Citrus Sinensis ID: 047408
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 830 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SN39 | 871 | Pentatricopeptide repeat- | yes | no | 0.919 | 0.876 | 0.626 | 0.0 | |
| Q9M9E2 | 866 | Pentatricopeptide repeat- | no | no | 0.903 | 0.866 | 0.378 | 1e-160 | |
| Q9LFL5 | 850 | Pentatricopeptide repeat- | no | no | 0.863 | 0.843 | 0.392 | 1e-159 | |
| Q3E6Q1 | 809 | Pentatricopeptide repeat- | no | no | 0.890 | 0.913 | 0.372 | 1e-158 | |
| Q9SS60 | 882 | Pentatricopeptide repeat- | no | no | 0.919 | 0.865 | 0.387 | 1e-157 | |
| Q7Y211 | 890 | Pentatricopeptide repeat- | no | no | 0.889 | 0.829 | 0.371 | 1e-156 | |
| Q9M1V3 | 960 | Pentatricopeptide repeat- | no | no | 0.919 | 0.794 | 0.372 | 1e-156 | |
| O81767 | 823 | Pentatricopeptide repeat- | no | no | 0.869 | 0.877 | 0.371 | 1e-148 | |
| Q9LW63 | 715 | Putative pentatricopeptid | no | no | 0.775 | 0.900 | 0.377 | 1e-143 | |
| Q9LIQ7 | 633 | Pentatricopeptide repeat- | no | no | 0.672 | 0.881 | 0.417 | 1e-143 |
| >sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1043 bits (2696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/808 (62%), Positives = 625/808 (77%), Gaps = 45/808 (5%)
Query: 67 NAEIGRFCEVGNLEKAMEVLYSSEKSKIDTKTYCSILQLCADLKSLEDGKKVHSIICESG 126
N ++ RFCE GNLE A+++L S K ID +T CS+LQLCAD KSL+DGK+V + I +G
Sbjct: 65 NTQLRRFCESGNLENAVKLLCVSGKWDIDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNG 124
Query: 127 IVIDDGVLGSKLVFMFVTCGDLKEGRRVFNKIDNGKVFIWNLLMHEYSKTGNFKESLYLF 186
VID LGSKL M+ CGDLKE RVF+++ K WN+LM+E +K+G+F S+ LF
Sbjct: 125 FVIDSN-LGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLF 183
Query: 187 KKMQSLGIAADSYTFSCVLKCLAV------------------------VGNS-------- 214
KKM S G+ DSYTFSCV K + VGNS
Sbjct: 184 KKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKN 243
Query: 215 RRVKDAHKLFDELSDRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVL 274
+RV A K+FDE+++RDV+SWN +I+GY++NG+AEKGL VF +ML G +DLAT+V+V
Sbjct: 244 QRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVF 303
Query: 275 SGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSVV 334
+GCA+ + GRAVH+ +KACFS+E F NTLLDMYSKCGDLD A VF +M +RSVV
Sbjct: 304 AGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVV 363
Query: 335 SWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYI 394
S+TSMIAGYAREG+ A++LF M EGI PDVY +T++L+ CA LL+ GK VH++I
Sbjct: 364 SYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWI 423
Query: 395 KENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIG----------AL 444
KEND+ ++VSNALMDMYAKCGSM +AE VF++M VKDI+SWNT+IG AL
Sbjct: 424 KENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEAL 483
Query: 445 DLFVAMLQN--FEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDM 502
LF +L+ F PD T+AC+LPACASL+A ++GREIHGYI+R+G +DR+VAN++VDM
Sbjct: 484 SLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDM 543
Query: 503 YVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSF 562
Y KCG L+LA LFD I +KDL+SWT+MIAGYGMHGFG +AIA FN MRQAGIE DE+SF
Sbjct: 544 YAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISF 603
Query: 563 ISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMP 622
+S+LYACSHSGLVDEGWRFFN+MR+EC IEP +EHYAC+VD+L+RTG+L +AYRFIE MP
Sbjct: 604 VSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMP 663
Query: 623 VAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKK 682
+ PDATIWG+LLCGCRIHH+VKLAEKVAE VFELEP+NTGYYVL+AN+YAEAEKWE+VK+
Sbjct: 664 IPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKR 723
Query: 683 LREKISRRGLKKNPGCSWIEIKGKVNIFVAGGSSHPHAKKIESLLKRLRLEMKREGYFPK 742
LR++I +RGL+KNPGCSWIEIKG+VNIFVAG SS+P + IE+ L+++R M EGY P
Sbjct: 724 LRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPL 783
Query: 743 TRYALINADEMEKEVALCGHSEKLAMAFGILNLPAGQTIRVTKNLRVCGDCHEMAKFMSK 802
T+YALI+A+EMEKE ALCGHSEKLAMA GI++ G+ IRVTKNLRVCGDCHEMAKFMSK
Sbjct: 784 TKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSK 843
Query: 803 TARREIVLRDSNRFHHFKDGRCSCRGFW 830
RREIVLRDSNRFH FKDG CSCRGFW
Sbjct: 844 LTRREIVLRDSNRFHQFKDGHCSCRGFW 871
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M9E2|PPR45_ARATH Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H73 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 565 bits (1457), Expect = e-160, Method: Compositional matrix adjust.
Identities = 303/800 (37%), Positives = 469/800 (58%), Gaps = 50/800 (6%)
Query: 73 FCEVGNLEKAMEVLYSSEKSKI--DTKTYCSILQLCADLKSLEDGKKVHSIICESGIVID 130
C G LE+AM++L S ++ ++ D + ++++LC ++ E+G KV+SI S +
Sbjct: 69 LCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMSSL- 127
Query: 131 DGV-LGSKLVFMFVTCGDLKEGRRVFNKIDNGKVFIWNLLMHEYSKTGNFKESLYLFKKM 189
GV LG+ + MFV G+L + VF K+ +F WN+L+ Y+K G F E++ L+ +M
Sbjct: 128 -GVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRM 186
Query: 190 QSLG-IAADSYTFSCVLKCLAVVGNSRR-------------------------------- 216
+G + D YTF CVL+ + + R
Sbjct: 187 LWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGD 246
Query: 217 VKDAHKLFDELSDRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSG 276
VK A LFD + RD++SWN MISGY NG+ +GLE+F M L + DL T+ +V+S
Sbjct: 247 VKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISA 306
Query: 277 CANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSVVSW 336
C G GR +HA+ + F+ +IS N+L MY G A ++F +M + +VSW
Sbjct: 307 CELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSW 366
Query: 337 TSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKE 396
T+MI+GY + D AI +R M ++ ++PD + ++L ACA G L+ G ++H +
Sbjct: 367 TTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIK 426
Query: 397 NDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDL----FVAML- 451
+ S + V+N L++MY+KC + A +F+ +P K+++SW ++I L L F A++
Sbjct: 427 ARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIF 486
Query: 452 -----QNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKC 506
+P+ +T+ L ACA + AL G+EIH ++LR G+ D + NA++DMYV+C
Sbjct: 487 LRQMKMTLQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRC 546
Query: 507 GVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVL 566
G + A S F+ KD+ SW I++ GY G G + F+ M ++ + PDE++FIS+L
Sbjct: 547 GRMNTAWSQFNS-QKKDVTSWNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITFISLL 605
Query: 567 YACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMPVAPD 626
CS S +V +G +F+ M + + P L+HYAC+VDLL R G L EA++FI+ MPV PD
Sbjct: 606 CGCSKSQMVRQGLMYFSKME-DYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPD 664
Query: 627 ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREK 686
+WG+LL CRIHH++ L E A+H+FEL+ + GYY+LL N+YA+ KW EV K+R
Sbjct: 665 PAVWGALLNACRIHHKIDLGELSAQHIFELDKKSVGYYILLCNLYADCGKWREVAKVRRM 724
Query: 687 ISRRGLKKNPGCSWIEIKGKVNIFVAGGSSHPHAKKIESLLKRLRLEMKREGYFPKTRYA 746
+ GL + GCSW+E+KGKV+ F++ HP K+I ++L+ +M G + +
Sbjct: 725 MKENGLTVDAGCSWVEVKGKVHAFLSDDKYHPQTKEINTVLEGFYEKMSEVGLTKISESS 784
Query: 747 LINADEMEKEVALCGHSEKLAMAFGILNLPAGQTIRVTKNLRVCGDCHEMAKFMSKTARR 806
++ E+ ++ CGHSE+ A+AFG++N G I VTKNL +C +CH+ KF+SKT RR
Sbjct: 785 SMDETEISRDEIFCGHSERKAIAFGLINTVPGMPIWVTKNLSMCENCHDTVKFISKTVRR 844
Query: 807 EIVLRDSNRFHHFKDGRCSC 826
EI +RD+ FHHFKDG CSC
Sbjct: 845 EISVRDAEHFHHFKDGECSC 864
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFL5|PP390_ARATH Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 564 bits (1454), Expect = e-159, Method: Compositional matrix adjust.
Identities = 320/816 (39%), Positives = 453/816 (55%), Gaps = 99/816 (12%)
Query: 110 KSLEDGKKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEG---RRVFNKIDNGKVFIW 166
K++ K +H + GI+ + L S L+ +++ G L R F D G V+ W
Sbjct: 39 KTISQVKLIHQKLLSFGILTLN--LTSHLISTYISVGCLSHAVSLLRRFPPSDAG-VYHW 95
Query: 167 NLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLA----------------- 209
N L+ Y G + LYLF M SL D+YTF V K
Sbjct: 96 NSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLV 155
Query: 210 -------VVGNS--------RRVKDAHKLFDELSDRDVVSWNCMISGYIANGVAEKGLEV 254
VGN+ R + DA K+FDE+S DVVSWN +I Y G + LE+
Sbjct: 156 TGFISNVFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEM 215
Query: 255 FKEMLN-LGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYS 313
F M N G D T+V VL CA+ G G+ +H FA+ + + + N L+DMY+
Sbjct: 216 FSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYA 275
Query: 314 KCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLF----------------- 356
KCG +D A VF M + VVSW +M+AGY++ G F+ A+RLF
Sbjct: 276 KCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSA 335
Query: 357 ------------------RGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDY----- 393
R M+ GI+P+ + S+L CA G L GK++H Y
Sbjct: 336 AISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYP 395
Query: 394 --IKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVK--DIVSWNTMIG------- 442
+++N V N L+DMYAKC + A ++F+ + K D+V+W MIG
Sbjct: 396 IDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGD 455
Query: 443 ---ALDLFVAMLQ---NFEPDGVTMACILPACASLAALERGREIHGYILRHGISA-DRNV 495
AL+L M + P+ T++C L ACASLAAL G++IH Y LR+ +A V
Sbjct: 456 ANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFV 515
Query: 496 ANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGI 555
+N ++DMY KCG + AR +FD + AK+ ++WT ++ GYGMHG+G +A+ F++MR+ G
Sbjct: 516 SNCLIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGF 575
Query: 556 EPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAY 615
+ D V+ + VLYACSHSG++D+G +FN M+ + P EHYAC+VDLL R G L+ A
Sbjct: 576 KLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAAL 635
Query: 616 RFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAE 675
R IE MP+ P +W + L CRIH +V+L E AE + EL ++ G Y LL+N+YA A
Sbjct: 636 RLIEEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAG 695
Query: 676 KWEEVKKLREKISRRGLKKNPGCSWIE-IKGKVNIFVAGGSSHPHAKKIESLLKRLRLEM 734
+W++V ++R + +G+KK PGCSW+E IKG FV G +HPHAK+I +L +
Sbjct: 696 RWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFV-GDKTHPHAKEIYQVLLDHMQRI 754
Query: 735 KREGYFPKTRYALINADEMEKEVALCGHSEKLAMAFGILNLPAGQTIRVTKNLRVCGDCH 794
K GY P+T +AL + D+ EK+ L HSEKLA+A+GIL P G IR+TKNLRVCGDCH
Sbjct: 755 KDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCH 814
Query: 795 EMAKFMSKTARREIVLRDSNRFHHFKDGRCSCRGFW 830
+MS+ +I+LRDS+RFHHFK+G CSC+G+W
Sbjct: 815 TAFTYMSRIIDHDIILRDSSRFHHFKNGSCSCKGYW 850
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 560 bits (1442), Expect = e-158, Method: Compositional matrix adjust.
Identities = 295/791 (37%), Positives = 457/791 (57%), Gaps = 52/791 (6%)
Query: 87 YSSEKSKIDTKTY----CSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMF 142
+ SE++ I Y +L+ C+ LK L +++ ++ ++G+ + +KLV +F
Sbjct: 24 FLSERNYIPANVYEHPAALLLERCSSLKEL---RQILPLVFKNGLY-QEHFFQTKLVSLF 79
Query: 143 VTCGDLKEGRRVFNKIDNGKVFIWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFS 202
G + E RVF ID+ +++ ++ ++K + ++L F +M+ + Y F+
Sbjct: 80 CRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFT 139
Query: 203 CVLKC--------------------------LAVVG------NSRRVKDAHKLFDELSDR 230
+LK A+ G R+V +A K+FD + +R
Sbjct: 140 YLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPER 199
Query: 231 DVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVH 290
D+VSWN +++GY NG+A LE+ K M T+V+VL + + G+ +H
Sbjct: 200 DLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIH 259
Query: 291 AFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFD 350
+A+++ F ++ + L+DMY+KCG L+ A ++F+ M ER+VVSW SMI Y +
Sbjct: 260 GYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPK 319
Query: 351 GAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALM 410
A+ +F+ M+ EG++P ++ LHACA G LE G+ +H E + ++ V N+L+
Sbjct: 320 EAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLI 379
Query: 411 DMYAKCGSMADAESVFNQMPVKDIVSWNTMI----------GALDLFVAML-QNFEPDGV 459
MY KC + A S+F ++ + +VSWN MI AL+ F M + +PD
Sbjct: 380 SMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTF 439
Query: 460 TMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMI 519
T ++ A A L+ + IHG ++R + + V A+VDMY KCG +++AR +FDM+
Sbjct: 440 TYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMM 499
Query: 520 PAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGW 579
+ + +W MI GYG HGFG A+ F +M++ I+P+ V+F+SV+ ACSHSGLV+ G
Sbjct: 500 SERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGL 559
Query: 580 RFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRI 639
+ F MM+ +IE ++HY MVDLL R G L+EA+ FI MPV P ++G++L C+I
Sbjct: 560 KCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQI 619
Query: 640 HHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCS 699
H V AEK AE +FEL PD+ GY+VLLAN+Y A WE+V ++R + R+GL+K PGCS
Sbjct: 620 HKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCS 679
Query: 700 WIEIKGKVNIFVAGGSSHPHAKKIESLLKRLRLEMKREGYFPKTRYALINADEMEKEVAL 759
+EIK +V+ F +G ++HP +KKI + L++L +K GY P T L +++ KE L
Sbjct: 680 MVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVLGVENDV-KEQLL 738
Query: 760 CGHSEKLAMAFGILNLPAGQTIRVTKNLRVCGDCHEMAKFMSKTARREIVLRDSNRFHHF 819
HSEKLA++FG+LN AG TI V KNLRVC DCH K++S REIV+RD RFHHF
Sbjct: 739 STHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHF 798
Query: 820 KDGRCSCRGFW 830
K+G CSC +W
Sbjct: 799 KNGACSCGDYW 809
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 555 bits (1431), Expect = e-157, Method: Compositional matrix adjust.
Identities = 314/811 (38%), Positives = 462/811 (56%), Gaps = 48/811 (5%)
Query: 66 YNAEIGRFCEVGNLEKAMEVLYSSEKSKI--DTKTYCSILQLCADLKSLEDGKKVHSIIC 123
+N+ I F + G +A+E +SK+ D T+ S+++ CA L E G V+ I
Sbjct: 74 WNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQIL 133
Query: 124 ESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNKIDNGKVFIWNLLMHEYSKTGNFKESL 183
+ G D +G+ LV M+ G L R+VF+++ + WN L+ YS G ++E+L
Sbjct: 134 DMGFE-SDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEAL 192
Query: 184 YLFKKMQSLGIAADSYTFSCVLKC---LAVVGNS-------------------------- 214
++ ++++ I DS+T S VL L VV
Sbjct: 193 EIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMY 252
Query: 215 ---RRVKDAHKLFDELSDRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMV 271
RR DA ++FDE+ RD VS+N MI GY+ + E+ + +F E L+ F DL T+
Sbjct: 253 LKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENLD-QFKPDLLTVS 311
Query: 272 TVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGER 331
+VL C + L + ++ + LKA F E + N L+D+Y+KCGD+ A VF M +
Sbjct: 312 SVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECK 371
Query: 332 SVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVH 391
VSW S+I+GY + G A++LF+ M+ + D ++ L+ GK +H
Sbjct: 372 DTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLH 431
Query: 392 DYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGA---LDLFV 448
++ + L VSNAL+DMYAKCG + D+ +F+ M D V+WNT+I A F
Sbjct: 432 SNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFA 491
Query: 449 AMLQ--------NFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIV 500
LQ PD T LP CASLAA G+EIH +LR G ++ + NA++
Sbjct: 492 TGLQVTTQMRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALI 551
Query: 501 DMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV 560
+MY KCG L + +F+ + +D+++WT MI YGM+G G A+ TF DM ++GI PD V
Sbjct: 552 EMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSV 611
Query: 561 SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEM 620
FI+++YACSHSGLVDEG F M+ I+P +EHYAC+VDLLSR+ +S+A FI+
Sbjct: 612 VFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQA 671
Query: 621 MPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEV 680
MP+ PDA+IW S+L CR +++ AE+V+ + EL PD+ GY +L +N YA KW++V
Sbjct: 672 MPIKPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKV 731
Query: 681 KKLREKISRRGLKKNPGCSWIEIKGKVNIFVAGGSSHPHAKKIESLLKRLRLEMKREGYF 740
+R+ + + + KNPG SWIE+ V++F +G S P ++ I L+ L M +EGY
Sbjct: 732 SLIRKSLKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSLEILYSLMAKEGYI 791
Query: 741 PKTRYALIN-ADEMEKEVALCGHSEKLAMAFGILNLPAGQTIRVTKNLRVCGDCHEMAKF 799
P R N +E EK +CGHSE+LA+AFG+LN G ++V KNLRVCGDCHE+ K
Sbjct: 792 PDPREVSQNLEEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQVMKNLRVCGDCHEVTKL 851
Query: 800 MSKTARREIVLRDSNRFHHFKDGRCSCRGFW 830
+SK REI++RD+NRFH FKDG CSC+ W
Sbjct: 852 ISKIVGREILVRDANRFHLFKDGTCSCKDRW 882
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 554 bits (1427), Expect = e-156, Method: Compositional matrix adjust.
Identities = 296/797 (37%), Positives = 447/797 (56%), Gaps = 59/797 (7%)
Query: 93 KIDTKTYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGR 152
K D + ++L+ ADL+ +E GK++H+ + + G +D + + LV ++ CGD
Sbjct: 94 KPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVY 153
Query: 153 RVFNKIDNGKVFIWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTF-SCVLKC---- 207
+VF++I WN L+ ++ +L F+ M + S+T S V C
Sbjct: 154 KVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLP 213
Query: 208 -----------------------------LAVVGNSRRVKDAHKLFDELSDRDVVSWNCM 238
+A+ G ++ + L RD+V+WN +
Sbjct: 214 MPEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTV 273
Query: 239 ISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKACF 298
+S N + LE +EM+ G D T+ +VL C++ L G+ +HA+ALK
Sbjct: 274 LSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGS 333
Query: 299 SKEISF-NNTLLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFR 357
E SF + L+DMY C + RVF+ M +R + W +MIAGY++ A+ LF
Sbjct: 334 LDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFI 393
Query: 358 GMVRE-GIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKC 416
GM G+ + + ++ AC G + +H ++ + + +V N LMDMY++
Sbjct: 394 GMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRL 453
Query: 417 GSMADAESVFNQMPVKDIVSWNTMIGALD---------LFVAMLQNFE------------ 455
G + A +F +M +D+V+WNTMI L + +QN E
Sbjct: 454 GKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSL 513
Query: 456 -PDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARS 514
P+ +T+ ILP+CA+L+AL +G+EIH Y +++ ++ D V +A+VDMY KCG L ++R
Sbjct: 514 KPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRK 573
Query: 515 LFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGL 574
+FD IP K++I+W ++I YGMHG G +AI M G++P+EV+FISV ACSHSG+
Sbjct: 574 VFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGM 633
Query: 575 VDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMPVAPD-ATIWGSL 633
VDEG R F +M+ + +EP +HYAC+VDLL R G + EAY+ + MMP + A W SL
Sbjct: 634 VDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSL 693
Query: 634 LCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLK 693
L RIH+ +++ E A+++ +LEP+ +YVLLAN+Y+ A W++ ++R + +G++
Sbjct: 694 LGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVR 753
Query: 694 KNPGCSWIEIKGKVNIFVAGGSSHPHAKKIESLLKRLRLEMKREGYFPKTRYALINADEM 753
K PGCSWIE +V+ FVAG SSHP ++K+ L+ L M++EGY P T L N +E
Sbjct: 754 KEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEED 813
Query: 754 EKEVALCGHSEKLAMAFGILNLPAGQTIRVTKNLRVCGDCHEMAKFMSKTARREIVLRDS 813
EKE+ LCGHSEKLA+AFGILN G IRV KNLRVC DCH KF+SK REI+LRD
Sbjct: 814 EKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDV 873
Query: 814 NRFHHFKDGRCSCRGFW 830
RFH FK+G CSC +W
Sbjct: 874 RRFHRFKNGTCSCGDYW 890
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M1V3|PP296_ARATH Pentatricopeptide repeat-containing protein At3g63370 OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 551 bits (1420), Expect = e-156, Method: Compositional matrix adjust.
Identities = 303/813 (37%), Positives = 469/813 (57%), Gaps = 50/813 (6%)
Query: 66 YNAEIGRFCEVGNLEKAMEVLYS--SEKSKIDTKTYCSILQLCADLKSLEDGKKVHSIIC 123
+N IG + G A+ + ++ E + ++ ++L+ CA L+ + G ++HS++
Sbjct: 150 WNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLLV 209
Query: 124 ESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNKI-DNGKVFIWNLLMHEYSKTGNFKES 182
+ G G + + LV M+ DL RR+F+ + G +WN ++ YS +G E+
Sbjct: 210 KLGYH-STGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLET 268
Query: 183 LYLFKKMQSLGIAADSYTF--------------------SCVLK----------CLAVVG 212
L LF++M G A +SYT + VLK C A++
Sbjct: 269 LELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIA 328
Query: 213 NSRR---VKDAHKLFDELSDRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLAT 269
R + A ++ ++++ DVV+WN +I GY+ N + ++ LE F +M+ G D +
Sbjct: 329 MYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVS 388
Query: 270 MVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMG 329
M ++++ L+ G +HA+ +K + + NTL+DMYSKC R F +M
Sbjct: 389 MTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMH 448
Query: 330 ERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKD 389
++ ++SWT++IAGYA+ A+ LFR + ++ +E D + SIL A + + I K+
Sbjct: 449 DKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKE 508
Query: 390 VHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIG------- 442
+H +I + ++ + N L+D+Y KC +M A VF + KD+VSW +MI
Sbjct: 509 IHCHILRKGLLDTV-IQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGN 567
Query: 443 ---ALDLFVAMLQN-FEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANA 498
A++LF M++ D V + CIL A ASL+AL +GREIH Y+LR G + ++A A
Sbjct: 568 ESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVA 627
Query: 499 IVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPD 558
+VDMY CG L A+++FD I K L+ +T MI YGMHG G A+ F+ MR + PD
Sbjct: 628 VVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPD 687
Query: 559 EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFI 618
+SF+++LYACSH+GL+DEG F +M +E +EP EHY C+VD+L R + EA+ F+
Sbjct: 688 HISFLALLYACSHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFV 747
Query: 619 EMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWE 678
+MM P A +W +LL CR H E ++ E A+ + ELEP N G VL++NV+AE +W
Sbjct: 748 KMMKTEPTAEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWN 807
Query: 679 EVKKLREKISRRGLKKNPGCSWIEIKGKVNIFVAGGSSHPHAKKIESLLKRLRLEMKRE- 737
+V+K+R K+ G++K+PGCSWIE+ GKV+ F A SHP +K+I L + +++RE
Sbjct: 808 DVEKVRAKMKASGMEKHPGCSWIEMDGKVHKFTARDKSHPESKEIYEKLSEVTRKLEREV 867
Query: 738 GYFPKTRYALINADEMEKEVALCGHSEKLAMAFGILNLPAGQTIRVTKNLRVCGDCHEMA 797
GY T++ L N DE EK L GHSE++A+A+G+L P +R+TKNLRVC DCH
Sbjct: 868 GYVADTKFVLHNVDEGEKVQMLHGHSERIAIAYGLLRTPDRACLRITKNLRVCRDCHTFC 927
Query: 798 KFMSKTARREIVLRDSNRFHHFKDGRCSCRGFW 830
K +SK RR+IV+RD+NRFHHF+ G CSC W
Sbjct: 928 KLVSKLFRRDIVMRDANRFHHFESGLCSCGDSW 960
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O81767|PP348_ARATH Pentatricopeptide repeat-containing protein At4g33990 OS=Arabidopsis thaliana GN=EMB2758 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 526 bits (1356), Expect = e-148, Method: Compositional matrix adjust.
Identities = 287/773 (37%), Positives = 439/773 (56%), Gaps = 51/773 (6%)
Query: 101 SILQLCADLKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNKIDN 160
++ + C +L+S K +H+ + S I + + +KLV ++ G++ R F+ I N
Sbjct: 59 TLFRYCTNLQS---AKCLHARLVVSK-QIQNVCISAKLVNLYCYLGNVALARHTFDHIQN 114
Query: 161 GKVFIWNLLMHEYSKTGNFKESLYLFKK-MQSLGIAADSYTFSCVLK------------C 207
V+ WNL++ Y + GN E + F M S G+ D TF VLK C
Sbjct: 115 RDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVIDGNKIHC 174
Query: 208 LAV-----------------VGNSRRVKDAHKLFDELSDRDVVSWNCMISGYIANGVAEK 250
LA+ + V +A LFDE+ RD+ SWN MISGY +G A++
Sbjct: 175 LALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKE 234
Query: 251 GLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLD 310
L + + + D T+V++LS C G G +H++++K E+ +N L+D
Sbjct: 235 ALTLSNGLRAM----DSVTVVSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLID 290
Query: 311 MYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYA 370
+Y++ G L +VF++M R ++SW S+I Y AI LF+ M I+PD
Sbjct: 291 LYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLT 350
Query: 371 ITSILHACACDGLLEIGKDVHDY-IKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQM 429
+ S+ + G + + V + +++ + + NA++ MYAK G + A +VFN +
Sbjct: 351 LISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWL 410
Query: 430 PVKDIVSWNTMIG----------ALDLFVAMLQNFE--PDGVTMACILPACASLAALERG 477
P D++SWNT+I A++++ M + E + T +LPAC+ AL +G
Sbjct: 411 PNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQG 470
Query: 478 REIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMH 537
++HG +L++G+ D V ++ DMY KCG L A SLF IP + + W +IA +G H
Sbjct: 471 MKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFH 530
Query: 538 GFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEH 597
G G A+ F +M G++PD ++F+++L ACSHSGLVDEG F MM+ + I P L+H
Sbjct: 531 GHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKH 590
Query: 598 YACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELE 657
Y CMVD+ R G L A +FI+ M + PDA+IWG+LL CR+H V L + +EH+FE+E
Sbjct: 591 YGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVE 650
Query: 658 PDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIEIKGKVNIFVAGGSSH 717
P++ GY+VLL+N+YA A KWE V ++R +GL+K PG S +E+ KV +F G +H
Sbjct: 651 PEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTH 710
Query: 718 PHAKKIESLLKRLRLEMKREGYFPKTRYALINADEMEKEVALCGHSEKLAMAFGILNLPA 777
P +++ L L+ ++K GY P R+ L + ++ EKE L HSE+LA+AF ++ PA
Sbjct: 711 PMYEEMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATPA 770
Query: 778 GQTIRVTKNLRVCGDCHEMAKFMSKTARREIVLRDSNRFHHFKDGRCSCRGFW 830
TIR+ KNLRVCGDCH + KF+SK REI++RDSNRFHHFK+G CSC +W
Sbjct: 771 KTTIRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 511 bits (1315), Expect = e-143, Method: Compositional matrix adjust.
Identities = 261/691 (37%), Positives = 401/691 (58%), Gaps = 47/691 (6%)
Query: 187 KKMQSLGIAADSYTFSCVLKCLAVVGNSRRVKDAHKLFDELSDRDVVSWNCMISGYIANG 246
K++ + I S + + +++ N + + +A LF L V++W +I +
Sbjct: 25 KQLHAQFIRTQSLSHTSASIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFTDQS 84
Query: 247 VAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNN 306
+ K L F EM G D +VL C L FG +VH F ++ ++ N
Sbjct: 85 LFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGN 144
Query: 307 TLLDMYSK-----------------------CGD-------------LDGAIRVFEKMGE 330
L++MY+K GD +D RVFE M
Sbjct: 145 ALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVFEVMPR 204
Query: 331 RSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDV 390
+ VVS+ ++IAGYA+ G+++ A+R+ R M ++PD + ++S+L + + GK++
Sbjct: 205 KDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVIKGKEI 264
Query: 391 HDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIG-------- 442
H Y+ + S +Y+ ++L+DMYAK + D+E VF+++ +D +SWN+++
Sbjct: 265 HGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRY 324
Query: 443 --ALDLFVAMLQ-NFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAI 499
AL LF M+ +P V + ++PACA LA L G+++HGY+LR G ++ +A+A+
Sbjct: 325 NEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASAL 384
Query: 500 VDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDE 559
VDMY KCG + AR +FD + D +SWT +I G+ +HG G +A++ F +M++ G++P++
Sbjct: 385 VDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQ 444
Query: 560 VSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIE 619
V+F++VL ACSH GLVDE W +FN M + +LEHYA + DLL R G L EAY FI
Sbjct: 445 VAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFIS 504
Query: 620 MMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEE 679
M V P ++W +LL C +H ++LAEKVAE +F ++ +N G YVL+ N+YA +W+E
Sbjct: 505 KMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKE 564
Query: 680 VKKLREKISRRGLKKNPGCSWIEIKGKVNIFVAGGSSHPHAKKIESLLKRLRLEMKREGY 739
+ KLR ++ ++GL+K P CSWIE+K K + FV+G SHP KI LK + +M++EGY
Sbjct: 565 MAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGY 624
Query: 740 FPKTRYALINADEMEKEVALCGHSEKLAMAFGILNLPAGQTIRVTKNLRVCGDCHEMAKF 799
T L + DE K L GHSE+LA+AFGI+N G TIRVTKN+R+C DCH KF
Sbjct: 625 VADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKF 684
Query: 800 MSKTARREIVLRDSNRFHHFKDGRCSCRGFW 830
+SK REI++RD++RFHHF G CSC +W
Sbjct: 685 ISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 508 bits (1309), Expect = e-143, Method: Compositional matrix adjust.
Identities = 238/570 (41%), Positives = 361/570 (63%), Gaps = 12/570 (2%)
Query: 272 TVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGER 331
T+L C L+ GR VHA L++ F +I NTLL+MY+KCG L+ A +VFEKM +R
Sbjct: 65 TLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQR 124
Query: 332 SVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVH 391
V+WT++I+GY++ A+ F M+R G P+ + ++S++ A A + G +H
Sbjct: 125 DFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCCGHQLH 184
Query: 392 DYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIG--------- 442
+ + S+++V +AL+D+Y + G M DA+ VF+ + ++ VSWN +I
Sbjct: 185 GFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTE 244
Query: 443 -ALDLFVAMLQN-FEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIV 500
AL+LF ML++ F P + A + AC+S LE+G+ +H Y+++ G N ++
Sbjct: 245 KALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLL 304
Query: 501 DMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV 560
DMY K G + AR +FD + +D++SW ++ Y HGFG +A+ F +MR+ GI P+E+
Sbjct: 305 DMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEI 364
Query: 561 SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEM 620
SF+SVL ACSHSGL+DEGW ++ +M+ + I P+ HY +VDLL R G+L+ A RFIE
Sbjct: 365 SFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRALRFIEE 423
Query: 621 MPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEV 680
MP+ P A IW +LL CR+H +L AEHVFEL+PD+ G +V+L N+YA +W +
Sbjct: 424 MPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGGRWNDA 483
Query: 681 KKLREKISRRGLKKNPGCSWIEIKGKVNIFVAGGSSHPHAKKIESLLKRLRLEMKREGYF 740
++R+K+ G+KK P CSW+EI+ +++FVA HP ++I + + ++K GY
Sbjct: 484 ARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIKELGYV 543
Query: 741 PKTRYALINADEMEKEVALCGHSEKLAMAFGILNLPAGQTIRVTKNLRVCGDCHEMAKFM 800
P T + +++ D+ E+EV L HSEK+A+AF +LN P G TI + KN+RVCGDCH K
Sbjct: 544 PDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVCGDCHTAIKLA 603
Query: 801 SKTARREIVLRDSNRFHHFKDGRCSCRGFW 830
SK REI++RD+NRFHHFKDG CSC+ +W
Sbjct: 604 SKVVGREIIVRDTNRFHHFKDGNCSCKDYW 633
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 830 | ||||||
| 359483532 | 824 | PREDICTED: pentatricopeptide repeat-cont | 0.971 | 0.978 | 0.679 | 0.0 | |
| 188509964 | 805 | putative pentatricopeptide repeat protei | 0.957 | 0.987 | 0.659 | 0.0 | |
| 449465002 | 926 | PREDICTED: pentatricopeptide repeat-cont | 0.936 | 0.839 | 0.648 | 0.0 | |
| 188509980 | 805 | putative pentatricopeptide [Gossypium ar | 0.957 | 0.987 | 0.659 | 0.0 | |
| 49333376 | 805 | putative pentatricopeptide repeat protei | 0.957 | 0.987 | 0.656 | 0.0 | |
| 49333391 | 805 | putative pentatricopeptide repeat protei | 0.957 | 0.987 | 0.659 | 0.0 | |
| 356557757 | 1227 | PREDICTED: pentatricopeptide repeat-cont | 0.996 | 0.674 | 0.621 | 0.0 | |
| 357475445 | 1183 | Pentatricopeptide repeat-containing prot | 0.940 | 0.660 | 0.617 | 0.0 | |
| 357519003 | 908 | Pentatricopeptide repeat-containing prot | 0.940 | 0.860 | 0.616 | 0.0 | |
| 297804280 | 871 | pentatricopeptide repeat-containing prot | 0.942 | 0.897 | 0.621 | 0.0 |
| >gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1202 bits (3110), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 574/845 (67%), Positives = 690/845 (81%), Gaps = 39/845 (4%)
Query: 3 IFMAKITTNFLFFSPPNQ-------SYGKKFASYKPSTLPIIVSSKSHSSCTINPISASI 55
+ ++K T N L+ SPP+Q +Y F ++PS+ +VSS + SC S
Sbjct: 2 LLISKTTPN-LWVSPPHQIHRENSLTYPNGFIFFRPSSKTPLVSSNLYHSCATIGTSVLP 60
Query: 56 SKTLVCKTKNYNAEIGRFCEVGNLEKAMEVLYSSEKSKIDTKTYCSILQLCADLKSLEDG 115
S+T+ CK +YN EI RFCE+GNL +AME++ S K ++ +TYCS+LQLCADLKS++DG
Sbjct: 61 SETIDCKITDYNIEICRFCELGNLRRAMELINQSPKPDLELRTYCSVLQLCADLKSIQDG 120
Query: 116 KKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNKIDNGKVFIWNLLMHEYSK 175
+++HSII +S V DGVLGSKLVFM+VTCGDL+EGRR+F+K+ N KVF+WNLLM+ Y+K
Sbjct: 121 RRIHSII-QSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAK 179
Query: 176 TGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRRVKDAHKLFDELSDRDVVSW 235
GNF+ESL LFK+M+ LGI RRV+ A KLFDEL DRDV+SW
Sbjct: 180 IGNFRESLSLFKRMRELGI--------------------RRVESARKLFDELGDRDVISW 219
Query: 236 NCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALK 295
N MISGY++NG++EKGL++F++ML LG N DLATMV+V++GC+N G L+ GRA+H +A+K
Sbjct: 220 NSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIK 279
Query: 296 ACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRL 355
A F KE++ NN LLDMYSK G+L+ AI+VFE MGERSVVSWTSMIAGYAREG+ D ++RL
Sbjct: 280 ASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRL 339
Query: 356 FRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAK 415
F M +EGI PD++ IT+ILHACAC GLLE GKDVH+YIKEN MQS L+VSNALMDMYAK
Sbjct: 340 FHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAK 399
Query: 416 CGSMADAESVFNQMPVKDIVSWNTMIG----------ALDLFVAMLQNFEPDGVTMACIL 465
CGSM DA SVF++M VKDIVSWNTMIG AL+LFV M N +P+ +TMACIL
Sbjct: 400 CGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNSKPNSITMACIL 459
Query: 466 PACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLI 525
PACASLAALERG+EIHG+ILR+G S DR+VANA+VDMY+KCG L LAR LFDMIP KDL+
Sbjct: 460 PACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLV 519
Query: 526 SWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMM 585
SWT+MIAGYGMHG+G +AIA FN+MR +GIEPDEVSFIS+LYACSHSGL+DEGW FFNMM
Sbjct: 520 SWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMM 579
Query: 586 RYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKL 645
R C IEPK EHYAC+VDLL+R GNLS+AY+FI+MMP+ PDATIWG+LLCGCRI+H+VKL
Sbjct: 580 RNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKL 639
Query: 646 AEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIEIKG 705
AEKVAEHVFELEP+NTGYYVLLAN+YAEAEKWEEVKKLRE+I RRGL+KNPGCSWIEIKG
Sbjct: 640 AEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKG 699
Query: 706 KVNIFVAGGSSHPHAKKIESLLKRLRLEMKREGYFPKTRYALINADEMEKEVALCGHSEK 765
KV+IFV G SSHP A KIE LLK+ R MK EG+FPK RYALI AD+ EKE+ALCGHSEK
Sbjct: 700 KVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHFPKMRYALIKADDTEKEMALCGHSEK 759
Query: 766 LAMAFGILNLPAGQTIRVTKNLRVCGDCHEMAKFMSKTARREIVLRDSNRFHHFKDGRCS 825
+AMAFGIL+LP G+T+RVTKNLRVCGDCHEMAKFMSK +R+I+LRDSNRFHHFKDG CS
Sbjct: 760 IAMAFGILSLPPGKTVRVTKNLRVCGDCHEMAKFMSKMVKRDIILRDSNRFHHFKDGSCS 819
Query: 826 CRGFW 830
CRG W
Sbjct: 820 CRGHW 824
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii] | Back alignment and taxonomy information |
|---|
Score = 1134 bits (2934), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 551/836 (65%), Positives = 676/836 (80%), Gaps = 41/836 (4%)
Query: 5 MAKITTNFLFFSPP--NQSYGKKFAS-------YKPSTLPIIVSSKSHSSCTINPISASI 55
MAK N L FSP NQ+ + F S +KP++ S SSC ISA+
Sbjct: 1 MAKAAPN-LCFSPLTLNQNRKENFFSSQNGCFIHKPTSKATFFSP-IFSSCLPIRISATP 58
Query: 56 SKTLVCKTKNYNAEIGRFCEVGNLEKAMEVLYSSEKSKIDTKTYCSILQLCADLKSLEDG 115
++T+ + +YNA+I FC++GNLE AME++ +KS+++TKTY S+LQLCA KSL DG
Sbjct: 59 TRTIDRQVTDYNAKILHFCQLGNLENAMELVCMCQKSELETKTYSSVLQLCAGSKSLTDG 118
Query: 116 KKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNKIDNGKVFIWNLLMHEYSK 175
KKVHSII + + +D+ VLG KLV ++ TCGDLKEGRRVF+ ++ V++WN ++ EY+K
Sbjct: 119 KKVHSIIKSNNVAVDE-VLGLKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAK 177
Query: 176 TGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRRVKDAHKLFDELSDRDVVSW 235
G+FKES+ LFK M GI +R + A +LFD+L DRDV+SW
Sbjct: 178 IGDFKESICLFKIMVEKGIEG------------------KRPESASELFDKLCDRDVISW 219
Query: 236 NCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALK 295
N MISGY++NG+ E+GLE++K+M+ LG +VDLAT+++VL GCAN G L G+AVH+ A+K
Sbjct: 220 NSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIK 279
Query: 296 ACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRL 355
+ F + I+F+NTLLDMYSKCGDLDGA+RVFEKMGER+VVSWTSMIAGY R+G DGAIRL
Sbjct: 280 STFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRL 339
Query: 356 FRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAK 415
+ M +EG++ DV A TSILHACA G L+ GKDVHDYIK N+M+S+L+V NALMDMY K
Sbjct: 340 LQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYTK 399
Query: 416 CGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALE 475
CGSM A SVF+ M VKDI+SWNTMIG L +PD TMACILPACASL+ALE
Sbjct: 400 CGSMDGANSVFSTMVVKDIISWNTMIGEL----------KPDSRTMACILPACASLSALE 449
Query: 476 RGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYG 535
RG+EIHGYILR+G S+DR+VANA+VD+YVKCGVL LAR LFDMIP+KDL+SWT+MI+GYG
Sbjct: 450 RGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMISGYG 509
Query: 536 MHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKL 595
MHG+G +AIATFN+MR AGIEPDEVSFIS+LYACSHSGL+++GWRFF +M+ + NIEPKL
Sbjct: 510 MHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKL 569
Query: 596 EHYACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFE 655
EHYACMVDLLSRTGNLS+AY FIE +P+APDATIWG+LLCGCRI+H+++LAEKVAE VFE
Sbjct: 570 EHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFE 629
Query: 656 LEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIEIKGKVNIFVAG-G 714
LEP+NTGYYVLLAN+YAEAEKWEEVK++REKI ++GL+KNPGCSWIEIKGKVN+FV+G
Sbjct: 630 LEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGKVNLFVSGNN 689
Query: 715 SSHPHAKKIESLLKRLRLEMKREGYFPKTRYALINADEMEKEVALCGHSEKLAMAFGILN 774
SSHPH+KKIESLLK++R +MK EGYFPKT+YALINADEM+KE+ALCGHSEKLAMAFG+L
Sbjct: 690 SSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLA 749
Query: 775 LPAGQTIRVTKNLRVCGDCHEMAKFMSKTARREIVLRDSNRFHHFKDGRCSCRGFW 830
LP +T+RVTKNLRVCGDCHEMAKFMSK RREIVLRDSNRFHHFK+G CSCRGFW
Sbjct: 750 LPPRKTVRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKNGYCSCRGFW 805
|
Source: Gossypioides kirkii Species: Gossypioides kirkii Genus: Gossypioides Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750, chloroplastic-like [Cucumis sativus] gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1127 bits (2915), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 537/828 (64%), Positives = 652/828 (78%), Gaps = 51/828 (6%)
Query: 53 ASISKTLVCKTKNY-------NAEIGRFCEVGNLEKAMEVLYSSEKSKIDTKTYCSILQL 105
+S++ +TK+Y + +I FCEVG+L+ AME+L SS+ S D YCSILQL
Sbjct: 100 SSLAYAPALETKSYMDVELDSSRKIVEFCEVGDLKNAMELLCSSQNSNFDLGAYCSILQL 159
Query: 106 CADLKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNKIDNGKVFI 165
CA+ KS+ DG++V SII SG++ID G+LG KLVFM+V CGDLKEGR VF+K+ K+F+
Sbjct: 160 CAERKSIRDGRRVRSIIESSGVMID-GILGVKLVFMYVKCGDLKEGRMVFDKLSESKIFL 218
Query: 166 WNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGN------------ 213
WNL++ EYS +GN+ ES+ LFK+M LGI +SYTFS +LKC A V
Sbjct: 219 WNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGRQVHGLIC 278
Query: 214 --------------------SRRVKDAHKLFDELSDRDVVSWNCMISGYIANGVAEKGLE 253
R+V+ A KLFDEL+DRDV+SWN MISGY+ NG+ ++G+E
Sbjct: 279 KLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIE 338
Query: 254 VFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKAC-FSKEISFNNTLLDMY 312
+F +ML G ++DLATMV V CAN G L+ G+ +H++++KA +E+ FNNTLLDMY
Sbjct: 339 IFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMY 398
Query: 313 SKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAIT 372
SKCGDL+ AIRVFE+M E++VVSWTSMI GY REG+ DGAI+LF M G+ PDVYA+T
Sbjct: 399 SKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVT 458
Query: 373 SILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVK 432
SIL+ACA +G L+ GK VHDYI+EN+++++ +VSNAL DMYAKCGSM DA VF+ M K
Sbjct: 459 SILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKK 518
Query: 433 DIVSWNTMIG----------ALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHG 482
D++SWNTMIG AL LF M + +PDG T+ACILPACASLAAL++GREIHG
Sbjct: 519 DVISWNTMIGGYTKNSLPNEALTLFAEMQRESKPDGTTVACILPACASLAALDKGREIHG 578
Query: 483 YILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCD 542
Y LR+G S D+ V NA+VDMYVKCG+LVLARSLFDMIP KDL+SWT+MIAGYGMHG+G +
Sbjct: 579 YALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSE 638
Query: 543 AIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMV 602
AI TFN MR GIEPDEVSFIS+LYACSHSGL+DEGW+ FN+M+ EC IEP LEHYACMV
Sbjct: 639 AINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYACMV 698
Query: 603 DLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTG 662
DLL+RTGNL +A++FI+ MP+ PDATIWG+LLCGCRIHH+VKLAEKVAE +FELEP+NTG
Sbjct: 699 DLLARTGNLVKAHKFIKAMPIKPDATIWGALLCGCRIHHDVKLAEKVAERIFELEPENTG 758
Query: 663 YYVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIEIKGKVNIFVAGGSSHPHAKK 722
YYVLLAN+YAEAEKWEEV+KLR+KI +RGLKKNPGCSWIEIKGK+NIFVAG S P AKK
Sbjct: 759 YYVLLANIYAEAEKWEEVQKLRKKIGQRGLKKNPGCSWIEIKGKINIFVAGDCSKPQAKK 818
Query: 723 IESLLKRLRLEMKREGYFPKTRYALINADEMEKEVALCGHSEKLAMAFGILNLPAGQTIR 782
IE LLKRLR +MK EGY PKT YAL+NADE EKEVALCGHSEKLAMAFG+LNLP G+TIR
Sbjct: 819 IELLLKRLRSKMKEEGYSPKTAYALLNADEREKEVALCGHSEKLAMAFGMLNLPPGKTIR 878
Query: 783 VTKNLRVCGDCHEMAKFMSKTARREIVLRDSNRFHHFKDGRCSCRGFW 830
VTKNLRVCGDCHEMAKFMSK+A REI+LRDS+RFHHFKDG CSCRG+W
Sbjct: 879 VTKNLRVCGDCHEMAKFMSKSASREIILRDSSRFHHFKDGSCSCRGYW 926
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum] | Back alignment and taxonomy information |
|---|
Score = 1127 bits (2914), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 551/836 (65%), Positives = 674/836 (80%), Gaps = 41/836 (4%)
Query: 5 MAKITTNFLFFSPP--NQSYGKKFAS-------YKPSTLPIIVSSKSHSSCTINPISASI 55
MAK N L FSP NQ+ + F S +KPS L + S SSC ISA+
Sbjct: 1 MAKAAPN-LCFSPLTLNQNRKENFFSSQNGCFIHKPS-LKTKIFSPIFSSCIPIRISATP 58
Query: 56 SKTLVCKTKNYNAEIGRFCEVGNLEKAMEVLYSSEKSKIDTKTYCSILQLCADLKSLEDG 115
++T+ + +YNA+I FC++G+LE AME++ +KS+++TKTY S+LQLCA LKS DG
Sbjct: 59 TRTIDHQVTDYNAKILHFCQLGDLENAMELICMCQKSELETKTYGSVLQLCAGLKSFTDG 118
Query: 116 KKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNKIDNGKVFIWNLLMHEYSK 175
KKVHSII + + +D G LG KLV + TCGDLKEGRRVF+ ++ V++WN ++ EY+K
Sbjct: 119 KKVHSIIKSNSVGVD-GALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAK 177
Query: 176 TGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRRVKDAHKLFDELSDRDVVSW 235
G+FKES+ LFK M GI +R + A +LFD+L DRDV+SW
Sbjct: 178 IGDFKESICLFKIMVEKGIEG------------------KRPESAFELFDKLCDRDVISW 219
Query: 236 NCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALK 295
N MISGY++NG+ E+GL ++K+M+ LG +VDLAT+++VL GCAN G L G+AVH+ A+K
Sbjct: 220 NSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIK 279
Query: 296 ACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRL 355
+ F + I+F+NTLLDMYSKCGDLDGA+RVFEKMGER+VVSWTSMIAGY R+G DGAI+L
Sbjct: 280 SSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKL 339
Query: 356 FRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAK 415
+ M +EG++ DV AITSILHACA G L+ GKDVHDYIK N+M+S+L+V NALMDMYAK
Sbjct: 340 LQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAK 399
Query: 416 CGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALE 475
CGSM A SVF+ M VKDI+SWNTMIG L +PD TMAC+LPACASL+ALE
Sbjct: 400 CGSMEAANSVFSTMVVKDIISWNTMIGEL----------KPDSRTMACVLPACASLSALE 449
Query: 476 RGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYG 535
RG+EIHGYILR+G S+DR+VANA+VD+YVKCGVL LAR LFDMIP+KDL+SWT+MIAGYG
Sbjct: 450 RGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYG 509
Query: 536 MHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKL 595
MHG+G +AIATFN+MR AGIEPDEVSFIS+LYACSHSGL+++GWRFF +M+ + NIEPKL
Sbjct: 510 MHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKL 569
Query: 596 EHYACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFE 655
EHYACMVDLLSRTGNLS+AY F+E +P+APDATIWG+LLCGCR +H+++LAEKVAE VFE
Sbjct: 570 EHYACMVDLLSRTGNLSKAYEFMETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFE 629
Query: 656 LEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIEIKGKVNIFVAG-G 714
LEP+NTGYYVLLAN+YAEAEKWEEVK+LREKI ++GL+KNPGCSWIEIKGKVN+FV+G
Sbjct: 630 LEPENTGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGKVNLFVSGNN 689
Query: 715 SSHPHAKKIESLLKRLRLEMKREGYFPKTRYALINADEMEKEVALCGHSEKLAMAFGILN 774
SSHPH+K IESLLK++R +MK EG+FPKT+YALINADEM+KE+ALCGHSEKLAMAFG+L
Sbjct: 690 SSHPHSKNIESLLKKMRRKMKEEGHFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLT 749
Query: 775 LPAGQTIRVTKNLRVCGDCHEMAKFMSKTARREIVLRDSNRFHHFKDGRCSCRGFW 830
LP +TIRVTKNLRVCGDCHEMAKFMSK RREIVLRDSNRFHHFKDG CSCRGFW
Sbjct: 750 LPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKDGYCSCRGFW 805
|
Source: Gossypium arboreum Species: Gossypium arboreum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 1123 bits (2905), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 549/836 (65%), Positives = 673/836 (80%), Gaps = 41/836 (4%)
Query: 5 MAKITTNFLFFSPP--NQSYGKKFAS-------YKPSTLPIIVSSKSHSSCTINPISASI 55
MAK N L FSP NQ+ + F S +KPS L + S SSC ISA+
Sbjct: 1 MAKAAPN-LCFSPLTLNQNRKENFFSSQNGCFIHKPS-LKTKIFSPIFSSCIPIRISATP 58
Query: 56 SKTLVCKTKNYNAEIGRFCEVGNLEKAMEVLYSSEKSKIDTKTYCSILQLCADLKSLEDG 115
++T+ + +YNA+I FC++G+LE AME++ +KS+++TKTY S+LQLCA LKS DG
Sbjct: 59 TRTIDHQVTDYNAKILHFCQLGDLENAMELICMCKKSELETKTYSSVLQLCAGLKSFTDG 118
Query: 116 KKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNKIDNGKVFIWNLLMHEYSK 175
KKVHSII + + +D+ LG KLV + TCGDLKEGRRVF+ ++ V++WN ++ EY+K
Sbjct: 119 KKVHSIIKSNSVGVDEA-LGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAK 177
Query: 176 TGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRRVKDAHKLFDELSDRDVVSW 235
G+FKES+ LFK M GI +R + A +LFD+L DRDV+SW
Sbjct: 178 IGDFKESICLFKIMVEKGIEG------------------KRPESAFELFDKLCDRDVISW 219
Query: 236 NCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALK 295
N MISGY++NG+ E+GL ++K+M+ LG +VDLAT+++VL GCAN G L G+AVH+ A+K
Sbjct: 220 NSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIK 279
Query: 296 ACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRL 355
+ F + I+F+NTLLDMYSKCGDLDGA+RVFEKMGER+VVSWTSMIAGY R+G DGAI+L
Sbjct: 280 SSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKL 339
Query: 356 FRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAK 415
+ M +EG++ DV AITSILHACA G L+ GKDVHDYIK N+M+S+L+V NALMDMYAK
Sbjct: 340 LQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAK 399
Query: 416 CGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALE 475
CGSM A SVF+ M VKDI+SWNTMIG L +PD TMAC+LPACASL+ALE
Sbjct: 400 CGSMEAANSVFSTMVVKDIISWNTMIGEL----------KPDSRTMACVLPACASLSALE 449
Query: 476 RGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYG 535
RG+EIHGYILR+G S+DR+VANA+VD+YVKCGVL LAR LFDMIP+KDL+SWT+MIAGYG
Sbjct: 450 RGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYG 509
Query: 536 MHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKL 595
MHG+G +AIATFN+MR AGIEPDEVSFIS+LYACSHSGL+++GWRFF +M+ + NIEPKL
Sbjct: 510 MHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKL 569
Query: 596 EHYACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFE 655
EHYACMVDLLSRTGNLS+AY FIE +P+APDATIWG+LLCGCR +H+++LAEKVAE VFE
Sbjct: 570 EHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFE 629
Query: 656 LEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIEIKGKVNIFVAG-G 714
LEP+N+GYYVLLAN+YAEAEKWEEVK+LREKI ++GL+KNPGCSWIEIKGKVN+FV+G
Sbjct: 630 LEPENSGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGKVNLFVSGNN 689
Query: 715 SSHPHAKKIESLLKRLRLEMKREGYFPKTRYALINADEMEKEVALCGHSEKLAMAFGILN 774
SSHPH+K IESLLK++R +MK EG+FPKT+YALINADEM+KE+ALCGHSEKLAMAFG+L
Sbjct: 690 SSHPHSKNIESLLKKMRRKMKEEGHFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLT 749
Query: 775 LPAGQTIRVTKNLRVCGDCHEMAKFMSKTARREIVLRDSNRFHHFKDGRCSCRGFW 830
LP +TIRVTKNLRVCGDCHEMAKFMSK RREIVLRD NRFHHFKDG CSCRGFW
Sbjct: 750 LPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDPNRFHHFKDGYCSCRGFW 805
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 1123 bits (2904), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 551/836 (65%), Positives = 673/836 (80%), Gaps = 41/836 (4%)
Query: 5 MAKITTNFLFFSPP--NQSYGKKFAS-------YKPSTLPIIVSSKSHSSCTINPISASI 55
MAK N L FSP NQ+ + F S +KPS L S SC ISA+
Sbjct: 1 MAKAAPN-LCFSPLTLNQNRKENFFSSQNGCFIHKPS-LKTTFFSPIFRSCIPVRISATP 58
Query: 56 SKTLVCKTKNYNAEIGRFCEVGNLEKAMEVLYSSEKSKIDTKTYCSILQLCADLKSLEDG 115
++T+ + +YNA+I FC++G+LE AME++ +KS+++TKTY S+LQLCA LKSL DG
Sbjct: 59 TRTIDHQVTDYNAKILHFCQLGDLENAMELVCMCQKSELETKTYGSVLQLCAGLKSLTDG 118
Query: 116 KKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNKIDNGKVFIWNLLMHEYSK 175
KKVHSII + + +D+ LG KLV + TCGDLKEGRRVF+ ++ V++WN ++ EY+K
Sbjct: 119 KKVHSIIKSNSVGVDEA-LGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAK 177
Query: 176 TGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRRVKDAHKLFDELSDRDVVSW 235
G+FKES+ LFK M GI +R + A +LFD+L DRDV+SW
Sbjct: 178 IGDFKESICLFKIMVEKGIEG------------------KRPESASELFDKLCDRDVISW 219
Query: 236 NCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALK 295
N MISGY++NG+ E+GL ++K+M+ LG +VDLAT+++VL GCAN G L G+AVH+ A+K
Sbjct: 220 NSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIK 279
Query: 296 ACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRL 355
+ F + I+F+NTLLDMYSKCGDLDGA+RVFEKMGER+VVSWTSMIAGY R+G DGAI L
Sbjct: 280 SSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIIL 339
Query: 356 FRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAK 415
+ M +EG++ DV AITSILHACA G L+ GKDVHDYIK N+M S+L+V NALMDMYAK
Sbjct: 340 LQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAK 399
Query: 416 CGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALE 475
CGSM A SVF+ M VKDI+SWNTM+G L +PD TMACILPACASL+ALE
Sbjct: 400 CGSMEGANSVFSTMVVKDIISWNTMVGEL----------KPDSRTMACILPACASLSALE 449
Query: 476 RGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYG 535
RG+EIHGYILR+G S+DR+VANA+VD+YVKCGVL LAR LFDMIP+KDL+SWT+MIAGYG
Sbjct: 450 RGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYG 509
Query: 536 MHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKL 595
MHG+G +AIATFN+MR AGIEPDEVSFIS+LYACSHSGL+++GWRFF +M+ + NIEPKL
Sbjct: 510 MHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKL 569
Query: 596 EHYACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFE 655
EHYACMVDLLSRTGNLS+AY+FIE +P+APDATIWG+LLCGCRI+H+++LAEKVAE VFE
Sbjct: 570 EHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFE 629
Query: 656 LEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIEIKGKVNIFVAG-G 714
LEP+NTGYYVLLAN+YAEAEK EEVK++REKI ++GL+KNPGCSWIEIKG+VN+FV+G
Sbjct: 630 LEPENTGYYVLLANIYAEAEKREEVKRMREKIGKKGLRKNPGCSWIEIKGRVNLFVSGNN 689
Query: 715 SSHPHAKKIESLLKRLRLEMKREGYFPKTRYALINADEMEKEVALCGHSEKLAMAFGILN 774
SSHPH+KKIESLLK++R +MK EGYFPKT+YALINADEM+KE+ALCGHSEKLAMAFG+L
Sbjct: 690 SSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALINADEMQKEMALCGHSEKLAMAFGLLT 749
Query: 775 LPAGQTIRVTKNLRVCGDCHEMAKFMSKTARREIVLRDSNRFHHFKDGRCSCRGFW 830
LP +TIRVTKNLRVCGDCHEMAKFMSK RREIVLRDSNRFHHFKDG CSCRGFW
Sbjct: 750 LPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKDGYCSCRGFW 805
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1098 bits (2841), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 544/876 (62%), Positives = 658/876 (75%), Gaps = 49/876 (5%)
Query: 1 MQIFMAKITTNFLFFSPPNQSYGKKFASY-KPSTLPIIVSSKSHSSCTINPISASISKTL 59
M + MAK TNF +S N + A+Y KP I S + + S T
Sbjct: 355 MLLTMAKSITNFGTYSTCNCHTSE--ANYAKPRNCFIFFQQPSRKYFLSSYLDVPRSSTR 412
Query: 60 VCKTK--NYNAEIGRFCEVGNLEKAMEVLYSSEKSKIDTKTYCSILQLCADLKSLEDGKK 117
V + N +I +FCEVG+L A+E+L S+KS++D Y SILQLCA+ K L++GK
Sbjct: 413 VGAFAKLDENTKICKFCEVGDLRNAVELLRMSQKSELDLNAYSSILQLCAEHKCLQEGKM 472
Query: 118 VHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNKI-DNGKVFIWNLLMHEYSKT 176
VHS+I +GI I+ GVLG+KLVFM+V+CG L+EGRR+F+ I + KVF+WNL+M EY+K
Sbjct: 473 VHSVISSNGIPIE-GVLGAKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKI 531
Query: 177 GNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVG------------------------ 212
G+++ES+YLFKKMQ LGI +SYTFSC+LKC A +G
Sbjct: 532 GDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVV 591
Query: 213 --------NSRRVKDAHKLFDELSDRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFN 264
S V AHKLFDEL DRDVVSWN MISG + NG + LE F +ML L
Sbjct: 592 NSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVG 651
Query: 265 VDLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRV 324
VDLAT+V ++ CAN G+L GRA+H +KACFS+E+ FNNTLLDMYSKCG+L+ AI+
Sbjct: 652 VDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQA 711
Query: 325 FEKMGERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLL 384
FEKMG+++VVSWTS+IA Y REG++D AIRLF M +G+ PDVY++TS+LHACAC L
Sbjct: 712 FEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSL 771
Query: 385 EIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIG-- 442
+ G+DVH+YI++N+M L VSNALMDMYAKCGSM +A VF+Q+PVKDIVSWNTMIG
Sbjct: 772 DKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGY 831
Query: 443 --------ALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRN 494
AL LF M + PDG+TMAC+LPAC SLAALE GR IHG ILR+G S++ +
Sbjct: 832 SKNSLPNEALKLFAEMQKESRPDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSELH 891
Query: 495 VANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAG 554
VANA++DMYVKCG LV AR LFDMIP KDLI+WT+MI+G GMHG G +AIATF MR AG
Sbjct: 892 VANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAG 951
Query: 555 IEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEA 614
I+PDE++F S+LYACSHSGL++EGW FFN M ECN+EPKLEHYACMVDLL+RTGNLS+A
Sbjct: 952 IKPDEITFTSILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKA 1011
Query: 615 YRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEA 674
Y IE MP+ PDATIWG+LLCGCRIHH+V+LAEKVAEHVFELEPDN GYYVLLAN+YAEA
Sbjct: 1012 YNLIETMPIKPDATIWGALLCGCRIHHDVELAEKVAEHVFELEPDNAGYYVLLANIYAEA 1071
Query: 675 EKWEEVKKLREKISRRGLKKNPGCSWIEIKGKVNIFVAGGSSHPHAKKIESLLKRLRLEM 734
EKWEEVKKLRE+I +RGLKK+PGCSWIE++GK FV+ ++HP AK I SLL LR++M
Sbjct: 1072 EKWEEVKKLRERIGKRGLKKSPGCSWIEVQGKFTTFVSADTAHPQAKSIFSLLNNLRIKM 1131
Query: 735 KREGYFPKTRYALINADEMEKEVALCGHSEKLAMAFGILNLPAGQTIRVTKNLRVCGDCH 794
K EG+ PK RYALINA +MEKEVALCGHSEKLAMAFGILNLP+G+TIRV KNLRVC DCH
Sbjct: 1132 KNEGHSPKMRYALINAGDMEKEVALCGHSEKLAMAFGILNLPSGRTIRVAKNLRVCDDCH 1191
Query: 795 EMAKFMSKTARREIVLRDSNRFHHFKDGRCSCRGFW 830
EMAKFMSKT RREI+LRDSNRFHHFKDG CSCR FW
Sbjct: 1192 EMAKFMSKTTRREIILRDSNRFHHFKDGFCSCRDFW 1227
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1075 bits (2779), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 511/827 (61%), Positives = 636/827 (76%), Gaps = 46/827 (5%)
Query: 43 HSSCTINPISASISKTLVCKTKNYNAEIGRFCEVGNLEKAMEVLYSSEKSKIDTKTYCSI 102
HS+ ++P S + T T+N NA+I +FCE+G+L A+E+L S+ ++ +YCS+
Sbjct: 319 HSTVCVSP---SFTNTTHSVTQNQNAKINKFCEMGDLRNAIELLTKSKSYELGLNSYCSV 375
Query: 103 LQLCADLKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNKIDNGK 162
LQLCA+ KSLEDGK+VHS+I +GI ID+ LG+KLVFM+V CGDL +GR++F+KI N K
Sbjct: 376 LQLCAEKKSLEDGKRVHSVIISNGISIDEA-LGAKLVFMYVNCGDLVQGRKIFDKIMNDK 434
Query: 163 VFIWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRR------ 216
VF+WNLLM EY+K GNF+ES+ LFKKMQ LG+ + YTF+CVLKC A +G +
Sbjct: 435 VFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHG 494
Query: 217 --------------------------VKDAHKLFDELSDRDVVSWNCMISGYIANGVAEK 250
V+ AH LFDELS+ DVVSWN MI+G + NG +
Sbjct: 495 YVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGN 554
Query: 251 GLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLD 310
GLE+F +ML LG VDL T+V+VL AN G L GRA+H F +KACFS+E+ F+NTLLD
Sbjct: 555 GLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLD 614
Query: 311 MYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYA 370
MYSKCG+L+GA VF KMG+ ++VSWTS IA Y REG++ AI LF M +G+ PD+Y
Sbjct: 615 MYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYT 674
Query: 371 ITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMP 430
+TSI+HACAC L+ G+DVH Y+ +N M S+L V+NAL++MYAKCGS+ +A VF+++P
Sbjct: 675 VTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIP 734
Query: 431 VKDIVSWNTMIG----------ALDLFVAMLQNFEPDGVTMACILPACASLAALERGREI 480
VKDIVSWNTMIG AL+LF+ M + F+PD +TMAC+LPACA LAAL++GREI
Sbjct: 735 VKDIVSWNTMIGGYSQNSLPNEALELFLDMQKQFKPDDITMACVLPACAGLAALDKGREI 794
Query: 481 HGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFG 540
HG+ILR G +D +VA A+VDMY KCG+LVLA+ LFDMIP KDLISWT+MIAGYGMHGFG
Sbjct: 795 HGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFG 854
Query: 541 CDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYAC 600
+AI+TFN+MR AGIEPDE SF +L ACSHSGL++EGW+FFN MR EC +EPKLEHYAC
Sbjct: 855 NEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYAC 914
Query: 601 MVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDN 660
+VDLL+R GNLS+AY+FIE MP+ PD TIWG LL GCRIHH+VKLAEKVAEH+FELEPDN
Sbjct: 915 VVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDN 974
Query: 661 TGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIEIKGKVNIFVAGGSSHPHA 720
T YYV+LANVYAEAEKWEEVKKLR+++ +RG K+NPGCSWIE+ GK NIFVAG S HP A
Sbjct: 975 TRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGNSKHPQA 1034
Query: 721 KKIESLLKRLRLEMKREGYFPKTRYALINADEMEKEVALCGHSEKLAMAFGILNLPAGQT 780
K+I+ LL++L ++M+ E YF RY LIN D+MEKE+ CGHSEK AMAFGILNLP G+T
Sbjct: 1035 KRIDVLLRKLTMQMQNEDYFSMFRYVLINEDDMEKEMIQCGHSEKSAMAFGILNLPPGRT 1094
Query: 781 IRVTKNLRVCGDCHEMAKFMSKTARREIVLRDSNRFHHFKDGRCSCR 827
+RV+KN RVCGDCHEM KFMSKT +REIVLRDSNRFHHFKDG CSCR
Sbjct: 1095 VRVSKNQRVCGDCHEMGKFMSKTTKREIVLRDSNRFHHFKDGLCSCR 1141
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1074 bits (2777), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 510/827 (61%), Positives = 636/827 (76%), Gaps = 46/827 (5%)
Query: 43 HSSCTINPISASISKTLVCKTKNYNAEIGRFCEVGNLEKAMEVLYSSEKSKIDTKTYCSI 102
HS+ ++P S + T T+N NA+I +FCE+G+L A+E+L S+ ++ +YCS+
Sbjct: 44 HSTVCVSP---SFTNTTHSVTQNQNAKINKFCEMGDLRNAIELLTKSKSYELGLNSYCSV 100
Query: 103 LQLCADLKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNKIDNGK 162
LQLCA+ KSLEDGK+VHS+I +GI +D+ LG+KLVFM+V CGDL +GR++F+KI N K
Sbjct: 101 LQLCAEKKSLEDGKRVHSVIISNGISVDEA-LGAKLVFMYVNCGDLVQGRKIFDKIMNDK 159
Query: 163 VFIWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRR------ 216
VF+WNLLM EY+K GNF+ES+ LFKKMQ LG+ + YTF+CVLKC A +G +
Sbjct: 160 VFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHG 219
Query: 217 --------------------------VKDAHKLFDELSDRDVVSWNCMISGYIANGVAEK 250
V+ AH LFDELS+ DVVSWN MI+G + NG +
Sbjct: 220 YVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGN 279
Query: 251 GLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLD 310
GLE+F +ML LG VDL T+V+VL CAN G L GRA+H F +KACFS+E+ F+NTLLD
Sbjct: 280 GLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLD 339
Query: 311 MYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYA 370
MYSKCG+L+GA VF KMG+ ++VSWTS+IA Y REG++ AI LF M +G+ PD+Y
Sbjct: 340 MYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYT 399
Query: 371 ITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMP 430
+TSI+HACAC L+ G+DVH Y+ +N M S+L V+NAL++MYAKCGS+ +A VF+++P
Sbjct: 400 VTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIP 459
Query: 431 VKDIVSWNTMIG----------ALDLFVAMLQNFEPDGVTMACILPACASLAALERGREI 480
VKDIVSWNTMIG AL+LF+ M + F+PD +TMAC+LPACA LAAL++GREI
Sbjct: 460 VKDIVSWNTMIGGYSQNLLPNEALELFLDMQKQFKPDDITMACVLPACAGLAALDKGREI 519
Query: 481 HGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFG 540
HG+ILR G +D +VA A+VDMY KCG+LVLA+ LFDMIP KDLISWT+MIAGYGMHGFG
Sbjct: 520 HGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFG 579
Query: 541 CDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYAC 600
+AI+TFN+MR AGIEPDE SF ++L ACSHSGL++EGW+FFN MR EC +EPKLEHYAC
Sbjct: 580 NEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYAC 639
Query: 601 MVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDN 660
+VDLL+R GNLS+AY+FIE MP+ PD TIWG LL GCRIHH+VKLAEKVAEH+FELEPDN
Sbjct: 640 VVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDN 699
Query: 661 TGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIEIKGKVNIFVAGGSSHPHA 720
T YYV+LANVYAEAEKWEEVKKLR+++ +RG K+NPGCSWIE+ GK NIFVAG S HP A
Sbjct: 700 TRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGNSKHPQA 759
Query: 721 KKIESLLKRLRLEMKREGYFPKTRYALINADEMEKEVALCGHSEKLAMAFGILNLPAGQT 780
KKI+ LL +L ++M+ E Y RY LIN D+MEKE+ CGHSEK AMAFGILNLP G+T
Sbjct: 760 KKIDVLLSKLTMQMQNEDYSSMFRYVLINEDDMEKEMIQCGHSEKSAMAFGILNLPPGRT 819
Query: 781 IRVTKNLRVCGDCHEMAKFMSKTARREIVLRDSNRFHHFKDGRCSCR 827
+RV+KN RVCGDCHEM KFMSKT + EIVLRDSNRFHHFKDG CSCR
Sbjct: 820 VRVSKNRRVCGDCHEMGKFMSKTTKMEIVLRDSNRFHHFKDGLCSCR 866
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1053 bits (2724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/828 (62%), Positives = 637/828 (76%), Gaps = 46/828 (5%)
Query: 47 TINPISASISKTLVCKTKNYNAEIGRFCEVGNLEKAMEVLYSSEKSKIDTKTYCSILQLC 106
T++ + SI+ T + N ++ RFCE GNL+ A+++L+ S K ID +T CS+LQLC
Sbjct: 46 TVSDRADSIT-TFDRSVTDANTQLRRFCESGNLKNAVKLLHVSGKWDIDPRTLCSVLQLC 104
Query: 107 ADLKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNKIDNGKVFIW 166
AD KSL+DGK+V + I +G V+D LGSKL M+ CGDLKE RVF+++ K W
Sbjct: 105 ADSKSLKDGKEVDNFIRGNGFVLDSN-LGSKLALMYTNCGDLKEASRVFDQVKIEKALFW 163
Query: 167 NLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAV---------------- 210
N+LM+E +K+G+F S+ LFKKM S G+ DSYTFSCV K +
Sbjct: 164 NILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILK 223
Query: 211 --------VGNS--------RRVKDAHKLFDELSDRDVVSWNCMISGYIANGVAEKGLEV 254
VGNS RV A K+FDE+++RDV+SWN +I+GY++NG+AEKGL V
