcCCCCCccchHHHHHHHhhcCCHHHH-HHHHHHH
Q 047305 624 LEMDFKLNDFQLAPYTIWLIGLCQDGQVKEA-LNIFSVL 661 (767)
Q Consensus 624 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~ 661 (767)
.+.. ..+|.+..++..++.++...++.+++ .+-++++
T Consensus 558 ~~al-~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A 595 (681)
T 2pzi_A 558 DEVP-PTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDA 595 (681)
T ss_dssp HTSC-TTSTTHHHHHHHHHHHTC-------CCHHHHHHH
T ss_pred Hhhc-ccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHH
Confidence 8842 24688888899999998887774444 3344443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=6.3e-11 Score=116.08 Aligned_cols=191 Identities=9% Similarity=-0.123 Sum_probs=116.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC---CC--CHhhHHHHHH
Q 047305 505 GFCKVGNINGALKLFKELQLK----GLRPD-SVTYGTLINGLQRVDREEDAFRIFGQMPQNGC---TP--SPAVYKSLMT 574 (767)
Q Consensus 505 ~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~--~~~~~~~l~~ 574 (767)
.|...|++++|+..|++.... |-.++ ..+|+.+..+|...|++++|+..++++++... .+ ...++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456677777777777766543 21111 34667777777777777777777777665210 11 1346667777
Q ss_pred HHHhc-CChhHHHHHHHHHHhccCCC------ccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcc-------chHH
Q 047305 575 WSCRR-RKFSLAFSLWLQYLRDISGR------DDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLA-------PYTI 640 (767)
Q Consensus 575 ~~~~~-g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~-------~~~~ 640 (767)
+|... |++++|+..|+++++..|.. ..++..++.++...|++++|+..+.+... ..|.+.. .+..
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK-SSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTSSCTTTGGGHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHhcCCcccHHHHHHHHH
Confidence 77775 88888888888887766644 23455677777777777777777776321 1233322 3566
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHcCCCCChH-----hHHHHHHHHH--hcCChhHHHHHHHHHH
Q 047305 641 WLIGLCQDGQVKEALNIFSVLVECKAIVTPP-----SCVKLIHGLC--KRGYLDLAMDVFLYTL 697 (767)
Q Consensus 641 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~~~~--~~g~~~~A~~~~~~~~ 697 (767)
++.++...|++++|+..|+++++.. |.... .+..++.++. ..+++++|+..|++++
T Consensus 205 lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQEGQSED-PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGCC----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 7777777788888888887776654 22211 2333444443 3456777777776653
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.30 E-value=4.5e-11 Score=110.36 Aligned_cols=136 Identities=8% Similarity=-0.015 Sum_probs=107.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCC
Q 047305 536 TLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGE 615 (767)
Q Consensus 536 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 615 (767)
.+..++.+.|++++|+..|+++++.. +.+...+..++.++...|++++|+..|+++++..|+++.++..++.+|...|+
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH
Confidence 48889999999999999999999864 45688999999999999999999999999999999999999999999987765
Q ss_pred HH--HHHHHHHHhhhcCCCCC-ccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHH
Q 047305 616 VE--NAIQGLLEMDFKLNDFQ-LAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLI 677 (767)
Q Consensus 616 ~~--~A~~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 677 (767)
.+ .+...+.+.. .|.. ...+..++.++...|++++|+..|+++++.. |+......+.
T Consensus 138 ~~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~--P~~~~~~~l~ 197 (208)
T 3urz_A 138 QEKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF--PSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS--CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCHHHHHHHH
Confidence 44 3444433332 1221 2246778889999999999999999999875 5554444443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.30 E-value=4.6e-11 Score=117.07 Aligned_cols=229 Identities=11% Similarity=-0.050 Sum_probs=162.0
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc--C-CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 047305 479 KAYKILMQLAESGNLPDIITYNSLINGFCKV--G-NINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFG 555 (767)
Q Consensus 479 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~ 555 (767)
+|.+++++..+.- +++...| . +.+. + ++++|...|++. +..|...|++++|...|.
T Consensus 3 ~a~~~~~~a~k~~-~~~~~~~-~----~~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~ 61 (292)
T 1qqe_A 3 DPVELLKRAEKKG-VPSSGFM-K----LFSGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFL 61 (292)
T ss_dssp CHHHHHHHHHHHS-SCCCTHH-H----HHSCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHH
T ss_pred cHHHHHHHHHHHh-CcCCCcc-h----hcCCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHH
Confidence 4566677665552 2221112 2 2233 2 488898888876 446788999999999999
Q ss_pred HhhhC----CCCCC-HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCC------ccchHHHHHHHHhc-CCHHHHHHHH
Q 047305 556 QMPQN----GCTPS-PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGR------DDESMKSIEEFLQK-GEVENAIQGL 623 (767)
Q Consensus 556 ~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~-g~~~~A~~~~ 623 (767)
++.+. |-++. ..+|..++.+|.+.|++++|+..|+++++..|.. ..++..++.+|... |++++|+..+
T Consensus 62 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~ 141 (292)
T 1qqe_A 62 KAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCY 141 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 98763 31222 5688899999999999999999999999876654 34677899999996 9999999999
Q ss_pred HH-hhhcCCCCC------ccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChH-------hHHHHHHHHHhcCChhHH
Q 047305 624 LE-MDFKLNDFQ------LAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPP-------SCVKLIHGLCKRGYLDLA 689 (767)
Q Consensus 624 ~~-~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A 689 (767)
.+ +... |.. ..++..++.+|...|++++|+..|+++.+.. +.+.. ++..++.++...|++++|
T Consensus 142 ~~Al~~~--~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 218 (292)
T 1qqe_A 142 ELAGEWY--AQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS-MGNRLSQWSLKDYFLKKGLCQLAATDAVAA 218 (292)
T ss_dssp HHHHHHH--HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-SSCTTTGGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHH--HhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-hcCCcccHHHHHHHHHHHHHHHHcCCHHHH
Confidence 98 3322 211 3458899999999999999999999999876 33222 567889999999999999
Q ss_pred HHHHHHHHHCCCCCCHHH------HHHHHHHHhh-cCCccHHHHHHHHHHHH
Q 047305 690 MDVFLYTLKNGFILRPRV------CNYLLRSLLF-SKDNKKVHAYHLLCRMK 734 (767)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~------~~~l~~~l~~-~~~~~~~~a~~~~~~~~ 734 (767)
+..|+++++ +.|+... +..+...+-. ..++ +++|...++++.
T Consensus 219 ~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~-~~~A~~~~~~~~ 267 (292)
T 1qqe_A 219 ARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQ-LSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHGGGC--C---------HHHHHHHHHHHHTTCTTT-HHHHHHHHTTSS
T ss_pred HHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHH-HHHHHHHhccCC
Confidence 999999975 3355332 2223333321 3344 778887776643
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.29 E-value=3e-12 Score=110.04 Aligned_cols=130 Identities=8% Similarity=-0.029 Sum_probs=108.6
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHH
Q 047305 566 PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGL 645 (767)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~ 645 (767)
..+...+.+.+...+- ++++++..|.++.++..++..+.+.|++++|+..+.+... .+|.++.+|..++.+|
T Consensus 9 ~~~~~~l~~~~~~~~~-------l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~-~~P~~~~~~~~lg~~~ 80 (151)
T 3gyz_A 9 ESISTAVIDAINSGAT-------LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI-YDFYNVDYIMGLAAIY 80 (151)
T ss_dssp CHHHHHHHHHHHTSCC-------TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCC-------HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHH
Confidence 3445555555544444 4455677889999999999999999999999999988432 3699999999999999
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 047305 646 CQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPR 706 (767)
Q Consensus 646 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 706 (767)
...|++++|+..|+++++.+ |.++.++..++.+|...|++++|+..|+++++.. |++.
T Consensus 81 ~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~--~~~~ 138 (151)
T 3gyz_A 81 QIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS--NDEK 138 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCHH
Confidence 99999999999999999987 8889999999999999999999999999999855 7765
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.4e-09 Score=104.92 Aligned_cols=224 Identities=8% Similarity=-0.052 Sum_probs=177.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCChhhHHHHHHHH----Hhc
Q 047305 471 YCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVG--NINGALKLFKELQLKGLRPDSVTYGTLINGL----QRV 544 (767)
Q Consensus 471 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~----~~~ 544 (767)
.......++|+..++.++..++. +...|+.-..++...| ++++++.+++.+.....+ +..+|+.-...+ ...
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 43 MKAEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhc
Confidence 33444557899999999887533 6677888888888888 999999999999987544 555666655555 445
Q ss_pred ---CCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChh--HHHHHHHHHHhccCCCccchHHHHHHHHhcCC----
Q 047305 545 ---DREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFS--LAFSLWLQYLRDISGRDDESMKSIEEFLQKGE---- 615 (767)
Q Consensus 545 ---~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~---- 615 (767)
+++++++.+++++++.. +.+..+|..-.-++.+.|.++ ++++.++++++.+|.|..++...+.+....|.
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCH
T ss_pred cccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchh
Confidence 78899999999998854 556677776666777888888 99999999999999999999999888888877
Q ss_pred --HHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHH-HHHHHHHHHHcC--CCCChHhHHHHHHHHHhcCChhHHH
Q 047305 616 --VENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKE-ALNIFSVLVECK--AIVTPPSCVKLIHGLCKRGYLDLAM 690 (767)
Q Consensus 616 --~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 690 (767)
++++++.+.+.-. .+|.+.++|+.+..++.+.|+..+ +..+..++.+.+ -+.++.++..++++|.+.|+.++|+
T Consensus 200 ~~~~eEl~~~~~aI~-~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 200 NTIDEELNYVKDKIV-KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHH-HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhHHHHHHHHHHHHH-hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 8888888777322 369999999999999999888544 556777776542 2567888999999999999999999
Q ss_pred HHHHHHHH
Q 047305 691 DVFLYTLK 698 (767)
Q Consensus 691 ~~~~~~~~ 698 (767)
++++.+.+
T Consensus 279 ~~~~~l~~ 286 (306)
T 3dra_A 279 TVYDLLKS 286 (306)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999875
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.27 E-value=2.3e-10 Score=107.24 Aligned_cols=184 Identities=10% Similarity=-0.039 Sum_probs=125.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-C-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCcc---chHH
Q 047305 531 SVTYGTLINGLQRVDREEDAFRIFGQMPQNGCT-P-SPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDD---ESMK 605 (767)
Q Consensus 531 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~~ 605 (767)
...+..++..+...|++++|+..|+++++.... + ....+..++.+|.+.|++++|+..|+++++..|.++. ++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 445566677788888999999999888874321 1 1356777788888889999999999998888888875 5566
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhH------------
Q 047305 606 SIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSC------------ 673 (767)
Q Consensus 606 l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~------------ 673 (767)
++.++...|.. ....+..++..+...|++++|+..|+++++.. |.++.++
T Consensus 84 ~g~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~~~~~~ 145 (225)
T 2yhc_A 84 RGLTNMALDDS-----------------ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLVFLKDR 145 (225)
T ss_dssp HHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhh-----------------hhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHHHHHHH
Confidence 67776654321 01113344455555677777777777777765 4444333
Q ss_pred -----HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhhcCCccHHHHHHHHHHHHHc
Q 047305 674 -----VKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPR----VCNYLLRSLLFSKDNKKVHAYHLLCRMKSV 736 (767)
Q Consensus 674 -----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~l~~~~~~~~~~a~~~~~~~~~~ 736 (767)
..++..|.+.|++++|+..|+++++.. |+.+ .+..+..++. ..|+ +++|...++++...
T Consensus 146 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~-~~g~-~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 146 LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYR-QMQM-NAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHH-HTTC-HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHH-HcCC-cHHHHHHHHHHHhh
Confidence 467889999999999999999999865 5543 3444555555 8888 99999999998875
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.27 E-value=9.8e-11 Score=99.61 Aligned_cols=131 Identities=13% Similarity=0.133 Sum_probs=103.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhh
Q 047305 568 VYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQ 647 (767)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 647 (767)
.+..++..+...|++++|..+++++++..|.+...+..++..+...|++++|+..+.+... ..|.++..+..++.++..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE-LDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHH-HCCCchHHHHHHHHHHHH
Confidence 4556667777778888888888888877777777777778888888888888777777432 246667778888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047305 648 DGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 648 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 700 (767)
.|++++|+..++++.+.. +.++.++..++.++...|++++|...++++++..
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 889999999888888776 6677888888888888999999999888887643
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=5.3e-11 Score=116.06 Aligned_cols=131 Identities=11% Similarity=0.052 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHh
Q 047305 567 AVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLC 646 (767)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~ 646 (767)
..+..+...+.+.|++++|...|+++++..|.++.++..++.++.+.|++++|+..+.++.. ..|+........+..+.
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~-~~p~~~~~~~~~~~~l~ 196 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL-QDQDTRYQGLVAQIELL 196 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG-GGCSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch-hhcchHHHHHHHHHHHH
Confidence 33444444445555555555555555555555555555555555555555555555444211 12333322333333344
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047305 647 QDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 647 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 699 (767)
..++.++|+..++++++.+ |.++..+..++.+|...|++++|+..|+++++.
T Consensus 197 ~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 197 XQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp HHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 4455555555555555544 445555555555555555555555555555543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.25 E-value=4.8e-11 Score=106.92 Aligned_cols=161 Identities=11% Similarity=0.024 Sum_probs=82.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHH-Hh
Q 047305 534 YGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEF-LQ 612 (767)
Q Consensus 534 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~ 612 (767)
+......+...|++++|...++++++.. +.+...+..+..++.+.|++++|+..|+++++..| ++......+... ..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHh
Confidence 3344445555555666665555555432 22344555555555555666666666555555555 443322222121 11
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCC-ChHhHHHHHHHHHhcCChhHHHH
Q 047305 613 KGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIV-TPPSCVKLIHGLCKRGYLDLAMD 691 (767)
Q Consensus 613 ~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~ 691 (767)
.++..+|+..+.+.. ...|+++.++..++.++...|++++|+..|+++++.++.+ ++..+..++.++...|+.++|..
T Consensus 87 ~~~~~~a~~~~~~al-~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 87 QAAESPELKRLEQEL-AANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHTSCHHHHHHHHHH-HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hcccchHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 111222344444421 1235555666666666666666666666666666554211 23455666666666666666666
Q ss_pred HHHHHH
Q 047305 692 VFLYTL 697 (767)
Q Consensus 692 ~~~~~~ 697 (767)
.|++++
T Consensus 166 ~y~~al 171 (176)
T 2r5s_A 166 KYRRQL 171 (176)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1e-10 Score=114.00 Aligned_cols=168 Identities=14% Similarity=0.012 Sum_probs=144.1
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHH
Q 047305 528 RPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSI 607 (767)
Q Consensus 528 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 607 (767)
+.+...+..+...+...|++++|...|+++++.. +.+...+..++.++.+.|++++|...++++++..|+........+
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 3345567788889999999999999999998864 456788889999999999999999999999999996555555666
Q ss_pred HHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC--hHhHHHHHHHHHhcCC
Q 047305 608 EEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVT--PPSCVKLIHGLCKRGY 685 (767)
Q Consensus 608 ~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~ 685 (767)
..+...++.++|+..+.+... ..|+++.++..++.+|...|++++|+..|+++++.+ |.+ ..++..++.+|...|+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~-~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVA-ENPEDAALATQLALQLHQVGRNEEALELLFGHLRXD-LTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHhhcccCccHHHHHHHHh-cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHcCC
Confidence 667788888889888887322 359999999999999999999999999999999887 544 7789999999999999
Q ss_pred hhHHHHHHHHHHH
Q 047305 686 LDLAMDVFLYTLK 698 (767)
Q Consensus 686 ~~~A~~~~~~~~~ 698 (767)
.++|...|++.+.
T Consensus 271 ~~~a~~~~r~al~ 283 (287)
T 3qou_A 271 GDALASXYRRQLY 283 (287)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 9999999998864
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.24 E-value=5.6e-11 Score=106.47 Aligned_cols=161 Identities=11% Similarity=0.019 Sum_probs=128.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHH-h
Q 047305 568 VYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGL-C 646 (767)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~-~ 646 (767)
.+...+..+.+.|++++|+..|+++++..|.++.++..++.++...|++++|+..+.+... ..| ++..+..++... .
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~-~~p-~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL-EYQ-DNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG-GGC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh-ccC-ChHHHHHHHHHHHH
Confidence 4556677788999999999999999999999999999999999999999999999988432 246 665444444332 2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhhcCCccH
Q 047305 647 QDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRP---RVCNYLLRSLLFSKDNKK 723 (767)
Q Consensus 647 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~l~~~~~~~~ 723 (767)
..+...+|+..++++++.+ |.++..+..++.++...|++++|+..|+++++.. |++ ..+..+...+. ..|+ .
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~a~~~l~~~~~-~~g~-~ 160 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVN--LGAQDGEVKKTFMDILS-ALGQ-G 160 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTTTTTHHHHHHHHHHH-HHCS-S
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--cccChHHHHHHHHHHHH-HhCC-C
Confidence 3344456899999999987 8889999999999999999999999999998765 543 34444555554 7787 8
Q ss_pred HHHHHHHHHHHH
Q 047305 724 VHAYHLLCRMKS 735 (767)
Q Consensus 724 ~~a~~~~~~~~~ 735 (767)
++|...+++...
T Consensus 161 ~~A~~~y~~al~ 172 (176)
T 2r5s_A 161 NAIASKYRRQLY 172 (176)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 999999988654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.7e-09 Score=104.41 Aligned_cols=233 Identities=4% Similarity=-0.100 Sum_probs=184.2
Q ss_pred CCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 047305 427 GELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAG--LIHKAYKILMQLAESGNLPDIITYNSLIN 504 (767)
Q Consensus 427 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 504 (767)
...++|+.++.++. ...+.+..+|+.....+...| +++++++.++.+...++. +..+|+.-..
T Consensus 47 e~s~~aL~~t~~~L--------------~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~ 111 (306)
T 3dra_A 47 EYSERALHITELGI--------------NELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQL 111 (306)
T ss_dssp CCSHHHHHHHHHHH--------------HHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHH
T ss_pred CCCHHHHHHHHHHH--------------HHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHH
Confidence 34468888888875 234456677888888888888 999999999999987543 6667776555
Q ss_pred HH----Hhc---CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH--HHHHHHHHhhhCCCCCCHhhHHHHHHH
Q 047305 505 GF----CKV---GNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREE--DAFRIFGQMPQNGCTPSPAVYKSLMTW 575 (767)
Q Consensus 505 ~~----~~~---g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~ 575 (767)
.+ ... +++++++.+++.+.+...+ +..+|..-..++.+.|.++ +++++++++++.+ +-+-..|..-..+
T Consensus 112 iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~l 189 (306)
T 3dra_A 112 IIGQIMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFL 189 (306)
T ss_dssp HHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 55 555 7899999999999988644 7788888888888889888 9999999999865 4466677666666
Q ss_pred HHhcCC------hhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHH-hhh--cCCCCCccchHHHHHHHh
Q 047305 576 SCRRRK------FSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLE-MDF--KLNDFQLAPYTIWLIGLC 646 (767)
Q Consensus 576 ~~~~g~------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~--~~~p~~~~~~~~l~~~~~ 646 (767)
+.+.++ ++++++.+++++..+|.+..+++.+..++.+.|+..+++..+.. ... ...|.++.++..++.+|.
T Consensus 190 l~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~ 269 (306)
T 3dra_A 190 LFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYT 269 (306)
T ss_dssp HHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHH
T ss_pred HHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHH
Confidence 667776 99999999999999999999999999999999986665554444 221 123777888999999999
Q ss_pred hcCCHHHHHHHHHHHHH-cCCCCChHhHHHHH
Q 047305 647 QDGQVKEALNIFSVLVE-CKAIVTPPSCVKLI 677 (767)
Q Consensus 647 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~ 677 (767)
+.|+.++|+++++.+.+ .+ |.....|...+
T Consensus 270 ~~~~~~~A~~~~~~l~~~~D-pir~~yW~~~~ 300 (306)
T 3dra_A 270 QQKKYNESRTVYDLLKSKYN-PIRSNFWDYQI 300 (306)
T ss_dssp HTTCHHHHHHHHHHHHHTTC-GGGHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHhccC-hHHHHHHHHHH
Confidence 99999999999999986 56 66666666544
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=7.5e-11 Score=127.96 Aligned_cols=152 Identities=9% Similarity=-0.095 Sum_probs=69.6
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHH
Q 047305 545 DREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLL 624 (767)
Q Consensus 545 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 624 (767)
|++++|...++++.+.. +.+...+..++..+.+.|++++|.+.|+++++..|.+..++..++.+|...|++++|++.+.
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44455555555544421 22344444555555555555555555555555555555555555555555555555555555
Q ss_pred HhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc---CChhHHHHHHHHHHHC
Q 047305 625 EMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKR---GYLDLAMDVFLYTLKN 699 (767)
Q Consensus 625 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 699 (767)
+... ..|+++.++..++.+|...|++++|++.++++++.+ |.++.++..++.++... |++++|.+.++++++.
T Consensus 82 ~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 82 QASD-AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHh-cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 4211 134455555555555555555555555555555544 44455555555555555 5555555555555543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.1e-10 Score=97.36 Aligned_cols=108 Identities=7% Similarity=-0.051 Sum_probs=53.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhh
Q 047305 568 VYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQ 647 (767)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 647 (767)
.+...+..|.+.|++++|++.|+++++..|.++.++..++.+|...|++++|+..+.+.. ..+|.++.+|..+|.+|..
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCI-RLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHH-HhhhhhhHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555555555555555544444421 1234444445555555555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChHhHHHHH
Q 047305 648 DGQVKEALNIFSVLVECKAIVTPPSCVKLI 677 (767)
Q Consensus 648 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 677 (767)
.|++++|++.|+++++.+ |.++.++..++
T Consensus 94 ~~~~~~A~~~~~~al~l~-P~~~~a~~~l~ 122 (126)
T 4gco_A 94 MREWSKAQRAYEDALQVD-PSNEEAREGVR 122 (126)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHC-cCCHHHHHHHH
Confidence 555555555555555444 44444444433
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.21 E-value=2.3e-09 Score=101.98 Aligned_cols=182 Identities=10% Similarity=-0.006 Sum_probs=83.8
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 047305 480 AYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRP-DSVTYGTLINGLQRVDREEDAFRIFGQMP 558 (767)
Q Consensus 480 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 558 (767)
|+..|++..+.+ .++..++..+..++...|++++|++++.+.+..+..+ +...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444444444332 2233334455555556666666666666554443211 23344455555666666666666666665
Q ss_pred hCCCCC-----CHhhHHHHHHH--HHh--cCChhHHHHHHHHHHhccCC--CccchHHHHHHHHhcCCHHHHHHHHHHhh
Q 047305 559 QNGCTP-----SPAVYKSLMTW--SCR--RRKFSLAFSLWLQYLRDISG--RDDESMKSIEEFLQKGEVENAIQGLLEMD 627 (767)
Q Consensus 559 ~~~~~~-----~~~~~~~l~~~--~~~--~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 627 (767)
+. .| +..+...++.+ ... .+++.+|..+|+++.+..|+ .+..+++ ++.+.|++++|.+.+..+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHH
Confidence 42 33 12232333322 111 22566666666665554443 1111111 4455555555544444321
Q ss_pred hcC---------CCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCh
Q 047305 628 FKL---------NDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTP 670 (767)
Q Consensus 628 ~~~---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 670 (767)
... +|+++.++.+++......|+ +|.++++++.+.. |.+|
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~-P~hp 287 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD-HEHA 287 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT-CCCH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC-CCCh
Confidence 110 24555545444444444454 5555555555554 4444
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.20 E-value=8.5e-11 Score=98.03 Aligned_cols=117 Identities=13% Similarity=0.012 Sum_probs=100.8
Q ss_pred HhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHh
Q 047305 593 LRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPS 672 (767)
Q Consensus 593 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 672 (767)
...+|.....+...|..|.+.|++++|++.+.+.. ..+|.++.+|..++.+|.+.|++++|+..++++++.+ |.++.+
T Consensus 6 a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a 83 (126)
T 4gco_A 6 AYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAV-KRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKG 83 (126)
T ss_dssp -CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHH
Confidence 44677777888899999999999999999999832 2369999999999999999999999999999999998 888999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047305 673 CVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLR 713 (767)
Q Consensus 673 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 713 (767)
+..++.+|...|++++|+..|+++++.. |+.......+.
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~--P~~~~a~~~l~ 122 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQVD--PSNEEAREGVR 122 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHC--cCCHHHHHHHH
Confidence 9999999999999999999999999854 77665444333
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.19 E-value=8e-10 Score=102.16 Aligned_cols=174 Identities=10% Similarity=-0.022 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcC----ChhHHHHHH
Q 047305 514 GALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRR----KFSLAFSLW 589 (767)
Q Consensus 514 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~ 589 (767)
+|+..|++..+.| +...+..+...|...+++++|+..|++..+.| ++..+..+..+|.. + ++++|..+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3455555555542 44455555555555566666666666655533 34444445555544 4 555565555
Q ss_pred HHHHhccCCCccchHHHHHHHHh----cCCHHHHHHHHHHhhhcCCC--CCccchHHHHHHHhh----cCCHHHHHHHHH
Q 047305 590 LQYLRDISGRDDESMKSIEEFLQ----KGEVENAIQGLLEMDFKLND--FQLAPYTIWLIGLCQ----DGQVKEALNIFS 659 (767)
Q Consensus 590 ~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~p--~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 659 (767)
+++.+ +.++.+...++..|.. .+++++|+..+.+.... .| .++.++..|+.+|.. .+++++|+.+|+
T Consensus 77 ~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 55543 2444555555555554 45555555555553211 12 113445555555555 445555555555
Q ss_pred HHHHcCCCCChHhHHHHHHHHHhc-C-----ChhHHHHHHHHHHHC
Q 047305 660 VLVECKAIVTPPSCVKLIHGLCKR-G-----YLDLAMDVFLYTLKN 699 (767)
Q Consensus 660 ~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~ 699 (767)
++.+. +.++.++..|+.+|... | ++++|+..|+++.+.
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 55544 23334455555555432 2 455555555555443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.18 E-value=1.1e-08 Score=97.41 Aligned_cols=187 Identities=13% Similarity=-0.014 Sum_probs=83.1
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCC
Q 047305 397 AQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGL 476 (767)
Q Consensus 397 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 476 (767)
|+..|++....+ .++..++..+..++...|++++|++++.+.... .....+...+...+..+.+.|+
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~------------~~~~~~lea~~l~vqi~L~~~r 151 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDN------------DEAEGTTELLLLAIEVALLNNN 151 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS------------SCSTTHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhcc------------CCCcCcHHHHHHHHHHHHHCCC
Confidence 555565555443 234444455566666666666666666654200 0001334444445555555555
Q ss_pred HHHHHHHHHHHHHcCCCC-----CHhhHHHHHHH--HHhcC--CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 047305 477 IHKAYKILMQLAESGNLP-----DIITYNSLING--FCKVG--NINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDRE 547 (767)
Q Consensus 477 ~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 547 (767)
.+.|.+.+++|.+. .| +..+...++.+ ....| ++++|..+|+++... .|+..+...++.++.+.|++
T Consensus 152 ~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~ 227 (310)
T 3mv2_B 152 VSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNI 227 (310)
T ss_dssp HHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCH
Confidence 55555555555443 22 12222333333 22222 455555555555433 23322222233345555555
Q ss_pred HHHHHHHHHhhhCC---------CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccc
Q 047305 548 EDAFRIFGQMPQNG---------CTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDE 602 (767)
Q Consensus 548 ~~A~~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 602 (767)
++|...++.+.+.. -+.++.++..++.+....|+ +|.+++.++.+..|+++.+
T Consensus 228 ~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 228 AEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 55555555433210 02233344333333333443 4455555555555554443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=5.9e-11 Score=102.36 Aligned_cols=112 Identities=14% Similarity=-0.013 Sum_probs=91.6
Q ss_pred HHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCC
Q 047305 587 SLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKA 666 (767)
Q Consensus 587 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 666 (767)
..|+++++..|.+...+..++..+...|++++|+..+.+... ..|.++.+|..++.+|...|++++|+..|+++++.+
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~- 85 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV-LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD- 85 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH-cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence 346677777888888888888888888888888888877422 358888888888888888899999999999988887
Q ss_pred CCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047305 667 IVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 667 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 700 (767)
|.++.++..++.+|...|++++|+..|+++++..
T Consensus 86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 7788888888889999999999999998887743
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=3.7e-10 Score=122.45 Aligned_cols=153 Identities=10% Similarity=-0.103 Sum_probs=116.7
Q ss_pred cCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHH
Q 047305 579 RRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIF 658 (767)
Q Consensus 579 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 658 (767)
.|++++|.+.|+++++..|.+..++..++..+...|++++|++.+.+.. ...|+++.++..++.+|...|++++|++.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGL-ALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-TTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4789999999999999999999999999999999999999999998843 246899999999999999999999999999
Q ss_pred HHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhhcC---CccHHHHHHHHHHHH
Q 047305 659 SVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRV-CNYLLRSLLFSK---DNKKVHAYHLLCRMK 734 (767)
Q Consensus 659 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~---~~~~~~a~~~~~~~~ 734 (767)
+++++.+ |.++.++..++.+|...|++++|.+.|+++++.. |+... +..+...+. .. |+ +++|...+++..
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~-~~~~~g~-~~~A~~~~~~al 155 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRR-RLCDWRA-LDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH-HTTCCTT-HHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH-Hhhcccc-HHHHHHHHHHHH
Confidence 9999987 7889999999999999999999999999999864 66544 444444444 66 77 999999999988
Q ss_pred HcC
Q 047305 735 SVG 737 (767)
Q Consensus 735 ~~~ 737 (767)
+.+
T Consensus 156 ~~~ 158 (568)
T 2vsy_A 156 AQG 158 (568)
T ss_dssp HHT
T ss_pred hcC
Confidence 654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.8e-09 Score=99.78 Aligned_cols=175 Identities=15% Similarity=0.005 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC----CHHHHHHHH
Q 047305 479 KAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVD----REEDAFRIF 554 (767)
Q Consensus 479 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~----~~~~A~~~~ 554 (767)
+|...|++..+.| +...+..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|..+|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4677788887763 67788888999999999999999999998875 56777788888877 6 899999999
Q ss_pred HHhhhCCCCCCHhhHHHHHHHHHh----cCChhHHHHHHHHHHhccCC--CccchHHHHHHHHh----cCCHHHHHHHHH
Q 047305 555 GQMPQNGCTPSPAVYKSLMTWSCR----RRKFSLAFSLWLQYLRDISG--RDDESMKSIEEFLQ----KGEVENAIQGLL 624 (767)
Q Consensus 555 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~----~g~~~~A~~~~~ 624 (767)
++..+.| ++..+..+..+|.. .+++++|+.+|+++.+..|. .+.++..++..|.. .+++++|+..+.
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 9998754 66777888888877 88999999999999988773 48899999999998 889999999999
Q ss_pred HhhhcCCCCCccchHHHHHHHhhc-C-----CHHHHHHHHHHHHHcC
Q 047305 625 EMDFKLNDFQLAPYTIWLIGLCQD-G-----QVKEALNIFSVLVECK 665 (767)
Q Consensus 625 ~~~~~~~p~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 665 (767)
+.... |.++.++..|+.+|... | ++++|+.+|+++.+.|
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 85433 55666799999999865 3 8999999999999887
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.13 E-value=1.2e-09 Score=92.74 Aligned_cols=131 Identities=11% Similarity=0.119 Sum_probs=95.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHh
Q 047305 533 TYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQ 612 (767)
Q Consensus 533 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 612 (767)
.+..++..+...|++++|..+++++.+.+ +.+...+..++..+...|++++|...++++++..|.++..+..++..+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 34556666777777777777777776543 33556666677777777788888888877777777777777777778888
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 047305 613 KGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECK 665 (767)
Q Consensus 613 ~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 665 (767)
.|++++|+..+.+... ..|.++..+..++.++...|++++|...++++.+.+
T Consensus 82 ~~~~~~A~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALE-LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 8888888777777432 246666678888888888888888888888887664
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.4e-10 Score=99.66 Aligned_cols=100 Identities=10% Similarity=-0.148 Sum_probs=91.7
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHH
Q 047305 565 SPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIG 644 (767)
Q Consensus 565 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~ 644 (767)
+...+..++..+.+.|++++|+..|+++++.+|.++..+..++.+|...|++++|+..+.+... .+|+++.+|..++.+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~-l~P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA-LGKNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh-hCCCCcHHHHHHHHH
Confidence 4557778888899999999999999999999999999999999999999999999999998422 359999999999999
Q ss_pred HhhcCCHHHHHHHHHHHHHcC
Q 047305 645 LCQDGQVKEALNIFSVLVECK 665 (767)
Q Consensus 645 ~~~~g~~~~A~~~~~~~~~~~ 665 (767)
|...|++++|+..|+++++..
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999886
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.11 E-value=5e-10 Score=108.65 Aligned_cols=195 Identities=9% Similarity=-0.070 Sum_probs=123.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHH
Q 047305 531 SVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEF 610 (767)
Q Consensus 531 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 610 (767)
...+..+...+...|++++|+..|+++++.. +.+...+..++.+|.+.|++++|+..++++++..|.+..+++.++.+|
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4456666777777777777777777777642 335667777777777788888888888888887888777777888888
Q ss_pred HhcCCHHHHHHHHHH-hhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHH
Q 047305 611 LQKGEVENAIQGLLE-MDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLA 689 (767)
Q Consensus 611 ~~~g~~~~A~~~~~~-~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 689 (767)
...|++++|+..+.+ +.. .|+++..+...++...+ ..++..... ......+.++.+...++..+ .|++++|
T Consensus 83 ~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~i~~~l~~l~--~~~~~~A 154 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSL--AKEQRLNFGDDIPSALR---IAKKKRWNS-IEERRIHQESELHSYLTRLI--AAERERE 154 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHHH---HHHHHHHHH-HHHTCCCCCCHHHHHHHHHH--HHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHH---HHHHHHHHH-HHHHHHhhhHHHHHHHHHHH--HHHHHHH
Confidence 888888888777776 322 24443333333333332 222222222 22233466666666665543 6788888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHc
Q 047305 690 MDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCRMKSV 736 (767)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~~ 736 (767)
++.++++++ ..|+......-+..+..+.++.+++|..+|++..+.
T Consensus 155 ~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 888888765 346665555544444434433377888888876643
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.10 E-value=4.7e-10 Score=100.65 Aligned_cols=132 Identities=8% Similarity=0.006 Sum_probs=107.6
Q ss_pred HhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHH-HhhcCCH--HH
Q 047305 577 CRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIG-LCQDGQV--KE 653 (767)
Q Consensus 577 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~--~~ 653 (767)
...|++++|+..++++++..|.++.++..++.+|...|++++|+..+.+... ..|.++.++..++.+ |...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQ-LRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 4578899999999999999999999999999999999999999988888322 247888889999999 7788998 99
Q ss_pred HHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047305 654 ALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLL 712 (767)
Q Consensus 654 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 712 (767)
|+..++++++.+ |.++.++..++.+|...|++++|...|+++++.. |+......++
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~ 155 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN--SPRINRTQLV 155 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--CTTSCHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC--CCCccHHHHH
Confidence 999999999887 7788899999999999999999999999998854 6554333333
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.09 E-value=5.3e-10 Score=108.51 Aligned_cols=195 Identities=8% Similarity=-0.099 Sum_probs=148.7
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHH
Q 047305 495 DIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMT 574 (767)
Q Consensus 495 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 574 (767)
+...+..+...+...|++++|+..|++....... +...+..+..++...|++++|+..++++++.. +.+...+..++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4566777888899999999999999999887322 66788889999999999999999999998753 456778888999
Q ss_pred HHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHH
Q 047305 575 WSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEA 654 (767)
Q Consensus 575 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 654 (767)
+|...|++++|...|+++++..|+++..+...+....+..+.... ........|.++.+...++..+ .|++++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRW----NSIEERRIHQESELHSYLTRLI--AAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHH----HHHHHTCCCCCCHHHHHHHHHH--HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHH----HHHHHHHHhhhHHHHHHHHHHH--HHHHHHH
Confidence 999999999999999999999998876665444444433222222 1222233466666566665543 7999999
Q ss_pred HHHHHHHHHcCCCCChHhHHHHHHHHHhc-CChhHHHHHHHHHHH
Q 047305 655 LNIFSVLVECKAIVTPPSCVKLIHGLCKR-GYLDLAMDVFLYTLK 698 (767)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 698 (767)
++.++++++.+ |.+......+...+.+. +.+++|.++|+++.+
T Consensus 155 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEGH-EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTTT-SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999886 66666666677666665 778999999998865
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.5e-09 Score=101.93 Aligned_cols=193 Identities=11% Similarity=-0.051 Sum_probs=134.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHH-------HHHHHhcCCHHHHHHHHHHhhh------------CCCC-----
Q 047305 508 KVGNINGALKLFKELQLKGLRPDSVTYGTL-------INGLQRVDREEDAFRIFGQMPQ------------NGCT----- 563 (767)
Q Consensus 508 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~------------~~~~----- 563 (767)
..++...|.+.|.++...... ....|+.+ ..++...++..+++..+...++ .|+-
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 456677777777777665322 23455555 3444444444455555544443 1100
Q ss_pred ---CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-ccchH
Q 047305 564 ---PSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQ-LAPYT 639 (767)
Q Consensus 564 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~-~~~~~ 639 (767)
........+...+...|++++|.+.|+.++...|.+. ..+.++..+.+.|++++|+..+.+.....+|.. ..++.
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~ 175 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGV 175 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHH
Confidence 0123444566678888999999999988888888777 788888899999999999888876432212211 23688
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHcCCCC--ChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 047305 640 IWLIGLCQDGQVKEALNIFSVLVECKAIV--TPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILR 704 (767)
Q Consensus 640 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 704 (767)
.++.++...|++++|+..|+++......| .+......+.++.+.|+.++|...|+++.... |+
T Consensus 176 ~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~ 240 (282)
T 4f3v_A 176 AHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PE 240 (282)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc
Confidence 99999999999999999999998543213 45578889999999999999999999998754 65
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.5e-09 Score=107.15 Aligned_cols=198 Identities=8% Similarity=-0.061 Sum_probs=135.2
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 047305 473 TAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFR 552 (767)
Q Consensus 473 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~ 552 (767)
..|++++|.+++++..+.... . + +...+++++|...|.++ +..|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 356778888888877654211 1 0 11146777777776654 345677788888888
Q ss_pred HHHHhhhC----CCC-CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCC------ccchHHHHHHHHhcCCHHHHHH
Q 047305 553 IFGQMPQN----GCT-PSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGR------DDESMKSIEEFLQKGEVENAIQ 621 (767)
Q Consensus 553 ~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~ 621 (767)
.+.++.+. +-. ....+|..+..+|.+.|++++|+..|+++++..+.. ..++..++.+|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 88877652 111 114467777778888888888888888888654322 2355677888887 88888888
Q ss_pred HHHH-hhhcCCC----CCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC------hHhHHHHHHHHHhcCChhHHH
Q 047305 622 GLLE-MDFKLND----FQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVT------PPSCVKLIHGLCKRGYLDLAM 690 (767)
Q Consensus 622 ~~~~-~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~ 690 (767)
.+.+ +...... ....++..++.+|...|++++|+..|+++++.. +.+ ..++..++.++...|++++|+
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMY-KEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 8877 3221101 113468888999999999999999999987642 111 235667778888889999999
Q ss_pred HHHHHHH
Q 047305 691 DVFLYTL 697 (767)
Q Consensus 691 ~~~~~~~ 697 (767)
..|++++
T Consensus 216 ~~~~~al 222 (307)
T 2ifu_A 216 KCVRESY 222 (307)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9999987
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.07 E-value=2e-09 Score=95.21 Aligned_cols=129 Identities=12% Similarity=0.007 Sum_probs=85.1
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHh
Q 047305 567 AVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLC 646 (767)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~ 646 (767)
..+..++..+...|++++|...|+++++..|.+..++..++.++...|++++|+..+.+... ..|.++.++..++.++.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE-LDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCcccHHHHHHHHHHHH
Confidence 34555666677777777777777777777777777777777777777777777666666321 24666666777777777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChHhHHHHHH--HHHhcCChhHHHHHHHHHH
Q 047305 647 QDGQVKEALNIFSVLVECKAIVTPPSCVKLIH--GLCKRGYLDLAMDVFLYTL 697 (767)
Q Consensus 647 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~ 697 (767)
..|++++|+..++++++.+ |.++..+..++. .+...|++++|+..+++..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 7777777777777777665 555555533333 3666677777777666553
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.07 E-value=3e-10 Score=97.39 Aligned_cols=110 Identities=14% Similarity=-0.038 Sum_probs=78.0
Q ss_pred HHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCC
Q 047305 588 LWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAI 667 (767)
Q Consensus 588 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 667 (767)
.|+++++..|.+...+..++..+...|++++|+..+.+... .+|.++.+|..++.+|...|++++|+..|+++++.+ |
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p 83 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCM-LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-I 83 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH-hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-C
Confidence 44555666666666667777777777777777777766322 247777777777777777788888888888877776 6
Q ss_pred CChHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047305 668 VTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 668 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 699 (767)
.++.++..++.+|...|++++|+..|+++++.
T Consensus 84 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 84 NEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 67777777788888888888888888777764
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=3.6e-10 Score=97.37 Aligned_cols=117 Identities=11% Similarity=-0.098 Sum_probs=97.4
Q ss_pred HHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCC
Q 047305 553 IFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLND 632 (767)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p 632 (767)
.++++++.. +.+...+..++..+.+.|++++|+..|+++++..|.++.++..++.++...|++++|+..+.+... ..|
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-l~p 86 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV-MDI 86 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HST
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cCC
Confidence 455555432 234556777888899999999999999999999999999999999999999999999999988422 358
Q ss_pred CCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHh
Q 047305 633 FQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPS 672 (767)
Q Consensus 633 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 672 (767)
+++.++..++.+|...|++++|+..|+++++.. |.++..
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 125 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELI-ANXPEF 125 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCGGG
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCCcc
Confidence 999999999999999999999999999998875 445544
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.06 E-value=8.9e-08 Score=100.35 Aligned_cols=101 Identities=10% Similarity=0.024 Sum_probs=59.5
Q ss_pred HhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC-HHHHHHHHH
Q 047305 219 ADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKR-YDEAYAWYR 297 (767)
Q Consensus 219 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~A~~~~~ 297 (767)
.+.|..+|+.+... -|. |+++.+..+|++.+.. .|+...|...+....+.++ .+....+|+
T Consensus 11 i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe 72 (493)
T 2uy1_A 11 LSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYE 72 (493)
T ss_dssp -CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHH
T ss_pred hHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 56666666666543 222 7788888888887764 3577777777766665553 345566666
Q ss_pred HHHHC-CCCC-CHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHC
Q 047305 298 KMFEE-KIEP-DVVLYGVMIRGLS----EAGKVKDAMKLLSDMRER 337 (767)
Q Consensus 298 ~~~~~-~~~~-~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~ 337 (767)
..+.. |..| +...|...+..+. .+++.+.+..+|+.....
T Consensus 73 ~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~ 118 (493)
T 2uy1_A 73 FTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT 118 (493)
T ss_dssp HHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC
Confidence 66543 3222 5566666665543 235566777777777763
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1.4e-08 Score=99.43 Aligned_cols=162 Identities=10% Similarity=0.030 Sum_probs=110.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCC-CCCCH----hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCcc------chHH
Q 047305 537 LINGLQRVDREEDAFRIFGQMPQNG-CTPSP----AVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDD------ESMK 605 (767)
Q Consensus 537 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~ 605 (767)
.+..+...|++++|..++++..+.. ..|+. ..+..+...+...|++++|+..|+++++..+.... ++..
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566777888888888888877632 12221 12334566666777888888888888875444333 4667
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhh------cCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCC----CC-ChHhHH
Q 047305 606 SIEEFLQKGEVENAIQGLLEMDF------KLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKA----IV-TPPSCV 674 (767)
Q Consensus 606 l~~~~~~~g~~~~A~~~~~~~~~------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~-~~~~~~ 674 (767)
++.+|...|++++|+..+.+... ...+....++..++.+|.+.|++++|+.+++++++... .. -..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 78888888888888777777321 11223334688888888888888888888888865321 11 156788
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHHH
Q 047305 675 KLIHGLCKRGY-LDLAMDVFLYTLK 698 (767)
Q Consensus 675 ~l~~~~~~~g~-~~~A~~~~~~~~~ 698 (767)
.+|.+|.+.|+ +++|...|++++.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88888888884 5888888888865
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.03 E-value=5.9e-09 Score=96.74 Aligned_cols=88 Identities=10% Similarity=-0.020 Sum_probs=47.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhc
Q 047305 534 YGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQK 613 (767)
Q Consensus 534 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 613 (767)
+..+...+...|++++|+..++++. .|+...+..++.+|...|++++|+..|+++++..|.++.++..++.+|...
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 3444555555666666666665553 334555555555555666666666666555555555555555555555555
Q ss_pred CCHHHHHHHHHH
Q 047305 614 GEVENAIQGLLE 625 (767)
Q Consensus 614 g~~~~A~~~~~~ 625 (767)
|++++|+..+.+
T Consensus 85 ~~~~~A~~~~~~ 96 (213)
T 1hh8_A 85 EKYDLAIKDLKE 96 (213)
T ss_dssp TCHHHHHHHHHH
T ss_pred ccHHHHHHHHHH
Confidence 555555444444
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.02 E-value=3.1e-09 Score=89.88 Aligned_cols=119 Identities=8% Similarity=0.006 Sum_probs=84.9
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHH
Q 047305 564 PSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLI 643 (767)
Q Consensus 564 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~ 643 (767)
.+...+..++..+...|++++|...|+++++..|.+..++..++.++...|++++|+..+.+... ..|.++.++..++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~la~ 92 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQ-LEPTFIKGYTRKAA 92 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHH-hCCCchHHHHHHHH
Confidence 34556667777777788888888888888877777777777777777777777777777666322 24666666777777
Q ss_pred HHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 047305 644 GLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRG 684 (767)
Q Consensus 644 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 684 (767)
+|...|++++|+..++++++.. |.+...+..++.++...|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 7777777777777777777765 556666777777776655
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=8.5e-08 Score=93.27 Aligned_cols=233 Identities=8% Similarity=0.011 Sum_probs=167.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 047305 463 SLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVG-NINGALKLFKELQLKGLRPDSVTYGTLINGL 541 (767)
Q Consensus 463 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 541 (767)
++..+.......+..++|++.+++++..++. +...|+.-..++...| .+++++.+++.+.....+ +..+|+.-..++
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL 133 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 3344444445556667899999999887543 6677888777777788 599999999999987544 666787777777
Q ss_pred Hhc-C-CHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChh--------HHHHHHHHHHhccCCCccchHHHHHHHH
Q 047305 542 QRV-D-REEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFS--------LAFSLWLQYLRDISGRDDESMKSIEEFL 611 (767)
Q Consensus 542 ~~~-~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 611 (767)
... + ++++++.+++++++.. +.+...|..-.-++.+.|.++ ++++.++++++.+|.|..++...+.++.
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRV 212 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 666 6 7889999999998754 445666665555555666666 8999999999999999999999888888
Q ss_pred hcCC-------HHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCH--------------------HHHHHHHHHHHHc
Q 047305 612 QKGE-------VENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQV--------------------KEALNIFSVLVEC 664 (767)
Q Consensus 612 ~~g~-------~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~ 664 (767)
..+. ++++++.+.+.- ..+|.+..+|+.+..++.+.|+- .+..+....+...
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI-~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSI-HLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSD 291 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-
T ss_pred hccccccchHHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhc
Confidence 8776 677777777632 13588888898888888877664 2233333333222
Q ss_pred C-----CCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047305 665 K-----AIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 665 ~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 699 (767)
. ..+++.++..++++|...|+.++|.++++.+.+.
T Consensus 292 ~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 292 PLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1 1366778888899999889999999999887643
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.02 E-value=1.2e-09 Score=93.62 Aligned_cols=118 Identities=10% Similarity=-0.137 Sum_probs=95.9
Q ss_pred HHHHhhhCCCCC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCC
Q 047305 553 IFGQMPQNGCTP-SPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLN 631 (767)
Q Consensus 553 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 631 (767)
.|+++++. .| +...+..++..+.+.|++++|+..|+++++..|.++..+..++.++...|++++|+..+.+... .+
T Consensus 6 ~l~~al~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~ 82 (142)
T 2xcb_A 6 TLAMLRGL--SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL-MD 82 (142)
T ss_dssp ---CCTTC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC
T ss_pred hHHHHHcC--CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cC
Confidence 44444442 33 4456667777888999999999999999999999999999999999999999999999988432 35
Q ss_pred CCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHH
Q 047305 632 DFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCV 674 (767)
Q Consensus 632 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 674 (767)
|.++.++..++.+|...|++++|+..|+++++.. |.++....
T Consensus 83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 124 (142)
T 2xcb_A 83 INEPRFPFHAAECHLQLGDLDGAESGFYSARALA-AAQPAHEA 124 (142)
T ss_dssp TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTCGGGHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCcchHH
Confidence 9999999999999999999999999999998876 55554443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.01 E-value=1.2e-08 Score=94.66 Aligned_cols=144 Identities=13% Similarity=0.051 Sum_probs=85.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHH
Q 047305 498 TYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSC 577 (767)
Q Consensus 498 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 577 (767)
.+..+...+...|++++|+..|++.. .|+...+..+..++...|++++|+..++++++.. +.+...+..++.+|.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34455556666677777776666552 4455666666666677777777777777666543 334556666666666
Q ss_pred hcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHH
Q 047305 578 RRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNI 657 (767)
Q Consensus 578 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 657 (767)
..|++++|++.|+++++..|.+..... .. +.....|..+.++..++.+|...|++++|++.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~------~~-------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 143 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDY------KI-------------LGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQ 143 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEEC------GG-------------GTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHH------HH-------------hccccCccchHHHHHHHHHHHHccCHHHHHHH
Confidence 777777777777777666666553321 00 01112244444566666666666666666666
Q ss_pred HHHHHHcC
Q 047305 658 FSVLVECK 665 (767)
Q Consensus 658 ~~~~~~~~ 665 (767)
|+++++..
T Consensus 144 ~~~al~~~ 151 (213)
T 1hh8_A 144 LALATSMK 151 (213)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHcC
Confidence 66666554
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.01 E-value=3.5e-09 Score=89.14 Aligned_cols=120 Identities=11% Similarity=-0.015 Sum_probs=92.1
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHH
Q 047305 565 SPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIG 644 (767)
Q Consensus 565 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~ 644 (767)
+...+..++..+...|++++|...|+++++..|.++.++..++.++...|++++|+..+.+... ..|.++.++..++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAIC-IDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHh-cCccCHHHHHHHHHH
Confidence 3456666777777888888888888888888888877777888888888888888777777322 247777778888888
Q ss_pred HhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh
Q 047305 645 LCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYL 686 (767)
Q Consensus 645 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 686 (767)
|...|++++|+..++++.+.+ |.++.++..++.++...|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 888888888888888887776 66777777888888777764
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.00 E-value=6.9e-09 Score=102.34 Aligned_cols=120 Identities=8% Similarity=-0.043 Sum_probs=60.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhccCCC------ccchHHHHHHHHhcCCHHHHHHHHHH-hhhc-CCC---CCccc
Q 047305 569 YKSLMTWSCRRRKFSLAFSLWLQYLRDISGR------DDESMKSIEEFLQKGEVENAIQGLLE-MDFK-LND---FQLAP 637 (767)
Q Consensus 569 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~-~~p---~~~~~ 637 (767)
+..+..+|.. |++++|+..|+++++..|.. ..++..++.+|...|++++|+..+.+ +... ..+ .....
T Consensus 119 ~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 197 (307)
T 2ifu_A 119 LDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKK 197 (307)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHH
Confidence 3334444444 44555555554444433322 22334445555555555555555554 1110 000 01124
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCh-----HhHHHHHHHHHhcCChhHHHHH
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVECKAIVTP-----PSCVKLIHGLCKRGYLDLAMDV 692 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~ 692 (767)
+..++.++...|++++|+..|++++ .. |... .....++.++ ..|+.+.+..+
T Consensus 198 ~~~~g~~~~~~g~~~~A~~~~~~al-~~-p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 198 CIAQVLVQLHRADYVAAQKCVRESY-SI-PGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHT-TS-TTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHh-CC-CCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 6677777777788888888888887 43 3221 1233445444 56676666553
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.99 E-value=3.7e-07 Score=95.63 Aligned_cols=104 Identities=8% Similarity=0.059 Sum_probs=63.9
Q ss_pred cC-CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHH
Q 047305 251 LR-RVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGK-VKDAM 328 (767)
Q Consensus 251 ~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~ 328 (767)
.| +++.|..+|+.+... -|. |+++.+..+|++.+.. .|+...|...+....+.++ .+...
T Consensus 7 ~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~ 68 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLY 68 (493)
T ss_dssp -----CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTH
T ss_pred cCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHH
Confidence 45 366677777776653 122 8888888888888875 4688888888877766653 35566
Q ss_pred HHHHHHHHC-CCCC-CHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhC
Q 047305 329 KLLSDMRER-GIVP-DTYCYNALIKGFC----DLGLLDQARSLQVEIWKR 372 (767)
Q Consensus 329 ~~~~~~~~~-~~~~-~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~ 372 (767)
.+|+..... |..| +...|...+..+. ..++.+.+..+|+.++..
T Consensus 69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~ 118 (493)
T 2uy1_A 69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT 118 (493)
T ss_dssp HHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC
Confidence 677766553 4333 4566666665443 234567777777777764
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.99 E-value=3.8e-10 Score=112.62 Aligned_cols=157 Identities=11% Similarity=-0.018 Sum_probs=80.9
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHH
Q 047305 545 DREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLL 624 (767)
Q Consensus 545 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 624 (767)
+++++|+..++...+.. +.+...+..+...|.+.|++++|+..|+++++..|.+.... .+.+.+ +.
T Consensus 127 ~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~------------~~~~~~-~~ 192 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS------------NEEAQK-AQ 192 (336)
T ss_dssp EEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCC------------SHHHHH-HH
T ss_pred eecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCC------------hHHHHH-HH
Confidence 33444444444433311 11344555666666666666777666666666666653210 000000 00
Q ss_pred HhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 047305 625 EMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILR 704 (767)
Q Consensus 625 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 704 (767)
|....+|..++.+|.+.|++++|+..++++++.+ |.++.++..++.+|...|++++|+..|+++++.. |+
T Consensus 193 -------~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~ 262 (336)
T 1p5q_A 193 -------ALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PN 262 (336)
T ss_dssp -------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SS
T ss_pred -------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CC
Confidence 0012346666666666666666666666666665 5556666666666666666666666666666533 54
Q ss_pred HHHHHHHHHHHhhcCCccHHHH
Q 047305 705 PRVCNYLLRSLLFSKDNKKVHA 726 (767)
Q Consensus 705 ~~~~~~l~~~l~~~~~~~~~~a 726 (767)
.......+..++...|+ +++|
T Consensus 263 ~~~a~~~l~~~~~~~~~-~~~a 283 (336)
T 1p5q_A 263 NKAAKTQLAVCQQRIRR-QLAR 283 (336)
T ss_dssp CHHHHHHHHHHHHHHHH-HHHH
T ss_pred CHHHHHHHHHHHHHHHH-HHHH
Confidence 44333333333324444 4444
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.4e-08 Score=99.45 Aligned_cols=164 Identities=9% Similarity=-0.039 Sum_probs=105.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-----HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCC------ccch
Q 047305 535 GTLINGLQRVDREEDAFRIFGQMPQNGCTPS-----PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGR------DDES 603 (767)
Q Consensus 535 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~ 603 (767)
...+..+...|++++|...+.+..+...... ...+..++..+...|++++|...|+++++..+.. ..++
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 3444555666666666666666554321111 0122334444556667777777777776543332 2245
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhh-h-cCCCCC----ccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCC----C-ChHh
Q 047305 604 MKSIEEFLQKGEVENAIQGLLEMD-F-KLNDFQ----LAPYTIWLIGLCQDGQVKEALNIFSVLVECKAI----V-TPPS 672 (767)
Q Consensus 604 ~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~-~~~~ 672 (767)
..++.+|...|++++|+..+.+.. . ...|++ ..++..++.+|...|++++|+.+++++++.... . -..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 566777777777777777766621 1 112332 146899999999999999999999998764311 0 1567
Q ss_pred HHHHHHHHHhcCChhHH-HHHHHHHHH
Q 047305 673 CVKLIHGLCKRGYLDLA-MDVFLYTLK 698 (767)
Q Consensus 673 ~~~l~~~~~~~g~~~~A-~~~~~~~~~ 698 (767)
+..++.+|.+.|++++| ..++++++.
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 88999999999999999 888988864
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.98 E-value=4.3e-09 Score=104.97 Aligned_cols=164 Identities=7% Similarity=-0.100 Sum_probs=98.4
Q ss_pred CCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHH
Q 047305 510 GNINGALKLFKELQLKGLRP-DSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSL 588 (767)
Q Consensus 510 g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 588 (767)
+++++|+..++..... .| +...+..+...+.+.|++++|+..|+++++.. |+...+ ..+.+.
T Consensus 127 ~~~~~A~~~~~~a~~~--~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~-- 189 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEE--KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSF-----------SNEEAQ-- 189 (336)
T ss_dssp EEEECCCCGGGCCHHH--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCC-----------CSHHHH--
T ss_pred eecccccchhcCCHHH--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccC-----------ChHHHH--
Confidence 3444555555444332 23 35578889999999999999999999998853 221000 001111
Q ss_pred HHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCC
Q 047305 589 WLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIV 668 (767)
Q Consensus 589 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 668 (767)
+..|....++.+++.+|.+.|++++|+..+.+... ..|.++.+|..++.+|...|++++|+..|+++++.+ |.
T Consensus 190 -----~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~-~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~ 262 (336)
T 1p5q_A 190 -----KAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE-LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PN 262 (336)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SS
T ss_pred -----HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CC
Confidence 11111223444555555555555555555555211 236666667777777777777777777777777765 66
Q ss_pred ChHhHHHHHHHHHhcCChhHH-HHHHHHHH
Q 047305 669 TPPSCVKLIHGLCKRGYLDLA-MDVFLYTL 697 (767)
Q Consensus 669 ~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 697 (767)
++.++..++.++...|++++| ...|+++.
T Consensus 263 ~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 263 NKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777777776 44555554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.98 E-value=5.4e-09 Score=98.09 Aligned_cols=188 Identities=10% Similarity=-0.035 Sum_probs=147.7
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCHhhHHHH-------HHHHHhcCChhHHHHHHHHHHhccCCCccchHH----------
Q 047305 543 RVDREEDAFRIFGQMPQNGCTPSPAVYKSL-------MTWSCRRRKFSLAFSLWLQYLRDISGRDDESMK---------- 605 (767)
Q Consensus 543 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~---------- 605 (767)
..++...|.+.|.++.+.. +.....|..+ ..++.+.++..+++..+.+.++..|......+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 5899999999999999853 4456788777 577777888889998898888877765554444
Q ss_pred -----------HHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC--hHh
Q 047305 606 -----------SIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVT--PPS 672 (767)
Q Consensus 606 -----------l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~ 672 (767)
++..+...|++++|.+.+..+.. ..|.+. ....++.++.+.|+|++|+..|++..... .|. ..+
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~-~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPV-AGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC-TTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 67889999999999999988543 347777 78999999999999999999999776542 221 347
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHhhcCCccHHHHHHHHHHHHHc
Q 047305 673 CVKLIHGLCKRGYLDLAMDVFLYTLKNGFILR-PR-VCNYLLRSLLFSKDNKKVHAYHLLCRMKSV 736 (767)
Q Consensus 673 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~-~~~~l~~~l~~~~~~~~~~a~~~~~~~~~~ 736 (767)
+..++.++...|++++|+..|+++......|. .. .......++. +.|+ .++|..+|+++...
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~-~lGr-~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARR-SQGN-ESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHH-HHTC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHH-HcCC-HHHHHHHHHHHHhc
Confidence 88899999999999999999999985332254 32 3444555555 8888 99999999999875
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=9.5e-08 Score=92.60 Aligned_cols=183 Identities=9% Similarity=-0.096 Sum_probs=123.4
Q ss_pred HHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcC--ChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCC-HHHHHHHH
Q 047305 547 EEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRR--KFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGE-VENAIQGL 623 (767)
Q Consensus 547 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~ 623 (767)
+++++.+++.++... +.+..+|..-..++.+.| .+++++++++++++.+|.|..++.....+....|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 456777777776643 345556655555555556 36777777777777777777777777777777776 46776666
Q ss_pred HHhhhcCCCCCccchHHHHHHHhhc--------------CCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc------
Q 047305 624 LEMDFKLNDFQLAPYTIWLIGLCQD--------------GQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKR------ 683 (767)
Q Consensus 624 ~~~~~~~~p~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 683 (767)
.++-. .+|.+..+|+..+.++... +.++++++++++++..+ |.|..+|+.+.+.+...
T Consensus 169 ~~~I~-~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLIT-RNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHH-HCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHH-HCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCcccc
Confidence 66322 3577777777777776665 45788888888888887 77888887777777765
Q ss_pred -----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH----hhcCCccHHHHHHHHHHHHHc
Q 047305 684 -----GYLDLAMDVFLYTLKNGFILRPRVCNYLLRSL----LFSKDNKKVHAYHLLCRMKSV 736 (767)
Q Consensus 684 -----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l----~~~~~~~~~~a~~~~~~~~~~ 736 (767)
+.++++++.++++++.. |+.. +..+...+ ....|. .+++...+.++.+.
T Consensus 247 ~~~~~~~l~~el~~~~elle~~--pd~~-w~l~~~~~~~~~~~~~~~-~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELE--PENK-WCLLTIILLMRALDPLLY-EKETLQYFSTLKAV 304 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHC--TTCH-HHHHHHHHHHHHHCTTTT-HHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhC--cccc-hHHHHHHHHHHhhccccc-HHHHHHHHHHHHHh
Confidence 46788888888888744 7763 33322221 213444 67888888888754
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.94 E-value=7.5e-09 Score=86.34 Aligned_cols=57 Identities=9% Similarity=0.016 Sum_probs=28.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHH
Q 047305 569 YKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLE 625 (767)
Q Consensus 569 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 625 (767)
+..++..+.+.|++++|++.|+++++.+|.++.++.+++.+|...|++++|++.+.+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~ 67 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEK 67 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHH
Confidence 344455555555555555555555555554444444444444444444444444443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.94 E-value=1.3e-08 Score=84.68 Aligned_cols=116 Identities=11% Similarity=0.089 Sum_probs=73.4
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHH
Q 047305 566 PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGL 645 (767)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~ 645 (767)
...+..++..+...|++++|.+.|+++++..|.++.++..++.++...|++++|+..+.+... ..|.++.++..++.+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE-LDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-hCCccHHHHHHHHHHH
Confidence 445556666667777777777777777766666666666666666666666666666655322 2355555566666666
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc
Q 047305 646 CQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKR 683 (767)
Q Consensus 646 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 683 (767)
...|++++|+..++++.+.. |.++..+..++.++...
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhc
Confidence 66677777777777666665 55556666666555443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.93 E-value=2.4e-07 Score=90.55 Aligned_cols=163 Identities=9% Similarity=0.055 Sum_probs=120.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhccCCCccc------hHHHHHHHHhcCCHHHHHHHHHHh-hhcCCCCC----ccchHH
Q 047305 572 LMTWSCRRRKFSLAFSLWLQYLRDISGRDDE------SMKSIEEFLQKGEVENAIQGLLEM-DFKLNDFQ----LAPYTI 640 (767)
Q Consensus 572 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~------~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~p~~----~~~~~~ 640 (767)
.+..+...|++++|...++++++..+..+.. +..++..+...|++++|+..+.+. .......+ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566788999999999999999877766552 224778888899999999999984 32212222 225899
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHc------CCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCCC-HHHHH
Q 047305 641 WLIGLCQDGQVKEALNIFSVLVEC------KAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNG----FILR-PRVCN 709 (767)
Q Consensus 641 l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~-~~~~~ 709 (767)
+|.+|...|++++|+.+|+++++. ..+....++..++.+|...|++++|+.+++++++.. ..+. ...+.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 999999999999999999999841 212224478899999999999999999999998632 1122 22344
Q ss_pred HHHHHHhhcCCccHHHHHHHHHHHHH
Q 047305 710 YLLRSLLFSKDNKKVHAYHLLCRMKS 735 (767)
Q Consensus 710 ~l~~~l~~~~~~~~~~a~~~~~~~~~ 735 (767)
.+...+. ..|+.+++|...+++...
T Consensus 241 ~lg~~~~-~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLR-KLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHH-HTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHH-HhCCcHHHHHHHHHHHHH
Confidence 4444444 777536999999998764
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.2e-07 Score=92.20 Aligned_cols=225 Identities=9% Similarity=-0.061 Sum_probs=167.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhc-C-Ch
Q 047305 506 FCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVD-REEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRR-R-KF 582 (767)
Q Consensus 506 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~ 582 (767)
..+.+..++|+++++.++..+.. +..+|+.-..++...| .+++++.+++.++... +.+..+|..-..++.+. + ++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCC
T ss_pred HHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCCh
Confidence 34455667899999999987433 4556777777788888 5999999999999864 45667777666666666 7 89
Q ss_pred hHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHH--------HHHHHHHHhhhcCCCCCccchHHHHHHHhhcCC----
Q 047305 583 SLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVE--------NAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQ---- 650 (767)
Q Consensus 583 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~---- 650 (767)
++++++++++++.+|.+..++.....+..+.|.++ ++++.+.++-. .+|.+..+|+..+.++.+.++
T Consensus 142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~-~dp~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR-VDGRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHhccccccc
Confidence 99999999999999999999999988888877776 78887777432 369999999999999999887
Q ss_pred ---HHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh--------------------hHHHHHHHHHHHCC----CCC
Q 047305 651 ---VKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYL--------------------DLAMDVFLYTLKNG----FIL 703 (767)
Q Consensus 651 ---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~----~~~ 703 (767)
++++++.+++++..+ |.|..+|+.+..++.+.|+- .+.......+.... ..+
T Consensus 221 ~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPL 299 (349)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCS
T ss_pred hHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCC
Confidence 799999999999997 88999999999999887764 12222222221111 112
Q ss_pred CHHHHHHHHHHHhhcCCccHHHHHHHHHHHHH
Q 047305 704 RPRVCNYLLRSLLFSKDNKKVHAYHLLCRMKS 735 (767)
Q Consensus 704 ~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~ 735 (767)
.+.....++.-.+...|+ .++|.++++.+.+
T Consensus 300 ~s~~al~~l~d~~~~~~~-~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 300 PVPLALEYLADSFIEQNR-VDDAAKVFEKLSS 330 (349)
T ss_dssp CCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcCC-HHHHHHHHHHHHh
Confidence 233333333333336776 8999999999864
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.92 E-value=7.6e-09 Score=86.48 Aligned_cols=96 Identities=6% Similarity=-0.082 Sum_probs=48.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhh
Q 047305 568 VYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQ 647 (767)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 647 (767)
.+...+..+.+.|++++|+..|+++++..|.++.++..++.++...|++++|+..+.+... .+|.++.+|..++.+|..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE-KDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHH
Confidence 3444555555566666666666666555555555555555555555555555444444211 134444445555555555
Q ss_pred cCCHHHHHHHHHHHHHc
Q 047305 648 DGQVKEALNIFSVLVEC 664 (767)
Q Consensus 648 ~g~~~~A~~~~~~~~~~ 664 (767)
.|++++|+..|+++++.
T Consensus 85 ~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 85 VKEYASALETLDAARTK 101 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHh
Confidence 55555555555554443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.91 E-value=8.6e-09 Score=86.15 Aligned_cols=99 Identities=13% Similarity=0.041 Sum_probs=88.3
Q ss_pred CccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 047305 599 RDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIH 678 (767)
Q Consensus 599 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 678 (767)
....+..++..+...|++++|+..+.+... ..|.++.+|..++.+|...|++++|+..++++++.+ |.++.++..++.
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIK-RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 345667889999999999999999998422 358899999999999999999999999999999987 888999999999
Q ss_pred HHHhcCChhHHHHHHHHHHHC
Q 047305 679 GLCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 679 ~~~~~g~~~~A~~~~~~~~~~ 699 (767)
+|...|++++|+..|+++++.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHh
Confidence 999999999999999999874
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.90 E-value=6.1e-09 Score=93.25 Aligned_cols=126 Identities=6% Similarity=0.047 Sum_probs=100.0
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHH-HHhcCCH--HH
Q 047305 542 QRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEE-FLQKGEV--EN 618 (767)
Q Consensus 542 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~--~~ 618 (767)
...|++++|...+++.++.. +.+...+..++.+|...|++++|...|+++++..|.++.++..++.+ +...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 45677888888888887653 45677888888888889999999999999999999888888888888 7788888 88
Q ss_pred HHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCh
Q 047305 619 AIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTP 670 (767)
Q Consensus 619 A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 670 (767)
|+..+.+... ..|.++.++..++.+|...|++++|+..++++++.. |.++
T Consensus 100 A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~ 149 (177)
T 2e2e_A 100 TRAMIDKALA-LDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN-SPRI 149 (177)
T ss_dssp HHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CTTS
T ss_pred HHHHHHHHHH-hCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC-CCCc
Confidence 9888887432 358888889999999999999999999999998886 4444
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.1e-08 Score=85.27 Aligned_cols=105 Identities=14% Similarity=0.109 Sum_probs=86.2
Q ss_pred cchHHHHHHHHhcCCHHHHHHHHHH-hhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCh-------Hh
Q 047305 601 DESMKSIEEFLQKGEVENAIQGLLE-MDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTP-------PS 672 (767)
Q Consensus 601 ~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~ 672 (767)
.++..+|..+.+.|++++|+..+.+ +. .+|.++.+|..++.+|...|++++|++.++++++.+ |.+. .+
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVG-RETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhC-cccchhhHHHHHH
Confidence 3456789999999999999999988 44 369999999999999999999999999999998765 3322 36
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 047305 673 CVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNY 710 (767)
Q Consensus 673 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 710 (767)
+..+|.++...|++++|++.|++++.. .|++.+...
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 778899999999999999999999874 377665433
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.89 E-value=1.2e-08 Score=93.18 Aligned_cols=123 Identities=7% Similarity=-0.117 Sum_probs=68.3
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCc----------------cchHHHHHHHHhcCCHHHHHHHHHHhhhc
Q 047305 566 PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRD----------------DESMKSIEEFLQKGEVENAIQGLLEMDFK 629 (767)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 629 (767)
...+..++..+.+.|++++|+..|+++++..|.++ .++..++.+|...|++++|+..+.+...
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~- 116 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK- 116 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-
Confidence 34455666667777888888888888887777666 3444455555555555555555444211
Q ss_pred CCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHH
Q 047305 630 LNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAM 690 (767)
Q Consensus 630 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 690 (767)
..|.++.++..++.+|...|++++|+..|+++++.. |.++.++..++.++...|+.+++.