Sbjct: 224 SGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSV 283
Query: 255 FKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSK 314
F +ML G +DLAT+V+V +GCA+ + GRAVH F +KACFS+E F NTLLDMYSK
Sbjct: 284 FVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSK 343
Query: 315 CGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSI 374
CGDLD A VF +M RSVVS+TSMIAGYAREG+ A++LF M EGI PDVY +T++
Sbjct: 344 CGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAV 403
Query: 375 LHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDI 434
L+ CA + LL+ GK VH++IKENDM ++VSNALMDMYAKCGSM +AE VF++M VKDI
Sbjct: 404 LNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRVKDI 463
Query: 435 VSWNTMIG----------ALDLFVAML--QNFEPDGVTMACILPACASLAALERGREIHG 482
+SWNT+IG AL LF +L + F PD T+AC+LPACASL+A ++GREIHG
Sbjct: 464 ISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKGREIHG 523
Query: 483 YILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCD 542
YI+R+G +DR+VAN++VDMY KCG L+LAR LFD I +KDL+SWT+MIAGYGMHGFG +
Sbjct: 524 YIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSWTVMIAGYGMHGFGKE 583
Query: 543 AIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMV 602
AIA FN MRQAGIEPDE+SF+S+LYACSHSGLVDEGWRFFN+MR+EC IEP +EHYAC+V
Sbjct: 584 AIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIV 643
Query: 603 DLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTG 662
D+L+RTGNLS+AYRFIE MP+ PDATIWG+LLCGCRIHH+VKLAE+VAE VFELEP+NTG
Sbjct: 644 DMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAERVAEKVFELEPENTG 703
Query: 663 YYVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIEIKGKVNIFVAGGSSHPHAKK 722
YYVL+AN+YAEAEKWEEVK+LR++I +RGL+KNPGCSWIEIKG+VNIFVAG SS+P +K
Sbjct: 704 YYVLMANIYAEAEKWEEVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETEK 763
Query: 723 IESLLKRLRLEMKREGYFPKTRYALINADEMEKEVALCGHSEKLAMAFGILNLPAGQTIR 782
IE+ L+ +R M EGY P T+YALI+A+EMEKE ALCGHSEKLAMA GI++ G+ IR
Sbjct: 764 IEAFLRGVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIR 823
Query: 783 VTKNLRVCGDCHEMAKFMSKTARREIVLRDSNRFHHFKDGRCSCRGFW 830
VTKNLRVCGDCHEMAKFMSK RREIVLRDSNRFH FKDG CSCRGFW
Sbjct: 824 VTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 830 | ||||||
| TAIR|locus:2124137 | 871 | DOT4 "DEFECTIVELY ORGANIZED TR | 0.743 | 0.708 | 0.669 | 2.1e-235 | |
| TAIR|locus:2118964 | 823 | EMB2758 "embryo defective 2758 | 0.736 | 0.742 | 0.4 | 1.7e-137 | |
| TAIR|locus:505006130 | 970 | AT1G18485 [Arabidopsis thalian | 0.739 | 0.632 | 0.378 | 2.2e-135 | |
| TAIR|locus:2202074 | 809 | CRR22 "CHLORORESPIRATORY REDUC | 0.740 | 0.760 | 0.417 | 2.3e-135 | |
| TAIR|locus:2196583 | 866 | ECB2 "EARLY CHLOROPLAST BIOGEN | 0.732 | 0.702 | 0.404 | 2.6e-134 | |
| TAIR|locus:2096414 | 882 | AT3G03580 [Arabidopsis thalian | 0.839 | 0.790 | 0.389 | 2.1e-132 | |
| TAIR|locus:2038603 | 868 | AT2G27610 "AT2G27610" [Arabido | 0.739 | 0.707 | 0.383 | 8.7e-132 | |
| TAIR|locus:2102852 | 657 | CRR2 "AT3G46790" [Arabidopsis | 0.544 | 0.687 | 0.442 | 7e-128 | |
| TAIR|locus:2119440 | 1064 | AT4G13650 [Arabidopsis thalian | 0.765 | 0.596 | 0.353 | 7.1e-126 | |
| TAIR|locus:2178188 | 995 | MEF7 "AT5G09950" [Arabidopsis | 0.737 | 0.615 | 0.391 | 1.5e-125 |
| TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2270 (804.1 bits), Expect = 2.1e-235, P = 2.1e-235
Identities = 421/629 (66%), Positives = 515/629 (81%)
Query: 214 SRRVKDAHKLFDELSDRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTV 273
++RV A K+FDE+++RDV+SWN +I+GY++NG+AEKGL VF +ML G +DLAT+V+V
Sbjct: 243 NQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSV 302
Query: 274 LSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSV 333
+GCA+ + GRAVH+ +KACFS+E F NTLLDMYSKCGDLD A VF +M +RSV
Sbjct: 303 FAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSV 362
Query: 334 VSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDY 393
VS+TSMIAGYAREG+ A++LF M EGI PDVY +T++L+ CA LL+ GK VH++
Sbjct: 363 VSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEW 422
Query: 394 IKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIG----------A 443
IKEND+ ++VSNALMDMYAKCGSM +AE VF++M VKDI+SWNT+IG A
Sbjct: 423 IKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEA 482
Query: 444 LDLFVAMLQN--FEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVD 501
L LF +L+ F PD T+AC+LPACASL+A ++GREIHGYI+R+G +DR+VAN++VD
Sbjct: 483 LSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVD 542
Query: 502 MYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVS 561
MY KCG L+LA LFD I +KDL+SWT+MIAGYGMHGFG +AIA FN MRQAGIE DE+S
Sbjct: 543 MYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEIS 602
Query: 562 FISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM 621
F+S+LYACSHSGLVDEGWRFFN+MR+EC IEP +EHYAC+VD+L+RTG+L +AYRFIE M
Sbjct: 603 FVSLLYACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENM 662
Query: 622 PVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVK 681
P+ PDATIWG+LLCGCRIHH+VKLAEKVAE VFELEP+NTGYYVL+AN+YAEAEKWE+VK
Sbjct: 663 PIPPDATIWGALLCGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVK 722
Query: 682 KLREKISRRGLKKNPGCSWIEIKGKVNIFVAGGSSHPHAKKIESXXXXXXXXXXXXGYFP 741
+LR++I +RGL+KNPGCSWIEIKG+VNIFVAG SS+P + IE+ GY P
Sbjct: 723 RLRKRIGQRGLRKNPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSP 782
Query: 742 KTRYALINADEMEKEVALCGHSEKLAMAFGILNLPAGQTIRVTKNLRVCGDCHEMAKFMS 801
T+YALI+A+EMEKE ALCGHSEKLAMA GI++ G+ IRVTKNLRVCGDCHEMAKFMS
Sbjct: 783 LTKYALIDAEEMEKEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMS 842
Query: 802 KTARREIVLRDSNRFHHFKDGRCSCRGFW 830
K RREIVLRDSNRFH FKDG CSCRGFW
Sbjct: 843 KLTRREIVLRDSNRFHQFKDGHCSCRGFW 871
|
|
| TAIR|locus:2118964 EMB2758 "embryo defective 2758" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1234 (439.4 bits), Expect = 1.7e-137, Sum P(2) = 1.7e-137
Identities = 252/630 (40%), Positives = 374/630 (59%)
Query: 215 RRVKDAHKLFDELSDRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFN-VDLATMVTV 273
+ V +A LFDE+ RD+ SWN MISGY +G A++ L L+ G +D T+V++
Sbjct: 199 KAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALT-----LSNGLRAMDSVTVVSL 253
Query: 274 LSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSV 333
LS C G G +H++++K E+ +N L+D+Y++ G L +VF++M R +
Sbjct: 254 LSACTEAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDL 313
Query: 334 VSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDY 393
+SW S+I Y AI LF+ M I+PD + S+ + G + + V +
Sbjct: 314 ISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGF 373
Query: 394 -IKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIG--ALDLF--- 447
+++ + + NA++ MYAK G + A +VFN +P D++SWNT+I A + F
Sbjct: 374 TLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASE 433
Query: 448 -VAMLQNFEPDGV------TMACILPACASLAALERGREIHGYILRHGISADRNVANAIV 500
+ M E +G T +LPAC+ AL +G ++HG +L++G+ D V ++
Sbjct: 434 AIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSLA 493
Query: 501 DMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV 560
DMY KCG L A SLF IP + + W +IA +G HG G A+ F +M G++PD +
Sbjct: 494 DMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHI 553
Query: 561 SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEM 620
+F+++L ACSHSGLVDEG F MM+ + I P L+HY CMVD+ R G L A +FI+
Sbjct: 554 TFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKS 613
Query: 621 MPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEV 680
M + PDA+IWG+LL CR+H V L + +EH+FE+EP++ GY+VLL+N+YA A KWE V
Sbjct: 614 MSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGV 673
Query: 681 KKLREKISRRGLKKNPGCSWIEIKGKVNIFVAGGSSHPHAKKIESXXXXXXXXXXXXGYF 740
++R +GL+K PG S +E+ KV +F G +HP +++ GY
Sbjct: 674 DEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYV 733
Query: 741 PKTRYALINADEMEKEVALCGHSEKLAMAFGILNLPAGQTIRVTKNLRVCGDCHEMAKFM 800
P R+ L + ++ EKE L HSE+LA+AF ++ PA TIR+ KNLRVCGDCH + KF+
Sbjct: 734 PDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFI 793
Query: 801 SKTARREIVLRDSNRFHHFKDGRCSCRGFW 830
SK REI++RDSNRFHHFK+G CSC +W
Sbjct: 794 SKITEREIIVRDSNRFHHFKNGVCSCGDYW 823
|
|
| TAIR|locus:505006130 AT1G18485 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1148 (409.2 bits), Expect = 2.2e-135, Sum P(2) = 2.2e-135
Identities = 238/628 (37%), Positives = 363/628 (57%)
Query: 217 VKDAHKLFDELSDRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNV--DLATMVTVL 274
+ +A +F ++++VVSWN M+ G+ A G +V ++ML G +V D T++ +
Sbjct: 343 ITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAV 402
Query: 275 SGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSVV 334
C + L + +H ++LK F N + Y+KCG L A RVF + ++V
Sbjct: 403 PVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVN 462
Query: 335 SWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYI 394
SW ++I G+A+ ++ M G+ PD + + S+L AC+ L +GK+VH +I
Sbjct: 463 SWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFI 522
Query: 395 KENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMI-G---------AL 444
N ++ L+V +++ +Y CG + +++F+ M K +VSWNT+I G AL
Sbjct: 523 IRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRAL 582
Query: 445 DLFVAM-LQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMY 503
+F M L + G++M + AC+ L +L GRE H Y L+H + D +A +++DMY
Sbjct: 583 GVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMY 642
Query: 504 VKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFI 563
K G + + +F+ + K SW MI GYG+HG +AI F +M++ G PD+++F+
Sbjct: 643 AKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFL 702
Query: 564 SVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFI-EMMP 622
VL AC+HSGL+ EG R+ + M+ ++P L+HYAC++D+L R G L +A R + E M
Sbjct: 703 GVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMS 762
Query: 623 VAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKK 682
D IW SLL CRIH +++ EKVA +FELEP+ YVLL+N+YA KWE+V+K
Sbjct: 763 EEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRK 822
Query: 683 LREKISRRGLKKNPGCSWIEIKGKVNIFVAGGSSHPHAKKIESXXXXXXXXXXXXGYFPK 742
+R++++ L+K+ GCSWIE+ KV FV G ++I+S GY P
Sbjct: 823 VRQRMNEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPD 882
Query: 743 TRYALINADEMEKEVALCGHSEKLAMAFGILNLPAGQTIRVTKNLRVCGDCHEMAKFMSK 802
T + E EK L GHSEKLA+ +G++ G TIRV KNLR+C DCH AK +SK
Sbjct: 883 TMSVQHDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISK 942
Query: 803 TARREIVLRDSNRFHHFKDGRCSCRGFW 830
REIV+RD+ RFHHFK+G CSC +W
Sbjct: 943 VMEREIVVRDNKRFHHFKNGVCSCGDYW 970
|
|
| TAIR|locus:2202074 CRR22 "CHLORORESPIRATORY REDUCTION22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1326 (471.8 bits), Expect = 2.3e-135, P = 2.3e-135
Identities = 262/627 (41%), Positives = 384/627 (61%)
Query: 215 RRVKDAHKLFDELSDRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVL 274
R+V +A K+FD + +RD+VSWN +++GY NG+A LE+ K M T+V+VL
Sbjct: 184 RQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVL 243
Query: 275 SGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSVV 334
+ + G+ +H +A+++ F ++ + L+DMY+KCG L+ A ++F+ M ER+VV
Sbjct: 244 PAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVV 303
Query: 335 SWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYI 394
SW SMI Y + A+ +F+ M+ EG++P ++ LHACA G LE G+ +H
Sbjct: 304 SWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLS 363
Query: 395 KENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMI-G---------AL 444
E + ++ V N+L+ MY KC + A S+F ++ + +VSWN MI G AL
Sbjct: 364 VELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDAL 423
Query: 445 DLFVAML-QNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMY 503
+ F M + +PD T ++ A A L+ + IHG ++R + + V A+VDMY
Sbjct: 424 NYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMY 483
Query: 504 VKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFI 563
KCG +++AR +FDM+ + + +W MI GYG HGFG A+ F +M++ I+P+ V+F+
Sbjct: 484 AKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFL 543
Query: 564 SVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMPV 623
SV+ ACSHSGLV+ G + F MM+ +IE ++HY MVDLL R G L+EA+ FI MPV
Sbjct: 544 SVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPV 603
Query: 624 APDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKL 683
P ++G++L C+IH V AEK AE +FEL PD+ GY+VLLAN+Y A WE+V ++
Sbjct: 604 KPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQV 663
Query: 684 REKISRRGLKKNPGCSWIEIKGKVNIFVAGGSSHPHAKKIESXXXXXXXXXXXXGYFPKT 743
R + R+GL+K PGCS +EIK +V+ F +G ++HP +KKI + GY P T
Sbjct: 664 RVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHIKEAGYVPDT 723
Query: 744 RYALINADEMEKEVALCGHSEKLAMAFGILNLPAGQTIRVTKNLRVCGDCHEMAKFMSKT 803
L + KE L HSEKLA++FG+LN AG TI V KNLRVC DCH K++S
Sbjct: 724 NLVL-GVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVCADCHNATKYISLV 782
Query: 804 ARREIVLRDSNRFHHFKDGRCSCRGFW 830
REIV+RD RFHHFK+G CSC +W
Sbjct: 783 TGREIVVRDMQRFHHFKNGACSCGDYW 809
|
|
| TAIR|locus:2196583 ECB2 "EARLY CHLOROPLAST BIOGENESIS2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1316 (468.3 bits), Expect = 2.6e-134, P = 2.6e-134
Identities = 251/620 (40%), Positives = 379/620 (61%)
Query: 217 VKDAHKLFDELSDRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSG 276
VK A LFD + RD++SWN MISGY NG+ +GLE+F M L + DL T+ +V+S
Sbjct: 247 VKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISA 306
Query: 277 CANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSVVSW 336
C G GR +HA+ + F+ +IS N+L MY G A ++F +M + +VSW
Sbjct: 307 CELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSW 366
Query: 337 TSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKE 396
T+MI+GY + D AI +R M ++ ++PD + ++L ACA G L+ G ++H +
Sbjct: 367 TTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIK 426
Query: 397 NDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDL----FVAML- 451
+ S + V+N L++MY+KC + A +F+ +P K+++SW ++I L L F A++
Sbjct: 427 ARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIF 486
Query: 452 -----QNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKC 506
+P+ +T+ L ACA + AL G+EIH ++LR G+ D + NA++DMYV+C
Sbjct: 487 LRQMKMTLQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRC 546
Query: 507 GVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVL 566
G + A S F+ KD+ SW I++ GY G G + F+ M ++ + PDE++FIS+L
Sbjct: 547 GRMNTAWSQFNS-QKKDVTSWNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITFISLL 605
Query: 567 YACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMPVAPD 626
CS S +V +G +F+ M + + P L+HYAC+VDLL R G L EA++FI+ MPV PD
Sbjct: 606 CGCSKSQMVRQGLMYFSKME-DYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPD 664
Query: 627 ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREK 686
+WG+LL CRIHH++ L E A+H+FEL+ + GYY+LL N+YA+ KW EV K+R
Sbjct: 665 PAVWGALLNACRIHHKIDLGELSAQHIFELDKKSVGYYILLCNLYADCGKWREVAKVRRM 724
Query: 687 ISRRGLKKNPGCSWIEIKGKVNIFVAGGSSHPHAKKIESXXXXXXXXXXXXGYFPKTRYA 746
+ GL + GCSW+E+KGKV+ F++ HP K+I + G + +
Sbjct: 725 MKENGLTVDAGCSWVEVKGKVHAFLSDDKYHPQTKEINTVLEGFYEKMSEVGLTKISESS 784
Query: 747 LINADEMEKEVALCGHSEKLAMAFGILNLPAGQTIRVTKNLRVCGDCHEMAKFMSKTARR 806
++ E+ ++ CGHSE+ A+AFG++N G I VTKNL +C +CH+ KF+SKT RR
Sbjct: 785 SMDETEISRDEIFCGHSERKAIAFGLINTVPGMPIWVTKNLSMCENCHDTVKFISKTVRR 844
Query: 807 EIVLRDSNRFHHFKDGRCSC 826
EI +RD+ FHHFKDG CSC
Sbjct: 845 EISVRDAEHFHHFKDGECSC 864
|
|
| TAIR|locus:2096414 AT3G03580 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1298 (462.0 bits), Expect = 2.1e-132, P = 2.1e-132
Identities = 280/719 (38%), Positives = 415/719 (57%)
Query: 129 IDDGVLGSKLVFMFVTCGDLKEGRRVFNKIDNGKVFIWNLLMHEYSKT-GNFKESLYLFK 187
+ D V + L+ + + G +E +++++ N + + + GN L + K
Sbjct: 169 VRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGN----LLVVK 224
Query: 188 KMQSL-GIAADSYTFSCVLK---CLAVVGNSRRVKDAHKLFDELSDRDVVSWNCMISGYI 243
+ Q L G A S S V+ +A+ RR DA ++FDE+ RD VS+N MI GY+
Sbjct: 225 QGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYL 284
Query: 244 ANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEIS 303
+ E+ + +F E L+ F DL T+ +VL C + L + ++ + LKA F E +
Sbjct: 285 KLEMVEESVRMFLENLDQ-FKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLEST 343
Query: 304 FNNTLLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREG 363
N L+D+Y+KCGD+ A VF M + VSW S+I+GY + G A++LF+ M+
Sbjct: 344 VRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIME 403
Query: 364 IEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAE 423
+ D ++ L+ GK +H ++ + L VSNAL+DMYAKCG + D+
Sbjct: 404 EQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSL 463
Query: 424 SVFNQMPVKDIVSWNTMIGALDLF---------VAMLQNFE--PDGVTMACILPACASLA 472
+F+ M D V+WNT+I A F ++ E PD T LP CASLA
Sbjct: 464 KIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLA 523
Query: 473 ALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIA 532
A G+EIH +LR G ++ + NA+++MY KCG L + +F+ + +D+++WT MI
Sbjct: 524 AKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIY 583
Query: 533 GYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIE 592
YGM+G G A+ TF DM ++GI PD V FI+++YACSHSGLVDEG F M+ I+
Sbjct: 584 AYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKID 643
Query: 593 PKLEHYACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEH 652
P +EHYAC+VDLLSR+ +S+A FI+ MP+ PDA+IW S+L CR +++ AE+V+
Sbjct: 644 PMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWASVLRACRTSGDMETAERVSRR 703
Query: 653 VFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIEIKGKVNIFVA 712
+ EL PD+ GY +L +N YA KW++V +R+ + + + KNPG SWIE+ V++F +
Sbjct: 704 IIELNPDDPGYSILASNAYAALRKWDKVSLIRKSLKDKHITKNPGYSWIEVGKNVHVFSS 763
Query: 713 GGSSHPHAKKIESXXXXXXXXXXXXGYFPKTRYALINADEME-KEVALCGHSEKLAMAFG 771
G S P ++ I GY P R N +E E K +CGHSE+LA+AFG
Sbjct: 764 GDDSAPQSEAIYKSLEILYSLMAKEGYIPDPREVSQNLEEEEEKRRLICGHSERLAIAFG 823
Query: 772 ILNLPAGQTIRVTKNLRVCGDCHEMAKFMSKTARREIVLRDSNRFHHFKDGRCSCRGFW 830
+LN G ++V KNLRVCGDCHE+ K +SK REI++RD+NRFH FKDG CSC+ W
Sbjct: 824 LLNTEPGTPLQVMKNLRVCGDCHEVTKLISKIVGREILVRDANRFHLFKDGTCSCKDRW 882
|
|
| TAIR|locus:2038603 AT2G27610 "AT2G27610" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1142 (407.1 bits), Expect = 8.7e-132, Sum P(2) = 8.7e-132
Identities = 246/641 (38%), Positives = 372/641 (58%)
Query: 205 LKCLAVVGNSRRVKDAHKLFDELSDRDVVSWNCMISGYIANGVAEKGLEVFKEM-LNLGF 263
LKC GN R+ A LFD+ + VV+WN MISGY ANG+ + L +F M LN
Sbjct: 240 LKC----GNVRK---ARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNY-V 291
Query: 264 NVDLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIR 323
+ ++ +V+ CAN L F +H +K F + + L+ YSKC + A+R
Sbjct: 292 RLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALR 351
Query: 324 VFEKMG-ERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDG 382
+F+++G +VVSWT+MI+G+ + + A+ LF M R+G+ P+ + + IL A
Sbjct: 352 LFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVIS 411
Query: 383 LLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIG 442
E+ V +K N +SS V AL+D Y K G + +A VF+ + KDIV+W+ M+
Sbjct: 412 PSEVHAQV---VKTNYERSST-VGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLA 467
Query: 443 ----------ALDLFVAMLQN-FEPDGVTMACILPACASL-AALERGREIHGYILRHGIS 490
A+ +F + + +P+ T + IL CA+ A++ +G++ HG+ ++ +
Sbjct: 468 GYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLD 527
Query: 491 ADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDM 550
+ V++A++ MY K G + A +F KDL+SW MI+GY HG A+ F +M
Sbjct: 528 SSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEM 587
Query: 551 RQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGN 610
++ ++ D V+FI V AC+H+GLV+EG ++F++M +C I P EH +CMVDL SR G
Sbjct: 588 KKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQ 647
Query: 611 LSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANV 670
L +A + IE MP +TIW ++L CR+H + +L AE + ++P+++ YVLL+N+
Sbjct: 648 LEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNM 707
Query: 671 YAEAEKWEEVKKLREKISRRGLKKNPGCSWIEIKGKVNIFVAGGSSHPHAKKIESXXXXX 730
YAE+ W+E K+R+ ++ R +KK PG SWIE+K K F+AG SHP +I
Sbjct: 708 YAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDL 767
Query: 731 XXXXXXXGYFPKTRYALINADEMEKEVALCGHSEKLAMAFGILNLPAGQTIRVTKNLRVC 790
GY P T Y L + D+ KE L HSE+LA+AFG++ P G + + KNLRVC
Sbjct: 768 STRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVC 827
Query: 791 GDCHEMAKFMSKTARREIVLRDSNRFHHFK-DGRCSCRGFW 830
GDCH + K ++K REIV+RDSNRFHHF DG CSC FW
Sbjct: 828 GDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868
|
|
| TAIR|locus:2102852 CRR2 "AT3G46790" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1058 (377.5 bits), Expect = 7.0e-128, Sum P(2) = 7.0e-128
Identities = 206/466 (44%), Positives = 296/466 (63%)
Query: 378 CACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSW 437
C + L++ GK++H ++ S +Y+ L+DMYA+ G + A VF MPV+++VSW
Sbjct: 193 CTVNHLMK-GKEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSW 251
Query: 438 NTMIG----------ALDLFVAMLQNFE---PDGVTMACILPACASLAALERGREIHGYI 484
+ MI AL F M++ + P+ VTM +L ACASLAALE+G+ IHGYI
Sbjct: 252 SAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYI 311
Query: 485 LRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAI 544
LR G+ + V +A+V MY +CG L + + +FD + +D++SW +I+ YG+HG+G AI
Sbjct: 312 LRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAI 371
Query: 545 ATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDL 604
F +M G P V+F+SVL ACSH GLV+EG R F M + I+P++EHYACMVDL
Sbjct: 372 QIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDL 431
Query: 605 LSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYY 664
L R L EA + ++ M P +WGSLL CRIH V+LAE+ + +F LEP N G Y
Sbjct: 432 LGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNY 491
Query: 665 VLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIEIKGKVNIFVAGGSSHPHAKKIE 724
VLLA++YAEA+ W+EVK++++ + RGL+K PG W+E++ K+ FV+ +P ++I
Sbjct: 492 VLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIH 551
Query: 725 SXXXXXXXXXXXXGYFPKTRYALINADEMEKEVALCGHSEKLAMAFGILNLPAGQTIRVT 784
+ GY P+T+ L + EKE + GHSEKLA+AFG++N G+ IR+T
Sbjct: 552 AFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIRIT 611
Query: 785 KNLRVCGDCHEMAKFMSKTARREIVLRDSNRFHHFKDGRCSCRGFW 830
KNLR+C DCH KF+SK +EI++RD NRFH FK+G CSC +W
Sbjct: 612 KNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGVCSCGDYW 657
|
|
| TAIR|locus:2119440 AT4G13650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1123 (400.4 bits), Expect = 7.1e-126, Sum P(2) = 7.1e-126
Identities = 230/651 (35%), Positives = 357/651 (54%)
Query: 192 LGIAADSYTFSCVLKCLAVVGNSRRVKDAHKLFDELSDRDVVSWNCMISGYIANGVAEKG 251
LG A+++ +L A + ++ A F E +VV WN M+ Y
Sbjct: 418 LGFASNNKIEGALLNLYAKCAD---IETALDYFLETEVENVVLWNVMLVAYGLLDDLRNS 474
Query: 252 LEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDM 311
+F++M + T ++L C G L G +H+ +K F + L+DM
Sbjct: 475 FRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDM 534
Query: 312 YSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAI 371
Y+K G LD A + + + VVSWT+MIAGY + D A+ FR M+ GI D +
Sbjct: 535 YAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGL 594
Query: 372 TSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPV 431
T+ + ACA L+ G+ +H + S L NAL+ +Y++CG + ++ F Q
Sbjct: 595 TNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEA 654
Query: 432 KDIVSWNTMIG----------ALDLFVAM-LQNFEPDGVTMACILPACASLAALERGREI 480
D ++WN ++ AL +FV M + + + T + A + A +++G+++
Sbjct: 655 GDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMKQGKQV 714
Query: 481 HGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFG 540
H I + G ++ V NA++ MY KCG + A F + K+ +SW +I Y HGFG
Sbjct: 715 HAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFG 774
Query: 541 CDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYAC 600
+A+ +F+ M + + P+ V+ + VL ACSH GLVD+G +F M E + PK EHY C
Sbjct: 775 SEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVC 834
Query: 601 MVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDN 660
+VD+L+R G LS A FI+ MP+ PDA +W +LL C +H +++ E A H+ ELEP++
Sbjct: 835 VVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPED 894
Query: 661 TGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIEIKGKVNIFVAGGSSHPHA 720
+ YVLL+N+YA ++KW+ R+K+ +G+KK PG SWIE+K ++ F G +HP A
Sbjct: 895 SATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSFYVGDQNHPLA 954
Query: 721 KKIESXXXXXXXXXXXXGYFPKTRYALINADEME-KEVALCGHSEKLAMAFGILNLPAGQ 779
+I GY ++L+N + E K+ + HSEKLA++FG+L+LPA
Sbjct: 955 DEIHEYFQDLTKRASEIGYVQDC-FSLLNELQHEQKDPIIFIHSEKLAISFGLLSLPATV 1013
Query: 780 TIRVTKNLRVCGDCHEMAKFMSKTARREIVLRDSNRFHHFKDGRCSCRGFW 830
I V KNLRVC DCH KF+SK + REI++RD+ RFHHF+ G CSC+ +W
Sbjct: 1014 PINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCKDYW 1064
|
|
| TAIR|locus:2178188 MEF7 "AT5G09950" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1139 (406.0 bits), Expect = 1.5e-125, Sum P(2) = 1.5e-125
Identities = 248/633 (39%), Positives = 359/633 (56%)
Query: 217 VKDAHKLFDELSDRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSG 276
+ DA ++F ++D+D VSWN MI+G NG + +E +K M T+++ LS
Sbjct: 365 IADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSS 424
Query: 277 CANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSVVSW 336
CA+ G+ +H +LK +S +N L+ +Y++ G L+ ++F M E VSW
Sbjct: 425 CASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSW 484
Query: 337 TSMIAGYAR-EGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIK 395
S+I AR E A+ F R G + + +S+L A + E+GK +H
Sbjct: 485 NSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLAL 544
Query: 396 ENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVK-DIVSWNTMIG----------AL 444
+N++ NAL+ Y KCG M E +F++M + D V+WN+MI AL
Sbjct: 545 KNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKAL 604
Query: 445 DLFVAMLQNFEP-DGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMY 503
DL MLQ + D A +L A AS+A LERG E+H +R + +D V +A+VDMY
Sbjct: 605 DLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMY 664
Query: 504 VKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAG-IEPDEVSF 562
KCG L A F+ +P ++ SW MI+GY HG G +A+ F M+ G PD V+F
Sbjct: 665 SKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTF 724
Query: 563 ISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMP 622
+ VL ACSH+GL++EG++ F M + P++EH++CM D+L R G L + FIE MP
Sbjct: 725 VGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMP 784
Query: 623 VAPDATIWGSLL--CGCRIH-HEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEE 679
+ P+ IW ++L C CR + + +L +K AE +F+LEP+N YVLL N+YA +WE+
Sbjct: 785 MKPNVLIWRTVLGAC-CRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWED 843
Query: 680 VKKLREKISRRGLKKNPGCSWIEIKGKVNIFVAGGSSHPHAKKIESXXXXXXXXXXXXGY 739
+ K R+K+ +KK G SW+ +K V++FVAG SHP A I GY
Sbjct: 844 LVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKELNRKMRDAGY 903
Query: 740 FPKTRYALINADEMEKEVALCGHSEKLAMAFGILNLPAGQT--IRVTKNLRVCGDCHEMA 797
P+T +AL + ++ KE L HSEKLA+AF +L T IR+ KNLRVCGDCH
Sbjct: 904 VPQTGFALYDLEQENKEEILSYHSEKLAVAF-VLAAQRSSTLPIRIMKNLRVCGDCHSAF 962
Query: 798 KFMSKTARREIVLRDSNRFHHFKDGRCSCRGFW 830
K++SK R+I+LRDSNRFHHF+DG CSC FW
Sbjct: 963 KYISKIEGRQIILRDSNRFHHFQDGACSCSDFW 995
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SN39 | PP320_ARATH | No assigned EC number | 0.6262 | 0.9192 | 0.8760 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 830 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.0 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-158 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-48 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 6e-26 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 8e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.003 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 699 bits (1805), Expect = 0.0
Identities = 332/860 (38%), Positives = 502/860 (58%), Gaps = 55/860 (6%)
Query: 13 LFFSPPNQSYGKKFASYK-PSTLPIIVSSKSHSSCTINPISASISKTLVCKTKNYNAEIG 71
F+ P + + AS+K P+ LP S ++ ++S S T + N+++
Sbjct: 5 HFYLNPGKPNLFQLASHKAPNVLPYWNFHGRKRSRGLSVAASSSSST-----HDSNSQLR 59
Query: 72 RFCEVGNLEKAMEVLYSSEKSKI--DTKTYCSILQLCADLKSLEDGKKVHSIICESGIVI 129
C G LE+A+++L S ++ ++ D Y ++ +LC +++E+G +V S S
Sbjct: 60 ALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSS--HP 117
Query: 130 DDGV-LGSKLVFMFVTCGDLKEGRRVFNKIDNGKVFIWNLLMHEYSKTGNFKESLYLFKK 188
GV LG+ ++ MFV G+L VF K+ +F WN+L+ Y+K G F E+L L+ +
Sbjct: 118 SLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHR 177
Query: 189 MQSLGIAADSYTFSCVLKCLAVVGNSRR-------------------------------- 216
M G+ D YTF CVL+ + + R
Sbjct: 178 MLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGD 237
Query: 217 VKDAHKLFDELSDRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSG 276
V A +FD + RD +SWN MISGY NG +GLE+F M L + DL T+ +V+S
Sbjct: 238 VVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISA 297
Query: 277 CANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSVVSW 336
C G GR +H + +K F+ ++S N+L+ MY G A +VF +M + VSW
Sbjct: 298 CELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSW 357
Query: 337 TSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKE 396
T+MI+GY + G+ D A+ + M ++ + PD I S+L ACAC G L++G +H+ +
Sbjct: 358 TAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAER 417
Query: 397 NDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIG----------ALDL 446
+ S + V+NAL++MY+KC + A VF+ +P KD++SW ++I AL
Sbjct: 418 KGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIF 477
Query: 447 FVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKC 506
F ML +P+ VT+ L ACA + AL G+EIH ++LR GI D + NA++D+YV+C
Sbjct: 478 FRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRC 537
Query: 507 GVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVL 566
G + A + F+ KD++SW I++ GY HG G A+ FN M ++G+ PDEV+FIS+L
Sbjct: 538 GRMNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL 596
Query: 567 YACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMPVAPD 626
ACS SG+V +G +F+ M + +I P L+HYAC+VDLL R G L+EAY FI MP+ PD
Sbjct: 597 CACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPD 656
Query: 627 ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREK 686
+WG+LL CRIH V+L E A+H+FEL+P++ GYY+LL N+YA+A KW+EV ++R+
Sbjct: 657 PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKT 716
Query: 687 ISRRGLKKNPGCSWIEIKGKVNIFVAGGSSHPHAKKIESLLKRLRLEMKREGYFPKTRYA 746
+ GL +PGCSW+E+KGKV+ F+ SHP K+I ++L+ +MK G + +
Sbjct: 717 MRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASG-LAGSESS 775
Query: 747 LINADEMEKEVALCGHSEKLAMAFGILNLPAGQTIRVTKNLRVCGDCHEMAKFMSKTARR 806
++ E+ K+ CGHSE+LA+AFG++N G I VTKNL +C +CH KF+SK RR
Sbjct: 776 SMDEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRR 835
Query: 807 EIVLRDSNRFHHFKDGRCSC 826
EI +RD+ +FHHFKDG CSC
Sbjct: 836 EISVRDTEQFHHFKDGECSC 855
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 477 bits (1230), Expect = e-158
Identities = 228/627 (36%), Positives = 350/627 (55%), Gaps = 17/627 (2%)
Query: 218 KDAHKLFDELSDRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLG--FNVDLATMVTVLS 275
KDA L D + VS I +A G + LE+F E+L G F + +T ++
Sbjct: 74 KDAR-LDDTQIRKSGVSLCSQIEKLVACGRHREALELF-EILEAGCPFTLPASTYDALVE 131
Query: 276 GCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSVVS 335
C ++ +AV+ + F + N +L M+ KCG L A R+F++M ER++ S
Sbjct: 132 ACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLAS 191
Query: 336 WTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIK 395
W ++I G G + A LFR M +G + + +L A A G G+ +H +
Sbjct: 192 WGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVL 251
Query: 396 ENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIG----------ALD 445
+ + +VS AL+DMY+KCG + DA VF+ MP K V+WN+M+ AL
Sbjct: 252 KTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALC 311
Query: 446 LFVAMLQN-FEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVAN-AIVDMY 503
L+ M + D T + ++ + LA LE ++ H ++R G D VAN A+VD+Y
Sbjct: 312 LYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI-VANTALVDLY 370
Query: 504 VKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFI 563
K G + AR++FD +P K+LISW +IAGYG HG G A+ F M G+ P+ V+F+
Sbjct: 371 SKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFL 430
Query: 564 SVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMPV 623
+VL AC +SGL ++GW F M I+P+ HYACM++LL R G L EAY I P
Sbjct: 431 AVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPF 490
Query: 624 APDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKL 683
P +W +LL CRIH ++L AE ++ + P+ YV+L N+Y + + E K+
Sbjct: 491 KPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKV 550
Query: 684 REKISRRGLKKNPGCSWIEIKGKVNIFVAGGSSHPHAKKIESLLKRLRLEMKREGYFPKT 743
E + R+GL +P C+WIE+K + + F +G HP +++I L L E+ GY +
Sbjct: 551 VETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEE 610
Query: 744 RYALINADEMEKEVALCGHSEKLAMAFGILNLPAGQTIRVTKNLRVCGDCHEMAKFMSKT 803
L + DE E++V+ HSEKLA+AFG++N +++T++ R+C DCH++ KF++
Sbjct: 611 NELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALV 670
Query: 804 ARREIVLRDSNRFHHFKDGRCSCRGFW 830
+REIV+RD++RFHHFK G+CSC +W
Sbjct: 671 TKREIVVRDASRFHHFKLGKCSCGDYW 697
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 182 bits (464), Expect = 2e-48
Identities = 119/460 (25%), Positives = 211/460 (45%), Gaps = 44/460 (9%)
Query: 30 KPSTLPIIVSSKSHSSCTINPISASISKTLVCKTKNYNAEIGRFCEVGNLEKAMEVLYSS 89
KP + I VS + I S +C GR E L E+L +
Sbjct: 62 KPEPIRIEVSESKDARLDDTQIRKSGVS--LCSQIEKLVACGRHREALEL---FEILEAG 116
Query: 90 EKSKIDTKTYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLK 149
+ TY ++++ C LKS+ K V+ + SG D + ++++ M V CG L
Sbjct: 117 CPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQ-YMMNRVLLMHVKCGMLI 175
Query: 150 EGRRVFNKIDNGKVFIWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTF-------- 201
+ RR+F+++ + W ++ GN++E+ LF++M G A+ TF
Sbjct: 176 DARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASA 235
Query: 202 ------------SCVLKCLAVVGNSR-------------RVKDAHKLFDELSDRDVVSWN 236
CVLK VVG++ ++DA +FD + ++ V+WN
Sbjct: 236 GLGSARAGQQLHCCVLK-TGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWN 294
Query: 237 CMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKA 296
M++GY +G +E+ L ++ EM + G ++D T ++ + L + HA ++
Sbjct: 295 SMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT 354
Query: 297 CFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLF 356
F +I N L+D+YSK G ++ A VF++M ++++SW ++IAGY G A+ +F
Sbjct: 355 GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMF 414
Query: 357 RGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALM-DMYAK 415
M+ EG+ P+ ++L AC GL E G ++ + EN + A M ++ +
Sbjct: 415 ERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGR 474
Query: 416 CGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFE 455
G + +A ++ + P K V+ M AL + +N E
Sbjct: 475 EGLLDEAYAMIRRAPFKPTVN---MWAALLTACRIHKNLE 511
|
Length = 697 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 6e-26
Identities = 51/132 (38%), Positives = 72/132 (54%), Gaps = 23/132 (17%)
Query: 696 PGCSWIEIKGKVNIFVAGGSSHPHAKKIESLLKRLRLEMKREGYFPKTRYALINADEME- 754
PGC W E K ++G SHP +K+ L +K EG P+T+ + D E
Sbjct: 1 PGCVWSEGK----KTLSGDGSHPTSKE------ELFQRIKVEGVVPETKEIGHDVDAEEF 50
Query: 755 -----KEVALCGHSEKLAMAFGILNLPAGQTIRVTKNL-RVCGDCHEMAKFMSKTARREI 808
K L H+EK A+A+G+L T R+ K L R+CGDCHE ++++K REI
Sbjct: 51 RDNGIKGKLLASHAEKQALAYGLL------TTRIIKVLKRMCGDCHEFFRYIAKYTGREI 104
Query: 809 VLRDSNRFHHFK 820
++RD +RFHHFK
Sbjct: 105 IVRDPSRFHHFK 116
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 8e-13
Identities = 74/311 (23%), Positives = 133/311 (42%), Gaps = 48/311 (15%)
Query: 290 HAFALKAC-----------FSKEI-----SFNNTLLDMYSKCGDLDGAIRVFEKMGERSV 333
HA KAC F+K I S N L+ + + D+DGA+RV + E +
Sbjct: 409 HAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGL 468
Query: 334 ----VSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKD 389
+T++I+ A+ G D +F MV G+E +V+ +++ CA G +
Sbjct: 469 KADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFG 528
Query: 390 VHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVA 449
+ ++ +++ V NAL+ + G++ A V +M A
Sbjct: 529 AYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMK------------------A 570
Query: 450 MLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVL 509
+PD +T+ ++ ACA+ ++R +E++ I + I V V+ + G
Sbjct: 571 ETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDW 630
Query: 510 VLARSLFDMIPAKDL------ISWTIMIAGYGMHGFGCD-AIATFNDMRQAGIEPDEVSF 562
A S++D + K + S + +AG H D A D R+ GI+ VS+
Sbjct: 631 DFALSIYDDMKKKGVKPDEVFFSALVDVAG---HAGDLDKAFEILQDARKQGIKLGTVSY 687
Query: 563 ISVLYACSHSG 573
S++ ACS++
Sbjct: 688 SSLMGACSNAK 698
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.0 bits (139), Expect = 1e-10
Identities = 15/48 (31%), Positives = 30/48 (62%)
Query: 332 SVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACA 379
VV++ ++I GY ++G + A++LF M + GI+P+VY + ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.1 bits (121), Expect = 3e-08
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 163 VFIWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLA 209
V +N L+ Y K G +E+L LF +M+ GI + YT+S ++ L
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 2e-07
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 231 DVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCAN 279
DVV++N +I GY G E+ L++F EM G ++ T ++ G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 1e-06
Identities = 12/50 (24%), Positives = 28/50 (56%)
Query: 522 KDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSH 571
D++++ +I GY G +A+ FN+M++ GI+P+ ++ ++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 3e-06
Identities = 77/393 (19%), Positives = 153/393 (38%), Gaps = 78/393 (19%)
Query: 231 DVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVH 290
D + +IS +G + EVF EM+N G ++ T ++ GCA G + +A
Sbjct: 471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV--AKAFG 528
Query: 291 AFALKACFSKEISFN----NTLLDMYSKCGDLDGAIRVFEKMGERSV------VSWTSMI 340
A+ + SK + + N L+ + G +D A V +M + ++ +++
Sbjct: 529 AYGIMR--SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALM 586
Query: 341 AGYAREGVFDGAIRLFRGMVREGIE--PDVYAITSILHACACDGLLEIGKDVHDYIKEND 398
A G D A +++ + I+ P+VY T +++C+ G + ++D +K+
Sbjct: 587 KACANAGQVDRAKEVYQMIHEYNIKGTPEVY--TIAVNSCSQKGDWDFALSIYDDMKKKG 644
Query: 399 MQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDG 458
++ +AL+D+ G D + F + +D A Q +
Sbjct: 645 VKPDEVFFSALVDV---AGHAGDLDKAFEIL--QD---------------ARKQGIKLGT 684
Query: 459 VTMACILPACASLA----ALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARS 514
V+ + ++ AC++ ALE +I LR +S NA+ + C L ++
Sbjct: 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVS----TMNAL--ITALCEGNQLPKA 738
Query: 515 LFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGL 574
L ++M++ G+ P+ +++ +L A
Sbjct: 739 L-----------------------------EVLSEMKRLGLCPNTITYSILLVASERKDD 769
Query: 575 VDEGWRFFNMMRYECNIEPKLEHYACMVDLLSR 607
D G + + + I+P L C+ L R
Sbjct: 770 ADVGLDLLSQAKEDG-IKPNLVMCRCITGLCLR 801
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 4e-06
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 334 VSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDV 368
V++ ++I G + G + A+ LF+ M GIEPDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 1e-05
Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 4/44 (9%)
Query: 306 NTLLDMYSKCGDLDGAIRVFEKMGER----SVVSWTSMIAGYAR 345
NTL+D Y K G ++ A+++F +M +R +V +++ +I G +
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 3e-05
Identities = 57/275 (20%), Positives = 127/275 (46%), Gaps = 31/275 (11%)
Query: 174 SKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRRVKDAHKLFDELSDRDV- 232
+K+G +F +M + G+ A+ +TF ++ A G +V A + + ++V
Sbjct: 483 AKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG---QVAKAFGAYGIMRSKNVK 539
Query: 233 ---VSWNCMISGYIANGVAEKGLEVFKEMLNLGFNV--DLATMVTVLSGCANCG----AL 283
V +N +IS +G ++ +V EM + D T+ ++ CAN G A
Sbjct: 540 PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599
Query: 284 MFGRAVHAFALK---ACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSV----VSW 336
+ +H + +K ++ ++ S+ GD D A+ +++ M ++ V V +
Sbjct: 600 EVYQMIHEYNIKGTPEVYTIAVNS-------CSQKGDWDFALSIYDDMKKKGVKPDEVFF 652
Query: 337 TSMI--AGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYI 394
++++ AG+A G D A + + ++GI+ + +S++ AC+ + ++++ I
Sbjct: 653 SALVDVAGHA--GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDI 710
Query: 395 KENDMQSSLYVSNALMDMYAKCGSMADAESVFNQM 429
K ++ ++ NAL+ + + A V ++M
Sbjct: 711 KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEM 745
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 3e-05
Identities = 55/247 (22%), Positives = 106/247 (42%), Gaps = 40/247 (16%)
Query: 550 MRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTG 609
+++AG++ D + +++ C+ SG VD + F+ M +E + + ++D +R G
Sbjct: 463 VQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV-NAGVEANVHTFGALIDGCARAG 521
Query: 610 NLSEA---YRFIEMMPVAPDATIWGSLLCGCRIHHEVK-----LAEKVAEHVFELEPDNT 661
+++A Y + V PD ++ +L+ C V LAE AE ++PD+
Sbjct: 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAE-THPIDPDHI 580
Query: 662 GYYVLL---ANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIEIKGKVNIFVAGGSSHP 718
L+ AN + ++ +EV ++ + + IKG ++ +S
Sbjct: 581 TVGALMKACANA-GQVDRAKEVYQM--------IHEY------NIKGTPEVYTIAVNSCS 625
Query: 719 HAKKIESLLKRLRLEMKREGYFPKTRYALINADEM--EKEVALCGHSEKLAMAFGILNLP 776
+ L + +MK++G P DE+ V + GH+ L AF IL
Sbjct: 626 QKGDWDFALS-IYDDMKKKGVKP---------DEVFFSALVDVAGHAGDLDKAFEILQDA 675
Query: 777 AGQTIRV 783
Q I++
Sbjct: 676 RKQGIKL 682
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 7e-05
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 334 VSWTSMIAGYAREGVFDGAIRLFRGMVREGI 364
V++ S+I+GY + G + A+ LF+ M +G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 233 VSWNCMISGYIANGVAEKGLEVFKEMLNLGF 263
V++N +ISGY G E+ LE+FKEM G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 4e-04
Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 407 NALMDMYAKCGSMADAESVFNQMPVK----DIVSWNTMIGAL 444
N L+D Y K G + +A +FN+M + ++ +++ +I L
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 6e-04
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 233 VSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVD 266
V++N +I G G E+ LE+FKEM G D
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.002
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 330 ERSVVSWTSMIAGYAREGVFDGAIRLFRGMV 360
+ VV++ ++I G R G D A+ L M
Sbjct: 4 KPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.003
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 164 FIWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADS 198
+N L+ K G +E+L LFK+M+ GI D
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 830 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.93 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.88 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.84 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.81 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.8 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.79 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.78 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.76 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.73 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.72 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.72 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.71 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.69 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.68 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.68 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.66 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.63 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.62 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.61 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.61 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.54 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.52 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.45 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.43 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.38 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.38 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.38 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.36 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.35 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.3 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.29 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.28 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.28 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.25 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.24 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.23 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.22 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.22 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.22 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.22 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.21 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.2 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.19 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.16 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.12 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.11 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.07 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.06 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.04 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.01 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.0 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.0 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.98 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.98 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.97 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.97 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.96 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 98.96 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.95 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.94 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.9 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.89 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.86 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.83 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.82 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.78 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.75 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.66 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.62 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.62 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.61 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.61 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.61 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.57 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.57 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.56 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.53 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.53 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.51 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.5 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.5 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.49 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.48 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.46 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.46 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.44 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.43 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.43 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.42 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.41 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.4 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.38 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.33 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.31 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.31 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.28 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.25 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.24 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.23 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.21 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.2 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.17 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.17 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.15 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.14 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.12 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.11 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.11 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.11 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.1 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.06 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.0 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 97.97 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 97.94 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.94 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.93 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.93 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.92 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 97.91 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.91 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.9 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.88 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.88 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 97.84 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.81 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.79 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.75 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.71 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.7 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.67 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.67 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.65 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.6 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.59 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.59 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.54 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.53 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.48 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.48 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.48 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.44 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.42 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.37 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.36 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 97.35 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.35 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.33 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.32 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.31 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.3 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.29 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.28 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.28 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.26 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.23 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.22 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.16 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.13 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.07 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.03 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.02 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.01 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.0 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 96.99 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 96.98 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.89 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.87 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.85 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.85 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.68 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.67 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.59 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.58 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.52 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.52 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.52 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.46 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.45 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.45 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.44 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.43 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 96.43 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.36 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.35 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.34 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.33 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.28 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 96.26 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.23 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.21 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 96.2 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.19 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.13 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.09 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 95.96 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.76 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 95.75 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.65 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 95.61 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.57 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.45 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.45 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.38 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.38 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 95.36 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.34 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.3 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.24 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.22 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.16 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.04 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.98 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.78 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 94.74 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.74 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 94.52 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.47 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.28 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.25 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.11 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.07 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.06 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.06 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 93.87 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 93.85 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.82 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.8 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 93.68 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.56 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.45 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 93.43 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.42 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.33 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 93.21 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 93.03 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 93.02 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 92.72 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 92.61 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 92.34 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 92.32 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 92.3 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 91.38 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 91.13 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 91.1 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 91.03 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 90.67 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 90.62 | |
| PRK09687 | 280 | putative lyase; Provisional | 90.57 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 89.87 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 89.65 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 89.5 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 89.46 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 89.27 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 88.92 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 88.83 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 88.61 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 88.39 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 88.27 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 88.13 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 88.12 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 88.1 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 87.67 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 87.45 | |
| KOG4279 | 1226 | consensus Serine/threonine protein kinase [Signal | 87.43 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 87.31 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 87.29 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 87.27 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 87.21 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 86.87 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 86.8 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 86.61 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 86.58 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 86.41 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 85.92 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 85.47 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 85.02 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 84.71 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 83.98 | |
| KOG1498 | 439 | consensus 26S proteasome regulatory complex, subun | 83.82 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 83.52 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 83.39 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 82.85 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 82.65 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 82.15 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 82.0 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 81.26 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 80.69 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 80.46 | |
| PRK12798 | 421 | chemotaxis protein; Reviewed | 80.19 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 80.13 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 80.1 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 80.01 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-157 Score=1412.91 Aligned_cols=768 Identities=41% Similarity=0.796 Sum_probs=746.7
Q ss_pred ccCCCCcchhHHHHHHHhcCChHHHHHHHHHhhcCCCCh--hhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCccchH
Q 047408 58 TLVCKTKNYNAEIGRFCEVGNLEKAMEVLYSSEKSKIDT--KTYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLG 135 (830)
Q Consensus 58 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 135 (830)
..+++...+|.+|.+|++.|++++|+.+|++|...|+.| .+|..++++|.+.+.++.|.++|+.+.+.|..++ ..++
T Consensus 46 ~~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~ 124 (857)
T PLN03077 46 SSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLG-VRLG 124 (857)
T ss_pred hcccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCC-chHH
Confidence 345778889999999999999999999999999987555 5999999999999999999999999999999888 9999
Q ss_pred HHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCC
Q 047408 136 SKLVFMFVTCGDLKEGRRVFNKIDNGKVFIWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSR 215 (830)
Q Consensus 136 ~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 215 (830)
|+|+++|+++|+++.|+++|++|++||+++||+||++|++.|++++|+++|++|...|+.||.+||+++|++|+..++..