T Consensus 117 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 117 IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred hCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 134455555555555555555555555555555544 444555555555555554444444
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.88 E-value=1.1e-08 Score=90.09 Aligned_cols=107 Identities=13% Similarity=0.044 Sum_probs=72.7
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHH
Q 047305 565 SPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIG 644 (767)
Q Consensus 565 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~ 644 (767)
+...+..+...+.+.|++++|+..|+++++..|.++.++..++.+|...|++++|+..+.+... .+|.++.+|..++.+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATV-VDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH-hCCCCHHHHHHHHHH
Confidence 3456666677777777777777777777777777777777777777777777777666666321 246666667777777
Q ss_pred HhhcCCHHHHHHHHHHHHHcCCCCChHhH
Q 047305 645 LCQDGQVKEALNIFSVLVECKAIVTPPSC 673 (767)
Q Consensus 645 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 673 (767)
|...|++++|+..|+++++.. |.++..+
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 116 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAE-GNGGSDA 116 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH-SSSCCHH
T ss_pred HHHccCHHHHHHHHHHHHHhC-CCchHHH
Confidence 777777777777777776665 4444433
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.88 E-value=2.6e-08 Score=81.94 Aligned_cols=108 Identities=11% Similarity=-0.041 Sum_probs=55.0
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHh
Q 047305 567 AVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLC 646 (767)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~ 646 (767)
..+..++..+...|++++|...|+++++..|.++.++..++.++...|++++|+..+.+... ..|.++.++..++.+|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD-LKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHH-hCcccHHHHHHHHHHHH
Confidence 34445555555666666666666666655555555555555555555555555544444211 12444444555555555
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChHhHHHH
Q 047305 647 QDGQVKEALNIFSVLVECKAIVTPPSCVKL 676 (767)
Q Consensus 647 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 676 (767)
..|++++|...++++.+.+ |.++..+..+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 112 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHE-ANNPQLKEGL 112 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTC-TTCHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 5555555555555555443 3344443333
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=6e-07 Score=86.99 Aligned_cols=223 Identities=8% Similarity=-0.050 Sum_probs=169.0
Q ss_pred hcCCH-HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 047305 473 TAGLI-HKAYKILMQLAESGNLPDIITYNSLINGFCKVGN----------INGALKLFKELQLKGLRPDSVTYGTLINGL 541 (767)
Q Consensus 473 ~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 541 (767)
+.|.+ ++|+..++.++..++. +...|+.--..+...+. +++++.+++.+.....+ +..+|+.-..++
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 44554 4799999999887533 56667665555544443 67899999999987544 777888888888
Q ss_pred HhcC--CHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCC-hhHHHHHHHHHHhccCCCccchHHHHHHHHhc-----
Q 047305 542 QRVD--REEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRK-FSLAFSLWLQYLRDISGRDDESMKSIEEFLQK----- 613 (767)
Q Consensus 542 ~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~----- 613 (767)
...+ .+++++.++.++.+.. +.+...|..-.-++...|. ++++++.++++++.+|.|..+++..+.++...
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~ 197 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 197 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC-
T ss_pred hccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccc
Confidence 8877 4899999999999864 4566677666666777888 59999999999999999999999988887765
Q ss_pred ---------CCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhc-----------CCHHHHHHHHHHHHHcCCCCChHhH
Q 047305 614 ---------GEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQD-----------GQVKEALNIFSVLVECKAIVTPPSC 673 (767)
Q Consensus 614 ---------g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~ 673 (767)
+.++++++.+.+.-. .+|++..+|+-+.+++... +.++++++.++++++.. |.+.-++
T Consensus 198 ~~~~~~~~~~~~~eEle~~~~ai~-~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~-pd~~w~l 275 (331)
T 3dss_A 198 SGPQGRLPENVLLKELELVQNAFF-TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE-PENKWCL 275 (331)
T ss_dssp -----CCCHHHHHHHHHHHHHHHH-HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred cccccccchHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC-cccchHH
Confidence 457788888887322 3599999999888888777 46899999999999986 5554333
Q ss_pred HHHHHHH---HhcCChhHHHHHHHHHHHCC
Q 047305 674 VKLIHGL---CKRGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 674 ~~l~~~~---~~~g~~~~A~~~~~~~~~~~ 700 (767)
..++... ...|..++....+.++++.+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 276 LTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp HHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 3333222 14677889999999998743
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.88 E-value=1.4e-09 Score=99.50 Aligned_cols=155 Identities=10% Similarity=-0.092 Sum_probs=109.2
Q ss_pred HHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCc----------------cchH
Q 047305 576 SCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQL----------------APYT 639 (767)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~----------------~~~~ 639 (767)
....|.+++|.+.|+...+..+.....+..++..+...|++++|+..+.+... ..|.++ .++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD-FFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp --------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HHhcccccchhhHHHHHHHHHHHHHH
Confidence 44567777777777665555566667788899999999999999999998432 235555 6799
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcC
Q 047305 640 IWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSK 719 (767)
Q Consensus 640 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 719 (767)
.++.+|...|++++|+..++++++.. |.++.++..++.+|...|++++|+..|+++++.. |+.......+..+....
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNSYELCVNKL 169 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999987 7889999999999999999999999999998854 76655454444444344
Q ss_pred CccHHHHH-HHHHHHHH
Q 047305 720 DNKKVHAY-HLLCRMKS 735 (767)
Q Consensus 720 ~~~~~~a~-~~~~~~~~ 735 (767)
++ .+++. ..++++-.
T Consensus 170 ~~-~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 170 KE-ARKKDKLTFGGMFD 185 (198)
T ss_dssp HH-HHC-----------
T ss_pred HH-HHHHHHHHHHHHhc
Confidence 44 44444 44444443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.87 E-value=1e-08 Score=94.22 Aligned_cols=155 Identities=11% Similarity=-0.118 Sum_probs=89.9
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHh------ccCCCccchHHHHHHHHhcCCHH
Q 047305 544 VDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLR------DISGRDDESMKSIEEFLQKGEVE 617 (767)
Q Consensus 544 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~p~~~~~~~~l~~~~~~~g~~~ 617 (767)
.|++++|.++++.+.. .......++..+..++...|++++|...++++++ ..|....++..++.++...|+++
T Consensus 5 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 5 AHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp --CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4555555553333322 1112344445555555555555555555555554 22223334445556666666666
Q ss_pred HHHHHHHH-hhh-cCCC----CCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCC-CCC----hHhHHHHHHHHHhcCCh
Q 047305 618 NAIQGLLE-MDF-KLND----FQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKA-IVT----PPSCVKLIHGLCKRGYL 686 (767)
Q Consensus 618 ~A~~~~~~-~~~-~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~ 686 (767)
+|+..+.+ +.. ...+ ....++..++.++...|++++|+..++++++... ..+ ..++..++.++...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 66555555 111 0012 1234588889999999999999999999864311 111 23457889999999999
Q ss_pred hHHHHHHHHHHHC
Q 047305 687 DLAMDVFLYTLKN 699 (767)
Q Consensus 687 ~~A~~~~~~~~~~ 699 (767)
++|...++++++.
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988763
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.2e-07 Score=92.88 Aligned_cols=165 Identities=10% Similarity=0.056 Sum_probs=120.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCcc------chHHHHHHHHhcCCHHHHHHHHHH-hhhcCCCCC----cc
Q 047305 568 VYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDD------ESMKSIEEFLQKGEVENAIQGLLE-MDFKLNDFQ----LA 636 (767)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~p~~----~~ 636 (767)
.+...+..+...|++++|.+.+.+.++..+.... .+..++..+...|++++|+..+.+ +.......+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4444566788999999999999999988776543 234567788889999999999888 332111111 33
Q ss_pred chHHHHHHHhhcCCHHHHHHHHHHHH---HcCCCCC----hHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC----CC-
Q 047305 637 PYTIWLIGLCQDGQVKEALNIFSVLV---ECKAIVT----PPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFI----LR- 704 (767)
Q Consensus 637 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~- 704 (767)
+++.+|.+|...|++++|+.+|++++ +.. +.+ ..++..++.+|...|++++|+.+++++++.... ..
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~-~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEAL-HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-CccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 68999999999999999999999997 332 222 258889999999999999999999999864211 11
Q ss_pred HHHHHHHHHHHhhcCCccHHHH-HHHHHHHHH
Q 047305 705 PRVCNYLLRSLLFSKDNKKVHA-YHLLCRMKS 735 (767)
Q Consensus 705 ~~~~~~l~~~l~~~~~~~~~~a-~~~~~~~~~ 735 (767)
...+..+...+. ..|+ +++| ...+++...
T Consensus 236 ~~~~~~lg~~y~-~~g~-~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLR-KLEY-EEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHH-HTTC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HcCC-cHHHHHHHHHHHHH
Confidence 223333444444 7887 8899 777887653
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.85 E-value=3.6e-08 Score=87.06 Aligned_cols=128 Identities=9% Similarity=-0.001 Sum_probs=85.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHh
Q 047305 533 TYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQ 612 (767)
Q Consensus 533 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 612 (767)
.+..+...+...|++++|...++++++.. +.+..++..++.++...|++++|...++++++..|.++.++..++.++..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 35555566666777777777777766542 33566666677777777777777777777777777777777777777777
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCccchHHHHH--HHhhcCCHHHHHHHHHHHH
Q 047305 613 KGEVENAIQGLLEMDFKLNDFQLAPYTIWLI--GLCQDGQVKEALNIFSVLV 662 (767)
Q Consensus 613 ~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~ 662 (767)
.|++++|+..+.+... ..|.+...+..++. .+...|++++|++.+++..
T Consensus 94 ~~~~~~A~~~~~~a~~-~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 94 LGKFRAALRDYETVVK-VKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp TTCHHHHHHHHHHHHH-HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 7777777777766321 24666555533333 3666778888888777764
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.8e-08 Score=85.67 Aligned_cols=99 Identities=11% Similarity=-0.079 Sum_probs=54.7
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHH
Q 047305 565 SPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIG 644 (767)
Q Consensus 565 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~ 644 (767)
+...+..++..+...|++++|...|.++++..|.++.++..++.++...|++++|+..+.+... ..|.++.++..++.+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE-LDGQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-hCchhHHHHHHHHHH
Confidence 4455555556666666666666666666665555555555555555555555555555554211 235555555555555
Q ss_pred HhhcCCHHHHHHHHHHHHHc
Q 047305 645 LCQDGQVKEALNIFSVLVEC 664 (767)
Q Consensus 645 ~~~~g~~~~A~~~~~~~~~~ 664 (767)
|...|++++|+..|+++++.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 55555555555555555443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.84 E-value=2.1e-08 Score=84.59 Aligned_cols=111 Identities=14% Similarity=-0.025 Sum_probs=94.8
Q ss_pred cCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHH
Q 047305 596 ISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVK 675 (767)
Q Consensus 596 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 675 (767)
.|.....+..++..+...|++++|+..+.+... ..|.+..++..++.+|...|++++|+..++++++.. +.++.++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 89 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIK-RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTR 89 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHT-TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 355566778899999999999999999998432 358888889999999999999999999999999987 778899999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 047305 676 LIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNY 710 (767)
Q Consensus 676 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 710 (767)
++.+|...|++++|+..|+++++.. |+......
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~ 122 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLD--SSCKEAAD 122 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--GGGTHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhC--CCchHHHH
Confidence 9999999999999999999998754 65544333
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.82 E-value=3.5e-08 Score=80.17 Aligned_cols=103 Identities=10% Similarity=-0.076 Sum_probs=68.0
Q ss_pred cCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCC--ChHhH
Q 047305 596 ISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIV--TPPSC 673 (767)
Q Consensus 596 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~ 673 (767)
.|.+...+..++..+...|++++|+..+.+... ..|.+..++..++.++...|++++|+..++++++.. +. +..++
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 79 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQ-LDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVW 79 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHH
Confidence 355666666666666666777766666666321 235566667777777777777777777777777665 55 56667
Q ss_pred HHHHHHHHhc-CChhHHHHHHHHHHHCC
Q 047305 674 VKLIHGLCKR-GYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 674 ~~l~~~~~~~-g~~~~A~~~~~~~~~~~ 700 (767)
..++.++... |++++|++.+++++...
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 80 AAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 7777777777 77777777777776543
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.81 E-value=5.1e-08 Score=81.05 Aligned_cols=107 Identities=13% Similarity=0.124 Sum_probs=90.9
Q ss_pred ccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 047305 600 DDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHG 679 (767)
Q Consensus 600 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 679 (767)
...+..++..+...|++++|++.+.+... ..|.++.++..++.++...|++++|+.+++++.+.. +.++.++..++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALE-LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-HCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 45677889999999999999999988432 257788889999999999999999999999999886 7788899999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 047305 680 LCKRGYLDLAMDVFLYTLKNGFILRPRVCNY 710 (767)
Q Consensus 680 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 710 (767)
|...|++++|...++++++.. |+......
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~ 115 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD--PNNAEAKQ 115 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC--CCcHHHHH
Confidence 999999999999999998754 65444333
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=2.1e-08 Score=82.75 Aligned_cols=94 Identities=7% Similarity=-0.080 Sum_probs=58.2
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 047305 603 SMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCK 682 (767)
Q Consensus 603 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 682 (767)
+..++..+.+.|++++|+..+.+... ..|.++.+|..++.++...|++++|+..|+++++.+ |.++.++..++.+|..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~-~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQ-KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH-HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 34455555566666666555555221 236666666666666666666666666666666665 5566666666666666
Q ss_pred cCChhHHHHHHHHHHH
Q 047305 683 RGYLDLAMDVFLYTLK 698 (767)
Q Consensus 683 ~g~~~~A~~~~~~~~~ 698 (767)
.|++++|+..|+++++
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666666654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=1.7e-08 Score=83.19 Aligned_cols=97 Identities=9% Similarity=-0.068 Sum_probs=82.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhh
Q 047305 568 VYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQ 647 (767)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 647 (767)
.+..++..+.+.|++++|+..|+++++..|.++.++..++.++...|++++|+..+.+.. ..+|+++.++..++.+|..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al-~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHAR-MLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHH
Confidence 345566778889999999999999999999999999999999999999999998888832 2358888889999999999
Q ss_pred cCCHHHHHHHHHHHHHcC
Q 047305 648 DGQVKEALNIFSVLVECK 665 (767)
Q Consensus 648 ~g~~~~A~~~~~~~~~~~ 665 (767)
.|++++|+..++++++.+
T Consensus 98 ~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 999999999999998765
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.79 E-value=6.4e-08 Score=85.17 Aligned_cols=107 Identities=8% Similarity=-0.068 Sum_probs=93.6
Q ss_pred CCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHH
Q 047305 597 SGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKL 676 (767)
Q Consensus 597 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 676 (767)
+.+...+..++..+...|++++|+..+.+... ..|.++.+|..++.+|...|++++|+..|+++++.+ |.++.++..+
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 85 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALS-IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRL 85 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 33455677889999999999999999998432 358899999999999999999999999999999997 8889999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 047305 677 IHGLCKRGYLDLAMDVFLYTLKNGFILRPRV 707 (767)
Q Consensus 677 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 707 (767)
+.+|...|++++|+..|+++++.. |+...
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~--p~~~~ 114 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAE--GNGGS 114 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH--SSSCC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC--CCchH
Confidence 999999999999999999998854 66543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=3.2e-08 Score=83.12 Aligned_cols=111 Identities=10% Similarity=-0.062 Sum_probs=94.2
Q ss_pred cCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHH
Q 047305 596 ISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVK 675 (767)
Q Consensus 596 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 675 (767)
.|.+...+..++..+...|++++|+..+.+... ..|.++.++..++.++...|++++|+..++++.+.. |.++.++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 85 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIE-LNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGR 85 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHH
Confidence 345556777889999999999999999998432 258888889999999999999999999999999886 778899999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 047305 676 LIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNY 710 (767)
Q Consensus 676 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 710 (767)
++.++...|++++|...|+++++.. |+......
T Consensus 86 ~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~ 118 (131)
T 2vyi_A 86 MGLALSSLNKHVEAVAYYKKALELD--PDNETYKS 118 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcC--ccchHHHH
Confidence 9999999999999999999998864 65444333
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.77 E-value=3.9e-08 Score=83.54 Aligned_cols=104 Identities=13% Similarity=-0.087 Sum_probs=91.4
Q ss_pred ccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHH
Q 047305 595 DISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCV 674 (767)
Q Consensus 595 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 674 (767)
..|.++..+..++..+...|++++|+..+.+... ..|.++.++..++.+|...|++++|+..++++++.+ |.++.++.
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 81 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAIT-RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHF 81 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHh-hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHH
Confidence 3566778888999999999999999999988422 358888899999999999999999999999999987 78899999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC
Q 047305 675 KLIHGLCKRGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 675 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 700 (767)
.++.+|...|++++|+..|+++++..
T Consensus 82 ~l~~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 82 FLGQCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHC
Confidence 99999999999999999999998743
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.77 E-value=1e-07 Score=79.92 Aligned_cols=94 Identities=15% Similarity=-0.008 Sum_probs=49.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCc---cchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC---hHhHHHHH
Q 047305 604 MKSIEEFLQKGEVENAIQGLLEMDFKLNDFQL---APYTIWLIGLCQDGQVKEALNIFSVLVECKAIVT---PPSCVKLI 677 (767)
Q Consensus 604 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~ 677 (767)
..++..+...|++++|+..+.+... ..|.++ .++..++.+|...|++++|+..|+++++.. |.+ +.++..++
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~-~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLE-LYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH-HCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH-HCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHH
Confidence 3444444444555555444444211 123333 345556666666666666666666665554 344 44555566
Q ss_pred HHHHhcCChhHHHHHHHHHHHC
Q 047305 678 HGLCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 678 ~~~~~~g~~~~A~~~~~~~~~~ 699 (767)
.+|...|++++|+..|+++++.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 6666666666666666666553
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.76 E-value=7.8e-08 Score=82.88 Aligned_cols=101 Identities=15% Similarity=-0.066 Sum_probs=53.0
Q ss_pred CHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHH
Q 047305 565 SPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIG 644 (767)
Q Consensus 565 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~ 644 (767)
+...+..++..+...|++++|...|+++++..|.++. ...++..++.+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~--------------------------------~~~~~~~~a~~ 74 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQD--------------------------------QAVLHRNRAAC 74 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHH--------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchH--------------------------------HHHHHHHHHHH
Confidence 3444555555555556666666666555555544300 02335555555
Q ss_pred HhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 645 LCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 645 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
|...|++++|+..++++++.. |.++.++..++.+|...|++++|...|+++++
T Consensus 75 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 75 HLKLEDYDKAETEASKAIEKD-GGDVKALYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555555543 44455555555555555555555555555554
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.4e-07 Score=79.06 Aligned_cols=107 Identities=10% Similarity=-0.018 Sum_probs=88.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhccCCCc---cchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC---ccchHHHH
Q 047305 569 YKSLMTWSCRRRKFSLAFSLWLQYLRDISGRD---DESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQ---LAPYTIWL 642 (767)
Q Consensus 569 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~---~~~~~~l~ 642 (767)
+..++..+...|++++|...|+++++..|.++ .++..++.++...|++++|+..+.+... ..|++ +.++..++
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~-~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVS-RYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH-HCCCCcccHHHHHHHH
Confidence 44566778899999999999999999999888 6888999999999999999999988432 24777 66799999
Q ss_pred HHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHH
Q 047305 643 IGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLI 677 (767)
Q Consensus 643 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 677 (767)
.+|...|++++|+..|+++++.. |.++.+.....
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~a~~ 117 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQY-PGSDAARVAQE 117 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTSHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCChHHHHHHH
Confidence 99999999999999999998876 66655544433
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.74 E-value=1.2e-07 Score=77.89 Aligned_cols=108 Identities=16% Similarity=0.045 Sum_probs=91.1
Q ss_pred cchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 047305 601 DESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGL 680 (767)
Q Consensus 601 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 680 (767)
..+..++..+...|++++|+..+.+... ..|.++.++..++.++...|++++|+..++++.+.. |.++.++..++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIK-LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHH-HCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 4567788999999999999999998432 358888889999999999999999999999999887 77889999999999
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047305 681 CKRGYLDLAMDVFLYTLKNGFILRPRVCNYLL 712 (767)
Q Consensus 681 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 712 (767)
...|++++|...++++++.+ |+.......+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l 112 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE--ANNPQLKEGL 112 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC--TTCHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcC--CCCHHHHHHH
Confidence 99999999999999998744 6655444333
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.74 E-value=4e-08 Score=86.32 Aligned_cols=119 Identities=13% Similarity=0.081 Sum_probs=85.7
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhcc--------CCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccc
Q 047305 566 PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDI--------SGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAP 637 (767)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~ 637 (767)
...+...+..+.+.|++++|+..|.++++.. |.++. ...+ .|.+..+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~---------------------~~~~----~~~~~~~ 65 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPE---------------------WVEL----DRKNIPL 65 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHH---------------------HHHH----HHTHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHH---------------------HHHH----HHHHHHH
Confidence 3455666777788888888888888887652 22111 0011 2555567
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHH
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPR-VCNYLL 712 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~ 712 (767)
|..++.+|.+.|++++|+..++++++.+ |.++.++..++.+|...|++++|+..|+++++.. |+.. .+...+
T Consensus 66 ~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~l 138 (162)
T 3rkv_A 66 YANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH--PAAASVVAREM 138 (162)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--GGGHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC--CCCHHHHHHHH
Confidence 8888888888888888888888888886 7778888888888888888888888888888754 6655 444433
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.73 E-value=3.9e-08 Score=102.98 Aligned_cols=118 Identities=12% Similarity=0.029 Sum_probs=73.0
Q ss_pred HHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHH
Q 047305 575 WSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEA 654 (767)
Q Consensus 575 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 654 (767)
.+.+.|++++|++.|+++++..|.+..++..++.+|.+.|++++|++.+.+.. ...|.++.++..++.+|...|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~l~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAI-ELDKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HSCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 34456666666666666666666666666666666666666666666666632 13466666666677777777777777
Q ss_pred HHHHHHHHHcCCCCChHhHHHHHHH--HHhcCChhHHHHHHH
Q 047305 655 LNIFSVLVECKAIVTPPSCVKLIHG--LCKRGYLDLAMDVFL 694 (767)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 694 (767)
++.|+++++.. |.++.++..++.+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777766665 5555566666655 666666777776666
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.72 E-value=5.9e-09 Score=108.81 Aligned_cols=145 Identities=10% Similarity=-0.021 Sum_probs=84.6
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHH
Q 047305 566 PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGL 645 (767)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~ 645 (767)
...+..+...|.+.|++++|+..|+++++..|.++.... +.. ..+. +....+|..++.+|
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~------------~~~-~~~~-------~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSE------------KES-KASE-------SFLLAAFLNLAMCY 327 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCH------------HHH-HHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCCh------------HHH-HHHH-------HHHHHHHHHHHHHH
Confidence 345555566666666666666666666666665532110 000 0000 11134577788888
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHH
Q 047305 646 CQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVH 725 (767)
Q Consensus 646 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 725 (767)
.+.|++++|+..++++++.+ |.++.++..++.+|...|++++|+..|+++++. .|+.......+..++...++ +++
T Consensus 328 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~-~~~ 403 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKE-HNE 403 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHH-HHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHH-HHH
Confidence 88888888888888887776 667777778888888888888888888887763 46655544444444435554 444
Q ss_pred HH-HHHHHHH
Q 047305 726 AY-HLLCRMK 734 (767)
Q Consensus 726 a~-~~~~~~~ 734 (767)
+. .++++|-
T Consensus 404 a~~~~~~~~f 413 (457)
T 1kt0_A 404 RDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHHH
Confidence 33 3444443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.72 E-value=9.3e-08 Score=87.68 Aligned_cols=158 Identities=11% Similarity=-0.058 Sum_probs=112.3
Q ss_pred HhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhh-----cCCCCCccchHHHHHHHhhcCCH
Q 047305 577 CRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDF-----KLNDFQLAPYTIWLIGLCQDGQV 651 (767)
Q Consensus 577 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~p~~~~~~~~l~~~~~~~g~~ 651 (767)
...|++++|.+.++.+....+....++..++..+...|++++|+..+.+... ...|....++..++.+|...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 4679999999965555443335566778899999999999999999888321 12244456799999999999999
Q ss_pred HHHHHHHHHHHHc--CCC----CChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHH---HHHHHHHHhhcCCc
Q 047305 652 KEALNIFSVLVEC--KAI----VTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFI-LRPRV---CNYLLRSLLFSKDN 721 (767)
Q Consensus 652 ~~A~~~~~~~~~~--~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~---~~~l~~~l~~~~~~ 721 (767)
++|+..++++++. ..+ ....++..++.++...|++++|...++++++.... .++.. ....+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 9999999998754 112 12456888999999999999999999999753111 12221 11233333337888
Q ss_pred cHHHHHHHHHHHHH
Q 047305 722 KKVHAYHLLCRMKS 735 (767)
Q Consensus 722 ~~~~a~~~~~~~~~ 735 (767)
+++|...+++..+
T Consensus 163 -~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 -LLEAQQHWLRARD 175 (203)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHH
Confidence 9999999988764
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.6e-07 Score=80.96 Aligned_cols=106 Identities=11% Similarity=-0.117 Sum_probs=87.1
Q ss_pred CCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC---hHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 047305 631 NDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVT---PPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRV 707 (767)
Q Consensus 631 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 707 (767)
.|.+...+..++..+...|++++|+..|+++++.. +.+ ..++..++.+|...|++++|+..++++++.. |+...
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~ 100 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD-ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--GGDVK 100 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--SCCHH
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--ccCHH
Confidence 46677789999999999999999999999999876 444 7889999999999999999999999998854 65444
Q ss_pred -HHHHHHHHhhcCCccHHHHHHHHHHHHHcCCCCCCc
Q 047305 708 -CNYLLRSLLFSKDNKKVHAYHLLCRMKSVGYDLDAC 743 (767)
Q Consensus 708 -~~~l~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 743 (767)
+..+...+. ..|+ +++|...+++.... .|+..
T Consensus 101 ~~~~~a~~~~-~~~~-~~~A~~~~~~al~~--~p~~~ 133 (148)
T 2dba_A 101 ALYRRSQALE-KLGR-LDQAVLDLQRCVSL--EPKNK 133 (148)
T ss_dssp HHHHHHHHHH-HHTC-HHHHHHHHHHHHHH--CSSCH
T ss_pred HHHHHHHHHH-HcCC-HHHHHHHHHHHHHc--CCCcH
Confidence 444444444 7887 99999999998875 46554
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.5e-08 Score=83.20 Aligned_cols=86 Identities=10% Similarity=-0.014 Sum_probs=45.4
Q ss_pred cCChhHHHHHHHHHHhc---cCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHH
Q 047305 579 RRKFSLAFSLWLQYLRD---ISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEAL 655 (767)
Q Consensus 579 ~g~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 655 (767)
.|++++|+..|+++++. .|.++.++..++.+|...|++++|+..+.+... ..|+++.++..++.+|...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVK-QFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46677777777777766 354555555555555555555555555555211 13555555555555555555555555
Q ss_pred HHHHHHHHcC
Q 047305 656 NIFSVLVECK 665 (767)
Q Consensus 656 ~~~~~~~~~~ 665 (767)
..++++++..
T Consensus 82 ~~~~~al~~~ 91 (117)
T 3k9i_A 82 ELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 5555555443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.70 E-value=3.5e-08 Score=83.22 Aligned_cols=109 Identities=13% Similarity=-0.093 Sum_probs=80.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHh
Q 047305 567 AVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLC 646 (767)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~ 646 (767)
..+...+..+.+.|++++|+..|+++++..|.++..- + . ...|.+..+|.+++.++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~---------------a------~--~~~~~~a~a~~n~g~al~ 68 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE---------------A------F--DHAGFDAFCHAGLAEALA 68 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS---------------C------C--CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh---------------h------h--hhccchHHHHHHHHHHHH
Confidence 3445566677889999999999999999888865430 0 0 001222335888888888
Q ss_pred hcCCHHHHHHHHHHHHHc-------CCCCChHhH----HHHHHHHHhcCChhHHHHHHHHHHHC
Q 047305 647 QDGQVKEALNIFSVLVEC-------KAIVTPPSC----VKLIHGLCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 647 ~~g~~~~A~~~~~~~~~~-------~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~ 699 (767)
+.|++++|+..++++++. + |.+...| ...+.++...|++++|+..|+++++.
T Consensus 69 ~Lgr~~eAl~~~~kAL~l~n~~~e~~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 69 GLRSFDEALHSADKALHYFNRRGELN-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHCCTT-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhhccccCC-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 888888888888888877 6 6667777 88888888888888888888888773
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.70 E-value=7.3e-08 Score=80.89 Aligned_cols=96 Identities=9% Similarity=0.026 Sum_probs=46.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC-------ccchHH
Q 047305 568 VYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQ-------LAPYTI 640 (767)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~-------~~~~~~ 640 (767)
.+..++..+...|++++|...|+++++..|.++.++..++.++...|++++|+..+.+.... .|.+ +.++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV-GRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhh-ccccchhHHHHHHHHHH
Confidence 44445555555666666666666655555555444444455555555555554444441110 1111 333445
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHc
Q 047305 641 WLIGLCQDGQVKEALNIFSVLVEC 664 (767)
Q Consensus 641 l~~~~~~~g~~~~A~~~~~~~~~~ 664 (767)
++.+|...|++++|+..|+++.+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 555555555555555555555443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.9e-07 Score=74.64 Aligned_cols=101 Identities=14% Similarity=0.051 Sum_probs=86.8
Q ss_pred CCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHH-
Q 047305 631 NDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILR--PRV- 707 (767)
Q Consensus 631 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~- 707 (767)
.|.++..+..++.++...|++++|+..++++++.. +.++.++..++.++...|++++|+..++++++.. |+ ...
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~ 78 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI--EDEYNKDV 78 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CCTTCHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccchHHH
Confidence 47888889999999999999999999999999987 7788999999999999999999999999999854 65 444
Q ss_pred HHHHHHHHhhcC-CccHHHHHHHHHHHHHc
Q 047305 708 CNYLLRSLLFSK-DNKKVHAYHLLCRMKSV 736 (767)
Q Consensus 708 ~~~l~~~l~~~~-~~~~~~a~~~~~~~~~~ 736 (767)
+..+...+. .. |+ +++|.+.+++....
T Consensus 79 ~~~l~~~~~-~~~~~-~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 79 WAAKADALR-YIEGK-EVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHHT-TCSSC-SHHHHHHHHHHGGG
T ss_pred HHHHHHHHH-HHhCC-HHHHHHHHHHHhhc
Confidence 444444444 78 87 99999999998865
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.7e-08 Score=87.36 Aligned_cols=100 Identities=13% Similarity=-0.057 Sum_probs=80.2
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHc------------------CCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVEC------------------KAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 699 (767)
+...|..+.+.|++++|+..|+++++. + +.+..++..++.+|.+.|++++|+..++++++.
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELD-RKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHH-HTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHH-HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 667788888888888888888888776 4 567788999999999999999999999999985
Q ss_pred CCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCCCCCc
Q 047305 700 GFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCRMKSVGYDLDAC 743 (767)
Q Consensus 700 ~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 743 (767)
. |+.....+.++..+...|+ +++|...+++.... .|+..
T Consensus 93 ~--p~~~~a~~~~g~~~~~~g~-~~~A~~~~~~al~l--~p~~~ 131 (162)
T 3rkv_A 93 E--ETNEKALFRRAKARIAAWK-LDEAEEDLKLLLRN--HPAAA 131 (162)
T ss_dssp S--TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CGGGH
T ss_pred C--CcchHHHHHHHHHHHHHhc-HHHHHHHHHHHHhc--CCCCH
Confidence 4 7755544444444448888 99999999998875 56654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.68 E-value=9.6e-08 Score=99.62 Aligned_cols=141 Identities=12% Similarity=-0.016 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC--------------HhhHHHHHHH
Q 047305 511 NINGALKLFKELQLKGLRP-DSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPS--------------PAVYKSLMTW 575 (767)
Q Consensus 511 ~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~ 575 (767)
++++|+..|+..... .| ....+..+...+.+.|++++|+..|+++++...... ...|..+..+
T Consensus 249 ~~~~A~~~~~~~~~~--~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 249 SFEKAKESWEMDTKE--KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEECCCCGGGSCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHH--HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 344555544443332 22 345688888999999999999999999987421111 3444455555
Q ss_pred HHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHH
Q 047305 576 SCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEA 654 (767)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 654 (767)
|.+.|++++|+..|+++++..|.++.+++.++.+|...|++++|+..+.+.. ...|.+..++..++.++.+.|++++|
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al-~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL-EVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555544444444444444444444444444444321 12344444444444444444444333
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.65 E-value=1.2e-07 Score=79.46 Aligned_cols=107 Identities=10% Similarity=0.064 Sum_probs=89.5
Q ss_pred ccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC-------hHh
Q 047305 600 DDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVT-------PPS 672 (767)
Q Consensus 600 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~ 672 (767)
+..+..++..+...|++++|+..+.+... ..|.++.++..++.+|...|++++|+..++++++.. +.+ +.+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 81 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKE-LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-cccchhHHHHHHH
Confidence 34567789999999999999999998432 258888889999999999999999999999998775 444 778
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 047305 673 CVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNY 710 (767)
Q Consensus 673 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 710 (767)
+..++.+|...|++++|...|+++++.. |++.....
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~ 117 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKK 117 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHH
Confidence 9999999999999999999999998854 66544443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.64 E-value=1e-07 Score=95.97 Aligned_cols=136 Identities=11% Similarity=0.011 Sum_probs=83.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhh
Q 047305 568 VYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQ 647 (767)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 647 (767)
.+..+...+.+.|++++|+..|+++++..+..+ .....+++ ....|.+..+|..++.+|.+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~-----------~~~~~~~~--------~~~~~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR-----------AAAEDADG--------AKLQPVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-----------HHSCHHHH--------GGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc-----------cccChHHH--------HHHHHHHHHHHHHHHHHHHh
Confidence 455667777788888888888888876432211 00011111 01224455567777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHH
Q 047305 648 DGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHA 726 (767)
Q Consensus 648 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a 726 (767)
.|++++|++.++++++.+ |.++.++..++.+|...|++++|+..|+++++.. |+.......+..+....++ .+++
T Consensus 286 ~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--P~~~~~~~~l~~~~~~~~~-~~~a 360 (370)
T 1ihg_A 286 MSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAELLKVKQKIKA-QKDK 360 (370)
T ss_dssp TTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHH-HHHH
T ss_pred ccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHH-HHHH
Confidence 777777777777777765 6667777777777777777777777777777643 5544444444444334444 4443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=9.2e-07 Score=94.17 Aligned_cols=173 Identities=9% Similarity=-0.078 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC----------HHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcC-
Q 047305 512 INGALKLFKELQLKGLRPDSVTYGTLINGLQRVDR----------EEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRR- 580 (767)
Q Consensus 512 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 580 (767)
.++|++.++.+...+.+ +..+|+.-..++...|+ +++++..++.+++.. +.+..+|..-..++.+.|
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 45677777777766322 34456655555555555 777788887777653 445666666666666777
Q ss_pred -ChhHHHHHHHHHHhccCCCccchHHHHHHHHhcC-CHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhc----------
Q 047305 581 -KFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKG-EVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQD---------- 648 (767)
Q Consensus 581 -~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~---------- 648 (767)
+++++.+.++++++.+|.+..+|...+.+....| .++++++.+.++- +.+|.+..+|+..+.++.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I-~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLI-TRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTT-TTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred ccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHH-HHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 5688888888888888888888888888887777 7777777766642 34677777888888877763
Q ss_pred ----CCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhH
Q 047305 649 ----GQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDL 688 (767)
Q Consensus 649 ----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 688 (767)
+.+++|++++++++..+ |.+..+|..+.+++.+.|+.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 56788888888888887 7788888888888888777554
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.61 E-value=2e-07 Score=81.67 Aligned_cols=130 Identities=14% Similarity=-0.025 Sum_probs=73.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhccCCCc------cchHHHHHHHHhcCCHHHHHHHHHHh-hh--c--CCCCCccc
Q 047305 569 YKSLMTWSCRRRKFSLAFSLWLQYLRDISGRD------DESMKSIEEFLQKGEVENAIQGLLEM-DF--K--LNDFQLAP 637 (767)
Q Consensus 569 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~--~--~~p~~~~~ 637 (767)
+..+...+...|++++|...++++++..+... .++..++..+...|++++|+..+.+. .. . ..+....+
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 33344444444444444444444443322211 13334444444445555444444441 10 0 00111335
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHcCC-----CCChHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVECKA-----IVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
+..++.++...|++++|+..++++++... +....++..++.+|...|++++|...++++++
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 77888888888888888888888764310 11244677788888888999999988888865
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.60 E-value=4.2e-08 Score=97.76 Aligned_cols=149 Identities=12% Similarity=0.007 Sum_probs=88.2
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHh
Q 047305 567 AVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLC 646 (767)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~ 646 (767)
..+..+...+.+.|++++|+..|+++++..|.+. .+...|+..++...+. ..+|..++.+|.