T Consensus 125 n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~ 204 (857)
T PLN03077 125 NAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLA 204 (857)
T ss_pred HHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999888877776665443321
Q ss_pred --------------------------------CHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 047408 216 --------------------------------RVKDAHKLFDELSDRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGF 263 (830)
Q Consensus 216 --------------------------------~~~~A~~lf~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~ 263 (830)
++++|.++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+
T Consensus 205 ~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~ 284 (857)
T PLN03077 205 RGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSV 284 (857)
T ss_pred hHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 689999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCCCCeehHHHHHHHH
Q 047408 264 NVDLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGY 343 (830)
Q Consensus 264 ~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~ 343 (830)
.||..||++++.+|++.|+++.|+++|..+.+.|+.||+.+||+||++|+++|++++|.++|++|..||+++||+||.+|
T Consensus 285 ~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~ 364 (857)
T PLN03077 285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGY 364 (857)
T ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHH
Q 047408 344 AREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAE 423 (830)
Q Consensus 344 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~ 423 (830)
+++|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.++..++|+||++|+++|++++|.
T Consensus 365 ~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 444 (857)
T PLN03077 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444 (857)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCchhHHHHHH----------HHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCch
Q 047408 424 SVFNQMPVKDIVSWNTMIG----------ALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADR 493 (830)
Q Consensus 424 ~~f~~m~~~~~~~~n~~i~----------al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~ 493 (830)
++|++|.++|+++||+||. |+++|++|....+||.+||+++|.+|++.|+++.|+++|..+++.|+.+|.
T Consensus 445 ~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~ 524 (857)
T PLN03077 445 EVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDG 524 (857)
T ss_pred HHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccc
Confidence 9999999999999999998 999999998645999999999999999999999999999999999999999
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccC
Q 047408 494 NVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSG 573 (830)
Q Consensus 494 ~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g 573 (830)
.++|+||++|+|||++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+.|++||.+||+++|.+|++.|
T Consensus 525 ~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g 603 (857)
T PLN03077 525 FLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSG 603 (857)
T ss_pred eechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcC
Confidence 99999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047408 574 LVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHV 653 (830)
Q Consensus 574 ~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 653 (830)
++++|+++|+.|.+++|+.|+..||+||+++|+|+|+++||++++++||++||..+|++|+++|+.||+.+.|+.+++++
T Consensus 604 ~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l 683 (857)
T PLN03077 604 MVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHI 683 (857)
T ss_pred hHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 99999999999998899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCcCCCChhHHHHHHHHHHHH
Q 047408 654 FELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIEIKGKVNIFVAGGSSHPHAKKIESLLKRLRLE 733 (830)
Q Consensus 654 ~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~~~swi~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~ 733 (830)
++++|++++.|++|+|+|++.|+|++|.++|+.|+++|++|+||+||||++|++|.|.+||++||+.++||.+|++|..+
T Consensus 684 ~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~ 763 (857)
T PLN03077 684 FELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEK 763 (857)
T ss_pred HhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCccCCCCccccccchhhhHHHhhhhHHHHHHHHHhhcCCCCCeEEEEecccccccccchhhhhhccccceEEEecC
Q 047408 734 MKREGYFPKTRYALINADEMEKEVALCGHSEKLAMAFGILNLPAGQTIRVTKNLRVCGDCHEMAKFMSKTARREIVLRDS 813 (830)
Q Consensus 734 ~~~~g~~~~~~~~~~~~~~~~~~~~l~~hse~la~a~~~~~~~~~~~~~~~knlr~c~dch~~~k~~s~~~~r~i~~rd~ 813 (830)
|++.||+||+++++ |++|++||..|++||||||||||||+||||+||||+||||||+|||+++||||||++|||||||+
T Consensus 764 ~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~ 842 (857)
T PLN03077 764 MKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDT 842 (857)
T ss_pred HHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecC
Confidence 99999999999988 55889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccCccccCCC
Q 047408 814 NRFHHFKDGRCSCRG 828 (830)
Q Consensus 814 ~rfh~f~~g~csc~d 828 (830)
+|||||+||+|||||
T Consensus 843 ~rfh~f~~g~csc~d 857 (857)
T PLN03077 843 EQFHHFKDGECSCGD 857 (857)
T ss_pred CcceeCCCCcccCCC
Confidence 999999999999998
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-133 Score=1180.12 Aligned_cols=602 Identities=36% Similarity=0.663 Sum_probs=595.2
Q ss_pred CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHH
Q 047408 229 DRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLG-FNVDLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNT 307 (830)
Q Consensus 229 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~ 307 (830)
.++.++|+++|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.++++|..+++.|+.||+.++|+
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3577899999999999999999999999999864 789999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCChHHHHHHHhhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhh
Q 047408 308 LLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIG 387 (830)
Q Consensus 308 Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a 387 (830)
|+++|+++|++++|.++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|.++.|
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHH----------HHHHHHHHHhCC-CC
Q 047408 388 KDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIG----------ALDLFVAMLQNF-EP 456 (830)
Q Consensus 388 ~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~----------al~~f~~m~~~~-~p 456 (830)
+++|..+.+.|+.+|..++|+||++|+++|++++|.++|++|+.+|+++||+||. |+++|++|...| .|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999999999999999999998 999999999999 99
Q ss_pred CccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHh
Q 047408 457 DGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGM 536 (830)
Q Consensus 457 d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~ 536 (830)
|.+||++++.+|++.|.+++|+++|..+.+.|+++|..++|+||++|+|+|++++|.++|++|.++|+++||+||.+|++
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHH
Q 047408 537 HGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYR 616 (830)
Q Consensus 537 ~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~ 616 (830)
+|++++|+++|++|.+.|+.||.+||++++++|++.|++++|.++|+.|.+++|+.|+..||++||++|+|+|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCcCCC
Q 047408 617 FIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNP 696 (830)
Q Consensus 617 ~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~ 696 (830)
+|++|+++||..+|++|+.+|+.+|+++.|+.+++++++++|++...|+.|+++|++.|+|++|.++++.|+++|++|.|
T Consensus 484 ~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~ 563 (697)
T PLN03081 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP 563 (697)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEECCEEEEEEeCCcCCCChhHHHHHHHHHHHHHHHcCccCCCCccccccchhhhHHHhhhhHHHHHHHHHhhcCC
Q 047408 697 GCSWIEIKGKVNIFVAGGSSHPHAKKIESLLKRLRLEMKREGYFPKTRYALINADEMEKEVALCGHSEKLAMAFGILNLP 776 (830)
Q Consensus 697 ~~swi~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~hse~la~a~~~~~~~ 776 (830)
|+|||++++++|.|.+||.+||+.++||.+|++|..+|++.||+||+.+++||+++++||..|++||||||||||||+||
T Consensus 564 g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~ 643 (697)
T PLN03081 564 ACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTS 643 (697)
T ss_pred CeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEecccccccccchhhhhhccccceEEEecCCccccccCccccCCCCC
Q 047408 777 AGQTIRVTKNLRVCGDCHEMAKFMSKTARREIVLRDSNRFHHFKDGRCSCRGFW 830 (830)
Q Consensus 777 ~~~~~~~~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 830 (830)
||+||||+||||||+|||+++||||+++||||||||++|||||+||+|||||||
T Consensus 644 ~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 644 EWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 999999999999999999999999999999999999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-82 Score=766.35 Aligned_cols=613 Identities=27% Similarity=0.444 Sum_probs=526.4
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHhcCCC----CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHH
Q 047408 132 GVLGSKLVFMFVTCGDLKEGRRVFNKIDN----GKVFIWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKC 207 (830)
Q Consensus 132 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 207 (830)
...+|.++..|++.|++++|..+|+.|.. ++..+|+.++.++.+.+.++.|..++..+.+.|..++...++++|.+
T Consensus 51 ~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~ 130 (857)
T PLN03077 51 THDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSM 130 (857)
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHH
Confidence 44455555555555556666555555543 45677888889999999999999999999999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHH
Q 047408 208 LAVVGNSRRVKDAHKLFDELSDRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGR 287 (830)
Q Consensus 208 ~~~~g~~~~~~~A~~lf~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~ 287 (830)
|++.| +++.|+++|++|++||+++||+||.+|++.|++++|+++|++|...|+.||.+||++++++|+..+++..++
T Consensus 131 ~~~~g---~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~ 207 (857)
T PLN03077 131 FVRFG---ELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR 207 (857)
T ss_pred HHhCC---ChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHH
Confidence 99999 599999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 047408 288 AVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPD 367 (830)
Q Consensus 288 ~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 367 (830)
++|..+++.|+.+|+.++|+||++|+++|++++|.++|++|+.||+++||+||.+|++.|++++|+++|++|.+.|+.||
T Consensus 208 ~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd 287 (857)
T PLN03077 208 EVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPD 287 (857)
T ss_pred HHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHH-----
Q 047408 368 VYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIG----- 442 (830)
Q Consensus 368 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~----- 442 (830)
.+||++++.+|++.|+++.|+++|..+.+.|+.||..+||+||++|+++|++++|.++|++|..+|+++||+||.
T Consensus 288 ~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~ 367 (857)
T PLN03077 288 LMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKN 367 (857)
T ss_pred hhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -----HHHHHHHHHhCC-CCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHh
Q 047408 443 -----ALDLFVAMLQNF-EPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLF 516 (830)
Q Consensus 443 -----al~~f~~m~~~~-~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f 516 (830)
|+++|++|...| .||..||++++.+|++.|+++.|.++|+.+.+.|+.++..++|+||++|+|+|++++|.++|
T Consensus 368 g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf 447 (857)
T PLN03077 368 GLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVF 447 (857)
T ss_pred CCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcc
Q 047408 517 DMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLE 596 (830)
Q Consensus 517 ~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 596 (830)
++|.++|+++||+||.+|+++|+.++|+++|++|.. +++||.+||+++|.+|++.|.+++|.+++..|.+ .|+.|+..
T Consensus 448 ~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~-~g~~~~~~ 525 (857)
T PLN03077 448 HNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLR-TGIGFDGF 525 (857)
T ss_pred HhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH-hCCCccce
Confidence 999999999999999999999999999999999986 6999999999999999999999999999999875 48888877
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCCCCcchHHHHHHHHhhh
Q 047408 597 HYACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFE--LEPDNTGYYVLLANVYAEA 674 (830)
Q Consensus 597 ~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--l~p~~~~~~~~l~~~y~~~ 674 (830)
++++|+++|+++|++++|.++|+++ +||..+|++++.+|..+|+.++|..+++++.+ +.|+ ..+|..+...|.+.
T Consensus 526 ~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~ 602 (857)
T PLN03077 526 LPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRS 602 (857)
T ss_pred echHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhc
Confidence 7777777777777777777777666 56666666666666666666666666666654 3344 33444455555555
Q ss_pred cCHHHHHHHHHHHH-hCCCcCCCc-------------------------------eeEEEECCE--EEEEE-----eC--
Q 047408 675 EKWEEVKKLREKIS-RRGLKKNPG-------------------------------CSWIEIKGK--VNIFV-----AG-- 713 (830)
Q Consensus 675 g~~~~A~~~~~~m~-~~g~~~~~~-------------------------------~swi~~~~~--~~~f~-----~~-- 713 (830)
|++++|.++++.|+ +.|+.|+.. ..|..+-+. .|.-. +.
T Consensus 603 g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~ 682 (857)
T PLN03077 603 GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQH 682 (857)
T ss_pred ChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 55555555555555 344444321 123211000 01000 00
Q ss_pred -CcCCCChhHHHHHH-------------HHHHHHHHHcCccCCCCccccccch
Q 047408 714 -GSSHPHAKKIESLL-------------KRLRLEMKREGYFPKTRYALINADE 752 (830)
Q Consensus 714 -~~~~p~~~~i~~~l-------------~~l~~~~~~~g~~~~~~~~~~~~~~ 752 (830)
-...|+....|..| .++++.|++.|..++++++|.++..
T Consensus 683 l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~ 735 (857)
T PLN03077 683 IFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKG 735 (857)
T ss_pred HHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECC
Confidence 12456655555555 4688999999999999999877653
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-68 Score=626.92 Aligned_cols=531 Identities=17% Similarity=0.242 Sum_probs=480.5
Q ss_pred HHHHHHHHHhhcCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCccchHHHHHHHHHhCCChHHHHHHHhcCC
Q 047408 80 EKAMEVLYSSEKSKIDTKTYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNKID 159 (830)
Q Consensus 80 ~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~ 159 (830)
..++...+.......+...|..++..|++.|++++|.++++.|.+.|+.+.+...++.++..|.+.|.+++|.++|+.|+
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~ 433 (1060)
T PLN03218 354 ENSLAAYNGGVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR 433 (1060)
T ss_pred hhhHHHhccccCCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 33444444444333344588889999999999999999999999999776658888999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHhhCC----CCCcchH
Q 047408 160 NGKVFIWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRRVKDAHKLFDELS----DRDVVSW 235 (830)
Q Consensus 160 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~A~~lf~~m~----~~~~~~~ 235 (830)
.||..+||.||.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.| ++++|.++|++|. .||.++|
T Consensus 434 ~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G---~vd~A~~vf~eM~~~Gv~PdvvTy 510 (1060)
T PLN03218 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSG---KVDAMFEVFHEMVNAGVEANVHTF 510 (1060)
T ss_pred CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCc---CHHHHHHHHHHHHHcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999 5999999999998 5899999
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHH--hCCCCCchHHHHHHHHhh
Q 047408 236 NCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALK--ACFSKEISFNNTLLDMYS 313 (830)
Q Consensus 236 n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~--~g~~~~~~~~~~Li~~y~ 313 (830)
|+||.+|++.|++++|+++|++|...|+.||..||+.+|.+|++.|+++.|.+++..|.+ .|+.||..+|++||++|+
T Consensus 511 naLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~ 590 (1060)
T PLN03218 511 GALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACA 590 (1060)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999986 688999999999999999
Q ss_pred cCCChHHHHHHHhhcCC----CCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhh
Q 047408 314 KCGDLDGAIRVFEKMGE----RSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKD 389 (830)
Q Consensus 314 k~g~~~~A~~~f~~m~~----~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~ 389 (830)
++|++++|.++|+.|.+ |+.++||++|.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|++++|.+
T Consensus 591 k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~ 670 (1060)
T PLN03218 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFE 670 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999999999976 56799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCC----CCCchhHHHHHH----------HHHHHHHHHhCC-
Q 047408 390 VHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMP----VKDIVSWNTMIG----------ALDLFVAMLQNF- 454 (830)
Q Consensus 390 ~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~----~~~~~~~n~~i~----------al~~f~~m~~~~- 454 (830)
+|..|.+.|+.||..+|++||++|+++|++++|.++|++|. .+|+++||+||. |+++|++|...|
T Consensus 671 l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi 750 (1060)
T PLN03218 671 ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGL 750 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999994 689999999998 999999999999
Q ss_pred CCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHH----HHhcCCHHHHHHHhhhCCCCChhhHHHH
Q 047408 455 EPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDM----YVKCGVLVLARSLFDMIPAKDLISWTIM 530 (830)
Q Consensus 455 ~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~----y~k~g~~~~A~~~f~~m~~~d~~~~~~l 530 (830)
.||..||++++.+|++.|+++.|.++|.+|.+.|+.||..+|++|+++ |.++++..++...|+.+...+...|+
T Consensus 751 ~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~-- 828 (1060)
T PLN03218 751 CPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT-- 828 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchH--
Confidence 999999999999999999999999999999999999999999999987 45566666666666655555555665
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCC
Q 047408 531 IAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGN 610 (830)
Q Consensus 531 i~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~ 610 (830)
++|+.+|++|++.|+.||.+||+.+|.++...+..+.+..+++.|... +..|+..+|+++|+.+++.
T Consensus 829 ----------~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~-- 895 (1060)
T PLN03218 829 ----------SWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY-- 895 (1060)
T ss_pred ----------HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--
Confidence 469999999999999999999999997777778888777777776533 6667788999999998543
Q ss_pred HHHHHHHHHhC---CCCCCHH
Q 047408 611 LSEAYRFIEMM---PVAPDAT 628 (830)
Q Consensus 611 ~~eA~~~~~~m---~~~p~~~ 628 (830)
.++|..++++| ++.|+..
T Consensus 896 ~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 896 DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hHHHHHHHHHHHHcCCCCCcc
Confidence 47899999998 6677654
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-67 Score=619.25 Aligned_cols=576 Identities=17% Similarity=0.258 Sum_probs=505.9
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCCcccHHHHHHHHHhcCCCCCHHHHHHHHhhCCCCCcchHHHHH
Q 047408 161 GKVFIWNLLMHEYSKTGNFKESLYLFKKMQSLGI-AADSYTFSCVLKCLAVVGNSRRVKDAHKLFDELSDRDVVSWNCMI 239 (830)
Q Consensus 161 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~g~~~~~~~A~~lf~~m~~~~~~~~n~li 239 (830)
++...|..++..+++.|++++|+++|++|.+.|+ .++..+++.++.+|.+.| .+++|.++|+.|+.||..+||.||
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g---~~~eAl~lf~~M~~pd~~Tyn~LL 444 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQR---AVKEAFRFAKLIRNPTLSTFNMLM 444 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4677899999999999999999999999999995 578888899999999988 699999999999999999999999
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChH
Q 047408 240 SGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLD 319 (830)
Q Consensus 240 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~ 319 (830)
.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|+++.+.+++..|.+.|+.||..+||+||++|++.|+++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCC----CCeehHHHHHHHHHhcCChhHHHHHHHHHHH--cCCCCCcchHHHHHHHhhccCcchhhhhHHHH
Q 047408 320 GAIRVFEKMGE----RSVVSWTSMIAGYAREGVFDGAIRLFRGMVR--EGIEPDVYAITSILHACACDGLLEIGKDVHDY 393 (830)
Q Consensus 320 ~A~~~f~~m~~----~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~--~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~ 393 (830)
+|.++|+.|.. ||.++||+||.+|++.|++++|.++|.+|.. .|+.||.+||++++.+|++.|++++|.++|+.
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999964 8999999999999999999999999999986 68999999999999999999999999999999
Q ss_pred HHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhh
Q 047408 394 IKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAA 473 (830)
Q Consensus 394 ~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~ 473 (830)
|.+.|+.|+..+||+||++|++.|++++|.++|++|...++ .||.+||++++.+|++.|+
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv--------------------~PD~~TynsLI~a~~k~G~ 664 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGV--------------------KPDEVFFSALVDVAGHAGD 664 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--------------------CCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999988877655 7999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC----CCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 047408 474 LERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP----AKDLISWTIMIAGYGMHGFGCDAIATFND 549 (830)
Q Consensus 474 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~----~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 549 (830)
+++|.++|..|.+.|+.||..+|++||++|+++|++++|.++|++|. .||+++||+||.+|++.|+.++|+++|++
T Consensus 665 ~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~e 744 (1060)
T PLN03218 665 LDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSE 744 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999994 78999999999999999999999999999
Q ss_pred HHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHH----hcC----------------
Q 047408 550 MRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLS----RTG---------------- 609 (830)
Q Consensus 550 m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~----r~g---------------- 609 (830)
|.+.|+.||.+||+.++.+|.+.|++++|.++|+.|.+. |+.|+..+|++|++++. +++
T Consensus 745 M~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~ 823 (1060)
T PLN03218 745 MKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQI 823 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccccc
Confidence 999999999999999999999999999999999999855 99999999999998743 333
Q ss_pred ---CHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh-ccCCCCcchHHHHHHHHhhhcCH-HHHH
Q 047408 610 ---NLSEAYRFIEMM---PVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVF-ELEPDNTGYYVLLANVYAEAEKW-EEVK 681 (830)
Q Consensus 610 ---~~~eA~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~l~p~~~~~~~~l~~~y~~~g~~-~~A~ 681 (830)
..++|..+|++| ++.||..+|++++.++...+..+.+..+++.+. +-.+.+..+|..|.+.+ |++ ++|.
T Consensus 824 ~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A~ 900 (1060)
T PLN03218 824 ENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAF 900 (1060)
T ss_pred ccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHHH
Confidence 347899999999 789999999999987778888998888887654 33455677899998877 443 5899
Q ss_pred HHHHHHHhCCCcCCCce--e-EEEECCEEEEEEeCCcCCCChhH--HHHHHHHHHHHHHHcCccCCCCccccccchhhhH
Q 047408 682 KLREKISRRGLKKNPGC--S-WIEIKGKVNIFVAGGSSHPHAKK--IESLLKRLRLEMKREGYFPKTRYALINADEMEKE 756 (830)
Q Consensus 682 ~~~~~m~~~g~~~~~~~--s-wi~~~~~~~~f~~~~~~~p~~~~--i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~ 756 (830)
.++++|...|+.|+... + |.- .+|.| -+...+ +...|..|+..+...-..|.....+++ ++.++.
T Consensus 901 ~l~~em~~~Gi~p~~~~~~~~~~~---d~~~~------~~~aa~~~l~~wl~~~~~~~~~g~~lp~~~~~~~~-~~~~~~ 970 (1060)
T PLN03218 901 SLLEEAASLGVVPSVSFKKSPIVI---DAEEL------PVFAAEVYLLTILKGLKHRLAAGAKLPNVTILLPT-EKKEIY 970 (1060)
T ss_pred HHHHHHHHcCCCCCcccccCceEE---EcccC------cchhHHHHHHHHHHHHHHHHhccCcCCcceeeecc-ccceee
Confidence 99999999999987641 1 321 11222 222333 344556666665443356776665665 443322
Q ss_pred HHhhhhH----HHHHHHHHhh
Q 047408 757 VALCGHS----EKLAMAFGIL 773 (830)
Q Consensus 757 ~~l~~hs----e~la~a~~~~ 773 (830)
..-..|+ -+||-+|+-+
T Consensus 971 ~~~g~~~~~~~~~~~~~~~~~ 991 (1060)
T PLN03218 971 TPKGEKTINLAGRVGQAVAAL 991 (1060)
T ss_pred ccCCchhHHHHHHHHHHHHHH
Confidence 2222233 3477777654
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-67 Score=615.86 Aligned_cols=461 Identities=26% Similarity=0.461 Sum_probs=385.5
Q ss_pred CCCcchhHHHHHHHhcCChHHHHHHHHHhhcCC---CChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCccchHHH
Q 047408 61 CKTKNYNAEIGRFCEVGNLEKAMEVLYSSEKSK---IDTKTYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLGSK 137 (830)
Q Consensus 61 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~ 137 (830)
.+..+|+.+|.++.+.|++++|+++|+.|...+ |++.+|+.++.+|++.++++.|.++|..+.+.|+.|+ ..++|.
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~-~~~~n~ 163 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPD-QYMMNR 163 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcc-hHHHHH
Confidence 355689999999999999999999998887643 3446888888888888888888888888888888777 777777
Q ss_pred HHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCH
Q 047408 138 LVFMFVTCGDLKEGRRVFNKIDNGKVFIWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRRV 217 (830)
Q Consensus 138 li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~ 217 (830)
|+++|+++|++++|+++|++|+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~---------------------------------------------------------- 185 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMP---------------------------------------------------------- 185 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCC----------------------------------------------------------
Confidence 7777777776665555555554
Q ss_pred HHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhC
Q 047408 218 KDAHKLFDELSDRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKAC 297 (830)
Q Consensus 218 ~~A~~lf~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g 297 (830)
+||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.|+++|..+.+.|
T Consensus 186 -----------~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g 254 (697)
T PLN03081 186 -----------ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTG 254 (697)
T ss_pred -----------CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhC
Confidence 445566666677777777888899999999999999999999999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHhhcCCChHHHHHHHhhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHH
Q 047408 298 FSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHA 377 (830)
Q Consensus 298 ~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 377 (830)
+.+|..++|+||++|+++|++++|.++|++|+++|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||++++.+
T Consensus 255 ~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a 334 (697)
T PLN03081 255 VVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRI 334 (697)
T ss_pred CCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCC
Q 047408 378 CACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPD 457 (830)
Q Consensus 378 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd 457 (830)
|++.|+++.|+++|..|.+.|+.+|..++|+||++|+|+|++++|.++|++|.++|+++||+||
T Consensus 335 ~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI---------------- 398 (697)
T PLN03081 335 FSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALI---------------- 398 (697)
T ss_pred HHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHH----------------
Confidence 9999999999999999999999999999999999999999999999999999887776666655
Q ss_pred ccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC-----CCChhhHHHHHH
Q 047408 458 GVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP-----AKDLISWTIMIA 532 (830)
Q Consensus 458 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~-----~~d~~~~~~li~ 532 (830)
.+|++.|+.++|.+++..|.+.|+.||..+|++++.+|++.|.+++|.++|+.|. .|+..+|++||.
T Consensus 399 --------~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~ 470 (697)
T PLN03081 399 --------AGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIE 470 (697)
T ss_pred --------HHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHH
Confidence 5666777777777777777777777777777777777777777777777777664 356667777777
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCH
Q 047408 533 GYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNL 611 (830)
Q Consensus 533 ~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~ 611 (830)
+|++.|+.++|.++|++| ++.||..+|++|+.+|...|+++.|..+++.+. ++.|+ ..+|..|+++|++.|++
T Consensus 471 ~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~---~~~p~~~~~y~~L~~~y~~~G~~ 544 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLY---GMGPEKLNNYVVLLNLYNSSGRQ 544 (697)
T ss_pred HHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh---CCCCCCCcchHHHHHHHHhCCCH
Confidence 777777777777776665 467777777777777777777777777777664 56664 56777777777777777
Q ss_pred HHHHHHHHhC
Q 047408 612 SEAYRFIEMM 621 (830)
Q Consensus 612 ~eA~~~~~~m 621 (830)
++|.++++.|
T Consensus 545 ~~A~~v~~~m 554 (697)
T PLN03081 545 AEAAKVVETL 554 (697)
T ss_pred HHHHHHHHHH
Confidence 7777777777
|
|
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-40 Score=285.48 Aligned_cols=106 Identities=62% Similarity=1.071 Sum_probs=99.3
Q ss_pred ceeEEEECCEEEEEEeCCcCCCChhHHHHHHHHHHHHHHHcCccCCCCccccccchhhh--------HHHhhhhHHHHHH
Q 047408 697 GCSWIEIKGKVNIFVAGGSSHPHAKKIESLLKRLRLEMKREGYFPKTRYALINADEMEK--------EVALCGHSEKLAM 768 (830)
Q Consensus 697 ~~swi~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~--------~~~l~~hse~la~ 768 (830)
||||+++ |.|++||.+||+. ++..+++..||.|++..+.||++++++ +..+++||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 7999988 9999999999998 455677889999999999999988776 6799999999999
Q ss_pred HHHhhcCCCCCeEEEEecc-cccccccchhhhhhccccceEEEecCCcccccc
Q 047408 769 AFGILNLPAGQTIRVTKNL-RVCGDCHEMAKFMSKTARREIVLRDSNRFHHFK 820 (830)
Q Consensus 769 a~~~~~~~~~~~~~~~knl-r~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~ 820 (830)
|||||++ ||+||+ |||+|||+|+|+||+++||+|||||++||||||
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999999 999999 999999999999999999999999999999997
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-32 Score=331.50 Aligned_cols=616 Identities=13% Similarity=0.057 Sum_probs=296.8
Q ss_pred CCCCcchhHHHHHHHhcCChHHHHHHHHHhhcCCCChh-hHHHHHHHHhccCChhHHHHHHHHHHHhCCC----------
Q 047408 60 VCKTKNYNAEIGRFCEVGNLEKAMEVLYSSEKSKIDTK-TYCSILQLCADLKSLEDGKKVHSIICESGIV---------- 128 (830)
Q Consensus 60 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~---------- 128 (830)
|.+...|..++..+...|++++|...++.+....|+.. ........+...|+++.|...+..+.+.+..
T Consensus 224 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~ 303 (899)
T TIGR02917 224 PNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGA 303 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 34555666666666666666666666666655444321 1111122223344555555555544443211
Q ss_pred ----------------------CCccchHHHHHHHHHhCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHH
Q 047408 129 ----------------------IDDGVLGSKLVFMFVTCGDLKEGRRVFNKIDN---GKVFIWNLLMHEYSKTGNFKESL 183 (830)
Q Consensus 129 ----------------------~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~ 183 (830)
|++......+...+.+.|++++|...++.+.. .+...|+.+...+.+.|++++|.
T Consensus 304 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 383 (899)
T TIGR02917 304 SEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAA 383 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 22233344444444445555555544444321 12334444445555555555555
Q ss_pred HHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHH
Q 047408 184 YLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRRVKDAHKLFDELSD---RDVVSWNCMISGYIANGVAEKGLEVFKEMLN 260 (830)
Q Consensus 184 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~A~~lf~~m~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~ 260 (830)
++|+++.+.. +.+...+..+...+...| +.++|.+.|+.... .+...+..++..|.+.|++++|++++.++..
T Consensus 384 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 459 (899)
T TIGR02917 384 EYLAKATELD-PENAAARTQLGISKLSQG---DPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEK 459 (899)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHhCC---ChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5555444321 112223333333333444 24444444443321 1223344444555555555555555555543
Q ss_pred CCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCC---CCeehHH
Q 047408 261 LGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGE---RSVVSWT 337 (830)
Q Consensus 261 ~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~ 337 (830)
. .+++..++..+...+...|+.+.+.+.+..+++.. +.+...+..+...|.+.|++++|.+.|+.+.. .+..+++
T Consensus 460 ~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 537 (899)
T TIGR02917 460 K-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAIL 537 (899)
T ss_pred h-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHH
Confidence 2 22334445555555555555555555555554432 22333444455555555555555555555432 2344455
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcC
Q 047408 338 SMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCG 417 (830)
Q Consensus 338 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g 417 (830)
.+...+.+.|+.++|...|+++...+ +.+...+..+...+...|++++|.+++..+.+.. +.+..++..+...|.+.|
T Consensus 538 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 615 (899)
T TIGR02917 538 ALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAG 615 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 55555555555555555555554432 2233344444555555555555555555554432 334445555555555555
Q ss_pred ChHHHHHHHhcCCCC---CchhHHHHHH----------HHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHH
Q 047408 418 SMADAESVFNQMPVK---DIVSWNTMIG----------ALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYI 484 (830)
Q Consensus 418 ~~~~A~~~f~~m~~~---~~~~~n~~i~----------al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~ 484 (830)
++++|...|+.+.+. +...|..+.. |+..|.++....+.+..++..+...+...|++++|.+++..+
T Consensus 616 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 695 (899)
T TIGR02917 616 DLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSL 695 (899)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555555544321 2222332222 445555544433334444455555555555555555555555
Q ss_pred HHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHH
Q 047408 485 LRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP--AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSF 562 (830)
Q Consensus 485 ~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~ 562 (830)
.+.+ +.+...+..+...|.+.|++++|.+.|+.+. .|+..++..++..+.+.|++++|.+.++++.+. .+.+...+
T Consensus 696 ~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~ 773 (899)
T TIGR02917 696 QKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLR 773 (899)
T ss_pred HhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHH
Confidence 4443 3344444555555555555555555555443 233344444555555555555555555555543 12223344
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 047408 563 ISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIH 640 (830)
Q Consensus 563 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~ 640 (830)
..+...|...|+.++|.++|+.+... -+++...+..+..++.+.|+ ++|++.++++ ...| +..+|..+...+...
T Consensus 774 ~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 850 (899)
T TIGR02917 774 TALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEK 850 (899)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 44445555555555555555555422 11234445555555555555 5555555544 2223 234455555555555
Q ss_pred CCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 641 HEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 641 g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
|++++|...++++++.+|.++.++..++.+|.+.|++++|.+++++|.
T Consensus 851 g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 851 GEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 555555555555555555555555555555555555555555555543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=328.27 Aligned_cols=629 Identities=13% Similarity=0.075 Sum_probs=380.6
Q ss_pred CCCcchhhhhhhc----cCCCCcchhHHHHHHHhcCChHHHHHHHHHhhcCCCCh-hhHHHHHHHHhccCChhHHHHHHH
Q 047408 46 CTINPISASISKT----LVCKTKNYNAEIGRFCEVGNLEKAMEVLYSSEKSKIDT-KTYCSILQLCADLKSLEDGKKVHS 120 (830)
Q Consensus 46 ~~~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~ 120 (830)
.+....+...++. .|++...|..+...+...|++++|...|++.....|.. ..+..+...+...|+++.|...++
T Consensus 172 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~ 251 (899)
T TIGR02917 172 ENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHAD 251 (899)
T ss_pred CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3455556555443 35677788888899999999999999999998877654 477778888889999999999999
Q ss_pred HHHHhCCCCCccchHHHHHHHHHhCCChHHHHHHHhcCCCCC---cchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 047408 121 IICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNKIDNGK---VFIWNLLMHEYSKTGNFKESLYLFKKMQSLGIAAD 197 (830)
Q Consensus 121 ~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 197 (830)
.+.+... ++..........+...|++++|...|+.+.+.+ ...+..+...+.+.|++++|...|+++.+.. +.+
T Consensus 252 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~ 328 (899)
T TIGR02917 252 ALLKKAP--NSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNS 328 (899)
T ss_pred HHHHhCC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 9988653 324444444455667788888888887764322 2233444556667777777777777766542 223
Q ss_pred cccHHHHHHHHHhcCCCCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-ChhhHHHH
Q 047408 198 SYTFSCVLKCLAVVGNSRRVKDAHKLFDELSD---RDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNV-DLATMVTV 273 (830)
Q Consensus 198 ~~t~~~ll~~~~~~g~~~~~~~A~~lf~~m~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~l 273 (830)
...+..+...+...| +.++|...++.+.. .+...|+.+...|.+.|++++|.+.|+++.+. .| +...+..+
T Consensus 329 ~~~~~~la~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l 403 (899)
T TIGR02917 329 HQARRLLASIQLRLG---RVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATEL--DPENAAARTQL 403 (899)
T ss_pred hHHHHHHHHHHHHCC---CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHH
Confidence 344455555566666 46666666665532 34556666667777777777777777766553 23 23344444
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCC---CCeehHHHHHHHHHhcCChh
Q 047408 274 LSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGE---RSVVSWTSMIAGYAREGVFD 350 (830)
Q Consensus 274 l~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~ 350 (830)
...+...|+.+.+...+..+.+.... .......++..|.+.|+.++|.++++.+.. .+...|+.+...|...|+++
T Consensus 404 ~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 482 (899)
T TIGR02917 404 GISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLA 482 (899)
T ss_pred HHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHH
Confidence 44555566666666665555544321 122233344445555555555555544432 23334444555555555555
Q ss_pred HHHHHHHHHHHcC---------------------------------CCCCcchHHHHHHHhhccCcchhhhhHHHHHHhh
Q 047408 351 GAIRLFRGMVREG---------------------------------IEPDVYAITSILHACACDGLLEIGKDVHDYIKEN 397 (830)
Q Consensus 351 ~A~~l~~~m~~~g---------------------------------~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 397 (830)
+|...|+++.+.. .+.+..++..+...+...|+.++|..++..+.+.
T Consensus 483 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 562 (899)
T TIGR02917 483 KAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL 562 (899)
T ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5555555444321 1122333444444444445555555555444443
Q ss_pred cCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCC---CCchhHHHHHH----------HHHHHHHHHhCCCCCccccccc
Q 047408 398 DMQSSLYVSNALMDMYAKCGSMADAESVFNQMPV---KDIVSWNTMIG----------ALDLFVAMLQNFEPDGVTMACI 464 (830)
Q Consensus 398 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~~~~~~n~~i~----------al~~f~~m~~~~~pd~~t~~~l 464 (830)
+ +.+...+..++..|.+.|++++|..+++.+.. .+...|..+.. |++.|.++....+.+...+..+
T Consensus 563 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 641 (899)
T TIGR02917 563 N-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLL 641 (899)
T ss_pred C-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 3 23334444455555555555555555554432 12333433332 5555555554433344445555
Q ss_pred hhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHhcCChH
Q 047408 465 LPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPA---KDLISWTIMIAGYGMHGFGC 541 (830)
Q Consensus 465 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~ 541 (830)
..++...|+.++|..++..+.+.. +.+...+..++..|.+.|++++|.++++.+.. .+...|..+...|...|+++
T Consensus 642 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 720 (899)
T TIGR02917 642 ADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYP 720 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHH
Confidence 555555566666666666555533 33455556666666666666666666665542 24455666666666777777
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 047408 542 DAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM 621 (830)
Q Consensus 542 ~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m 621 (830)
+|++.|+++... .|+..++..+..++.+.|++++|.+.++.+... .+.+...+..+...|.+.|++++|.+.|+++
T Consensus 721 ~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 796 (899)
T TIGR02917 721 AAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTV 796 (899)
T ss_pred HHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 777777777663 455556666667777777777777777776643 2234566777777777778888888777776
Q ss_pred -CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhC
Q 047408 622 -PVA-PDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRR 690 (830)
Q Consensus 622 -~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 690 (830)
... +++.+++.+...+...|+ ++|+..+++++++.|+++..+..++.+|...|++++|.+.++++.+.
T Consensus 797 ~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 866 (899)
T TIGR02917 797 VKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNI 866 (899)
T ss_pred HHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 223 356777777777777777 66888888888888888777778888888888888888888777653
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-22 Score=248.26 Aligned_cols=596 Identities=11% Similarity=0.039 Sum_probs=408.9
Q ss_pred CCCCcchhHHHHHHHhcCChHHHHHHHHHhhcCCCChhhH-----------------HHHHHHHhccCChhHHHHHHHHH
Q 047408 60 VCKTKNYNAEIGRFCEVGNLEKAMEVLYSSEKSKIDTKTY-----------------CSILQLCADLKSLEDGKKVHSII 122 (830)
Q Consensus 60 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-----------------~~ll~~~~~~~~~~~a~~~~~~~ 122 (830)
|.++..+..++..+.+.|+.++|...+++..+..|+...+ ..+.+.+...|++++|.+.+..+
T Consensus 59 p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~ 138 (1157)
T PRK11447 59 PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKL 138 (1157)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 5577778888888899999999999999988877755322 22234567789999999999988
Q ss_pred HHhCCCCCccch-HHHHHHHHHhCCChHHHHHHHhcCCCC---CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCC---
Q 047408 123 CESGIVIDDGVL-GSKLVFMFVTCGDLKEGRRVFNKIDNG---KVFIWNLLMHEYSKTGNFKESLYLFKKMQSLGIA--- 195 (830)
Q Consensus 123 ~~~g~~~~~~~~-~~~li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--- 195 (830)
.+.. |++..+ ...+.......|+.++|++.|+++... +...+..+...+...|+.++|+..|+++......
T Consensus 139 l~~~--p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~ 216 (1157)
T PRK11447 139 FNGA--PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDA 216 (1157)
T ss_pred ccCC--CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHH
Confidence 8754 221221 111222223458899999999887643 4557888888899999999999999988653210
Q ss_pred -------------CCcccHHHHHHHHHhcCCCCCHHHHHHHHhhCC----CCCcchHHHHHHHHHhCCChhHHHHHHHHH
Q 047408 196 -------------ADSYTFSCVLKCLAVVGNSRRVKDAHKLFDELS----DRDVVSWNCMISGYIANGVAEKGLEVFKEM 258 (830)
Q Consensus 196 -------------p~~~t~~~ll~~~~~~g~~~~~~~A~~lf~~m~----~~~~~~~n~li~~~~~~g~~~~A~~l~~~m 258 (830)
++......+-.......+...+..|...+++.. .|+.. ...+...+...|++++|+..|++.
T Consensus 217 aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~a 295 (1157)
T PRK11447 217 AAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQA 295 (1157)
T ss_pred HHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 000000011111111111112344555554432 12211 123345667788888888888888
Q ss_pred HHCCCCC-ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCc-hHH------------HHHHHHhhcCCChHHHHHH
Q 047408 259 LNLGFNV-DLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEI-SFN------------NTLLDMYSKCGDLDGAIRV 324 (830)
Q Consensus 259 ~~~g~~p-d~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~-~~~------------~~Li~~y~k~g~~~~A~~~ 324 (830)
++. .| +...+..+-.++.+.|+.++|...+..+++....... ..+ ..+...+.+.|++++|.+.
T Consensus 296 L~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~ 373 (1157)
T PRK11447 296 VRA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERL 373 (1157)
T ss_pred HHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHH
Confidence 764 34 5566677777778888888888888888776443221 111 1223456778888888888
Q ss_pred HhhcCC---CCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc-chHHHHHHHhhccCcchhhhhHHHHHHhhcC-
Q 047408 325 FEKMGE---RSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDV-YAITSILHACACDGLLEIGKDVHDYIKENDM- 399 (830)
Q Consensus 325 f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~- 399 (830)
|++... .+...+..+...|.+.|++++|++.|++..+. .|+. ..+..+...+ ..++.++|..++..+....-
T Consensus 374 ~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~-~~~~~~~A~~~l~~l~~~~~~ 450 (1157)
T PRK11447 374 YQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLY-RQQSPEKALAFIASLSASQRR 450 (1157)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH-HhcCHHHHHHHHHhCCHHHHH
Confidence 887754 24556777778888888888888888888764 3443 3344444444 33456777766655432210
Q ss_pred -------CCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchh
Q 047408 400 -------QSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLA 472 (830)
Q Consensus 400 -------~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~ 472 (830)
......+..+...|...|++++|.+.|++..+.+ +-+...+..+...+...|
T Consensus 451 ~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~---------------------P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 451 SIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD---------------------PGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHHHcC
Confidence 0011234556777788888888888887765543 123345566777888999
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCC----hh---------hHHHHHHHHHhcCC
Q 047408 473 ALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKD----LI---------SWTIMIAGYGMHGF 539 (830)
Q Consensus 473 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d----~~---------~~~~li~~~~~~g~ 539 (830)
+.++|...++.+++.. +.+.....++...+.+.|+.++|...++.++... .. .+..+...+...|+
T Consensus 510 ~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 510 QRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 9999999999998754 3455566666667888999999999999886431 11 12345677889999
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHH
Q 047408 540 GCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFI 618 (830)
Q Consensus 540 ~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~ 618 (830)
.++|+++++. ..++...+..+...+...|+.++|++.|+.... ..|+ ...+..++.+|...|++++|++.+
T Consensus 589 ~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~---~~P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 589 EAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT---REPGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred HHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999872 233444667777889999999999999999874 4564 778889999999999999999999
Q ss_pred HhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcc------hHHHHHHHHhhhcCHHHHHHHHHHHH-h
Q 047408 619 EMM-PVAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTG------YYVLLANVYAEAEKWEEVKKLREKIS-R 689 (830)
Q Consensus 619 ~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~------~~~~l~~~y~~~g~~~~A~~~~~~m~-~ 689 (830)
+.. ...|+ ..++..+..++...|+.++|...++++++..|+++. .+..++.+|...|++++|.+.++... .
T Consensus 661 ~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~ 740 (1157)
T PRK11447 661 AKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVA 740 (1157)
T ss_pred HHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 987 34554 567788888899999999999999999998776543 55667999999999999999977764 3
Q ss_pred CCCc
Q 047408 690 RGLK 693 (830)
Q Consensus 690 ~g~~ 693 (830)
.|+.
T Consensus 741 ~~~~ 744 (1157)
T PRK11447 741 SGIT 744 (1157)
T ss_pred cCCC
Confidence 4453
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-22 Score=250.28 Aligned_cols=592 Identities=12% Similarity=0.070 Sum_probs=365.0
Q ss_pred HHHHHHhcCChHHHHHHHHHhhcCCCC-hhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCccchH------------
Q 047408 69 EIGRFCEVGNLEKAMEVLYSSEKSKID-TKTYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLG------------ 135 (830)
Q Consensus 69 li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~------------ 135 (830)
.+..+...++.+.|.+.++++....|+ |..+..+...+...|+.++|.+.++++.+.. |++....
T Consensus 34 q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~~~ 111 (1157)
T PRK11447 34 QVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLSTPE 111 (1157)
T ss_pred HHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcCCc
Confidence 345567788999999999998877764 4577788888889999999999999998865 4323322
Q ss_pred ----HHHHHHHHhCCChHHHHHHHhcCCCCCcchHH----HHHHHHHhCCChhHHHHHHHHHHHcCCCCC-cccHHHHHH
Q 047408 136 ----SKLVFMFVTCGDLKEGRRVFNKIDNGKVFIWN----LLMHEYSKTGNFKESLYLFKKMQSLGIAAD-SYTFSCVLK 206 (830)
Q Consensus 136 ----~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~----~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~ 206 (830)
..+...+.+.|++++|.+.|+.....+..... .........|+.++|++.|+++.+.. |+ ...+..+-.
T Consensus 112 ~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~--P~~~~~~~~LA~ 189 (1157)
T PRK11447 112 GRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY--PGNTGLRNTLAL 189 (1157)
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 22233566677777777777765433221110 11111123467777777777776642 33 233444444
Q ss_pred HHHhcCCCCCHHHHHHHHhhCCCCCc------chHH-----------------HHHHHHHhCCChhHHHHHHHHHHHCCC
Q 047408 207 CLAVVGNSRRVKDAHKLFDELSDRDV------VSWN-----------------CMISGYIANGVAEKGLEVFKEMLNLGF 263 (830)
Q Consensus 207 ~~~~~g~~~~~~~A~~lf~~m~~~~~------~~~n-----------------~li~~~~~~g~~~~A~~l~~~m~~~g~ 263 (830)
.+...| +.++|.+.|+++...+. ..|- ..+..+-......+|...+.++.....
T Consensus 190 ll~~~g---~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~ 266 (1157)
T PRK11447 190 LLFSSG---RRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLA 266 (1157)
T ss_pred HHHccC---CHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhcc
Confidence 555455 46667776666532111 0110 001111111112233333333332222
Q ss_pred CCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCC--CCe---ehHHH
Q 047408 264 NVDLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGE--RSV---VSWTS 338 (830)
Q Consensus 264 ~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d~---~~~~~ 338 (830)
.|+.... ..-.++...|+++.|...+..+++.. +.+..++..|...|.+.|+.++|+..|++..+ |+. ..|..
T Consensus 267 dp~~~~~-~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ 344 (1157)
T PRK11447 267 DPAFRAR-AQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWES 344 (1157)
T ss_pred CcchHHH-HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHH
Confidence 2221110 11223344556666666666655542 22444555555666666666666666655433 211 11221
Q ss_pred H------------HHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhH
Q 047408 339 M------------IAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVS 406 (830)
Q Consensus 339 l------------i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 406 (830)
+ ...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|.+.+..+++.. +.+...+
T Consensus 345 ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~ 422 (1157)
T PRK11447 345 LLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAV 422 (1157)
T ss_pred HHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 1 223445566666666666665531 1122334444455555666666666666665543 2233444
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHH
Q 047408 407 NALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILR 486 (830)
Q Consensus 407 ~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 486 (830)
..+...|. .++.++|...++.+............. ......+......+...|+.++|.+.+..+++
T Consensus 423 ~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~------------~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~ 489 (1157)
T PRK11447 423 RGLANLYR-QQSPEKALAFIASLSASQRRSIDDIER------------SLQNDRLAQQAEALENQGKWAQAAELQRQRLA 489 (1157)
T ss_pred HHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHH------------HhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44555553 345566666555544321100000000 00011233344566778999999999999988
Q ss_pred hCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh---
Q 047408 487 HGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV--- 560 (830)
Q Consensus 487 ~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~--- 560 (830)
.. +.+..++..+...|.+.|++++|...|+++. ..+...+..+...+...|+.++|+..++++......++..
T Consensus 490 ~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~ 568 (1157)
T PRK11447 490 LD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELA 568 (1157)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHH
Confidence 65 4467788889999999999999999999864 3355566666667788999999999999875433222221
Q ss_pred ------HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 047408 561 ------SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGS 632 (830)
Q Consensus 561 ------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ 632 (830)
.+..+...+...|+.++|.++++. ..++...+..+.+.|.+.|++++|++.+++. ...| +...+..
T Consensus 569 ~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~ 642 (1157)
T PRK11447 569 QRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLG 642 (1157)
T ss_pred HHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 133456678899999999998872 2235567788999999999999999999987 4556 4688999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCC
Q 047408 633 LLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRG 691 (830)
Q Consensus 633 ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g 691 (830)
+...+...|+.++|+..++++++..|+++..+..++.+|...|++++|.++++.+....
T Consensus 643 la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 643 LIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 99999999999999999999999999999999999999999999999999999887543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-20 Score=222.45 Aligned_cols=598 Identities=10% Similarity=0.007 Sum_probs=417.0
Q ss_pred CCCCcchhHHHHHHHhcCChHHHHHHHHHhhcCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCccchHHHHH
Q 047408 60 VCKTKNYNAEIGRFCEVGNLEKAMEVLYSSEKSKIDTKTYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLGSKLV 139 (830)
Q Consensus 60 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li 139 (830)
|.+...+..+...|.+.|++++|+..+++.....|+...|..++... ++.+.|..+++++.+.. |++..++..+.
T Consensus 75 P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~--P~n~~~~~~la 149 (987)
T PRK09782 75 PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEELLAQQ--KACDAVPTLRC 149 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHHHHHhC--CCChhHHHHHH
Confidence 45667788888999999999999999999988877655555544333 78888999999998865 44455665566
Q ss_pred HH--------HHhCCChHHHHHHHhcCCCCC--cch-HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHH
Q 047408 140 FM--------FVTCGDLKEGRRVFNKIDNGK--VFI-WNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCL 208 (830)
Q Consensus 140 ~~--------y~~~g~~~~A~~~f~~m~~~~--~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 208 (830)
.. |.+.+...+|++ .....++ ..+ .-.+...|.+.|++++|++++.++.+.+... ..-...+-.++
T Consensus 150 ~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~-~~~~~~L~~ay 226 (987)
T PRK09782 150 RSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLS-AAERRQWFDVL 226 (987)
T ss_pred HHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHH
Confidence 55 777766666666 3333333 333 4444889999999999999999999986333 33344555566
Q ss_pred Hh-cCCCCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCC-CChhhHHHHHHHHhcCCChHHH
Q 047408 209 AV-VGNSRRVKDAHKLFDELSDRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFN-VDLATMVTVLSGCANCGALMFG 286 (830)
Q Consensus 209 ~~-~g~~~~~~~A~~lf~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd~~t~~~ll~a~~~~~~~~~~ 286 (830)
.. .+ + +.+..++....+.|...+..+...|.+.|+.++|.++++++...-.. |+..++..++.-....... +
T Consensus 227 ~q~l~---~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~--~ 300 (987)
T PRK09782 227 LAGQL---D-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQ--A 300 (987)
T ss_pred HHhhC---H-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhh--h
Confidence 65 34 3 77888877655578889999999999999999999999998765433 6666665554433322100 0
Q ss_pred HHHHHHHHHhCCCCC-chHHHHHHHHhhcCCChHHHHHHHhhcCCCCeehHHHHHHH--HHhcCChhHHHHHHHHHHHcC
Q 047408 287 RAVHAFALKACFSKE-ISFNNTLLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAG--YAREGVFDGAIRLFRGMVREG 363 (830)
Q Consensus 287 ~~l~~~~~~~g~~~~-~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~g 363 (830)
..-+. + .+.++ ....-++++.+.+.+..+.|.++.+.-+ .+. . ..+.. ....+...++....+.|.+.
T Consensus 301 ~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~--~~~r~~~~~~~~~~~~~~~~~~~~y~~- 371 (987)
T PRK09782 301 LANYT---V-QFADNRQYVVGATLPVLLKEGQYDAAQKLLATLP-ANE-M--LEERYAVSVATRNKAEALRLARLLYQQ- 371 (987)
T ss_pred ccchh---h-hhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCC-cch-H--HHHHHhhccccCchhHHHHHHHHHHhc-
Confidence 00000 0 01111 1122455889999999998888855222 222 2 23322 22346777788888888765
Q ss_pred CCC-CcchHHHHHHHhhccCcchhhhhHHHHHHhh-c-CCCchhhHHHHHHHHHhcCChH---HHHHHHhcCCCCCchhH
Q 047408 364 IEP-DVYAITSILHACACDGLLEIGKDVHDYIKEN-D-MQSSLYVSNALMDMYAKCGSMA---DAESVFNQMPVKDIVSW 437 (830)
Q Consensus 364 ~~p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-g-~~~~~~~~~~Li~~y~k~g~~~---~A~~~f~~m~~~~~~~~ 437 (830)
.| +....--+---....|+.++|.+++...... + -..+....+-|+..|.+.+.++ +|..+-..+..+..-.|
T Consensus 372 -~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 450 (987)
T PRK09782 372 -EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQW 450 (987)
T ss_pred -CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHH
Confidence 22 2222222222345778999999999988763 1 2235566778999999999844 44444443444433333
Q ss_pred HHHHH----HHHHHHHHHhCCCC--CccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHH
Q 047408 438 NTMIG----ALDLFVAMLQNFEP--DGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVL 511 (830)
Q Consensus 438 n~~i~----al~~f~~m~~~~~p--d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~ 511 (830)
-.-.. +.+.+.......++ +...+..+..++.. +..++|...+....... |+......+...+.+.|++++
T Consensus 451 ~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~ee 527 (987)
T PRK09782 451 QSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYAT 527 (987)
T ss_pred HhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHH
Confidence 22111 22333333222123 33344444444444 78888999777777654 454444445556679999999
Q ss_pred HHHHhhhCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhH-HHHHHHHHHccCCHHHHHHHHHHhHhh
Q 047408 512 ARSLFDMIP--AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVS-FISVLYACSHSGLVDEGWRFFNMMRYE 588 (830)
Q Consensus 512 A~~~f~~m~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~ 588 (830)
|...|+++. .++...|..+...+.+.|+.++|.+.|++.++. .|+... +..+.......|++++|...++...
T Consensus 528 Ai~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL-- 603 (987)
T PRK09782 528 ALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQPELALNDLTRSL-- 603 (987)
T ss_pred HHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHH--
Confidence 999999765 345566778888899999999999999999985 455543 3344455667799999999999987
Q ss_pred cCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHH
Q 047408 589 CNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVL 666 (830)
Q Consensus 589 ~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 666 (830)
.+.|+...|..+..++.+.|+.++|++.+++. ...|+ ...+..+..++...|+.++|+..++++++++|+++..+..
T Consensus 604 -~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~n 682 (987)
T PRK09782 604 -NIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQ 682 (987)
T ss_pred -HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 56688889999999999999999999999987 56675 5788888889999999999999999999999999999999
Q ss_pred HHHHHhhhcCHHHHHHHHHHHHh
Q 047408 667 LANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 667 l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
++.+|...|++++|...+++..+
T Consensus 683 LA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 683 LAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999999888765
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-17 Score=197.09 Aligned_cols=547 Identities=13% Similarity=0.039 Sum_probs=349.8
Q ss_pred ccCChhHHHHHHHHHHHhCCCCCccchHHHHHHHHHhCCChHHHHHHHhcCCCCC---cchHHHHHHHHHhCCChhHHHH
Q 047408 108 DLKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNKIDNGK---VFIWNLLMHEYSKTGNFKESLY 184 (830)
Q Consensus 108 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~ 184 (830)
..|++++|...+...++. .|++..++..|...|.+.|+.++|+..+++....+ ...+..+ ..+ +++++|..