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~--------~~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH--------HHTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch--------hhhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 4455677778888999999999999988877654 1234455555543332 124888999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHH
Q 047305 647 QDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHA 726 (767)
Q Consensus 647 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a 726 (767)
+.|++++|+..++++++.+ |.+..++..++.+|...|++++|+..|+++++ +.|+.......+..+........+++
T Consensus 242 ~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998887 77888999999999999999999999999875 44766655555554432333337788
Q ss_pred HHHHHHHHHc
Q 047305 727 YHLLCRMKSV 736 (767)
Q Consensus 727 ~~~~~~~~~~ 736 (767)
..++++|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8888888754
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.59 E-value=3.5e-07 Score=77.13 Aligned_cols=93 Identities=12% Similarity=-0.102 Sum_probs=72.6
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHcCCCC-------Ch-----HhHHHHHHHHHhcCChhHHHHHHHHHHHC-----CCC
Q 047305 640 IWLIGLCQDGQVKEALNIFSVLVECKAIV-------TP-----PSCVKLIHGLCKRGYLDLAMDVFLYTLKN-----GFI 702 (767)
Q Consensus 640 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~ 702 (767)
..|..+.+.|++++|+..|+++++.+ |. +. .+|..++.++.+.|++++|+..++++++. .+.
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~-p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEIS-HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHH-TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC-CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 45667778888888888888887765 33 22 38999999999999999999999999984 115
Q ss_pred CCHHHHH-----HHHHHHhhcCCccHHHHHHHHHHHHH
Q 047305 703 LRPRVCN-----YLLRSLLFSKDNKKVHAYHLLCRMKS 735 (767)
Q Consensus 703 ~~~~~~~-----~l~~~l~~~~~~~~~~a~~~~~~~~~ 735 (767)
|+..... ....++. ..|+ +++|...|++..+
T Consensus 95 pd~~~A~~~~~~~rG~aL~-~lgr-~eEAl~~y~kAle 130 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALD-GLGR-GAEAMPEFKKVVE 130 (159)
T ss_dssp STHHHHHHHHHHHHHHHHH-HTTC-HHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHH-HCCC-HHHHHHHHHHHHh
Confidence 8866544 4555555 8898 9999999999774
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.1e-06 Score=93.49 Aligned_cols=170 Identities=8% Similarity=-0.063 Sum_probs=139.6
Q ss_pred CHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCC----------hhHHHHHHHHHHhccCCCccchHHHHHHHHhcC-
Q 047305 546 REEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRK----------FSLAFSLWLQYLRDISGRDDESMKSIEEFLQKG- 614 (767)
Q Consensus 546 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g- 614 (767)
..++|++.++++++.+ +.+..+|..-..++...|+ ++++.+.++++++.+|.+..+|...+.++.+.|
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Confidence 4468899999998854 3455667666666666777 999999999999999999999999999999999
Q ss_pred -CHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcC-CHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc---------
Q 047305 615 -EVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDG-QVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKR--------- 683 (767)
Q Consensus 615 -~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 683 (767)
+++++++.+.++-. .+|.+..+|+..++++.+.| .++++++.++++++.+ +.+..+|...+.++.+.
T Consensus 123 ~~~~~el~~~~k~l~-~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLE-ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHh-hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 77999998888432 46999999999999999999 9999999999999998 88999999999998874
Q ss_pred -----CChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhhcCCc
Q 047305 684 -----GYLDLAMDVFLYTLKNGFILRPR-VCNYLLRSLLFSKDN 721 (767)
Q Consensus 684 -----g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~ 721 (767)
+.+++|++++++++... |+.. .|.++...+. ..++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~--P~~~saW~y~~~ll~-~~~~ 241 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTD--PNDQSAWFYHRWLLG-RAEP 241 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHC--SSCSHHHHHHHHHHS-CCCC
T ss_pred ccccHHHHHHHHHHHHHHHhhC--CCCccHHHHHHHHHh-cCCC
Confidence 56799999999999855 6654 4666554443 4443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.56 E-value=5.2e-08 Score=79.92 Aligned_cols=93 Identities=11% Similarity=-0.070 Sum_probs=75.9
Q ss_pred hcCCHHHHHHHHHHhhhcC--CCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHH
Q 047305 612 QKGEVENAIQGLLEMDFKL--NDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLA 689 (767)
Q Consensus 612 ~~g~~~~A~~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 689 (767)
..|++++|+..+.+..... +|.++.++..++.+|...|++++|+..|+++++.+ |.++.++..++.+|...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 3578888988888843221 47778889999999999999999999999999987 88899999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHH
Q 047305 690 MDVFLYTLKNGFILRPRV 707 (767)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~ 707 (767)
+..++++++.. |+++.
T Consensus 81 ~~~~~~al~~~--p~~~~ 96 (117)
T 3k9i_A 81 VELLLKIIAET--SDDET 96 (117)
T ss_dssp HHHHHHHHHHH--CCCHH
T ss_pred HHHHHHHHHhC--CCcHH
Confidence 99999998854 55543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.9e-06 Score=89.78 Aligned_cols=165 Identities=5% Similarity=-0.083 Sum_probs=83.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCCH----hhHHHHHHHHHhcCChhHHHHHHHHHHhccCC------Cccc
Q 047305 534 YGTLINGLQRVDREEDAFRIFGQMPQNG-CTPSP----AVYKSLMTWSCRRRKFSLAFSLWLQYLRDISG------RDDE 602 (767)
Q Consensus 534 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~ 602 (767)
+..++..|...|++++|.+++..+...- ..++. .+...+...+...|++++|..++.+++...+. ...+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 3445555555555555555555544310 00111 11222222333445566666666555532111 1223
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHhhhc-----CCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHc--CCCCC----hH
Q 047305 603 SMKSIEEFLQKGEVENAIQGLLEMDFK-----LNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVEC--KAIVT----PP 671 (767)
Q Consensus 603 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~ 671 (767)
+..++..|...|++++|...+.++... ..+....++..++.+|...|++++|..++++++.. ..+.+ ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 345566666666666666655552110 11223345667777777777777777777776432 11111 23
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 672 SCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 672 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
.+..++..+...|++++|...|.++.+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 445556666677777777777766654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.50 E-value=4.7e-07 Score=94.79 Aligned_cols=120 Identities=17% Similarity=0.119 Sum_probs=72.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCh
Q 047305 503 INGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKF 582 (767)
Q Consensus 503 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 582 (767)
...+.+.|++++|++.+++..+.... +...+..+..++.+.|++++|+..++++++.. +.+...+..++.+|.+.|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 34455666677777777666665211 34566666666666666666666666666642 33455666666666666666
Q ss_pred hHHHHHHHHHHhccCCCccchHHHHHH--HHhcCCHHHHHHHHH
Q 047305 583 SLAFSLWLQYLRDISGRDDESMKSIEE--FLQKGEVENAIQGLL 624 (767)
Q Consensus 583 ~~A~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 624 (767)
++|.+.|+++++..|.+..++..++.+ +.+.|++++|++.+.
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666666666666666666655555 556666666666655
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=1.5e-07 Score=79.17 Aligned_cols=110 Identities=11% Similarity=-0.032 Sum_probs=65.9
Q ss_pred HhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHH
Q 047305 577 CRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALN 656 (767)
Q Consensus 577 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 656 (767)
.+.+.+++|++.++++++.+|.++.++..++.++...|+++.+...+ +.+++|+.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al-------------------------~~~~eAi~ 67 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAK-------------------------QMIQEAIT 67 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHH-------------------------HHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhH-------------------------hHHHHHHH
Confidence 35567788888888888888888888888888877776654221110 12455555
Q ss_pred HHHHHHHcCCCCChHhHHHHHHHHHhcC-----------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047305 657 IFSVLVECKAIVTPPSCVKLIHGLCKRG-----------YLDLAMDVFLYTLKNGFILRPRVCNYLLRS 714 (767)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 714 (767)
.|+++++.+ |.+..+|+.++.+|...| ++++|+.+|+++++. .|+...+...+..
T Consensus 68 ~le~AL~ld-P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~ 133 (158)
T 1zu2_A 68 KFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 555555554 445555555555555442 566666666666553 3555544444443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.45 E-value=6.6e-07 Score=90.03 Aligned_cols=100 Identities=10% Similarity=-0.058 Sum_probs=79.6
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHH----------------cCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVE----------------CKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGF 701 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 701 (767)
+..++..+.+.|++++|+..|+++++ .. +.+..++..++.+|.+.|++++|+..++++++.
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~-~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-- 302 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ-PVALSCVLNIGACKLKMSDWQGAVDSCLEALEI-- 302 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH-HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--
Confidence 66778888888888888888888876 44 667889999999999999999999999999975
Q ss_pred CCCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCCCCCc
Q 047305 702 ILRPRVCNYLLRSLLFSKDNKKVHAYHLLCRMKSVGYDLDAC 743 (767)
Q Consensus 702 ~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 743 (767)
.|+.....+.++..+...|+ +++|...+++..+. .|+..
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~-~~eA~~~l~~Al~l--~P~~~ 341 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKE-YDQALADLKKAQEI--APEDK 341 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCH
T ss_pred CchhHHHHHHHHHHHHHccC-HHHHHHHHHHHHHh--CCCCH
Confidence 47655544444444448888 99999999998875 46544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.44 E-value=3.5e-07 Score=91.11 Aligned_cols=147 Identities=8% Similarity=0.006 Sum_probs=58.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHH
Q 047305 498 TYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSC 577 (767)
Q Consensus 498 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 577 (767)
.+..+...+.+.|++++|+..|++.... .|+... +...++.+++...+. ...|..+..+|.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 3444555555566666666666665543 222221 112222333222211 124555666666
Q ss_pred hcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHh-hcCCHHHHHH
Q 047305 578 RRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLC-QDGQVKEALN 656 (767)
Q Consensus 578 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~A~~ 656 (767)
+.|++++|+..|+++++..|.+..+++.++.+|...|++++|+..+.+.. ...|.+..++..++.+.. ..+..+++..
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al-~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQ-KYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT-C----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666655555521 123555555555555422 2344555555
Q ss_pred HHHHHHHc
Q 047305 657 IFSVLVEC 664 (767)
Q Consensus 657 ~~~~~~~~ 664 (767)
.|+++...
T Consensus 321 ~~~~~l~~ 328 (338)
T 2if4_A 321 MYKGIFKG 328 (338)
T ss_dssp --------
T ss_pred HHHHhhCC
Confidence 55555544
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.42 E-value=7.4e-06 Score=85.29 Aligned_cols=166 Identities=8% Similarity=-0.122 Sum_probs=118.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccc------hHHHHHHHHhcCCHHHHHHHHHHh-h----hcCCCCCcc
Q 047305 568 VYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDE------SMKSIEEFLQKGEVENAIQGLLEM-D----FKLNDFQLA 636 (767)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~------~~~l~~~~~~~g~~~~A~~~~~~~-~----~~~~p~~~~ 636 (767)
.+..++..|.+.|++++|.+.+.++++..+..... ...++..+...|++++|+..+.+. . ....+....
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 35678889999999999999999998765554332 234566667789999998888772 1 112233345
Q ss_pred chHHHHHHHhhcCCHHHHHHHHHHHHHcCC-----CCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCH-H---
Q 047305 637 PYTIWLIGLCQDGQVKEALNIFSVLVECKA-----IVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNG-FILRP-R--- 706 (767)
Q Consensus 637 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~-~--- 706 (767)
++..++.+|...|++++|+.+++++..... +....++..++.+|...|++++|..++++++... -.+++ .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 688999999999999999999999864311 1124578889999999999999999999987531 01222 1
Q ss_pred HHHHHHHHHhhcCCccHHHHHHHHHHHH
Q 047305 707 VCNYLLRSLLFSKDNKKVHAYHLLCRMK 734 (767)
Q Consensus 707 ~~~~l~~~l~~~~~~~~~~a~~~~~~~~ 734 (767)
.+...+..+....|+ +++|...+.+..
T Consensus 217 ~~~~~~g~~~~~~~~-y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKD-YKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHTTSSSC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-HHHHHHHHHHHH
Confidence 222234444446676 999988887765
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=4.4e-07 Score=76.32 Aligned_cols=98 Identities=10% Similarity=-0.081 Sum_probs=75.4
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCh----------hHHHHHHHHHHHCCCCCCHH-HHHHHHHH
Q 047305 646 CQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYL----------DLAMDVFLYTLKNGFILRPR-VCNYLLRS 714 (767)
Q Consensus 646 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~-~~~~l~~~ 714 (767)
.+.+.+++|++.++++++.+ |.++..|..++.++...|++ ++|+..|+++++.+ |+.. .+..+..+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld--P~~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID--PKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC--cCcHHHHHHHHHH
Confidence 34567888888888888887 78888888888888887765 59999999999854 7755 45555555
Q ss_pred HhhcC-----------CccHHHHHHHHHHHHHcCCCCCCcchhhhhh
Q 047305 715 LLFSK-----------DNKKVHAYHLLCRMKSVGYDLDACLYPKTKS 750 (767)
Q Consensus 715 l~~~~-----------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 750 (767)
+. +. |+ +++|.+.|++..+. .|+...|...+.
T Consensus 90 y~-~lg~l~P~~~~a~g~-~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 90 YT-SFAFLTPDETEAKHN-FDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HH-HHHHHCCCHHHHHHH-HHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HH-HhcccCcchhhhhcc-HHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 55 44 35 99999999999875 788888766543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.35 E-value=1e-06 Score=77.04 Aligned_cols=139 Identities=15% Similarity=0.022 Sum_probs=72.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCh----hhHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCC-CH
Q 047305 497 ITYNSLINGFCKVGNINGALKLFKELQLKGLR-PDS----VTYGTLINGLQRVDREEDAFRIFGQMPQN----GCTP-SP 566 (767)
Q Consensus 497 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~ 566 (767)
.++..+...+...|++++|+..+++....... ++. .++..+...+...|++++|...++++.+. +..+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 34555566666666666666666665543110 011 23444555555555555555555555431 0000 02
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHh
Q 047305 567 AVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLC 646 (767)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~ 646 (767)
..+..+..++...|++++|...++++++..+.. ...+.....+..++.+|.
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-----------------------------~~~~~~~~~~~~la~~~~ 140 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL-----------------------------KDRIGEGRACWSLGNAYT 140 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----------------------------TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc-----------------------------cchHhHHHHHHHHHHHHH
Confidence 233344444445555555555544443211100 001122345788899999
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 047305 647 QDGQVKEALNIFSVLVEC 664 (767)
Q Consensus 647 ~~g~~~~A~~~~~~~~~~ 664 (767)
..|++++|++.++++++.
T Consensus 141 ~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 141 ALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHTCHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHH
Confidence 999999999999998754
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.3e-06 Score=71.11 Aligned_cols=80 Identities=8% Similarity=-0.071 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHH
Q 047305 584 LAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVE 663 (767)
Q Consensus 584 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 663 (767)
+|++.|+++++..|.++.++..++.+|...|++++|+..+.+... ..|.++.+|..++.+|...|++++|+..|+++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALD-FDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH-HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455566666666666655555555555555555555555555211 2355555555555555555666666655555554
Q ss_pred c
Q 047305 664 C 664 (767)
Q Consensus 664 ~ 664 (767)
.
T Consensus 82 ~ 82 (115)
T 2kat_A 82 A 82 (115)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.32 E-value=1.6e-06 Score=68.42 Aligned_cols=68 Identities=15% Similarity=0.018 Sum_probs=59.3
Q ss_pred CCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047305 631 NDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 631 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 699 (767)
+|+++.++..++.+|...|++++|+..|+++++.+ |.++.++..++.+|...|++++|+..|+++++.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 58888889999999999999999999999999887 778889999999999999999999999998763
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.30 E-value=5e-06 Score=86.15 Aligned_cols=131 Identities=4% Similarity=-0.085 Sum_probs=88.2
Q ss_pred HHhcCCHHHHHHHHHHhhhC-----CC-CC-CHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhc
Q 047305 541 LQRVDREEDAFRIFGQMPQN-----GC-TP-SPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQK 613 (767)
Q Consensus 541 ~~~~~~~~~A~~~~~~~~~~-----~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 613 (767)
+...|++++|+.++++.++. |. .| ...+++.++.+|...|++++|..++++++
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL-------------------- 378 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMV-------------------- 378 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH--------------------
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--------------------
Confidence 45667777777777666541 10 11 24466666777777777777777766554
Q ss_pred CCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHH-----cCCCCChHh---HHHHHHHHHhcCC
Q 047305 614 GEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVE-----CKAIVTPPS---CVKLIHGLCKRGY 685 (767)
Q Consensus 614 g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~---~~~l~~~~~~~g~ 685 (767)
....+.-....|+....+++|+.+|...|++++|+.+++++++ .| +..|.+ ...+..++...|+
T Consensus 379 -------~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG-~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 379 -------DGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHG-PSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp -------HHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-TTSHHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHHH
Confidence 3333333333456666789999999999999999999999863 44 444443 4567778888888
Q ss_pred hhHHHHHHHHHHHC
Q 047305 686 LDLAMDVFLYTLKN 699 (767)
Q Consensus 686 ~~~A~~~~~~~~~~ 699 (767)
+++|..+|+++.+.
T Consensus 451 ~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 451 FRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 89999888888653
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.30 E-value=8.5e-06 Score=78.93 Aligned_cols=145 Identities=10% Similarity=0.019 Sum_probs=106.4
Q ss_pred CCCCHhhHHHHHHHH--Hhc---CChhHHHHHHHHHHhccCCCccchHHHHHHHHhc---C--C--HHHHHH-HHHH-hh
Q 047305 562 CTPSPAVYKSLMTWS--CRR---RKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQK---G--E--VENAIQ-GLLE-MD 627 (767)
Q Consensus 562 ~~~~~~~~~~l~~~~--~~~---g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g--~--~~~A~~-~~~~-~~ 627 (767)
.+.+...|...+.+. ... ....+|+.+|+++++.+|+...++..++.+|... + . ...++. .+.. ..
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 355667777766553 222 3457899999999999999988888776666421 1 1 111111 1111 12
Q ss_pred hcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 047305 628 FKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRV 707 (767)
Q Consensus 628 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 707 (767)
....|.++.+|..++..+...|++++|+..+++++..+ |+...+..+++++...|++++|.+.|+++++.+ |...+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~--P~~~t 345 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR--PGANT 345 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CSHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcCh
Confidence 23458888889999888888899999999999999987 677788899999999999999999999999854 88776
Q ss_pred HHH
Q 047305 708 CNY 710 (767)
Q Consensus 708 ~~~ 710 (767)
+..
T Consensus 346 ~~~ 348 (372)
T 3ly7_A 346 LYW 348 (372)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.27 E-value=4.3e-06 Score=86.63 Aligned_cols=104 Identities=9% Similarity=-0.044 Sum_probs=78.2
Q ss_pred CCCCccchHHHHHHHhhcCCHHHHHHHHHHHHH-----cCCCCCh---HhHHHHHHHHHhcCChhHHHHHHHHHHHC---
Q 047305 631 NDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVE-----CKAIVTP---PSCVKLIHGLCKRGYLDLAMDVFLYTLKN--- 699 (767)
Q Consensus 631 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 699 (767)
.|+...++++|+.+|...|+|++|+.+++++++ .| +..| .+++.|+.+|...|++++|+.+++++++.
T Consensus 347 Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG-~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~ 425 (490)
T 3n71_A 347 NLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYH-HNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLV 425 (490)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 344556799999999999999999999999863 33 3333 45788999999999999999999998762
Q ss_pred CCCCCHHHHHH---HHHHHhhcCCccHHHHHHHHHHHHHc
Q 047305 700 GFILRPRVCNY---LLRSLLFSKDNKKVHAYHLLCRMKSV 736 (767)
Q Consensus 700 ~~~~~~~~~~~---l~~~l~~~~~~~~~~a~~~~~~~~~~ 736 (767)
-+.|+++.... ++.......+. +++|..+++++++.
T Consensus 426 ~lG~~Hp~~~~~~~~l~~~~~e~~~-~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 426 THGPSHPITKDLEAMRMQTEMELRM-FRQNEFMYHKMREA 464 (490)
T ss_dssp HTCTTSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 23377654443 33333335666 89999999999864
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.21 E-value=7.2e-07 Score=72.15 Aligned_cols=88 Identities=9% Similarity=0.049 Sum_probs=45.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC------hHhHHHHHH
Q 047305 605 KSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVT------PPSCVKLIH 678 (767)
Q Consensus 605 ~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~ 678 (767)
.++..+...|++++|+..+.+... ..|.++.++..++.+|...|++++|++.++++++.. |.+ ..++..++.
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~ 86 (111)
T 2l6j_A 9 EQGNSLFKQGLYREAVHCYDQLIT-AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKLQYRLEL 86 (111)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHHHHHHHH
Confidence 344444444444444444444211 134445555566666666666666666666665554 333 445555555
Q ss_pred HHHhcCChhHHHHHHH
Q 047305 679 GLCKRGYLDLAMDVFL 694 (767)
Q Consensus 679 ~~~~~g~~~~A~~~~~ 694 (767)
++...|+.++|+..++
T Consensus 87 ~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 87 AQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHCCCCCSSSSS
T ss_pred HHHHHHhHhhhHhHHH
Confidence 5555555555554443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.18 E-value=7e-07 Score=72.24 Aligned_cols=94 Identities=11% Similarity=-0.062 Sum_probs=64.0
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC------ccchH
Q 047305 566 PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQ------LAPYT 639 (767)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~------~~~~~ 639 (767)
...+..++..+...|++++|+..|+++++..|.++.++..++.++...|++++|+..+.+.. ...|++ ..++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL-RYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TSCSSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HhCCCccHHHHHHHHHH
Confidence 44556666677777777777777777777777777777777777777777777777777632 234665 55566
Q ss_pred HHHHHHhhcCCHHHHHHHHHH
Q 047305 640 IWLIGLCQDGQVKEALNIFSV 660 (767)
Q Consensus 640 ~l~~~~~~~g~~~~A~~~~~~ 660 (767)
.++.++...|++++|+..+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 677777777766666655443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.16 E-value=5.8e-06 Score=63.76 Aligned_cols=62 Identities=16% Similarity=0.201 Sum_probs=33.3
Q ss_pred cchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 636 APYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 636 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
..+..++.++...|++++|+..++++++.. |.++.++..++.+|...|++++|+..++++++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 335555555555555555555555555544 44455555555555555555555555555554
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=2.3e-05 Score=65.98 Aligned_cols=110 Identities=9% Similarity=-0.114 Sum_probs=68.3
Q ss_pred ChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhh----cCCHHHHHH
Q 047305 581 KFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQ----DGQVKEALN 656 (767)
Q Consensus 581 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~ 656 (767)
++++|...|+++.+..... +. ++..|...+..++|++.+.+... ..++.++..|+.+|.. .+++++|+.
T Consensus 10 d~~~A~~~~~~aa~~g~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~---~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMF--GC--LSLVSNSQINKQKLFQYLSKACE---LNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTT--HH--HHHHTCTTSCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHh--hh--HHHHHHcCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 4555555555555543222 22 55555555555556555555322 2344557777777776 677777777
Q ss_pred HHHHHHHcCCCCChHhHHHHHHHHHh----cCChhHHHHHHHHHHHCC
Q 047305 657 IFSVLVECKAIVTPPSCVKLIHGLCK----RGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 700 (767)
+|+++.+.+ ++.+...|+.+|.. .++.++|...|+++.+.|
T Consensus 83 ~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 83 YYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 777777654 45667777777777 777777777777777654
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.13 E-value=7.7e-06 Score=63.03 Aligned_cols=84 Identities=13% Similarity=0.116 Sum_probs=72.8
Q ss_pred CccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 047305 599 RDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIH 678 (767)
Q Consensus 599 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 678 (767)
+...+..++..+...|++++|+..+.+... ..|.++.++..++.+|...|++++|+..++++++.+ |.++.++..++.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALE-LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 456778899999999999999999998432 358888889999999999999999999999999987 778889999998
Q ss_pred HHHhcC
Q 047305 679 GLCKRG 684 (767)
Q Consensus 679 ~~~~~g 684 (767)
++...|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 887654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.11 E-value=1.3e-05 Score=65.14 Aligned_cols=79 Identities=13% Similarity=-0.061 Sum_probs=69.3
Q ss_pred HHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 619 AIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 619 A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
|+..+.+.. ...|.++.++..++.+|...|++++|+..|+++++.+ |.++.++..++.+|...|++++|+..|+++++
T Consensus 4 a~~~~~~al-~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAML-AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHH-TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455555532 2468899999999999999999999999999999987 78889999999999999999999999999987
Q ss_pred C
Q 047305 699 N 699 (767)
Q Consensus 699 ~ 699 (767)
.
T Consensus 82 ~ 82 (115)
T 2kat_A 82 A 82 (115)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.05 E-value=1.2e-05 Score=63.25 Aligned_cols=69 Identities=10% Similarity=0.017 Sum_probs=51.9
Q ss_pred ccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 047305 595 DISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVEC 664 (767)
Q Consensus 595 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 664 (767)
.+|.++.++..++.+|...|++++|+..+.+... ..|.++.+|..++.+|...|++++|++.|+++++.
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVE-TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3577777788888888888888888877777322 34777778888888888888888888888888765
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.00 E-value=5.5e-05 Score=63.56 Aligned_cols=111 Identities=10% Similarity=-0.099 Sum_probs=84.6
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHh----cCCHHHHH
Q 047305 545 DREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQ----KGEVENAI 620 (767)
Q Consensus 545 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~ 620 (767)
+++++|...|++..+.| .+... +..+|...+..++|.+.|+++.+. .++.+.+.++..|.. .+++++|+
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 45677888888877766 33332 666666667777788888888765 567777888888877 78888888
Q ss_pred HHHHHhhhcCCCCCccchHHHHHHHhh----cCCHHHHHHHHHHHHHcC
Q 047305 621 QGLLEMDFKLNDFQLAPYTIWLIGLCQ----DGQVKEALNIFSVLVECK 665 (767)
Q Consensus 621 ~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 665 (767)
+.+.+... ..++.++..|+.+|.. .+++++|+.+|+++.+.|
T Consensus 82 ~~~~~Aa~---~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACG---LNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 88887443 2456678999999998 799999999999999887
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.96 E-value=3.8e-05 Score=58.78 Aligned_cols=69 Identities=9% Similarity=0.016 Sum_probs=57.2
Q ss_pred CCCCccchHHHHHHHhhcCC---HHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047305 631 NDFQLAPYTIWLIGLCQDGQ---VKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 631 ~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 700 (767)
.|+++..+..++.+++..++ .++|..+++++++.+ |.++.++..++..+...|++++|+.+|+++++..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 47778888888888865544 688999999998887 8888888889999999999999999999888754
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=6.9e-05 Score=76.22 Aligned_cols=78 Identities=6% Similarity=-0.169 Sum_probs=56.2
Q ss_pred CCCccchHHHHHHHhhcCCHHHHHHHHHHHHH-----cCCCCCh---HhHHHHHHHHHhcCChhHHHHHHHHHHHC---C
Q 047305 632 DFQLAPYTIWLIGLCQDGQVKEALNIFSVLVE-----CKAIVTP---PSCVKLIHGLCKRGYLDLAMDVFLYTLKN---G 700 (767)
Q Consensus 632 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~ 700 (767)
|....++++|+.+|...|+|++|+.+++++++ .| +..| .+++.|+.+|..+|++++|+.+|+++++. -
T Consensus 337 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG-~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~ 415 (433)
T 3qww_A 337 VYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYP-VYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVA 415 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC-SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 34445688899999999999999999998863 33 3333 35778899999999999999999988652 2
Q ss_pred CCCCHHHHHH
Q 047305 701 FILRPRVCNY 710 (767)
Q Consensus 701 ~~~~~~~~~~ 710 (767)
+.|+++....
T Consensus 416 lG~~Hp~~~~ 425 (433)
T 3qww_A 416 HGKDHPYISE 425 (433)
T ss_dssp TCTTCHHHHH
T ss_pred cCCCChHHHH
Confidence 2355544333
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.73 E-value=2.3e-05 Score=61.49 Aligned_cols=50 Identities=10% Similarity=0.098 Sum_probs=21.3
Q ss_pred HHhcCChhHHHHHHHHHHhccCCCcc-chHHHHHHHHhcCCHHHHHHHHHH
Q 047305 576 SCRRRKFSLAFSLWLQYLRDISGRDD-ESMKSIEEFLQKGEVENAIQGLLE 625 (767)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~ 625 (767)
+.+.|++++|+..|+++++..|.++. ++..++.+|...|++++|+..+.+
T Consensus 10 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 60 (99)
T 2kc7_A 10 LINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQS 60 (99)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444444444444444444444443 333444444444444444333333
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.73 E-value=9.1e-05 Score=57.97 Aligned_cols=61 Identities=13% Similarity=0.157 Sum_probs=43.6
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChH-hHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047305 639 TIWLIGLCQDGQVKEALNIFSVLVECKAIVTPP-SCVKLIHGLCKRGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 639 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 700 (767)
...+..+...|++++|+..++++++.+ |.++. ++..++.+|...|++++|+..|+++++..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 445666777777777777777777765 56666 77777777777777777777777777643
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0011 Score=61.37 Aligned_cols=130 Identities=14% Similarity=0.024 Sum_probs=88.0
Q ss_pred hccCCCccchHHHHHHH---Hh--cCC------HHHHHHHHHHhhhcCCCC--CccchHHHHHHHhh-----cCCHHHHH
Q 047305 594 RDISGRDDESMKSIEEF---LQ--KGE------VENAIQGLLEMDFKLNDF--QLAPYTIWLIGLCQ-----DGQVKEAL 655 (767)
Q Consensus 594 ~~~p~~~~~~~~l~~~~---~~--~g~------~~~A~~~~~~~~~~~~p~--~~~~~~~l~~~~~~-----~g~~~~A~ 655 (767)
+..|++...+++.+.+. .. .|. ...|...+++. ...+|. +..+|..++..|.. .|+.++|.
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerA-leLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~ 224 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERA-CDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAH 224 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHH-HHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHH
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHH-HHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHH
Confidence 45566666665543332 22 232 34555555552 124577 56689999999998 49999999
Q ss_pred HHHHHHHHcCCCCChHhHHHHHHHHHhc-CChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHhhcCCccHHHHHHHHHH
Q 047305 656 NIFSVLVECKAIVTPPSCVKLIHGLCKR-GYLDLAMDVFLYTLKNGFI--LRPRVCNYLLRSLLFSKDNKKVHAYHLLCR 732 (767)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~ 732 (767)
+.|+++++.+...+..++..+++.++.. |+.++|.+++++++..... |+... ..... -++|..++.+
T Consensus 225 ~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~l----an~~~------q~eA~~LL~~ 294 (301)
T 3u64_A 225 TAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKL----LVILS------QKRARWLKAH 294 (301)
T ss_dssp HHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHH----HHHHH------HHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhH----HHHHH------HHHHHHHHHH
Confidence 9999999998323588999999999884 9999999999999987644 33322 22222 4566666666
Q ss_pred HH
Q 047305 733 MK 734 (767)
Q Consensus 733 ~~ 734 (767)
+.
T Consensus 295 ~~ 296 (301)
T 3u64_A 295 VQ 296 (301)
T ss_dssp HH
T ss_pred hH
Confidence 54
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00015 Score=73.74 Aligned_cols=94 Identities=3% Similarity=-0.162 Sum_probs=69.5
Q ss_pred hcCCHHHHHHHHHHhhhC---CCCC----CHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCC
Q 047305 543 RVDREEDAFRIFGQMPQN---GCTP----SPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGE 615 (767)
Q Consensus 543 ~~~~~~~A~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 615 (767)
..|++++|..++++.++. -+.| ...+++.++.+|...|++++|+.++++++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL---------------------- 367 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKII---------------------- 367 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------------
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH----------------------
Confidence 346788888888776541 1112 24577788888989999999999887775
Q ss_pred HHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHH
Q 047305 616 VENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVE 663 (767)
Q Consensus 616 ~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 663 (767)
....+.-....|+....+++|+.+|..+|++++|+.+++++++
T Consensus 368 -----~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 368 -----KPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp -----HHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----HHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 4444443344566667899999999999999999999999863
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00027 Score=72.13 Aligned_cols=76 Identities=16% Similarity=0.022 Sum_probs=53.7
Q ss_pred ccchHHHHHHHhhcCCHHHHHHHHHHHHH-----cCCCCCh---HhHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCC
Q 047305 635 LAPYTIWLIGLCQDGQVKEALNIFSVLVE-----CKAIVTP---PSCVKLIHGLCKRGYLDLAMDVFLYTLKN---GFIL 703 (767)
Q Consensus 635 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~ 703 (767)
..++++++.+|...|+|++|+.+++++++ .| +..| .+++.|+.+|...|++++|+.+++++++. -+.|
T Consensus 329 ~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg-~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~ 407 (429)
T 3qwp_A 329 LKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFP-GSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGR 407 (429)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSC-SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 34588888888888888888888888753 23 3333 34777888888999999999988888652 2236
Q ss_pred CHHHHHHH
Q 047305 704 RPRVCNYL 711 (767)
Q Consensus 704 ~~~~~~~l 711 (767)
+++....+
T Consensus 408 ~Hp~~~~~ 415 (429)
T 3qwp_A 408 EHSLIEDL 415 (429)
T ss_dssp TSHHHHHH
T ss_pred CChHHHHH
Confidence 65544443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00052 Score=69.97 Aligned_cols=108 Identities=7% Similarity=-0.109 Sum_probs=74.0
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhC---CCCC----CHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHH
Q 047305 538 INGLQRVDREEDAFRIFGQMPQN---GCTP----SPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEF 610 (767)
Q Consensus 538 ~~~~~~~~~~~~A~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 610 (767)
+..+...|++++|+.+++++++. -+.| ...++..++.+|...|++++|+.++++++
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L----------------- 356 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTM----------------- 356 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH-----------------
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH-----------------
Confidence 33455667888888888777642 1112 24566777777878888888888876665
Q ss_pred HhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHH-----cCCCCChHhH
Q 047305 611 LQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVE-----CKAIVTPPSC 673 (767)
Q Consensus 611 ~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~ 673 (767)
..+.+.-....|+....+++|+.+|...|++++|+.+++++++ .| +..|.+.
T Consensus 357 ----------~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG-~~Hp~~~ 413 (429)
T 3qwp_A 357 ----------EPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHG-REHSLIE 413 (429)
T ss_dssp ----------HHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-TTSHHHH
T ss_pred ----------HhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC-CCChHHH
Confidence 3444433334566667799999999999999999999999863 45 4555443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00039 Score=53.08 Aligned_cols=68 Identities=9% Similarity=0.096 Sum_probs=44.5
Q ss_pred cCCCccchHHHHHHHHhcCC---HHHHHHHHHH-hhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 047305 596 ISGRDDESMKSIEEFLQKGE---VENAIQGLLE-MDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECK 665 (767)
Q Consensus 596 ~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~-~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 665 (767)
.|+++..+..++.++...++ .++|...+.+ +. .+|+++.++..+|..+...|++++|+..|+++++.+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 45666666666666654333 4666555555 32 357777777777777777777777777777777765
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00074 Score=53.13 Aligned_cols=72 Identities=11% Similarity=-0.129 Sum_probs=58.2
Q ss_pred chHHHHHHHhhcCCHHHHHHHHHHHHHcC------CCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 047305 637 PYTIWLIGLCQDGQVKEALNIFSVLVECK------AIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNY 710 (767)
Q Consensus 637 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 710 (767)
-+..+|..+...|+++.|+.+|+++++.. -.+.+.++..|+.+|.+.|++++|..+++++++. .|+......
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~ 84 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--DPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHh
Confidence 37789999999999999999999987641 1345678899999999999999999999999874 477655433
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00078 Score=55.87 Aligned_cols=79 Identities=9% Similarity=0.030 Sum_probs=63.1
Q ss_pred CCCCccchHHHHHHHhhcC---CHHHHHHHHHHHHHcCCC-CChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH
Q 047305 631 NDFQLAPYTIWLIGLCQDG---QVKEALNIFSVLVECKAI-VTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPR 706 (767)
Q Consensus 631 ~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 706 (767)
.|.+..+...+++++.+.+ +.++++.+++...+.+.| ....+++.++-+|++.|++++|+++++.+++.. |++.
T Consensus 28 ~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie--P~n~ 105 (152)
T 1pc2_A 28 GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE--PQNN 105 (152)
T ss_dssp TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCH
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCH
Confidence 3566777899999999988 677999999999887522 357888899999999999999999999998844 7665
Q ss_pred HHHHH
Q 047305 707 VCNYL 711 (767)
Q Consensus 707 ~~~~l 711 (767)
....+
T Consensus 106 QA~~L 110 (152)
T 1pc2_A 106 QAKEL 110 (152)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00053 Score=56.87 Aligned_cols=89 Identities=11% Similarity=-0.056 Sum_probs=70.1
Q ss_pred ChhHHHHHHHHHHhccCCCccchHHHHHHHHhcC---CHHHHHHHHHHhhhcCCC-CCccchHHHHHHHhhcCCHHHHHH
Q 047305 581 KFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKG---EVENAIQGLLEMDFKLND-FQLAPYTIWLIGLCQDGQVKEALN 656 (767)
Q Consensus 581 ~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~ 656 (767)
....+.+.|.+.++..|.+..+.+.+++++.+.+ +.++++..+.++-....| .....+..|+-+|++.|+|++|++
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 3456667777777778888888899999999988 566898888885444335 456678999999999999999999
Q ss_pred HHHHHHHcCCCCCh
Q 047305 657 IFSVLVECKAIVTP 670 (767)
Q Consensus 657 ~~~~~~~~~~~~~~ 670 (767)
+++++++.. |.+.
T Consensus 93 y~~~lL~ie-P~n~ 105 (152)
T 1pc2_A 93 YVRGLLQTE-PQNN 105 (152)
T ss_dssp HHHHHHHHC-TTCH
T ss_pred HHHHHHhcC-CCCH
Confidence 999999886 5444
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.012 Score=57.12 Aligned_cols=153 Identities=10% Similarity=-0.099 Sum_probs=102.6
Q ss_pred HHHhccCCCccchHHH--HHHHHhcCC---HHHHHHHHHHhhhcCCCCCccchHHHHHHHhhc---C-CH-H--HHH-HH
Q 047305 591 QYLRDISGRDDESMKS--IEEFLQKGE---VENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQD---G-QV-K--EAL-NI 657 (767)
Q Consensus 591 ~~~~~~p~~~~~~~~l--~~~~~~~g~---~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g-~~-~--~A~-~~ 657 (767)
+.....|.++.++... +..+...+. ..+|+..+.+.. ..+|+.+.+|..++.+|... + .. . +++ ..
T Consensus 185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al-~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a 263 (372)
T 3ly7_A 185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIV-QSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTE 263 (372)
T ss_dssp HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHH
Confidence 3456678888888654 444554444 467888888732 24699988888888877532 1 11 1 111 12
Q ss_pred HHHH--HHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHH
Q 047305 658 FSVL--VECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCRMKS 735 (767)
Q Consensus 658 ~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~ 735 (767)
++.. ...+ +.++.++..++..+...|++++|+..+++++..+ |+...+ .++..++.-.|+ +++|.+.+++...
T Consensus 264 ~~a~~a~~~~-~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~-~llG~~~~~~G~-~~eA~e~~~~Alr 338 (372)
T 3ly7_A 264 IDNIVTLPEL-NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNY-VLLGKVYEMKGM-NREAADAYLTAFN 338 (372)
T ss_dssp HHHHHTCGGG-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHH-HHHHHHHHHTTC-HHHHHHHHHHHHH
T ss_pred HHHHHhcccC-CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHH-HHHHHHHHHCCC-HHHHHHHHHHHHh
Confidence 2221 1333 7788889999888888999999999999999875 664433 444555547888 9999999999876
Q ss_pred cCCCCCCcchhhhhhh
Q 047305 736 VGYDLDACLYPKTKSL 751 (767)
Q Consensus 736 ~~~~~~~~~~~~~~~~ 751 (767)
. .|+..+|--+.++
T Consensus 339 L--~P~~~t~~~~~~l 352 (372)
T 3ly7_A 339 L--RPGANTLYWIENG 352 (372)
T ss_dssp H--SCSHHHHHHHHHS
T ss_pred c--CCCcChHHHHhCc
Confidence 5 5666666555443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.88 E-value=0.014 Score=47.41 Aligned_cols=111 Identities=8% Similarity=0.035 Sum_probs=78.0
Q ss_pred CCCHhhHHHHHHHHHhcCCh------hHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCcc
Q 047305 563 TPSPAVYKSLMTWSCRRRKF------SLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLA 636 (767)
Q Consensus 563 ~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~ 636 (767)
+.|..+|-..+....+.|+. +..+++|++++...|+.....+ +.+..+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~w----------------rrYI~L---------- 63 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQN----------------ESFARI---------- 63 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTC----------------HHHHHH----------
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccH----------------HHHHHH----------
Confidence 44677777777777777887 7888888888888777632211 111111
Q ss_pred chHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 047305 637 PYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFI 702 (767)
Q Consensus 637 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 702 (767)
|...+ .+...++.++|.++|+.+++.+ +.=..+|...++--.++|+++.|++++.+++..+..
T Consensus 64 -WIrYA-~~~ei~D~d~aR~vy~~a~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 64 -QVRFA-ELKAIQEPDDARDYFQMARANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp -HHHHH-HHHHHHCGGGCHHHHHHHHHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred -HHHHH-HHHHhcCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 11111 1123379999999999997764 333778888888888999999999999999987633
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0078 Score=55.82 Aligned_cols=82 Identities=7% Similarity=-0.050 Sum_probs=52.6
Q ss_pred hhHHHHHHHHHHhccCC--CccchHHHHHHHHhc-----CCHHHHHHHHHH-hhhcCCCCC-ccchHHHHHHHhhc-CCH
Q 047305 582 FSLAFSLWLQYLRDISG--RDDESMKSIEEFLQK-----GEVENAIQGLLE-MDFKLNDFQ-LAPYTIWLIGLCQD-GQV 651 (767)
Q Consensus 582 ~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~-----g~~~~A~~~~~~-~~~~~~p~~-~~~~~~l~~~~~~~-g~~ 651 (767)
...|...++++++.+|. +..++..++..|... |+.++|.+.|++ +. ..|+. ..++...+..++.. |++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhcCCH
Confidence 45566666666666666 444666666666663 667777666666 33 23643 66677777777764 777
Q ss_pred HHHHHHHHHHHHcC
Q 047305 652 KEALNIFSVLVECK 665 (767)
Q Consensus 652 ~~A~~~~~~~~~~~ 665 (767)
++|.+++++++...
T Consensus 257 ~~a~~~L~kAL~a~ 270 (301)
T 3u64_A 257 AGFDEALDRALAID 270 (301)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCC
Confidence 77777777777654
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0084 Score=47.69 Aligned_cols=80 Identities=10% Similarity=-0.012 Sum_probs=51.7
Q ss_pred CCccchHHHHHHHhhcCCHHH---HHHHHHHHHHcCCC-CChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 047305 633 FQLAPYTIWLIGLCQDGQVKE---ALNIFSVLVECKAI-VTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVC 708 (767)
Q Consensus 633 ~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 708 (767)
.+..+-..++|++.+..+..+ ++.+++...+.+.| ....+...|+-++++.|++++|+++++.+++.. |+....
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~e--P~n~QA 110 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE--PQNNQA 110 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--CCCHHH
Confidence 444456677777777665544 77777777665411 245667777777888888888888888777743 766555
Q ss_pred HHHHHH
Q 047305 709 NYLLRS 714 (767)
Q Consensus 709 ~~l~~~ 714 (767)
..|...
T Consensus 111 ~~Lk~~ 116 (126)
T 1nzn_A 111 KELERL 116 (126)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554433
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.01 Score=46.43 Aligned_cols=75 Identities=9% Similarity=-0.160 Sum_probs=45.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCC------CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHH
Q 047305 533 TYGTLINGLQRVDREEDAFRIFGQMPQNG------CTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKS 606 (767)
Q Consensus 533 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 606 (767)
....+...+...++++.|...++.+.+.. -.+...++..+..++.+.|+++.|..+++++++..|.++.+..++
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 34455555566666666666666554420 123355666667777777777777777777777777776665444
Q ss_pred H
Q 047305 607 I 607 (767)
Q Consensus 607 ~ 607 (767)
.
T Consensus 87 ~ 87 (104)
T 2v5f_A 87 K 87 (104)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.062 Score=60.68 Aligned_cols=46 Identities=15% Similarity=0.134 Sum_probs=26.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 047305 471 YCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKEL 522 (767)
Q Consensus 471 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 522 (767)
....|+++.|.++.+.+ .+...|..+...+.+.|+++.|...|.++
T Consensus 662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 34455566555554322 24556666666666666666666666655
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.12 Score=58.25 Aligned_cols=100 Identities=14% Similarity=0.099 Sum_probs=69.9
Q ss_pred HHHHhcCCHHHHHH-HHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 047305 469 EQYCTAGLIHKAYK-ILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDRE 547 (767)
Q Consensus 469 ~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 547 (767)
......+++++|.+ ++..+ ++......++..+.+.|..++|+++.+. .. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCH
Confidence 34456788888876 44221 1122236677778889999998876532 11 113345678999
Q ss_pred HHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHH
Q 047305 548 EDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQY 592 (767)
Q Consensus 548 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 592 (767)
++|.++.+.+ .+...|..++..+.+.|+++.|+..|.++
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 9999987543 46789999999999999999999988765
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.27 E-value=0.038 Score=43.99 Aligned_cols=100 Identities=10% Similarity=-0.080 Sum_probs=75.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHH---HHHHHHHhhhcCCC-CCccchHHHHHHHhh
Q 047305 572 LMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVEN---AIQGLLEMDFKLND-FQLAPYTIWLIGLCQ 647 (767)
Q Consensus 572 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~p-~~~~~~~~l~~~~~~ 647 (767)
+++.-........+.+.|.+.....+....+.+.+++++.+..+... ++.++.++-....| .....+..|+-++++
T Consensus 7 ~l~~~~~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yk 86 (126)
T 1nzn_A 7 VLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR 86 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 34444445566778888888888778888888999999999887776 88888886544334 344568888999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChHh
Q 047305 648 DGQVKEALNIFSVLVECKAIVTPPS 672 (767)
Q Consensus 648 ~g~~~~A~~~~~~~~~~~~~~~~~~ 672 (767)
.|+|++|+.+++.+++.. |.+.-+
T Consensus 87 lg~Y~~A~~~~~~lL~~e-P~n~QA 110 (126)
T 1nzn_A 87 LKEYEKALKYVRGLLQTE-PQNNQA 110 (126)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred hhhHHHHHHHHHHHHHhC-CCCHHH
Confidence 999999999999999876 545433
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.27 Score=39.01 Aligned_cols=64 Identities=17% Similarity=0.073 Sum_probs=44.9
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFI 702 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 702 (767)
.......+..+|+-++-.+++..++... +++|..+..++.+|.+.|+..+|.+++.++-++|++
T Consensus 94 vd~ALd~lv~~~KkDqLdki~~~~l~n~-~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 94 VNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhccHhHHHHHHHHHhccC-CCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 4444556667777777777777765533 777788888888888888888888888888777643
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.74 Score=39.23 Aligned_cols=98 Identities=18% Similarity=0.204 Sum_probs=43.9
Q ss_pred hcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 047305 110 KVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIK 189 (767)
Q Consensus 110 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 189 (767)
+.|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+... +..+.-.|...|+.+...+
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 345555555544433 2344555555555555555555555544321 2223333344455544444
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHH
Q 047305 190 MLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLK 228 (767)
Q Consensus 190 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 228 (767)
+-+.....| -++....++...|+++++.++|.+
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 433333322 133334444445555555555533
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.25 Score=42.09 Aligned_cols=127 Identities=10% Similarity=0.026 Sum_probs=84.0
Q ss_pred HHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHH
Q 047305 576 SCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEAL 655 (767)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 655 (767)
..++|+++.|.++.+.+ ++...|..++......|+++-|.+.+.+... +..+.-.|.-.|+.++-.
T Consensus 15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 44677888887776554 4566677778888888888888777777541 677777788888887777
Q ss_pred HHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHHH
Q 047305 656 NIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCRM 733 (767)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~ 733 (767)
.+-+.+...| -++.-..++.-.|++++++++|.+. |..|. .++ +.+..|. .+.|.++.+.+
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~---~r~~e----A~~---~A~t~g~-~~~a~~~~~~~ 141 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG---GSLPL----AYA---VAKANGD-EAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT---TCHHH----HHH---HHHHTTC-HHHHHHHHHHT
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC---CChHH----HHH---HHHHcCc-HHHHHHHHHHh
Confidence 7766666554 2244455677889999999988654 32221 112 2224565 67777776664
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.60 E-value=0.12 Score=41.80 Aligned_cols=78 Identities=12% Similarity=0.046 Sum_probs=61.9
Q ss_pred CCCccchHHHHHHHhhcCC---HHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 047305 632 DFQLAPYTIWLIGLCQDGQ---VKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVC 708 (767)
Q Consensus 632 p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 708 (767)
..++.+-..++|++.+..+ ..+++.+++...+.+......+...++-++++.|++++|+++.+.+++. .|+....
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHH
Confidence 4455668899999998864 4678999999987653346778889999999999999999999999985 4876544
Q ss_pred HHH
Q 047305 709 NYL 711 (767)
Q Consensus 709 ~~l 711 (767)
..|
T Consensus 114 ~~L 116 (144)
T 1y8m_A 114 GAL 116 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.45 E-value=8.3e-06 Score=80.07 Aligned_cols=119 Identities=8% Similarity=0.022 Sum_probs=84.9
Q ss_pred CChhhHHHHHHHHhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHH
Q 047305 61 RSFASNSAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVL 140 (767)
Q Consensus 61 ~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll 140 (767)
....+|..+....+..+++.+|.+.|-+. -++..|..++.+..+.|.+++-+..++-.++. ..++..=+.|+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi 123 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELI 123 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHH
Confidence 35678899999988888888776555322 35567888999999999999999988755543 34445556888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 047305 141 NIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEM 194 (767)
Q Consensus 141 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 194 (767)
-+|++.++..+-.+++ . .|+..-...+..-|...|.++.|.-+|..+
T Consensus 124 ~ayAk~~rL~elEefl----~---~~N~A~iq~VGDrcf~e~lYeAAKilys~i 170 (624)
T 3lvg_A 124 FALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 170 (624)
T ss_dssp HHHHTSCSSSTTTSTT----S---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGS
T ss_pred HHHHhhCcHHHHHHHH----c---CCCcccHHHHHHHHHHccCHHHHHHHHHhC
Confidence 9999998865443322 1 366656677777888888888887776643
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=95.27 E-value=0.082 Score=42.15 Aligned_cols=79 Identities=11% Similarity=0.040 Sum_probs=62.2
Q ss_pred CccchHHHHHHHhhcCC---HHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 047305 634 QLAPYTIWLIGLCQDGQ---VKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNY 710 (767)
Q Consensus 634 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 710 (767)
++.+-..++|++.+..+ ..+++.+++.+.+.+......++..++-++++.|++++|+++.+.+++. .|+......
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~--eP~N~QA~~ 116 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNKQVGA 116 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CTTCHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--CCCCHHHHH
Confidence 44558899999998864 4679999999987763345788999999999999999999999999874 487765555
Q ss_pred HHHH
Q 047305 711 LLRS 714 (767)
Q Consensus 711 l~~~ 714 (767)
|...
T Consensus 117 Lk~~ 120 (134)
T 3o48_A 117 LKSM 120 (134)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.13 Score=43.06 Aligned_cols=24 Identities=8% Similarity=-0.038 Sum_probs=11.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHh
Q 047305 534 YGTLINGLQRVDREEDAFRIFGQM 557 (767)
Q Consensus 534 ~~~l~~~~~~~~~~~~A~~~~~~~ 557 (767)
+..+++++...+++..|...|+++
T Consensus 66 l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 66 LVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHH
Confidence 334444455555555555555554
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.15 Score=42.67 Aligned_cols=45 Identities=16% Similarity=-0.076 Sum_probs=25.0
Q ss_pred ChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 047305 669 TPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLL 716 (767)
Q Consensus 669 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~ 716 (767)
+..+...++.||.+.|++++|+.+++.+..+.. .+-.+.+++.|+
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~R---t~kvnm~LakLy 165 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGIPSRQR---TPKINMLLANLY 165 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGC---CHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhc---CHHHHHHHHHHh
Confidence 344556667777777777777777665543321 123444555444
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=94.87 E-value=6 Score=43.79 Aligned_cols=26 Identities=8% Similarity=0.261 Sum_probs=16.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 047305 171 FSLLINGLSKSGKTEVAIKMLDEMTQ 196 (767)
Q Consensus 171 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 196 (767)
|..++.++.+.++.+.+.++|+.+..
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44455556666777777777777653
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.70 E-value=0.32 Score=39.69 Aligned_cols=114 Identities=9% Similarity=0.062 Sum_probs=68.9
Q ss_pred cchHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHcCCCCCHh-hHHHHH------HHHHhcCCHHHHHHHHHHHHH
Q 047305 458 VHDKASLQTMVEQYCTAGLI------HKAYKILMQLAESGNLPDII-TYNSLI------NGFCKVGNINGALKLFKELQL 524 (767)
Q Consensus 458 ~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~-~~~~l~------~~~~~~g~~~~A~~~~~~~~~ 524 (767)
+.+.++|...+...-+.|+. +...++|+++... .+|+.. .|...+ ..+...+++++|.++|+.+..
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45666777777777777777 7777788877665 333321 111111 112344778888888888866
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHH
Q 047305 525 KGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMT 574 (767)
Q Consensus 525 ~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 574 (767)
.+-+. ...|...+..-.+.|+...|++++.+.+..+.+| ...+...+.
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~ 136 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR 136 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence 53333 5556666666677888888888888888765333 334443333
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=94.67 E-value=0.00016 Score=71.24 Aligned_cols=224 Identities=10% Similarity=0.015 Sum_probs=118.1
Q ss_pred hcCCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCChhHHH
Q 047305 39 MKTKNPQVGFRFFIWAAKRKRLRSFASNSAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKVGDCEKAL 118 (767)
Q Consensus 39 ~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 118 (767)
.+.+.++.-.+++.-+++. .+....-+.++-.+++.++..+..+.+. .|+..-...+..-|...|.++.|.
T Consensus 94 ~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAK 164 (624)
T 3lvg_A 94 NTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAK 164 (624)
T ss_dssp TTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSS
T ss_pred HhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHH
Confidence 3344555555555544333 2344444455555666665543322221 233334445666666666666666
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 047305 119 ESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRG 198 (767)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 198 (767)
-+|..+.. |..|..++.+.|+++.|.+.-.+ ..+..+|..+-.+|...+.+..|...--.+.-.
T Consensus 165 ilys~isN---------~akLAstLV~L~~yq~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh- 228 (624)
T 3lvg_A 165 LLYNNVSN---------FGRLASTLVHLGEYQAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH- 228 (624)
T ss_dssp TTGGGSCC---------CTTTSSSSSSCSGGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-
T ss_pred HHHHhCcc---------HHHHHHHHHHHHHHHHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc-
Confidence 66654432 22233334455555544432211 245667777777787777777765544433321
Q ss_pred CCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCC------C
Q 047305 199 ILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKD-GFV------P 271 (767)
Q Consensus 199 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~------~ 271 (767)
..-...++.-|-..|.+++-+.+++.-... -......|+-|.-.|++- +.++..+.++..-.+ +++ -
T Consensus 229 ----adeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE 302 (624)
T 3lvg_A 229 ----ADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAE 302 (624)
T ss_dssp ----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHT
T ss_pred ----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 222334555667778888888888777632 234667788777777764 334433333322111 111 1
Q ss_pred CcccHHHHHHHHHhcCCHHHHH
Q 047305 272 RLGSYSCLIDGLFRAKRYDEAY 293 (767)
Q Consensus 272 ~~~~~~~li~~~~~~~~~~~A~ 293 (767)
....|..++-.|..-.+++.|.
T Consensus 303 ~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 303 QAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp TTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHhhHHHHHHHHhcchhHHHHH
Confidence 2455667777777777776654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.13 Score=55.56 Aligned_cols=59 Identities=17% Similarity=0.011 Sum_probs=50.3
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTL 697 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 697 (767)
+..=+..+...|+++-|+++.++++... |.+..+|..|+.+|...|+++.|+-.++.+.
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3333556677899999999999999886 8889999999999999999999999998873
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=94.10 E-value=1.5 Score=43.84 Aligned_cols=117 Identities=15% Similarity=0.060 Sum_probs=76.3
Q ss_pred hcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHH
Q 047305 578 RRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNI 657 (767)
Q Consensus 578 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 657 (767)
..|+.+.|.+.+.+++.......-.-.. ...-.......+.+... .+...++..+...|++++|+..
T Consensus 127 ~~~~~~~a~~~l~~Al~L~rG~~L~~~~------~~~w~~~~r~~l~~~~~-------~a~~~~~~~~l~~g~~~~a~~~ 193 (388)
T 2ff4_A 127 AAGRFEQASRHLSAALREWRGPVLDDLR------DFQFVEPFATALVEDKV-------LAHTAKAEAEIACGRASAVIAE 193 (388)
T ss_dssp HTTCHHHHHHHHHHHHTTCCSSTTGGGT------TSTTHHHHHHHHHHHHH-------HHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhcCCCCCCCCC------chhHHHHHHHHHHHHHH-------HHHHHHHHHHHHCCCHHHHHHH
Confidence 3577888888888888654333211100 00001111122333211 1255667778888999999998
Q ss_pred HHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHHHH
Q 047305 658 FSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLK-----NGFILRPRVC 708 (767)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~ 708 (767)
++.+.... |-+...+..+..+|.+.|+..+|.+.|++..+ .|+.|.+.+-
T Consensus 194 l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 194 LEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 88888876 77888888899999999999999998887654 3778877653
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=93.83 E-value=0.43 Score=38.10 Aligned_cols=78 Identities=9% Similarity=0.012 Sum_probs=52.7
Q ss_pred CCCCChhhHHHHHHHHHhcCCH---HHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccc
Q 047305 526 GLRPDSVTYGTLINGLQRVDRE---EDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDE 602 (767)
Q Consensus 526 ~~~p~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 602 (767)
+-.|+..+--.++.++.++.+. .+++.+++.+.+.+..-....+-.+.-++.+.|++++|..+.+.+++..|.+..+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 3356666666677777776654 3577788777765421223444455556778888888888888888888888765
Q ss_pred h
Q 047305 603 S 603 (767)
Q Consensus 603 ~ 603 (767)
.
T Consensus 115 ~ 115 (134)
T 3o48_A 115 G 115 (134)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.83 E-value=0.87 Score=36.87 Aligned_cols=76 Identities=8% Similarity=-0.007 Sum_probs=51.7
Q ss_pred CCChhhHHHHHHHHHhcCCH---HHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccch
Q 047305 528 RPDSVTYGTLINGLQRVDRE---EDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDES 603 (767)
Q Consensus 528 ~p~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 603 (767)
.|+..+-..++.++.++.+. .+++.+++.+.+.+..-.....-.+.-++.+.|++++|..+.+.+++..|.+..+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 46666666777777777654 35777888777643222333344455557788888888888888888888887654
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=92.20 E-value=3.2 Score=41.06 Aligned_cols=97 Identities=10% Similarity=0.034 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC---hhhHHHHHHHHHhc-CCHHHHHHHHHHhhhCCCCCCHhhH--
Q 047305 497 ITYNSLINGFCKVGNINGALKLFKELQLK-GLRPD---SVTYGTLINGLQRV-DREEDAFRIFGQMPQNGCTPSPAVY-- 569 (767)
Q Consensus 497 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~---~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~-- 569 (767)
.....|...|.+.|+.++..+++...... +.-|- ......+++.+... +..+.-.++..+.++-. ..+..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 44566778888888888888877766432 00111 12344455555432 23333344444443310 0111111
Q ss_pred ----HHHHHHHHhcCChhHHHHHHHHHHh
Q 047305 570 ----KSLMTWSCRRRKFSLAFSLWLQYLR 594 (767)
Q Consensus 570 ----~~l~~~~~~~g~~~~A~~~~~~~~~ 594 (767)
..++..|...|++.+|.+++.++++
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~ 127 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLR 127 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 1445556666666666666655554
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.66 E-value=0.58 Score=50.63 Aligned_cols=43 Identities=16% Similarity=0.119 Sum_probs=24.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 047305 672 SCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLL 716 (767)
Q Consensus 672 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~ 716 (767)
=|..||.+..+.+.+++|.+.|+..+.. .=++..+..|+..+.
T Consensus 615 EWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~ 657 (754)
T 4gns_B 615 EWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYL 657 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHH
Confidence 3556666666666666666666666542 244455555665555
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.02 E-value=13 Score=37.74 Aligned_cols=186 Identities=10% Similarity=0.076 Sum_probs=117.6
Q ss_pred cCCHHHHHHHHHHHHHC-----CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCCCHhhHHHHH----HHHHh
Q 047305 509 VGNINGALKLFKELQLK-----GLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQN-GCTPSPAVYKSLM----TWSCR 578 (767)
Q Consensus 509 ~g~~~~A~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~----~~~~~ 578 (767)
.|++++|++.+-.+.+. +..........++..|...++++...+.+..+.+. |..+ .....++ .....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk--~ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLK--LSIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSH--HHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHhc
Confidence 37889999887766642 23334556788889999999999988888776543 3222 2222333 33333
Q ss_pred cCChhHHHHHHHHHHh---ccCCCc--------cchHHHHHHHHhcCCHHHHHHHHHHhhhcCC-CCC----ccchHHHH
Q 047305 579 RRKFSLAFSLWLQYLR---DISGRD--------DESMKSIEEFLQKGEVENAIQGLLEMDFKLN-DFQ----LAPYTIWL 642 (767)
Q Consensus 579 ~g~~~~A~~~~~~~~~---~~p~~~--------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-p~~----~~~~~~l~ 642 (767)
....+.... ...+. .....- .....++..|...|++.+|...+.++..... ..+ ...+..-+
T Consensus 107 ~~~~d~~~~--~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~ 184 (445)
T 4b4t_P 107 SKSLDLNTR--ISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQM 184 (445)
T ss_dssp HCTTHHHHH--HHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred CCchhHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 333332211 12222 111111 1124578899999999999999999543211 111 23567778
Q ss_pred HHHhhcCCHHHHHHHHHHHHH--cCCCCCh----HhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 643 IGLCQDGQVKEALNIFSVLVE--CKAIVTP----PSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 643 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
..|...+++.+|..++.++.. ...++++ ..+...+..+...+++.+|...|.++..
T Consensus 185 rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 185 ELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 888999999999999999742 1112222 3456677888889999999999988864
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=90.95 E-value=11 Score=35.74 Aligned_cols=80 Identities=8% Similarity=-0.035 Sum_probs=44.4
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhc---CCHHHHHHHHHHhhhcCCCCCccchHH
Q 047305 564 PSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQK---GEVENAIQGLLEMDFKLNDFQLAPYTI 640 (767)
Q Consensus 564 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~p~~~~~~~~ 640 (767)
-++.....++..|.+.|++.+|...|- -...+++..+..+..-.... |...++ ..+..
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i---~~~~~s~~~~a~~l~~w~~~~~~~~~~e~----------------dlf~~ 192 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM---LGTHDSMIKYVDLLWDWLCQVDDIEDSTV----------------AEFFS 192 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH---TSCHHHHHHHHHHHHHHHHHTTCCCHHHH----------------HHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH---hCCCccHHHHHHHHHHHHHhcCCCCcchH----------------HHHHH
Confidence 367778888888888888888887762 11111233333332222222 333332 22222
Q ss_pred H-HHHHhhcCCHHHHHHHHHHHH
Q 047305 641 W-LIGLCQDGQVKEALNIFSVLV 662 (767)
Q Consensus 641 l-~~~~~~~g~~~~A~~~~~~~~ 662 (767)
. +--|...|+...|..+++...
T Consensus 193 RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 193 RLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHH
Confidence 2 224556788888888888764
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.22 E-value=15 Score=37.30 Aligned_cols=191 Identities=13% Similarity=0.095 Sum_probs=116.1
Q ss_pred CCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 047305 427 GELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGF 506 (767)
Q Consensus 427 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 506 (767)
|++++|++.+..+++.. ...............++..+...|+++...+.+..+...... .......++..+
T Consensus 30 ~~~~~a~e~ll~lEK~~--------r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~ 100 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKT--------RQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKV 100 (445)
T ss_dssp HHHHHHHHHHHHHHHHH--------SSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh--------hhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHH
Confidence 56777777665554210 122344556777888999999999999998888766543222 122223333322
Q ss_pred ----HhcCCHHHH--HHHHHHHHH--CC-CCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC--CCCCC---HhhH
Q 047305 507 ----CKVGNINGA--LKLFKELQL--KG-LRP---DSVTYGTLINGLQRVDREEDAFRIFGQMPQN--GCTPS---PAVY 569 (767)
Q Consensus 507 ----~~~g~~~~A--~~~~~~~~~--~~-~~p---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~ 569 (767)
......+.. ..+.+.... .| +.. .......|...+...|++.+|..++..+... +.... ...+
T Consensus 101 ~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~ 180 (445)
T 4b4t_P 101 MEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFI 180 (445)
T ss_dssp HHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHH
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 222322221 111111110 01 111 1123356788899999999999999998642 22221 4566
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh---ccCCCcc----chHHHHHHHHhcCCHHHHHHHHHHh
Q 047305 570 KSLMTWSCRRRKFSLAFSLWLQYLR---DISGRDD----ESMKSIEEFLQKGEVENAIQGLLEM 626 (767)
Q Consensus 570 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~ 626 (767)
...++.|...+++..|..++.++.. ..+..+. .+...+..+...+++.+|.+.|.+.
T Consensus 181 l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 181 LEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 6778889999999999999998752 2233332 2235677888899999998888874
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=89.94 E-value=4.9 Score=46.81 Aligned_cols=159 Identities=11% Similarity=0.026 Sum_probs=99.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchh--------hhhhcc-
Q 047305 383 ILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTL--------FLRLSQ- 453 (767)
Q Consensus 383 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------~~~~~~- 453 (767)
.++..+.+.+..+.+.++..-. +.++..--.+..++...|++++|.++|.+...+..... ...+..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 4566677777777776644322 23555555667788999999999999988753221110 000000
Q ss_pred CCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 047305 454 GGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDI----ITYNSLINGFCKVGNINGALKLFKELQLKGLRP 529 (767)
Q Consensus 454 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 529 (767)
......-...|..++..+.+.|.++.+.++-+.+.+.....+. ..|..+...+...|++++|...+-.+.....
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-- 969 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-- 969 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--
Confidence 0111122345677788888888888888888777654322222 2577788888888899988888877776533
Q ss_pred ChhhHHHHHHHHHhcCCHH
Q 047305 530 DSVTYGTLINGLQRVDREE 548 (767)
Q Consensus 530 ~~~~~~~l~~~~~~~~~~~ 548 (767)
-...+..++..++..|..+
T Consensus 970 r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHhCCChh
Confidence 2445666666666655543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=89.63 E-value=4.8 Score=46.88 Aligned_cols=164 Identities=10% Similarity=0.062 Sum_probs=95.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhc
Q 047305 534 YGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQK 613 (767)
Q Consensus 534 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 613 (767)
...++..+...+.++.+.++..-. +.++...-.++.+|..+|++++|.+.|.++............
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~--------- 880 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFA--------- 880 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCS---------
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhh---------
Confidence 344556667777777666655433 223333345566677888888888888776533222211110
Q ss_pred CCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChH----hHHHHHHHHHhcCChhHH
Q 047305 614 GEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPP----SCVKLIHGLCKRGYLDLA 689 (767)
Q Consensus 614 g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A 689 (767)
..... ..+.... .....-+..|..++..+.+.|.++.++++-+.+++...+.++. .|..+...+...|++++|
T Consensus 881 -~~~~~-~~~~~~~-~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~A 957 (1139)
T 4fhn_B 881 -VLREF-QEIAEKY-HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAA 957 (1139)
T ss_dssp -SHHHH-HHHHHTT-TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGG
T ss_pred -hhccc-ccccccc-cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHH
Confidence 00000 0111100 0111223457788888888899999999998887654233321 466788888899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 047305 690 MDVFLYTLKNGFILRPRVCNYLLRSLL 716 (767)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~l~~~l~ 716 (767)
...+-.+..... -......++..++
T Consensus 958 y~aL~~~pd~~~--r~~cLr~LV~~lc 982 (1139)
T 4fhn_B 958 HVALMVLSTTPL--KKSCLLDFVNQLT 982 (1139)
T ss_dssp GHHHHHHHHSSS--CHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHH--HHHHHHHHHHHHH
Confidence 888877654332 2334445555555
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=89.60 E-value=1.8 Score=39.60 Aligned_cols=119 Identities=13% Similarity=0.117 Sum_probs=74.3
Q ss_pred HHHHHhcCCHHHHHHHHHH-hhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 047305 607 IEEFLQKGEVENAIQGLLE-MDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGY 685 (767)
Q Consensus 607 ~~~~~~~g~~~~A~~~~~~-~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 685 (767)
+....+.|..++|++.+.. +. ..|.+...-..+...+|-.|+|++|.+-++...+.+ |+...-..+..-+.+
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR--~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~--p~~~~~a~~yr~lI~--- 76 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVK--- 76 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHH---
T ss_pred HHHHHhCCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHHHH---
Confidence 3456778999999888887 44 359999888899999999999999999999998875 433222111111111
Q ss_pred hhHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHhh-cCCccHHHHHHHHHHHHHc
Q 047305 686 LDLAMDVFLYTLKNGFIL-----RPRVCNYLLRSLLF-SKDNKKVHAYHLLCRMKSV 736 (767)
Q Consensus 686 ~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~l~~-~~~~~~~~a~~~~~~~~~~ 736 (767)
|+..=++....+..| .+.-...++.++.. ..|+ .++|..+-.++.+.
T Consensus 77 ---aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~-~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 77 ---AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQD-YEQVSELALQIEEL 129 (273)
T ss_dssp ---HHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCC-HHHHHHHHHHHHhc
Confidence 222222232322222 22333445555543 3566 88888888877654
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=89.43 E-value=7.1 Score=31.23 Aligned_cols=67 Identities=19% Similarity=0.126 Sum_probs=40.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 047305 342 DTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGC 409 (767)
Q Consensus 342 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 409 (767)
+...+...+..+...|+-++-.+++..++.. .+|++...-.+..+|.+.|+..+|.+++.+.-+.|+
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 3344455556666666666666666665443 235566666666677777777777777666666654
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=87.75 E-value=1.7 Score=43.28 Aligned_cols=70 Identities=11% Similarity=0.103 Sum_probs=55.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHH-----HcCCCCChHhHH
Q 047305 604 MKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLV-----ECKAIVTPPSCV 674 (767)
Q Consensus 604 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~~~ 674 (767)
..++..+...|++++|+..+..+. ..+|.+...+..++.+|.+.|+..+|++.|++.. +.|+.|++.+-.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~-~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALT-FEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 345677778899999888887753 2468888889999999999999999999999874 468888876544
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=86.59 E-value=26 Score=34.53 Aligned_cols=299 Identities=10% Similarity=-0.019 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCC
Q 047305 414 GMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTA-GLIHKAYKILMQLAESGN 492 (767)
Q Consensus 414 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~ 492 (767)
.....+...|.+.|+.++..+++..... .+.. -...........+++.+... +..+.-.++..+..+...