T Consensus 56 ~~Gd~~~A~~~l~~Al~~--dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~L-a~i---~~~~kA~~ 129 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQ--VPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSL-AAI---PVEVKSVT 129 (987)
T ss_pred hCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH-HHh---ccChhHHH
Confidence 347888888888888874 46667788888888888888888888888765433 3333333 222 88888899
Q ss_pred HHHHHHHcCCCCCcc-cHHHHHHH--------HHhcCCCCCHHHHHHHHhhCCCC--Ccch-HHHHHHHHHhCCChhHHH
Q 047408 185 LFKKMQSLGIAADSY-TFSCVLKC--------LAVVGNSRRVKDAHKLFDELSDR--DVVS-WNCMISGYIANGVAEKGL 252 (830)
Q Consensus 185 l~~~m~~~g~~p~~~-t~~~ll~~--------~~~~g~~~~~~~A~~lf~~m~~~--~~~~-~n~li~~~~~~g~~~~A~ 252 (830)
+++++... .|+.. .+..+... |.+.+ ....+++ .+...+ +..+ .-.+...|.+.|++++|+
T Consensus 130 ~ye~l~~~--~P~n~~~~~~la~~~~~~~~l~y~q~e---qAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai 202 (987)
T PRK09782 130 TVEELLAQ--QKACDAVPTLRCRSEVGQNALRLAQLP---VARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQAD 202 (987)
T ss_pred HHHHHHHh--CCCChhHHHHHHHHhhccchhhhhhHH---HHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHH
Confidence 99998875 34432 23222222 44332 3444554 222223 3333 344488999999999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHhc-CCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCC-
Q 047408 253 EVFKEMLNLGFNVDLATMVTVLSGCAN-CGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGE- 330 (830)
Q Consensus 253 ~l~~~m~~~g~~pd~~t~~~ll~a~~~-~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~- 330 (830)
+++.+|.+.+... ..-...+-.++.. .++ +.+..++. ..+..++.+..++.+.|.+.|+.++|.+++++++.
T Consensus 203 ~lL~~L~k~~pl~-~~~~~~L~~ay~q~l~~-~~a~al~~----~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~ 276 (987)
T PRK09782 203 TLYNEARQQNTLS-AAERRQWFDVLLAGQLD-DRLLALQS----QGIFTDPQSRITYATALAYRGEKARLQHYLIENKPL 276 (987)
T ss_pred HHHHHHHhcCCCC-HHHHHHHHHHHHHhhCH-HHHHHHhc----hhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccc
Confidence 9999999875333 2224444445555 355 55555533 24447888889999999999999999999999864
Q ss_pred ----CCeehHHHH------------------------------HHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHH
Q 047408 331 ----RSVVSWTSM------------------------------IAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILH 376 (830)
Q Consensus 331 ----~d~~~~~~l------------------------------i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 376 (830)
|+..+|--. +.-+.++++++.+.++ ..+.|.......-..
T Consensus 277 ~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~r~~ 350 (987)
T PRK09782 277 FTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKL------LATLPANEMLEERYA 350 (987)
T ss_pred ccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHH------hcCCCcchHHHHHHh
Confidence 222232222 2333444444433322 123444432211111
Q ss_pred HhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCC--CchhHHHHH-HHHHHHHHHHhC
Q 047408 377 ACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVK--DIVSWNTMI-GALDLFVAMLQN 453 (830)
Q Consensus 377 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~--~~~~~n~~i-~al~~f~~m~~~ 453 (830)
+....+...++.+.+..+.+.. +.+....--+.-...+.|+.++|.++|+..... +...--+++ ....++ ...
T Consensus 351 ~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~ 426 (987)
T PRK09782 351 VSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLL---ESH 426 (987)
T ss_pred hccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHH---HhC
Confidence 2223355555555565555542 224444444555567888889999888876542 111000111 000000 001
Q ss_pred CCCCccccccch-h------hhcchhhHHHHHHHHHHHHHh-CC-CC--chhHHhHHHHHHHhcCCHHHHHHHhhhCCCC
Q 047408 454 FEPDGVTMACIL-P------ACASLAALERGREIHGYILRH-GI-SA--DRNVANAIVDMYVKCGVLVLARSLFDMIPAK 522 (830)
Q Consensus 454 ~~pd~~t~~~ll-~------a~~~~~~~~~a~~i~~~~~~~-g~-~~--~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~ 522 (830)
+.++..+-...+ . -|.-.|....+......+.+. +. ++ +...+..+...+.. |+.++|...|.+....
T Consensus 427 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~ 505 (987)
T PRK09782 427 PYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR 505 (987)
T ss_pred CcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh
Confidence 111111111000 0 022233333333333333332 22 34 67788888888887 8999999988776533
Q ss_pred ChhhHHHHHHHH--HhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHH
Q 047408 523 DLISWTIMIAGY--GMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYA 599 (830)
Q Consensus 523 d~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~ 599 (830)
.+..|+.+..++ .+.|++++|+..|+++.. ..|+...+..+..++.+.|+.++|.++++...+. .|+ ...+.
T Consensus 506 ~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~--~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l---~P~~~~l~~ 580 (987)
T PRK09782 506 QPDAWQHRAVAYQAYQVEDYATALAAWQKISL--HDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR---GLGDNALYW 580 (987)
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhc--cCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCccHHHHH
Confidence 333555554454 589999999999999866 3566666677778889999999999999998743 344 33344
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHH
Q 047408 600 CMVDLLSRTGNLSEAYRFIEMM-PVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWE 678 (830)
Q Consensus 600 ~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 678 (830)
.+...+.+.|++++|...+++. ...|+...|..+...+...|+.++|+..++++++++|+++..+..++.++...|+++
T Consensus 581 ~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~e 660 (987)
T PRK09782 581 WLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIA 660 (987)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 4445555679999999999987 677888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 047408 679 EVKKLREKISR 689 (830)
Q Consensus 679 ~A~~~~~~m~~ 689 (830)
+|...++...+
T Consensus 661 eAi~~l~~AL~ 671 (987)
T PRK09782 661 QSREMLERAHK 671 (987)
T ss_pred HHHHHHHHHHH
Confidence 99999887764
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.6e-18 Score=176.91 Aligned_cols=433 Identities=14% Similarity=0.121 Sum_probs=330.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHH-HHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhh
Q 047408 235 WNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLS-GCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYS 313 (830)
Q Consensus 235 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~-a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~ 313 (830)
...|..-..+.|++++|++.-...-++ .|+..--..++. .+.+...++...+--...++.. +.-...|+.+.+.+-
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~--d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQE--DPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhcc--CCCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHH
Confidence 344555566789999998876544332 222222222222 2344444444333333333322 223456677888899
Q ss_pred cCCChHHHHHHHhhcCC---CCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHH-HhhccCcchhhhh
Q 047408 314 KCGDLDGAIRVFEKMGE---RSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILH-ACACDGLLEIGKD 389 (830)
Q Consensus 314 k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~-a~~~~~~~~~a~~ 389 (830)
..|++++|..+++.+.+ ..+..|-.+..++...|+.+.|.+.|.+.++ +.|+.+...+-+. .....|++++|..
T Consensus 128 erg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred HhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHH
Confidence 99999999999998866 3567899999999999999999999998877 4677665544433 3344688899999
Q ss_pred HHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHH-------------HHHHHHHHHhCCCC
Q 047408 390 VHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIG-------------ALDLFVAMLQNFEP 456 (830)
Q Consensus 390 ~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~-------------al~~f~~m~~~~~p 456 (830)
.+.+.++.. +.-..+|+.|...+-..|++..|+.-|++...-|.---.+-|. |+..+.+.....+.
T Consensus 206 cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn 284 (966)
T KOG4626|consen 206 CYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN 284 (966)
T ss_pred HHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc
Confidence 888888765 2335678888888999999999999999887665533333332 55555555555455
Q ss_pred CccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHH
Q 047408 457 DGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAG 533 (830)
Q Consensus 457 d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~ 533 (830)
..+.+..+...|...|.++.|...+++.++.. +.-+..|+.|..++-..|++.+|.+.+.+.. ..-..+.|.|...
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni 363 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNI 363 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 56778888888899999999999999988754 2336789999999999999999999998765 2345688889999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCH
Q 047408 534 YGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNL 611 (830)
Q Consensus 534 ~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~ 611 (830)
|...|..++|..+|....+ +.|.-. .++.|.+.+-+.|.+++|+..+++.. .|.|+ ...|+.|...|-..|+.
T Consensus 364 ~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhH
Confidence 9999999999999999988 778765 68899999999999999999999877 78898 68899999999999999
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHH
Q 047408 612 SEAYRFIEMM-PVAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEE 679 (830)
Q Consensus 612 ~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 679 (830)
+.|.+.+.+. .+.|. +...+.|.+.++..|++.+|+..++.+++++||.+.+|..|...+.---.|.+
T Consensus 439 ~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 9999999886 67776 57889999999999999999999999999999999999888877766667766
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.1e-18 Score=185.45 Aligned_cols=291 Identities=16% Similarity=0.145 Sum_probs=191.7
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCC-cchHHHHHHHhhccCcchhhhhHHHHHHhhcCCC---chhhHHHHHHHHHhcCC
Q 047408 343 YAREGVFDGAIRLFRGMVREGIEPD-VYAITSILHACACDGLLEIGKDVHDYIKENDMQS---SLYVSNALMDMYAKCGS 418 (830)
Q Consensus 343 ~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~Li~~y~k~g~ 418 (830)
+...|++++|+..|+++.+. .|+ ..++..+...+...|+++.|..+++.+++.+..+ ...++..|...|.+.|+
T Consensus 45 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 34445555555555555543 222 2234444444455555555555555544432111 12456778888888888
Q ss_pred hHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhH
Q 047408 419 MADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANA 498 (830)
Q Consensus 419 ~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~ 498 (830)
+++|..+|+++.+.+ +.+..+++.
T Consensus 123 ~~~A~~~~~~~l~~~--------------------------------------------------------~~~~~~~~~ 146 (389)
T PRK11788 123 LDRAEELFLQLVDEG--------------------------------------------------------DFAEGALQQ 146 (389)
T ss_pred HHHHHHHHHHHHcCC--------------------------------------------------------cchHHHHHH
Confidence 888888888775432 123344555
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCCCC--------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHH
Q 047408 499 IVDMYVKCGVLVLARSLFDMIPAKD--------LISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYAC 569 (830)
Q Consensus 499 Li~~y~k~g~~~~A~~~f~~m~~~d--------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~ 569 (830)
++.+|.+.|++++|.+.|+.+...+ ...|..+...+.+.|++++|++.|+++.+. .|+.. .+..+...+
T Consensus 147 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~ 224 (389)
T PRK11788 147 LLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAA--DPQCVRASILLGDLA 224 (389)
T ss_pred HHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--CcCCHHHHHHHHHHH
Confidence 6666666666666666666553211 113455666777778888888888887763 45433 566666777
Q ss_pred HccCCHHHHHHHHHHhHhhcCCCCC--cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHH
Q 047408 570 SHSGLVDEGWRFFNMMRYECNIEPK--LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPDATIWGSLLCGCRIHHEVKLA 646 (830)
Q Consensus 570 ~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a 646 (830)
.+.|++++|.++|+.+... .|+ ...+..++.+|.+.|++++|.+.++++ ...|+...+..+...+...|++++|
T Consensus 225 ~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A 301 (389)
T PRK11788 225 LAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAA 301 (389)
T ss_pred HHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHH
Confidence 7888888888888877632 343 355677888888888888888888886 4567766678888888999999999
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHhh---hcCHHHHHHHHHHHHhCCCcCCCc
Q 047408 647 EKVAEHVFELEPDNTGYYVLLANVYAE---AEKWEEVKKLREKISRRGLKKNPG 697 (830)
Q Consensus 647 ~~~~~~~~~l~p~~~~~~~~l~~~y~~---~g~~~~A~~~~~~m~~~g~~~~~~ 697 (830)
..+++++++..|++.... .+...+.. .|+.+++..+++.|.+++++++|.
T Consensus 302 ~~~l~~~l~~~P~~~~~~-~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 302 QALLREQLRRHPSLRGFH-RLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHhCcCHHHHH-HHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 999999999999876443 33444332 568999999999999999999986
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.2e-17 Score=168.80 Aligned_cols=371 Identities=14% Similarity=0.188 Sum_probs=295.1
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCch-HHHHHH
Q 047408 232 VVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVD-LATMVTVLSGCANCGALMFGRAVHAFALKACFSKEIS-FNNTLL 309 (830)
Q Consensus 232 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~-~~~~Li 309 (830)
..+|..+...+-..|+.++|+.+++.|.+. +|+ ...|..+-.++...|+.+.+.+.+...++.. |+.+ +.+-+-
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lg 191 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLG 191 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchh
Confidence 457777888888888888888888888764 554 4567777777888888888888887777643 3332 223444
Q ss_pred HHhhcCCChHHHHHHHhhcCC--C-CeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-cchHHHHHHHhhccCcch
Q 047408 310 DMYSKCGDLDGAIRVFEKMGE--R-SVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPD-VYAITSILHACACDGLLE 385 (830)
Q Consensus 310 ~~y~k~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~ 385 (830)
+..-..|++++|..-+.+..+ | -.+.|+.+...+-.+|+..+|+..|++... +.|+ ...|..|-..+...+.++
T Consensus 192 nLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d 269 (966)
T KOG4626|consen 192 NLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFD 269 (966)
T ss_pred HHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcch
Confidence 555567889998888876544 4 357899999999999999999999999876 4565 345667777777777788
Q ss_pred hhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCC-ccccccc
Q 047408 386 IGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPD-GVTMACI 464 (830)
Q Consensus 386 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd-~~t~~~l 464 (830)
.|...+....... +....++..|...|-..|.+|-|+..+++..+.+ |+ ...|+.+
T Consensus 270 ~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~----------------------P~F~~Ay~Nl 326 (966)
T KOG4626|consen 270 RAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ----------------------PNFPDAYNNL 326 (966)
T ss_pred HHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC----------------------CCchHHHhHH
Confidence 8777777666543 3345667778888999999999999998876653 33 4578889
Q ss_pred hhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCC--CC-hhhHHHHHHHHHhcCChH
Q 047408 465 LPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPA--KD-LISWTIMIAGYGMHGFGC 541 (830)
Q Consensus 465 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d-~~~~~~li~~~~~~g~~~ 541 (830)
..|+-..|++.+|.+.+...+... +......+.|...|...|.+++|..+|....+ |+ ....|.|...|-++|+.+
T Consensus 327 anALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~ 405 (966)
T KOG4626|consen 327 ANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLD 405 (966)
T ss_pred HHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHH
Confidence 999999999999999999988865 34466778899999999999999999987653 32 357899999999999999
Q ss_pred HHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHH
Q 047408 542 DAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIE 619 (830)
Q Consensus 542 ~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~ 619 (830)
+|+..|++.++ ++|+.. .|+.+...+-..|+++.|.+.+.... .+.|. .+..+.|..+|-.+|++.+|++-++
T Consensus 406 ~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI---~~nPt~AeAhsNLasi~kDsGni~~AI~sY~ 480 (966)
T KOG4626|consen 406 DAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAI---QINPTFAEAHSNLASIYKDSGNIPEAIQSYR 480 (966)
T ss_pred HHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHH---hcCcHHHHHHhhHHHHhhccCCcHHHHHHHH
Confidence 99999999998 899976 79999999999999999999998877 67887 7888999999999999999999999
Q ss_pred hC-CCCCCH-HHHHHHHHHH
Q 047408 620 MM-PVAPDA-TIWGSLLCGC 637 (830)
Q Consensus 620 ~m-~~~p~~-~~~~~ll~~~ 637 (830)
+. .++||. ..+-.|+-+.
T Consensus 481 ~aLklkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 481 TALKLKPDFPDAYCNLLHCL 500 (966)
T ss_pred HHHccCCCCchhhhHHHHHH
Confidence 86 778873 5666666554
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-17 Score=184.19 Aligned_cols=304 Identities=15% Similarity=0.156 Sum_probs=192.0
Q ss_pred HHHhCCChhHHHHHHHHHHHCCCCCC-hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCC---chHHHHHHHHhhcCC
Q 047408 241 GYIANGVAEKGLEVFKEMLNLGFNVD-LATMVTVLSGCANCGALMFGRAVHAFALKACFSKE---ISFNNTLLDMYSKCG 316 (830)
Q Consensus 241 ~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~---~~~~~~Li~~y~k~g 316 (830)
.+...|++++|++.|.++.+. .|+ ..++..+...+...|+++.+..++..+++.+..++ ..++..|...|.+.|
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 345566777777777777654 333 33555555666666666666666666665432111 235677888899999
Q ss_pred ChHHHHHHHhhcCC---CCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcc----hHHHHHHHhhccCcchhhhh
Q 047408 317 DLDGAIRVFEKMGE---RSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVY----AITSILHACACDGLLEIGKD 389 (830)
Q Consensus 317 ~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~----t~~~ll~a~~~~~~~~~a~~ 389 (830)
++++|.++|+++.+ .+..+++.++..|.+.|++++|++.|+.+.+.+..++.. .+..+...+...|++++|..
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999998865 456688889999999999999999999988765333221 23445556667788888888
Q ss_pred HHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhc
Q 047408 390 VHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACA 469 (830)
Q Consensus 390 ~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~ 469 (830)
.+..+.+.. +.+...+..+...|.+.|++++|.+.|+++...+. .....++..+..++.
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p--------------------~~~~~~~~~l~~~~~ 260 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDP--------------------EYLSEVLPKLMECYQ 260 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh--------------------hhHHHHHHHHHHHHH
Confidence 888877654 33455667777888888888888888777654321 011223444555556
Q ss_pred chhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC--CCChhhHHHHHHHHHh---cCChHHHH
Q 047408 470 SLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP--AKDLISWTIMIAGYGM---HGFGCDAI 544 (830)
Q Consensus 470 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~--~~d~~~~~~li~~~~~---~g~~~~A~ 544 (830)
..|+.++|.+.+..+.+.. |+...+..++..|.+.|++++|..+|+++. .|+..+++.++..+.. +|+.++++
T Consensus 261 ~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~ 338 (389)
T PRK11788 261 ALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESL 338 (389)
T ss_pred HcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHH
Confidence 6666666666666655543 333444556666666666666666665543 3555556655555443 44566666
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHccCCH
Q 047408 545 ATFNDMRQAGIEPDEVSFISVLYACSHSGLV 575 (830)
Q Consensus 545 ~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~ 575 (830)
.+|++|.+.+++|+.. .+|++.|.+
T Consensus 339 ~~~~~~~~~~~~~~p~------~~c~~cg~~ 363 (389)
T PRK11788 339 LLLRDLVGEQLKRKPR------YRCRNCGFT 363 (389)
T ss_pred HHHHHHHHHHHhCCCC------EECCCCCCC
Confidence 6666666655555554 235555544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.1e-16 Score=179.26 Aligned_cols=417 Identities=11% Similarity=0.014 Sum_probs=273.3
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhc
Q 047408 235 WNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSK 314 (830)
Q Consensus 235 ~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k 314 (830)
+..+...|.+.|++++|++.|.+... +.|+...|..+-.++...|+++.+...+..+++.. +.+...+..+...|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 44456677788888888888888765 45677777777777777888888888777777653 2344566677778888
Q ss_pred CCChHHHHHHHhhcCCCC---eehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHH
Q 047408 315 CGDLDGAIRVFEKMGERS---VVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVH 391 (830)
Q Consensus 315 ~g~~~~A~~~f~~m~~~d---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~ 391 (830)
.|++++|..-|......+ ......++..+.. ..+.....+..+. -.++...+..+ ..+...........-+
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILET-KPENLPSVTFV-GNYLQSFRPKPRPAGL 280 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhc-CCCCCCCHHHH-HHHHHHccCCcchhhh
Confidence 888888887765543211 1111111111111 1222222222222 11111222211 1121111111111111
Q ss_pred HHHHhhcCCCchhhHHHHHHHH------HhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCC-Cccccccc
Q 047408 392 DYIKENDMQSSLYVSNALMDMY------AKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEP-DGVTMACI 464 (830)
Q Consensus 392 ~~~~~~g~~~~~~~~~~Li~~y------~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~p-d~~t~~~l 464 (830)
.... ..+......++..+ ...+++++|.+.|+.....+.. .| +...+..+
T Consensus 281 ~~~~----~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~-------------------~~~~a~a~~~l 337 (615)
T TIGR00990 281 EDSN----ELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKL-------------------GEKEAIALNLR 337 (615)
T ss_pred hccc----ccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCC-------------------ChhhHHHHHHH
Confidence 1100 00111111111111 2346788888888876654210 12 22234444
Q ss_pred hhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChH
Q 047408 465 LPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGC 541 (830)
Q Consensus 465 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~ 541 (830)
...+...|++++|...+..+++.. +.+...+..+...|...|++++|...|++.. ..+...|..+...|...|+++
T Consensus 338 g~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 416 (615)
T TIGR00990 338 GTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFA 416 (615)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 455567788888888888887753 3346677888899999999999999998764 346788999999999999999
Q ss_pred HHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHH
Q 047408 542 DAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIE 619 (830)
Q Consensus 542 ~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~ 619 (830)
+|+..|++.++ +.|+.. .+..+..++.+.|++++|...|+.... ..|+ ...|..+..+|...|++++|++.++
T Consensus 417 ~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~ 491 (615)
T TIGR00990 417 QAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK---NFPEAPDVYNYYGELLLDQNKFDEAIEKFD 491 (615)
T ss_pred HHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999998 567654 566777888899999999999999874 3454 6788899999999999999999998
Q ss_pred hC-CCCCCH-H-------HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 620 MM-PVAPDA-T-------IWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 620 ~m-~~~p~~-~-------~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
+. .+.|+. . .++..+..+...|++++|+..++++++++|++...+..|+.+|...|++++|.+.++...+
T Consensus 492 ~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 492 TAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 85 444431 1 1222222334469999999999999999999999999999999999999999999888764
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=7e-15 Score=174.55 Aligned_cols=369 Identities=11% Similarity=0.035 Sum_probs=251.3
Q ss_pred HHHHHHHHhhcCCChHHHHHHHhhcCC---CCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhc
Q 047408 304 FNNTLLDMYSKCGDLDGAIRVFEKMGE---RSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACAC 380 (830)
Q Consensus 304 ~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 380 (830)
.+..+...+.+.|++++|.++|++... .+...+..+...+...|++++|+..+++..+. .|+...+..+..++..
T Consensus 51 ~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~ 128 (765)
T PRK10049 51 GYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG--APDKANLLALAYVYKR 128 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 345666666777777777777776432 23445666667777777777777777777664 3333225555556677
Q ss_pred cCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccc
Q 047408 381 DGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVT 460 (830)
Q Consensus 381 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t 460 (830)
.|+.++|...+..+++.. +.+..++..+...+.+.|..++|.+.++.... +.. +..-+........ .
T Consensus 129 ~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~-~~~~l~~~~~~~~----------~ 195 (765)
T PRK10049 129 AGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPA-EKRDLEADAAAEL----------V 195 (765)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHH-HHHHHHHHHHHHH----------H
Confidence 777777777777777765 33455666678888888888889888887765 211 1000000000000 0
Q ss_pred cccchhhhcchhhH---HHHHHHHHHHHHh-CCCCchh--HHhHH---HHHHHhcCCHHHHHHHhhhCCCCC--hhh--H
Q 047408 461 MACILPACASLAAL---ERGREIHGYILRH-GISADRN--VANAI---VDMYVKCGVLVLARSLFDMIPAKD--LIS--W 527 (830)
Q Consensus 461 ~~~ll~a~~~~~~~---~~a~~i~~~~~~~-g~~~~~~--~~~~L---i~~y~k~g~~~~A~~~f~~m~~~d--~~~--~ 527 (830)
-..+.......+.+ +.|.+.++.+++. .-.|+.. ...+. +..+...|++++|...|+.+...+ ... -
T Consensus 196 r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~ 275 (765)
T PRK10049 196 RLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQ 275 (765)
T ss_pred HhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHH
Confidence 00111111223333 6777777777754 2223221 11111 223456799999999999987432 111 1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-----hHHHHHHHHHHccCCHHHHHHHHHHhHhhcC----------CC
Q 047408 528 TIMIAGYGMHGFGCDAIATFNDMRQAGIEPDE-----VSFISVLYACSHSGLVDEGWRFFNMMRYECN----------IE 592 (830)
Q Consensus 528 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~ 592 (830)
-.+...|...|++++|+..|+++.+. .|.. .....+..++...|++++|.++++.+..... -.
T Consensus 276 ~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~ 353 (765)
T PRK10049 276 RWVASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSI 353 (765)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCC
Confidence 22567899999999999999998864 3332 3456666788999999999999999874321 11
Q ss_pred CC---cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 047408 593 PK---LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLL 667 (830)
Q Consensus 593 p~---~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 667 (830)
|+ ...+..+..++...|++++|++.++++ ...| +...|..+...+...|+.++|+..++++++++|+++..+..+
T Consensus 354 p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~ 433 (765)
T PRK10049 354 PNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQ 433 (765)
T ss_pred CCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHH
Confidence 22 224567788999999999999999997 4445 468899999999999999999999999999999999999999
Q ss_pred HHHHhhhcCHHHHHHHHHHHHh
Q 047408 668 ANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 668 ~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
+.++...|+|++|..+++.+.+
T Consensus 434 a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 434 AWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999999999988875
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.7e-14 Score=165.35 Aligned_cols=442 Identities=12% Similarity=0.052 Sum_probs=265.6
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHhhCC---CCCcchHHHHHHH
Q 047408 165 IWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRRVKDAHKLFDELS---DRDVVSWNCMISG 241 (830)
Q Consensus 165 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~A~~lf~~m~---~~~~~~~n~li~~ 241 (830)
.+..+...|.+.|++++|+..|++... +.|+...|..+-.++...| +.++|...+++.. +.+...|..+..+
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~---~~~~Ai~~~~~al~l~p~~~~a~~~~a~a 203 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALG---DWEKVVEDTTAALELDPDYSKALNRRANA 203 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhC---CHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 355667788889999999999998775 4577777777777888777 4777777776644 3456678888888
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChHHH
Q 047408 242 YIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGA 321 (830)
Q Consensus 242 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A 321 (830)
|...|++++|+.-|......+-..+. ....++..... ..+.......++.. +.+...+..+ ..|........+
T Consensus 204 ~~~lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~-~~~~~~~~~~~~ 276 (615)
T TIGR00990 204 YDGLGKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFV-GNYLQSFRPKPR 276 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHH-HHHHHHccCCcc
Confidence 99999999998888766543211111 11111111000 01111111111111 1111111111 111111111111
Q ss_pred HHHHhhcCCCCe---ehHHHHHHHH---HhcCChhHHHHHHHHHHHcC-CCCCcchHHHHHHHhhccCcchhhhhHHHHH
Q 047408 322 IRVFEKMGERSV---VSWTSMIAGY---AREGVFDGAIRLFRGMVREG-IEPDVYAITSILHACACDGLLEIGKDVHDYI 394 (830)
Q Consensus 322 ~~~f~~m~~~d~---~~~~~li~~~---~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~ 394 (830)
..-++...+-+. ..+..+...+ ...+.+++|++.|++....+ ..
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~----------------------------- 327 (615)
T TIGR00990 277 PAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLG----------------------------- 327 (615)
T ss_pred hhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCC-----------------------------
Confidence 111111111000 0010000000 11234444555444444332 11
Q ss_pred HhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCC-ccccccchhhhcchhh
Q 047408 395 KENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPD-GVTMACILPACASLAA 473 (830)
Q Consensus 395 ~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd-~~t~~~ll~a~~~~~~ 473 (830)
+.+...++.+...|...|++++|...|+...+.+ |+ ...+..+...+...|+
T Consensus 328 -----~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~----------------------P~~~~~~~~la~~~~~~g~ 380 (615)
T TIGR00990 328 -----EKEAIALNLRGTFKCLKGKHLEALADLSKSIELD----------------------PRVTQSYIKRASMNLELGD 380 (615)
T ss_pred -----hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----------------------CCcHHHHHHHHHHHHHCCC
Confidence 1223445555566666666666666666554432 22 2234444445555666
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 047408 474 LERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDM 550 (830)
Q Consensus 474 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 550 (830)
+++|...+..+++.. +.+..++..+...|...|++++|...|++.. ..+...|..+...+.+.|++++|+..|++.
T Consensus 381 ~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~a 459 (615)
T TIGR00990 381 PDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRC 459 (615)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 666666666666543 4467788888999999999999999998765 335677888888999999999999999998
Q ss_pred HHcCCCCCh-hHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCc--ch------HHHHHHHHHhcCCHHHHHHHHHhC
Q 047408 551 RQAGIEPDE-VSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKL--EH------YACMVDLLSRTGNLSEAYRFIEMM 621 (830)
Q Consensus 551 ~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~------y~~lv~~l~r~g~~~eA~~~~~~m 621 (830)
++ ..|+. ..+..+..++...|++++|++.|+... .+.|+. .+ ++.....+...|++++|.+++++.
T Consensus 460 l~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al---~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kA 534 (615)
T TIGR00990 460 KK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAI---ELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKA 534 (615)
T ss_pred HH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHH---hcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 87 45664 467788888999999999999999876 344431 11 122223344579999999999885
Q ss_pred -CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 622 -PVAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 622 -~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
.+.|+ ...|..+...+...|++++|...+++++++.+..... ..+..|.+|.++....+
T Consensus 535 l~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~--------~~a~~~~~a~~~~~~~~ 595 (615)
T TIGR00990 535 LIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGEL--------VQAISYAEATRTQIQVQ 595 (615)
T ss_pred HhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHH--------HHHHHHHHHHHHHHHHH
Confidence 66675 4678999999999999999999999999998764332 23335556666655444
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.1e-15 Score=172.00 Aligned_cols=324 Identities=10% Similarity=-0.003 Sum_probs=199.4
Q ss_pred HHHHhhcCCChHHHHHHHhhcCC---CCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc-chHHHHHHHhhccCc
Q 047408 308 LLDMYSKCGDLDGAIRVFEKMGE---RSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDV-YAITSILHACACDGL 383 (830)
Q Consensus 308 Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~ 383 (830)
++-...+.|+.++|..+++.... .+...+..++.+....|++++|+..|+++... .|+. ..+..+...+...|+
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCC
Confidence 34455566777777777766543 23344555556666677777777777777653 3443 344555556667777
Q ss_pred chhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCcccccc
Q 047408 384 LEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMAC 463 (830)
Q Consensus 384 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ 463 (830)
++.|...+..+++.. +.+..++..+...|...|+.++|...++.+...+ |+......
T Consensus 126 ~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~----------------------P~~~~a~~ 182 (656)
T PRK15174 126 YATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV----------------------PPRGDMIA 182 (656)
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC----------------------CCCHHHHH
Confidence 777777777776653 3345566667777777777777777666543321 22222221
Q ss_pred chhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCCh
Q 047408 464 ILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFG 540 (830)
Q Consensus 464 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~ 540 (830)
.+..+...|++++|...+..+++....++......+...|.+.|+.++|...|++.. ..+...++.+...|.+.|++
T Consensus 183 ~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~ 262 (656)
T PRK15174 183 TCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRS 262 (656)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCc
Confidence 223355667777777777766655322333444445566777777777777777654 23455666677777777777
Q ss_pred HH----HHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHH
Q 047408 541 CD----AIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEA 614 (830)
Q Consensus 541 ~~----A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA 614 (830)
++ |+..|++..+ +.|+.. .+..+...+...|++++|..+++.... +.|+ ...+..+..+|.+.|++++|
T Consensus 263 ~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La~~l~~~G~~~eA 337 (656)
T PRK15174 263 REAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYARALRQVGQYTAA 337 (656)
T ss_pred hhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 64 6777777776 455544 566666677777777777777776653 3443 34455566777777777777
Q ss_pred HHHHHhC-CCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 047408 615 YRFIEMM-PVAPDATIWG-SLLCGCRIHHEVKLAEKVAEHVFELEPDNT 661 (830)
Q Consensus 615 ~~~~~~m-~~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~ 661 (830)
.+.++++ ...|+...+. .+..++...|+.++|...++++++..|++.
T Consensus 338 ~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 338 SDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 7777665 3455543333 334556677777777777777777777653
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=5e-15 Score=172.03 Aligned_cols=351 Identities=8% Similarity=-0.050 Sum_probs=253.2
Q ss_pred hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCC--C-CeehHHHHHHHHH
Q 047408 268 ATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGE--R-SVVSWTSMIAGYA 344 (830)
Q Consensus 268 ~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~ 344 (830)
.-...++..+-+.|+++.+..+...++.....+....++ +.......|+.++|...|+++.. | +...|..+...+.
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~-l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRR-WVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL 121 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHH-HhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 345556777888889999988888888776555444433 44555668999999999988755 3 4567888888888
Q ss_pred hcCChhHHHHHHHHHHHcCCCCC-cchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHH
Q 047408 345 REGVFDGAIRLFRGMVREGIEPD-VYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAE 423 (830)
Q Consensus 345 ~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~ 423 (830)
+.|++++|+..|++.... .|+ ...+..+...+...|+.++|...+..+......+ ...+..+ ..+.+.|++++|.
T Consensus 122 ~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 122 KSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred HcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHH
Confidence 899999999999888764 455 4456667778888899999988888777665322 3333333 3477889999998
Q ss_pred HHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHH
Q 047408 424 SVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMY 503 (830)
Q Consensus 424 ~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y 503 (830)
..++.+...+. .++......+..++...|+.++|.+.+..+++.. +.+..++..+..+|
T Consensus 198 ~~~~~~l~~~~--------------------~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l 256 (656)
T PRK15174 198 DLARALLPFFA--------------------LERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAY 256 (656)
T ss_pred HHHHHHHhcCC--------------------CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 88887655432 1233344444566778888999998888888765 45677788888889
Q ss_pred HhcCCHHH----HHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCH
Q 047408 504 VKCGVLVL----ARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLV 575 (830)
Q Consensus 504 ~k~g~~~~----A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~ 575 (830)
.+.|++++ |...|++.. ..+...|..+...+...|++++|+..+++..+ ..|+.. ....+..++...|++
T Consensus 257 ~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~~~~a~~~La~~l~~~G~~ 334 (656)
T PRK15174 257 YQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA--THPDLPYVRAMYARALRQVGQY 334 (656)
T ss_pred HHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCH
Confidence 99998885 788888764 33566888888888999999999999998887 466654 455666778888999
Q ss_pred HHHHHHHHHhHhhcCCCCCc-chHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047408 576 DEGWRFFNMMRYECNIEPKL-EHYACMVDLLSRTGNLSEAYRFIEMM-PVAPDATIWGSLLCGCRIHHEVKLAEKVAEHV 653 (830)
Q Consensus 576 ~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 653 (830)
++|...|+.+.. ..|+. ..+..+..+|...|+.++|.+.+++. ...|+.. ..++++|...+.++
T Consensus 335 ~eA~~~l~~al~---~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~-----------~~~~~ea~~~~~~~ 400 (656)
T PRK15174 335 TAASDEFVQLAR---EKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL-----------PQSFEEGLLALDGQ 400 (656)
T ss_pred HHHHHHHHHHHH---hCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc-----------hhhHHHHHHHHHHH
Confidence 999998888764 34543 23444567788899999999988876 4555542 34566777777777
Q ss_pred hccCCCC
Q 047408 654 FELEPDN 660 (830)
Q Consensus 654 ~~l~p~~ 660 (830)
++.-+..
T Consensus 401 ~~~~~~~ 407 (656)
T PRK15174 401 ISAVNLP 407 (656)
T ss_pred HHhcCCc
Confidence 7655443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-13 Score=159.62 Aligned_cols=432 Identities=12% Similarity=0.060 Sum_probs=274.1
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCh--hhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChH
Q 047408 242 YIANGVAEKGLEVFKEMLNLGFNVDL--ATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLD 319 (830)
Q Consensus 242 ~~~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~ 319 (830)
..+.|+++.|++.|++..+. .|+. ..+ .++..+...|+.++|.......+ ..-........++...|...|+++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~-~p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ-SSMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCHH
Confidence 45667777777777776653 3443 122 55555566677777776666665 101111222223345677777777
Q ss_pred HHHHHHhhcCCC---CeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHh
Q 047408 320 GAIRVFEKMGER---SVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKE 396 (830)
Q Consensus 320 ~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 396 (830)
+|.++|+++.+. |...+..++..|.+.++.++|++.++++... .|+...+..++..+...++..+|.+.++.+++
T Consensus 120 ~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 120 QALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 777777777552 3445556667777777777777777777654 45544553333333334444447777777777
Q ss_pred hcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHH-HHHHHHHHHhCC-CCCccccccchhhhcchhhH
Q 047408 397 NDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIG-ALDLFVAMLQNF-EPDGVTMACILPACASLAAL 474 (830)
Q Consensus 397 ~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~-al~~f~~m~~~~-~pd~~t~~~ll~a~~~~~~~ 474 (830)
.. +.+...+..++....+.|-...|.++..+-+. ..+-..... -...+.++.+.. .|+.. - -.+-.-+
T Consensus 198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~--~f~~~~~~~l~~~~~a~~vr~a~~~~~~-~------~~r~~~~ 267 (822)
T PRK14574 198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPN--LVSAEHYRQLERDAAAEQVRMAVLPTRS-E------TERFDIA 267 (822)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcc--ccCHHHHHHHHHHHHHHHHhhccccccc-c------hhhHHHH
Confidence 65 45566677777778888888888777766542 111000000 001111111111 11100 0 0011123
Q ss_pred HHHHHHHHHHHHh-CC-CCch-hHHhHH---HHHHHhcCCHHHHHHHhhhCCCC--Chh--hHHHHHHHHHhcCChHHHH
Q 047408 475 ERGREIHGYILRH-GI-SADR-NVANAI---VDMYVKCGVLVLARSLFDMIPAK--DLI--SWTIMIAGYGMHGFGCDAI 544 (830)
Q Consensus 475 ~~a~~i~~~~~~~-g~-~~~~-~~~~~L---i~~y~k~g~~~~A~~~f~~m~~~--d~~--~~~~li~~~~~~g~~~~A~ 544 (830)
+.+..-.+.+... +- ++.. ....+. +-++.+.|+..++.+.|+.++.. .+. .--++..+|...+++++|+
T Consensus 268 d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~ 347 (822)
T PRK14574 268 DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAA 347 (822)
T ss_pred HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 3344444443331 11 2221 223333 34567889999999999999843 233 4456788999999999999
Q ss_pred HHHHHHHHcCC----CCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcC----------CCCC---cchHHHHHHHHH
Q 047408 545 ATFNDMRQAGI----EPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECN----------IEPK---LEHYACMVDLLS 606 (830)
Q Consensus 545 ~l~~~m~~~g~----~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~p~---~~~y~~lv~~l~ 606 (830)
.+|++.....- .|+.. ....|..|+..++++++|..+++.+.+... -.|+ ...+..++..+.
T Consensus 348 ~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~ 427 (822)
T PRK14574 348 PILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLV 427 (822)
T ss_pred HHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHH
Confidence 99999876431 12222 356788999999999999999999875211 0132 234556788889
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHH
Q 047408 607 RTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLR 684 (830)
Q Consensus 607 r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~ 684 (830)
..|++.+|++.++++ ...| |..++..+...++..|+...|+..++.+..++|++......++..+...|+|++|.++.
T Consensus 428 ~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 428 ALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLT 507 (822)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 999999999999998 3445 67888899999999999999999999999999999999999999999999999998887
Q ss_pred HHHHh
Q 047408 685 EKISR 689 (830)
Q Consensus 685 ~~m~~ 689 (830)
+...+
T Consensus 508 ~~l~~ 512 (822)
T PRK14574 508 DDVIS 512 (822)
T ss_pred HHHHh
Confidence 66654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-12 Score=146.11 Aligned_cols=170 Identities=18% Similarity=0.192 Sum_probs=104.7
Q ss_pred CCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHH
Q 047408 507 GVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFN 583 (830)
Q Consensus 507 g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~ 583 (830)
+..++|.++|.++. .+|...=|-+...++..|++.+|..+|.+.++... -+..+|..+...|...|.+-.|++.|+
T Consensus 626 k~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe 704 (1018)
T KOG2002|consen 626 KHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYE 704 (1018)
T ss_pred HHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHH
Confidence 34566777777554 34555666677777777888888888887777532 334456777777777788888888887
Q ss_pred HhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 047408 584 MMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPDA--TIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDN 660 (830)
Q Consensus 584 ~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~ 660 (830)
...+++.-.-+.....+|..++.++|.+.+|.+..... ...|.. +.+|-.+ ...+..+.++..++.
T Consensus 705 ~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~----------v~kkla~s~lr~~k~- 773 (1018)
T KOG2002|consen 705 NCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL----------VLKKLAESILRLEKR- 773 (1018)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH----------HHHHHHHHHHhcccc-
Confidence 77766665556777778888888888888877765443 334432 2222221 111223333333331
Q ss_pred cchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCc
Q 047408 661 TGYYVLLANVYAEAEKWEEVKKLREKISRRGLK 693 (830)
Q Consensus 661 ~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~ 693 (830)
.+=.+....+..++|.++|..|...+-+
T Consensus 774 -----t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 774 -----TLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred -----cHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 2233455566777777777777764443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=5e-14 Score=167.29 Aligned_cols=363 Identities=12% Similarity=0.025 Sum_probs=224.7
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCC--C-CeehHHHHHHHHHhcC
Q 047408 271 VTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGE--R-SVVSWTSMIAGYAREG 347 (830)
Q Consensus 271 ~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g 347 (830)
..+..++...|+++.|..++..+++.. +.+......+...+.+.|+.++|...+++... | +.. |..+...+...|
T Consensus 53 ~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g 130 (765)
T PRK10049 53 AAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAG 130 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCC
Confidence 333333344444444444444433321 12233334555555666666666666665533 2 233 555555666666
Q ss_pred ChhHHHHHHHHHHHcCCCCCcch-HHHHHHHhhccCcchhhhhHHHHHHhhcCCCch------hhHHHHHHHHH-----h
Q 047408 348 VFDGAIRLFRGMVREGIEPDVYA-ITSILHACACDGLLEIGKDVHDYIKENDMQSSL------YVSNALMDMYA-----K 415 (830)
Q Consensus 348 ~~~~A~~l~~~m~~~g~~pd~~t-~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~------~~~~~Li~~y~-----k 415 (830)
+.++|+..++++.+. .|+... +..+..++...+..+.|.+.++.+.+ .|+. .....++..+. .
T Consensus 131 ~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~ 205 (765)
T PRK10049 131 RHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSE 205 (765)
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccCh
Confidence 666666666666553 343322 23333444455555555555544332 1110 01111222221 1
Q ss_pred cCCh---HHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCcc-cccc----chhhhcchhhHHHHHHHHHHHHHh
Q 047408 416 CGSM---ADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGV-TMAC----ILPACASLAALERGREIHGYILRH 487 (830)
Q Consensus 416 ~g~~---~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~-t~~~----ll~a~~~~~~~~~a~~i~~~~~~~ 487 (830)
.+++ ++|++.++.+.... ...|+.. .+.. .+.++...++.++|...+..+.+.
T Consensus 206 ~~r~~~ad~Al~~~~~ll~~~-------------------~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~ 266 (765)
T PRK10049 206 KERYAIADRALAQYDALEALW-------------------HDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAE 266 (765)
T ss_pred hHHHHHHHHHHHHHHHHHhhc-------------------ccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Confidence 2223 45555555543210 0023321 1111 133455678999999999999887
Q ss_pred CCC-CchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCC-------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-----
Q 047408 488 GIS-ADRNVANAIVDMYVKCGVLVLARSLFDMIPAKD-------LISWTIMIAGYGMHGFGCDAIATFNDMRQAG----- 554 (830)
Q Consensus 488 g~~-~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----- 554 (830)
+-+ |+ .....+...|...|++++|...|+++...+ ...+..+..++...|++++|+++++++....
T Consensus 267 ~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~ 345 (765)
T PRK10049 267 GQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLR 345 (765)
T ss_pred CCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEe
Confidence 632 22 122335778999999999999999875332 2345667778899999999999999998742
Q ss_pred ------CCCChh---HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 047408 555 ------IEPDEV---SFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PV 623 (830)
Q Consensus 555 ------~~Pd~~---t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~ 623 (830)
-.|+.. .+..+...+...|+.++|++.++.+... .| +...+..+..++.+.|+.++|++.+++. ..
T Consensus 346 ~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~---~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 346 LYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN---APGNQGLRIDYASVLQARGWPRAAENELKKAEVL 422 (765)
T ss_pred ecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 113321 3445567788999999999999998743 45 4678889999999999999999999987 56
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcch
Q 047408 624 APD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGY 663 (830)
Q Consensus 624 ~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 663 (830)
.|| ...+..+.......|++++|+.+++++++..|+++..
T Consensus 423 ~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 423 EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 776 5677777778889999999999999999999999754
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.8e-13 Score=147.95 Aligned_cols=580 Identities=16% Similarity=0.089 Sum_probs=349.6
Q ss_pred CChHHHHHHHHHhhcCCC--Chh-hHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCccchHHHHHHHH--HhCCChHHH
Q 047408 77 GNLEKAMEVLYSSEKSKI--DTK-TYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMF--VTCGDLKEG 151 (830)
Q Consensus 77 g~~~~A~~~~~~m~~~~~--~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li~~y--~~~g~~~~A 151 (830)
..+..|..+|...-.... ++. .+...........+.+.|.+.|..+++.. |+|. ...|..+. ...|++..|
T Consensus 108 e~~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~s--p~Ni--l~LlGkA~i~ynkkdY~~a 183 (1018)
T KOG2002|consen 108 ELFDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQS--PDNI--LALLGKARIAYNKKDYRGA 183 (1018)
T ss_pred HHHHHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhC--Ccch--HHHHHHHHHHhccccHHHH
Confidence 346677777765543322 111 22221111222223577777777777754 3322 22233333 234678888
Q ss_pred HHHHhcCCC------CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHH-HhcCCCCCHHHHHHHH
Q 047408 152 RRVFNKIDN------GKVFIWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCL-AVVGNSRRVKDAHKLF 224 (830)
Q Consensus 152 ~~~f~~m~~------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~-~~~g~~~~~~~A~~lf 224 (830)
..+|..... +|+. -.+-.++.+.|+.+.|+..|.+..+. .|+.+.-...|.-+ ....+.+....+..++
T Consensus 184 l~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ralqL--dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll 259 (1018)
T KOG2002|consen 184 LKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFERALQL--DPTCVSALVALGEVDLNFNDSDSYKKGVQLL 259 (1018)
T ss_pred HHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHHHHHhc--ChhhHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 888887331 2221 12224566888888888888887763 34222111111111 1223333556666666
Q ss_pred hhCC---CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCC--CChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCC
Q 047408 225 DELS---DRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFN--VDLATMVTVLSGCANCGALMFGRAVHAFALKACFS 299 (830)
Q Consensus 225 ~~m~---~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~--pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~ 299 (830)
...- ..|++..|.|.+-|.-.|++..+..+...+...... .-...|-.+-+++-..|+++.|...+....+..-.
T Consensus 260 ~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d 339 (1018)
T KOG2002|consen 260 QRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADND 339 (1018)
T ss_pred HHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCC
Confidence 5543 468899999999999999999999999888765311 12335677788888999999999999888876544
Q ss_pred CCchHHHHHHHHhhcCCChHHHHHHHhhcCC--C-CeehHHHHHHHHHhcC----ChhHHHHHHHHHHHcCCCCCcchHH
Q 047408 300 KEISFNNTLLDMYSKCGDLDGAIRVFEKMGE--R-SVVSWTSMIAGYAREG----VFDGAIRLFRGMVREGIEPDVYAIT 372 (830)
Q Consensus 300 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g----~~~~A~~l~~~m~~~g~~pd~~t~~ 372 (830)
..+.-+-.|..+|.+.|+++.|...|+.+.. | +..+...+...|+..+ ..+.|..++.+..+.- ..|...|.
T Consensus 340 ~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l 418 (1018)
T KOG2002|consen 340 NFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWL 418 (1018)
T ss_pred CccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHH
Confidence 4344455788999999999999999999865 3 3455666666677665 3455665555554431 23444554
Q ss_pred HHHHHhhccCcchhhhhHHHHH----HhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCC-CchhHHHHHHHHHHH
Q 047408 373 SILHACACDGLLEIGKDVHDYI----KENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVK-DIVSWNTMIGALDLF 447 (830)
Q Consensus 373 ~ll~a~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~-~~~~~n~~i~al~~f 447 (830)
.+-..+- .++.......+..+ ...+-.+-+.+.|.+...+...|.+++|...|+....+ ..
T Consensus 419 ~laql~e-~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~------------- 484 (1018)
T KOG2002|consen 419 ELAQLLE-QTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLE------------- 484 (1018)
T ss_pred HHHHHHH-hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhh-------------
Confidence 4444433 34444445555443 34555577789999999999999999999999876543 00
Q ss_pred HHHHhCCCCCc-----ccccc-chhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC-
Q 047408 448 VAMLQNFEPDG-----VTMAC-ILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP- 520 (830)
Q Consensus 448 ~~m~~~~~pd~-----~t~~~-ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~- 520 (830)
.| .+|. +|..- +....-..++.+.|.+.+..+++.. +.-+..|--|.-|--..+...+|...+....
T Consensus 485 -~~----n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~ 558 (1018)
T KOG2002|consen 485 -VA----NKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALN 558 (1018)
T ss_pred -hc----CccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHh
Confidence 00 1222 12222 2222335567777777777777653 1112222222222222345566777776554
Q ss_pred --CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHc------------cCCHHHHHHHHHHh
Q 047408 521 --AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQA-GIEPDEVSFISVLYACSH------------SGLVDEGWRFFNMM 585 (830)
Q Consensus 521 --~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~Pd~~t~~~ll~a~~~------------~g~~~~a~~~~~~m 585 (830)
..|+..|+-+...|.....+..|-+-|....+. -..+|..+..+|.+.|.. .+..+.|+++|...
T Consensus 559 ~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kv 638 (1018)
T KOG2002|consen 559 IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKV 638 (1018)
T ss_pred cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHH
Confidence 446666776666777777777777766655542 123566666666665432 23456666666665
Q ss_pred HhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CCCC
Q 047408 586 RYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMMP--VAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFEL--EPDN 660 (830)
Q Consensus 586 ~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l--~p~~ 660 (830)
. ...| +...-+-+.-.|+..|++.+|..+|.+.. ...+..+|-.+...|...|++-.|.++|+..+.. .-++
T Consensus 639 L---~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~ 715 (1018)
T KOG2002|consen 639 L---RNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNR 715 (1018)
T ss_pred H---hcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 5 2334 45555666777777788888887777762 2223456777777777778888888877776642 2345
Q ss_pred cchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 661 TGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 661 ~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
+.....|+.++.+.|+|.+|.+......
T Consensus 716 ~~vl~~Lara~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 716 SEVLHYLARAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 6667777788888888887777655544
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.9e-12 Score=149.33 Aligned_cols=434 Identities=10% Similarity=0.056 Sum_probs=284.9
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCc--ccHHHHHHHHHhcCCCCCHHHHHHHHhhCCCCCcchH-HHH--HHHHHhCC
Q 047408 172 EYSKTGNFKESLYLFKKMQSLGIAADS--YTFSCVLKCLAVVGNSRRVKDAHKLFDELSDRDVVSW-NCM--ISGYIANG 246 (830)
Q Consensus 172 ~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~~~~A~~lf~~m~~~~~~~~-n~l--i~~~~~~g 246 (830)
...+.|+++.|+..|++..+. .|+. ..+ .++..+...| ..++|+..+++...|+...+ ..+ ...|...|
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G---~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAG---RDQEVIDVYERYQSSMNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcC---CcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcC
Confidence 345667777777777766653 2332 122 5555555555 46666666666655433333 222 34667778
Q ss_pred ChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHh
Q 047408 247 VAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFE 326 (830)
Q Consensus 247 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~ 326 (830)
++++|+++|+++.+. .|+ +..++..|+..|...++.++|++.++
T Consensus 117 dyd~Aiely~kaL~~--dP~----------------------------------n~~~l~gLa~~y~~~~q~~eAl~~l~ 160 (822)
T PRK14574 117 RWDQALALWQSSLKK--DPT----------------------------------NPDLISGMIMTQADAGRGGVVLKQAT 160 (822)
T ss_pred CHHHHHHHHHHHHhh--CCC----------------------------------CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 888888888888765 222 23334556677788888888888888
Q ss_pred hcCCCCeehHHHHHHHHHh--cCChhHHHHHHHHHHHcCCCCC-cchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCch
Q 047408 327 KMGERSVVSWTSMIAGYAR--EGVFDGAIRLFRGMVREGIEPD-VYAITSILHACACDGLLEIGKDVHDYIKENDMQSSL 403 (830)
Q Consensus 327 ~m~~~d~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~ 403 (830)
++...+......+..+|.. .++..+|++.++++.+. .|+ ...+..+..+..+.|-...|.++...- |+.
T Consensus 161 ~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~ 232 (822)
T PRK14574 161 ELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL--APTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNL 232 (822)
T ss_pred HhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccc
Confidence 8876443332234444444 45555688888888875 454 444566677777777777776655542 222
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHhcC--CCCCc-hhHHHHHHHHHHHHHHHhCC--CCCc-ccc----ccchhhhcchhh
Q 047408 404 YVSNALMDMYAKCGSMADAESVFNQM--PVKDI-VSWNTMIGALDLFVAMLQNF--EPDG-VTM----ACILPACASLAA 473 (830)
Q Consensus 404 ~~~~~Li~~y~k~g~~~~A~~~f~~m--~~~~~-~~~n~~i~al~~f~~m~~~~--~pd~-~t~----~~ll~a~~~~~~ 473 (830)
++-.-+... +.+.|.+..+.- ..+.. -.+..+=.|+.-+..+...- .|.. .-| .--+-++...++
T Consensus 233 f~~~~~~~l-----~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r 307 (822)
T PRK14574 233 VSAEHYRQL-----ERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQ 307 (822)
T ss_pred cCHHHHHHH-----HHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhh
Confidence 211111110 011111111110 00000 00111111455555554422 2322 211 223556778889
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCC---------ChhhHHHHHHHHHhcCChHHHH
Q 047408 474 LERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAK---------DLISWTIMIAGYGMHGFGCDAI 544 (830)
Q Consensus 474 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~---------d~~~~~~li~~~~~~g~~~~A~ 544 (830)
..++.+.++.+...|.+.-..+--++.++|...+++++|..+|..+... ++.....|.-+|...+++++|.
T Consensus 308 ~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~ 387 (822)
T PRK14574 308 TADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAY 387 (822)
T ss_pred HHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHH
Confidence 9999999999999887767778899999999999999999999987432 2333577899999999999999
Q ss_pred HHHHHHHHcCC-------------CCChhH-HHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcC
Q 047408 545 ATFNDMRQAGI-------------EPDEVS-FISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTG 609 (830)
Q Consensus 545 ~l~~~m~~~g~-------------~Pd~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g 609 (830)
.+++++.+.-. .||-.. +..+...+...|++.+|++.++.+. ...| |......+.+++...|
T Consensus 388 ~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~---~~aP~n~~l~~~~A~v~~~Rg 464 (822)
T PRK14574 388 QFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLS---STAPANQNLRIALASIYLARD 464 (822)
T ss_pred HHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHhcC
Confidence 99999997311 123333 3344567889999999999999997 4456 5788999999999999
Q ss_pred CHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcch
Q 047408 610 NLSEAYRFIEMM-PVAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGY 663 (830)
Q Consensus 610 ~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 663 (830)
+..+|++.++.. ...|+ ..+...+..+....+++++|+.+.+++++..|+++..
T Consensus 465 ~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 465 LPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred CHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 999999999876 46775 4566677777888899999999999999999999754
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.1e-10 Score=119.33 Aligned_cols=550 Identities=12% Similarity=0.068 Sum_probs=413.5
Q ss_pred cCChhHHHHHHHHHHHhCCCCCccchHHHHHHHHHhCCChHHHHHHHhcCC---CCCcchHHHHHHHHHhCCChhHHHHH
Q 047408 109 LKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNKID---NGKVFIWNLLMHEYSKTGNFKESLYL 185 (830)
Q Consensus 109 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l 185 (830)
....+.|+.+.+..++.- |.++.+|-.-...- .+...-.+|+.+.. ..++..|-+. ......+.|.-+
T Consensus 328 Lhp~d~aK~vvA~Avr~~--P~Sv~lW~kA~dLE---~~~~~K~RVlRKALe~iP~sv~LWKaA----VelE~~~daril 398 (913)
T KOG0495|consen 328 LHPPDVAKTVVANAVRFL--PTSVRLWLKAADLE---SDTKNKKRVLRKALEHIPRSVRLWKAA----VELEEPEDARIL 398 (913)
T ss_pred cCChHHHHHHHHHHHHhC--CCChhhhhhHHhhh---hHHHHHHHHHHHHHHhCCchHHHHHHH----HhccChHHHHHH
Confidence 344555666666665532 33233332222211 12222233443322 2345566543 345666778888
Q ss_pred HHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhCCChhHHHHHHHH----H
Q 047408 186 FKKMQSLGIAADSYTFSCVLKCLAVVGNSRRVKDAHKLFDELS---DRDVVSWNCMISGYIANGVAEKGLEVFKE----M 258 (830)
Q Consensus 186 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~A~~lf~~m~---~~~~~~~n~li~~~~~~g~~~~A~~l~~~----m 258 (830)
+.+..+. -|. -.-|..++++.. .++.|.+++.+.. +.+...|-+-...--++|+.+...+++.+ +
T Consensus 399 L~rAvec--cp~---s~dLwlAlarLe---tYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L 470 (913)
T KOG0495|consen 399 LERAVEC--CPQ---SMDLWLALARLE---TYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSEL 470 (913)
T ss_pred HHHHHHh--ccc---hHHHHHHHHHHH---HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 8887763 122 223445556555 4778888876654 46888998888888899999988888765 4
Q ss_pred HHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCC--chHHHHHHHHhhcCCChHHHHHHHhhcCC---CCe
Q 047408 259 LNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKACFSKE--ISFNNTLLDMYSKCGDLDGAIRVFEKMGE---RSV 333 (830)
Q Consensus 259 ~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~--~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~ 333 (830)
...|+..|...|..=..+|-..|..-....|..-++..|++.. -.+++.-.+.+.+.+.++-|+.+|....+ .+.
T Consensus 471 ~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~ 550 (913)
T KOG0495|consen 471 QANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKK 550 (913)
T ss_pred hhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchh
Confidence 5679999999998888899999999999999999988887653 35677778889999999999999987765 366
Q ss_pred ehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHH
Q 047408 334 VSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMY 413 (830)
Q Consensus 334 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y 413 (830)
..|...+..--..|..++-..+|++.... ++-....+....+..-..|++..|+.++..+.+.. +.+..+|-+-+..-
T Consensus 551 slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle 628 (913)
T KOG0495|consen 551 SLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLE 628 (913)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHh
Confidence 77888777777789999999999999875 33344445555556667899999999999999886 34778899999999
Q ss_pred HhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCch
Q 047408 414 AKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADR 493 (830)
Q Consensus 414 ~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~ 493 (830)
....+++.|+.+|.+.... .|+...|.--+.---.++..++|+++.+..++. ++.-.
T Consensus 629 ~en~e~eraR~llakar~~----------------------sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~ 685 (913)
T KOG0495|consen 629 FENDELERARDLLAKARSI----------------------SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFH 685 (913)
T ss_pred hccccHHHHHHHHHHHhcc----------------------CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchH
Confidence 9999999999999887654 355555555555555678899999999888875 34456
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHhhhCCC--C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 047408 494 NVANAIVDMYVKCGVLVLARSLFDMIPA--K-DLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACS 570 (830)
Q Consensus 494 ~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~ 570 (830)
..|-.+.+.|-+.++++.|++.|..-.+ | .+..|-.+...--+.|+.-+|..+|++.+..+ +-|..-|...+..=.