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~----~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~ 90 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRP-----FLSS----ISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK 90 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTT-----GGGG----SCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHH----hchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 3456678888889999888888877631 0000 11123344556667766653 333444444444433210
Q ss_pred CCCHhhH------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh-----hHHHHHHHHHhcCCHHHHHHHHHHhhhC-
Q 047305 493 LPDIITY------NSLINGFCKVGNINGALKLFKELQLKGLRPDSV-----TYGTLINGLQRVDREEDAFRIFGQMPQN- 560 (767)
Q Consensus 493 ~~~~~~~------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-----~~~~l~~~~~~~~~~~~A~~~~~~~~~~- 560 (767)
. +..+| ..++..|...|++.+|.+++.++.+.--+.|.. .+..-+..|...+++.++..++......
T Consensus 91 ~-~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~ 169 (394)
T 3txn_A 91 Q-EKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTA 169 (394)
T ss_dssp H-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence 0 11223 257888999999999999999988642222222 3445556778899999999999887542
Q ss_pred -CCCCCHhhHH----HHHHHHH-hcCChhHHHHHHHHHHhccCCCccc-----hHHHHHHHHhcCCHHHHHHHHHH-hhh
Q 047305 561 -GCTPSPAVYK----SLMTWSC-RRRKFSLAFSLWLQYLRDISGRDDE-----SMKSIEEFLQKGEVENAIQGLLE-MDF 628 (767)
Q Consensus 561 -~~~~~~~~~~----~l~~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~~~~~-~~~ 628 (767)
.+.+++.+.. +-+..+. ..++|.+|...|-++.+....-... ...++-+....++..+--..+.. ...
T Consensus 170 ~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~ 249 (394)
T 3txn_A 170 NAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAI 249 (394)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHH
T ss_pred ccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhcccccc
Confidence 2323333222 2233356 7899999999998887654432211 11122222223332221111111 111
Q ss_pred c-CCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 047305 629 K-LNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRV 707 (767)
Q Consensus 629 ~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 707 (767)
. ..|. ...+..+..+ ...+++.+...+++..... +..|+....++-..+-+. .+.++ .++ +.|-..+
T Consensus 250 ~~~~pe-i~~l~~L~~a-~~~~dl~~f~~iL~~~~~~-l~~D~~l~~h~~~L~~~I--r~~~L---~~i----~~pYsrI 317 (394)
T 3txn_A 250 TYSGRD-IDAMKSVAEA-SHKRSLADFQAALKEYKKE-LAEDVIVQAHLGTLYDTM--LEQNL---CRI----IEPYSRV 317 (394)
T ss_dssp TTCSHH-HHHHHHHHHH-HHTTCHHHHHHHHHHSTTT-TTTSHHHHHHHHHHHHHH--HHHHH---HHH----HTTCSEE
T ss_pred ccCCcc-HHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-HhcChHHHHHHHHHHHHH--HHHHH---HHH----hHhhcee
Confidence 1 1122 1224444444 4456777776666665432 355654333222222111 11111 122 2344333
Q ss_pred -HHHHHHHHhhcCCccHHHHHHHHHHHHHcCC
Q 047305 708 -CNYLLRSLLFSKDNKKVHAYHLLCRMKSVGY 738 (767)
Q Consensus 708 -~~~l~~~l~~~~~~~~~~a~~~~~~~~~~~~ 738 (767)
+..+...+ .-. .+++...+-+|...|-
T Consensus 318 sl~~iA~~l--~ls--~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 318 QVAHVAESI--QLP--MPQVEKKLSQMILDKK 345 (394)
T ss_dssp EHHHHHHHH--TCC--HHHHHHHHHHHHHTTS
T ss_pred eHHHHHHHH--CcC--HHHHHHHHHHHHHCCC
Confidence 33344333 333 5889999999886653
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=84.18 E-value=46 Score=35.25 Aligned_cols=202 Identities=10% Similarity=0.009 Sum_probs=116.5
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 047305 474 AGLIHKAYKILMQLAESGNLPDIITY----NSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREED 549 (767)
Q Consensus 474 ~g~~~~A~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 549 (767)
..+.+.|...+....+.... +.... ..++..+...+...++...+...... .++.......+....+.|+++.
T Consensus 227 r~d~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 227 RQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHH
T ss_pred hcCHHHHHHHHHhhhhccCC-CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHH
Confidence 34889999999888654322 33222 22333333445345666666665544 2344444444455567799999
Q ss_pred HHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhh-
Q 047305 550 AFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDF- 628 (767)
Q Consensus 550 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 628 (767)
|...|..|.... .....-.--+..++.+.|+.++|..+|.++.+. ..++.+. +..+.|.... ...
T Consensus 304 a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~-----~~fYg~l-Aa~~Lg~~~~-------~~~~ 369 (618)
T 1qsa_A 304 LNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ-----RGFYPMV-AAQRIGEEYE-------LKID 369 (618)
T ss_dssp HHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-----CSHHHHH-HHHHTTCCCC-------CCCC
T ss_pred HHHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC-----CChHHHH-HHHHcCCCCC-------CCCC
Confidence 999999887532 123333445566778899999999999998752 2343322 1112221000 000
Q ss_pred cCCCCCc-----cchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHH
Q 047305 629 KLNDFQL-----APYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLY 695 (767)
Q Consensus 629 ~~~p~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 695 (767)
...+... ..-...+..+...|....|...+..+.+. .++.-...++......|..+.++....+
T Consensus 370 ~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~~~~ 438 (618)
T 1qsa_A 370 KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIA 438 (618)
T ss_dssp CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 0001000 01234456678889999999888887754 2334445667777788888887765543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=84.11 E-value=57 Score=36.28 Aligned_cols=258 Identities=10% Similarity=-0.021 Sum_probs=116.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------CCCHHHHHHHHHH
Q 047305 352 GFCDLGLLDQARSLQVEIWKRD--SLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGC-------FPSVGMFNALIDG 422 (767)
Q Consensus 352 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~~~~l~~~ 422 (767)
+....|+.+++..++...+..+ ..+....-..+.-+....|...++..++........ .+....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 3445677777777666655421 112223333344445555555566666666554311 0011111222222
Q ss_pred H--HHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHH
Q 047305 423 L--CKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYN 500 (767)
Q Consensus 423 ~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 500 (767)
+ ...++ +++...+..+.....+ .........++..+...|+.+....++..+.+.. ..+..-..
T Consensus 463 la~~GS~~-eev~e~L~~~L~dd~~------------~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~a 528 (963)
T 4ady_A 463 LAAMGSAN-IEVYEALKEVLYNDSA------------TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGL 528 (963)
T ss_dssp HHSTTCCC-HHHHHHHHHHHHTCCH------------HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHH
T ss_pred HHhcCCCC-HHHHHHHHHHHhcCCH------------HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHH
Confidence 2 22333 3444444444311110 0111233344555556677666666666655432 11222223
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHh
Q 047305 501 SLINGFCKVGNINGALKLFKELQLKGLRPDSV--TYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCR 578 (767)
Q Consensus 501 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 578 (767)
.+.-++...|+.+.+..+.+.+.... .|... ....+.-+|+..|+.....++++.+.... ..+..-...+.-++..
T Consensus 529 algLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~ 606 (963)
T 4ady_A 529 AVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVL 606 (963)
T ss_dssp HHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhc
Confidence 33344446677777777766666531 11111 11233345666777666666777776531 2222222222223444
Q ss_pred cCChhHHHHHHHHHHhccCCCccchHHHHHHHHh--cCCH-HHHHHHHHHhh
Q 047305 579 RRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQ--KGEV-ENAIQGLLEMD 627 (767)
Q Consensus 579 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~-~~A~~~~~~~~ 627 (767)
.|+.+.+..++..+.+. .++.+....+.++.. .|+. .+++..+..+.
T Consensus 607 ~g~~e~v~rlv~~L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 607 LRDYTTVPRIVQLLSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp SSSCSSHHHHTTTGGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 56655555555444332 234444433333322 2222 45666666654
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=84.11 E-value=9.7 Score=34.84 Aligned_cols=48 Identities=17% Similarity=0.224 Sum_probs=21.5
Q ss_pred hcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHH
Q 047305 578 RRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLE 625 (767)
Q Consensus 578 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 625 (767)
+.|++++|++....-++..|.|......++..++-.|++++|.+.+.-
T Consensus 9 ~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~ 56 (273)
T 1zbp_A 9 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQ 56 (273)
T ss_dssp TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444433
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=83.02 E-value=8.8 Score=28.77 Aligned_cols=32 Identities=25% Similarity=0.284 Sum_probs=12.7
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 047305 127 FDCQPDVYIYNAVLNIAFRKQLFLLALAVYYE 158 (767)
Q Consensus 127 ~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 158 (767)
..+-|++....+.+++|.+.+++..|.++++-
T Consensus 39 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~ 70 (109)
T 1v54_E 39 YDLVPEPKIIDAALRACRRLNDFASAVRILEV 70 (109)
T ss_dssp SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 33334444444444444444444444443333
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=82.90 E-value=33 Score=32.52 Aligned_cols=110 Identities=13% Similarity=0.146 Sum_probs=54.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH----HHHHHHCCCCCCHHHHHHHHHHH
Q 047305 278 CLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKL----LSDMRERGIVPDTYCYNALIKGF 353 (767)
Q Consensus 278 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~~~ 353 (767)
++..-|.+.+++++|.+++..-. ..+.+.|+...|-++ ++-+.+.+.+++......++..+
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34555666677777766654322 122344554444333 33344456666666666666555
Q ss_pred HhcCCHH-HHHHHHHHHH----hCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047305 354 CDLGLLD-QARSLQVEIW----KRD--SLPNTHTFTILICGMCRNGMVDDAQKLFN 402 (767)
Q Consensus 354 ~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 402 (767)
......+ .-.++++.++ +.+ ..-++.....+...|.+.|++.+|...|-
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 4422111 0111222221 121 12355666666667777777777666553
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=82.72 E-value=6 Score=29.63 Aligned_cols=44 Identities=14% Similarity=0.185 Sum_probs=20.6
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHH
Q 047305 187 AIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMK 230 (767)
Q Consensus 187 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 230 (767)
..+-++.+...++.|++....+.+++|.+.+++..|.++|+-.+
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 29 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=82.44 E-value=35 Score=32.57 Aligned_cols=109 Identities=12% Similarity=0.070 Sum_probs=53.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH----HHHHHCCCCCCHHHHHHHHHHH
Q 047305 278 CLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLL----SDMRERGIVPDTYCYNALIKGF 353 (767)
Q Consensus 278 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~~~~~~l~~~~ 353 (767)
++..-|.+.+++++|.+++..-. ..+.+.|+...+.++. +-+.+.++++|......++..+
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34555667777777777654322 1233344444433333 3334456666666655555555
Q ss_pred HhcCCHH-HHHHHHHHHH----hC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047305 354 CDLGLLD-QARSLQVEIW----KR--DSLPNTHTFTILICGMCRNGMVDDAQKLF 401 (767)
Q Consensus 354 ~~~~~~~-~a~~~~~~~~----~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 401 (767)
.....-+ .-..+.+.++ +. ...-++.....+...|.+.+++.+|...|
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 4433211 0011111111 11 12335556666666677777777766665
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=81.72 E-value=22 Score=29.67 Aligned_cols=87 Identities=13% Similarity=0.046 Sum_probs=45.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCC----------------CC
Q 047305 606 SIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAI----------------VT 669 (767)
Q Consensus 606 l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----------------~~ 669 (767)
+.-.+.-.|++..++-++.++. ..++..--.-+|.+.+++.+|+..++++++-.+. .|
T Consensus 39 ~~I~LyyngEY~R~Lf~L~~lN------T~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~D 112 (242)
T 3kae_A 39 MSIVLYLNGEYTRALFHLHKLN------TCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGD 112 (242)
T ss_dssp HHHHHHHTTCHHHHHHHHHTCC------BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTC
T ss_pred hhhhhhhcchHhHHHHHHHhcc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccch
Confidence 3444445555555554444321 1122222233455556666666666666532222 11
Q ss_pred -hHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 670 -PPSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 670 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
...++.++..+...|+.++|+.++...-.
T Consensus 113 kEfFy~l~a~lltq~g~r~EaI~y~~~Sf~ 142 (242)
T 3kae_A 113 EEFFESLLGDLCTLSGYREEGIGHYVRSFG 142 (242)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHhhhHhhhhcC
Confidence 22355667777777777888777776544
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=81.12 E-value=60 Score=34.39 Aligned_cols=118 Identities=13% Similarity=0.034 Sum_probs=71.6
Q ss_pred CCHHHHHHHHHHhhcCCCchhhhhhccCCCCcch--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 047305 427 GELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHD--KASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLIN 504 (767)
Q Consensus 427 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 504 (767)
.+.+.|...+...... ...... ......++..+...+...++...+....... .+.....-.+.
T Consensus 228 ~d~~~A~~~~~~~~~~------------~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r 293 (618)
T 1qsa_A 228 QDAENARLMIPSLAQA------------QQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVR 293 (618)
T ss_dssp HCHHHHHHHHHHHHHH------------TTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHH
T ss_pred cCHHHHHHHHHhhhhc------------cCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHH
Confidence 4788999988777410 111111 1122233333444553556667776655442 33333333344
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 047305 505 GFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQ 559 (767)
Q Consensus 505 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 559 (767)
...+.|+++.|...|+.|..... ......--+..++...|+.++|..+|+.+..
T Consensus 294 ~Alr~~d~~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 294 MALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 44577999999999998865321 1333455667788899999999999999874
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 767 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 5e-04 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.001 | |
| d1dcea1 | 334 | a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr | 6e-04 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.8 bits (94), Expect = 5e-04
Identities = 48/340 (14%), Positives = 104/340 (30%), Gaps = 14/340 (4%)
Query: 108 YYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPN 167
Y+ GD E A ++ + + + + +I F+ + + +K N P
Sbjct: 9 EYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PL 65
Query: 168 IV-TFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLF 226
+ +S L N + G+ + AI+ + + + + +
Sbjct: 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125
Query: 227 LKMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRA 286
++ + + L +A L + F ++S L
Sbjct: 126 SALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAV---AWSNLGCVFNAQ 182
Query: 287 KRYDEAYAWYRKMFEEKIEPDVV-LYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYC 345
A + K ++P+ + Y + L EA A+
Sbjct: 183 GEIWLAIHHFEKAVT--LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVV 239
Query: 346 YNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKME 405
+ L + + GL+D A + + L + G V +A+ +N
Sbjct: 240 HGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTAL 298
Query: 406 KAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNP 445
+ C N L + + G +E+A + Y+ + P
Sbjct: 299 R-LCPTHADSLNNLANIKREQGNIEEA-VRLYRKALEVFP 336
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.3 bits (90), Expect = 0.001
Identities = 54/353 (15%), Positives = 109/353 (30%), Gaps = 18/353 (5%)
Query: 98 SDVFFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYY 157
+ V +L S +++ +++ + + P + + L ++++ L
Sbjct: 33 TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQ---LQEAI 87
Query: 158 EMVKLNCLPNIVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQIN 217
E + IN + + G
Sbjct: 88 EHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKA 147
Query: 218 RADEAYRLFLKMKDSGCSPDFV-AYNALLNGFCKLRRVDEALALL-RSFEKDGFVPRLGS 275
+K P+F A++ L F + A+ ++ D +
Sbjct: 148 LGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD--A 205
Query: 276 YSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMR 335
Y L + L A+ +D A A Y + VV + E G + A+
Sbjct: 206 YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGN-LACVYYEQGLIDLAIDTYRRAI 264
Query: 336 ERGIVPDTY-CYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMV 394
E + P Y L + G + +A + + G +
Sbjct: 265 E--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI-KREQGNI 321
Query: 395 DDAQKLFNK-MEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPT 446
++A +L+ K +E F + + L L + G+L++A L+ YK I +PT
Sbjct: 322 EEAVRLYRKALEVFPEFAAA--HSNLASVLQQQGKLQEA-LMHYKEAIRISPT 371
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.4 bits (93), Expect = 6e-04
Identities = 23/204 (11%), Positives = 53/204 (25%), Gaps = 10/204 (4%)
Query: 108 YYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPN 167
+ + LE + E D + A LA ++ N N
Sbjct: 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SN 177
Query: 168 IVTFSLLINGLSKSGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFL 227
++ L + + ++ + D++ +
Sbjct: 178 YSSWHYRSCLLPQLHPQPDSGPQGRLPEN-----VLLKELELVQNAFFTDPNDQSAWFYH 232
Query: 228 KMKDSGCSPDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAK 287
+ P F + L+ E+ L+ E + L + L+ L
Sbjct: 233 RWLLGRAEPLF-RCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLL 290
Query: 288 RYDEAYAWYRKMFEEKIEPDVVLY 311
E ++ + + ++P Y
Sbjct: 291 YEKETLQYFSTL--KAVDPMRAAY 312
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 767 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.95 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.95 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.73 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.71 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.47 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.47 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.4 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.35 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.35 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.33 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.3 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.23 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.2 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.19 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.14 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.03 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.02 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.0 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.98 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.98 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.85 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.83 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.82 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.81 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.81 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.8 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.76 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.74 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.73 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.7 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.68 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.67 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.62 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.61 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.6 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.59 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.58 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.58 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.52 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.51 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.43 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.41 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.3 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.28 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.23 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.21 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.18 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.09 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.05 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.01 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.96 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.83 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.78 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.62 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.19 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.73 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.72 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.5 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.1 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.67 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.16 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 87.88 | |
| d1bpoa1 | 157 | Clathrin heavy-chain linker domain {Rat (Rattus no | 84.95 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 82.92 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=3.8e-24 Score=219.25 Aligned_cols=361 Identities=13% Similarity=0.069 Sum_probs=177.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 047305 281 DGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLD 360 (767)
Q Consensus 281 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 360 (767)
..+.+.|++++|...++++.+..+. +...+..+...+.+.|++++|...+++..+..+. +..++..+...+...|+++
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhcccc
Confidence 3444555555555555555544322 3444555555555555555555555555444222 3444555555555555555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 047305 361 QARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKME 440 (767)
Q Consensus 361 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 440 (767)
+|...+....+... .+..............+....+............. ...............+....+...+
T Consensus 85 ~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---- 158 (388)
T d1w3ba_ 85 EAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACY---- 158 (388)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHH----
T ss_pred cccccccccccccc-ccccccccccccccccccccccccccccccccccc-cccccccccccccccchhhhhHHHH----
Confidence 55555555544432 22222222333333333333333333333222211 2222222333333334444443333
Q ss_pred cCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 047305 441 IGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFK 520 (767)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 520 (767)
....... +.+...+..+...+...|++++|...++
T Consensus 159 --------------------------------------------~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 193 (388)
T d1w3ba_ 159 --------------------------------------------LKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFE 193 (388)
T ss_dssp --------------------------------------------HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred --------------------------------------------HHhhccC-cchhHHHHhhcccccccCcHHHHHHHHH
Confidence 3333221 1133444444555555555555555555
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCc
Q 047305 521 ELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRD 600 (767)
Q Consensus 521 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 600 (767)
+....... +...+..+...+...|++++|...+++....+ +.....+..++.++.+.|++++|+..|+++++..|.++
T Consensus 194 ~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 271 (388)
T d1w3ba_ 194 KAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFP 271 (388)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCH
T ss_pred HHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 55544211 23345555555555555555555555555432 33344455555555555666666666666666666665
Q ss_pred cchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 047305 601 DESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGL 680 (767)
Q Consensus 601 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 680 (767)
.++..++.++...|++++|++.+..... ..|.+...+..++.++...|++++|++.|+++++.. |.++.++..++.+|
T Consensus 272 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 349 (388)
T d1w3ba_ 272 DAYCNLANALKEKGSVAEAEDCYNTALR-LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVL 349 (388)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhhc-cCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 5555666666666666666555555321 235555555666666666666666666666665554 45555556666666
Q ss_pred HhcCChhHHHHHHHHHHH
Q 047305 681 CKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 681 ~~~g~~~~A~~~~~~~~~ 698 (767)
...|++++|+..|+++++
T Consensus 350 ~~~g~~~~A~~~~~~al~ 367 (388)
T d1w3ba_ 350 QQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HTTTCCHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666666654
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=6.5e-24 Score=217.51 Aligned_cols=367 Identities=13% Similarity=0.038 Sum_probs=257.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 047305 316 RGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVD 395 (767)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 395 (767)
..+.+.|++++|.+.++++.+..+. +...+..+...+...|++++|...++.+++..+ .+..++..+...|.+.|+++
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHhhhhcccc
Confidence 3344555555555555555443221 344444455555555555555555555544432 23344444444555555555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcC
Q 047305 396 DAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAG 475 (767)
Q Consensus 396 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 475 (767)
+|+..+....+.... +.. ............+
T Consensus 85 ~A~~~~~~~~~~~~~-~~~------------------------------------------------~~~~~~~~~~~~~ 115 (388)
T d1w3ba_ 85 EAIEHYRHALRLKPD-FID------------------------------------------------GYINLAAALVAAG 115 (388)
T ss_dssp HHHHHHHHHHHHCTT-CHH------------------------------------------------HHHHHHHHHHHHS
T ss_pred ccccccccccccccc-ccc------------------------------------------------ccccccccccccc
Confidence 555555444443221 222 2222222233333
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 047305 476 LIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFG 555 (767)
Q Consensus 476 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~ 555 (767)
....+........... .................+....+...+........ -+...+..+...+...|++++|...++
T Consensus 116 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~ 193 (388)
T d1w3ba_ 116 DMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFE 193 (388)
T ss_dssp CSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred cccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhhccCc-chhHHHHhhcccccccCcHHHHHHHHH
Confidence 3333333333333332 22344455556667788888889888888877632 245678888899999999999999999
Q ss_pred HhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCc
Q 047305 556 QMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQL 635 (767)
Q Consensus 556 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~ 635 (767)
++++.. +.+...+..++.++...|++++|...|++..+..|.....+..++.++.+.|++++|+..+.+.. ...|.++
T Consensus 194 ~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~p~~~ 271 (388)
T d1w3ba_ 194 KAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI-ELQPHFP 271 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTCSSCH
T ss_pred HHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCCCH
Confidence 998753 44677888999999999999999999999999999999999999999999999999999998842 2469999
Q ss_pred cchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047305 636 APYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSL 715 (767)
Q Consensus 636 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l 715 (767)
.++..++.+|...|++++|++.++++.... |.+...+..++.++...|++++|+..|+++++. .|+.......++..
T Consensus 272 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~ 348 (388)
T d1w3ba_ 272 DAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASV 348 (388)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 999999999999999999999999999886 888999999999999999999999999999864 47755544444444
Q ss_pred hhcCCccHHHHHHHHHHHHHcCCCCCCc
Q 047305 716 LFSKDNKKVHAYHLLCRMKSVGYDLDAC 743 (767)
Q Consensus 716 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 743 (767)
+...|+ +++|...+++..+. .|+..
T Consensus 349 ~~~~g~-~~~A~~~~~~al~l--~P~~~ 373 (388)
T d1w3ba_ 349 LQQQGK-LQEALMHYKEAIRI--SPTFA 373 (388)
T ss_dssp HHTTTC-CHHHHHHHHHHHTT--CTTCH
T ss_pred HHHcCC-HHHHHHHHHHHHHh--CCCCH
Confidence 448888 99999999998864 67654
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=6.6e-17 Score=159.91 Aligned_cols=230 Identities=13% Similarity=0.005 Sum_probs=192.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 047305 464 LQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQR 543 (767)
Q Consensus 464 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 543 (767)
....+..+...|++++|...|+++.+..+. +..+|..++.++...|++++|+..+++..+.... +...+..++.++..
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~ 99 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTN 99 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-cccccccccccccc
Confidence 346678889999999999999999987533 6788999999999999999999999999987432 56678888999999
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCHh----------------hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCc--cchHH
Q 047305 544 VDREEDAFRIFGQMPQNGCTPSPA----------------VYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRD--DESMK 605 (767)
Q Consensus 544 ~~~~~~A~~~~~~~~~~~~~~~~~----------------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~--~~~~~ 605 (767)
.|++++|.+.++++.... |+.. ........+...+.+.+|.+.|.++++..|... .++..
T Consensus 100 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~ 177 (323)
T d1fcha_ 100 ESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 177 (323)
T ss_dssp TTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred cccccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchh
Confidence 999999999999987632 2210 111122234456788999999999999888754 45678
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 047305 606 SIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGY 685 (767)
Q Consensus 606 l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 685 (767)
++.++...|++++|+..+.+... ..|+++.+|..++.+|...|++++|++.|+++++.+ |.++.++..+|.+|...|+
T Consensus 178 l~~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~ 255 (323)
T d1fcha_ 178 LGVLFNLSGEYDKAVDCFTAALS-VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGA 255 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHhhhhcccccccc-cccccccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHHHHHHHHCCC
Confidence 89999999999999999998422 358899999999999999999999999999999987 7889999999999999999
Q ss_pred hhHHHHHHHHHHHC
Q 047305 686 LDLAMDVFLYTLKN 699 (767)
Q Consensus 686 ~~~A~~~~~~~~~~ 699 (767)
+++|+..|+++++.
T Consensus 256 ~~~A~~~~~~al~l 269 (323)
T d1fcha_ 256 HREAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999873
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=8.4e-16 Score=151.80 Aligned_cols=255 Identities=13% Similarity=-0.014 Sum_probs=202.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh
Q 047305 418 ALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDII 497 (767)
Q Consensus 418 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 497 (767)
.....+.+.|++++|+..|+++. ...|.+..++..++.++...|++++|...|+++.+..+ .+..
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al--------------~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~ 88 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAV--------------QQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQT 88 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH--------------HSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH--------------HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-cccc
Confidence 45667889999999999999986 33456788999999999999999999999999988753 3678
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh----------------HHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 047305 498 TYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVT----------------YGTLINGLQRVDREEDAFRIFGQMPQNG 561 (767)
Q Consensus 498 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~----------------~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 561 (767)
.|..++.+|...|++++|.+.++.+.... |+... ....+..+...+.+.+|...+.++++..
T Consensus 89 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~ 166 (323)
T d1fcha_ 89 ALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD 166 (323)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred ccccccccccccccccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHh
Confidence 88899999999999999999999998752 22111 1111223345567788999998887643
Q ss_pred C-CCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHH
Q 047305 562 C-TPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTI 640 (767)
Q Consensus 562 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~ 640 (767)
. ..+..++..++.++...|++++|+..|+++++..|.++.++..++.+|...|++++|++.+.+.. +..|+++.+|..
T Consensus 167 p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~~~a~~~ 245 (323)
T d1fcha_ 167 PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRAL-ELQPGYIRSRYN 245 (323)
T ss_dssp TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHH
T ss_pred hcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHH-HHhhccHHHHHH
Confidence 2 34567788888999999999999999999999999999999999999999999999999999832 235999999999
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHcCCCCChH-----------hHHHHHHHHHhcCChhHHHH
Q 047305 641 WLIGLCQDGQVKEALNIFSVLVECKAIVTPP-----------SCVKLIHGLCKRGYLDLAMD 691 (767)
Q Consensus 641 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~g~~~~A~~ 691 (767)
+|.+|.+.|++++|+..|+++++.. |.+.. +|..+..++...|+.+.+..
T Consensus 246 lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 246 LGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHH-HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999999998764 33332 33445556655666554443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=1.7e-12 Score=125.72 Aligned_cols=198 Identities=9% Similarity=-0.025 Sum_probs=117.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCCCHhhHHHHHHHH
Q 047305 498 TYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVD-REEDAFRIFGQMPQNGCTPSPAVYKSLMTWS 576 (767)
Q Consensus 498 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 576 (767)
.++.+...+.+.+.+++|+.+++++++..+. +...|+....++...| ++++|+..++.+++.. +.+..+|.....++
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHH
Confidence 3444445555566666666666666665222 3335555555555544 3666666666665542 33455666666666
Q ss_pred HhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCC------
Q 047305 577 CRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQ------ 650 (767)
Q Consensus 577 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~------ 650 (767)
.+.|++++|++.++++++.+|.+..++..++.++...|++++|++.+.+.- ..+|.+..+|+.++.++.+.++
T Consensus 123 ~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al-~~~p~n~~a~~~r~~~l~~~~~~~~~~~ 201 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLL-KEDVRNNSVWNQRYFVISNTTGYNDRAV 201 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHH-HHCCccHHHHHHHHHHHHHccccchhhh
Confidence 666666666666666666666666666666666666666666666666631 1246666666666666555444
Q ss_pred HHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 047305 651 VKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 651 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 700 (767)
+++|++.+.++++.+ |.+..+|..++.++...| .+++.+.++++++..
T Consensus 202 ~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~ 249 (315)
T d2h6fa1 202 LEREVQYTLEMIKLV-PHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQ 249 (315)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHT
T ss_pred hHHhHHHHHHHHHhC-CCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhC
Confidence 456677777766665 566666666665544433 466666666665533
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=2.6e-12 Score=124.44 Aligned_cols=233 Identities=9% Similarity=0.024 Sum_probs=188.4
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 047305 460 DKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVG-NINGALKLFKELQLKGLRPDSVTYGTLI 538 (767)
Q Consensus 460 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 538 (767)
...++..+...+.+.+.+++|++.++++++.++. +...|+....++...| ++++|+..++.......+ +..+|..+.
T Consensus 42 ~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~ 119 (315)
T d2h6fa1 42 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR 119 (315)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHh
Confidence 3567778888899999999999999999998543 7778999998888876 589999999999987543 677899999
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCC---
Q 047305 539 NGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGE--- 615 (767)
Q Consensus 539 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~--- 615 (767)
..+.+.|++++|+..+.++++.. +.+...|..++.++.+.|++++|++.|+++++.+|.+..++..++.++...+.
T Consensus 120 ~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~ 198 (315)
T d2h6fa1 120 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYND 198 (315)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccch
Confidence 99999999999999999999864 55688999999999999999999999999999999999999999988877665
Q ss_pred ---HHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCC-CChHhHHHHHHHHHhc--CChhHH
Q 047305 616 ---VENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAI-VTPPSCVKLIHGLCKR--GYLDLA 689 (767)
Q Consensus 616 ---~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~--g~~~~A 689 (767)
+++|++.+.+.- ...|.+..+|+.++.++...| .+++.+.++++.+.... .++..+..++.+|... +..+.+
T Consensus 199 ~~~~~~ai~~~~~al-~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~ 276 (315)
T d2h6fa1 199 RAVLEREVQYTLEMI-KLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 276 (315)
T ss_dssp HHHHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hhhhHHhHHHHHHHH-HhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHH
Confidence 678888887732 235999999999998876554 68899999998776532 2355666677777543 444555
Q ss_pred HHHHHHHH
Q 047305 690 MDVFLYTL 697 (767)
Q Consensus 690 ~~~~~~~~ 697 (767)
...+++++
T Consensus 277 ~~~~~ka~ 284 (315)
T d2h6fa1 277 EDILNKAL 284 (315)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.40 E-value=2.4e-12 Score=126.92 Aligned_cols=213 Identities=7% Similarity=-0.117 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCChhhHH-HHHHHHHhcCCHHHHHHH
Q 047305 477 IHKAYKILMQLAESGNLPDIITYNSLINGFCKVG--NINGALKLFKELQLKGLRPDSVTYG-TLINGLQRVDREEDAFRI 553 (767)
Q Consensus 477 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~A~~~ 553 (767)
+++|+..++.+.+.. +.+...|..+..++...+ +.++|+..++.+.....+ +...+. .....+...+.+++|+..
T Consensus 89 ~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~ 166 (334)
T d1dcea1 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 166 (334)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHH
Confidence 344444455444442 224444554444444433 255566566555554221 233322 233444555556666666
Q ss_pred HHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 047305 554 FGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDF 633 (767)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~ 633 (767)
++.+++.+ +.+...|..+..++.+.|++++|...+.++++..|.... ....+...+..+++...+.+.. ...|.
T Consensus 167 ~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~a~~~~~~~l-~~~~~ 240 (334)
T d1dcea1 167 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELE----LVQNAFFTDPNDQSAWFYHRWL-LGRAE 240 (334)
T ss_dssp HHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHH----HHHHHHHHCSSCSHHHHHHHHH-HSCCC
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHH----HHHHHHHhcchhHHHHHHHHHH-HhCcc
Confidence 66555543 234555555555555666665555555544444443222 1222333344444444444421 12355
Q ss_pred CccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 634 QLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 634 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
+...+..++..+...|++++|+..+.+..+.+ |.+..++..++.+|...|++++|+++|+++++
T Consensus 241 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 241 PLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp CSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55555566666666666666666666665554 44555566666666666666666666666655
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.35 E-value=3.5e-10 Score=112.58 Aligned_cols=272 Identities=12% Similarity=-0.054 Sum_probs=142.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcc
Q 047305 384 LICGMCRNGMVDDAQKLFNKMEKAGCFPS----VGMFNALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVH 459 (767)
Q Consensus 384 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (767)
....+...|++++|+.++++..+.....+ ..++..+...+...|++++|...|++..... ........
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~--------~~~~~~~~ 89 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMA--------RQHDVWHY 89 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------HHTTCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--------HhhcchHH
Confidence 44556677888888888887766532212 2355666777778888888888887663100 00011112
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---
Q 047305 460 DKASLQTMVEQYCTAGLIHKAYKILMQLAES----GNLPD---IITYNSLINGFCKVGNINGALKLFKELQLKGLRP--- 529 (767)
Q Consensus 460 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--- 529 (767)
....+..+...+...|++..+...+.+.... ..... ...+..+...+...|+++.+...+..........
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 169 (366)
T d1hz4a_ 90 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ 169 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhh
Confidence 2334455566666777777777766655431 11111 1234445566667777777777777666532111
Q ss_pred -ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC--CCCCC----HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccc
Q 047305 530 -DSVTYGTLINGLQRVDREEDAFRIFGQMPQN--GCTPS----PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDE 602 (767)
Q Consensus 530 -~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 602 (767)
....+......+...+....+...+.+.... ..... ...+......+...|++++|...+.+.++..|.+...
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 249 (366)
T d1hz4a_ 170 QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF 249 (366)
T ss_dssp GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchH
Confidence 1223444445566667777766666655431 11111 2233344445556666666666666666554443322
Q ss_pred h----HHHHHHHHhcCCHHHHHHHHHHhh-----hcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHH
Q 047305 603 S----MKSIEEFLQKGEVENAIQGLLEMD-----FKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVE 663 (767)
Q Consensus 603 ~----~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 663 (767)
. ..++.++...|++++|...+.+.. ....|....++..++.+|...|++++|++.++++++
T Consensus 250 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 250 LQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2 234555555555555555544421 111233333455555555555555555555555543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.35 E-value=9.3e-12 Score=117.68 Aligned_cols=223 Identities=12% Similarity=-0.082 Sum_probs=159.2
Q ss_pred HHHHHHHHHHHHHcCCCC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 047305 477 IHKAYKILMQLAESGNLP---DIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRI 553 (767)
Q Consensus 477 ~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~ 553 (767)
.+.++..++++....... ...+|..+..+|.+.|++++|+..|++.+..... +..+|..+..++...|++++|+..
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhhh
Confidence 455666666665542211 2346777888999999999999999999987433 567899999999999999999999
Q ss_pred HHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCC
Q 047305 554 FGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDF 633 (767)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~ 633 (767)
|+++++.. +.+..++..++.+|...|++++|.+.|+++++..|.+......++..+...+..+.+........ ...+.