T Consensus 686 Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~El 764 (913)
T KOG0495|consen 686 KLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMEL 764 (913)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHH
Confidence 7888899999999999999999987653 3 55689988888889999999999999998753 234457888899999
Q ss_pred ccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047408 571 HSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVA 650 (830)
Q Consensus 571 ~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 650 (830)
+.|..++|..+.....++ .+.+...|..-|.+..+.++-..+.+.+++- +.|+.+.-+....+.....++.|+.-|
T Consensus 765 R~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkc--e~dphVllaia~lfw~e~k~~kar~Wf 840 (913)
T KOG0495|consen 765 RAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHDPHVLLAIAKLFWSEKKIEKAREWF 840 (913)
T ss_pred HcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhc--cCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888764 4445778888999999999988888877776 455666666777778888999999999
Q ss_pred HHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCcCCCceeEEEECCEE
Q 047408 651 EHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIEIKGKV 707 (830)
Q Consensus 651 ~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~~~swi~~~~~~ 707 (830)
++++..+|++..++..+-..+...|.-++-.++++.... -.|.-|-.|+.+...+
T Consensus 841 ~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~--~EP~hG~~W~avSK~i 895 (913)
T KOG0495|consen 841 ERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET--AEPTHGELWQAVSKDI 895 (913)
T ss_pred HHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc--cCCCCCcHHHHHhhhH
Confidence 999999999999999999999999999999999987775 3455676786654433
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.4e-12 Score=129.23 Aligned_cols=361 Identities=16% Similarity=0.162 Sum_probs=241.1
Q ss_pred HHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCc
Q 047408 223 LFDELSDRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEI 302 (830)
Q Consensus 223 lf~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~ 302 (830)
++-+..++...++..||.|+|+--..+.|.+++++-.....+.+..+|+.+|.+.+- ..++.+...|+...+.||.
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNL 273 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCch
Confidence 444444556679999999999999999999999999999899999999999988653 3458999999999999999
Q ss_pred hHHHHHHHHhhcCCChHHHHHHH----hhcC----CCCeehHHHHHHHHHhcCChhH-HHHHHHHHHH----cCCCC---
Q 047408 303 SFNNTLLDMYSKCGDLDGAIRVF----EKMG----ERSVVSWTSMIAGYAREGVFDG-AIRLFRGMVR----EGIEP--- 366 (830)
Q Consensus 303 ~~~~~Li~~y~k~g~~~~A~~~f----~~m~----~~d~~~~~~li~~~~~~g~~~~-A~~l~~~m~~----~g~~p--- 366 (830)
+++|+++...++.|+++.|++.+ .+|+ +|...+|..+|..+++.+++.+ |..+..+.+. +.++|
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 99999999999999998876654 4453 4899999999999999988744 4555555443 22333
Q ss_pred -CcchHHHHHHHhhccCcchhhhhHHHHHHhhc----CCCc---hhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHH
Q 047408 367 -DVYAITSILHACACDGLLEIGKDVHDYIKEND----MQSS---LYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWN 438 (830)
Q Consensus 367 -d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g----~~~~---~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n 438 (830)
|..-|.+.+..|.+..+.+.|.++++...... +.++ .+-|..+.+..+....++.-...++.|.-.-.
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y---- 429 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY---- 429 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee----
Confidence 34557888999999999999999998775431 2222 23445677777777888888888777754322
Q ss_pred HHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhh
Q 047408 439 TMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDM 518 (830)
Q Consensus 439 ~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 518 (830)
-|+..+...+++|....+.++...+++..++..|...+....--+...+++..
T Consensus 430 ----------------~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k----------- 482 (625)
T KOG4422|consen 430 ----------------FPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK----------- 482 (625)
T ss_pred ----------------cCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC-----------
Confidence 48888999999999999999999999999998885544433333322222221
Q ss_pred CCCCChhhHHHHHHHHHhc-CChHH-HHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcc
Q 047408 519 IPAKDLISWTIMIAGYGMH-GFGCD-AIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLE 596 (830)
Q Consensus 519 m~~~d~~~~~~li~~~~~~-g~~~~-A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 596 (830)
+.|+...-..+-...++. -++.+ ....-.+|.+....|.. .+.++.-+.+.|..++|+++|....+++.-.|...
T Consensus 483 -~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~--l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p 559 (625)
T KOG4422|consen 483 -LHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATS--LNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSP 559 (625)
T ss_pred -CCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhH--HHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCc
Confidence 112211111111111100 01111 11222344443343433 34444456677777888777777755545555555
Q ss_pred hHHHHH---HHHHhcCCHHHHHHHHHhC
Q 047408 597 HYACMV---DLLSRTGNLSEAYRFIEMM 621 (830)
Q Consensus 597 ~y~~lv---~~l~r~g~~~eA~~~~~~m 621 (830)
..++|+ |.-.+......|...++-|
T Consensus 560 ~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 560 LLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred chhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 555443 3333444555555555444
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.4e-11 Score=131.81 Aligned_cols=600 Identities=13% Similarity=0.123 Sum_probs=362.6
Q ss_pred HhcCChHHHHHHHHHhhcCCCCh-hhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCccchHHHHHHHHHhCCChHHHH
Q 047408 74 CEVGNLEKAMEVLYSSEKSKIDT-KTYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGR 152 (830)
Q Consensus 74 ~~~g~~~~A~~~~~~m~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~ 152 (830)
...|+.++|.+++.+..+..|.. ..|.+|...+-..|+.+.+... .++...+.|.|...|-.+-....+.|.++.|+
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~--~llAAHL~p~d~e~W~~ladls~~~~~i~qA~ 227 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNF--WLLAAHLNPKDYELWKRLADLSEQLGNINQAR 227 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHH--HHHHHhcCCCChHHHHHHHHHHHhcccHHHHH
Confidence 33499999999999999887765 4999999999999988876654 45566677877899999999999999999999
Q ss_pred HHHhcCCCCCcchHHH---HHHHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHH----HHHHHhcCCCCCHHHHHHHHh
Q 047408 153 RVFNKIDNGKVFIWNL---LMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCV----LKCLAVVGNSRRVKDAHKLFD 225 (830)
Q Consensus 153 ~~f~~m~~~~~~~~~~---li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l----l~~~~~~g~~~~~~~A~~lf~ 225 (830)
-.|.+..+.++.-|-. =+.-|-+.|+...|..-|.++.....+.|..-+-.+ ++.+...++ -+.|.+.++
T Consensus 228 ~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~---~e~a~~~le 304 (895)
T KOG2076|consen 228 YCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNE---RERAAKALE 304 (895)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhH---HHHHHHHHH
Confidence 9999876554443433 356788899999999999999876432232333333 444445553 477777777
Q ss_pred hCCC-----CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh----------------------hhHH----HHH
Q 047408 226 ELSD-----RDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDL----------------------ATMV----TVL 274 (830)
Q Consensus 226 ~m~~-----~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----------------------~t~~----~ll 274 (830)
.... -+...+|.++..|.+...++.|......+......+|. ..|. -+.
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ 384 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLM 384 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHh
Confidence 6543 34567899999999999999999999988872222221 1111 122
Q ss_pred HHHhcCCChHHHHHHHHHHHHhC--CCCCchHHHHHHHHhhcCCChHHHHHHHhhcCC----CCeehHHHHHHHHHhcCC
Q 047408 275 SGCANCGALMFGRAVHAFALKAC--FSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGE----RSVVSWTSMIAGYAREGV 348 (830)
Q Consensus 275 ~a~~~~~~~~~~~~l~~~~~~~g--~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~----~d~~~~~~li~~~~~~g~ 348 (830)
-+..+....+....+.....+.. +..++..+.-+.++|...|+..+|.++|..+.. .+...|--+...|...|.
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 22345556666666766676666 455677888999999999999999999999865 367789999999999999
Q ss_pred hhHHHHHHHHHHHcCCCCCcc-hHHHHHHHhhccCcchhhhhHHHHHH--------hhcCCCchhhHHHHHHHHHhcCCh
Q 047408 349 FDGAIRLFRGMVREGIEPDVY-AITSILHACACDGLLEIGKDVHDYIK--------ENDMQSSLYVSNALMDMYAKCGSM 419 (830)
Q Consensus 349 ~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~~~~~~a~~~~~~~~--------~~g~~~~~~~~~~Li~~y~k~g~~ 419 (830)
.++|++.|...+.. .|+.. .-.+|-..+.+.|+.++|.+.+..+. ..+..|+....--..+.|.+.|+.
T Consensus 465 ~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 465 YEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKR 542 (895)
T ss_pred HHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhH
Confidence 99999999999874 55543 33445556778899999999988854 334566666777778888899988
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCC----CCCccccccchhhhcchhh---HHHHHHHH---HHHHHhCC
Q 047408 420 ADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNF----EPDGVTMACILPACASLAA---LERGREIH---GYILRHGI 489 (830)
Q Consensus 420 ~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~----~pd~~t~~~ll~a~~~~~~---~~~a~~i~---~~~~~~g~ 489 (830)
++-..+-..|..+ .....++.--..=+++.... +-...+...+..+-.+.++ .+.+..-. ......|+
T Consensus 543 E~fi~t~~~Lv~~--~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~L 620 (895)
T KOG2076|consen 543 EEFINTASTLVDD--FLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGL 620 (895)
T ss_pred HHHHHHHHHHHHH--HHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccC
Confidence 7744433332211 00000000000000000000 1111111112222211111 11111111 11111222
Q ss_pred CCch--hHHhHHHHHHHhcCCHHHHHHHhhhCCCCCh---------hhHHHHHHHHHhcCChHHHHHHHHHHHHc---CC
Q 047408 490 SADR--NVANAIVDMYVKCGVLVLARSLFDMIPAKDL---------ISWTIMIAGYGMHGFGCDAIATFNDMRQA---GI 555 (830)
Q Consensus 490 ~~~~--~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~---------~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~ 555 (830)
..+. ..+.-+|...+|-|++++|..+...+..-++ ..-..++.+....+++.+|.+.++.|... ..
T Consensus 621 siddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~ 700 (895)
T KOG2076|consen 621 SIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYL 700 (895)
T ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhh
Confidence 2221 2334455566666666666666554432111 11233444555556666666666665542 11
Q ss_pred CCChhH-HHHHHHHHHc-----------------------------------cCCHHHHHHHHHHhHhhcCCCCCcchHH
Q 047408 556 EPDEVS-FISVLYACSH-----------------------------------SGLVDEGWRFFNMMRYECNIEPKLEHYA 599 (830)
Q Consensus 556 ~Pd~~t-~~~ll~a~~~-----------------------------------~g~~~~a~~~~~~m~~~~~~~p~~~~y~ 599 (830)
.|...+ |+..++..+. .+.+..|++++-... ...|+...++
T Consensus 701 ~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~---~~~pd~Pl~n 777 (895)
T KOG2076|consen 701 DVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAF---RQNPDSPLIN 777 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHH---HhCCCCcHHH
Confidence 233222 2212222222 334455555443332 3345533333
Q ss_pred -HHHHHHH----------hcCCHHHHHHHHHhC---CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcc--
Q 047408 600 -CMVDLLS----------RTGNLSEAYRFIEMM---PVA-PDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTG-- 662 (830)
Q Consensus 600 -~lv~~l~----------r~g~~~eA~~~~~~m---~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~-- 662 (830)
||.-++. |.-.+-.+..++++. ... -...++-.+..+|..-|-+-.|...+++++++.|.+.+
T Consensus 778 l~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~ 857 (895)
T KOG2076|consen 778 LCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDP 857 (895)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccc
Confidence 2222211 112233444444332 111 01234445778888888888999999999998765432
Q ss_pred ----------hHHHHHHHHhhhcCHHHHHHHHH
Q 047408 663 ----------YYVLLANVYAEAEKWEEVKKLRE 685 (830)
Q Consensus 663 ----------~~~~l~~~y~~~g~~~~A~~~~~ 685 (830)
+-..|.-+|-..|+.+-|..+.+
T Consensus 858 ~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~ 890 (895)
T KOG2076|consen 858 KEDNYDLRKEAAYNLHLIYKKSGNMQLARQILE 890 (895)
T ss_pred cCCcccHHHHHHhhhhhhhccCCcHHHHHHHHH
Confidence 34567778999999998888754
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-11 Score=125.45 Aligned_cols=432 Identities=11% Similarity=0.096 Sum_probs=286.8
Q ss_pred CCcchhHHHHHHHhcCChHHHHHHHHHhhcCCCChh--hHHHHHHH--HhccCChhH-HHHHHHHHHHhCCCCCccchHH
Q 047408 62 KTKNYNAEIGRFCEVGNLEKAMEVLYSSEKSKIDTK--TYCSILQL--CADLKSLED-GKKVHSIICESGIVIDDGVLGS 136 (830)
Q Consensus 62 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~--~~~~ll~~--~~~~~~~~~-a~~~~~~~~~~g~~~~~~~~~~ 136 (830)
.+.+-|.++.. ...|...++.-+|+.|...+++.+ .-..|++. |....++.- -.+.|-.+.+.|-.. ...|
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S--~~sW- 190 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDS--TSSW- 190 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccc--cccc-
Confidence 34556666554 556888999999999998876653 33344432 222223222 223344444444222 3333
Q ss_pred HHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCC
Q 047408 137 KLVFMFVTCGDLKEGRRVFNKIDNGKVFIWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRR 216 (830)
Q Consensus 137 ~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 216 (830)
|.|++.+ ++-+...+...++..||.|+|+--..+.|.+++++-.....+.+..+||.+|.+-+-..
T Consensus 191 -------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~---- 256 (625)
T KOG4422|consen 191 -------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV---- 256 (625)
T ss_pred -------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----
Confidence 5666655 44444455668999999999999999999999999999888999999999999876543
Q ss_pred HHHHHHHHhhCC----CCCcchHHHHHHHHHhCCChhH----HHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHH-HH
Q 047408 217 VKDAHKLFDELS----DRDVVSWNCMISGYIANGVAEK----GLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMF-GR 287 (830)
Q Consensus 217 ~~~A~~lf~~m~----~~~~~~~n~li~~~~~~g~~~~----A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~-~~ 287 (830)
-.++..+|. .||..|+|+++++..+.|+++. |++++.+|++-|+.|.-.+|-.+|.-+.+.++... +.
T Consensus 257 ---~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as 333 (625)
T KOG4422|consen 257 ---GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVAS 333 (625)
T ss_pred ---cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhH
Confidence 256666665 5999999999999999998764 67888999999999999999999998888777643 33
Q ss_pred HHHHHHHHh--C--C----CCCchHHHHHHHHhhcCCChHHHHHHHhhcCCC-----------CeehHHHHHHHHHhcCC
Q 047408 288 AVHAFALKA--C--F----SKEISFNNTLLDMYSKCGDLDGAIRVFEKMGER-----------SVVSWTSMIAGYAREGV 348 (830)
Q Consensus 288 ~l~~~~~~~--g--~----~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~-----------d~~~~~~li~~~~~~g~ 348 (830)
.+...+... | + +.|...+.+-++.+....+.+-|.++-.-.... ..+-|..+....++...
T Consensus 334 ~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es 413 (625)
T KOG4422|consen 334 SWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMES 413 (625)
T ss_pred HHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHH
Confidence 344444321 1 2 234455566677777888999998887655432 12346667788888899
Q ss_pred hhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhc
Q 047408 349 FDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQ 428 (830)
Q Consensus 349 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 428 (830)
.+.-+..|..|.-.-+-|+..+...+++|....+.++....++..++..|...+....--++..+++..
T Consensus 414 ~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k----------- 482 (625)
T KOG4422|consen 414 IDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK----------- 482 (625)
T ss_pred HHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC-----------
Confidence 999999999998888889999999999999999999999999998888874443333222222222211
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHhCCCCCcc---ccccchhhhcchhhHHHHH-HHHHHHHHhCCCCchhHHhHHHHHHH
Q 047408 429 MPVKDIVSWNTMIGALDLFVAMLQNFEPDGV---TMACILPACASLAALERGR-EIHGYILRHGISADRNVANAIVDMYV 504 (830)
Q Consensus 429 m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~---t~~~ll~a~~~~~~~~~a~-~i~~~~~~~g~~~~~~~~~~Li~~y~ 504 (830)
+ .|+.. -+.....-|+ .++.++- .--.++.+. .......+.+.-.+.
T Consensus 483 -~------------------------hp~tp~r~Ql~~~~ak~a--ad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~ 533 (625)
T KOG4422|consen 483 -L------------------------HPLTPEREQLQVAFAKCA--ADIKEAYESQPIRQRAQ--DWPATSLNCIAILLL 533 (625)
T ss_pred -C------------------------CCCChHHHHHHHHHHHHH--HHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHH
Confidence 0 12211 1222222121 1111111 112223333 344556677777889
Q ss_pred hcCCHHHHHHHhhhCC-C----CChhhHHHHHH---HHHhcCChHHHHHHHHHHHHcC
Q 047408 505 KCGVLVLARSLFDMIP-A----KDLISWTIMIA---GYGMHGFGCDAIATFNDMRQAG 554 (830)
Q Consensus 505 k~g~~~~A~~~f~~m~-~----~d~~~~~~li~---~~~~~g~~~~A~~l~~~m~~~g 554 (830)
+.|+.++|.++|.-+. + |.....|+|+. .-.+...+..|+..++-|...+
T Consensus 534 R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 534 RAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 9999999999998763 2 23345665553 4445667777777777776543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.9e-12 Score=129.25 Aligned_cols=203 Identities=13% Similarity=0.146 Sum_probs=166.2
Q ss_pred hcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHH
Q 047408 468 CASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAI 544 (830)
Q Consensus 468 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~ 544 (830)
....|++++|.+.+.+++...-......|| +.-.|-+.|++++|.+.|-++. ..++...-.+.+.|-...+..+|+
T Consensus 500 ~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 500 AFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred eeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHH
Confidence 345689999999999988765444444444 3445788999999999997654 456667777888999999999999
Q ss_pred HHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-
Q 047408 545 ATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM- 621 (830)
Q Consensus 545 ~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m- 621 (830)
+++.+... +-|+.. .+..|...|-+.|+-.+|.+++-. .|..-| ++++..-|..-|....-+++|+..|++.
T Consensus 579 e~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~yd---syryfp~nie~iewl~ayyidtqf~ekai~y~ekaa 653 (840)
T KOG2003|consen 579 ELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYD---SYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA 653 (840)
T ss_pred HHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhh---cccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99988766 566655 667777889999999999987754 334445 6888888888899999999999999997
Q ss_pred CCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcC
Q 047408 622 PVAPDATIWGSLLCGC-RIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEK 676 (830)
Q Consensus 622 ~~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 676 (830)
-++|+.+-|.-++..| ++.|+++.|...++.....-|++....-.|+.+....|.
T Consensus 654 liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 654 LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 5799999999999887 778999999999999999999999888888888777764
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.2e-11 Score=132.56 Aligned_cols=511 Identities=12% Similarity=0.043 Sum_probs=277.8
Q ss_pred HHHHhhcCCCChh--hHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCccchHHHHHHHHHhCCChHHHHHHHhcCCCCC
Q 047408 85 VLYSSEKSKIDTK--TYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNKIDNGK 162 (830)
Q Consensus 85 ~~~~m~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~ 162 (830)
++-.+...|+.|+ ||.+++..|+..|+.+.|. ++..|.-..+... ..+++.++......++.+.+. +|.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~-e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVR-EGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccccccc-chhHHHHHhcccccccccCCC-------CCc
Confidence 3445666677664 8999999999999999998 8888877766666 788899999988888877765 677
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHH-HH-------HcCCCCCcccHHHHHHHHH--------------hcCCCCCHHHH
Q 047408 163 VFIWNLLMHEYSKTGNFKESLYLFKK-MQ-------SLGIAADSYTFSCVLKCLA--------------VVGNSRRVKDA 220 (830)
Q Consensus 163 ~~~~~~li~~~~~~g~~~~A~~l~~~-m~-------~~g~~p~~~t~~~ll~~~~--------------~~g~~~~~~~A 220 (830)
..+|+.|..+|.+.|+... ++..++ |. ..|+..-...+-..+.+|- ..| -.+.+
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eg---lwaql 158 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEG---LWAQL 158 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHH---HHHHH
Confidence 7899999999999999765 333322 21 1232211111111111111 001 11222
Q ss_pred HHHHhhCC----------------------------------CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 047408 221 HKLFDELS----------------------------------DRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVD 266 (830)
Q Consensus 221 ~~lf~~m~----------------------------------~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 266 (830)
.++...+| .++..++.+++..-..+|+.+.|..++.+|.+.|+..+
T Consensus 159 lkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir 238 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR 238 (1088)
T ss_pred HHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc
Confidence 22222222 25667777777777778888888888888888888777
Q ss_pred hhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCCCCeehHHHHHHHHHhc
Q 047408 267 LATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYARE 346 (830)
Q Consensus 267 ~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~ 346 (830)
..-|..+|-+ .++......+..-+...|+.|+..++..-+-...++|....+....+.-..-....+..+.+|...+
T Consensus 239 ~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~ 315 (1088)
T KOG4318|consen 239 AHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLAN 315 (1088)
T ss_pred cccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhH
Confidence 7777777655 5666667777777777788887777776665555555433222211100000111222222221111
Q ss_pred CChh-----HHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcC---CCchhhHHHHHHHHHhcCC
Q 047408 347 GVFD-----GAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDM---QSSLYVSNALMDMYAKCGS 418 (830)
Q Consensus 347 g~~~-----~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~---~~~~~~~~~Li~~y~k~g~ 418 (830)
...+ -.+..+++..-.|+.-....| ++..-....|.-+...++-+.+..--+ ..++..+..++.-|.+.-+
T Consensus 316 k~l~~nl~~~v~~s~k~~fLlg~d~~~aiw-s~c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e 394 (1088)
T KOG4318|consen 316 KRLRQNLRKSVIGSTKKLFLLGTDILEAIW-SMCEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIE 394 (1088)
T ss_pred HHHHHHHHHHHHHHhhHHHHhccccchHHH-HHHHHHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHH
Confidence 1111 112222222222332222122 122222234555555555555432211 1223334444444433211
Q ss_pred ------hHHHHHHHhcCC-CCCchhHHHHHH------HHHHHHHHHhCC------------CCCccccccchhhhcchhh
Q 047408 419 ------MADAESVFNQMP-VKDIVSWNTMIG------ALDLFVAMLQNF------------EPDGVTMACILPACASLAA 473 (830)
Q Consensus 419 ------~~~A~~~f~~m~-~~~~~~~n~~i~------al~~f~~m~~~~------------~pd~~t~~~ll~a~~~~~~ 473 (830)
+..|.+.+..-. ..++.--.-+.. ++.-........ .+-...-..++..|.+.-+
T Consensus 395 ~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n 474 (1088)
T KOG4318|consen 395 RHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYN 474 (1088)
T ss_pred hhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 111111110000 000000000000 111111110000 0111122344455555555
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCCh------hhHHHHHHHHHhcCChHHHHHHH
Q 047408 474 LERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDL------ISWTIMIAGYGMHGFGCDAIATF 547 (830)
Q Consensus 474 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~------~~~~~li~~~~~~g~~~~A~~l~ 547 (830)
..++.+.-+.....-+ ...|..||+......++++|....+++..+|. .-+..+...+.+++....+..++
T Consensus 475 ~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL 551 (1088)
T KOG4318|consen 475 KLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTIL 551 (1088)
T ss_pred HHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHH
Confidence 5555544433333222 26788899999999999999999998887654 45777888889999999999999
Q ss_pred HHHHHcCC-CCC-hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHh
Q 047408 548 NDMRQAGI-EPD-EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEM 620 (830)
Q Consensus 548 ~~m~~~g~-~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~ 620 (830)
++|.+.-. .|+ ..++.-+++.-...|..+.-.+.++-+. .+|+.-+ .-++....+.++...|.+..+.
T Consensus 552 ~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lv-slgl~et----gPl~~vhLrkdd~s~a~ea~e~ 621 (1088)
T KOG4318|consen 552 YEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILV-SLGLSET----GPLWMVHLRKDDQSAAQEAPEP 621 (1088)
T ss_pred hhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHH-Hhhhhhc----ccceEEEeeccchhhhhhcchH
Confidence 99987422 333 3467778888888888888888877765 3344331 3344445566777666665544
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.8e-13 Score=143.27 Aligned_cols=256 Identities=16% Similarity=0.170 Sum_probs=113.2
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchh-hhcchhhHHHHHHHHHHHHH
Q 047408 408 ALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILP-ACASLAALERGREIHGYILR 486 (830)
Q Consensus 408 ~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~-a~~~~~~~~~a~~i~~~~~~ 486 (830)
.+..++.+.|++++|.+++++...... +|+...|-.++. .+-..++.+.|.+.+..+.+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~--------------------~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~ 72 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIA--------------------PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLA 72 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccc--------------------ccccccccccccccccccccccccccccccccc
Confidence 567888999999999999965433221 255555555444 44578899999999999988
Q ss_pred hCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhHHH
Q 047408 487 HGISADRNVANAIVDMYVKCGVLVLARSLFDMIP--AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAG-IEPDEVSFI 563 (830)
Q Consensus 487 ~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~Pd~~t~~ 563 (830)
.+- .++..+..++.. ...+++++|.+++...- .++...|..++..+.+.|+++++.+++++..... .+++...|.
T Consensus 73 ~~~-~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 150 (280)
T PF13429_consen 73 SDK-ANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWL 150 (280)
T ss_dssp -----------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHH
T ss_pred ccc-cccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHH
Confidence 763 367778888887 79999999999988763 4567788899999999999999999999987643 234555677
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc
Q 047408 564 SVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM--PVAPDATIWGSLLCGCRIH 640 (830)
Q Consensus 564 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~ 640 (830)
.+...+.+.|+.++|.+.++... ...|+ ......++.++...|+.+++.++++.. ..+.|+..|..+..++...
T Consensus 151 ~~a~~~~~~G~~~~A~~~~~~al---~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~l 227 (280)
T PF13429_consen 151 ALAEIYEQLGDPDKALRDYRKAL---ELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQL 227 (280)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHH---HH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH---HcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccc
Confidence 77788899999999999999987 45675 777889999999999999988888776 1234667899999999999
Q ss_pred CCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 641 HEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 641 g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
|+.++|...++++.+..|+|+.....+++++...|+.++|.++++..-
T Consensus 228 g~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 228 GRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999987653
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.43 E-value=4e-08 Score=105.27 Aligned_cols=490 Identities=14% Similarity=0.108 Sum_probs=295.2
Q ss_pred HHhccCChhHHHHHHHHHHHhCCCCCccchHHHHHHHHHhCCChHHHHHHHhcCC---CCCcchHHHHHHHHHhCCChhH
Q 047408 105 LCADLKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNKID---NGKVFIWNLLMHEYSKTGNFKE 181 (830)
Q Consensus 105 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~ 181 (830)
+.....+.+.|+.++.+..+.- |... -|.-+|++..-++.|++++.+.. ..+...|-+-..---.+|+.+.
T Consensus 385 aAVelE~~~darilL~rAvecc--p~s~----dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~m 458 (913)
T KOG0495|consen 385 AAVELEEPEDARILLERAVECC--PQSM----DLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDM 458 (913)
T ss_pred HHHhccChHHHHHHHHHHHHhc--cchH----HHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHH
Confidence 3344445555666666555532 2211 23334444455566666655433 3355556555544455666666
Q ss_pred HHHHHHH----HHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHH
Q 047408 182 SLYLFKK----MQSLGIAADSYTFSCVLKCLAVVGNSRRVKDAHKLFDELSDRDVVSWNCMISGYIANGVAEKGLEVFKE 257 (830)
Q Consensus 182 A~~l~~~----m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~A~~lf~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~ 257 (830)
..++.++ +...|+..+...|-.=-..| -..|..-.+..+...
T Consensus 459 v~kii~rgl~~L~~ngv~i~rdqWl~eAe~~----------------------------------e~agsv~TcQAIi~a 504 (913)
T KOG0495|consen 459 VEKIIDRGLSELQANGVEINRDQWLKEAEAC----------------------------------EDAGSVITCQAIIRA 504 (913)
T ss_pred HHHHHHHHHHHHhhcceeecHHHHHHHHHHH----------------------------------hhcCChhhHHHHHHH
Confidence 5555544 22345444444433333333 223333333333333
Q ss_pred HHHCCCCC--ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCC---CC
Q 047408 258 MLNLGFNV--DLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGE---RS 332 (830)
Q Consensus 258 m~~~g~~p--d~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d 332 (830)
...-|+.- -..|+...-..|.+.+.++-++.++...++. ++.+..+|...+..=-..|..++-..+|++... +.
T Consensus 505 vigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pka 583 (913)
T KOG0495|consen 505 VIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKA 583 (913)
T ss_pred HHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcc
Confidence 33333322 1235555556666666666666666666654 344555555555555555666666666666543 24
Q ss_pred eehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHH
Q 047408 333 VVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDM 412 (830)
Q Consensus 333 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 412 (830)
.+.|-....-+-..|+...|..++.+..+.... +...+...+..-.....++.|+.++...... .++..+|.--+..
T Consensus 584 e~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~ 660 (913)
T KOG0495|consen 584 EILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANL 660 (913)
T ss_pred hhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHH
Confidence 455666666666667777777776666654221 3445555556666666677777777666543 3555566555555
Q ss_pred HHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCcc-ccccchhhhcchhhHHHHHHHHHHHHHhCCCC
Q 047408 413 YAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGV-TMACILPACASLAALERGREIHGYILRHGISA 491 (830)
Q Consensus 413 y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~ 491 (830)
---.+..++|.+++++..+. -|+-. .|..+-..+-+.++++.|+..+..=.+. ++.
T Consensus 661 er~ld~~eeA~rllEe~lk~----------------------fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~ 717 (913)
T KOG0495|consen 661 ERYLDNVEEALRLLEEALKS----------------------FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPN 717 (913)
T ss_pred HHHhhhHHHHHHHHHHHHHh----------------------CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCC
Confidence 55666777777777654332 12221 2222333344455555555555433332 244
Q ss_pred chhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 047408 492 DRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYA 568 (830)
Q Consensus 492 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a 568 (830)
.+..|-.|...--+.|.+-.|+.+|++.. .+|...|-..|..-.++|+.+.|..+..+.+++ .+-+..-+.--|..
T Consensus 718 ~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~l 796 (913)
T KOG0495|consen 718 SIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWL 796 (913)
T ss_pred CchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHh
Confidence 57788888889999999999999999765 347789999999999999999999999888875 33333445555555
Q ss_pred HHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHH
Q 047408 569 CSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPDA-TIWGSLLCGCRIHHEVKLA 646 (830)
Q Consensus 569 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a 646 (830)
.-+.++-......+. ..+-|....-.+..++-...++++|.+.|.+. ...||. .+|.-+..-+..||.-+.-
T Consensus 797 e~~~~rkTks~DALk------kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~ 870 (913)
T KOG0495|consen 797 EPRPQRKTKSIDALK------KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQ 870 (913)
T ss_pred ccCcccchHHHHHHH------hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHH
Confidence 555555333333332 23345566677778888889999999999886 667764 7899999999999999999
Q ss_pred HHHHHHHhccCCCCcchHHHHH
Q 047408 647 EKVAEHVFELEPDNTGYYVLLA 668 (830)
Q Consensus 647 ~~~~~~~~~l~p~~~~~~~~l~ 668 (830)
..++.+...-+|.+...+...+
T Consensus 871 kev~~~c~~~EP~hG~~W~avS 892 (913)
T KOG0495|consen 871 KEVLKKCETAEPTHGELWQAVS 892 (913)
T ss_pred HHHHHHHhccCCCCCcHHHHHh
Confidence 9999999999999876655443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.9e-10 Score=114.69 Aligned_cols=345 Identities=15% Similarity=0.114 Sum_probs=246.1
Q ss_pred HHhhcCCChHHHHHHHhhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchH--HHHHHHhhccCcchhh
Q 047408 310 DMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAI--TSILHACACDGLLEIG 387 (830)
Q Consensus 310 ~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~--~~ll~a~~~~~~~~~a 387 (830)
-.+-+.|....|+..|.....+-+..|.+.+...--.-+.+.+..+ . .|...|..-+ -.+..++......+++
T Consensus 172 vv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l----~-~~l~~~~h~M~~~F~~~a~~el~q~~e~ 246 (559)
T KOG1155|consen 172 VVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSIL----V-VGLPSDMHWMKKFFLKKAYQELHQHEEA 246 (559)
T ss_pred HHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHH----H-hcCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 3455667888888888877665556666655433222222222211 1 1222222222 1234466666677778
Q ss_pred hhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhh
Q 047408 388 KDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPA 467 (830)
Q Consensus 388 ~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a 467 (830)
.+=.......|++.+...-+-...++-...++|.|+.+|+++.+.|+.- -.|..||+.+|-.
T Consensus 247 ~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYR------------------l~dmdlySN~LYv 308 (559)
T KOG1155|consen 247 LQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYR------------------LDDMDLYSNVLYV 308 (559)
T ss_pred HHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc------------------chhHHHHhHHHHH
Confidence 8878888888888777766666667778889999999999988766431 1344566655544
Q ss_pred hcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHH
Q 047408 468 CASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAI 544 (830)
Q Consensus 468 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~ 544 (830)
-.....+.---+....+- .--+.+...+.+-|+-.++.++|...|++.. ++-...|+-|..-|....+...|+
T Consensus 309 ~~~~skLs~LA~~v~~id----KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi 384 (559)
T KOG1155|consen 309 KNDKSKLSYLAQNVSNID----KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAI 384 (559)
T ss_pred HhhhHHHHHHHHHHHHhc----cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHH
Confidence 333222221111111111 1234556677788999999999999999765 445678999999999999999999
Q ss_pred HHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhCC
Q 047408 545 ATFNDMRQAGIEP-DEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMMP 622 (830)
Q Consensus 545 ~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m~ 622 (830)
+-|+..++ +.| |...|-+|..+|.-.++..=|+-+|+... .++| |...|.+|.+.|.+.++++||++-|+..-
T Consensus 385 ~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai 459 (559)
T KOG1155|consen 385 ESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL---ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAI 459 (559)
T ss_pred HHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH---hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 99999998 555 45589999999999999999999999876 6777 58899999999999999999999999872
Q ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-------cCCCCcchHHHHHHHHhhhcCHHHHHHHHHH
Q 047408 623 --VAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFE-------LEPDNTGYYVLLANVYAEAEKWEEVKKLREK 686 (830)
Q Consensus 623 --~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-------l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 686 (830)
-..+...+..|...+...++.++|...+++-++ .+|+-..+-.-|++-+.+.++|++|...-..
T Consensus 460 ~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 460 LLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred hccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 233458889999999999999999999998876 4454455566789999999999999886443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.7e-11 Score=130.30 Aligned_cols=247 Identities=14% Similarity=0.124 Sum_probs=196.4
Q ss_pred cccccchhhhcchhhHHHHHHHHHHHHHhCC--CCchhHHhHHHHHHHhcCCHH-HHHHHhhhCCCCChhhHHHHHHHHH
Q 047408 459 VTMACILPACASLAALERGREIHGYILRHGI--SADRNVANAIVDMYVKCGVLV-LARSLFDMIPAKDLISWTIMIAGYG 535 (830)
Q Consensus 459 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~--~~~~~~~~~Li~~y~k~g~~~-~A~~~f~~m~~~d~~~~~~li~~~~ 535 (830)
.....+..+|..+++.++++.+|+.+.+..- -.+..+|.+.+--+-+.=.+. -|..+.+. ..-.+.+|-++.+.|.
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~-~~~sPesWca~GNcfS 432 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDT-DPNSPESWCALGNCFS 432 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhh-CCCCcHHHHHhcchhh
Confidence 4556678899999999999999999987531 225667776664433322222 13333333 2346789999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHH---HHHHHhcCCH
Q 047408 536 MHGFGCDAIATFNDMRQAGIEP-DEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACM---VDLLSRTGNL 611 (830)
Q Consensus 536 ~~g~~~~A~~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l---v~~l~r~g~~ 611 (830)
-+++.+.|++.|++..+ +.| ...+|+-+..-+.....+|.|...|+... ..+..||+++ .-.|.|.+++
T Consensus 433 LQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~~~rhYnAwYGlG~vy~Kqek~ 505 (638)
T KOG1126|consen 433 LQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GVDPRHYNAWYGLGTVYLKQEKL 505 (638)
T ss_pred hhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cCCchhhHHHHhhhhheeccchh
Confidence 99999999999999998 788 45578877777788889999999998754 5677888875 5568899999
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 612 SEAYRFIEMM-PVAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 612 ~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
+.|+-.|+++ .+.|. .++...+...+.+.|+.|+|..++++++-++|.|+-.-+..+.++...+++++|...++++++
T Consensus 506 e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 506 EFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKE 585 (638)
T ss_pred hHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 9999999987 78885 466666777789999999999999999999999999999999999999999999999999986
Q ss_pred CCCcCCCceeEEEECCEEEEEEeCCcCCCChhHHHHHHHHHHHHHHHcCc
Q 047408 690 RGLKKNPGCSWIEIKGKVNIFVAGGSSHPHAKKIESLLKRLRLEMKREGY 739 (830)
Q Consensus 690 ~g~~~~~~~swi~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~~~~~g~ 739 (830)
.-|+...++..|.++.++|+...+
T Consensus 586 --------------------------~vP~es~v~~llgki~k~~~~~~~ 609 (638)
T KOG1126|consen 586 --------------------------LVPQESSVFALLGKIYKRLGNTDL 609 (638)
T ss_pred --------------------------hCcchHHHHHHHHHHHHHHccchH
Confidence 346667788888888887765443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.8e-10 Score=126.26 Aligned_cols=330 Identities=19% Similarity=0.231 Sum_probs=222.0
Q ss_pred hhcCCChHHHHHHHhhcCC---CCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CcchHHHHHHHhhccCcchhh
Q 047408 312 YSKCGDLDGAIRVFEKMGE---RSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEP-DVYAITSILHACACDGLLEIG 387 (830)
Q Consensus 312 y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a 387 (830)
+++ |+.++|.+++.++.. ++...|.+|...|-+.|+.++++..+-..-. ..| |..-|..+-.-..+.|++++|
T Consensus 150 far-g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH--L~p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 150 FAR-GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH--LNPKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHh-CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHhcccHHHH
Confidence 344 999999999998865 4667899999999999999999887654433 334 445566666677778888888
Q ss_pred hhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhh
Q 047408 388 KDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPA 467 (830)
Q Consensus 388 ~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a 467 (830)
.-.+..+++.. +++....--=..+|-+.|+...|..-|.++...+. |..
T Consensus 227 ~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p---------------------~~d--------- 275 (895)
T KOG2076|consen 227 RYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP---------------------PVD--------- 275 (895)
T ss_pred HHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC---------------------chh---------
Confidence 88888888876 44444444456778888888888887777654421 111
Q ss_pred hcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCC--C---ChhhHHHHHHHHHhcCChHH
Q 047408 468 CASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPA--K---DLISWTIMIAGYGMHGFGCD 542 (830)
Q Consensus 468 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~---d~~~~~~li~~~~~~g~~~~ 542 (830)
..+++..+. ..+..|...++-+.|.+.++.... . +...+|.++..|....+++.
T Consensus 276 ---------~er~~d~i~------------~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~ 334 (895)
T KOG2076|consen 276 ---------IERIEDLIR------------RVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDK 334 (895)
T ss_pred ---------HHHHHHHHH------------HHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHH
Confidence 111111110 122333334444445444444332 1 23345566666666666666
Q ss_pred HHHHHHHHHHcC---------------------------CCCChhHHHHHHHHHHccC--CHHHHHHHHHHhHhhcCCCC
Q 047408 543 AIATFNDMRQAG---------------------------IEPDEVSFISVLYACSHSG--LVDEGWRFFNMMRYECNIEP 593 (830)
Q Consensus 543 A~~l~~~m~~~g---------------------------~~Pd~~t~~~ll~a~~~~g--~~~~a~~~~~~m~~~~~~~p 593 (830)
|+.....+.... +.++... ..+.-++.|.. ...+++..|- . +..+.|
T Consensus 335 ~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l--~-~~n~~~ 410 (895)
T KOG2076|consen 335 ALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFL--V-EDNVWV 410 (895)
T ss_pred hhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHH--H-HhcCCh
Confidence 666666665511 1222222 11222223333 3333433332 2 335444
Q ss_pred --CcchHHHHHHHHHhcCCHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 047408 594 --KLEHYACMVDLLSRTGNLSEAYRFIEMMPV---APDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLA 668 (830)
Q Consensus 594 --~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~---~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~ 668 (830)
+.+.|.-+.++|-+.|++.+|++++..+-. .-+..+|--+...+...|.+++|...+++++.+.|++..+-..|+
T Consensus 411 ~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~La 490 (895)
T KOG2076|consen 411 SDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLA 490 (895)
T ss_pred hhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHH
Confidence 478899999999999999999999998832 224679999999999999999999999999999999999999999
Q ss_pred HHHhhhcCHHHHHHHHHHHHhCCCcCCCceeE
Q 047408 669 NVYAEAEKWEEVKKLREKISRRGLKKNPGCSW 700 (830)
Q Consensus 669 ~~y~~~g~~~~A~~~~~~m~~~g~~~~~~~sw 700 (830)
.+|...|+.|+|.++.+.|..-+-++.+++.|
T Consensus 491 sl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 491 SLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 99999999999999998877544445566776
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.6e-10 Score=116.91 Aligned_cols=211 Identities=15% Similarity=0.142 Sum_probs=171.2
Q ss_pred hhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHH
Q 047408 472 AALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFN 548 (830)
Q Consensus 472 ~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~ 548 (830)
|+.-.+.+-+..+++.... +...|--+..+|....+.++-...|+... ..|..+|.--...+.-.+++++|+.=|+
T Consensus 340 g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~ 418 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQ 418 (606)
T ss_pred CCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHH
Confidence 5666777778877776533 33336667778999999999999999765 4466677777777777889999999999
Q ss_pred HHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 047408 549 DMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPD 626 (830)
Q Consensus 549 ~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~ 626 (830)
+.+. +.|+.+ .|.-+-.+..+.+.++++...|+....++ +-.++.|+-....|...+++++|.+.|+.. .++|+
T Consensus 419 Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 419 KAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF--PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 9988 788776 68888888889999999999999998654 345789999999999999999999999886 45554
Q ss_pred ---------HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 627 ---------ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 627 ---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
+.+-.+++-. +-.+++..|+.+++++++++|...-+|..|+.+-...|+.++|.++|++-.
T Consensus 495 ~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3333344333 234899999999999999999999999999999999999999999998643
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.1e-11 Score=127.63 Aligned_cols=277 Identities=10% Similarity=-0.010 Sum_probs=204.1
Q ss_pred chhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCcccccc
Q 047408 384 LEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMAC 463 (830)
Q Consensus 384 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ 463 (830)
.++|...|..+...- .....+..-+..+|...+++++|.++|+.+...+..- --+..+|.+
T Consensus 335 ~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~r------------------v~~meiyST 395 (638)
T KOG1126|consen 335 CREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYR------------------VKGMEIYST 395 (638)
T ss_pred HHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc------------------ccchhHHHH
Confidence 455556666633332 3334677778899999999999999999886543210 112223333
Q ss_pred chhhhcchhhHHHHHHHHH-HHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCC---ChhhHHHHHHHHHhcCC
Q 047408 464 ILPACASLAALERGREIHG-YILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAK---DLISWTIMIAGYGMHGF 539 (830)
Q Consensus 464 ll~a~~~~~~~~~a~~i~~-~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~ 539 (830)
+|--+-+.- +...+. .+++. -+..+.+|-++.+.|+-.++.+.|.+.|++..+- ...+|+-+..-+.....
T Consensus 396 ~LWHLq~~v----~Ls~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee 470 (638)
T KOG1126|consen 396 TLWHLQDEV----ALSYLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEE 470 (638)
T ss_pred HHHHHHhhH----HHHHHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHH
Confidence 332221111 111111 12222 2456889999999999999999999999987644 44677777777888889
Q ss_pred hHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHH
Q 047408 540 GCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRF 617 (830)
Q Consensus 540 ~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~ 617 (830)
+|.|...|+..+. +.|... .|..+...|.+.+.++.|.-.|+.+. .|.|. .....++...+-+.|+.|+|+++
T Consensus 471 ~d~a~~~fr~Al~--~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~ 545 (638)
T KOG1126|consen 471 FDKAMKSFRKALG--VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQL 545 (638)
T ss_pred HHhHHHHHHhhhc--CCchhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHH
Confidence 9999999999876 677766 67788889999999999999999887 78885 66677888899999999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 618 IEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 618 ~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
++++ .++| |+..----...+...+++++|...+|++.++.|+++..|.+|+.+|-+.|+.+.|..-+.-|.+
T Consensus 546 ~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 546 YEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 9997 4444 3332222334456678999999999999999999999999999999999999999987766554
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.7e-09 Score=108.64 Aligned_cols=264 Identities=11% Similarity=0.055 Sum_probs=205.5
Q ss_pred cCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHH
Q 047408 398 DMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERG 477 (830)
Q Consensus 398 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a 477 (830)
|...++.+.-...+-+..++++.+..++++.+.+.|+ +....+..=|.++..+|+-.+-
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dp---------------------fh~~~~~~~ia~l~el~~~n~L 297 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDP---------------------FHLPCLPLHIACLYELGKSNKL 297 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCC---------------------CCcchHHHHHHHHHHhcccchH
Confidence 3455667777788888899999999999999888774 3443443444444555554444
Q ss_pred HHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 047408 478 REIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKD---LISWTIMIAGYGMHGFGCDAIATFNDMRQAG 554 (830)
Q Consensus 478 ~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 554 (830)
-.+-..+++. .|....+|-++.--|.--|+.++|++.|.+...-| -..|-.....|+-.|..++|+..+...-+.
T Consensus 298 f~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl- 375 (611)
T KOG1173|consen 298 FLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL- 375 (611)
T ss_pred HHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-
Confidence 4443344443 46678899999999999999999999999765433 468999999999999999999999888763
Q ss_pred CCCC-hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC--CC------C
Q 047408 555 IEPD-EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM--PV------A 624 (830)
Q Consensus 555 ~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m--~~------~ 624 (830)
-|- ..-+.-+.--|.+.+..+.|.++|.+.. ++.|+ +..++-+.-+....+.+.+|...|+.. ++ +
T Consensus 376 -~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~ 451 (611)
T KOG1173|consen 376 -MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEK 451 (611)
T ss_pred -ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccc
Confidence 332 2234455566888999999999999876 77784 666677776777888999999988875 11 1
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 625 P-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 625 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
+ -..+|+.|+.+|++.+.+++|+..+++++.+.|.++.+|..++-+|...|+.+.|.+.+.+..
T Consensus 452 ~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 452 IFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred cchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 1 234678888999999999999999999999999999999999999999999999999987665
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.5e-09 Score=119.80 Aligned_cols=143 Identities=10% Similarity=-0.046 Sum_probs=73.9
Q ss_pred HHHHHHHhhhCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHH---HHHHHHHHccCCHHHHHHHH
Q 047408 509 LVLARSLFDMIPA---KDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSF---ISVLYACSHSGLVDEGWRFF 582 (830)
Q Consensus 509 ~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~---~~ll~a~~~~g~~~~a~~~~ 582 (830)
.+...+..+..+. ++...+..+...+...|+.++|++++++..+. .||.... ..........++.+.+.+.+
T Consensus 245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence 3444555555553 47778888888888888888888888888873 5555421 11111112234455555555
Q ss_pred HHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047408 583 NMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEM---MPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHV 653 (830)
Q Consensus 583 ~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~---m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 653 (830)
+...+...-.|+.....++..++.+.|++++|.+.|+. ....||..++..|...+...|+.++|..++++.
T Consensus 323 e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 323 EKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 54443221111112333444555555555555555552 133444444444444455555555555555444
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.1e-09 Score=113.77 Aligned_cols=530 Identities=14% Similarity=0.069 Sum_probs=259.8
Q ss_pred HHHHHHHHhCCCCCccchHHHHHHHHHhCCChHHHHHHHhcCCCCC----cchHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 047408 117 KVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNKIDNGK----VFIWNLLMHEYSKTGNFKESLYLFKKMQSL 192 (830)
Q Consensus 117 ~~~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 192 (830)
.++..+...|+.|+ ..+|.+||.-||..|+.+.|- +|..|.-++ -..++.++.+..+.++.+.+.
T Consensus 11 nfla~~e~~gi~Pn-RvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPN-RVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------- 79 (1088)
T ss_pred hHHHHHHHhcCCCc-hhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC---------
Confidence 45667788899999 899999999999999999998 888887553 457899999999988887665
Q ss_pred CCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHH-CCCCCChhhHH
Q 047408 193 GIAADSYTFSCVLKCLAVVGNSRRVKDAHKLFDELSDRDVVSWNCMISGYIANGVAEKGLEVFKEMLN-LGFNVDLATMV 271 (830)
Q Consensus 193 g~~p~~~t~~~ll~~~~~~g~~~~~~~A~~lf~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~-~g~~pd~~t~~ 271 (830)
.|...||..|+.+|...||+..++...+.+.. ++..+..+|....-..++....- -+.-||..+..
T Consensus 80 --ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~-----------i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~i 146 (1088)
T KOG4318|consen 80 --EPLADTYTNLLKAYRIHGDLILFEVVEQDLES-----------INQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAI 146 (1088)
T ss_pred --CCchhHHHHHHHHHHhccchHHHHHHHHHHHH-----------HHhhhhhhccCcHHHHHHhhcccCcccchhHHHHH
Confidence 68889999999999999987666666663333 23333444444333333333221 12334433321
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHH--H--HH-HhhcCCChHHHHHHHhhcCC-CCeehHHHHHHHHHh
Q 047408 272 TVLSGCANCGALMFGRAVHAFALKACFSKEISFNNT--L--LD-MYSKCGDLDGAIRVFEKMGE-RSVVSWTSMIAGYAR 345 (830)
Q Consensus 272 ~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~--L--i~-~y~k~g~~~~A~~~f~~m~~-~d~~~~~~li~~~~~ 345 (830)
-++ .-+.+++..++.+....+..++. . ++ +-.-...+++-........+ ++..++.+.+..-.-
T Consensus 147 lll----------v~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~ala 216 (1088)
T KOG4318|consen 147 LLL----------VLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALA 216 (1088)
T ss_pred HHH----------HHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHh
Confidence 111 01112222222221000000000 0 00 00001111111111122222 455555555555555
Q ss_pred cCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHH
Q 047408 346 EGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESV 425 (830)
Q Consensus 346 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 425 (830)
+|+.+.|..++.+|.+.|++.+..-|-.+|-+ .++......+...|...|+.|+..++.-.+-...++|....+...
T Consensus 217 ag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~ 293 (1088)
T KOG4318|consen 217 AGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG 293 (1088)
T ss_pred cCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc
Confidence 56666666666666666655555555555443 445555555555555556666555555444444443332221111
Q ss_pred HhcCCCCCchhHHHHHH---------------HHHHHHHHHhCC--CCCccccccchhhhcchhhHHHHHHHHHHHHHhC
Q 047408 426 FNQMPVKDIVSWNTMIG---------------ALDLFVAMLQNF--EPDGVTMACILPACASLAALERGREIHGYILRHG 488 (830)
Q Consensus 426 f~~m~~~~~~~~n~~i~---------------al~~f~~m~~~~--~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 488 (830)
.+.-.--....+.++.. .+..+.+..-.| .|. +.-+...-..+.|.-+...++-+.+...-
T Consensus 294 sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~--aiws~c~~l~hQgk~e~veqlvg~l~npt 371 (1088)
T KOG4318|consen 294 SQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILE--AIWSMCEKLRHQGKGEEVEQLVGQLLNPT 371 (1088)
T ss_pred cchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccch--HHHHHHHHHHHcCCCchHHHHHhhhcCCc
Confidence 00000000000000000 111222221112 111 10011111111233333444433332211
Q ss_pred CCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCCh-hhHHHHHHHHHh---cCChHHHHHHHHHHH------------H
Q 047408 489 ISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDL-ISWTIMIAGYGM---HGFGCDAIATFNDMR------------Q 552 (830)
Q Consensus 489 ~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~-~~~~~li~~~~~---~g~~~~A~~l~~~m~------------~ 552 (830)
+ ...+.-+++| .+.+.+.|.+...+.. ..++ .-.|... ..+..+..++....+ .
T Consensus 372 ~----r~s~~~V~a~-----~~~lrqyFrr~e~~~~~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss 441 (1088)
T KOG4318|consen 372 L----RDSGQNVDAF-----GALLRQYFRRIERHICSRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSS 441 (1088)
T ss_pred c----ccCcchHHHH-----HHHHHHHHHHHHhhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhH
Confidence 1 1111111111 1223344444433321 1122 1111111 111222222222111 0
Q ss_pred c----CCCC-------ChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 047408 553 A----GIEP-------DEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM 621 (830)
Q Consensus 553 ~----g~~P-------d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m 621 (830)
. -+.| -...-+.++.+|...-...++++.-+... .+-+ ...|..||+.+.+..++++|..+.++.
T Consensus 442 ~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye-~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~ 517 (1088)
T KOG4318|consen 442 TELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYE-DLLF---AGLYALLIKLMDLHDKLEYALSFVDEI 517 (1088)
T ss_pred HHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh---hhHHHHHhhhHHHHHHHHHHHhchhhh
Confidence 0 0111 01112344445544444444443333222 1111 256899999999999999999999887
Q ss_pred C-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc---cCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCc
Q 047408 622 P-----VAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFE---LEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLK 693 (830)
Q Consensus 622 ~-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~ 693 (830)
. +.-|..-+..+.....+++....+..+.+...+ ..|.-.....-+-|--+..|+-+...++.+-....|+.
T Consensus 518 d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~ 597 (1088)
T KOG4318|consen 518 DTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLS 597 (1088)
T ss_pred cccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhh
Confidence 3 223445577788888888888888888776654 33443445556667777888988888888888888886
Q ss_pred CCCceeE
Q 047408 694 KNPGCSW 700 (830)
Q Consensus 694 ~~~~~sw 700 (830)
- .|--|
T Consensus 598 e-tgPl~ 603 (1088)
T KOG4318|consen 598 E-TGPLW 603 (1088)
T ss_pred h-cccce
Confidence 6 34445
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.1e-10 Score=122.19 Aligned_cols=285 Identities=11% Similarity=0.014 Sum_probs=193.3
Q ss_pred CCChHHHHHHHhhcCCC--Ce-ehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHH--HHHHHhhccCcchhhhh
Q 047408 315 CGDLDGAIRVFEKMGER--SV-VSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAIT--SILHACACDGLLEIGKD 389 (830)
Q Consensus 315 ~g~~~~A~~~f~~m~~~--d~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~--~ll~a~~~~~~~~~a~~ 389 (830)
.|+++.|++.+...++. +. ..|-.......+.|++++|.+.|.++.+. .|+..... .....+...|+.+.|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 58899999888876553 22 22322234447889999999999999763 56655443 22456778899999999
Q ss_pred HHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhc
Q 047408 390 VHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACA 469 (830)
Q Consensus 390 ~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~ 469 (830)
.++.+.+.. +.+..+...+...|.+.|++++|.+++..+.+....+ |
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~-------------------~------------- 221 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGD-------------------E------------- 221 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCC-------------------H-------------
Confidence 999998887 5667889999999999999999999999887654310 0
Q ss_pred chhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHH
Q 047408 470 SLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIAT 546 (830)
Q Consensus 470 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l 546 (830)
+...++- ...+..++....+..+.+...++++.++ ..++..+..+...+...|+.++|.++
T Consensus 222 -----~~~~~l~-----------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~ 285 (398)
T PRK10747 222 -----EHRAMLE-----------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQI 285 (398)
T ss_pred -----HHHHHHH-----------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 0000000 0011122222233334455555566554 34666777777888888888888888
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 047408 547 FNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-PVA 624 (830)
Q Consensus 547 ~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~ 624 (830)
+++..+. .||.. ..++.+....++.+++.+..+...++ .|+ ...+.++..++.+.|++++|.+.|+.+ ...
T Consensus 286 L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~ 358 (398)
T PRK10747 286 ILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQ---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR 358 (398)
T ss_pred HHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 8877763 44442 11233334457888888888777643 343 456777888888888888888888876 667
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 047408 625 PDATIWGSLLCGCRIHHEVKLAEKVAEHVFELE 657 (830)
Q Consensus 625 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~ 657 (830)
|+...+..|...+...|+.++|...+++.+.+.
T Consensus 359 P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 359 PDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 888777778888888888888888888877653
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.4e-09 Score=115.42 Aligned_cols=279 Identities=12% Similarity=0.042 Sum_probs=187.8
Q ss_pred cCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHH
Q 047408 346 EGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESV 425 (830)
Q Consensus 346 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 425 (830)
.|++++|.+.+....+..-.| ...|.....+....|+.+.+.+.+..+.+..-.............+...|+.+.|...
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 588888887776654432111 1122222334456677777777777776543121122222335666777777777776
Q ss_pred HhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHh
Q 047408 426 FNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVK 505 (830)
Q Consensus 426 f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k 505 (830)
++++.+.+ +.++.+...+...|.+
T Consensus 176 l~~~~~~~--------------------------------------------------------P~~~~al~ll~~~~~~ 199 (398)
T PRK10747 176 VDKLLEVA--------------------------------------------------------PRHPEVLRLAEQAYIR 199 (398)
T ss_pred HHHHHhcC--------------------------------------------------------CCCHHHHHHHHHHHHH
Confidence 66654432 3455666677777777
Q ss_pred cCCHHHHHHHhhhCCCCCh-----------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCC
Q 047408 506 CGVLVLARSLFDMIPAKDL-----------ISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGL 574 (830)
Q Consensus 506 ~g~~~~A~~~f~~m~~~d~-----------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~ 574 (830)
.|++++|.+++..+.+... ..|..++.-.....+.+...++++.+-+. .+.+......+..++...|+
T Consensus 200 ~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~ 278 (398)
T PRK10747 200 TGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDD 278 (398)
T ss_pred HHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCC
Confidence 7777777777776653321 13334444444555566677777776543 34455678888899999999
Q ss_pred HHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047408 575 VDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPD-ATIWGSLLCGCRIHHEVKLAEKVAEH 652 (830)
Q Consensus 575 ~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~ 652 (830)
.++|.+.++...+ ..|+... .++......|+.+++++.+++. ...|+ +..+.++...|...+++++|+..+++
T Consensus 279 ~~~A~~~L~~~l~---~~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~ 353 (398)
T PRK10747 279 HDTAQQIILDGLK---RQYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRA 353 (398)
T ss_pred HHHHHHHHHHHHh---cCCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999988763 3444421 1222333559999999999887 45564 56788889999999999999999999
Q ss_pred HhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 653 VFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 653 ~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
+++.+|++ ..|..|+.++.+.|+-++|.+.+++-.
T Consensus 354 al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 354 ALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999996 457799999999999999999988653
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.7e-07 Score=95.50 Aligned_cols=488 Identities=12% Similarity=0.100 Sum_probs=269.3
Q ss_pred CCChHHHHHHHhcCC---CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHH
Q 047408 145 CGDLKEGRRVFNKID---NGKVFIWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRRVKDAH 221 (830)
Q Consensus 145 ~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~A~ 221 (830)
.+++..|+.+|+... .+++..|---+..=.++.....|..++++....=...|..-|--+. .=-..| .+..|+
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~y-mEE~Lg---Ni~gaR 161 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIY-MEEMLG---NIAGAR 161 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHH-HHHHhc---ccHHHH
Confidence 345555666666543 3344555555555566666666666666655432222322222111 111223 477777
Q ss_pred HHHhhCC--CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHh-CC
Q 047408 222 KLFDELS--DRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKA-CF 298 (830)
Q Consensus 222 ~lf~~m~--~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~-g~ 298 (830)
++|++-- +|+...|++.|.-=.+....+.|..++.+..- +.|+..+|.--.+-=-+.|....+++++..+++. |-
T Consensus 162 qiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 162 QIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 7777654 57777888888877787888888888877764 4577777766666666777777777777776653 11
Q ss_pred C-CCchHHHHHHHHhhcCCChHHHHHHHhh----cCCCC-eehHHHHHHHHHhcCCh---hHHHHH-----HHHHHHcCC
Q 047408 299 S-KEISFNNTLLDMYSKCGDLDGAIRVFEK----MGERS-VVSWTSMIAGYAREGVF---DGAIRL-----FRGMVREGI 364 (830)
Q Consensus 299 ~-~~~~~~~~Li~~y~k~g~~~~A~~~f~~----m~~~d-~~~~~~li~~~~~~g~~---~~A~~l-----~~~m~~~g~ 364 (830)
+ .+..++++....=.++...+.|+-+|.- +|... ...|.....-=-+-|+. ++++-- |+.++.. -
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~-n 318 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK-N 318 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh-C
Confidence 1 1222334444444455566666666543 22211 11222222211222332 222221 2222222 1
Q ss_pred CCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCch-hhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHH
Q 047408 365 EPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSL-YVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGA 443 (830)
Q Consensus 365 ~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~a 443 (830)
+-|-.|+--.+..-...|+.+..+++++.++..-.+... ..|...|-.... ..+|+++
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWin-------YalyeEl-------------- 377 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWIN-------YALYEEL-------------- 377 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHH-------HHHHHHH--------------
Confidence 223334444444444445555555555555443211100 111111111110 0111221
Q ss_pred HHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHH----hcCCHHHHHHHhhhC
Q 047408 444 LDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYV----KCGVLVLARSLFDMI 519 (830)
Q Consensus 444 l~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~----k~g~~~~A~~~f~~m 519 (830)
...+.+..++++...++ -++...+++.-+=-||+ ++.++..|++++...