T Consensus 94 ~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 171 (259)
T d1xnfa_ 94 FDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE-KSDKE 171 (259)
T ss_dssp HHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH-HSCCC
T ss_pred hhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhh-ccchh
Confidence 99999854 34567888899999999999999999999999999998888777777777776665533333332 22222
Q ss_pred CccchHHHHHHHhhc----CCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 047305 634 QLAPYTIWLIGLCQD----GQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRV 707 (767)
Q Consensus 634 ~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 707 (767)
... + .+...+... +.++.+...+....... +....++..+|.+|...|++++|+..|++++.. .|+..+
T Consensus 172 ~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~ 244 (259)
T d1xnfa_ 172 QWG-W-NIVEFYLGNISEQTLMERLKADATDNTSLA-EHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHNFV 244 (259)
T ss_dssp STH-H-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTTCH
T ss_pred hhh-h-hHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHH
Confidence 221 2 233333222 22344444444433332 334567888999999999999999999999874 476543
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.33 E-value=5.3e-12 Score=124.36 Aligned_cols=230 Identities=5% Similarity=-0.154 Sum_probs=174.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHhhhCCCCCCHhhH-HHHHHHHHhcCCh
Q 047305 506 FCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVD--REEDAFRIFGQMPQNGCTPSPAVY-KSLMTWSCRRRKF 582 (767)
Q Consensus 506 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~ 582 (767)
+...|++++|+.+++.+.....+ +...|..+..++...+ ++++|+..+.++++.. +++...+ ......+...+++
T Consensus 83 ~~~~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~ 160 (334)
T d1dcea1 83 EESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAP 160 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhcccc
Confidence 34566788999999999887433 5566777777766655 5899999999998864 3344544 4455667788999
Q ss_pred hHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHH
Q 047305 583 SLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLV 662 (767)
Q Consensus 583 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 662 (767)
++|+..++++++.+|.+..++..++.++...|++++|...+.+... ..|. .......+...+..+++...+.+.+
T Consensus 161 ~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~----~~~~~~~~~~l~~~~~a~~~~~~~l 235 (334)
T d1dcea1 161 AEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN-VLLK----ELELVQNAFFTDPNDQSAWFYHRWL 235 (334)
T ss_dssp HHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH-HHHH----HHHHHHHHHHHCSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHH-hHHH----HHHHHHHHHHhcchhHHHHHHHHHH
Confidence 9999999999999999999999999999999999988655554211 1122 2334445667788899999999998
Q ss_pred HcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCCCCC
Q 047305 663 ECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKVHAYHLLCRMKSVGYDLDA 742 (767)
Q Consensus 663 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~ 742 (767)
... ++++..+..++.++...|+.++|...+.+++..+ |+.......++..+...|+ +++|.+.+++..+. -|+.
T Consensus 236 ~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~-~~eA~~~~~~ai~l--dP~~ 309 (334)
T d1dcea1 236 LGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPEN--KWCLLTIILLMRALDPLLY-EKETLQYFSTLKAV--DPMR 309 (334)
T ss_dssp HSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC--HHHHHHHHHHHHHHCTGGG-HHHHHHHHHHHHHH--CGGG
T ss_pred HhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC--chHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHH--Cccc
Confidence 887 7778888889999999999999999999987543 6655555555555557887 99999999999875 5664
Q ss_pred c-chhhh
Q 047305 743 C-LYPKT 748 (767)
Q Consensus 743 ~-~~~~~ 748 (767)
. .|..+
T Consensus 310 ~~y~~~L 316 (334)
T d1dcea1 310 AAYLDDL 316 (334)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4 44443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=4.4e-10 Score=111.81 Aligned_cols=272 Identities=12% Similarity=-0.027 Sum_probs=195.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcCCCchhhhhhccCCCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC-
Q 047305 418 ALIDGLCKAGELEKANLLFYKMEIGKNPTLFLRLSQGGNRVHDKASLQTMVEQYCTAGLIHKAYKILMQLAESGNL-PD- 495 (767)
Q Consensus 418 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~- 495 (767)
.....+...|++++|+.++++....... .........+..++..+...|++++|...++++.+.... ++
T Consensus 17 lrA~~~~~~g~~~~A~~~~~~aL~~~~~---------~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 87 (366)
T d1hz4a_ 17 LRAQVAINDGNPDEAERLAKLALEELPP---------GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW 87 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCT---------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcC---------CCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcch
Confidence 3456678899999999999987521110 111122446778889999999999999999988653211 11
Q ss_pred ---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHhhhC----C
Q 047305 496 ---IITYNSLINGFCKVGNINGALKLFKELQLK----GLRPD---SVTYGTLINGLQRVDREEDAFRIFGQMPQN----G 561 (767)
Q Consensus 496 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~ 561 (767)
...+..+...+...|++..+...+...... +.... ...+..+...+...|+++.+...+...... +
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~ 167 (366)
T d1hz4a_ 88 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ 167 (366)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhh
Confidence 234566777888999999999998887642 11111 124556778889999999999999888753 2
Q ss_pred CCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCc-------cchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCC
Q 047305 562 CTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRD-------DESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQ 634 (767)
Q Consensus 562 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~ 634 (767)
.......+......+...+++.++...+.++....+... ..+...+..+...|++++|...+.+.... .|.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~ 246 (366)
T d1hz4a_ 168 PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFAN 246 (366)
T ss_dssp GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTT
T ss_pred hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-cccc
Confidence 222344556666778889999999999988875433322 23445677888999999998888873221 2222
Q ss_pred ----ccchHHHHHHHhhcCCHHHHHHHHHHHHHc----CCCC-ChHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047305 635 ----LAPYTIWLIGLCQDGQVKEALNIFSVLVEC----KAIV-TPPSCVKLIHGLCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 635 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 699 (767)
...+..++.+|...|++++|...+++++.. +.+| ...++..++.+|...|++++|.+.++++++.
T Consensus 247 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 247 NHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 320 (366)
T ss_dssp CGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 234667899999999999999999998632 2223 3557888999999999999999999998763
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.23 E-value=1.2e-09 Score=105.42 Aligned_cols=150 Identities=11% Similarity=0.019 Sum_probs=64.8
Q ss_pred HHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCcc-chHHHHHHHHhcCCHHHHHHHHHHh
Q 047305 548 EDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDD-ESMKSIEEFLQKGEVENAIQGLLEM 626 (767)
Q Consensus 548 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~ 626 (767)
++|..+|+++++...+.+...+..++..+.+.|+++.|..+|+++++..|.+.. ++...+....+.|+.++|.+.+.+.
T Consensus 81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a 160 (308)
T d2onda1 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 334444444443222223333334444444444444444444444444443332 2333444444444444444444442
Q ss_pred hhcCCCCCccchHHHHHHHh-hcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047305 627 DFKLNDFQLAPYTIWLIGLC-QDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 627 ~~~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 699 (767)
. +..|.+...|...+.... ..|+.+.|..+|+++++.. |.++..|..+++.+...|+.++|+.+|+++++.
T Consensus 161 l-~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~ 232 (308)
T d2onda1 161 R-EDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp H-TSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred H-HhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 1 122333333433333322 2345555555555555443 444455555555555555555555555555443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.20 E-value=1.4e-09 Score=105.02 Aligned_cols=220 Identities=8% Similarity=-0.053 Sum_probs=175.3
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC--------------CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 047305 477 IHKAYKILMQLAESGNLPDIITYNSLINGFCKVG--------------NINGALKLFKELQLKGLRPDSVTYGTLINGLQ 542 (767)
Q Consensus 477 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------------~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 542 (767)
.+.+..+|++++... +.+...|...+.-+...+ ..++|..+|++......+.+...+...+..+.
T Consensus 32 ~~Rv~~vyerAl~~~-~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~ 110 (308)
T d2onda1 32 TKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 456788899988763 335667766665554433 34788899999887543445567778888889
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHH-HhcCCHHHHHH
Q 047305 543 RVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEF-LQKGEVENAIQ 621 (767)
Q Consensus 543 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A~~ 621 (767)
..|+.+.|..+|+++++........+|..++..+.+.|+++.|+++|+++++..|.+...+...+... ...|+.+.|..
T Consensus 111 ~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~ 190 (308)
T d2onda1 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred hcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHH
Confidence 99999999999999987543334557889999999999999999999999999999999888877664 45789999998
Q ss_pred HHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC----hHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 047305 622 GLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVT----PPSCVKLIHGLCKRGYLDLAMDVFLYTL 697 (767)
Q Consensus 622 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 697 (767)
.+..... ..|.++..|...+..+...|++++|..+|+++++.. +.+ ...|...+..-...|+.+.+..+++++.
T Consensus 191 i~e~~l~-~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~-~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~ 268 (308)
T d2onda1 191 IFELGLK-KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG-SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHH-HHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS-SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHH-hhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8888432 358899999999999999999999999999998865 322 2367777777778899999999999997
Q ss_pred HC
Q 047305 698 KN 699 (767)
Q Consensus 698 ~~ 699 (767)
+.
T Consensus 269 ~~ 270 (308)
T d2onda1 269 TA 270 (308)
T ss_dssp HH
T ss_pred HH
Confidence 74
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=1.2e-09 Score=102.80 Aligned_cols=205 Identities=13% Similarity=-0.030 Sum_probs=145.4
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 047305 460 DKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLIN 539 (767)
Q Consensus 460 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 539 (767)
...++..++.+|...|++++|...|++.++..+ .+..+|..+..+|...|++++|+..|+++.+.... +..++..+..
T Consensus 36 ~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~ 113 (259)
T d1xnfa_ 36 RAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGI 113 (259)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC-CCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHH
Confidence 456778889999999999999999999998753 37889999999999999999999999999987432 4567888999
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHH
Q 047305 540 GLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENA 619 (767)
Q Consensus 540 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 619 (767)
++...|++++|...++..++.. +.+......+...+.+.+..+.+..+........+... ...+...+.........
T Consensus 114 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 190 (259)
T d1xnfa_ 114 ALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQW--GWNIVEFYLGNISEQTL 190 (259)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCST--HHHHHHHHTTSSCHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhh--hhhHHHHHHHHHHHHHH
Confidence 9999999999999999998854 33444444444555566665555555444444333222 22333333322222222
Q ss_pred HHHHHH---hhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCh
Q 047305 620 IQGLLE---MDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTP 670 (767)
Q Consensus 620 ~~~~~~---~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 670 (767)
...... ......|....+|..+|.+|...|++++|+..|++++..+ |.+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~ 243 (259)
T d1xnfa_ 191 MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN-VHNF 243 (259)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CTTC
T ss_pred HHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCH
Confidence 222111 1111235555678899999999999999999999999876 5444
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.14 E-value=2.9e-10 Score=91.09 Aligned_cols=106 Identities=10% Similarity=-0.044 Sum_probs=67.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCH
Q 047305 572 LMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQV 651 (767)
Q Consensus 572 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 651 (767)
-+..+.+.|++++|+..|.++++.+|.++.++..++.+|...|++++|+..+.+.. ...|.++.+|..++.++...|++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al-~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTV-DLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHH-HhccchhhHHHHHHHHHHHccCH
Confidence 34556667777777777777777776666666666666666666666666666622 12466666666666666666666
Q ss_pred HHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 047305 652 KEALNIFSVLVECKAIVTPPSCVKLIHG 679 (767)
Q Consensus 652 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 679 (767)
++|+..|+++++.. |.++.++..+.++
T Consensus 88 ~~A~~~~~~a~~~~-p~~~~~~~~l~~l 114 (117)
T d1elwa_ 88 EEAKRTYEEGLKHE-ANNPQLKEGLQNM 114 (117)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 66666666666665 5555555554443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.03 E-value=3.5e-09 Score=93.32 Aligned_cols=122 Identities=7% Similarity=-0.052 Sum_probs=67.0
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHH
Q 047305 540 GLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENA 619 (767)
Q Consensus 540 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 619 (767)
.+...|++++|++.|.++. +|++.++..++.+|...|++++|++.|+++++.+|..+.++..++.++.+.|++++|
T Consensus 14 ~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHH
Confidence 3444555555555554431 334444555555555555555555555555555555555544444444444554444
Q ss_pred HHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCC--------------CC-ChHhHHHHHHHHHhcC
Q 047305 620 IQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKA--------------IV-TPPSCVKLIHGLCKRG 684 (767)
Q Consensus 620 ~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------------~~-~~~~~~~l~~~~~~~g 684 (767)
++.|++++.... +. ...++..++.+|.+.|
T Consensus 90 -----------------------------------~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~ 134 (192)
T d1hh8a_ 90 -----------------------------------IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKE 134 (192)
T ss_dssp -----------------------------------HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTT
T ss_pred -----------------------------------HHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCC
Confidence 444444443210 00 1245667888888888
Q ss_pred ChhHHHHHHHHHHHCC
Q 047305 685 YLDLAMDVFLYTLKNG 700 (767)
Q Consensus 685 ~~~~A~~~~~~~~~~~ 700 (767)
++++|.+.++++++..
T Consensus 135 ~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 135 EWKKAEEQLALATSMK 150 (192)
T ss_dssp CHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHhcC
Confidence 8888888888887644
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=1.8e-09 Score=92.32 Aligned_cols=105 Identities=11% Similarity=0.029 Sum_probs=63.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHH
Q 047305 573 MTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVK 652 (767)
Q Consensus 573 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 652 (767)
+..|.+.|++++|+..|+++++.+|.++..+..++.++...|++++|+..+.+.. ..+|.++.+|..+|.+|...|+++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal-~~~p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAI-ELDKKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHH-HHcccchHHHHHHHHHHHHcCCHH
Confidence 4455566777777777777766666666666666666666666666666665521 123666666666666666666666
Q ss_pred HHHHHHHHHHHcCCCCChHhHHHHHHH
Q 047305 653 EALNIFSVLVECKAIVTPPSCVKLIHG 679 (767)
Q Consensus 653 ~A~~~~~~~~~~~~~~~~~~~~~l~~~ 679 (767)
+|+..++++++.. |.++.++..+..+
T Consensus 96 eA~~~~~~a~~~~-p~~~~~~~~l~~~ 121 (159)
T d1a17a_ 96 AALRDYETVVKVK-PHDKDAKMKYQEC 121 (159)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 6666666666654 4455555444433
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=2.7e-09 Score=85.22 Aligned_cols=105 Identities=16% Similarity=0.058 Sum_probs=92.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 047305 605 KSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRG 684 (767)
Q Consensus 605 ~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 684 (767)
..|..+...|++++|+..+.+.- ..+|.++.+|..++.+|...|++++|+..++++++.+ |.++..|..++.++...|
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al-~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAI-KLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH-hcCCcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHcc
Confidence 45788999999999999999943 2469999999999999999999999999999999998 889999999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 047305 685 YLDLAMDVFLYTLKNGFILRPRVCNYLLR 713 (767)
Q Consensus 685 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 713 (767)
++++|+..|+++++. .|+...+...+.
T Consensus 86 ~~~~A~~~~~~a~~~--~p~~~~~~~~l~ 112 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKH--EANNPQLKEGLQ 112 (117)
T ss_dssp CHHHHHHHHHHHHTT--CTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 999999999999874 477665554443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=1.1e-08 Score=90.03 Aligned_cols=143 Identities=15% Similarity=0.072 Sum_probs=112.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHH
Q 047305 498 TYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSC 577 (767)
Q Consensus 498 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 577 (767)
.|+. ...+...|++++|++.|.++ ..|+..++..+..++...|++++|++.|+++++.+ +.....|..++.+|.
T Consensus 8 l~~~-g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~ 81 (192)
T d1hh8a_ 8 LWNE-GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 81 (192)
T ss_dssp HHHH-HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHH
Confidence 4543 56678899999999999865 25678889999999999999999999999999865 556889999999999
Q ss_pred hcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHH
Q 047305 578 RRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNI 657 (767)
Q Consensus 578 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 657 (767)
+.|++++|...|++++...+.+...-.. ..|. ........++..++.+|...|++++|++.
T Consensus 82 ~~g~~~~A~~~~~kAl~~~~~n~~~~~~------~~~~-------------~~~~~~~e~~~n~a~~~~~~~~~~~A~~~ 142 (192)
T d1hh8a_ 82 QTEKYDLAIKDLKEALIQLRGNQLIDYK------ILGL-------------QFKLFACEVLYNIAFMYAKKEEWKKAEEQ 142 (192)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECG------GGTB-------------CCEEEHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhCccCchHHHH------Hhhh-------------hcccchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999877766543210 0010 00111223477889999999999999999
Q ss_pred HHHHHHcC
Q 047305 658 FSVLVECK 665 (767)
Q Consensus 658 ~~~~~~~~ 665 (767)
++++++..
T Consensus 143 l~~A~~~~ 150 (192)
T d1hh8a_ 143 LALATSMK 150 (192)
T ss_dssp HHHHHTTC
T ss_pred HHHHHhcC
Confidence 99998775
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.98 E-value=5.3e-10 Score=100.53 Aligned_cols=101 Identities=12% Similarity=-0.037 Sum_probs=73.7
Q ss_pred CCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHH
Q 047305 564 PSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLI 643 (767)
Q Consensus 564 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~ 643 (767)
|+...+...+..|.+.|++++|+..|.++++.+|.++.++..++.+|.+.|++++|+..+.+.. ..+|.++.+|..+|.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al-~l~p~~~~a~~~lg~ 80 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRAL-ELDGQSVKAHFFLGQ 80 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHH-HhCCCcHHHHHHHHH
Confidence 5555666667777777777777777777777777777777777777777777777777777732 245777777777777
Q ss_pred HHhhcCCHHHHHHHHHHHHHcC
Q 047305 644 GLCQDGQVKEALNIFSVLVECK 665 (767)
Q Consensus 644 ~~~~~g~~~~A~~~~~~~~~~~ 665 (767)
+|...|++++|+..|+++++..
T Consensus 81 ~~~~l~~~~~A~~~~~~al~l~ 102 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAYSLA 102 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC
Confidence 7777777777777777776654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.85 E-value=2.3e-09 Score=85.72 Aligned_cols=102 Identities=9% Similarity=-0.061 Sum_probs=58.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcC---CHHHHHHHHHHhhh-cCCCCCccchHHHHHHHh
Q 047305 571 SLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKG---EVENAIQGLLEMDF-KLNDFQLAPYTIWLIGLC 646 (767)
Q Consensus 571 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~-~~~p~~~~~~~~l~~~~~ 646 (767)
.++..+...+++++|++.|+++++.+|.++.++++++.++.+.+ ++++|++.+.++-. ...|....+|..+|.+|.
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 45556666777777777777777777777777666666665533 33346666555321 111122234556666666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChHhH
Q 047305 647 QDGQVKEALNIFSVLVECKAIVTPPSC 673 (767)
Q Consensus 647 ~~g~~~~A~~~~~~~~~~~~~~~~~~~ 673 (767)
+.|++++|++.|+++++.+ |.+..+.
T Consensus 84 ~~g~~~~A~~~~~~aL~~~-P~~~~A~ 109 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQTE-PQNNQAK 109 (122)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHhhhHHHHHHHHHHHHhC-cCCHHHH
Confidence 6666666666666666654 4444333
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.83 E-value=8.2e-09 Score=81.52 Aligned_cols=92 Identities=8% Similarity=-0.076 Sum_probs=57.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc
Q 047305 604 MKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKR 683 (767)
Q Consensus 604 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 683 (767)
...+..+.+.|++++|+..+.+... ..|.++.+|..+|.++.+.|++++|+..|+++++.+ |.++.++..++.+|...
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~-~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQ-KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH-HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcc-cccccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHC
Confidence 3455555566666666555555221 246666666666666666666666666666666665 56666666666666666
Q ss_pred CChhHHHHHHHHHH
Q 047305 684 GYLDLAMDVFLYTL 697 (767)
Q Consensus 684 g~~~~A~~~~~~~~ 697 (767)
|++++|++.|++.+
T Consensus 98 g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 98 HNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 66666666666653
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=6.6e-08 Score=83.02 Aligned_cols=126 Identities=12% Similarity=-0.026 Sum_probs=94.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhh
Q 047305 568 VYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQ 647 (767)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 647 (767)
.+...+..+.+.|++++|+..|.++++..|.......... .....+. ..+|..++.+|.+
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~-------------~~~~~~~-------~~~~~nla~~y~k 74 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEA-------------QKAQALR-------LASHLNLAMCHLK 74 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHH-------------HHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHH-------------hhhchhH-------HHHHHHHHHHHHh
Confidence 3444566788899999999999999987776655332111 1111111 1237889999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 047305 648 DGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLL 716 (767)
Q Consensus 648 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~ 716 (767)
.|++++|+..++++++.+ |.++.++..+|.+|...|++++|+..|+++++.. |+.......+..+.
T Consensus 75 ~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--P~n~~~~~~l~~~~ 140 (170)
T d1p5qa1 75 LQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVCQ 140 (170)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHH
T ss_pred hhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 999999999999999987 8889999999999999999999999999998854 76665555444443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.81 E-value=2.2e-08 Score=95.29 Aligned_cols=130 Identities=12% Similarity=-0.046 Sum_probs=64.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhccCCC------ccchHHHHHHHHh-cCCHHHHHHHHHHh-hh--c--CCCCCc
Q 047305 568 VYKSLMTWSCRRRKFSLAFSLWLQYLRDISGR------DDESMKSIEEFLQ-KGEVENAIQGLLEM-DF--K--LNDFQL 635 (767)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~-~g~~~~A~~~~~~~-~~--~--~~p~~~ 635 (767)
+|..++.+|.+.|++++|.+.|+++++..+.. ..++..++..|.. .|++++|++.+.+. .. . ..+...
T Consensus 79 ~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~ 158 (290)
T d1qqea_ 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhh
Confidence 44444444555555555555555444332222 1222334444432 35555555555441 10 0 001112
Q ss_pred cchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCh-------HhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 636 APYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTP-------PSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 636 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
.++..++.+|...|++++|++.|+++.... +.++ ..+...+.++...|+++.|...++++.+
T Consensus 159 ~~~~~la~~~~~~g~y~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~ 227 (290)
T d1qqea_ 159 KCFIKCADLKALDGQYIEASDIYSKLIKSS-MGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-SSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred hHHHHHHHHHHHcChHHHHHHHHHHHHHhC-ccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 336666777777777777777777766543 2221 1234455566667777777777776654
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.81 E-value=2.5e-08 Score=84.90 Aligned_cols=103 Identities=13% Similarity=0.007 Sum_probs=91.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 047305 605 KSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRG 684 (767)
Q Consensus 605 ~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 684 (767)
..|..|.+.|++++|+..+.+... .+|.++.+|..++.+|...|++++|+..|+++++.+ |.+..++..++.+|...|
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIE-LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH-HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHhhhccc-cchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcC
Confidence 457889999999999999998432 369999999999999999999999999999999998 888999999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 047305 685 YLDLAMDVFLYTLKNGFILRPRVCNYL 711 (767)
Q Consensus 685 ~~~~A~~~~~~~~~~~~~~~~~~~~~l 711 (767)
++++|...++++++.. |+.......
T Consensus 93 ~~~eA~~~~~~a~~~~--p~~~~~~~~ 117 (159)
T d1a17a_ 93 KFRAALRDYETVVKVK--PHDKDAKMK 117 (159)
T ss_dssp CHHHHHHHHHHHHHHS--TTCHHHHHH
T ss_pred CHHHHHHHHHHHHHcC--CCCHHHHHH
Confidence 9999999999999854 775554443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.80 E-value=1.7e-06 Score=80.79 Aligned_cols=224 Identities=13% Similarity=-0.017 Sum_probs=153.0
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHH
Q 047305 460 DKASLQTMVEQYCTAGLIHKAYKILMQLAESGNLPDIITYNSLINGFCK----VGNINGALKLFKELQLKGLRPDSVTYG 535 (767)
Q Consensus 460 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~ 535 (767)
|+..+..+...+...+++++|++.|++..+.| +...+..|...|.. ..++..|...+......+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 35667778888889999999999999998875 55666667777765 568899999998888765 333344
Q ss_pred HHHHHHH----hcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHH----hcCChhHHHHHHHHHHhccCCCccchHHHH
Q 047305 536 TLINGLQ----RVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSC----RRRKFSLAFSLWLQYLRDISGRDDESMKSI 607 (767)
Q Consensus 536 ~l~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 607 (767)
.+...+. ...+.+.|...++...+.|.. .....+...+. .......|...+.+... +.+...+..++
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~L~ 149 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LNDGDGCTILG 149 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhc--ccccchhhhhh
Confidence 4444433 256788899999988876522 22223333333 23455666666655443 45666777777
Q ss_pred HHHHh----cCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhh----cCCHHHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 047305 608 EEFLQ----KGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQ----DGQVKEALNIFSVLVECKAIVTPPSCVKLIHG 679 (767)
Q Consensus 608 ~~~~~----~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 679 (767)
..|.. ..+...+...+..... +.++.++..++..|.. ..++++|+.+|+++.+.| ++..+..|+.+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~a~~---~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~ 223 (265)
T d1ouva_ 150 SLYDAGRGTPKDLKKALASYDKACD---LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 223 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred hhhccCCCcccccccchhhhhcccc---ccccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHH
Confidence 77775 4455566555555332 4556668888888776 568888999998888775 35677788888
Q ss_pred HHh----cCChhHHHHHHHHHHHCC
Q 047305 680 LCK----RGYLDLAMDVFLYTLKNG 700 (767)
Q Consensus 680 ~~~----~g~~~~A~~~~~~~~~~~ 700 (767)
|.. ..+.++|.++|+++...|
T Consensus 224 y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 224 QYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHcCCCCccCHHHHHHHHHHHHHCc
Confidence 875 447888888888887766
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.76 E-value=1.4e-08 Score=80.08 Aligned_cols=91 Identities=10% Similarity=-0.043 Sum_probs=76.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCC
Q 047305 571 SLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQ 650 (767)
Q Consensus 571 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 650 (767)
..+..+.+.|++++|+..|+++++..|.++.++..++.++.+.|++++|+..+.+.. ..+|.++.+|..++.+|...|+
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al-~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHAR-MLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccc-ccccccccchHHHHHHHHHCCC
Confidence 455667788999999999999999999998888899999999999999988888732 2358888889999999999999
Q ss_pred HHHHHHHHHHHH
Q 047305 651 VKEALNIFSVLV 662 (767)
Q Consensus 651 ~~~A~~~~~~~~ 662 (767)
+++|++.+++.+
T Consensus 100 ~~~A~~~l~~~l 111 (112)
T d1hxia_ 100 ANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999888864
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.74 E-value=2.1e-08 Score=89.71 Aligned_cols=96 Identities=13% Similarity=0.000 Sum_probs=66.2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHH
Q 047305 529 PDSVTYGTLINGLQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIE 608 (767)
Q Consensus 529 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 608 (767)
|+...+....+.+.+.|++++|+..|.++++.. +.++..|..++.+|.+.|++++|+..|+++++..|.++.++..++.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~ 80 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence 455555666666777777777777777766643 4456666667777777777777777777777777777777777777
Q ss_pred HHHhcCCHHHHHHHHHH
Q 047305 609 EFLQKGEVENAIQGLLE 625 (767)
Q Consensus 609 ~~~~~g~~~~A~~~~~~ 625 (767)
+|...|++++|+..+.+
T Consensus 81 ~~~~l~~~~~A~~~~~~ 97 (201)
T d2c2la1 81 CQLEMESYDEAIANLQR 97 (201)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 77777777777766666
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.73 E-value=1.8e-07 Score=88.87 Aligned_cols=192 Identities=10% Similarity=-0.095 Sum_probs=103.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC----CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHhhhC----C-CCCCHhhHHHHH
Q 047305 504 NGFCKVGNINGALKLFKELQLK----GLRPD-SVTYGTLINGLQRVDREEDAFRIFGQMPQN----G-CTPSPAVYKSLM 573 (767)
Q Consensus 504 ~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~ 573 (767)
..|...|++++|.+.|.++.+. +-+++ ..+|..+..+|.+.|++++|...+++..+. + ......++..++
T Consensus 45 ~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 124 (290)
T d1qqea_ 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (290)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHH
Confidence 3445555555555555555432 10111 134555566666666666666666655431 1 001123344444
Q ss_pred HHHH-hcCChhHHHHHHHHHHhccCCC------ccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCc-------cchH
Q 047305 574 TWSC-RRRKFSLAFSLWLQYLRDISGR------DDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQL-------APYT 639 (767)
Q Consensus 574 ~~~~-~~g~~~~A~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~-------~~~~ 639 (767)
.+|. ..|++++|++.|.++++..+.. ..++..++.++...|++++|+..+.+.... .|.+. ..+.
T Consensus 125 ~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS-SMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TSSCTTTGGGHHHHHH
T ss_pred HhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHh-CccchhhhhhHHHHHH
Confidence 4443 3467777777776666432221 223455677777777777777777663221 12222 1245
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHcCCCCC-----hHhHHHHHHHHHh--cCChhHHHHHHHHHH
Q 047305 640 IWLIGLCQDGQVKEALNIFSVLVECKAIVT-----PPSCVKLIHGLCK--RGYLDLAMDVFLYTL 697 (767)
Q Consensus 640 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~--~g~~~~A~~~~~~~~ 697 (767)
..+.++...|+++.|...++++.+.. |.- ......++.++.. .+.+++|+..|+++.
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~~~-~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQSED-PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 56667777888888888888887764 211 2234445555554 345788888887653
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.70 E-value=1.2e-07 Score=81.18 Aligned_cols=127 Identities=10% Similarity=-0.038 Sum_probs=93.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHh
Q 047305 567 AVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLC 646 (767)
Q Consensus 567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~ 646 (767)
..+...+..+.+.|++++|+..|.+++...|........ .. .....+ ...+|.+++.+|.
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~------------~~-~~~~~~-------~~~~~~Nla~~~~ 75 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEK------------ES-KASESF-------LLAAFLNLAMCYL 75 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHH------------HH-HHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchh------------hh-hhcchh-------HHHHHHhHHHHHH
Confidence 344556677888899999999998888765544332211 10 111111 1234888999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 047305 647 QDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSLL 716 (767)
Q Consensus 647 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~ 716 (767)
+.|++++|+..++++++.+ |.+..++..++.+|...|++++|+..|++++.. .|+.......+..+.
T Consensus 76 ~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l--~P~n~~~~~~l~~~~ 142 (168)
T d1kt1a1 76 KLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQIFMCQ 142 (168)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHH
T ss_pred Hhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 9999999999999999987 889999999999999999999999999999874 487766655544443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.68 E-value=1.7e-08 Score=83.90 Aligned_cols=126 Identities=12% Similarity=-0.016 Sum_probs=87.1
Q ss_pred HHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHH
Q 047305 576 SCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEAL 655 (767)
Q Consensus 576 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 655 (767)
|.+.+.+++|+..|+++++.+|+++.++..++.++...+++..+.+ ..+.+++|+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e-------------------------~~~~~~~Ai 61 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISD-------------------------AKQMIQEAI 61 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHH-------------------------HHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhH-------------------------HHHHHHHHH
Confidence 4566778999999999999999999999999888877655544322 123456777
Q ss_pred HHHHHHHHcCCCCChHhHHHHHHHHHhcC-----------ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhhcCCccHH
Q 047305 656 NIFSVLVECKAIVTPPSCVKLIHGLCKRG-----------YLDLAMDVFLYTLKNGFILRPRVCNYLLRSLLFSKDNKKV 724 (767)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 724 (767)
..|+++++.+ |.++.++..+|.+|...| ++++|.+.|+++++. .|+...+...+... .
T Consensus 62 ~~~~kAl~l~-P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~--------~ 130 (145)
T d1zu2a1 62 TKFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT--------A 130 (145)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH--------H
T ss_pred HHHHHHHHhc-chhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH--------H
Confidence 7777777776 677777777777776654 357788888888874 47777666555443 2
Q ss_pred HHHHHHHHHHHcC
Q 047305 725 HAYHLLCRMKSVG 737 (767)
Q Consensus 725 ~a~~~~~~~~~~~ 737 (767)
+|.+++.++...|
T Consensus 131 ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 131 KAPQLHAEAYKQG 143 (145)
T ss_dssp THHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHh
Confidence 3445555544443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.67 E-value=4.9e-08 Score=77.75 Aligned_cols=107 Identities=8% Similarity=0.033 Sum_probs=86.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHH-hhhcCCCCCccchHHHHHHHhhcC---CHHHHHHHHHHHHHcCCCCC-hHhHHHHHHH
Q 047305 605 KSIEEFLQKGEVENAIQGLLE-MDFKLNDFQLAPYTIWLIGLCQDG---QVKEALNIFSVLVECKAIVT-PPSCVKLIHG 679 (767)
Q Consensus 605 ~l~~~~~~~g~~~~A~~~~~~-~~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~ 679 (767)
.++..+...+++++|.+.+.+ +. .+|.++.++.++++++.+.+ ++++|+.++++++..+..|+ ..++..+|.+
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~--~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 467778889999999999988 44 45999999999999998755 55679999999988763333 3478899999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047305 680 LCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSL 715 (767)
Q Consensus 680 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l 715 (767)
|.+.|++++|+++|+++++. .|+......+...+
T Consensus 82 y~~~g~~~~A~~~~~~aL~~--~P~~~~A~~l~~~I 115 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT--EPQNNQAKELERLI 115 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh--CcCCHHHHHHHHHH
Confidence 99999999999999999985 48877666655544
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=1.4e-07 Score=76.47 Aligned_cols=92 Identities=10% Similarity=0.108 Sum_probs=48.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHH-hhhcCCCCCcc-------chHHH
Q 047305 570 KSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLE-MDFKLNDFQLA-------PYTIW 641 (767)
Q Consensus 570 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~p~~~~-------~~~~l 641 (767)
..++..+.+.|++++|+..|.++++.+|.++.++..++.+|.+.|++++|+..+.+ +.. +|.++. +|..+
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV--GRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHH
Confidence 34555566666666666666666666666655555556666556666555555555 211 132222 23334
Q ss_pred HHHHhhcCCHHHHHHHHHHHHH
Q 047305 642 LIGLCQDGQVKEALNIFSVLVE 663 (767)
Q Consensus 642 ~~~~~~~g~~~~A~~~~~~~~~ 663 (767)
+.++...+++++|++.|++.+.
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHh
Confidence 4444444555555555555544
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.61 E-value=1.1e-07 Score=81.79 Aligned_cols=122 Identities=11% Similarity=0.024 Sum_probs=83.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCC
Q 047305 571 SLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQ 650 (767)
Q Consensus 571 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 650 (767)
.....+.+.|++++|+..|.++++..+.. .......+. . ...|.....+.+++.+|.+.|+
T Consensus 32 ~~~~~~~~~~~y~~Ai~~y~~al~~~~~~-----------~~~~~~~~~------~--~~~~~~~~~~~nla~~~~~~~~ 92 (169)
T d1ihga1 32 NIGNTFFKSQNWEMAIKKYTKVLRYVEGS-----------RAAAEDADG------A--KLQPVALSCVLNIGACKLKMSD 92 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----------HHHSCHHHH------G--GGHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhhhh-----------hhhhhhHHH------H--HhChhhHHHHHHHHHHHHhhcc
Confidence 34555667888888888888776432111 000111111 1 1225556668888888888899
Q ss_pred HHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047305 651 VKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRS 714 (767)
Q Consensus 651 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 714 (767)
+++|+..++++++.+ |.++.+|..+|.+|...|++++|+..|+++++.. |+.......+..