T Consensus 378 --------------------------e~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~A 430 (677)
T KOG1915|consen 378 --------------------------EAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNA 430 (677)
T ss_pred --------------------------HhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 22345666666666666 23444555555544454 567777777777655
Q ss_pred C--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcc
Q 047408 520 P--AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPD-EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLE 596 (830)
Q Consensus 520 ~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 596 (830)
. .|-.-++-..|..-.+.++++....+|++.++ ..|. ..++.....-=...|+.+.|+.+|+...++..+..-..
T Consensus 431 IG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpel 508 (677)
T KOG1915|consen 431 IGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPEL 508 (677)
T ss_pred hccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHH
Confidence 4 44555666677777777888888888888887 4454 34666666556677888888888888776533333445
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHhc----
Q 047408 597 HYACMVDLLSRTGNLSEAYRFIEMM-PVAPDATIWGSLLCGCR-----IHH-----------EVKLAEKVAEHVFE---- 655 (830)
Q Consensus 597 ~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~-----~~g-----------~~~~a~~~~~~~~~---- 655 (830)
.|.+.||.=...|.++.|..+++++ ...+..-+|-++..--. ..+ ++..|+.+++++..
T Consensus 509 lwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~ 588 (677)
T KOG1915|consen 509 LWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKE 588 (677)
T ss_pred HHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHh
Confidence 6777777777888888888888876 33455557777654322 233 56788888887753
Q ss_pred cCCCC--cchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 656 LEPDN--TGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 656 l~p~~--~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
.+|.. ......+-++-...|.-.+...|-++|.+
T Consensus 589 ~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 589 STPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPK 624 (677)
T ss_pred cCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccH
Confidence 34432 12333445566677877788777777653
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.23 E-value=2e-11 Score=89.98 Aligned_cols=50 Identities=24% Similarity=0.537 Sum_probs=48.1
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHc
Q 047408 522 KDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSH 571 (830)
Q Consensus 522 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~ 571 (830)
||+++||++|.+|+++|++++|+++|++|.+.|++||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.8e-07 Score=95.98 Aligned_cols=397 Identities=13% Similarity=0.153 Sum_probs=194.2
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHH-HhCCCCCchHHHHHHHH
Q 047408 233 VSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFAL-KACFSKEISFNNTLLDM 311 (830)
Q Consensus 233 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~Li~~ 311 (830)
..|++|..-|.+.|.++.|.++|.+-.+.- ....-|+.+.++|+.......+..+- ... +.|-+.+.
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~--------- 316 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDD--------- 316 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhh---------
Confidence 479999999999999999999999877642 33445666777765433221111111 000 11111111
Q ss_pred hhcCCChHHHHHHHhhcCC---------------CCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc------ch
Q 047408 312 YSKCGDLDGAIRVFEKMGE---------------RSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDV------YA 370 (830)
Q Consensus 312 y~k~g~~~~A~~~f~~m~~---------------~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~------~t 370 (830)
-+++-...-|+.+.. .++..|..-+.. ..|++.+-...|.+..+. +.|-. ..
T Consensus 317 ----~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~L 389 (835)
T KOG2047|consen 317 ----VDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTL 389 (835)
T ss_pred ----hhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhH
Confidence 122223333333322 245566655443 467788888888888764 34432 23
Q ss_pred HHHHHHHhhccCcchhhhhHHHHHHhhcCCCc---hhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHH
Q 047408 371 ITSILHACACDGLLEIGKDVHDYIKENDMQSS---LYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLF 447 (830)
Q Consensus 371 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f 447 (830)
|..+.+-|-..|+++.|+.+|....+..++.- ..+|-.-.+|=.+..+++.|+++.+....-
T Consensus 390 w~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v--------------- 454 (835)
T KOG2047|consen 390 WVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV--------------- 454 (835)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC---------------
Confidence 56666677778888888888888777654332 345555556666666777777766554211
Q ss_pred HHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhH
Q 047408 448 VAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISW 527 (830)
Q Consensus 448 ~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~ 527 (830)
|.... +.. ...+..-++ . +-.+..+|.-.+|.--.+|-++....+++++..--+.|=
T Consensus 455 --------P~~~~----~~~-yd~~~pvQ~-r---------lhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTP 511 (835)
T KOG2047|consen 455 --------PTNPE----LEY-YDNSEPVQA-R---------LHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATP 511 (835)
T ss_pred --------CCchh----hhh-hcCCCcHHH-H---------HHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCH
Confidence 11100 000 000000000 0 011233444444555555555555555555442211111
Q ss_pred HHHH---HHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHH---HccCCHHHHHHHHHHhHhhcCCCCCc--chH
Q 047408 528 TIMI---AGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYAC---SHSGLVDEGWRFFNMMRYECNIEPKL--EHY 598 (830)
Q Consensus 528 ~~li---~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~---~~~g~~~~a~~~~~~m~~~~~~~p~~--~~y 598 (830)
-.++ .-+-.|..++++.+.|++-+..=--|+.. .++..|.-+ ...-.++.|+.+|++..+ +.+|.. ..|
T Consensus 512 qii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~aKtiy 589 (835)
T KOG2047|consen 512 QIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEHAKTIY 589 (835)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHH
Confidence 1111 11234445556666555544431223332 233333222 122345566666666553 333321 111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcch--HHHHHHHHh
Q 047408 599 ACMVDLLSRTGNLSEAYRFIEMM--PVAPD--ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGY--YVLLANVYA 672 (830)
Q Consensus 599 ~~lv~~l~r~g~~~eA~~~~~~m--~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~--~~~l~~~y~ 672 (830)
-....+=.+-|....|++++++. .+++. ...||..|.--...=-+-.-+.+++++++.-|++-.- ..-.+++-.
T Consensus 590 LlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEt 669 (835)
T KOG2047|consen 590 LLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLET 669 (835)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhh
Confidence 11122222445556666666665 22332 1355555543221112233455677777766664322 234567777
Q ss_pred hhcCHHHHHHHHHHHH
Q 047408 673 EAEKWEEVKKLREKIS 688 (830)
Q Consensus 673 ~~g~~~~A~~~~~~m~ 688 (830)
+.|..+.|..++..-.
T Consensus 670 klGEidRARaIya~~s 685 (835)
T KOG2047|consen 670 KLGEIDRARAIYAHGS 685 (835)
T ss_pred hhhhHHHHHHHHHhhh
Confidence 7777777777765443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.9e-09 Score=108.74 Aligned_cols=246 Identities=16% Similarity=0.139 Sum_probs=181.1
Q ss_pred hhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCC-----------------------
Q 047408 467 ACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKD----------------------- 523 (830)
Q Consensus 467 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d----------------------- 523 (830)
++-.+...+++.+-.......|++.+...-+-....+-...+++.|+.+|+++.+.|
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 334444555555555555555655555555544455555556666666666554321
Q ss_pred --------------hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhH-HHHHHHHHHccCCHHHHHHHHHHhHhh
Q 047408 524 --------------LISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVS-FISVLYACSHSGLVDEGWRFFNMMRYE 588 (830)
Q Consensus 524 --------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~ 588 (830)
+.|...+.+-|+..++.++|+..|++.++ +.|.... ++-+..-+........|.+-++...
T Consensus 316 s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv-- 391 (559)
T KOG1155|consen 316 SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV-- 391 (559)
T ss_pred HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH--
Confidence 22333345567778889999999999998 6777764 5555577888899999999999887
Q ss_pred cCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHH
Q 047408 589 CNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYV 665 (830)
Q Consensus 589 ~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~ 665 (830)
.+.| |-..|-.|..+|.-.+...-|+=+|++. ..+| |...|.+|...|.+.++.++|+..+++++...-.+..+|+
T Consensus 392 -di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~ 470 (559)
T KOG1155|consen 392 -DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALV 470 (559)
T ss_pred -hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHH
Confidence 6777 5678889999999999999999999998 6777 6899999999999999999999999999999888889999
Q ss_pred HHHHHHhhhcCHHHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCcCCCChhHHHHHHHHHHHHHHH
Q 047408 666 LLANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIEIKGKVNIFVAGGSSHPHAKKIESLLKRLRLEMKR 736 (830)
Q Consensus 666 ~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~~~swi~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~~~~ 736 (830)
.|+++|-+.++.++|...+++-.+.-. ......|+..++...|++-..+|++
T Consensus 471 ~LakLye~l~d~~eAa~~yek~v~~~~-------------------~eg~~~~~t~ka~~fLA~~f~k~~~ 522 (559)
T KOG1155|consen 471 RLAKLYEELKDLNEAAQYYEKYVEVSE-------------------LEGEIDDETIKARLFLAEYFKKMKD 522 (559)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH-------------------hhcccchHHHHHHHHHHHHHHhhcc
Confidence 999999999999999998876543110 0011245566677777766666553
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.3e-11 Score=89.56 Aligned_cols=50 Identities=38% Similarity=0.594 Sum_probs=48.1
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhc
Q 047408 230 RDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCAN 279 (830)
Q Consensus 230 ~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 279 (830)
||+++||++|++|++.|++++|+++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999864
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.4e-11 Score=126.10 Aligned_cols=253 Identities=13% Similarity=0.153 Sum_probs=74.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHH-HhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCC
Q 047408 340 IAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILH-ACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGS 418 (830)
Q Consensus 340 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~-a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~ 418 (830)
...+.+.|++++|++++++-.....+|+...|-.++. .+-..++.+.|.+.++.+...+- .+...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccccc
Confidence 3444555566666665544333322334333333222 23334555555555555554442 234445555555 46666
Q ss_pred hHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhH
Q 047408 419 MADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANA 498 (830)
Q Consensus 419 ~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~ 498 (830)
+++|.+++...-+++ +++..+..
T Consensus 93 ~~~A~~~~~~~~~~~---------------------------------------------------------~~~~~l~~ 115 (280)
T PF13429_consen 93 PEEALKLAEKAYERD---------------------------------------------------------GDPRYLLS 115 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccc---------------------------------------------------------cccchhhH
Confidence 666666655433221 22233333
Q ss_pred HHHHHHhcCCHHHHHHHhhhCC-----CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHcc
Q 047408 499 IVDMYVKCGVLVLARSLFDMIP-----AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDE-VSFISVLYACSHS 572 (830)
Q Consensus 499 Li~~y~k~g~~~~A~~~f~~m~-----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~ 572 (830)
++..|.+.|+++++.++++.+. ..+...|..+...+.+.|+.++|++.|++.++ ..|+. .....++..+...
T Consensus 116 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~--~~P~~~~~~~~l~~~li~~ 193 (280)
T PF13429_consen 116 ALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE--LDPDDPDARNALAWLLIDM 193 (280)
T ss_dssp --H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHCTT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHC
Confidence 4444555555555555554422 23445566666666666666666666666666 45543 3455566666666
Q ss_pred CCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 047408 573 GLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVA 650 (830)
Q Consensus 573 g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 650 (830)
|+.+++.+++....... ..+...+..+..+|...|+.++|+..+++. ...| |+.+...+..++...|+.++|..+.
T Consensus 194 ~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~ 271 (280)
T PF13429_consen 194 GDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLR 271 (280)
T ss_dssp CHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------
T ss_pred CChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 66666666666655332 334455566666666777777777766665 2234 4555666666677777777777766
Q ss_pred HHHhc
Q 047408 651 EHVFE 655 (830)
Q Consensus 651 ~~~~~ 655 (830)
+++++
T Consensus 272 ~~~~~ 276 (280)
T PF13429_consen 272 RQALR 276 (280)
T ss_dssp -----
T ss_pred ccccc
Confidence 66553
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.1e-09 Score=108.89 Aligned_cols=197 Identities=10% Similarity=0.041 Sum_probs=164.0
Q ss_pred chhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 047408 492 DRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYA 568 (830)
Q Consensus 492 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a 568 (830)
....+..+...|.+.|++++|.+.|++.. ..+...|..+...|...|++++|++.|++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 45677788899999999999999998764 3356788889999999999999999999998853 2234567777888
Q ss_pred HHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 047408 569 CSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLA 646 (830)
Q Consensus 569 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 646 (830)
+...|++++|.++|+..............+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998753222223556778889999999999999999886 4444 466788888899999999999
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 647 EKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 647 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
...++++++..|+++..+..++.++...|++++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999898888889999999999999999999887764
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.4e-07 Score=91.96 Aligned_cols=413 Identities=13% Similarity=0.114 Sum_probs=242.9
Q ss_pred cCChHHHHHHHHHhhcCCCCh-hhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCccchHHHHHHHHHhCCChHHHHHH
Q 047408 76 VGNLEKAMEVLYSSEKSKIDT-KTYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRV 154 (830)
Q Consensus 76 ~g~~~~A~~~~~~m~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~ 154 (830)
++++..|.++|++.+..+-.. ..+..-+..-.+.+.+..|+.++++.+.. .|....+|-..+-|--..|++..|+++
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 344455555555554332111 12333333334445555555555555442 222123444444444455555555555
Q ss_pred HhcCC--CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHhhCCCCCc
Q 047408 155 FNKID--NGKVFIWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRRVKDAHKLFDELSDRDV 232 (830)
Q Consensus 155 f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~A~~lf~~m~~~~~ 232 (830)
|+... +|+...|++.|.-=.+-...+.|..++++..- ..|++
T Consensus 164 ferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~------------------------------------~HP~v 207 (677)
T KOG1915|consen 164 FERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL------------------------------------VHPKV 207 (677)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe------------------------------------ecccH
Confidence 55432 44555555555555555555555555554442 23455
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHH----hcCCChHHHHHHHHHHHHhCCCCC-chHHHH
Q 047408 233 VSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGC----ANCGALMFGRAVHAFALKACFSKE-ISFNNT 307 (830)
Q Consensus 233 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~----~~~~~~~~~~~l~~~~~~~g~~~~-~~~~~~ 307 (830)
.+|--...-=-++|+...|..+|....+. -.|...-..++.++ .++...+.++.++..++..-.... ..++..
T Consensus 208 ~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~ 285 (677)
T KOG1915|consen 208 SNWIKYARFEEKHGNVALARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKK 285 (677)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 55555455555556665566655554432 11222222233333 345566777777777776533322 234444
Q ss_pred HHHHhhcCCChHHHHHH--------HhhcCCC---CeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcc-------
Q 047408 308 LLDMYSKCGDLDGAIRV--------FEKMGER---SVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVY------- 369 (830)
Q Consensus 308 Li~~y~k~g~~~~A~~~--------f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~------- 369 (830)
++..=-+.|+....... ++.+... |-.+|--.++.--..|+.+...++|++.... ++|-..
T Consensus 286 ~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RY 364 (677)
T KOG1915|consen 286 YTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRY 364 (677)
T ss_pred HHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHH
Confidence 44444444554333222 2222222 4557777777777789999999999988754 555321
Q ss_pred hHHHHHHHh---hccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHH----hcCChHHHHHHHhcCCCCCchhHHHHHH
Q 047408 370 AITSILHAC---ACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYA----KCGSMADAESVFNQMPVKDIVSWNTMIG 442 (830)
Q Consensus 370 t~~~ll~a~---~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~----k~g~~~~A~~~f~~m~~~~~~~~n~~i~ 442 (830)
.|.-+=-+| ....+.+.+++++...++. ++...+++.-+=-||+ ++.++..|++++.....+
T Consensus 365 IYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~---------- 433 (677)
T KOG1915|consen 365 IYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK---------- 433 (677)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc----------
Confidence 222221122 2457888888999888873 4555666666666665 567888888887654432
Q ss_pred HHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC-C
Q 047408 443 ALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP-A 521 (830)
Q Consensus 443 al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~-~ 521 (830)
-|-.-+|-.-|..=.+++.++..+.+++..++.+ +.+..+|.-....-...|+.+.|+.+|+-.. +
T Consensus 434 ------------cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q 500 (677)
T KOG1915|consen 434 ------------CPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQ 500 (677)
T ss_pred ------------CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence 4666677777777778888999999999888876 5577788877777788899999999998654 3
Q ss_pred C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047408 522 K----DLISWTIMIAGYGMHGFGCDAIATFNDMRQA 553 (830)
Q Consensus 522 ~----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 553 (830)
| ....|-+.|.--...|.+++|..+|+++++.
T Consensus 501 p~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 501 PALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred cccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 3 3467888888888889999999999999874
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.5e-08 Score=111.88 Aligned_cols=291 Identities=9% Similarity=0.031 Sum_probs=201.9
Q ss_pred hhHHHHHH--HhcCChHHHHHHHHHhhcCCCChh-hHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCccchHHHHHHHH
Q 047408 66 YNAEIGRF--CEVGNLEKAMEVLYSSEKSKIDTK-TYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMF 142 (830)
Q Consensus 66 ~~~li~~~--~~~g~~~~A~~~~~~m~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li~~y 142 (830)
...+..+. ...|+++.|.+.+.+.....++|. .+.....+....|+.+.+...+....+....+. ..+.-.....+
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~-l~~~~~~a~l~ 163 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDN-ILVEIARTRIL 163 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCc-hHHHHHHHHHH
Confidence 33344443 468999999999999888777765 445556777788999999999999877542222 23444467888
Q ss_pred HhCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHH---HhcCC-CC
Q 047408 143 VTCGDLKEGRRVFNKIDN---GKVFIWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCL---AVVGN-SR 215 (830)
Q Consensus 143 ~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~---~~~g~-~~ 215 (830)
...|+.+.|+..|+.+.+ .+...+..+...|.+.|++++|.+++..+.+.++.+..........+. ...+. ..
T Consensus 164 l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~ 243 (409)
T TIGR00540 164 LAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADE 243 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999999998763 356678899999999999999999999999987543332211111111 11110 11
Q ss_pred CHHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHH-HHHHHH--hcCCChHHHHHH
Q 047408 216 RVKDAHKLFDELSD---RDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMV-TVLSGC--ANCGALMFGRAV 289 (830)
Q Consensus 216 ~~~~A~~lf~~m~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~-~ll~a~--~~~~~~~~~~~l 289 (830)
..+...+.++..+. .+...+..+...+...|+.++|.+++++..+. .||..... .++..+ ...++.....+.
T Consensus 244 ~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~ 321 (409)
T TIGR00540 244 GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKL 321 (409)
T ss_pred CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHH
Confidence 24556666777764 48889999999999999999999999999875 35544210 122222 233556666666
Q ss_pred HHHHHHhCCCCCc--hHHHHHHHHhhcCCChHHHHHHHh--hc--CCCCeehHHHHHHHHHhcCChhHHHHHHHHHH
Q 047408 290 HAFALKACFSKEI--SFNNTLLDMYSKCGDLDGAIRVFE--KM--GERSVVSWTSMIAGYAREGVFDGAIRLFRGMV 360 (830)
Q Consensus 290 ~~~~~~~g~~~~~--~~~~~Li~~y~k~g~~~~A~~~f~--~m--~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 360 (830)
.+...+.. +.|+ ....++-..+.+.|++++|++.|+ .. ..||...+..+...+.+.|+.++|.+++++-.
T Consensus 322 ~e~~lk~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 322 IEKQAKNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66655542 3333 555677777888888888888888 34 23666667778888888888888888877643
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.9e-09 Score=113.35 Aligned_cols=196 Identities=18% Similarity=0.194 Sum_probs=138.8
Q ss_pred hhcchhhHHHHHHHHHHHHHh-----C--CCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCC
Q 047408 467 ACASLAALERGREIHGYILRH-----G--ISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGF 539 (830)
Q Consensus 467 a~~~~~~~~~a~~i~~~~~~~-----g--~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~ 539 (830)
.+...+.+.+|.-++..+... | .+.-..+++.|...|.+.|++++|...+
T Consensus 250 ~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~----------------------- 306 (508)
T KOG1840|consen 250 VYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYC----------------------- 306 (508)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHH-----------------------
Confidence 344445555555555444321 2 1112345566667899999999998877
Q ss_pred hHHHHHHHHHHHHcCCCCChh--HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC--C----cchHHHHHHHHHhcCCH
Q 047408 540 GCDAIATFNDMRQAGIEPDEV--SFISVLYACSHSGLVDEGWRFFNMMRYECNIEP--K----LEHYACMVDLLSRTGNL 611 (830)
Q Consensus 540 ~~~A~~l~~~m~~~g~~Pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p--~----~~~y~~lv~~l~r~g~~ 611 (830)
++|++++++ ..|..+..+ -++.+...|.+.+.+++|..++....+.+.-.| + ..+|+.|..+|-..|++
T Consensus 307 -e~Al~I~~~--~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~ 383 (508)
T KOG1840|consen 307 -ERALEIYEK--LLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKY 383 (508)
T ss_pred -HHHHHHHHH--hhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcch
Confidence 557777777 333444443 366677778999999999999887665444222 2 46799999999999999
Q ss_pred HHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhc----cCCCCc---chHHHHHHHHhhh
Q 047408 612 SEAYRFIEMM---------PVAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFE----LEPDNT---GYYVLLANVYAEA 674 (830)
Q Consensus 612 ~eA~~~~~~m---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----l~p~~~---~~~~~l~~~y~~~ 674 (830)
+||++++++. ...+. ....+-|..+|...++.+.|..++++... ..|+++ ..|..|+-+|.+.
T Consensus 384 ~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~ 463 (508)
T KOG1840|consen 384 KEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQ 463 (508)
T ss_pred hHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHc
Confidence 9999999886 11232 45677788899999999999999887654 345554 5688999999999
Q ss_pred cCHHHHHHHHHHHH
Q 047408 675 EKWEEVKKLREKIS 688 (830)
Q Consensus 675 g~~~~A~~~~~~m~ 688 (830)
|++++|.++-+...
T Consensus 464 g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 464 GNYEAAEELEEKVL 477 (508)
T ss_pred ccHHHHHHHHHHHH
Confidence 99999999877654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.9e-08 Score=101.52 Aligned_cols=181 Identities=12% Similarity=0.122 Sum_probs=137.4
Q ss_pred hcCCHHHHHHHhhhCCCCChhhHHHHHH---HHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHH
Q 047408 505 KCGVLVLARSLFDMIPAKDLISWTIMIA---GYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRF 581 (830)
Q Consensus 505 k~g~~~~A~~~f~~m~~~d~~~~~~li~---~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~ 581 (830)
-.|++++|.+.+.+....|...-.++.+ .+-..|+.++|++.|-++..- +.-+...+..+.+-|....+..+|+++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 4578889988888887776654444332 456778999999999887652 233444677777888888889999998
Q ss_pred HHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 047408 582 FNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIE-MMPVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEP 658 (830)
Q Consensus 582 ~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~-~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p 658 (830)
+.+.. .+.| |+...+-|.++|-+.|+-.+|.+..- ....-| +..+..-|..-|....-.+.++..++++--+.|
T Consensus 581 ~~q~~---slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp 657 (840)
T KOG2003|consen 581 LMQAN---SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP 657 (840)
T ss_pred HHHhc---ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence 87654 4555 58889999999999999999988643 333333 444444455555666667899999999999999
Q ss_pred CCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 659 DNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 659 ~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
+.+.....++..+.+.|++..|.++++..-.
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 9888888889999999999999999887753
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.8e-08 Score=98.11 Aligned_cols=289 Identities=11% Similarity=0.055 Sum_probs=221.4
Q ss_pred HHHHHH--hcCChHHHHHHHHHhhcCCCChh-hHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCccchHHHHHHHHHhC
Q 047408 69 EIGRFC--EVGNLEKAMEVLYSSEKSKIDTK-TYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMFVTC 145 (830)
Q Consensus 69 li~~~~--~~g~~~~A~~~~~~m~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li~~y~~~ 145 (830)
+..++. -.|+|.+|.++..+....+..|. .|..-.++.-+.|+.+.+-+...++.+..-.+. ..+.-+........
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~-l~v~ltrarlll~~ 166 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDT-LAVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCch-HHHHHHHHHHHHhC
Confidence 444443 36999999999999888777775 777778888899999999999999988643444 66777778888999
Q ss_pred CChHHHHHHHhc---CCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCc-------ccHHHHHHHHHhcCCCC
Q 047408 146 GDLKEGRRVFNK---IDNGKVFIWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADS-------YTFSCVLKCLAVVGNSR 215 (830)
Q Consensus 146 g~~~~A~~~f~~---m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~~~~~~g~~~ 215 (830)
|+.+.|+.-.+. |..++...-....+.|.+.|++.+...++..|.+.|+-.|+ .+|..+++-+...+
T Consensus 167 ~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~--- 243 (400)
T COG3071 167 RDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN--- 243 (400)
T ss_pred CCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc---
Confidence 999999887775 55678889999999999999999999999999999976654 35666666555444
Q ss_pred CHHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHH
Q 047408 216 RVKDAHKLFDELSD---RDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAF 292 (830)
Q Consensus 216 ~~~~A~~lf~~m~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~ 292 (830)
..+.-...++..|. .++..--+++.-+.+.|+.++|.++..+-.+.+..|+- ..+-.+.+.++...-.+..+.
T Consensus 244 ~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~ 319 (400)
T COG3071 244 GSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEK 319 (400)
T ss_pred cchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHH
Confidence 34444556666663 45777778889999999999999999999988877772 223345556665554444444
Q ss_pred H-HHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCC--CCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 047408 293 A-LKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGE--RSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPD 367 (830)
Q Consensus 293 ~-~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 367 (830)
. .+.+-.| ..+.+|-..|.+.+.+.+|...|+.... ++..+|+-+..+|.+.|++.+|.+.+++-...-.+|+
T Consensus 320 ~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 320 WLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred HHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 4 3444344 6778899999999999999999987643 7888999999999999999999999888765433443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.5e-08 Score=114.36 Aligned_cols=213 Identities=14% Similarity=0.027 Sum_probs=161.9
Q ss_pred chhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC--CC-ChhhHHHHHHHHHhcCChHHHHHH
Q 047408 470 SLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP--AK-DLISWTIMIAGYGMHGFGCDAIAT 546 (830)
Q Consensus 470 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~--~~-d~~~~~~li~~~~~~g~~~~A~~l 546 (830)
..++.++|...+..+++.. +.+...+..+...+...|++++|...|++.. .| +...|..+...|...|++++|+..
T Consensus 316 ~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~ 394 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQT 394 (553)
T ss_pred cchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3456889999999998875 4577888889999999999999999999865 33 466888899999999999999999
Q ss_pred HHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 047408 547 FNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-PV 623 (830)
Q Consensus 547 ~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~ 623 (830)
|++..+ +.|+.. .+..++.++...|++++|...++..... ..|+ ...+..+..+|...|+.++|.+.++++ +.
T Consensus 395 ~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 395 INECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ 470 (553)
T ss_pred HHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc
Confidence 999998 567654 2334445566789999999999887643 2353 455777888999999999999999887 55
Q ss_pred CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhC
Q 047408 624 APDA-TIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRR 690 (830)
Q Consensus 624 ~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 690 (830)
.|+. ..++.|...+...| +.|...++++++..-..+.....+..+|+-.|+-+.+... +++.+.
T Consensus 471 ~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 471 EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 6654 44555555566666 5788878877764433333344488889999998888877 556543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-05 Score=90.84 Aligned_cols=144 Identities=17% Similarity=0.244 Sum_probs=119.7
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 047408 524 LISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVD 603 (830)
Q Consensus 524 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~ 603 (830)
...|+.+..+-.+.|...+|++-|-+. -|...|.-++.++++.|.+++-.+++...+++ .-+|.++ +.|+-
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIF 1174 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHH
Confidence 457999999999999999999988442 34557999999999999999999999877654 5666554 57899
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHH
Q 047408 604 LLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKL 683 (830)
Q Consensus 604 ~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~ 683 (830)
+|++.+++.|-++++. -||..-......-|...|.++.|..++.. .+.|..|+..+...|.+..|..-
T Consensus 1175 AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred HHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999984 57877788889999999999999888864 46788899999999999988876
Q ss_pred HHHHH
Q 047408 684 REKIS 688 (830)
Q Consensus 684 ~~~m~ 688 (830)
-++..
T Consensus 1243 aRKAn 1247 (1666)
T KOG0985|consen 1243 ARKAN 1247 (1666)
T ss_pred hhhcc
Confidence 54443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.5e-07 Score=95.67 Aligned_cols=267 Identities=12% Similarity=0.019 Sum_probs=145.7
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHH
Q 047408 342 GYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMAD 421 (830)
Q Consensus 342 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~ 421 (830)
-+...+++.+.+++++...+. .++....+..-|.++...|+...-..+=..+++. .+....+|-++.--|.-.|+.++
T Consensus 253 ~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~se 330 (611)
T KOG1173|consen 253 RLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSE 330 (611)
T ss_pred HHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHH
Confidence 344445555555555554443 2233333333344444444433333333333332 23344555555555555566666
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCC-CCchhHHhHHH
Q 047408 422 AESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGI-SADRNVANAIV 500 (830)
Q Consensus 422 A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~-~~~~~~~~~Li 500 (830)
|++.|.....-|. .=...|.....+++..+..++|...+..+-+.-. ..-+..| +.
T Consensus 331 ARry~SKat~lD~---------------------~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LY--lg 387 (611)
T KOG1173|consen 331 ARRYFSKATTLDP---------------------TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLY--LG 387 (611)
T ss_pred HHHHHHHHhhcCc---------------------cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHH--HH
Confidence 6666655433221 1122344444555555555555555554444210 0112222 22
Q ss_pred HHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc--CCC---C-ChhHHHHHHHHHHc
Q 047408 501 DMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQA--GIE---P-DEVSFISVLYACSH 571 (830)
Q Consensus 501 ~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~---P-d~~t~~~ll~a~~~ 571 (830)
--|.+.++++-|.+.|.+.. ..|+...+-+....-..+.+.+|..+|+..+.. .+. + -..+++.|..+|.+
T Consensus 388 mey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk 467 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK 467 (611)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH
Confidence 23666777777777776543 336666666666666677777888887776621 011 1 23356777777788
Q ss_pred cCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 047408 572 SGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPDATIWGSLLCG 636 (830)
Q Consensus 572 ~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~ 636 (830)
.+.+++|+..|+... -..| +..+|+++.-.|...|+++.|.+.|.+. .++||..+-..+|+.
T Consensus 468 l~~~~eAI~~~q~aL---~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 468 LNKYEEAIDYYQKAL---LLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKL 531 (611)
T ss_pred HhhHHHHHHHHHHHH---HcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 888888888877765 2333 5677777777777778888887777765 677777666666653
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.6e-08 Score=113.12 Aligned_cols=210 Identities=11% Similarity=0.050 Sum_probs=163.0
Q ss_pred hhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHH---------hcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCC
Q 047408 472 AALERGREIHGYILRHGISADRNVANAIVDMYV---------KCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGF 539 (830)
Q Consensus 472 ~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~---------k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~ 539 (830)
+++++|.+.+..+++.. +.+...+..|...|. ..+++++|...+++.. ..+...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 46788888888888754 234555666655544 2345889999998765 3467789999899999999
Q ss_pred hHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCc-chHHHHHHHHHhcCCHHHHHHH
Q 047408 540 GCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKL-EHYACMVDLLSRTGNLSEAYRF 617 (830)
Q Consensus 540 ~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~g~~~eA~~~ 617 (830)
+++|+..|++..+ +.|+.. .+..+..++...|++++|...++... .+.|+. ..+..+...+...|++++|++.
T Consensus 354 ~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al---~l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECL---KLDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 9999999999998 567765 57777788999999999999999987 456653 2333445567778999999999
Q ss_pred HHhCC--CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 618 IEMMP--VAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 618 ~~~m~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
+++.- ..|+ +..+..+...+...|+.++|+..++++....|++......|+..|...| ++|...++.+.+
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 98862 2354 4556667777889999999999999999899998888888999999888 577776666554
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.4e-06 Score=88.90 Aligned_cols=347 Identities=14% Similarity=0.097 Sum_probs=219.3
Q ss_pred HHHHHHhhcCCChHHHHHHHhhcCCC-CeehHHHHHHHHHhcCC-hhH--------------HHHHHHHHHHcC------
Q 047408 306 NTLLDMYSKCGDLDGAIRVFEKMGER-SVVSWTSMIAGYAREGV-FDG--------------AIRLFRGMVREG------ 363 (830)
Q Consensus 306 ~~Li~~y~k~g~~~~A~~~f~~m~~~-d~~~~~~li~~~~~~g~-~~~--------------A~~l~~~m~~~g------ 363 (830)
--.+..|-..++-+.|.....+.+.. ...--|.|+.-+-+.|- -.+ |++.+.-..+.+
T Consensus 101 r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~ 180 (564)
T KOG1174|consen 101 RRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEI 180 (564)
T ss_pred HHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhh
Confidence 44566677778888888888887763 33334444444333331 111 222222222222
Q ss_pred ---------CCCCcchHHHHHHHhh--ccCcchhhhhHHHHHHh-hcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCC
Q 047408 364 ---------IEPDVYAITSILHACA--CDGLLEIGKDVHDYIKE-NDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPV 431 (830)
Q Consensus 364 ---------~~pd~~t~~~ll~a~~--~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~ 431 (830)
+.|+..+...-+.+++ ..++-..+.+.+..+.+ .-++.|+....++.+.|...|+.++|...|++...
T Consensus 181 ~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~ 260 (564)
T KOG1174|consen 181 NSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC 260 (564)
T ss_pred hhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh
Confidence 2333334444444433 23444444444444443 34677889999999999999999999999999877
Q ss_pred CCchhHHHHHHHHHHHHHHHh-CC--C-----------CCccc---cccchhhhcchhhHHHHHHHHHHHHHhCCCCchh
Q 047408 432 KDIVSWNTMIGALDLFVAMLQ-NF--E-----------PDGVT---MACILPACASLAALERGREIHGYILRHGISADRN 494 (830)
Q Consensus 432 ~~~~~~n~~i~al~~f~~m~~-~~--~-----------pd~~t---~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~ 494 (830)
-|+.+-.+| ++|.-+.. +| . -+..| +..-+.......+.+.|..+-+..++.. +.+..
T Consensus 261 ~dpy~i~~M----D~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~ 335 (564)
T KOG1174|consen 261 ANPDNVEAM----DLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHE 335 (564)
T ss_pred CChhhhhhH----HHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccch
Confidence 776554444 22222211 11 0 11111 1111222234455666666665555533 12233
Q ss_pred HHhHHHHHHHhcCCHHHHHHHhhhCC--C-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHH-HHHH
Q 047408 495 VANAIVDMYVKCGVLVLARSLFDMIP--A-KDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVL-YACS 570 (830)
Q Consensus 495 ~~~~Li~~y~k~g~~~~A~~~f~~m~--~-~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll-~a~~ 570 (830)
.+-.-...+...|+.++|.-.|+... . -+..+|.-++..|...|...||+-+-+...+. +.-+..+..-+. ..|.
T Consensus 336 alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~ 414 (564)
T KOG1174|consen 336 ALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLF 414 (564)
T ss_pred HHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeec
Confidence 33333456677899999999998654 3 47889999999999999999999888776653 333344444331 2332
Q ss_pred -ccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047408 571 -HSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPDATIWGSLLCGCRIHHEVKLAE 647 (830)
Q Consensus 571 -~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~ 647 (830)
....-++|+.+++.-. .+.|+ ....+.+..++.+.|+.+++..++++. ...||....+.|....+..+.+++|.
T Consensus 415 ~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am 491 (564)
T KOG1174|consen 415 PDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAM 491 (564)
T ss_pred cCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHH
Confidence 2334577888888754 66776 566777888899999999999999886 67889999999999999999999999
Q ss_pred HHHHHHhccCCCCc
Q 047408 648 KVAEHVFELEPDNT 661 (830)
Q Consensus 648 ~~~~~~~~l~p~~~ 661 (830)
..|..++.++|++-
T Consensus 492 ~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 492 EYYYKALRQDPKSK 505 (564)
T ss_pred HHHHHHHhcCccch
Confidence 99999999999874
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.4e-06 Score=95.91 Aligned_cols=375 Identities=18% Similarity=0.130 Sum_probs=242.3
Q ss_pred hCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCC---CCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHH
Q 047408 296 ACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGE---RSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAIT 372 (830)
Q Consensus 296 ~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 372 (830)
..+..|..+|..|.-+...+|+++.+-+.|++... .....|+.+-..|...|....|+.++++-....-.|+..+-.
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34567888889999999999999999999998654 345679999999999999999999998876543335544443
Q ss_pred HHHH-Hhh-ccCcchhhhhHHHHHHhhc--C--CCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHH----
Q 047408 373 SILH-ACA-CDGLLEIGKDVHDYIKEND--M--QSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIG---- 442 (830)
Q Consensus 373 ~ll~-a~~-~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~---- 442 (830)
.+.. .|. +.+.+++|..+-..++... . ......+-.+.-+|...-. ...+|+--..
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~--------------~a~~~seR~~~h~k 462 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR--------------QANLKSERDALHKK 462 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh--------------cCCChHHHHHHHHH
Confidence 3333 343 4567777777776666521 1 1112333334334432210 0001111000
Q ss_pred HHHHHHHHHhCC--CCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC
Q 047408 443 ALDLFVAMLQNF--EPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP 520 (830)
Q Consensus 443 al~~f~~m~~~~--~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~ 520 (830)
++..+++-.+-+ .|+..-|.++ -++..++++.|.+...+..+.+-..+...+.-|.-.+.-.+++.+|..+.+...
T Consensus 463 slqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al 540 (799)
T KOG4162|consen 463 SLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL 540 (799)
T ss_pred HHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 334444443333 4444444333 346677889999999988888667788888888888888899999988887542
Q ss_pred C--CC---------------------hhhHHHHHHHHH-----------------------hcCChHHHHHHHHHHH---
Q 047408 521 A--KD---------------------LISWTIMIAGYG-----------------------MHGFGCDAIATFNDMR--- 551 (830)
Q Consensus 521 ~--~d---------------------~~~~~~li~~~~-----------------------~~g~~~~A~~l~~~m~--- 551 (830)
. ++ +.|...++...- .+++..+|.+..++..
T Consensus 541 ~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~ 620 (799)
T KOG4162|consen 541 EEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLV 620 (799)
T ss_pred HHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHH
Confidence 1 11 111111111111 0112222222222211
Q ss_pred -----HcC---------CC--CChh------HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhc
Q 047408 552 -----QAG---------IE--PDEV------SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRT 608 (830)
Q Consensus 552 -----~~g---------~~--Pd~~------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~ 608 (830)
..| +. |+.. .+......+...+..++|+..+.+.. ++.|- ...|.-....+...
T Consensus 621 a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~ 697 (799)
T KOG4162|consen 621 ASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVK 697 (799)
T ss_pred HhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHH
Confidence 011 11 2211 12233355667777788876665554 44453 45666677888899
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHH
Q 047408 609 GNLSEAYRFIEMM-PVAPD-ATIWGSLLCGCRIHHEVKLAEK--VAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLR 684 (830)
Q Consensus 609 g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~ 684 (830)
|+++||.+.|... .+.|| +.+..+|...+...|+-..|+. +...+++++|.++.+|..|+.++-+.|+.++|.+-+
T Consensus 698 ~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf 777 (799)
T KOG4162|consen 698 GQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECF 777 (799)
T ss_pred HhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHH
Confidence 9999999988775 77886 5688889889999999888888 999999999999999999999999999999999998
Q ss_pred HHHHh
Q 047408 685 EKISR 689 (830)
Q Consensus 685 ~~m~~ 689 (830)
....+
T Consensus 778 ~aa~q 782 (799)
T KOG4162|consen 778 QAALQ 782 (799)
T ss_pred HHHHh
Confidence 87654
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.2e-05 Score=84.80 Aligned_cols=328 Identities=16% Similarity=0.193 Sum_probs=161.0
Q ss_pred CcchhHHHHHHHhcCChHHHHHHHHHhhcCCCCh---hhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCccchHHHHH
Q 047408 63 TKNYNAEIGRFCEVGNLEKAMEVLYSSEKSKIDT---KTYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLGSKLV 139 (830)
Q Consensus 63 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li 139 (830)
+..|-.-+..+..+|+.......|++.+..=|-. ..+...++-..+.+-++.+..++++-++-. +...+-.|
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~-----P~~~eeyi 176 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA-----PEAREEYI 176 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC-----HHHHHHHH
Confidence 3445555555555555555555555544332211 144444444444444555555555554421 22234445
Q ss_pred HHHHhCCChHHHHHHHhcCC--------------------------------------------CC--C--cchHHHHHH
Q 047408 140 FMFVTCGDLKEGRRVFNKID--------------------------------------------NG--K--VFIWNLLMH 171 (830)
Q Consensus 140 ~~y~~~g~~~~A~~~f~~m~--------------------------------------------~~--~--~~~~~~li~ 171 (830)
.-+++.+++++|.+.+..+. .+ | -..|++|..
T Consensus 177 e~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 177 EYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLAD 256 (835)
T ss_pred HHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHH
Confidence 55555555555544444332 11 1 146788888
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHhhCC------CCCcchHHHHHHHHHhC
Q 047408 172 EYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRRVKDAHKLFDELS------DRDVVSWNCMISGYIAN 245 (830)
Q Consensus 172 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~A~~lf~~m~------~~~~~~~n~li~~~~~~ 245 (830)
-|.+.|.++.|.++|++.... ...+.-|+.+.++|+.... -.-+.++ + +. +.+.+.+
T Consensus 257 YYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE---~~~~~~m-e-~a~~~~~n~ed~~dl---------- 319 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEE---SCVAAKM-E-LADEESGNEEDDVDL---------- 319 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHH---HHHHHHH-h-hhhhcccChhhhhhH----------
Confidence 888888888888888776553 2344456666666654321 0000000 0 00 1111211
Q ss_pred CChhHHHHHHHHHHHCC----------CCC-ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhC-----CCCCchHHHHHH
Q 047408 246 GVAEKGLEVFKEMLNLG----------FNV-DLATMVTVLSGCANCGALMFGRAVHAFALKAC-----FSKEISFNNTLL 309 (830)
Q Consensus 246 g~~~~A~~l~~~m~~~g----------~~p-d~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g-----~~~~~~~~~~Li 309 (830)
+-.+.-|+.+...+ -.| +..++..-++. ..|+..+-...+..+++.- ...-...|..+.
T Consensus 320 ---~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~fa 394 (835)
T KOG2047|consen 320 ---ELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFA 394 (835)
T ss_pred ---HHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHH
Confidence 22233333333221 011 12222222221 1233444444555555431 112234577888
Q ss_pred HHhhcCCChHHHHHHHhhcCCCCe-------ehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccC
Q 047408 310 DMYSKCGDLDGAIRVFEKMGERSV-------VSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDG 382 (830)
Q Consensus 310 ~~y~k~g~~~~A~~~f~~m~~~d~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~ 382 (830)
+.|-..|+++.|+.+|++...-+- ..|......=.+..+++.|+.+.+.... .|.... +..+ ..+
T Consensus 395 klYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~---vP~~~~----~~~y-d~~ 466 (835)
T KOG2047|consen 395 KLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH---VPTNPE----LEYY-DNS 466 (835)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc---CCCchh----hhhh-cCC
Confidence 999999999999999998866332 2455555555667778888887766543 233211 1111 111
Q ss_pred cchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCch
Q 047408 383 LLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIV 435 (830)
Q Consensus 383 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~ 435 (830)
. -+-.. +-.+..+|.-+++.--.+|-++....+++.+.+.-+.
T Consensus 467 ~-----pvQ~r-----lhrSlkiWs~y~DleEs~gtfestk~vYdriidLria 509 (835)
T KOG2047|consen 467 E-----PVQAR-----LHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA 509 (835)
T ss_pred C-----cHHHH-----HHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC
Confidence 1 00000 1123445666666666666677777777666554433
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.8e-07 Score=101.01 Aligned_cols=246 Identities=17% Similarity=0.203 Sum_probs=129.8
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHhhcCC----------CCee-hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchH
Q 047408 303 SFNNTLLDMYSKCGDLDGAIRVFEKMGE----------RSVV-SWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAI 371 (830)
Q Consensus 303 ~~~~~Li~~y~k~g~~~~A~~~f~~m~~----------~d~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 371 (830)
.+..-|..+|...|+++.|..+|....+ +.+. .-+.+...|...+++++|..+|+++..-
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i--------- 270 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI--------- 270 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---------
Confidence 3444577777777777777777765432 1221 2233556677777888888887777541
Q ss_pred HHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHH
Q 047408 372 TSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAML 451 (830)
Q Consensus 372 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~ 451 (830)
.....-...+.-..+++.|...|.+.|++++|...+++. ++++.+.
T Consensus 271 -------------------~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~A--------------l~I~~~~- 316 (508)
T KOG1840|consen 271 -------------------REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERA--------------LEIYEKL- 316 (508)
T ss_pred -------------------HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHH--------------HHHHHHh-
Confidence 000000001112346677778899999999999887652 2222220
Q ss_pred hCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCC-CCc-hhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHH
Q 047408 452 QNFEPDGVTMACILPACASLAALERGREIHGYILRHGI-SAD-RNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTI 529 (830)
Q Consensus 452 ~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~-~~~-~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~ 529 (830)
.|. .+. ....+.++..|...+++++|..+++.
T Consensus 317 -----------------------------------~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~----------- 350 (508)
T KOG1840|consen 317 -----------------------------------LGASHPEVAAQLSELAAILQSMNEYEEAKKLLQK----------- 350 (508)
T ss_pred -----------------------------------hccChHHHHHHHHHHHHHHHHhcchhHHHHHHHH-----------
Confidence 110 111 11223344445555555555555532
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCh----hHHHHHHHHHHccCCHHHHHHHHHHhHhhc-----CCCCC-cchHH
Q 047408 530 MIAGYGMHGFGCDAIATFNDMRQAGIEPDE----VSFISVLYACSHSGLVDEGWRFFNMMRYEC-----NIEPK-LEHYA 599 (830)
Q Consensus 530 li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p~-~~~y~ 599 (830)
|++++... +.++. -++..+...+-+.|.+++|.++|++..+.. +..+. ..+++
T Consensus 351 -------------al~i~~~~----~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~ 413 (508)
T KOG1840|consen 351 -------------ALKIYLDA----PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLN 413 (508)
T ss_pred -------------HHHHHHhh----ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHH
Confidence 11111100 11222 134444444444444444444444433221 11111 23445
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC--------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047408 600 CMVDLLSRTGNLSEAYRFIEMM--------PVAPDA-TIWGSLLCGCRIHHEVKLAEKVAEHVF 654 (830)
Q Consensus 600 ~lv~~l~r~g~~~eA~~~~~~m--------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~ 654 (830)
-|...|.+.++.++|.++|.+. |..|+. .+|..|...|+..|++|.|+++.++++
T Consensus 414 ~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 414 QLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 5555566666666665555543 345554 678888888888889888888888776
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.8e-08 Score=97.33 Aligned_cols=198 Identities=16% Similarity=0.114 Sum_probs=136.5
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHH
Q 047408 402 SLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIH 481 (830)
Q Consensus 402 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~ 481 (830)
....+..+...|.+.|++++|...|++....+
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~------------------------------------------------ 61 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD------------------------------------------------ 61 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------------------------------------------------
Confidence 34566777788888888888888777653221
Q ss_pred HHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 047408 482 GYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPD 558 (830)
Q Consensus 482 ~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd 558 (830)
+.+...+..+...|...|++++|.+.|++.. ..+...|..+...|...|++++|++.|++.......|.
T Consensus 62 --------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 133 (234)
T TIGR02521 62 --------PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQ 133 (234)
T ss_pred --------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc
Confidence 2234455666677777777777777777554 33455677777778888888888888888876432232
Q ss_pred -hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 047408 559 -EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLL 634 (830)
Q Consensus 559 -~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll 634 (830)
...+..+...+...|++++|.+.|+.... ..|+ ...+..+...+...|++++|.+.+++. ...| +...+..+.
T Consensus 134 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 210 (234)
T TIGR02521 134 PARSLENAGLCALKAGDFDKAEKYLTRALQ---IDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGI 210 (234)
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 23455566677788888888888887763 2343 556777888888888888888888775 2223 455666667
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCC
Q 047408 635 CGCRIHHEVKLAEKVAEHVFELEP 658 (830)
Q Consensus 635 ~~~~~~g~~~~a~~~~~~~~~l~p 658 (830)
..+...|+.+.|....+.+.+..|
T Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 211 RIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHhhHHHHHHHHHHHHhhCc
Confidence 777888888888888777765543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=6e-07 Score=91.80 Aligned_cols=283 Identities=12% Similarity=0.054 Sum_probs=158.8
Q ss_pred CCChHHHHHHHhhcCC---CCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHH
Q 047408 315 CGDLDGAIRVFEKMGE---RSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVH 391 (830)
Q Consensus 315 ~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~ 391 (830)
.|++..|+++..+-.+ ..+..|..-+.+--+.|+.+.|-.++.+..+.--.++...+.+........|+...|+.-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 4889999888877544 2334455555666677899999999888876422333444455555677888888888888
Q ss_pred HHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcch
Q 047408 392 DYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASL 471 (830)
Q Consensus 392 ~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~ 471 (830)
..+.+.+ +.+..+.......|.+.|++.+...+...+.+.++.+-.-+
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~------------------------------- 224 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA------------------------------- 224 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH-------------------------------
Confidence 8888777 55677888899999999999999999888877654321111
Q ss_pred hhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHH
Q 047408 472 AALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFN 548 (830)
Q Consensus 472 ~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~ 548 (830)
.++ ...+++.+++-....+..+.-...++..+ +.++..-.+++.-+.+.|+.++|.++..
T Consensus 225 ------~~l-----------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~ 287 (400)
T COG3071 225 ------ARL-----------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIE 287 (400)
T ss_pred ------HHH-----------HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHH
Confidence 000 11223333333333333333333444444 2245555566666667777777777777
Q ss_pred HHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH
Q 047408 549 DMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPDA 627 (830)
Q Consensus 549 ~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~ 627 (830)
+-.+.+..|+-.+ +..|.+-++...=.+..+.-.+.++-.| ..+.+|..+|.+.+.|.+|.+.|+.. +..|+.
T Consensus 288 ~~Lk~~~D~~L~~----~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~ 361 (400)
T COG3071 288 DALKRQWDPRLCR----LIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSA 361 (400)
T ss_pred HHHHhccChhHHH----HHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh
Confidence 7777666666222 2233444444443333333333333333 33334444444444444444444432 334444
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH
Q 047408 628 TIWGSLLCGCRIHHEVKLAEKVAEH 652 (830)
Q Consensus 628 ~~~~~ll~~~~~~g~~~~a~~~~~~ 652 (830)
..|+-+..++...|+.++|..+.++
T Consensus 362 ~~~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 362 SDYAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred hhHHHHHHHHHHcCChHHHHHHHHH
Confidence 4444444444444444444444433
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3e-07 Score=91.07 Aligned_cols=293 Identities=16% Similarity=0.169 Sum_probs=168.7
Q ss_pred cCChhHHHHHHHHHHHcCCCCC-cchHHHHHHHhhccCcchhhhhHHHHHHhhc-CCC--chhhHHHHHHHHHhcCChHH
Q 047408 346 EGVFDGAIRLFRGMVREGIEPD-VYAITSILHACACDGLLEIGKDVHDYIKEND-MQS--SLYVSNALMDMYAKCGSMAD 421 (830)
Q Consensus 346 ~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~~~--~~~~~~~Li~~y~k~g~~~~ 421 (830)
+.++++|+++|-+|.+. .|. ..+-.+|-+.+.+.|..+.|..+|..+.+.- +.. -..+...|..=|.+.|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 46778888888888763 122 2223455556777788888888887776542 111 12344567778889999999
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCc----hhHHh
Q 047408 422 AESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISAD----RNVAN 497 (830)
Q Consensus 422 A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~----~~~~~ 497 (830)
|+.+|..+.+.+... ....--++..|-...++++|..+-..+.+.+-.+. ...|.
T Consensus 126 AE~~f~~L~de~efa---------------------~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyC 184 (389)
T COG2956 126 AEDIFNQLVDEGEFA---------------------EGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYC 184 (389)
T ss_pred HHHHHHHHhcchhhh---------------------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHH
Confidence 999998876643321 22333456666677777777777777777654332 22344
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCCCCCh---hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh--HHHHHHHHHHcc
Q 047408 498 AIVDMYVKCGVLVLARSLFDMIPAKDL---ISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV--SFISVLYACSHS 572 (830)
Q Consensus 498 ~Li~~y~k~g~~~~A~~~f~~m~~~d~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~--t~~~ll~a~~~~ 572 (830)
-|...+.-..+++.|..++.+..+-|. -.=-.+...+...|++..|++.++...+. .|+.+ +...|..+|.+.
T Consensus 185 ELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ--n~~yl~evl~~L~~~Y~~l 262 (389)
T COG2956 185 ELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ--NPEYLSEVLEMLYECYAQL 262 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHh
Confidence 455555555667777777766543222 22222334556667777777777777664 34433 455566666777
Q ss_pred CCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047408 573 GLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRF-IEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAE 651 (830)
Q Consensus 573 g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~-~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 651 (830)
|+.+++..++..+.+ ..+..+.-..|.+......-.++|... .+...-+|+...+..|+..-..
T Consensus 263 g~~~~~~~fL~~~~~---~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~------------ 327 (389)
T COG2956 263 GKPAEGLNFLRRAME---TNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLA------------ 327 (389)
T ss_pred CCHHHHHHHHHHHHH---ccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhc------------
Confidence 777777766666552 234444444444444433344444433 2334445555544444432111
Q ss_pred HHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCcCCCc
Q 047408 652 HVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNPG 697 (830)
Q Consensus 652 ~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~~ 697 (830)
=+..|+|.+...+.+.|....++..|.
T Consensus 328 -------------------daeeg~~k~sL~~lr~mvge~l~~~~~ 354 (389)
T COG2956 328 -------------------DAEEGRAKESLDLLRDMVGEQLRRKPR 354 (389)
T ss_pred -------------------cccccchhhhHHHHHHHHHHHHhhcCC
Confidence 123355777777777777666666554
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-06 Score=91.30 Aligned_cols=404 Identities=10% Similarity=0.037 Sum_probs=235.2
Q ss_pred hHHHHHHHhcCChHHHHHHHHHhhcCCCC-hhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCccchHHHHHHHHHhC
Q 047408 67 NAEIGRFCEVGNLEKAMEVLYSSEKSKID-TKTYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMFVTC 145 (830)
Q Consensus 67 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li~~y~~~ 145 (830)
-..-.-+-++|++++|+..|.......|+ |.-|.....+|...|+++...+--...++ +.|+-+-++..-.+++-..
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAHEQL 196 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHHhh
Confidence 34445678999999999999999999888 77888888888899999988887777776 4455455566666677778
Q ss_pred CChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHH---------HHHcC--CCCCcccHHHHHHHHHhcCCC
Q 047408 146 GDLKEGRRVFNKIDNGKVFIWNLLMHEYSKTGNFKESLYLFKK---------MQSLG--IAADSYTFSCVLKCLAVVGNS 214 (830)
Q Consensus 146 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~---------m~~~g--~~p~~~t~~~ll~~~~~~g~~ 214 (830)
|++++|+. | +|-..+..++..+.-..-+.+++.+ |.+.+ +-|+.....+.+..+...-.
T Consensus 197 g~~~eal~--D-------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~- 266 (606)
T KOG0547|consen 197 GKFDEALF--D-------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPK- 266 (606)
T ss_pred ccHHHHHH--h-------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccc-
Confidence 88887743 2 2223333333333222233333332 11111 22333333333322211000
Q ss_pred CCHHHHHHHHhhCCCCCcchHHHHHHHHH----h-CCChhHHHHHHHHHHHC-CCCCChh---------hHHHHHHH--H
Q 047408 215 RRVKDAHKLFDELSDRDVVSWNCMISGYI----A-NGVAEKGLEVFKEMLNL-GFNVDLA---------TMVTVLSG--C 277 (830)
Q Consensus 215 ~~~~~A~~lf~~m~~~~~~~~n~li~~~~----~-~g~~~~A~~l~~~m~~~-g~~pd~~---------t~~~ll~a--~ 277 (830)
.. +..+...+.-.+..++- . ...+..|.+.+.+-... -..++.- .-..++.+ .
T Consensus 267 -------~~---~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~ 336 (606)
T KOG0547|consen 267 -------PL---FDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFH 336 (606)
T ss_pred -------cc---ccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhh
Confidence 00 00000011111111111 0 01223333333221110 0001100 11112222 2
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCC---CCeehHHHHHHHHHhcCChhHHHH
Q 047408 278 ANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGE---RSVVSWTSMIAGYAREGVFDGAIR 354 (830)
Q Consensus 278 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~ 354 (830)
.-.|+.-.+.+-++.+++....++. .|--+..+|....+.++-.+.|+.... .|..+|..-...+.-.+++++|+.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 2356777777777777776543332 255666778888888999999987754 345566666666666778899999
Q ss_pred HHHHHHHcCCCCC-cchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCC
Q 047408 355 LFRGMVREGIEPD-VYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKD 433 (830)
Q Consensus 355 l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~ 433 (830)
=|++.+.. .|+ .+.|.-+--+.-+.+.+++....|+..++. ++.-+.+||-....+...+++++|.+.|+...+..
T Consensus 416 DF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 416 DFQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 99988763 443 445666655666788899999999988765 57778899999999999999999999998754321
Q ss_pred c----h--hHHHHHH-HHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhc
Q 047408 434 I----V--SWNTMIG-ALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKC 506 (830)
Q Consensus 434 ~----~--~~n~~i~-al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~ 506 (830)
. + .-..+|. |+-++ --.+++..|.++...+++..- -....+-.|..+-.+.
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~---------------------qwk~d~~~a~~Ll~KA~e~Dp-kce~A~~tlaq~~lQ~ 550 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVL---------------------QWKEDINQAENLLRKAIELDP-KCEQAYETLAQFELQR 550 (606)
T ss_pred cccccccccchhhhhhhHhhh---------------------chhhhHHHHHHHHHHHHccCc-hHHHHHHHHHHHHHHH
Confidence 1 1 1111111 11111 123788889999888887552 2345666677777777
Q ss_pred CCHHHHHHHhhh
Q 047408 507 GVLVLARSLFDM 518 (830)
Q Consensus 507 g~~~~A~~~f~~ 518 (830)
|++++|.++|++
T Consensus 551 ~~i~eAielFEk 562 (606)
T KOG0547|consen 551 GKIDEAIELFEK 562 (606)
T ss_pred hhHHHHHHHHHH
Confidence 777777777743
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.4e-05 Score=83.13 Aligned_cols=259 Identities=17% Similarity=0.168 Sum_probs=166.0
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHH
Q 047408 342 GYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMAD 421 (830)
Q Consensus 342 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~ 421 (830)
+-....++.+|+.+++.++.... -.--|..+..-|+..|+++.|+++|-+. ..++--|+||.+.|++++
T Consensus 741 aai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 741 AAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHH
Confidence 34445556666666665554322 2223444555566666666666655432 123445666666666666
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHH
Q 047408 422 AESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVD 501 (830)
Q Consensus 422 A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~ 501 (830)
|.++-.+...+ +.....|-+-..
T Consensus 810 a~kla~e~~~~---------------------------------------------------------e~t~~~yiakae 832 (1636)
T KOG3616|consen 810 AFKLAEECHGP---------------------------------------------------------EATISLYIAKAE 832 (1636)
T ss_pred HHHHHHHhcCc---------------------------------------------------------hhHHHHHHHhHH
Confidence 66655443322 223344444555
Q ss_pred HHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh--HHHHHHHHHHccCCHHHHH
Q 047408 502 MYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV--SFISVLYACSHSGLVDEGW 579 (830)
Q Consensus 502 ~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~--t~~~ll~a~~~~g~~~~a~ 579 (830)
-.-+.|++.+|.+++-.+..||. .|..|-++|..++.+.+.++- .||.. |-..+..-+...|++.+|.
T Consensus 833 dldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~-----h~d~l~dt~~~f~~e~e~~g~lkaae 902 (1636)
T KOG3616|consen 833 DLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKH-----HGDHLHDTHKHFAKELEAEGDLKAAE 902 (1636)
T ss_pred hHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHh-----ChhhhhHHHHHHHHHHHhccChhHHH
Confidence 56678999999999988888875 478899999999999888763 45543 6666777788899999999
Q ss_pred HHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCC---CC-CHHHHHHH------HHHHHhcCCHHHHHHH
Q 047408 580 RFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMPV---AP-DATIWGSL------LCGCRIHHEVKLAEKV 649 (830)
Q Consensus 580 ~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~---~p-~~~~~~~l------l~~~~~~g~~~~a~~~ 649 (830)
+.|-... -|.+-|++|-.+|.|++|..+-+.-+- +. -...|.-- ...+.+||-++.|...
T Consensus 903 ~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~ 972 (1636)
T KOG3616|consen 903 EHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDF 972 (1636)
T ss_pred HHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhh
Confidence 8886653 367889999999999999998876531 11 12445422 2345677777777653
Q ss_pred H------HHHhc-----cCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 650 A------EHVFE-----LEPDNTGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 650 ~------~~~~~-----l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
+ +-+++ ....-+..++.++--+...|++++|.+-+-+..
T Consensus 973 a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveai 1022 (1636)
T KOG3616|consen 973 AADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAI 1022 (1636)
T ss_pred hhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHh
Confidence 2 22222 223345678888888999999999977655443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.8e-08 Score=101.97 Aligned_cols=211 Identities=14% Similarity=0.052 Sum_probs=150.1
Q ss_pred hhHHHHHHHHHHHHHhC-CCC--chhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHH
Q 047408 472 AALERGREIHGYILRHG-ISA--DRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIA 545 (830)
Q Consensus 472 ~~~~~a~~i~~~~~~~g-~~~--~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~ 545 (830)
+..+.+..-+..++... ..+ ....+..+...|.+.|+.++|...|++.. ..+...|+.+...|...|++++|++
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 45566666666666432 222 24567788888999999999999998764 3467899999999999999999999
Q ss_pred HHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC--C
Q 047408 546 TFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM--P 622 (830)
Q Consensus 546 l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m--~ 622 (830)
.|++..+ +.|+.. ++..+..++...|++++|.+.|+.... ..|+..........+...++.++|.+.+++. .
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999998 678754 677788888899999999999998873 4565432233333455678899999999664 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh-------ccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCC
Q 047408 623 VAPDATIWGSLLCGCRIHHEVKLAEKVAEHVF-------ELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRG 691 (830)
Q Consensus 623 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g 691 (830)
..|+...|. + .....|+...+ ..++.+. ++.|+.+..|..|+.+|...|++++|...+++..+.+
T Consensus 195 ~~~~~~~~~-~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 195 LDKEQWGWN-I--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CCccccHHH-H--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 233332231 2 22234444333 2333332 4566777889999999999999999999998877533
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.5e-06 Score=92.46 Aligned_cols=128 Identities=15% Similarity=0.102 Sum_probs=66.7
Q ss_pred CHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 047408 216 RVKDAHKLFDELSDRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALK 295 (830)
Q Consensus 216 ~~~~A~~lf~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~ 295 (830)
.+.+|..+|-+-.. -..-|..|....++++|+.+-+. .|.+.-...-.+.++++...|.-+.+-++-
T Consensus 546 kfk~ae~ifleqn~-----te~aigmy~~lhkwde~i~lae~---~~~p~~eklk~sy~q~l~dt~qd~ka~elk----- 612 (1636)
T KOG3616|consen 546 KFKEAEMIFLEQNA-----TEEAIGMYQELHKWDEAIALAEA---KGHPALEKLKRSYLQALMDTGQDEKAAELK----- 612 (1636)
T ss_pred hhhHHHHHHHhccc-----HHHHHHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHHHHHHHhcCchhhhhhhc-----
Confidence 46677776654211 12234455555556666655332 122222222334455555555444433321
Q ss_pred hCCCCCchHHHHHHHHhhcCCChHHHHHHHhh--cCCCCeehHHHHHHHHHhcCChhHHHHHHHHHH
Q 047408 296 ACFSKEISFNNTLLDMYSKCGDLDGAIRVFEK--MGERSVVSWTSMIAGYAREGVFDGAIRLFRGMV 360 (830)
Q Consensus 296 ~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~--m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 360 (830)
..+-. .-+-|..|.|.|.+..|.+.-.. -...|......+..++.+...+++|-++|+++.
T Consensus 613 ---~sdgd-~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~ 675 (1636)
T KOG3616|consen 613 ---ESDGD-GLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIH 675 (1636)
T ss_pred ---cccCc-cHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhh
Confidence 11111 24568889999998888765422 122355555556666667667777777777664
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1e-07 Score=90.27 Aligned_cols=162 Identities=16% Similarity=0.133 Sum_probs=139.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHH
Q 047408 526 SWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVD 603 (830)
Q Consensus 526 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~ 603 (830)
+...+..+|.+.|+...|..-+++.++ ..|+.. ++..+...|.+.|..+.|.+.|+... .+.|+ .++.|....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhH
Confidence 344566789999999999999999988 677776 78888888999999999999998877 56774 678888889
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHH
Q 047408 604 LLSRTGNLSEAYRFIEMMPVAPD----ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEE 679 (830)
Q Consensus 604 ~l~r~g~~~eA~~~~~~m~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 679 (830)
-|+..|++++|...|++.-..|+ ..+|..+..+-.+.|+.+.|+..+++.++++|+++.....+++.....|++-+
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 99999999999999998733333 46788888877889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 047408 680 VKKLREKISRRGL 692 (830)
Q Consensus 680 A~~~~~~m~~~g~ 692 (830)
|.-.++....+|.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999988877665
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.4e-06 Score=83.78 Aligned_cols=220 Identities=13% Similarity=0.105 Sum_probs=165.4
Q ss_pred cccccchhhhcchhhHHHHHHHHHHHHHhC-CCCc--hhHHhHHHHHHHhcCCHHHHHHHhhhCCCCCh---hhHHHHHH
Q 047408 459 VTMACILPACASLAALERGREIHGYILRHG-ISAD--RNVANAIVDMYVKCGVLVLARSLFDMIPAKDL---ISWTIMIA 532 (830)
Q Consensus 459 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g-~~~~--~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~---~~~~~li~ 532 (830)
.+-.++-+-+-+.|..+.|..+|.-+.++. .+.+ ....-.|..=|.+.|-+|.|+.+|..+...+. ...-.++.
T Consensus 70 e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~ 149 (389)
T COG2956 70 EAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLN 149 (389)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 344456677778899999999999988743 2211 34455678889999999999999999876444 35566899
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChhH----HHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHh
Q 047408 533 GYGMHGFGCDAIATFNDMRQAGIEPDEVS----FISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSR 607 (830)
Q Consensus 533 ~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t----~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r 607 (830)
.|-+..++++|++.-+++.+.|-++..+- |.-+........+++.|+..+....+ ..|+ +..--.+.+.+..
T Consensus 150 IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlq---a~~~cvRAsi~lG~v~~~ 226 (389)
T COG2956 150 IYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQ---ADKKCVRASIILGRVELA 226 (389)
T ss_pred HHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHh---hCccceehhhhhhHHHHh
Confidence 99999999999999999999776666652 45556666777899999999988763 3454 4445567889999
Q ss_pred cCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHH
Q 047408 608 TGNLSEAYRFIEMM-PVAPD--ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKK 682 (830)
Q Consensus 608 ~g~~~eA~~~~~~m-~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~ 682 (830)
.|+++.|.+.++.. .-.|+ +.+...|..+|.+.|+.++++..+.++.+..|... .-..|..+-....-.++|..
T Consensus 227 ~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~-~~l~l~~lie~~~G~~~Aq~ 303 (389)
T COG2956 227 KGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD-AELMLADLIELQEGIDAAQA 303 (389)
T ss_pred ccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc-HHHHHHHHHHHhhChHHHHH
Confidence 99999999999887 34555 35788899999999999999999999999888754 33444444443333344433
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.6e-05 Score=79.80 Aligned_cols=180 Identities=13% Similarity=0.145 Sum_probs=118.5
Q ss_pred HhHHHHHHHhcCCHHHHHHHhhhCCCCC-hhhHHHHHHHH-H-hcCChHHHHHHHHHHHHcCCCCChhH--HHHHHHHHH
Q 047408 496 ANAIVDMYVKCGVLVLARSLFDMIPAKD-LISWTIMIAGY-G-MHGFGCDAIATFNDMRQAGIEPDEVS--FISVLYACS 570 (830)
Q Consensus 496 ~~~Li~~y~k~g~~~~A~~~f~~m~~~d-~~~~~~li~~~-~-~~g~~~~A~~l~~~m~~~g~~Pd~~t--~~~ll~a~~ 570 (830)
-++|+.+|. +..+.++++-...+..- ...+.+++... - +...+.+|.+++...-+. .|+... ....+.-..
T Consensus 312 N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~i 387 (652)
T KOG2376|consen 312 NNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKI 387 (652)
T ss_pred HHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHH
Confidence 356677765 45677788777776433 33444444332 2 223577888888777663 455533 333344567
Q ss_pred ccCCHHHHHHHHH--------HhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCCH-HHHHHH
Q 047408 571 HSGLVDEGWRFFN--------MMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM--------PVAPDA-TIWGSL 633 (830)
Q Consensus 571 ~~g~~~~a~~~~~--------~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m--------~~~p~~-~~~~~l 633 (830)
..|+++.|.+++. ... .+.-.+.+.+.++.+|.+.+.-+-|.+++.+. +-++.. .+|.-+
T Consensus 388 s~gn~~~A~~il~~~~~~~~ss~~---~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~a 464 (652)
T KOG2376|consen 388 SQGNPEVALEILSLFLESWKSSIL---EAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREA 464 (652)
T ss_pred hcCCHHHHHHHHHHHhhhhhhhhh---hhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHH
Confidence 7899999999988 443 22233466778899999888766565555543 333322 344444
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHH
Q 047408 634 LCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKL 683 (830)
Q Consensus 634 l~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~ 683 (830)
..--.++|+-++|...++++++..|++....+.++-.|++.. .+.|..+
T Consensus 465 a~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l 513 (652)
T KOG2376|consen 465 AEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESL 513 (652)
T ss_pred hHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHH
Confidence 444467799999999999999999999999999999998753 4555554
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=9.2e-07 Score=92.91 Aligned_cols=209 Identities=11% Similarity=-0.071 Sum_probs=150.4
Q ss_pred ccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHh
Q 047408 460 TMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGM 536 (830)
Q Consensus 460 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~ 536 (830)
.+......+...|+.++|...+..+++.. +.+...++.+...|...|++++|...|++.. ..+...|..+...+..
T Consensus 66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 66 LHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35555566778899999999999998865 4568899999999999999999999999875 3356788999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHH--H
Q 047408 537 HGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSE--A 614 (830)
Q Consensus 537 ~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~e--A 614 (830)
.|++++|++.|++..+ ..|+.......+..+...++.++|.+.|..... ...|+... ..++..+ .|++.+ +
T Consensus 145 ~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~~~~~~~-~~~~~~~--lg~~~~~~~ 217 (296)
T PRK11189 145 GGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KLDKEQWG-WNIVEFY--LGKISEETL 217 (296)
T ss_pred CCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hCCccccH-HHHHHHH--ccCCCHHHH
Confidence 9999999999999998 567665322222334567889999999976543 23343322 2344333 455433 3
Q ss_pred HHHHHh-CCC----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC-CCcchHHHHHHHHhhhcC
Q 047408 615 YRFIEM-MPV----AP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEP-DNTGYYVLLANVYAEAEK 676 (830)
Q Consensus 615 ~~~~~~-m~~----~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p-~~~~~~~~l~~~y~~~g~ 676 (830)
.+.+.+ ... .| ....|..|...+...|+.++|+..++++++++| +...+-..+..+....++
T Consensus 218 ~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 218 MERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLGQD 286 (296)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHhh
Confidence 333332 121 22 236899999999999999999999999999997 555555555555444333
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.9e-07 Score=92.28 Aligned_cols=224 Identities=11% Similarity=0.036 Sum_probs=149.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHH
Q 047408 406 SNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYIL 485 (830)
Q Consensus 406 ~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 485 (830)
-+-+..+|.+.|.+.+|.+.|+.-.+. .|-..|
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q----------------------~~~~dT------------------------- 258 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ----------------------FPHPDT------------------------- 258 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc----------------------CCchhH-------------------------
Confidence 356778888888888888888765433 233333
Q ss_pred HhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC--CC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-H
Q 047408 486 RHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP--AK-DLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-S 561 (830)
Q Consensus 486 ~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~--~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t 561 (830)
+-.|-..|-+-.+.+.|..+|.+-. .| |+....-+...+-..++.++|+++|+...+ ..|+.+ .
T Consensus 259 ----------fllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk--~~~~nvEa 326 (478)
T KOG1129|consen 259 ----------FLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLK--LHPINVEA 326 (478)
T ss_pred ----------HHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHh--cCCcccee
Confidence 3344455555555555555555443 12 333333344555556666666666666665 344444 3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHH
Q 047408 562 FISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM---PVAPD--ATIWGSLLCG 636 (830)
Q Consensus 562 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m---~~~p~--~~~~~~ll~~ 636 (830)
..++...+...+..+-|+.+++++.+- |+. +.+.|..+.-.+.-++++|-++.-|++. .-.|+ ..+|-.|...
T Consensus 327 iAcia~~yfY~~~PE~AlryYRRiLqm-G~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~v 404 (478)
T KOG1129|consen 327 IACIAVGYFYDNNPEMALRYYRRILQM-GAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFV 404 (478)
T ss_pred eeeeeeccccCCChHHHHHHHHHHHHh-cCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhcccee
Confidence 444555566666666777766666532 432 3455666665566666777666666654 12344 4688888888
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhC
Q 047408 637 CRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRR 690 (830)
Q Consensus 637 ~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 690 (830)
....||+..|.+.++-++..+|++...++.|+-+-.+.|+.++|..++...++.
T Consensus 405 aV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 405 AVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred EEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 888999999999999999999999999999999999999999999999888763
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.75 E-value=4e-05 Score=76.92 Aligned_cols=218 Identities=14% Similarity=0.086 Sum_probs=120.0
Q ss_pred chhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCcccccc
Q 047408 384 LEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMAC 463 (830)
Q Consensus 384 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ 463 (830)
-+.|.+++--+++. -|. ..-.|+--|.+.+++.+|..+.+++... .|-.+.+-.
T Consensus 270 gEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~Pt----------------------tP~EyilKg 323 (557)
T KOG3785|consen 270 GEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDPT----------------------TPYEYILKG 323 (557)
T ss_pred CccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcCCC----------------------ChHHHHHHH
Confidence 34455555444433 122 2334666789999999999998876432 132222222
Q ss_pred chhh-----hcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcC
Q 047408 464 ILPA-----CASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHG 538 (830)
Q Consensus 464 ll~a-----~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g 538 (830)
+..+ ..+...+.-|.+.+..+-.++...|+. .--.+|.+.+.-..
T Consensus 324 vv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTI------------------------------pGRQsmAs~fFL~~ 373 (557)
T KOG3785|consen 324 VVFAALGQETGSREHLKIAQQFFQLVGESALECDTI------------------------------PGRQSMASYFFLSF 373 (557)
T ss_pred HHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccc------------------------------cchHHHHHHHHHHH
Confidence 2221 122223444555555554444443322 22333444444445
Q ss_pred ChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 047408 539 FGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFI 618 (830)
Q Consensus 539 ~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~ 618 (830)
++++.+-.++....- +.-|.+--..+..|....|.+.+|.++|-.+.. -.++-+......|...|.+.|+.+-|++++
T Consensus 374 qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~-~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~ 451 (557)
T KOG3785|consen 374 QFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISG-PEIKNKILYKSMLARCYIRNKKPQLAWDMM 451 (557)
T ss_pred HHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcC-hhhhhhHHHHHHHHHHHHhcCCchHHHHHH
Confidence 555555555555543 222333333455667777777777777765541 122222222334556777888888888888
Q ss_pred HhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHhccCCC
Q 047408 619 EMMPVAPDATIWGSLLC-GCRIHHEVKLAEKVAEHVFELEPD 659 (830)
Q Consensus 619 ~~m~~~p~~~~~~~ll~-~~~~~g~~~~a~~~~~~~~~l~p~ 659 (830)
-++....+..+..-|+. -|.+.+.+=-|-+++..+-.++|.
T Consensus 452 lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 452 LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 77764445555555543 477888887788888877777776
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.6e-05 Score=85.05 Aligned_cols=557 Identities=13% Similarity=0.060 Sum_probs=302.3
Q ss_pred HHHHHHHHHHHhCCCCCccchHHHHHHHHHhCCChHHHHHHHhcCC---CCCcchHHHHHHHHHhCCChhHHHHHHHHHH
Q 047408 114 DGKKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNKID---NGKVFIWNLLMHEYSKTGNFKESLYLFKKMQ 190 (830)
Q Consensus 114 ~a~~~~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 190 (830)
.+..++..+....+.++-...+..|...|...-+...|.+.|+..- ..++.+|.....-|++..++++|..+.-..-
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 3444455555544555545678888888888778888888888654 3466788888889999999998888732222
Q ss_pred HcC-CCCCcccHHHHHHHHHhcCCCCCHHHHHHHHhhC---CCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 047408 191 SLG-IAADSYTFSCVLKCLAVVGNSRRVKDAHKLFDEL---SDRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVD 266 (830)
Q Consensus 191 ~~g-~~p~~~t~~~ll~~~~~~g~~~~~~~A~~lf~~m---~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 266 (830)
+.. ...-...|..+--.+...+ ....|..-|+.. .+.|...|..+..+|...|++..|+++|.+... +.|+
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~---n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~ 628 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAH---NLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPL 628 (1238)
T ss_pred hhchHHHHHhhhhhccccccCcc---chhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcH
Confidence 110 0000011111111111222 345555555543 356888999999999999999999999988765 3454
Q ss_pred hhhHHHHHHH--HhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcC-------CChHHHHHHHhhcCCCCeehHH
Q 047408 267 LATMVTVLSG--CANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKC-------GDLDGAIRVFEKMGERSVVSWT 337 (830)
Q Consensus 267 ~~t~~~ll~a--~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~-------g~~~~A~~~f~~m~~~d~~~~~ 337 (830)
. +|.-...+ -+..|....+....+.++..- ..-....+.|...+.++ |-...|...|+.-. ..+.
T Consensus 629 s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~-s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksi----e~f~ 702 (1238)
T KOG1127|consen 629 S-KYGRFKEAVMECDNGKYKEALDALGLIIYAF-SLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSI----ESFI 702 (1238)
T ss_pred h-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHH----HHHH
Confidence 3 33333332 234566666666666655321 11111122333333322 22233333333221 1111
Q ss_pred H-HHHHHHhcC----ChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcc---h---hhhhHHHHHHhhcCCCchhhH
Q 047408 338 S-MIAGYAREG----VFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLL---E---IGKDVHDYIKENDMQSSLYVS 406 (830)
Q Consensus 338 ~-li~~~~~~g----~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~---~---~a~~~~~~~~~~g~~~~~~~~ 406 (830)
. ++...+... -...|..+|-... .. .|+......+..-.-..+.. + .|-+.+ .....+..+...|
T Consensus 703 ~~l~h~~~~~~~~Wi~asdac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~--~~hlsl~~~~~~W 778 (1238)
T KOG1127|consen 703 VSLIHSLQSDRLQWIVASDACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECG--IAHLSLAIHMYPW 778 (1238)
T ss_pred HHHHHhhhhhHHHHHHHhHHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHh--hHHHHHhhccchH
Confidence 1 111111000 0123344444432 11 22222222222212222222 1 011111 1111122234444
Q ss_pred HHHHHHHHh----cCC----hHHHHHHHhcC---CCCCchhHHHHHH---------HHHHHHHHHhCCCCCccccccchh
Q 047408 407 NALMDMYAK----CGS----MADAESVFNQM---PVKDIVSWNTMIG---------ALDLFVAMLQNFEPDGVTMACILP 466 (830)
Q Consensus 407 ~~Li~~y~k----~g~----~~~A~~~f~~m---~~~~~~~~n~~i~---------al~~f~~m~~~~~pd~~t~~~ll~ 466 (830)
..|+.-|.+ +|. ...|...+..- ...+...||++=. |--.|-+-....+-...+|..+--
T Consensus 779 yNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVlsg~gnva~aQHCfIks~~sep~~~~~W~Nlgv 858 (1238)
T KOG1127|consen 779 YNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGV 858 (1238)
T ss_pred HHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHhhccchhhhhhhhhhhhhhccccchhheeccce
Confidence 444444433 332 23455555543 3567788887643 222232222233567778888888
Q ss_pred hhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhC-----C---CCChhhHHHHHHHHHhcC
Q 047408 467 ACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMI-----P---AKDLISWTIMIAGYGMHG 538 (830)
Q Consensus 467 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m-----~---~~d~~~~~~li~~~~~~g 538 (830)
.|....+++.|.+.+....... +.|..-|-...-.-...|+.-++..+|..- . .++..-|-.-..-..++|
T Consensus 859 L~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng 937 (1238)
T KOG1127|consen 859 LVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNG 937 (1238)
T ss_pred eEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhcc
Confidence 8899999999999999887644 334444433333345567777888887641 1 345666666666667788
Q ss_pred ChHHHHHHHHHHHH---------cCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHH----HHHH
Q 047408 539 FGCDAIATFNDMRQ---------AGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACM----VDLL 605 (830)
Q Consensus 539 ~~~~A~~l~~~m~~---------~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l----v~~l 605 (830)
+.++-+..-+..-. .|.+-+...|....+...|.+.+.++.+...+...-...+-+...|+.. ..++
T Consensus 938 ~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~ 1017 (1238)
T KOG1127|consen 938 NIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLE 1017 (1238)
T ss_pred chHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhh
Confidence 87766655544432 1334445678888888888888888877766654222223344555533 3445
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHH---HHHhhhcCHHHHHH
Q 047408 606 SRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLA---NVYAEAEKWEEVKK 682 (830)
Q Consensus 606 ~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~---~~y~~~g~~~~A~~ 682 (830)
...|.++.|..-+...+.+-|..+-.+-++. .-.|+++.+...+++++.+.-++...-+++. .....+|.-+.|..
T Consensus 1018 lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~ 1096 (1238)
T KOG1127|consen 1018 LSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQF 1096 (1238)
T ss_pred hhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHH
Confidence 5678888877777666666666655555555 4467899999999999887665554333333 33445555666665
Q ss_pred HHHHH
Q 047408 683 LREKI 687 (830)
Q Consensus 683 ~~~~m 687 (830)
..-+.
T Consensus 1097 lLfe~ 1101 (1238)
T KOG1127|consen 1097 LLFEV 1101 (1238)
T ss_pred HHHHH
Confidence 54333
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.6e-07 Score=95.54 Aligned_cols=217 Identities=12% Similarity=0.067 Sum_probs=175.5
Q ss_pred cchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHH
Q 047408 469 ASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIA 545 (830)
Q Consensus 469 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~ 545 (830)
.+.|++.+|.-.|+..++.. +.+...|--|...-+..++-..|+..+.+.. ..|....-+|...|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 46688888988899888876 5578888888888888888888888888654 4467778888889999999999999
Q ss_pred HHHHHHHcCCCCChhH---------HHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHH
Q 047408 546 TFNDMRQAGIEPDEVS---------FISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYR 616 (830)
Q Consensus 546 l~~~m~~~g~~Pd~~t---------~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~ 616 (830)
.++.-+... |-.+- +..- ....+...+....++|-.+....+..+|.+.+.+|.-+|--.|.+++|.+
T Consensus 375 ~L~~Wi~~~--p~y~~l~~a~~~~~~~~~-~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 375 MLDKWIRNK--PKYVHLVSAGENEDFENT-KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHhC--ccchhccccCccccccCC-cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999886632 11110 0000 12223334556677887777777777889999999999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 617 FIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 617 ~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
.|+.. ..+| |...||-|...+....+.++|+.+|.+++++.|.-......|+--|...|.++||.+.+-....
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99987 7788 5689999999999999999999999999999999999999999999999999999998765543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.62 E-value=5.6e-05 Score=75.89 Aligned_cols=449 Identities=15% Similarity=0.150 Sum_probs=251.8
Q ss_pred HHHHHhcCChHHHHHHHHHhhcCCCCh-h-hHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCccchHHHHHHHHHhCCC
Q 047408 70 IGRFCEVGNLEKAMEVLYSSEKSKIDT-K-TYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMFVTCGD 147 (830)
Q Consensus 70 i~~~~~~g~~~~A~~~~~~m~~~~~~~-~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li~~y~~~g~ 147 (830)
+.-+..+.++..|+.+++.-...+-.. + +-.-+..++...|++++|...+..+.... .++ ..++-.|.-.+.-.|.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~-~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAP-AELGVNLACCKFYLGQ 106 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCC-cccchhHHHHHHHHHH
Confidence 566677888999999988765443322 2 33334455568899999999998887743 334 5566556666666788
Q ss_pred hHHHHHHHhcCCCCCcchHHH-HHHHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHhh
Q 047408 148 LKEGRRVFNKIDNGKVFIWNL-LMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRRVKDAHKLFDE 226 (830)
Q Consensus 148 ~~~A~~~f~~m~~~~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~A~~lf~~ 226 (830)
+.+|..+-...++ ....+. |...--+.++-++-..+...+... .-|..+..++ .|.+. ..++|..++.+
T Consensus 107 Y~eA~~~~~ka~k--~pL~~RLlfhlahklndEk~~~~fh~~LqD~--~EdqLSLAsv--hYmR~----HYQeAIdvYkr 176 (557)
T KOG3785|consen 107 YIEAKSIAEKAPK--TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT--LEDQLSLASV--HYMRM----HYQEAIDVYKR 176 (557)
T ss_pred HHHHHHHHhhCCC--ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh--HHHHHhHHHH--HHHHH----HHHHHHHHHHH
Confidence 8899888776543 223333 334444556655555555544431 1122222211 22333 37889999888
Q ss_pred CCC--CCcchHHHHH-HHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCC--ChHHHHHHHHHHHHhCCCCC
Q 047408 227 LSD--RDVVSWNCMI-SGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCG--ALMFGRAVHAFALKACFSKE 301 (830)
Q Consensus 227 m~~--~~~~~~n~li-~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~--~~~~~~~l~~~~~~~g~~~~ 301 (830)
... |+-...|.-+ -+|.+..-++-+.+++.--++. .||. |+..-|.+|.... +-+.+.+-...+.+.+-..-
T Consensus 177 vL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~ 253 (557)
T KOG3785|consen 177 VLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEY 253 (557)
T ss_pred HHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccc
Confidence 754 5555666544 4667788888888888777664 3443 4555556664332 22222222222222221111
Q ss_pred chHHHHHH-HHhhcCCChHHHHHHHhhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHh--
Q 047408 302 ISFNNTLL-DMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHAC-- 378 (830)
Q Consensus 302 ~~~~~~Li-~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~-- 378 (830)
++. .-|+ .-+.-...-+.|++++-.+...=+..--.++--|.+.++..+|..+.+++.- ..|-++..-.+..+.
T Consensus 254 ~f~-~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalG 330 (557)
T KOG3785|consen 254 PFI-EYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALG 330 (557)
T ss_pred hhH-HHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhh
Confidence 111 1111 1111113345666665444332222333455568888999999988777532 334343333333221
Q ss_pred ---hccCcchhhhhHHHHHHhhcCCCchhhH-HHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCC
Q 047408 379 ---ACDGLLEIGKDVHDYIKENDMQSSLYVS-NALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNF 454 (830)
Q Consensus 379 ---~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~ 454 (830)
.....+..|.+.|..+-..+.+-|.... .++...+.-..++|+....++.
T Consensus 331 Qe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnS-------------------------- 384 (557)
T KOG3785|consen 331 QETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNS-------------------------- 384 (557)
T ss_pred hhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHH--------------------------
Confidence 1222355566666666666555544332 2222322222333333322222
Q ss_pred CCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCC---ChhhHHHHH
Q 047408 455 EPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAK---DLISWTIMI 531 (830)
Q Consensus 455 ~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~---d~~~~~~li 531 (830)
+...-...|.+.+| +.++++..|...+|+++|-.+..+ |-.+|-+|+
T Consensus 385 -----------------------------i~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~L 434 (557)
T KOG3785|consen 385 -----------------------------IESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSML 434 (557)
T ss_pred -----------------------------HHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHH
Confidence 22222223444444 778888889999999999887644 566776654
Q ss_pred -HHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHH-HHHHccCCHHHHHHHHHHhHhhcCCCCCcchH
Q 047408 532 -AGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVL-YACSHSGLVDEGWRFFNMMRYECNIEPKLEHY 598 (830)
Q Consensus 532 -~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll-~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y 598 (830)
.+|.++|+++-|.++|-++. -..+..+...++ .-|.+.+.+--|-+.|+.+. .+.|+++.|
T Consensus 435 ArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE---~lDP~pEnW 497 (557)
T KOG3785|consen 435 ARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELE---ILDPTPENW 497 (557)
T ss_pred HHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH---ccCCCcccc
Confidence 57888899998888766554 233445555554 66888888888888888876 567777665
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.9e-05 Score=77.98 Aligned_cols=253 Identities=15% Similarity=0.071 Sum_probs=163.9
Q ss_pred hhhHHHHHHHHHHHHH-hCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHH---HHHHHh----------
Q 047408 471 LAALERGREIHGYILR-HGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIM---IAGYGM---------- 536 (830)
Q Consensus 471 ~~~~~~a~~i~~~~~~-~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~l---i~~~~~---------- 536 (830)
.++...+.+.+..+.+ .-++.|+....++.+.|...|+.++|...|++...-|+.+..+| ...+.+
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L 288 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSAL 288 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHH
Confidence 3444555555555544 45677889999999999999999999999997664433322222 111223
Q ss_pred ------------------------cCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCC
Q 047408 537 ------------------------HGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNI 591 (830)
Q Consensus 537 ------------------------~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 591 (830)
.++++.|+.+-++-++ +.|+.+ .+..=..++...|++++|.-.|+..+ .+
T Consensus 289 ~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~--~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq---~L 363 (564)
T KOG1174|consen 289 MDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCID--SEPRNHEALILKGRLLIALERHTQAVIAFRTAQ---ML 363 (564)
T ss_pred HHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhc--cCcccchHHHhccHHHHhccchHHHHHHHHHHH---hc
Confidence 3445555555555554 455554 34444466788899999999999886 67
Q ss_pred CC-CcchHHHHHHHHHhcCCHHHHHHHH----HhCCCCCCHHHHHHHHHH--HH-hcCCHHHHHHHHHHHhccCCCCcch
Q 047408 592 EP-KLEHYACMVDLLSRTGNLSEAYRFI----EMMPVAPDATIWGSLLCG--CR-IHHEVKLAEKVAEHVFELEPDNTGY 663 (830)
Q Consensus 592 ~p-~~~~y~~lv~~l~r~g~~~eA~~~~----~~m~~~p~~~~~~~ll~~--~~-~~g~~~~a~~~~~~~~~l~p~~~~~ 663 (830)
.| +.+.|.-|+..|...|++.||.-+- +.|| .++.+. +|+++ |. ...--|+|...+++.+.++|.-.++
T Consensus 364 ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~--~sA~~L-tL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~A 440 (564)
T KOG1174|consen 364 APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQ--NSARSL-TLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPA 440 (564)
T ss_pred chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhh--cchhhh-hhhcceeeccCchhHHHHHHHHHhhhccCCccHHH
Confidence 76 6899999999999999999987554 3343 223332 23321 21 2223577888888888888888888
Q ss_pred HHHHHHHHhhhcCHHHHHHHHHHHHhCCCcCCCceeEE-----------EECCEEEEEEeCCcCCCChhHHHHHHHHHHH
Q 047408 664 YVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWI-----------EIKGKVNIFVAGGSSHPHAKKIESLLKRLRL 732 (830)
Q Consensus 664 ~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~~~swi-----------~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~ 732 (830)
-+.++.++...|+.+++..+++.-.. ..|.++.- +.+....-|...-+.+|+++...+-|++|.+
T Consensus 441 V~~~AEL~~~Eg~~~D~i~LLe~~L~----~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK 516 (564)
T KOG1174|consen 441 VNLIAELCQVEGPTKDIIKLLEKHLI----IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEK 516 (564)
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHh----hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHh
Confidence 88888888888888888887665432 22222210 0011111133444678999988888888887
Q ss_pred HHH
Q 047408 733 EMK 735 (830)
Q Consensus 733 ~~~ 735 (830)
+|+
T Consensus 517 ~~~ 519 (564)
T KOG1174|consen 517 SDD 519 (564)
T ss_pred ccC
Confidence 776
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.0027 Score=72.36 Aligned_cols=491 Identities=15% Similarity=0.204 Sum_probs=274.1
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHhhCCC--CCcchHHHHHHHHHh
Q 047408 167 NLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRRVKDAHKLFDELSD--RDVVSWNCMISGYIA 244 (830)
Q Consensus 167 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~A~~lf~~m~~--~~~~~~n~li~~~~~ 244 (830)
+..+.+|+..|+++++.-.. .+.|..||. ..+|+...+. ..+.+.++...|++ +...-.+.+...+..
T Consensus 485 ~KVi~cfAE~Gqf~KiilY~---kKvGyTPdy---mflLq~l~r~----sPD~~~qFa~~l~Q~~~~~~die~I~DlFme 554 (1666)
T KOG0985|consen 485 AKVIQCFAETGQFKKIILYA---KKVGYTPDY---MFLLQQLKRS----SPDQALQFAMMLVQDEEPLADIEQIVDLFME 554 (1666)
T ss_pred HHHHHHHHHhcchhHHHHHH---HHcCCCccH---HHHHHHHHcc----ChhHHHHHHHHhhccCCCcccHHHHHHHHHH
Confidence 34566666666666554433 356888874 4455555554 37788887777764 445567777777777
Q ss_pred CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChHHHHHH
Q 047408 245 NGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRV 324 (830)
Q Consensus 245 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 324 (830)
.+....+...+-..++ +..|+.-...+=+---...+..+.+.. ++-.+.-.. +-+..+.+.+.|.|-...|++.
T Consensus 555 ~N~iQq~TSFLLdaLK-~~~Pd~g~LQTrLLE~NL~~aPqVADA----ILgN~mFtH-yDra~IAqLCEKAGL~qraLeh 628 (1666)
T KOG0985|consen 555 LNLIQQCTSFLLDALK-LNSPDEGHLQTRLLEMNLVHAPQVADA----ILGNDMFTH-YDRAEIAQLCEKAGLLQRALEH 628 (1666)
T ss_pred HHhhhhhHHHHHHHhc-CCChhhhhHHHHHHHHHhccchHHHHH----HHhcccccc-ccHHHHHHHHHhcchHHHHHHh
Confidence 7777777776666554 345554433221111111122222222 222221111 1146677889999999999998
Q ss_pred HhhcCC--CCeehHH----HHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHh--
Q 047408 325 FEKMGE--RSVVSWT----SMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKE-- 396 (830)
Q Consensus 325 f~~m~~--~d~~~~~----~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~-- 396 (830)
+..+.. |.++.-+ -.+.+|.-.-.++++++.++.|...+++.|..+...+..-|...-..+.-.++|+....
T Consensus 629 ytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~e 708 (1666)
T KOG0985|consen 629 YTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYE 708 (1666)
T ss_pred cccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccch
Confidence 888754 2222211 12345666667899999999999999998888777776666554434444444443322
Q ss_pred ---------hcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhH------------------------------
Q 047408 397 ---------NDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSW------------------------------ 437 (830)
Q Consensus 397 ---------~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~------------------------------ 437 (830)
.++.-|+.+.--.|.+-++.|++.+..++.++-.--|.---
T Consensus 709 GL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvl 788 (1666)
T KOG0985|consen 709 GLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVL 788 (1666)
T ss_pred hHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHH
Confidence 13456667777889999999999999888766532221111
Q ss_pred ----HHHHHHHHHHHHHHhCC-CCCc------------------------cccccchhhhcchhhHHHHHHHHHHHHHhC
Q 047408 438 ----NTMIGALDLFVAMLQNF-EPDG------------------------VTMACILPACASLAALERGREIHGYILRHG 488 (830)
Q Consensus 438 ----n~~i~al~~f~~m~~~~-~pd~------------------------~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 488 (830)
|.|..-++.|.+-...+ .|-. +...-++.-+.+.+++..-...++..+..|
T Consensus 789 YLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG 868 (1666)
T KOG0985|consen 789 YLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEG 868 (1666)
T ss_pred HHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhcc
Confidence 11111222222211111 1100 001111122233334444444455555555
Q ss_pred CCCchhHHhHHHHHHHhcCCH--------------------------------------H--------------HHHHHh
Q 047408 489 ISADRNVANAIVDMYVKCGVL--------------------------------------V--------------LARSLF 516 (830)
Q Consensus 489 ~~~~~~~~~~Li~~y~k~g~~--------------------------------------~--------------~A~~~f 516 (830)
..|+.++|+|...|...++- . .|+-+.
T Consensus 869 -~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv 947 (1666)
T KOG0985|consen 869 -SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLV 947 (1666)
T ss_pred -CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHH
Confidence 34566666665555433210 0 011111
Q ss_pred hhC----------------------------C-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-------------
Q 047408 517 DMI----------------------------P-AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAG------------- 554 (830)
Q Consensus 517 ~~m----------------------------~-~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------------- 554 (830)
+++ + ..|+..-+.-+.++...+-+.+-++++++..-..
T Consensus 948 ~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLL 1027 (1666)
T KOG0985|consen 948 ERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLL 1027 (1666)
T ss_pred hccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhH
Confidence 110 0 1133333444556667777777777777775321
Q ss_pred ----CCCCh--h-HHHH---------HHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 047408 555 ----IEPDE--V-SFIS---------VLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFI 618 (830)
Q Consensus 555 ----~~Pd~--~-t~~~---------ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~ 618 (830)
++.|. + .|.. +...+...+.++||..+|+... .+......| ...-|.++.|.++-
T Consensus 1028 iLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~------~n~~A~~VL---ie~i~~ldRA~efA 1098 (1666)
T KOG0985|consen 1028 ILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFD------MNVSAIQVL---IENIGSLDRAYEFA 1098 (1666)
T ss_pred HHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhc------ccHHHHHHH---HHHhhhHHHHHHHH
Confidence 01111 0 0111 1122344556677777765431 112222222 23456777777777
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCC
Q 047408 619 EMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRG 691 (830)
Q Consensus 619 ~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g 691 (830)
++.. .+.+|..|..+-.+.|.+.+|..-+-+ .+||+.|.-.+++-.+.|+|+|-.+.+...+++.
T Consensus 1099 e~~n---~p~vWsqlakAQL~~~~v~dAieSyik-----adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~ 1163 (1666)
T KOG0985|consen 1099 ERCN---EPAVWSQLAKAQLQGGLVKDAIESYIK-----ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV 1163 (1666)
T ss_pred HhhC---ChHHHHHHHHHHHhcCchHHHHHHHHh-----cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 7653 356899999999999999988887654 4788999999999999999999999887666544
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.00021 Score=77.77 Aligned_cols=217 Identities=13% Similarity=0.187 Sum_probs=123.8
Q ss_pred CCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhCCChhHHH
Q 047408 176 TGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRRVKDAHKLFDELS---DRDVVSWNCMISGYIANGVAEKGL 252 (830)
Q Consensus 176 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~A~~lf~~m~---~~~~~~~n~li~~~~~~g~~~~A~ 252 (830)
.+++...+++.+...+ +..-...|....--.+...| +.++|......-. .++.+.|..+.-.+-...++++|+
T Consensus 20 ~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg---~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eai 95 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLG---KKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAI 95 (700)
T ss_pred HHHHHhHHHHHHHHHH-hCCccchhHHhccchhhccc---chHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHH
Confidence 4455556666655554 22222222222111122233 3566665554433 356788998888888888999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhh---cC
Q 047408 253 EVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEK---MG 329 (830)
Q Consensus 253 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~---m~ 329 (830)
+.|+..... .||.... +.-|--.-++.|+++.....-.. ..
T Consensus 96 Kcy~nAl~~--~~dN~qi----------------------------------lrDlslLQ~QmRd~~~~~~tr~~LLql~ 139 (700)
T KOG1156|consen 96 KCYRNALKI--EKDNLQI----------------------------------LRDLSLLQIQMRDYEGYLETRNQLLQLR 139 (700)
T ss_pred HHHHHHHhc--CCCcHHH----------------------------------HHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 999988764 3443221 11111111112222222221111 12
Q ss_pred CCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCcchHHHHHH------HhhccCcchhhhhHHHHHHhhcCCCc
Q 047408 330 ERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREG-IEPDVYAITSILH------ACACDGLLEIGKDVHDYIKENDMQSS 402 (830)
Q Consensus 330 ~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~------a~~~~~~~~~a~~~~~~~~~~g~~~~ 402 (830)
......|..+..++.-.|+...|..+.++..+.. -.|+...|.-... -....|.++.+.+.+...... +...
T Consensus 140 ~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dk 218 (700)
T KOG1156|consen 140 PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDK 218 (700)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHH
Confidence 2345689999999999999999999998887654 2466555543322 234456666666655443222 2222
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhcCCCCC
Q 047408 403 LYVSNALMDMYAKCGSMADAESVFNQMPVKD 433 (830)
Q Consensus 403 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~ 433 (830)
...--.-.+.+.+.|++++|..++..+..++
T Consensus 219 la~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn 249 (700)
T KOG1156|consen 219 LAFEETKADLLMKLGQLEEAVKVYRRLLERN 249 (700)
T ss_pred HHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC
Confidence 3344456778889999999999999887664
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.00013 Score=81.00 Aligned_cols=436 Identities=15% Similarity=0.114 Sum_probs=227.4
Q ss_pred HHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCC
Q 047408 188 KMQSLGIAADSYTFSCVLKCLAVVGNSRRVKDAHKLFDELSD---RDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFN 264 (830)
Q Consensus 188 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~A~~lf~~m~~---~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~ 264 (830)
+++...+.-|...|-.+--+....| +++.+-+.|++... .....|+.+-..|...|....|+.+++.-....-.
T Consensus 313 k~r~~~~qnd~ai~d~Lt~al~~~g---~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ 389 (799)
T KOG4162|consen 313 KLRLKKFQNDAAIFDHLTFALSRCG---QFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ 389 (799)
T ss_pred HHHHhhhcchHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC
Confidence 3333345556666666666666667 47777777776543 34567888888888888888888888766543323
Q ss_pred CChhhH-HHHHHHHh-cCCChHHHHHHHHHHHHhC--CC--CCchHHHHHHHHhhcCCChHHHHHHHhhcCCCCeehHHH
Q 047408 265 VDLATM-VTVLSGCA-NCGALMFGRAVHAFALKAC--FS--KEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSVVSWTS 338 (830)
Q Consensus 265 pd~~t~-~~ll~a~~-~~~~~~~~~~l~~~~~~~g--~~--~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~ 338 (830)
|+..+- -.+-+.|. +.+..++|...-..++..+ .. .....+-.+--+|...- +...+|.-
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A--------------~~a~~~se 455 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQA--------------RQANLKSE 455 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHh--------------hcCCChHH
Confidence 443333 33333343 3445555554444444311 00 01111111111111100 00001100
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcC-CCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcC
Q 047408 339 MIAGYAREGVFDGAIRLFRGMVREG-IEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCG 417 (830)
Q Consensus 339 li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g 417 (830)
+.....++++.+++..+.+ -.|+..-|.++ -++-.++++.|.+...+.++.+-..+...|.-|.-.+...+
T Consensus 456 ------R~~~h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~k 527 (799)
T KOG4162|consen 456 ------RDALHKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQK 527 (799)
T ss_pred ------HHHHHHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence 0011234555555554432 23433333333 23445566666666666666655556666666666666666
Q ss_pred ChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHH----HHHHHHHH----HHhCC
Q 047408 418 SMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALER----GREIHGYI----LRHGI 489 (830)
Q Consensus 418 ~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~----a~~i~~~~----~~~g~ 489 (830)
++.+|+.+.+...+.-...++-|-.-+ .- ...-.---..+..|.+.=++-+ +.+..+.. .+.|.
T Consensus 528 r~~~Al~vvd~al~E~~~N~~l~~~~~------~i--~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l 599 (799)
T KOG4162|consen 528 RLKEALDVVDAALEEFGDNHVLMDGKI------HI--ELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGL 599 (799)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhchhhh------hh--hhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhccc
Confidence 666666665443211000000000000 00 0000000000111110000000 00000000 00010
Q ss_pred -------CCchhHHhH---HHHHHHhcCCHHHHHHHhhhCCCCC------hhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047408 490 -------SADRNVANA---IVDMYVKCGVLVLARSLFDMIPAKD------LISWTIMIAGYGMHGFGCDAIATFNDMRQA 553 (830)
Q Consensus 490 -------~~~~~~~~~---Li~~y~k~g~~~~A~~~f~~m~~~d------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 553 (830)
.....++.. ++..=.+.-..+.....|...+.|+ ...|......+...++.++|...+.+...
T Consensus 600 ~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~- 678 (799)
T KOG4162|consen 600 HLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK- 678 (799)
T ss_pred ccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh-
Confidence 001112222 2221111111111222222233333 23566677788888999999877777765
Q ss_pred CCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHH--HHHhC-CCCC-CH
Q 047408 554 GIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYR--FIEMM-PVAP-DA 627 (830)
Q Consensus 554 g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~--~~~~m-~~~p-~~ 627 (830)
+.|-.. .|..........|..+||.+.|.... -+.|+ +....++..+|.+.|+..-|.. ++..+ .+.| +.
T Consensus 679 -~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~ 754 (799)
T KOG4162|consen 679 -IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNH 754 (799)
T ss_pred -cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCH
Confidence 455544 34444456677889999999998765 67786 6778899999999998777777 77776 6777 46
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 047408 628 TIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNT 661 (830)
Q Consensus 628 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~ 661 (830)
..|-.|.....+.|+.+.|-..|+.++++++.+|
T Consensus 755 eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 755 EAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 8999999999999999999999999999998876
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.4e-05 Score=83.18 Aligned_cols=211 Identities=15% Similarity=0.089 Sum_probs=139.9
Q ss_pred hhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChh----------hHHHHHHHH
Q 047408 465 LPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLI----------SWTIMIAGY 534 (830)
Q Consensus 465 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~----------~~~~li~~~ 534 (830)
.++..+..+++.+.+-+...+... .+..-++.....|...|...+....-+...+..-. +..-+..+|
T Consensus 231 gnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~ 308 (539)
T KOG0548|consen 231 GNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAY 308 (539)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhh
Confidence 334444455666666666666554 55556666677777777766665554443322111 122233466
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcc-hHHHHHHHHHhcCCHHH
Q 047408 535 GMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLE-HYACMVDLLSRTGNLSE 613 (830)
Q Consensus 535 ~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~y~~lv~~l~r~g~~~e 613 (830)
...++++.|+..|++.+..-..||..+ +....+++....+... -+.|... -.-.=...+.+.|++.+
T Consensus 309 ~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 309 TKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred hhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHH
Confidence 667778888888888766555554432 2222334443333321 2344321 11122667788999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 614 AYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 614 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
|...+.++ ...| |...|.....++...|++..|..-+++.++++|+....|..=+-++....+|++|.+.+++..+
T Consensus 377 Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 377 AVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999987 4456 5688888888889999999999999999999999999999999999999999999999887664
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.0002 Score=81.29 Aligned_cols=344 Identities=16% Similarity=0.079 Sum_probs=161.4
Q ss_pred hHHHHHHHHHhhcCCCCh-hhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCccchHHHHHHHHHhCCChHHHHHHHhc
Q 047408 79 LEKAMEVLYSSEKSKIDT-KTYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNK 157 (830)
Q Consensus 79 ~~~A~~~~~~m~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 157 (830)
...|+..|-+..+..+.- ..|..|-..|....+...|++.|+...+ +++.+...+..+...|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFe--LDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFE--LDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 666777776666555443 2666666666655566667777766655 3444466666777777777777776665332
Q ss_pred CCCCCc---chHHH--HHHHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHhhCCCCCc
Q 047408 158 IDNGKV---FIWNL--LMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRRVKDAHKLFDELSDRDV 232 (830)
Q Consensus 158 m~~~~~---~~~~~--li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~A~~lf~~m~~~~~ 232 (830)
..+.+. -.||- .--.|.+.++...|+.-|+...+-. +-|...|..+..+|...| +...|.++|++...-++
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sG---ry~~AlKvF~kAs~LrP 627 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESG---RYSHALKVFTKASLLRP 627 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcC---ceehHHHhhhhhHhcCc
Confidence 222211 11222 2223444555555555555444321 123344555555555555 45555555555443322
Q ss_pred chHHH---HHHHHHhCCChhHHHHHHHHHHHC------CCCCChhhHHHHHHHHhcCCC-------hHHHHHHHHHHHHh
Q 047408 233 VSWNC---MISGYIANGVAEKGLEVFKEMLNL------GFNVDLATMVTVLSGCANCGA-------LMFGRAVHAFALKA 296 (830)
Q Consensus 233 ~~~n~---li~~~~~~g~~~~A~~l~~~m~~~------g~~pd~~t~~~ll~a~~~~~~-------~~~~~~l~~~~~~~ 296 (830)
.+|-. ....-+.+|.+.+|+..+...... +..--..++......+...|- ++...+.+.-++..
T Consensus 628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 628 LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH 707 (1238)
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 22211 112233445555555554443321 000011111111111111110 11111111111111
Q ss_pred C--------------------CCCCchHHHHHHHHhhc----CCCh---H---HHHHHHhhcC--CCCeehHHHHHHHHH
Q 047408 297 C--------------------FSKEISFNNTLLDMYSK----CGDL---D---GAIRVFEKMG--ERSVVSWTSMIAGYA 344 (830)
Q Consensus 297 g--------------------~~~~~~~~~~Li~~y~k----~g~~---~---~A~~~f~~m~--~~d~~~~~~li~~~~ 344 (830)
. ..|+ .+...++..+.+ .+.. | -+.+.+-.-. .-+..+|..++..|.
T Consensus 708 ~~~~~~~~Wi~asdac~~f~q~e~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinyl 786 (1238)
T KOG1127|consen 708 SLQSDRLQWIVASDACYIFSQEEPS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYL 786 (1238)
T ss_pred hhhhhHHHHHHHhHHHHHHHHhccc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHH
Confidence 1 1233 221222222222 1111 1 0111110000 024567877776665
Q ss_pred h----cC----ChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhc-CCCchhhHHHHHHHHHh
Q 047408 345 R----EG----VFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKEND-MQSSLYVSNALMDMYAK 415 (830)
Q Consensus 345 ~----~g----~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~Li~~y~k 415 (830)
+ .| +...|+..+.+.++. ..|...+-..|...+..|++.-+ .|..+...- .+....+|..+.-.+.+
T Consensus 787 r~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVlsg~gnva~a--QHCfIks~~sep~~~~~W~NlgvL~l~ 862 (1238)
T KOG1127|consen 787 RYFLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVLSGIGNVACA--QHCFIKSRFSEPTCHCQWLNLGVLVLE 862 (1238)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHhhccchhhhh--hhhhhhhhhccccchhheeccceeEEe
Confidence 5 12 224677777777653 33444444444444444555444 444443332 24556788888888999
Q ss_pred cCChHHHHHHHhcCCCCC
Q 047408 416 CGSMADAESVFNQMPVKD 433 (830)
Q Consensus 416 ~g~~~~A~~~f~~m~~~~ 433 (830)
..+++.|...|.....-+
T Consensus 863 n~d~E~A~~af~~~qSLd 880 (1238)
T KOG1127|consen 863 NQDFEHAEPAFSSVQSLD 880 (1238)
T ss_pred cccHHHhhHHHHhhhhcC
Confidence 999999999998876543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00023 Score=79.44 Aligned_cols=415 Identities=14% Similarity=0.140 Sum_probs=220.5
Q ss_pred HHhcCCCCCHHHHHHHHhhCCC--CCcch-HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChH
Q 047408 208 LAVVGNSRRVKDAHKLFDELSD--RDVVS-WNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALM 284 (830)
Q Consensus 208 ~~~~g~~~~~~~A~~lf~~m~~--~~~~~-~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~ 284 (830)
+...| +.++|++.++.-.. .|..+ .......+.+.|+.++|..+++.+... .|+...|-..+..|.....
T Consensus 14 l~e~g---~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~-- 86 (517)
T PF12569_consen 14 LEEAG---DYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQL-- 86 (517)
T ss_pred HHHCC---CHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhc--
Confidence 34455 47777777766443 34333 344556677777777777777777764 4666666554444431100
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCCCC--eehHHHHHHHHHhcCCh-hHHHHHHHHHHH
Q 047408 285 FGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGERS--VVSWTSMIAGYAREGVF-DGAIRLFRGMVR 361 (830)
Q Consensus 285 ~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d--~~~~~~li~~~~~~g~~-~~A~~l~~~m~~ 361 (830)
+ ......+...++++++.... ..+.--+.-.+.....+ ..+...+..+..
T Consensus 87 ------------~---------------~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~ 139 (517)
T PF12569_consen 87 ------------Q---------------LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLR 139 (517)
T ss_pred ------------c---------------cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHh
Confidence 0 00112333334444332211 01111111111111112 233344455566
Q ss_pred cCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhh----c----------CCCch--hhHHHHHHHHHhcCChHHHHHH
Q 047408 362 EGIEPDVYAITSILHACACDGLLEIGKDVHDYIKEN----D----------MQSSL--YVSNALMDMYAKCGSMADAESV 425 (830)
Q Consensus 362 ~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----g----------~~~~~--~~~~~Li~~y~k~g~~~~A~~~ 425 (830)
.|+++ +|+.|-..|......+...++....... + -+|.. .++.-|...|-..|+.++|...
T Consensus 140 KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~ 216 (517)
T PF12569_consen 140 KGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEY 216 (517)
T ss_pred cCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 66543 3444444444433333333333333221 1 12333 2446667788888999998888
Q ss_pred HhcCCCCCchhHHHHHHHHHHHHHHHhCCCCC-ccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHH
Q 047408 426 FNQMPVKDIVSWNTMIGALDLFVAMLQNFEPD-GVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYV 504 (830)
Q Consensus 426 f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~ 504 (830)
+++..+.+ |+ ...|..-...+-+.|++.+|.+..+.+.+.. ..|..+-+-.+..+.
T Consensus 217 Id~aI~ht----------------------Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 217 IDKAIEHT----------------------PTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHhcC----------------------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHH
Confidence 88766553 33 2344455566778888888888888887765 357777788888899
Q ss_pred hcCCHHHHHHHhhhCCCCCh----------hhH--HHHHHHHHhcCChHHHHHHHHHHHHc--CCC-------------C
Q 047408 505 KCGVLVLARSLFDMIPAKDL----------ISW--TIMIAGYGMHGFGCDAIATFNDMRQA--GIE-------------P 557 (830)
Q Consensus 505 k~g~~~~A~~~f~~m~~~d~----------~~~--~~li~~~~~~g~~~~A~~l~~~m~~~--g~~-------------P 557 (830)
++|++++|.+++.....++. ..| ..-..+|.+.|++..|++.|....+. .+. .
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~ 353 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKM 353 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhc
Confidence 99999999999887765542 134 33456888999999998887776541 122 2
Q ss_pred ChhHHHHHHHHHHccCC-------HHHHHHHHHHhHhhcCCCCCcch-----------HHHHHHHH---HhcCCHHHHHH
Q 047408 558 DEVSFISVLYACSHSGL-------VDEGWRFFNMMRYECNIEPKLEH-----------YACMVDLL---SRTGNLSEAYR 616 (830)
Q Consensus 558 d~~t~~~ll~a~~~~g~-------~~~a~~~~~~m~~~~~~~p~~~~-----------y~~lv~~l---~r~g~~~eA~~ 616 (830)
+..+|..+|...-+... ...|.+++-.+..+-........ -.-+-.-. .+...-+++.+
T Consensus 354 t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~ 433 (517)
T PF12569_consen 354 TLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEK 433 (517)
T ss_pred cHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 22334444433222211 12334443333221111000000 00000000 01111111111
Q ss_pred HHH-----------hC----CCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHH
Q 047408 617 FIE-----------MM----PVAPDATIWG-SLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEV 680 (830)
Q Consensus 617 ~~~-----------~m----~~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A 680 (830)
.-. +. +.+.|....+ .|+ ....=+++|.+.++-+.+..|++...|.+--.+|.+.|++--|
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~GekL~---~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLa 510 (517)
T PF12569_consen 434 AAKKEPKKQQNKSKKKEKVEPKKKDDDPLGEKLL---KTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLA 510 (517)
T ss_pred HHhhhhhhhhccccccccccCCcCCCCccHHHHh---cCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHH
Confidence 110 00 1122221111 122 2334578899999999999999999999999999999999988
Q ss_pred HHHHH
Q 047408 681 KKLRE 685 (830)
Q Consensus 681 ~~~~~ 685 (830)
.+-.+
T Consensus 511 LqaL~ 515 (517)
T PF12569_consen 511 LQALK 515 (517)
T ss_pred HHHHH
Confidence 87654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00043 Score=74.59 Aligned_cols=435 Identities=14% Similarity=0.113 Sum_probs=232.9
Q ss_pred HHHHHHhcCChHHHHHHHHHhhcCCCChh-hHHHHHHHHhccCChhHHHHHHHHHHHhCC-CCCccchHHHHHHHHH--h
Q 047408 69 EIGRFCEVGNLEKAMEVLYSSEKSKIDTK-TYCSILQLCADLKSLEDGKKVHSIICESGI-VIDDGVLGSKLVFMFV--T 144 (830)
Q Consensus 69 li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~~li~~y~--~ 144 (830)
=++-+..+|++++|.....++...+|++. .+..=+-+..+.+.+++|..+. ...+. ...+.+. +=.+|| +
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~i---kk~~~~~~~~~~~---fEKAYc~Yr 91 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLI---KKNGALLVINSFF---FEKAYCEYR 91 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHH---Hhcchhhhcchhh---HHHHHHHHH
Confidence 35667788999999999999998887763 4544445566777888877443 23221 1121221 244555 5
Q ss_pred CCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CcccHHHHHHHHHhcCCCCCHHHHHHH
Q 047408 145 CGDLKEGRRVFNKIDNGKVFIWNLLMHEYSKTGNFKESLYLFKKMQSLGIAA-DSYTFSCVLKCLAVVGNSRRVKDAHKL 223 (830)
Q Consensus 145 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~~~~A~~l 223 (830)
.+..++|.+.++...+-+..+-..-...+-+.|++++|+.+|+.+.+.+..- |...-..++.+-.. ..+. +
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~-------l~~~-~ 163 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA-------LQVQ-L 163 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh-------hhHH-H
Confidence 6999999999996666665566666778889999999999999998765421 12222222222211 1121 3
Q ss_pred HhhCCCCCcchHHHH---HHHHHhCCChhHHHHHHHHHHHCC-------CCCCh--hhH-----HHHHHHHhcCCChHHH
Q 047408 224 FDELSDRDVVSWNCM---ISGYIANGVAEKGLEVFKEMLNLG-------FNVDL--ATM-----VTVLSGCANCGALMFG 286 (830)
Q Consensus 224 f~~m~~~~~~~~n~l---i~~~~~~g~~~~A~~l~~~m~~~g-------~~pd~--~t~-----~~ll~a~~~~~~~~~~ 286 (830)
.+..+.....+|..+ ...+..+|++.+|++++....+.| -.-+. ..= .-+.-.+-..|+-+++
T Consensus 164 ~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 164 LQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred HHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 555554434444443 345678999999999998883321 11100 011 1112233467889999
Q ss_pred HHHHHHHHHhCCCCCch---HHHHHHHHhhcCCChH-HHHHHHhhcCCCCeehH---------------HHHHHHHHhcC
Q 047408 287 RAVHAFALKACFSKEIS---FNNTLLDMYSKCGDLD-GAIRVFEKMGERSVVSW---------------TSMIAGYAREG 347 (830)
Q Consensus 287 ~~l~~~~~~~g~~~~~~---~~~~Li~~y~k~g~~~-~A~~~f~~m~~~d~~~~---------------~~li~~~~~~g 347 (830)
.+++..+++......++ ..|.|+.+-.-..-.+ .++..|+.........| +.++..|. +
T Consensus 244 ~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--n 321 (652)
T KOG2376|consen 244 SSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--N 321 (652)
T ss_pred HHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--h
Confidence 99999998876544322 2344554433322222 34444444332222111 12222221 2
Q ss_pred ChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccC--cchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHH
Q 047408 348 VFDGAIRLFRGMVREGIEPDVYAITSILHACACDG--LLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESV 425 (830)
Q Consensus 348 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 425 (830)
..+.+.++-.... +..|. +.+..++..+.... ....+..++....+........+.-.++..-...|+++.|.++
T Consensus 322 k~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~i 398 (652)
T KOG2376|consen 322 KMDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEI 398 (652)
T ss_pred hHHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 2223333222211 22232 33444554443221 2334444444443332222345556667777778888888877
Q ss_pred HhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHh
Q 047408 426 FNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVK 505 (830)
Q Consensus 426 f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k 505 (830)
+.... .+|-+ .+.+. ...+.+..+++.+|.+
T Consensus 399 l~~~~----~~~~s-------------------------------------------s~~~~--~~~P~~V~aiv~l~~~ 429 (652)
T KOG2376|consen 399 LSLFL----ESWKS-------------------------------------------SILEA--KHLPGTVGAIVALYYK 429 (652)
T ss_pred HHHHh----hhhhh-------------------------------------------hhhhh--ccChhHHHHHHHHHHh
Confidence 65432 11111 11122 2334566778888888
Q ss_pred cCCHHHHHHHhhhCC------CCCh----hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcc
Q 047408 506 CGVLVLARSLFDMIP------AKDL----ISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHS 572 (830)
Q Consensus 506 ~g~~~~A~~~f~~m~------~~d~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~ 572 (830)
.++-+.|..++++.. .... .+|.-...--.++|+.++|..+++++.+. -.+|..+...++.++++.