T Consensus 93 ~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~--p~n~~~~~~l~~ 153 (169)
T d1ihga1 93 WQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAELLK 153 (169)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred cchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 999999999988887 7888888889999999999999999999888754 665544443333
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=1.2e-08 Score=105.15 Aligned_cols=114 Identities=13% Similarity=0.016 Sum_probs=48.0
Q ss_pred HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHH
Q 047305 566 PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGL 645 (767)
Q Consensus 566 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~ 645 (767)
...+..+...+.+.|+.++|...+.+.+...|. .++..+|..+...|++++|+..+.+.. ...|++..+|+.||.++
T Consensus 120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~LG~l~~~~~~~~~A~~~y~~A~-~l~P~~~~~~~~Lg~~~ 196 (497)
T d1ya0a1 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ--HCLVHLGDIARYRNQTSQAESYYRHAA-QLVPSNGQPYNQLAILA 196 (497)
T ss_dssp -----------------------CCHHHHHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTBSHHHHHHHHHH
T ss_pred HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHcccHHHHHHHHHHHH-HHCCCchHHHHHHHHHH
Confidence 334444445555555555555555555543332 344455555555555555555555521 12355555555555555
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc
Q 047305 646 CQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKR 683 (767)
Q Consensus 646 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 683 (767)
...|++.+|+..|.+++... +|-+.++..|+..+.+.
T Consensus 197 ~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 197 SSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHh
Confidence 55555555655555555554 45555555555555443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=1.8e-07 Score=75.68 Aligned_cols=100 Identities=11% Similarity=0.102 Sum_probs=82.7
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHH-hhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChH-------hHH
Q 047305 603 SMKSIEEFLQKGEVENAIQGLLE-MDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPP-------SCV 674 (767)
Q Consensus 603 ~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~ 674 (767)
+-.+|..+...|++++|+..+.+ +. .+|.++.++..++.+|.+.|++++|+..++++++.+ |.++. ++.
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKE--LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34678999999999999999998 44 369999999999999999999999999999998765 44433 566
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 047305 675 KLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRV 707 (767)
Q Consensus 675 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 707 (767)
.++.++...+++++|+..|++++... +++..
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~kal~~~--~~~~~ 114 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDV 114 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcC--CCHHH
Confidence 67788889999999999999988643 55544
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.58 E-value=8.3e-06 Score=75.88 Aligned_cols=230 Identities=10% Similarity=-0.043 Sum_probs=165.7
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCHhhHH
Q 047305 495 DIITYNSLINGFCKVGNINGALKLFKELQLKGLRPDSVTYGTLINGLQR----VDREEDAFRIFGQMPQNGCTPSPAVYK 570 (767)
Q Consensus 495 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~ 570 (767)
|+..+..+...+...+++++|++.|++..+.| +...+..|...|.. ..++..|...+......+ ++....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 34566777778888999999999999999876 55666677777765 668999999999988765 333344
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHhccCCCccchHHHHHHHHh----cCCHHHHHHHHHHhhhcCCCCCccchHHHH
Q 047305 571 SLMTWSCR----RRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQ----KGEVENAIQGLLEMDFKLNDFQLAPYTIWL 642 (767)
Q Consensus 571 ~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~ 642 (767)
.+...+.. .++.+.|...++...+..+. .+...++..+.. ......+...+..... +.+...+..|+
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~--~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~L~ 149 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYA--EGCASLGGIYHDGKVVTRDFKKAVEYFTKACD---LNDGDGCTILG 149 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH---TTCHHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhhh--hHHHhhcccccCCCcccchhHHHHHHhhhhhc---ccccchhhhhh
Confidence 44444432 46888999999988876443 334444444443 4556667666666432 45556688999
Q ss_pred HHHhh----cCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047305 643 IGLCQ----DGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCK----RGYLDLAMDVFLYTLKNGFILRPRVCNYLLRS 714 (767)
Q Consensus 643 ~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 714 (767)
..|.. ..+...+..+++.+.+.+ ++.+...++.+|.. ..+.++|+.+|+++.+.| ++.....|...
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~ 223 (265)
T d1ouva_ 150 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 223 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred hhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHH
Confidence 99886 467888999999988754 56788889988886 678999999999998876 55555556555
Q ss_pred HhhcCC--ccHHHHHHHHHHHHHcCCCCC
Q 047305 715 LLFSKD--NKKVHAYHLLCRMKSVGYDLD 741 (767)
Q Consensus 715 l~~~~~--~~~~~a~~~~~~~~~~~~~~~ 741 (767)
+....| +++++|.+++++..+.|..+.
T Consensus 224 y~~G~g~~~n~~~A~~~~~kAa~~g~~~A 252 (265)
T d1ouva_ 224 QYNGEGVTRNEKQAIENFKKGCKLGAKGA 252 (265)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred HHcCCCCccCHHHHHHHHHHHHHCcCHHH
Confidence 542222 237899999999998886553
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.58 E-value=2.7e-07 Score=77.39 Aligned_cols=124 Identities=8% Similarity=-0.063 Sum_probs=89.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcC
Q 047305 570 KSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDG 649 (767)
Q Consensus 570 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 649 (767)
..-+..+.+.|++.+|+..|.++++..|........... .....+ ....+.+++.+|.+.|
T Consensus 21 ~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~------------~~~~~~-------~~~~~~Nla~~~~~l~ 81 (153)
T d2fbna1 21 KEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILL------------DKKKNI-------EISCNLNLATCYNKNK 81 (153)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHH------------HHHHHH-------HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHH------------HhhhhH-------HHHHHhhHHHHHHHhc
Confidence 334455677888888888888888765544332211110 000111 1134788999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047305 650 QVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNYLLRSL 715 (767)
Q Consensus 650 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~l 715 (767)
++++|++.++++++.+ |.+..+|..+|.+|...|++++|+..|+++++.+ |++......+..+
T Consensus 82 ~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~--P~n~~~~~~l~~~ 144 (153)
T d2fbna1 82 DYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNSYELC 144 (153)
T ss_dssp CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHH
T ss_pred ccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 9999999999999987 8888999999999999999999999999998854 7766555544443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.52 E-value=2.4e-08 Score=102.83 Aligned_cols=116 Identities=4% Similarity=-0.204 Sum_probs=42.4
Q ss_pred cCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHH
Q 047305 579 RRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIF 658 (767)
Q Consensus 579 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 658 (767)
.+.++.|+..+.+..+..|++...+..++..+.+.|+.++|+..+.+... ++...++..+|.++...|++++|+..|
T Consensus 99 ~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~LG~l~~~~~~~~~A~~~y 175 (497)
T d1ya0a1 99 SGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS---YICQHCLVHLGDIARYRNQTSQAESYY 175 (497)
T ss_dssp HHHHHHHHHHHTC-------------------------------CCHHHH---HHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 34455555555555555555555555555555555555555444333110 111123455555555555555555555
Q ss_pred HHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047305 659 SVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLK 698 (767)
Q Consensus 659 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 698 (767)
+++++.. |.+..+++.||.+|...|+..+|+..|.+++.
T Consensus 176 ~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~ 214 (497)
T d1ya0a1 176 RHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIA 214 (497)
T ss_dssp HHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555554 45555555555555555555555555555543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=6.2e-07 Score=76.72 Aligned_cols=79 Identities=9% Similarity=-0.097 Sum_probs=41.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc
Q 047305 604 MKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKR 683 (767)
Q Consensus 604 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 683 (767)
.+++.+|.+.|++++|+..+.+.. ..+|.++.+|..+|.+|...|++++|+..|+++++.+ |.++.+...+..+..+.
T Consensus 66 ~nla~~y~k~~~~~~A~~~~~~al-~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~ 143 (170)
T d1p5qa1 66 LNLAMCHLKLQAFSAAIESCNKAL-ELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRI 143 (170)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcccccchhhhhh-hccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHH
Confidence 344445555555555544444411 1235555556666666666666666666666666555 45555555555554443
Q ss_pred C
Q 047305 684 G 684 (767)
Q Consensus 684 g 684 (767)
+
T Consensus 144 ~ 144 (170)
T d1p5qa1 144 R 144 (170)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.43 E-value=1.7e-06 Score=72.29 Aligned_cols=69 Identities=14% Similarity=-0.091 Sum_probs=55.0
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhhcCCccHHHHHHHHHHHHHcCCCCCCcch
Q 047305 671 PSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRV-CNYLLRSLLFSKDNKKVHAYHLLCRMKSVGYDLDACLY 745 (767)
Q Consensus 671 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 745 (767)
.++..++.+|.+.|++++|+..++++++.+ |+..- +..+..++. ..|+ +++|...+++.... .|+....
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~--p~~~ka~~~~g~~~~-~lg~-~~~A~~~~~~al~l--~P~n~~~ 137 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKID--KNNVKALYKLGVANM-YFGF-LEEAKENLYKAASL--NPNNLDI 137 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHH-HHTC-HHHHHHHHHHHHHH--STTCHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhcccccc--chhhhhhHHhHHHHH-HcCC-HHHHHHHHHHHHHh--CCCCHHH
Confidence 467779999999999999999999999854 76544 455555555 8888 99999999998876 4766533
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.41 E-value=6.5e-07 Score=76.70 Aligned_cols=71 Identities=11% Similarity=-0.068 Sum_probs=55.7
Q ss_pred CCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhhcCCccHHHHHHHHHHHHHcCCCCCCc
Q 047305 667 IVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRV-CNYLLRSLLFSKDNKKVHAYHLLCRMKSVGYDLDAC 743 (767)
Q Consensus 667 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 743 (767)
+....++..++.+|.+.|++++|+..++++++.. |+... +..+..++. ..|+ +++|...+++..+. .|+..
T Consensus 74 ~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~--p~~~~a~~~~g~~~~-~l~~-~~~A~~~~~~al~l--~p~n~ 145 (169)
T d1ihga1 74 PVALSCVLNIGACKLKMSDWQGAVDSCLEALEID--PSNTKALYRRAQGWQ-GLKE-YDQALADLKKAQEI--APEDK 145 (169)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHH-HTTC-HHHHHHHHHHHHHH--CTTCH
T ss_pred hhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh--hhhhhHHHhHHHHHH-HccC-HHHHHHHHHHHHHh--CCCCH
Confidence 4456678889999999999999999999999754 77555 444555555 8888 99999999998875 56654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.30 E-value=7.9e-06 Score=69.51 Aligned_cols=77 Identities=10% Similarity=-0.059 Sum_probs=37.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc
Q 047305 605 KSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKR 683 (767)
Q Consensus 605 ~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 683 (767)
+++.+|...|++++|+..+.+... .+|.++.+|..++.+|...|++++|+..|+++++.+ |.++.+...+..+....
T Consensus 69 Nla~~~~~l~~~~~Ai~~~~~al~-l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 69 NLAMCYLKLREYTKAVECCDKALG-LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQKKA 145 (168)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhhcccchhhhhhhhh-cccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHH
Confidence 344444444444444444444211 235555555555555555555555555555555554 44555555555444433
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.28 E-value=5.5e-06 Score=70.82 Aligned_cols=122 Identities=14% Similarity=0.065 Sum_probs=90.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCH
Q 047305 572 LMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQV 651 (767)
Q Consensus 572 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 651 (767)
.+......|++++|.+.|.+++...+.+........ .........+. +....++..++.++...|++
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~------~w~~~~r~~l~-------~~~~~a~~~la~~~~~~g~~ 83 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDF------QFVEPFATALV-------EDKVLAHTAKAEAEIACGRA 83 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTS------TTHHHHHHHHH-------HHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcch------HHHHHHHHHHH-------HHHHHHHHHHHHHHHHCCCc
Confidence 334567889999999999999987776543322110 00011111222 22234588899999999999
Q ss_pred HHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHHH
Q 047305 652 KEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLK-----NGFILRPRV 707 (767)
Q Consensus 652 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~ 707 (767)
++|+..++++++.+ |.+...|..++.+|...|+.++|++.|+++.+ .|+.|.+.+
T Consensus 84 ~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 84 SAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred hHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 99999999999998 88999999999999999999999999999844 488887754
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.23 E-value=9.9e-07 Score=72.85 Aligned_cols=127 Identities=9% Similarity=-0.066 Sum_probs=80.8
Q ss_pred HhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHh----------cCChhHHHHHHHHHHhccCCCccchHHHHHHHH
Q 047305 542 QRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCR----------RRKFSLAFSLWLQYLRDISGRDDESMKSIEEFL 611 (767)
Q Consensus 542 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 611 (767)
.+.+.+++|+..|+.+++.. +.+..++..++.+|.. .+.+++|+..|+++++.+|.++.+++.++.+|.
T Consensus 8 ~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence 34455666666666666543 4455555555555543 244578888888888888888888888888887
Q ss_pred hcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHH
Q 047305 612 QKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMD 691 (767)
Q Consensus 612 ~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 691 (767)
..|+.. ++. ....+++++|.+.|+++++.. |.+...+..|+.+ .+|.+
T Consensus 87 ~~g~~~--------------~~~----------~~~~~~~~~A~~~~~kal~l~-P~~~~~~~~L~~~-------~ka~~ 134 (145)
T d1zu2a1 87 SFAFLT--------------PDE----------TEAKHNFDLATQFFQQAVDEQ-PDNTHYLKSLEMT-------AKAPQ 134 (145)
T ss_dssp HHHHHC--------------CCH----------HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH-------HTHHH
T ss_pred Hcccch--------------hhH----------HHHHHhHHHhhhhhhcccccC-CCHHHHHHHHHHH-------HHHHH
Confidence 665321 100 011235788999999998886 5555555444433 46677
Q ss_pred HHHHHHHCCC
Q 047305 692 VFLYTLKNGF 701 (767)
Q Consensus 692 ~~~~~~~~~~ 701 (767)
++.++.+.|+
T Consensus 135 ~~~e~~k~~~ 144 (145)
T d1zu2a1 135 LHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHSSS
T ss_pred HHHHHHHHhc
Confidence 7777766653
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.21 E-value=4.3e-07 Score=83.41 Aligned_cols=122 Identities=10% Similarity=-0.074 Sum_probs=69.7
Q ss_pred HhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHH
Q 047305 577 CRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALN 656 (767)
Q Consensus 577 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 656 (767)
.+.|++++|+..|++.++..|.+...+..++..++..|++++|+..+..... ..|++...+..++.++...+..+++..
T Consensus 7 L~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~-l~P~~~~~~~~l~~ll~a~~~~~~a~~ 85 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIK-LFPEYLPGASQLRHLVKAAQARKDFAQ 85 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCGGGHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHhccccHHHHH
Confidence 3556777777777777777776666666666666666666666666666321 236655555556655555554444443
Q ss_pred HHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047305 657 IFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 699 (767)
...+....+.+++...+...+..+...|+.++|...++++.+.
T Consensus 86 ~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 86 GAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp SCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 3333222221223333444555566666677776666666553
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.18 E-value=6.4e-07 Score=82.23 Aligned_cols=130 Identities=8% Similarity=-0.028 Sum_probs=101.5
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHH
Q 047305 541 LQRVDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAI 620 (767)
Q Consensus 541 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 620 (767)
..+.|++++|+..+++.++.. +.+...+..++.+|+..|++++|...|+.+++..|.....+..++..+...+..+++.
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHH
Confidence 456799999999999999864 6678899999999999999999999999999999999999888888877776666654
Q ss_pred HHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHh
Q 047305 621 QGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPS 672 (767)
Q Consensus 621 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 672 (767)
...........|+....+...+..+...|++++|.+.++++.+.. |..+..
T Consensus 85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~-p~~~~~ 135 (264)
T d1zbpa1 85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR-QEKGFL 135 (264)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCCEE
T ss_pred HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCCCcc
Confidence 332221222235444556667788889999999999999998875 444433
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.09 E-value=6.4e-06 Score=61.91 Aligned_cols=82 Identities=13% Similarity=0.008 Sum_probs=55.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhh
Q 047305 568 VYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQ 647 (767)
Q Consensus 568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~ 647 (767)
.+-.++..+.+.|++++|+..|+++++..|.++.. .+....++..++.+|.+
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~----------------------------~~~~~~~l~~Lg~~~~~ 58 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEIS----------------------------TIDKVSVLDYLSYAVYQ 58 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCC----------------------------SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhcc----------------------------CccHHHHHHHHhhHHHh
Confidence 33455666666777777777766666554433322 12233458888999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 047305 648 DGQVKEALNIFSVLVECKAIVTPPSCVKLIH 678 (767)
Q Consensus 648 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 678 (767)
.|++++|+..++++++.+ |.++.++..+..
T Consensus 59 ~g~~~~A~~~y~~aL~l~-P~~~~a~~Nl~~ 88 (95)
T d1tjca_ 59 QGDLDKALLLTKKLLELD-PEHQRANGNLKY 88 (95)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 999999999999998887 777777666543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.05 E-value=6.8e-06 Score=61.76 Aligned_cols=72 Identities=11% Similarity=-0.144 Sum_probs=59.8
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHcCCCC-------ChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVECKAIV-------TPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNY 710 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 710 (767)
+..+|.++.+.|++++|+..|+++++.. +. ...++..++.+|.+.|++++|+..++++++.. |+......
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~-~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~--P~~~~a~~ 84 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQL-DEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD--PEHQRANG 84 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHH-hhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC--cCCHHHHH
Confidence 7789999999999999999999997653 22 24678899999999999999999999999854 88765444
Q ss_pred HH
Q 047305 711 LL 712 (767)
Q Consensus 711 l~ 712 (767)
.+
T Consensus 85 Nl 86 (95)
T d1tjca_ 85 NL 86 (95)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.01 E-value=0.006 Score=56.90 Aligned_cols=176 Identities=14% Similarity=0.093 Sum_probs=93.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047305 236 PDFVAYNALLNGFCKLRRVDEALALLRSFEKDGFVPRLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMI 315 (767)
Q Consensus 236 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 315 (767)
|+..-...+...|.+.|.++.|..++..+. -|..++..+.+.++++.|.+++.+.. +..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHH
Confidence 444445556666777777777777776432 35666777777777777777665542 566777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 047305 316 RGLSEAGKVKDAMKLLSDMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVD 395 (767)
Q Consensus 316 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 395 (767)
..+.+.....-+ .+.......+......++..|-..|.+++...+++...... ..+...++.++..|++.+ .+
T Consensus 77 ~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~-~~ 149 (336)
T d1b89a_ 77 FACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQ 149 (336)
T ss_dssp HHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC-HH
T ss_pred HHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC-hH
Confidence 777766554432 22233333455566677777777888888888777766542 356667777777777653 33
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 047305 396 DAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKM 439 (767)
Q Consensus 396 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 439 (767)
+..+.++.. ...-+. ..++..|.+.+-|+++.-++.++
T Consensus 150 kl~e~l~~~---s~~y~~---~k~~~~c~~~~l~~elv~Ly~~~ 187 (336)
T d1b89a_ 150 KMREHLELF---WSRVNI---PKVLRAAEQAHLWAELVFLYDKY 187 (336)
T ss_dssp HHHHHHHHH---STTSCH---HHHHHHHHTTTCHHHHHHHHHHT
T ss_pred HHHHHHHhc---cccCCH---HHHHHHHHHcCChHHHHHHHHhc
Confidence 333333222 111222 23445555555555555444443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.96 E-value=1.6e-05 Score=66.61 Aligned_cols=109 Identities=13% Similarity=-0.077 Sum_probs=71.7
Q ss_pred hHHHH--HHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHHHHhhhcCCCCCccchHHHHHHH
Q 047305 568 VYKSL--MTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGLLEMDFKLNDFQLAPYTIWLIGL 645 (767)
Q Consensus 568 ~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~ 645 (767)
+|..+ +..+.+.|++++|++.|+++++..|..+........ +.....|++++.+|
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~-----------------------~~~a~~~~nlg~~~ 65 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHA-----------------------GFDAFCHAGLAEAL 65 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHH-----------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccc-----------------------hhHHHHHHHHHHHH
Confidence 44444 444667788888888888888777665543210000 01123477888888
Q ss_pred hhcCCHHHHHHHHHHHHHcC-----CCC-----ChHhHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 047305 646 CQDGQVKEALNIFSVLVECK-----AIV-----TPPSCVKLIHGLCKRGYLDLAMDVFLYTLKN 699 (767)
Q Consensus 646 ~~~g~~~~A~~~~~~~~~~~-----~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 699 (767)
...|++++|+..++++++.. ..+ ...+++.++.+|...|++++|+..|+++++.
T Consensus 66 ~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 66 AGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888888876431 011 1224667888888889999999888888763
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.83 E-value=2.8e-05 Score=64.99 Aligned_cols=92 Identities=12% Similarity=-0.064 Sum_probs=65.4
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHcCC--CC---------ChHhHHHHHHHHHhcCChhHHHHHHHHHHHC-----CCCCCH
Q 047305 642 LIGLCQDGQVKEALNIFSVLVECKA--IV---------TPPSCVKLIHGLCKRGYLDLAMDVFLYTLKN-----GFILRP 705 (767)
Q Consensus 642 ~~~~~~~g~~~~A~~~~~~~~~~~~--~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~ 705 (767)
++.+...|+|++|+..|+++++... +. ...+|..++.+|...|++++|...++++++. ...++.
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 5566777888888888888765431 11 1357888999999999999999999999863 122222
Q ss_pred H-----HHHHHHHHHhhcCCccHHHHHHHHHHHHH
Q 047305 706 R-----VCNYLLRSLLFSKDNKKVHAYHLLCRMKS 735 (767)
Q Consensus 706 ~-----~~~~l~~~l~~~~~~~~~~a~~~~~~~~~ 735 (767)
. .+..+..++. ..|+ +++|...+++..+
T Consensus 96 ~~~~~~a~~~~g~~~~-~lg~-~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALD-GLGR-GAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHH-HTTC-HHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHH-HHHH-HHHHHHHHHHHHH
Confidence 1 2233445554 8898 9999999999764
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.78 E-value=0.015 Score=54.12 Aligned_cols=279 Identities=9% Similarity=0.004 Sum_probs=132.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 047305 101 FFVLISGYYKVGDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAVYYEMVKLNCLPNIVTFSLLINGLSK 180 (767)
Q Consensus 101 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 180 (767)
...++..|.+.|.++.|..+|..+.. |..++..+.+.+++..|.+...+. .+..+|..+...+..
T Consensus 17 ~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~ 81 (336)
T d1b89a_ 17 IQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVD 81 (336)
T ss_dssp ------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHh
Confidence 33556666677777777777765543 556666667777777776665543 244566666666665
Q ss_pred cCChHHHHHHHHHHHHCCCCCChhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047305 181 SGKTEVAIKMLDEMTQRGILPNKFTYTIVISGLCQINRADEAYRLFLKMKDSGCSPDFVAYNALLNGFCKLRRVDEALAL 260 (767)
Q Consensus 181 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 260 (767)
......| .+.......++.....++..|-..|.+++...+++..... -..+...++.++..|++.+ .++..+.
T Consensus 82 ~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~~kl~e~ 154 (336)
T d1b89a_ 82 GKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQKMREH 154 (336)
T ss_dssp TTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-HHHHHHH
T ss_pred CcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-hHHHHHH
Confidence 5554432 1222222334555566777777777777777777766432 2345566667777776653 2333333
Q ss_pred HHHHHhCCCCC--------CcccHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047305 261 LRSFEKDGFVP--------RLGSYSCLIDGLFRAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLS 332 (767)
Q Consensus 261 ~~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 332 (767)
+..... ...+ ....|..++..|.+.|++++|..+. .++ .++..-....+..+.+..+.+...+++.
T Consensus 155 l~~~s~-~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~---i~~--~~~~~~~~~f~e~~~k~~N~e~~~~~i~ 228 (336)
T d1b89a_ 155 LELFWS-RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MNH--PTDAWKEGQFKDIITKVANVELYYRAIQ 228 (336)
T ss_dssp HHHHST-TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH---HHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHH
T ss_pred HHhccc-cCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHH---HHc--chhhhhHHHHHHHHHccCChHHHHHHHH
Confidence 222110 0000 0112233333344444444443222 111 1122222233333444444443333333
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 047305 333 DMRERGIVPDTYCYNALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGCFPS 412 (767)
Q Consensus 333 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 412 (767)
...+. ++...+.++......-+. ..++..+.+.+++.....+++.....+ +
T Consensus 229 ~yL~~----~p~~i~~lL~~v~~~~d~----------------------~r~V~~~~k~~~l~li~p~Le~v~~~n---~ 279 (336)
T d1b89a_ 229 FYLEF----KPLLLNDLLMVLSPRLDH----------------------TRAVNYFSKVKQLPLVKPYLRSVQNHN---N 279 (336)
T ss_dssp HHHHH----CGGGHHHHHHHHGGGCCH----------------------HHHHHHHHHTTCTTTTHHHHHHHHTTC---C
T ss_pred HHHHc----CHHHHHHHHHHhccCCCH----------------------HHHHHHHHhcCCcHHHHHHHHHHHHcC---h
Confidence 33321 111122222222222222 223444555666666777777766544 4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHH
Q 047305 413 VGMFNALIDGLCKAGELEKANLLF 436 (767)
Q Consensus 413 ~~~~~~l~~~~~~~~~~~~A~~~~ 436 (767)
....+++...|...++++.-.+..
T Consensus 280 ~~vn~al~~lyie~~d~~~l~~~i 303 (336)
T d1b89a_ 280 KSVNESLNNLFITEEDYQALRTSI 303 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcchhHHHHHHH
Confidence 567888888888888865544443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.62 E-value=0.00038 Score=59.00 Aligned_cols=71 Identities=13% Similarity=0.027 Sum_probs=58.4
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhhcCCccHHHHHHHHHHHH-----HcCCCCCCcc
Q 047305 671 PSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRV-CNYLLRSLLFSKDNKKVHAYHLLCRMK-----SVGYDLDACL 744 (767)
Q Consensus 671 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~ 744 (767)
.++..++.++...|++++|+..++++++.. |.... +..++..+. ..|+ ..+|...|+++. +.|+.|+..+
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~--P~~e~~~~~l~~al~-~~Gr-~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYY-LSDR-QSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHH-TTTC-HHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhC--CccHHHHHHHHHHHH-HhcC-HHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 567889999999999999999999999854 77655 555666666 8898 999999999975 5799998754
Q ss_pred h
Q 047305 745 Y 745 (767)
Q Consensus 745 ~ 745 (767)
.
T Consensus 144 ~ 144 (179)
T d2ff4a2 144 R 144 (179)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.19 E-value=0.0027 Score=50.57 Aligned_cols=81 Identities=11% Similarity=-0.080 Sum_probs=44.3
Q ss_pred CCHHHHHHHHHHhhhcCCCCCccchHHHHHHHhh----cCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh----cCC
Q 047305 614 GEVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQ----DGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCK----RGY 685 (767)
Q Consensus 614 g~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 685 (767)
.+.++|++.+.+... ..++.+...|+..|.. ..++++|+++|+++.+.+ ++.....|+.+|.. ..+
T Consensus 37 ~~~~~a~~~~~~aa~---~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d 110 (133)
T d1klxa_ 37 INKQKLFQYLSKACE---LNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN 110 (133)
T ss_dssp SCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred cCHHHHHHHHhhhhc---ccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence 344455444444221 2334445555555554 245667777777766654 23455556666654 345
Q ss_pred hhHHHHHHHHHHHCC
Q 047305 686 LDLAMDVFLYTLKNG 700 (767)
Q Consensus 686 ~~~A~~~~~~~~~~~ 700 (767)
.++|..+|+++.+.|
T Consensus 111 ~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 111 EKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 666777776666554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.73 E-value=0.0031 Score=48.00 Aligned_cols=76 Identities=12% Similarity=0.056 Sum_probs=60.6
Q ss_pred ccchHHHHHHHhhcC---CHHHHHHHHHHHHHcCCCCC-hHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 047305 635 LAPYTIWLIGLCQDG---QVKEALNIFSVLVECKAIVT-PPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFILRPRVCNY 710 (767)
Q Consensus 635 ~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 710 (767)
+.+-...+|++.+.. +.++|+.+++++.+.+ |.+ ..++..|+-+|++.|++++|+++++++++.. |++.....
T Consensus 35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie--P~n~qA~~ 111 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE--RNNKQVGA 111 (124)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC--CCcHHHHH
Confidence 345788999998774 5679999999998776 444 4788999999999999999999999999854 87765554
Q ss_pred HHH
Q 047305 711 LLR 713 (767)
Q Consensus 711 l~~ 713 (767)
+..
T Consensus 112 L~~ 114 (124)
T d2pqrb1 112 LKS 114 (124)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.72 E-value=0.31 Score=47.65 Aligned_cols=82 Identities=9% Similarity=0.019 Sum_probs=40.7
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccchHHHHHHHHhcCCHHHHHHHH
Q 047305 544 VDREEDAFRIFGQMPQNGCTPSPAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDESMKSIEEFLQKGEVENAIQGL 623 (767)
Q Consensus 544 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 623 (767)
.+..+.+...+......+ .+.......+......+++..+...+..+.......+...+.++.++...|+.++|...+
T Consensus 265 ~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~ 342 (450)
T d1qsaa1 265 NDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEIL 342 (450)
T ss_dssp TTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHH
Confidence 344455555555444322 233333333444445566666666555543332333334455666666666666665555
Q ss_pred HHhh
Q 047305 624 LEMD 627 (767)
Q Consensus 624 ~~~~ 627 (767)
..+.
T Consensus 343 ~~~a 346 (450)
T d1qsaa1 343 HQLM 346 (450)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5543
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.50 E-value=0.048 Score=42.90 Aligned_cols=113 Identities=12% Similarity=0.016 Sum_probs=76.6
Q ss_pred CHHHHHHHHHHhhhcCCCCCccchHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh----cCChhHHH
Q 047305 615 EVENAIQGLLEMDFKLNDFQLAPYTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCK----RGYLDLAM 690 (767)
Q Consensus 615 ~~~~A~~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 690 (767)
++++|++.+.+.... .++..+..|+. ....+.++|+.+++++.+.| ++.+...|+..|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~---g~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACEL---NEMFGCLSLVS--NSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHT---TCTTHHHHHHT--CTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHC---CChhhhhhhcc--ccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 445555555553222 12233444442 34568999999999998876 45677889988875 56789999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhhcCC--ccHHHHHHHHHHHHHcCC
Q 047305 691 DVFLYTLKNGFILRPRVCNYLLRSLLFSKD--NKKVHAYHLLCRMKSVGY 738 (767)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~a~~~~~~~~~~~~ 738 (767)
++|+++.+.+ ++.....+...+....| ++.++|..++++..+.|.
T Consensus 80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 9999998876 45555555555543222 338999999999988775
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.10 E-value=0.17 Score=37.67 Aligned_cols=64 Identities=17% Similarity=0.073 Sum_probs=51.8
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 047305 638 YTIWLIGLCQDGQVKEALNIFSVLVECKAIVTPPSCVKLIHGLCKRGYLDLAMDVFLYTLKNGFI 702 (767)
Q Consensus 638 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 702 (767)
.+....++..+|+-+.-.++++.+.+.+ .++|.....++.+|.+.|...++-+++.++-++|.+
T Consensus 89 vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 89 VNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 4455567778888888888888887765 888999999999999999999999999999888754
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.67 E-value=0.06 Score=40.73 Aligned_cols=76 Identities=9% Similarity=0.026 Sum_probs=51.1
Q ss_pred CCChhhHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCCC-HhhHHHHHHHHHhcCChhHHHHHHHHHHhccCCCccch
Q 047305 528 RPDSVTYGTLINGLQRVDR---EEDAFRIFGQMPQNGCTPS-PAVYKSLMTWSCRRRKFSLAFSLWLQYLRDISGRDDES 603 (767)
Q Consensus 528 ~p~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 603 (767)
.|...+--..+.++.++.+ .++|+.+++.+.+.+ +.+ ...+-.+.-+|.+.|++++|...++++++..|.+..+.
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~ 110 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 110 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHH
Confidence 3445555566666766544 457888888877643 223 24545566667888888888888888888888887765
Q ss_pred H
Q 047305 604 M 604 (767)
Q Consensus 604 ~ 604 (767)
.
T Consensus 111 ~ 111 (124)
T d2pqrb1 111 A 111 (124)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.16 E-value=4 Score=39.30 Aligned_cols=53 Identities=8% Similarity=-0.086 Sum_probs=42.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 047305 385 ICGMCRNGMVDDAQKLFNKMEKAGCFPSVGMFNALIDGLCKAGELEKANLLFYKME 440 (767)
Q Consensus 385 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 440 (767)
+..+...|....|...+..+... .+......+.....+.|.++.|+....+..
T Consensus 388 a~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 388 VRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 45567889999999999888754 366677778888889999999998877763
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=87.88 E-value=4 Score=30.21 Aligned_cols=121 Identities=17% Similarity=0.102 Sum_probs=62.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-C----------------CCCCHHHHH
Q 047305 285 RAKRYDEAYAWYRKMFEEKIEPDVVLYGVMIRGLSEAGKVKDAMKLLSDMRER-G----------------IVPDTYCYN 347 (767)
Q Consensus 285 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~----------------~~~~~~~~~ 347 (767)
-.|.+++..+++.+.... .+..-||.++--....-+-+-..++++..-+. + ...+...+.
T Consensus 14 ldG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~n~~se~vd 90 (161)
T d1wy6a1 14 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVN 90 (161)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHH
T ss_pred HhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHhcchHHHHH
Confidence 345555555555555543 13444454444444444444444444443221 0 011233344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 047305 348 ALIKGFCDLGLLDQARSLQVEIWKRDSLPNTHTFTILICGMCRNGMVDDAQKLFNKMEKAGC 409 (767)
Q Consensus 348 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 409 (767)
..+..+...|+-++-.+++..+.+.+ ++++.....+..+|.+.|...++-+++.+.-+.|.
T Consensus 91 lALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 91 KALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 45555566666666666666655533 35556666666666666666666666666666553
|
| >d1bpoa1 a.118.1.4 (A:331-487) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy-chain linker domain domain: Clathrin heavy-chain linker domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.95 E-value=6 Score=30.45 Aligned_cols=119 Identities=12% Similarity=0.071 Sum_probs=70.7
Q ss_pred HHHHHHHhcCCChhHHHHHHHHhhhCCCCCChhhHHHHHHHHhcCCCchHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc
Q 047305 32 TTVTSVIMKTKNPQVGFRFFIWAAKRKRLRSFASNSAVISMLLKPNGFDLYWQTLDELRSGNVSVVSDVFFVLISGYYKV 111 (767)
Q Consensus 32 ~~~~~~l~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 111 (767)
+++-.++...++++.|++ ++.+.+-...-..|..-+..+...|+|.+|..+--.... |+-.++.|.+.+-..-...
T Consensus 3 ~ivpyi~~~l~n~~la~~---lA~r~~LpGAd~l~~~~F~~lf~~g~y~eAA~~aA~sP~-giLRt~~Ti~rFk~~~~~p 78 (157)
T d1bpoa1 3 NIIPYITNVLQNPDLALR---MAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQP 78 (157)
T ss_dssp THHHHHHHTTCCHHHHHH---HHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCT
T ss_pred chHHHHHhccCCHHHHHH---HHHhcCCCChHHHHHHHHHHHHHcCCHHHHHHHHHhCCc-ccccCHHHHHHHHcCCCCC
Confidence 456667777788887744 444444333666788888888888888888777655443 3445666665555444445
Q ss_pred CChhHHHHHHHHhhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 047305 112 GDCEKALESFGKMKEFDCQPDVYIYNAVLNIAFRKQLFLLALAV 155 (767)
Q Consensus 112 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 155 (767)
|...-.+..|..+.+.| +.|..----+.+.....|+.+-..+.
T Consensus 79 Gq~spLL~YF~~Ll~~~-~LN~~ESlEl~r~vL~q~r~~lve~W 121 (157)
T d1bpoa1 79 GQTSPLLQYFGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKW 121 (157)
T ss_dssp TSCCHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcC-CCchHHhHHHHHHHHhcCcHHHHHHH
Confidence 55555666666666554 34444333445555555555444433
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.92 E-value=4.4 Score=28.37 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=12.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 047305 127 FDCQPDVYIYNAVLNIAFRKQLFLLALAVYY 157 (767)
Q Consensus 127 ~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 157 (767)
..+.|++....+.+++|.+.+++..|.++++
T Consensus 35 ~DlVPeP~Ii~aALrAcRRvND~alAVR~lE 65 (105)
T d1v54e_ 35 YDLVPEPKIIDAALRACRRLNDFASAVRILE 65 (105)
T ss_dssp SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3333444443344444433344444443333
|