T Consensus 430 ~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~-n~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 430 IKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF-NPNDTDLLVQLVTAYARL 505 (652)
T ss_pred ccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh-CCchHHHHHHHHHHHHhc
Confidence 888877777776432 1111 12222223333556666666666666553 133444455555554443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.0011 Score=82.13 Aligned_cols=436 Identities=10% Similarity=0.019 Sum_probs=249.7
Q ss_pred HHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCC--C-C----hhhHHHHHHHHhcC----CChHHH
Q 047408 218 KDAHKLFDELSDRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFN--V-D----LATMVTVLSGCANC----GALMFG 286 (830)
Q Consensus 218 ~~A~~lf~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~--p-d----~~t~~~ll~a~~~~----~~~~~~ 286 (830)
++..+++..+.--+.++ -.+...... .+.+.++++++...|+- | + .+.|..++..+... .+....
T Consensus 265 ~~~~~~l~~~a~~~~~~-~~l~~~l~~---~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~~~~~ 340 (903)
T PRK04841 265 LETRHFLLRCSVLRSMN-DALIVRVTG---EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWELAQEL 340 (903)
T ss_pred HHHHHHHHHhcccccCC-HHHHHHHcC---CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhcCchHH
Confidence 34444444443333333 233333333 33456777777777651 1 1 24455555544321 122233
Q ss_pred HHHHHHHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCCCCeeh--HHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 047408 287 RAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSVVS--WTSMIAGYAREGVFDGAIRLFRGMVREGI 364 (830)
Q Consensus 287 ~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 364 (830)
..+|.. ....|...|++.+|..........+... ...........|+.+.+...+..+.....
T Consensus 341 ~~lh~r---------------aa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~ 405 (903)
T PRK04841 341 PELHRA---------------AAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVL 405 (903)
T ss_pred HHHHHH---------------HHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHH
Confidence 334332 3344566677777776666655432211 11112234456777777777666532211
Q ss_pred CCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcC------CCc--hhhHHHHHHHHHhcCChHHHHHHHhcCCCCCc--
Q 047408 365 EPDVYAITSILHACACDGLLEIGKDVHDYIKENDM------QSS--LYVSNALMDMYAKCGSMADAESVFNQMPVKDI-- 434 (830)
Q Consensus 365 ~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~------~~~--~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~-- 434 (830)
..+..........+...++++++...+....+.-- .+. ......+...+...|++++|...+++......
T Consensus 406 ~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~ 485 (903)
T PRK04841 406 LENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLT 485 (903)
T ss_pred hcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc
Confidence 12222223333345567888888888877654311 111 12223344556788999999988876432100
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHh----CCC-CchhHHhHHHHHHHhcCCH
Q 047408 435 VSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRH----GIS-ADRNVANAIVDMYVKCGVL 509 (830)
Q Consensus 435 ~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g~~-~~~~~~~~Li~~y~k~g~~ 509 (830)
..+. -......+...+...|+++.|...+...... |-. ........+...+...|++
T Consensus 486 ~~~~------------------~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~ 547 (903)
T PRK04841 486 WYYS------------------RIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFL 547 (903)
T ss_pred cHHH------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCH
Confidence 0000 0012233344456788999998888877643 211 1123455667788899999
Q ss_pred HHHHHHhhhCCC-------CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCh--hHHHHHHHHHHccCC
Q 047408 510 VLARSLFDMIPA-------KD----LISWTIMIAGYGMHGFGCDAIATFNDMRQA--GIEPDE--VSFISVLYACSHSGL 574 (830)
Q Consensus 510 ~~A~~~f~~m~~-------~d----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~Pd~--~t~~~ll~a~~~~g~ 574 (830)
++|...+++... ++ ...+..+...+...|++++|...+++.... ...|.. ..+..+.......|+
T Consensus 548 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~ 627 (903)
T PRK04841 548 QAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGD 627 (903)
T ss_pred HHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCC
Confidence 999998876431 11 223445556677789999999999987652 122222 234445566778899
Q ss_pred HHHHHHHHHHhHhhcCCCCCcchH-----HHHHHHHHhcCCHHHHHHHHHhCCCC--CCH----HHHHHHHHHHHhcCCH
Q 047408 575 VDEGWRFFNMMRYECNIEPKLEHY-----ACMVDLLSRTGNLSEAYRFIEMMPVA--PDA----TIWGSLLCGCRIHHEV 643 (830)
Q Consensus 575 ~~~a~~~~~~m~~~~~~~p~~~~y-----~~lv~~l~r~g~~~eA~~~~~~m~~~--p~~----~~~~~ll~~~~~~g~~ 643 (830)
.++|.+.++....-.........+ ......+...|+.++|.+.+...... ... ..+..+..++...|+.
T Consensus 628 ~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~ 707 (903)
T PRK04841 628 LDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQF 707 (903)
T ss_pred HHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCH
Confidence 999999988875321111111111 11224456689999999998776211 111 1244566678888999
Q ss_pred HHHHHHHHHHhccC------CCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhC
Q 047408 644 KLAEKVAEHVFELE------PDNTGYYVLLANVYAEAEKWEEVKKLREKISRR 690 (830)
Q Consensus 644 ~~a~~~~~~~~~l~------p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 690 (830)
++|...++++++.. ++....+..++..|.+.|+.++|.+.+.+..+.
T Consensus 708 ~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 708 DEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999887642 222346788899999999999999998887653
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00014 Score=72.85 Aligned_cols=92 Identities=11% Similarity=0.075 Sum_probs=67.9
Q ss_pred hhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhh---CCCCChhhHHHHHHHHHhcCChHHH
Q 047408 467 ACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDM---IPAKDLISWTIMIAGYGMHGFGCDA 543 (830)
Q Consensus 467 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~---m~~~d~~~~~~li~~~~~~g~~~~A 543 (830)
.....|+...+......+++.. +.|...+..-..+|...|++..|..-+.. +...+....--+-..+..-|+.+.+
T Consensus 164 s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~s 242 (504)
T KOG0624|consen 164 SASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENS 242 (504)
T ss_pred HHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHH
Confidence 3445577777777777777754 56888888888888888888888766654 3455666666677777888888888
Q ss_pred HHHHHHHHHcCCCCChhH
Q 047408 544 IATFNDMRQAGIEPDEVS 561 (830)
Q Consensus 544 ~~l~~~m~~~g~~Pd~~t 561 (830)
+...++-++ +.||...
T Consensus 243 L~~iRECLK--ldpdHK~ 258 (504)
T KOG0624|consen 243 LKEIRECLK--LDPDHKL 258 (504)
T ss_pred HHHHHHHHc--cCcchhh
Confidence 888888777 6788763
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.8e-05 Score=84.07 Aligned_cols=172 Identities=17% Similarity=0.193 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC------------------CCChhhH--HHHHHHHH
Q 047408 476 RGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP------------------AKDLISW--TIMIAGYG 535 (830)
Q Consensus 476 ~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~------------------~~d~~~~--~~li~~~~ 535 (830)
.+.......++.|+| .+++.|-..|....+.+-..+++.... .|....| .-+...|-
T Consensus 129 ~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd 205 (517)
T PF12569_consen 129 RLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD 205 (517)
T ss_pred HHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH
Confidence 444555556666754 355666666665555555555544321 1233345 44567788
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHH
Q 047408 536 MHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSE 613 (830)
Q Consensus 536 ~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~e 613 (830)
..|++++|++..++.++ ..|+.+ .|..-...+-|.|++++|.+.++..+ .+.+. -..-+-.+..+.|+|+.++
T Consensus 206 ~~g~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar---~LD~~DRyiNsK~aKy~LRa~~~e~ 280 (517)
T PF12569_consen 206 YLGDYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGDLKEAAEAMDEAR---ELDLADRYINSKCAKYLLRAGRIEE 280 (517)
T ss_pred HhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hCChhhHHHHHHHHHHHHHCCCHHH
Confidence 99999999999999998 678877 56666788999999999999999886 45553 3444556777889999999
Q ss_pred HHHHHHhCCC---CCCH------HHHH--HHHHHHHhcCCHHHHHHHHHHHhc
Q 047408 614 AYRFIEMMPV---APDA------TIWG--SLLCGCRIHHEVKLAEKVAEHVFE 655 (830)
Q Consensus 614 A~~~~~~m~~---~p~~------~~~~--~ll~~~~~~g~~~~a~~~~~~~~~ 655 (830)
|.+.+....- .|-. .+|- ....+|.+.|++..|..-+..+.+
T Consensus 281 A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 281 AEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9998877632 2211 2453 345668899999999987766543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00095 Score=72.84 Aligned_cols=458 Identities=13% Similarity=0.101 Sum_probs=241.5
Q ss_pred hHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCccchHHHHHHHHHhCCChHHHHHHHhcCCC---CCcchHHHHHHHHH
Q 047408 98 TYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNKIDN---GKVFIWNLLMHEYS 174 (830)
Q Consensus 98 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~ 174 (830)
.|-.+++.| ..+.+..+..+.+.+++.-.+. ..+.....-.+...|+.++|......-.+ ++.+.|..+.-.+-
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL~k~~eH--geslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQILKKFPEH--GESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHHhCCcc--chhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh
Confidence 344455544 4566677777777776643222 22222222224456788888776665443 35577988887888
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCcc-cHHHHHHHHHhcCCCCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHH
Q 047408 175 KTGNFKESLYLFKKMQSLGIAADSY-TFSCVLKCLAVVGNSRRVKDAHKLFDELSDRDVVSWNCMISGYIANGVAEKGLE 253 (830)
Q Consensus 175 ~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~~~~A~~lf~~m~~~~~~~~n~li~~~~~~g~~~~A~~ 253 (830)
...++++|++.|+..... .||.. .+.-+--.-+..++....-+.+..+-+........|..+.-++.-.|++..|..
T Consensus 87 ~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999988764 34443 333222222344444445555555555556677899999999999999999999
Q ss_pred HHHHHHHCC-CCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCCC-
Q 047408 254 VFKEMLNLG-FNVDLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGER- 331 (830)
Q Consensus 254 l~~~m~~~g-~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~- 331 (830)
++++..+.. -.|+...|.-...-.. -.....+.|..++|.+.+......
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly-----------------------------~n~i~~E~g~~q~ale~L~~~e~~i 215 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLY-----------------------------QNQILIEAGSLQKALEHLLDNEKQI 215 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHH-----------------------------HHHHHHHcccHHHHHHHHHhhhhHH
Confidence 999987764 2355554422221110 112234556666666666554321
Q ss_pred -Cee-hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhh-ccCc-chhhhhHHHHHHhhcCCCchhhHH
Q 047408 332 -SVV-SWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACA-CDGL-LEIGKDVHDYIKENDMQSSLYVSN 407 (830)
Q Consensus 332 -d~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~-~~~~-~~~a~~~~~~~~~~g~~~~~~~~~ 407 (830)
|-+ .-.+...-+.+.++.++|..+++.++.. .||..-|.-.+..|. ...+ .+....+++..-+.- +
T Consensus 216 ~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y-~------- 285 (700)
T KOG1156|consen 216 VDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY-P------- 285 (700)
T ss_pred HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC-c-------
Confidence 211 2234455666777788888888777764 566666655444332 1111 111112222111110 0
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHh
Q 047408 408 ALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRH 487 (830)
Q Consensus 408 ~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 487 (830)
++.. |-... ++......-.+....+....++.
T Consensus 286 -------r~e~-------------------------------------p~Rlp----lsvl~~eel~~~vdkyL~~~l~K 317 (700)
T KOG1156|consen 286 -------RHEC-------------------------------------PRRLP----LSVLNGEELKEIVDKYLRPLLSK 317 (700)
T ss_pred -------cccc-------------------------------------chhcc----HHHhCcchhHHHHHHHHHHHhhc
Confidence 0000 00000 00000000011111122222222
Q ss_pred CCCCc-------------hhHHhHHHHHHHhcCCHHHHHHHhh--hCCCCChhhHHH--HHHHHHhcCChHHHHHHHHHH
Q 047408 488 GISAD-------------RNVANAIVDMYVKCGVLVLARSLFD--MIPAKDLISWTI--MIAGYGMHGFGCDAIATFNDM 550 (830)
Q Consensus 488 g~~~~-------------~~~~~~Li~~y~k~g~~~~A~~~f~--~m~~~d~~~~~~--li~~~~~~g~~~~A~~l~~~m 550 (830)
|+++- +.+.--|+.+|...=.-+.+....+ +...|....|+. ++..|-..|+++.|+...+..
T Consensus 318 g~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~A 397 (700)
T KOG1156|consen 318 GVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLA 397 (700)
T ss_pred CCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 22110 0011112222221110000000000 012345556654 566777889999999999888
Q ss_pred HHcCCCCChhH-HHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CH-
Q 047408 551 RQAGIEPDEVS-FISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMPVAP-DA- 627 (830)
Q Consensus 551 ~~~g~~Pd~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p-~~- 627 (830)
.. ..|+.+- |..=..-+.|.|++++|..+++...+ =-.||...-+--+.-..|+.+.++|.++.....-+- ++
T Consensus 398 Id--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e--lD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~ 473 (700)
T KOG1156|consen 398 ID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE--LDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAV 473 (700)
T ss_pred hc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchh
Confidence 76 5777663 44444678899999999999988762 112344333345566678999999988876652111 21
Q ss_pred -------HHHHHHHH--HHHhcCCHHHHHHHHH
Q 047408 628 -------TIWGSLLC--GCRIHHEVKLAEKVAE 651 (830)
Q Consensus 628 -------~~~~~ll~--~~~~~g~~~~a~~~~~ 651 (830)
..|--+-. +|.+.|++.+|.+=+.
T Consensus 474 ~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh 506 (700)
T KOG1156|consen 474 NNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFH 506 (700)
T ss_pred hhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHh
Confidence 34554433 4677777777765443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1e-05 Score=80.30 Aligned_cols=156 Identities=13% Similarity=-0.000 Sum_probs=95.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhc
Q 047408 337 TSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKC 416 (830)
Q Consensus 337 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~ 416 (830)
+.|...|.+.|.+.+|...|+.-+.. .|-..||..+-++|.+..+.+.|..++...++. ++.|+....-....+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 45667777777777777777766654 444556666666666666666666666665544 233444444555666667
Q ss_pred CChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHH
Q 047408 417 GSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVA 496 (830)
Q Consensus 417 g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~ 496 (830)
++.++|.++++...+.+ ..+.....++...+.-.++.|.|...+.++++.|. .++..+
T Consensus 304 ~~~~~a~~lYk~vlk~~---------------------~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf 361 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH---------------------PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELF 361 (478)
T ss_pred HhHHHHHHHHHHHHhcC---------------------CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHH
Confidence 77777777777665543 24555666677777777777778777777777774 344444
Q ss_pred hHHHHHHHhcCCHHHHHHHhh
Q 047408 497 NAIVDMYVKCGVLVLARSLFD 517 (830)
Q Consensus 497 ~~Li~~y~k~g~~~~A~~~f~ 517 (830)
+.+.-.+.-.+++|-+..-|+
T Consensus 362 ~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 362 CNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred hhHHHHHHhhcchhhhHHHHH
Confidence 444443333444444444443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.9e-06 Score=85.08 Aligned_cols=163 Identities=13% Similarity=0.093 Sum_probs=115.7
Q ss_pred chhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH-
Q 047408 492 DRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACS- 570 (830)
Q Consensus 492 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~- 570 (830)
+..+......+|...|++++|.+++... .+.......+..|...++++.|.+.++.|.+ ...|.+ ...+..|+.
T Consensus 101 ~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~~-l~qLa~awv~ 175 (290)
T PF04733_consen 101 NEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDSI-LTQLAEAWVN 175 (290)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCHH-HHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcHH-HHHHHHHHHH
Confidence 3344444456788899999999998876 5566667788899999999999999999987 445544 444444432
Q ss_pred ---ccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH-H
Q 047408 571 ---HSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEV-K 644 (830)
Q Consensus 571 ---~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~-~ 644 (830)
-.+.+++|..+|+++..++ .+++...+.+.-+....|+++||++++++. ...| |+.++-.++..+...|+. +
T Consensus 176 l~~g~e~~~~A~y~f~El~~~~--~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~ 253 (290)
T PF04733_consen 176 LATGGEKYQDAFYIFEELSDKF--GSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTE 253 (290)
T ss_dssp HHHTTTCCCHHHHHHHHHHCCS----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCH
T ss_pred HHhCchhHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChh
Confidence 2236889999999987543 466777888888888899999999888775 4445 355666677777777776 6
Q ss_pred HHHHHHHHHhccCCCCc
Q 047408 645 LAEKVAEHVFELEPDNT 661 (830)
Q Consensus 645 ~a~~~~~~~~~l~p~~~ 661 (830)
.+.+...++....|+++
T Consensus 254 ~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 254 AAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHHHhCCCCh
Confidence 77788888888888864
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00011 Score=81.21 Aligned_cols=435 Identities=12% Similarity=0.072 Sum_probs=230.7
Q ss_pred cchHHHHHH--HHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHH-cCC--------CCCccc
Q 047408 132 GVLGSKLVF--MFVTCGDLKEGRRVFNKIDNGKVFIWNLLMHEYSKTGNFKESLYLFKKMQS-LGI--------AADSYT 200 (830)
Q Consensus 132 ~~~~~~li~--~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~--------~p~~~t 200 (830)
..+..++++ .|..-|++|.|.+-...+.. -..|..|.+.+.+..+++-|.-.+-.|.. +|. .|+ .+
T Consensus 726 ~~TRkaml~FSfyvtiG~MD~AfksI~~IkS--~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~ 802 (1416)
T KOG3617|consen 726 ESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS--DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-ED 802 (1416)
T ss_pred HHHHHhhhceeEEEEeccHHHHHHHHHHHhh--hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-ch
Confidence 555556655 47778999999887776653 46799999999999998888877777653 111 111 11
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcC
Q 047408 201 FSCVLKCLAVVGNSRRVKDAHKLFDELSDRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANC 280 (830)
Q Consensus 201 ~~~ll~~~~~~g~~~~~~~A~~lf~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 280 (830)
-..+--.....| .+++|..++.+-.+- ..|=..|-..|.+++|+++-+.=-+-.++ .||-.-.+-+...
T Consensus 803 eakvAvLAieLg---MlEeA~~lYr~ckR~-----DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 803 EAKVAVLAIELG---MLEEALILYRQCKRY-----DLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYAKYLEAR 871 (1416)
T ss_pred hhHHHHHHHHHh---hHHHHHHHHHHHHHH-----HHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHHHHHHhh
Confidence 111111122233 456666666554332 22334455556666666554322111111 1222222222223
Q ss_pred CChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHH
Q 047408 281 GALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFRGMV 360 (830)
Q Consensus 281 ~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 360 (830)
++.+.|.+.++.. |... +-...|+. .++..-.+..+.+.++ ..|.-....+-..|+.+.|+.+|....
T Consensus 872 ~Di~~AleyyEK~---~~ha--fev~rmL~-----e~p~~~e~Yv~~~~d~--~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 872 RDIEAALEYYEKA---GVHA--FEVFRMLK-----EYPKQIEQYVRRKRDE--SLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred ccHHHHHHHHHhc---CChH--HHHHHHHH-----hChHHHHHHHHhccch--HHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 3443333333221 1000 00000110 1122223333344334 334444555556799999999998876
Q ss_pred HcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHH
Q 047408 361 REGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTM 440 (830)
Q Consensus 361 ~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~ 440 (830)
. |-++++..+-.|+.++|-++-++ ..|....--|..+|-..|++.+|...|.+...-
T Consensus 940 D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf-------- 996 (1416)
T KOG3617|consen 940 D---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQAF-------- 996 (1416)
T ss_pred h---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH--------
Confidence 4 45667777888999999887665 346677778999999999999999999765311
Q ss_pred HHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC
Q 047408 441 IGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP 520 (830)
Q Consensus 441 i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~ 520 (830)
-.|+++- +++..+...++.. ..+...++-.+-..+ .+.|.. ..--+-.|-|.|.+.+|.++-=+-.
T Consensus 997 snAIRlc----KEnd~~d~L~nla--l~s~~~d~v~aArYy---Ee~g~~-----~~~AVmLYHkAGm~~kALelAF~tq 1062 (1416)
T KOG3617|consen 997 SNAIRLC----KENDMKDRLANLA--LMSGGSDLVSAARYY---EELGGY-----AHKAVMLYHKAGMIGKALELAFRTQ 1062 (1416)
T ss_pred HHHHHHH----HhcCHHHHHHHHH--hhcCchhHHHHHHHH---HHcchh-----hhHHHHHHHhhcchHHHHHHHHhhc
Confidence 0011111 1110001111100 001111222222222 222321 1223456888898888877632222
Q ss_pred --------------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhH
Q 047408 521 --------------AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMR 586 (830)
Q Consensus 521 --------------~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 586 (830)
..|+...+.-..-+..+.++++|..++-..++ |...+.-|...|. .--.++-+.|.
T Consensus 1063 Qf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~nv-~vtee~aE~mT 1132 (1416)
T KOG3617|consen 1063 QFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRNV-RVTEEFAELMT 1132 (1416)
T ss_pred ccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCCC-chhHHHHHhcC
Confidence 22555566666667788889999888877664 4555666665542 11222223332
Q ss_pred hhcCCCCC----cchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 047408 587 YECNIEPK----LEHYACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKL 645 (830)
Q Consensus 587 ~~~~~~p~----~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~ 645 (830)
....-.|+ ......+.+.+.+.|.+.-|-+-|.+.+.+ .. -+.++.+.||.++
T Consensus 1133 p~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK--l~----AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1133 PTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK--LS----AMRALLKSGDTQK 1189 (1416)
T ss_pred cCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH--HH----HHHHHHhcCCcce
Confidence 21112222 345667788888999998888888877533 12 2344456666553
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.3e-06 Score=78.05 Aligned_cols=122 Identities=10% Similarity=0.078 Sum_probs=94.7
Q ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 047408 545 ATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-P 622 (830)
Q Consensus 545 ~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~ 622 (830)
.+|++..+ +.|+. +.....++...|++++|...|+... .+.| +...|..+..++.+.|++++|...|++. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45556555 56664 4456667788888888888888876 4556 4677788888888899999999888887 4
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhh
Q 047408 623 VAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAE 673 (830)
Q Consensus 623 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 673 (830)
..| +...|..+..++...|+.++|+..+++++++.|+++..+...+++...
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 455 567888888888899999999999999999999998888877766543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.5e-05 Score=81.02 Aligned_cols=178 Identities=13% Similarity=0.028 Sum_probs=100.8
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHhhhCCC--C-Ch---hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh----HH
Q 047408 493 RNVANAIVDMYVKCGVLVLARSLFDMIPA--K-DL---ISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV----SF 562 (830)
Q Consensus 493 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~----t~ 562 (830)
...+..+...|.+.|++++|...|+++.. | +. ..|..+...|.+.|++++|+..|+++.+ ..|+.. ++
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~ 110 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDADYAY 110 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchHHHH
Confidence 34445555556666666666666655431 1 11 2445555566666666666666666655 233322 22
Q ss_pred HHHHHHHHcc--------CCHHHHHHHHHHhHhhcCCCCCcch-HHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 047408 563 ISVLYACSHS--------GLVDEGWRFFNMMRYECNIEPKLEH-YACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSL 633 (830)
Q Consensus 563 ~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~~~-y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~l 633 (830)
..+..++... |+.++|.+.|+.+... .|+... +..+. +.+....... .....+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~----~~~~~~~~~~-----------~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKK----RMDYLRNRLA-----------GKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHH----HHHHHHHHHH-----------HHHHHH
Confidence 2233333332 4455555555555432 232211 11111 0000000000 011234
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCC---cchHHHHHHHHhhhcCHHHHHHHHHHHHhC
Q 047408 634 LCGCRIHHEVKLAEKVAEHVFELEPDN---TGYYVLLANVYAEAEKWEEVKKLREKISRR 690 (830)
Q Consensus 634 l~~~~~~g~~~~a~~~~~~~~~l~p~~---~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 690 (830)
...+...|+.+.|...++++++..|++ +..+..++.+|...|++++|...++.+..+
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 556788899999999999999987765 468899999999999999999998887654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.43 E-value=3e-07 Score=60.76 Aligned_cols=34 Identities=26% Similarity=0.496 Sum_probs=31.3
Q ss_pred hcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCC
Q 047408 397 NDMQSSLYVSNALMDMYAKCGSMADAESVFNQMP 430 (830)
Q Consensus 397 ~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~ 430 (830)
.|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3789999999999999999999999999999984
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00029 Score=76.57 Aligned_cols=58 Identities=7% Similarity=-0.047 Sum_probs=40.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccC---------CCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 632 SLLCGCRIHHEVKLAEKVAEHVFELE---------PDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 632 ~ll~~~~~~g~~~~a~~~~~~~~~l~---------p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
....++...|+.+.|...++.+.... +.......+.+.++...|++++|.+.+.....
T Consensus 269 ~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 269 HAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555666777777777776654321 11245567888999999999999998777654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.4e-05 Score=72.80 Aligned_cols=190 Identities=9% Similarity=0.023 Sum_probs=148.6
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHcc
Q 047408 497 NAIVDMYVKCGVLVLARSLFDMIPAK---DLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHS 572 (830)
Q Consensus 497 ~~Li~~y~k~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~ 572 (830)
..|.-.|...|+...|..-+++..+. +..+|..+...|-+.|+.+.|.+.|++..+ +.|+.- ..|....-++..
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHhC
Confidence 34566788999999999999887643 446888899999999999999999999888 577665 456666667788
Q ss_pred CCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 047408 573 GLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPD-ATIWGSLLCGCRIHHEVKLAEKVA 650 (830)
Q Consensus 573 g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~ 650 (830)
|.+++|.+.|+....+-...--..+|..++-+-.++|+.+.|.+.+++. ...|+ +.....+.......|++-.|...+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHH
Confidence 8999999999988765333233677888888888999999999998886 44554 456677777788889999999999
Q ss_pred HHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 651 EHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 651 ~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
++...-.+..+...-+.+.+-.+.|+-+.|.+.-..+.
T Consensus 197 ~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 197 ERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 88887777777777788888888899888887765554
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.9e-07 Score=60.24 Aligned_cols=33 Identities=33% Similarity=0.435 Sum_probs=25.6
Q ss_pred CCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC
Q 047408 488 GISADRNVANAIVDMYVKCGVLVLARSLFDMIP 520 (830)
Q Consensus 488 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~ 520 (830)
|+.||..+||+||++|+|.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677777888888888888888887777777764
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.0054 Score=68.52 Aligned_cols=72 Identities=15% Similarity=0.172 Sum_probs=47.7
Q ss_pred hcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCCCCeehHHHHHHHHHhcCChhHHHHHHH
Q 047408 278 ANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFR 357 (830)
Q Consensus 278 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~ 357 (830)
-+.|+.+.|..++..+.. |-+++...|-.|+.++|-++-++- .|......+.+-|-..|++.+|+.+|.
T Consensus 923 ES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfT 991 (1416)
T KOG3617|consen 923 ESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFT 991 (1416)
T ss_pred hcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 345555555555544432 244566666678888877776653 455666678888888888888888887
Q ss_pred HHH
Q 047408 358 GMV 360 (830)
Q Consensus 358 ~m~ 360 (830)
+.+
T Consensus 992 rAq 994 (1416)
T KOG3617|consen 992 RAQ 994 (1416)
T ss_pred HHH
Confidence 764
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0095 Score=73.72 Aligned_cols=262 Identities=11% Similarity=-0.030 Sum_probs=151.8
Q ss_pred hccCcchhhhhHHHHHHhhcCCCc----hhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCC
Q 047408 379 ACDGLLEIGKDVHDYIKENDMQSS----LYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNF 454 (830)
Q Consensus 379 ~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~ 454 (830)
...|+++.+...+....+.--..+ ....+.+...+...|++++|...+++.... +++ .+
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~--------------~~~---~g 525 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQM--------------ARQ---HD 525 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------------Hhh---hc
Confidence 345566666666555544211111 123345556666777777777776654211 000 00
Q ss_pred CCC--ccccccchhhhcchhhHHHHHHHHHHHHH----hCCCC---chhHHhHHHHHHHhcCCHHHHHHHhhhCCC----
Q 047408 455 EPD--GVTMACILPACASLAALERGREIHGYILR----HGISA---DRNVANAIVDMYVKCGVLVLARSLFDMIPA---- 521 (830)
Q Consensus 455 ~pd--~~t~~~ll~a~~~~~~~~~a~~i~~~~~~----~g~~~---~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---- 521 (830)
.+. ..++..+...+...|+++.|.+.+..... .|... ....+..+...+...|++++|...+++...
T Consensus 526 ~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~ 605 (903)
T PRK04841 526 VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSN 605 (903)
T ss_pred chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhc
Confidence 011 11223334445566777777776665543 22211 223345566667778999999888876531
Q ss_pred --C--ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CChhHHH-----HHHHHHHccCCHHHHHHHHHHhHhhcCC
Q 047408 522 --K--DLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIE-PDEVSFI-----SVLYACSHSGLVDEGWRFFNMMRYECNI 591 (830)
Q Consensus 522 --~--d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-Pd~~t~~-----~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 591 (830)
+ ....+..+...+...|+.++|.+.+++.....-. .....+. ..+......|..+.+.+.+..... .
T Consensus 606 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~---~ 682 (903)
T PRK04841 606 YQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPK---P 682 (903)
T ss_pred cCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCC---C
Confidence 1 1234445666788899999999999888642111 1111111 112334557899999998776542 1
Q ss_pred CCCcc-----hHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 047408 592 EPKLE-----HYACMVDLLSRTGNLSEAYRFIEMM-------PVAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEP 658 (830)
Q Consensus 592 ~p~~~-----~y~~lv~~l~r~g~~~eA~~~~~~m-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p 658 (830)
.+... .+..+..++...|+.++|...+++. +..++ ..+...+..++...|+.+.|...+++++++..
T Consensus 683 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 683 EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 11111 1345677788999999999888875 22222 23555666778999999999999999998765
Q ss_pred CC
Q 047408 659 DN 660 (830)
Q Consensus 659 ~~ 660 (830)
..
T Consensus 763 ~~ 764 (903)
T PRK04841 763 RT 764 (903)
T ss_pred cc
Confidence 43
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.6e-05 Score=73.55 Aligned_cols=98 Identities=10% Similarity=-0.008 Sum_probs=87.3
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 047408 590 NIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLL 667 (830)
Q Consensus 590 ~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 667 (830)
.+.|+ ++......+...|++++|.+.|+.. ...| +...|..+..+|...|++++|...++++++++|+++..+..+
T Consensus 21 ~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~l 98 (144)
T PRK15359 21 SVDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQT 98 (144)
T ss_pred HcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 34454 3556788899999999999999987 5556 678999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCHHHHHHHHHHHHh
Q 047408 668 ANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 668 ~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
+.+|...|+.++|...++...+
T Consensus 99 g~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 99 GVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999988764
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.9e-05 Score=89.62 Aligned_cols=200 Identities=12% Similarity=0.081 Sum_probs=168.4
Q ss_pred CCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCC--------ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhH
Q 047408 490 SADRNVANAIVDMYVKCGVLVLARSLFDMIPAK--------DLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVS 561 (830)
Q Consensus 490 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~--------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t 561 (830)
|.....|-..+......++++.|++++++.... -.-.|.++++.-...|.-+...++|++..+. .--...
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 445677777888888999999999999986522 3458999999999999999999999999883 222345
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHH
Q 047408 562 FISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP---DATIWGSLLCGC 637 (830)
Q Consensus 562 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p---~~~~~~~ll~~~ 637 (830)
|..|+.-|.+.+..++|-++++.|.++++ -....|...++.+.+...-+.|.++++++ ..-| ......-....-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88999999999999999999999999887 55678999999999999999999998875 3333 344555566667
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCc
Q 047408 638 RIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLK 693 (830)
Q Consensus 638 ~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~ 693 (830)
.++|+.+.|+.+|+.++.-.|.....|..++++-.+.|.-+.+..+++..-..++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 89999999999999999999999999999999999999999999999998876653
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=3.5e-05 Score=75.40 Aligned_cols=115 Identities=10% Similarity=0.125 Sum_probs=92.2
Q ss_pred cCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--HHH
Q 047408 572 SGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGC-RIHHE--VKL 645 (830)
Q Consensus 572 ~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~-~~~g~--~~~ 645 (830)
.+..+++...++... ...| +.+.|..+...|...|++++|.+.+++. ...| +..+|..+..++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L---~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKI---RANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 455666666666654 3345 5778888888899999999999988887 5566 467777777763 66676 599
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 646 AEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 646 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
|..+++++++.+|+++..+..|+..+...|++++|...++++.+
T Consensus 129 A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 129 TREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998875
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.25 E-value=9e-05 Score=77.87 Aligned_cols=199 Identities=10% Similarity=0.074 Sum_probs=147.0
Q ss_pred chhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcC-CHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCCh--HHH
Q 047408 470 SLAALERGREIHGYILRHGISADRNVANAIVDMYVKCG-VLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFG--CDA 543 (830)
Q Consensus 470 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g-~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~--~~A 543 (830)
..+..++|......+++.. +.+..+++....++.+.| .+++|...++++. .++...|+-....+.+.|+. +++
T Consensus 49 ~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 49 SDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHH
Confidence 4456778888888887754 345567776667777777 6799999998765 45667788766566666663 788
Q ss_pred HHHHHHHHHcCCCCCh-hHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhc---CCH----HHH
Q 047408 544 IATFNDMRQAGIEPDE-VSFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRT---GNL----SEA 614 (830)
Q Consensus 544 ~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~---g~~----~eA 614 (830)
++.+++|.+ ..|+. ..+..-..++.+.|+++++++.++.+.+. .| +...|+-...++.+. |.. +++
T Consensus 128 l~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 128 LEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE---DVRNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---CCCchhHHHHHHHHHHhccccccccccHHHH
Confidence 999999987 56654 47888888888999999999999999743 34 355566555555444 323 467
Q ss_pred HHHHHh-CCCCC-CHHHHHHHHHHHHhcC----CHHHHHHHHHHHhccCCCCcchHHHHHHHHhhh
Q 047408 615 YRFIEM-MPVAP-DATIWGSLLCGCRIHH----EVKLAEKVAEHVFELEPDNTGYYVLLANVYAEA 674 (830)
Q Consensus 615 ~~~~~~-m~~~p-~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 674 (830)
+++.++ +...| |...|+.+.+.+..++ +..+|...+.++++.+|+++.+...|+++|+..
T Consensus 203 l~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 203 LKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 777744 46667 5689999999988743 456788889999999999999999999999864
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.8e-05 Score=71.97 Aligned_cols=118 Identities=11% Similarity=0.070 Sum_probs=97.3
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHh
Q 047408 595 LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYA 672 (830)
Q Consensus 595 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 672 (830)
.+..-.+...+...|++++|.++|+-. .+.| +..-|-.|...|...|++++|+.++.+++.++|+++.++..++..|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 444455667788999999999999987 5566 56789999999999999999999999999999999999999999999
Q ss_pred hhcCHHHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCcCCCChhHHHHHHHHHHHHHH
Q 047408 673 EAEKWEEVKKLREKISRRGLKKNPGCSWIEIKGKVNIFVAGGSSHPHAKKIESLLKRLRLEMK 735 (830)
Q Consensus 673 ~~g~~~~A~~~~~~m~~~g~~~~~~~swi~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~~~ 735 (830)
..|+.+.|.+-|+.... |. ..+|+..++...-+.....+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~----------~~-------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR----------IC-------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HcCCHHHHHHHHHHHHH----------Hh-------------ccChhHHHHHHHHHHHHHHhh
Confidence 99999999999987764 21 146777777776665555443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00037 Score=75.75 Aligned_cols=266 Identities=14% Similarity=0.069 Sum_probs=164.0
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCcccccc-chhhhcchhhHHHHHHHH
Q 047408 403 LYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMAC-ILPACASLAALERGREIH 481 (830)
Q Consensus 403 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~-ll~a~~~~~~~~~a~~i~ 481 (830)
...+..+...|...|+.+++.+.+......... .++...... ....+...|+.+.+..++
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~e~~~~~a~~~~~~g~~~~A~~~~ 66 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAA-------------------RATERERAHVEALSAWIAGDLPKALALL 66 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcc-------------------CCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 344555666666777777765555443222100 111111111 112335678899999999
Q ss_pred HHHHHhCCCCchhHHh---HHHHHHHhcCCHHHHHHHhhhCCCCCh---hhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 047408 482 GYILRHGISADRNVAN---AIVDMYVKCGVLVLARSLFDMIPAKDL---ISWTIMIAGYGMHGFGCDAIATFNDMRQAGI 555 (830)
Q Consensus 482 ~~~~~~g~~~~~~~~~---~Li~~y~k~g~~~~A~~~f~~m~~~d~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 555 (830)
..+.+.. +.+...++ .+.......|..+.+.+.++.....+. ..+..+...+...|++++|.+.+++..+ .
T Consensus 67 ~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~--~ 143 (355)
T cd05804 67 EQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALE--L 143 (355)
T ss_pred HHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--h
Confidence 9888764 44544444 233333345667777777765332222 3444556688899999999999999998 4
Q ss_pred CCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCc--chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC--CHHH
Q 047408 556 EPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKL--EHYACMVDLLSRTGNLSEAYRFIEMM-PVAP--DATI 629 (830)
Q Consensus 556 ~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p--~~~~ 629 (830)
.|+.. .+..+...+...|++++|..+++.........|+. ..|..+...+...|++++|.+.+++. ...| ....
T Consensus 144 ~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~ 223 (355)
T cd05804 144 NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPAL 223 (355)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHH
Confidence 56654 56677788999999999999999876432222332 23557889999999999999999986 2233 2221
Q ss_pred H--H--HHHHHHHhcCCHHHHHHH---HHHHhccCCCC--cchHHHHHHHHhhhcCHHHHHHHHHHHHhC
Q 047408 630 W--G--SLLCGCRIHHEVKLAEKV---AEHVFELEPDN--TGYYVLLANVYAEAEKWEEVKKLREKISRR 690 (830)
Q Consensus 630 ~--~--~ll~~~~~~g~~~~a~~~---~~~~~~l~p~~--~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 690 (830)
. + .++.-....|..+.+.+. ........|.. ...-...+.++...|++++|.+..+.++..
T Consensus 224 ~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 224 DLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred HHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 1 1 334444555644444443 22222111221 122246777888999999999999888753
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=5.3e-05 Score=83.40 Aligned_cols=189 Identities=17% Similarity=0.243 Sum_probs=127.9
Q ss_pred CCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 047408 488 GISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLY 567 (830)
Q Consensus 488 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~ 567 (830)
+++|--..-..+...+.++|-..+|..+|+++ ..|--.|..|...|+..+|.++..+-.+ -+||..-|..+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 45666667778899999999999999999874 5788899999999999999999888877 5888889999988
Q ss_pred HHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 047408 568 ACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKL 645 (830)
Q Consensus 568 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 645 (830)
.......+++|+++++....+. -..+.....+.++++++.+.++.. .+.| -..+|-.+..+..+.++.+.
T Consensus 466 v~~d~s~yEkawElsn~~sarA--------~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISARA--------QRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHHH--------HHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 8888888888998887654320 001111122345555665555542 3444 23455555555555556666
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCC
Q 047408 646 AEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRG 691 (830)
Q Consensus 646 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g 691 (830)
|..+|...+.++|++...++.++-.|.+.|+-.+|...+++..+.+
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 6666666666666666666666666666666666555555555444
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.2e-05 Score=81.41 Aligned_cols=213 Identities=10% Similarity=0.031 Sum_probs=139.0
Q ss_pred chhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC-CCC---hhhHHH-HHHHHHhcC
Q 047408 464 ILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP-AKD---LISWTI-MIAGYGMHG 538 (830)
Q Consensus 464 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~-~~d---~~~~~~-li~~~~~~g 538 (830)
+.+++..+|..+. +...+.+.. .|.......+...+...++-+.+..-++... .+. -.++.. ....|...|
T Consensus 41 ~~Rs~iAlg~~~~---vl~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~ 116 (290)
T PF04733_consen 41 QYRSYIALGQYDS---VLSEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEG 116 (290)
T ss_dssp HHHHHHHTT-HHH---HHHHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHcCChhH---HHHHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcC
Confidence 3444555555432 223332323 4555555444444433355566665554433 221 122222 224456779
Q ss_pred ChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcch---HHHHHHHHHhcCCHHHHH
Q 047408 539 FGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEH---YACMVDLLSRTGNLSEAY 615 (830)
Q Consensus 539 ~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~---y~~lv~~l~r~g~~~eA~ 615 (830)
++++|++++++- .+.......+..+.+.++++.|.+.++.|. .+..|... ..+.|.++.-.+.+.+|.
T Consensus 117 ~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~---~~~eD~~l~qLa~awv~l~~g~e~~~~A~ 187 (290)
T PF04733_consen 117 DYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ---QIDEDSILTQLAEAWVNLATGGEKYQDAF 187 (290)
T ss_dssp HHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH---CCSCCHHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred CHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCcHHHHHHHHHHHHHHhCchhHHHHH
Confidence 999999998653 233445556678889999999999999997 44455322 233444443445799999
Q ss_pred HHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCH-HHHHHHHHHHHh
Q 047408 616 RFIEMM--PVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKW-EEVKKLREKISR 689 (830)
Q Consensus 616 ~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~-~~A~~~~~~m~~ 689 (830)
-+|+++ ...+++.+.+.+..+....|++++|+.+++++++.+|.++.+...++-+..-.|+. +.+.+.+..++.
T Consensus 188 y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 188 YIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 999998 44578888999999999999999999999999999999999999999899999998 677888888775
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.8e-06 Score=56.98 Aligned_cols=35 Identities=31% Similarity=0.567 Sum_probs=32.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 047408 525 ISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDE 559 (830)
Q Consensus 525 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~ 559 (830)
++||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00056 Score=67.40 Aligned_cols=321 Identities=10% Similarity=0.050 Sum_probs=171.1
Q ss_pred chhHHHHHHHhcCChHHHHHHHHHhhcCCCChh-hHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCccchHH-HHHHHH
Q 047408 65 NYNAEIGRFCEVGNLEKAMEVLYSSEKSKIDTK-TYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLGS-KLVFMF 142 (830)
Q Consensus 65 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-~li~~y 142 (830)
-+++.|..+.+..++.+|++++..-.+..|... ..+.|-.+|....++..|...++++.... |. ..-|. --...+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~-~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PE-LEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hH-HHHHHHHHHHHH
Confidence 367778888889999999999988877776544 55566667778888999998888886643 22 11111 112233
Q ss_pred HhCCChHHHHHHHhcCCCC-CcchHHHHHHHH--HhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHH
Q 047408 143 VTCGDLKEGRRVFNKIDNG-KVFIWNLLMHEY--SKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRRVKD 219 (830)
Q Consensus 143 ~~~g~~~~A~~~f~~m~~~-~~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~ 219 (830)
-+.+.+.+|++|...|... +...-..-+.+- -..+++..+..+.++...
T Consensus 89 Y~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~---------------------------- 140 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS---------------------------- 140 (459)
T ss_pred HHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccC----------------------------
Confidence 4567777777777766653 211111111111 123444444444444332
Q ss_pred HHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCC
Q 047408 220 AHKLFDELSDRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKACFS 299 (830)
Q Consensus 220 A~~lf~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~ 299 (830)
+.+..+-+.......+.|++++|++-|+...+-|---....|+..+..+ +.++...+......++.+|+.
T Consensus 141 ---------en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 141 ---------ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIR 210 (459)
T ss_pred ---------CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhh
Confidence 2223333333333334455555555554444332222223333333222 233444444444444444432
Q ss_pred CCch--------------H-------HHHHH-------HHhhcCCChHHHHHHHhhcCCC-----CeehHHHHHHHHHhc
Q 047408 300 KEIS--------------F-------NNTLL-------DMYSKCGDLDGAIRVFEKMGER-----SVVSWTSMIAGYARE 346 (830)
Q Consensus 300 ~~~~--------------~-------~~~Li-------~~y~k~g~~~~A~~~f~~m~~~-----d~~~~~~li~~~~~~ 346 (830)
..+. + -++++ ..+.+.|+.+.|++.+-.||.+ |++|...+.-.- -+
T Consensus 211 ~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~ 289 (459)
T KOG4340|consen 211 QHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MD 289 (459)
T ss_pred cCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-cc
Confidence 1111 1 12222 3456778889999999888864 667665543222 23
Q ss_pred CChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcC-CCchhhHHHHHHHHHhc-CChHHHHH
Q 047408 347 GVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDM-QSSLYVSNALMDMYAKC-GSMADAES 424 (830)
Q Consensus 347 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~Li~~y~k~-g~~~~A~~ 424 (830)
+++.+..+-+.-+...+. --..||..++-.||+..-++.|-.++.+-...-+ -.+...|+ |++++.-+ -..++|.+
T Consensus 290 ~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~K 367 (459)
T KOG4340|consen 290 ARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFK 367 (459)
T ss_pred CCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHH
Confidence 455555555555555432 2346888888888888888888777765332221 12334444 44444433 34566665
Q ss_pred HHhcC
Q 047408 425 VFNQM 429 (830)
Q Consensus 425 ~f~~m 429 (830)
-++.+
T Consensus 368 KL~~L 372 (459)
T KOG4340|consen 368 KLDGL 372 (459)
T ss_pred HHHHH
Confidence 55443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00013 Score=71.42 Aligned_cols=153 Identities=11% Similarity=0.128 Sum_probs=117.1
Q ss_pred HHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHH
Q 047408 500 VDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEG 578 (830)
Q Consensus 500 i~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a 578 (830)
+-+|.+.|+++......+.+..+. ..|...++.++++..+++..+ ..|+.. .+..+...+...|++++|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 467888888887665554432221 012236777888888888887 456655 577777889999999999
Q ss_pred HHHHHHhHhhcCCCC-CcchHHHHHHHH-HhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047408 579 WRFFNMMRYECNIEP-KLEHYACMVDLL-SRTGN--LSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEH 652 (830)
Q Consensus 579 ~~~~~~m~~~~~~~p-~~~~y~~lv~~l-~r~g~--~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 652 (830)
...|+... .+.| +...+..+..++ .+.|+ .++|.+++++. ...| +..++..|...+...|++++|+..+++
T Consensus 93 ~~a~~~Al---~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 93 LLAYRQAL---QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999887 5567 477888888864 77787 59999999997 5566 567888888889999999999999999
Q ss_pred HhccCCCCcchHH
Q 047408 653 VFELEPDNTGYYV 665 (830)
Q Consensus 653 ~~~l~p~~~~~~~ 665 (830)
++++.|.+..-+.
T Consensus 170 aL~l~~~~~~r~~ 182 (198)
T PRK10370 170 VLDLNSPRVNRTQ 182 (198)
T ss_pred HHhhCCCCccHHH
Confidence 9999988765443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.14 E-value=9.2e-05 Score=75.24 Aligned_cols=181 Identities=10% Similarity=-0.001 Sum_probs=126.8
Q ss_pred CccccccchhhhcchhhHHHHHHHHHHHHHhCCCCc---hhHHhHHHHHHHhcCCHHHHHHHhhhCCC--C-Chh---hH
Q 047408 457 DGVTMACILPACASLAALERGREIHGYILRHGISAD---RNVANAIVDMYVKCGVLVLARSLFDMIPA--K-DLI---SW 527 (830)
Q Consensus 457 d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d~~---~~ 527 (830)
....+......+...|+++.|...+..+++..- .+ ...+..+...|.+.|++++|...|+++.+ | +.. .|
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYP-FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 344566666778889999999999999887542 22 24667789999999999999999998752 2 222 45
Q ss_pred HHHHHHHHhc--------CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHH
Q 047408 528 TIMIAGYGMH--------GFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYA 599 (830)
Q Consensus 528 ~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~ 599 (830)
..+..++.+. |+.++|++.|+++.. ..|+..-....+..... .. .... ....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~~~---~~------~~~~---------~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRMDY---LR------NRLA---------GKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHHHH---HH------HHHH---------HHHH
Confidence 5555666654 789999999999998 46766432211111100 00 0000 1123
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 047408 600 CMVDLLSRTGNLSEAYRFIEMM----PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEP 658 (830)
Q Consensus 600 ~lv~~l~r~g~~~eA~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p 658 (830)
.+.+.|.+.|++++|...+++. |-.| ....|..+..++...|+.++|...++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 5677889999999999988876 3334 357888999999999999999998887766555
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.2e-06 Score=56.07 Aligned_cols=35 Identities=43% Similarity=0.741 Sum_probs=33.1
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCh
Q 047408 233 VSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDL 267 (830)
Q Consensus 233 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 267 (830)
++||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 48999999999999999999999999999999984
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.9e-05 Score=84.39 Aligned_cols=223 Identities=14% Similarity=0.133 Sum_probs=128.0
Q ss_pred cCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHH
Q 047408 398 DMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERG 477 (830)
Q Consensus 398 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a 477 (830)
+++|--..-..+.+.+.++|-...|..+|+++..-+ .++-.|...|+..+|
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erlemw~-----------------------------~vi~CY~~lg~~~ka 443 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERLEMWD-----------------------------PVILCYLLLGQHGKA 443 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhHHHHH-----------------------------HHHHHHHHhcccchH
Confidence 345555566778888889999999998888764322 234455555655566
Q ss_pred HHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 047408 478 REIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEP 557 (830)
Q Consensus 478 ~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P 557 (830)
..|..+-++ -+||...|..|.|.....--+++|.++++....+--..|+-.+
T Consensus 444 eei~~q~le--k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~-------------------------- 495 (777)
T KOG1128|consen 444 EEINRQELE--KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLI-------------------------- 495 (777)
T ss_pred HHHHHHHhc--CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhcccc--------------------------
Confidence 665555554 2455666666665555555555555555543322111111111
Q ss_pred ChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 047408 558 DEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPD-ATIWGSLL 634 (830)
Q Consensus 558 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll 634 (830)
.+.++++++.+.|+.-. .+.| ...+|-...-+.-+.++++.|.+.|..- ..+|| ...||+|-
T Consensus 496 ------------~~~~~fs~~~~hle~sl---~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls 560 (777)
T KOG1128|consen 496 ------------LSNKDFSEADKHLERSL---EINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLS 560 (777)
T ss_pred ------------ccchhHHHHHHHHHHHh---hcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhh
Confidence 11344445554444322 2223 2344444444555556666665555443 45665 36677777
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCC
Q 047408 635 CGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGL 692 (830)
Q Consensus 635 ~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~ 692 (830)
.++.++|+..+|...++++++-+-++...+....-+-.+.|.|++|.+....|.+...
T Consensus 561 ~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 561 TAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRK 618 (777)
T ss_pred HHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhh
Confidence 7777777777777777777776666666655555566677777777777766655433
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00013 Score=84.37 Aligned_cols=137 Identities=11% Similarity=0.066 Sum_probs=116.8
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHH
Q 047408 523 DLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYAC 600 (830)
Q Consensus 523 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~ 600 (830)
++..+-.|.....+.|..++|+.+++...+ +.||.. ....+..++.+.+.+++|....++.. ...|+ ..+...
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l---~~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYF---SGGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh---hcCCCCHHHHHH
Confidence 567788888889999999999999999998 799988 57777889999999999999999876 55675 677888
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchH
Q 047408 601 MVDLLSRTGNLSEAYRFIEMMP-VAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYY 664 (830)
Q Consensus 601 lv~~l~r~g~~~eA~~~~~~m~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~ 664 (830)
+..++.+.|+.++|.++|++.- -.|+ ..+|.++..++...|+.++|..+++++++...+-+..|
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence 8999999999999999999972 3444 68899999999999999999999999998866544443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00017 Score=70.48 Aligned_cols=134 Identities=16% Similarity=0.124 Sum_probs=105.2
Q ss_pred CCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHH
Q 047408 555 IEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM--PVAPDATIWGS 632 (830)
Q Consensus 555 ~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m--~~~p~~~~~~~ 632 (830)
..|+......+-.++.-.|+-+.+..+....... -..+.+.....+....+.|++.+|...+++. +-+||...|+-
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 4565443355556777778877777776654322 1223445556888899999999999999887 44567899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhC
Q 047408 633 LLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRR 690 (830)
Q Consensus 633 ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 690 (830)
+..+|-+.|+.++|+..+.+++++.|+++.++..|+-.|.-.|+.++|..++......
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999988777653
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.10 E-value=5.5e-05 Score=69.29 Aligned_cols=100 Identities=19% Similarity=0.298 Sum_probs=82.7
Q ss_pred CCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHH
Q 047408 590 NIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVL 666 (830)
Q Consensus 590 ~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 666 (830)
...|+ ......++..+.+.|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++++|+++..+..
T Consensus 11 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 90 (135)
T TIGR02552 11 GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH 90 (135)
T ss_pred cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 34453 455667777888889999998888886 4445 56788888888888999999999999999999999999999
Q ss_pred HHHHHhhhcCHHHHHHHHHHHHh
Q 047408 667 LANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 667 l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
++.+|...|++++|.+.++...+
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 91 AAECLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999887664
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00022 Score=76.71 Aligned_cols=222 Identities=18% Similarity=0.190 Sum_probs=145.7
Q ss_pred hhcCCChHHHHHHHhhcCCC---CeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhh
Q 047408 312 YSKCGDLDGAIRVFEKMGER---SVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGK 388 (830)
Q Consensus 312 y~k~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~ 388 (830)
+.+.|++.+|.-.|+..... +...|--|....+.+++-..|+..+++-++ +.|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~--------------------- 351 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLE--LDPT--------------------- 351 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHh--cCCc---------------------
Confidence 45667777777777765443 345666666666666666666666666554 2333
Q ss_pred hHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCc-hhHHHHHHHHHHHHHHHhCCCCCccccccchhh
Q 047408 389 DVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDI-VSWNTMIGALDLFVAMLQNFEPDGVTMACILPA 467 (830)
Q Consensus 389 ~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~-~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a 467 (830)
+..+.-+|.-.|...|.-.+|.+.|+.-..... ..| ....+++....-. ..
T Consensus 352 -------------NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~------------l~~a~~~~~~~~~---~s 403 (579)
T KOG1125|consen 352 -------------NLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVH------------LVSAGENEDFENT---KS 403 (579)
T ss_pred -------------cHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchh------------ccccCccccccCC---cC
Confidence 344444555556666666666666554311100 000 0000001111100 22
Q ss_pred hcchhhHHHHHHHHHHH-HHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHH
Q 047408 468 CASLAALERGREIHGYI-LRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDA 543 (830)
Q Consensus 468 ~~~~~~~~~a~~i~~~~-~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A 543 (830)
..+...+....++|-.+ ...+...|+.+...|.-.|--.|++++|...|+... ..|...||-|...++...+.++|
T Consensus 404 ~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EA 483 (579)
T KOG1125|consen 404 FLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEA 483 (579)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHH
Confidence 33344455555555444 445656888899999999999999999999999765 34788999999999999999999
Q ss_pred HHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhH
Q 047408 544 IATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMR 586 (830)
Q Consensus 544 ~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 586 (830)
++-|++.++ ++|+.+ ....|.-+|...|.++||.++|-...
T Consensus 484 IsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 484 ISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 999999999 899988 45566778999999999999886543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0017 Score=68.94 Aligned_cols=174 Identities=15% Similarity=0.078 Sum_probs=115.7
Q ss_pred CHHHHHHHhhhCCC------CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHH
Q 047408 508 VLVLARSLFDMIPA------KDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWR 580 (830)
Q Consensus 508 ~~~~A~~~f~~m~~------~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~ 580 (830)
++.+++..-+.++. ++.-....++.+.........+..++- +... |-.. ......-.....|..++|+.
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~-~~~~---~~~~aa~YG~A~~~~~~~~~d~A~~ 327 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLA-KRSK---RGGLAAQYGRALQTYLAGQYDEALK 327 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHH-HHhC---ccchHHHHHHHHHHHHhcccchHHH
Confidence 55666666666663 244455555554433333333333222 2221 2111 12222334556788888888
Q ss_pred HHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 047408 581 FFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFELE 657 (830)
Q Consensus 581 ~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~ 657 (830)
.++.+.. -.|+ +......++.+.+.++.++|.+.++++ ...|+ ...|-++..++...|+.++|+..++....-+
T Consensus 328 ~l~~L~~---~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~ 404 (484)
T COG4783 328 LLQPLIA---AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND 404 (484)
T ss_pred HHHHHHH---hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Confidence 8888764 3454 445556788888999999999888887 56676 5778888888888899999999988888888
Q ss_pred CCCcchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 658 PDNTGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 658 p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
|+++..|..|+..|..+|+-.+|..-+.++-
T Consensus 405 p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 405 PEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred CCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 9999988888888888877777766665543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00066 Score=79.88 Aligned_cols=235 Identities=13% Similarity=0.148 Sum_probs=176.2
Q ss_pred HHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHh-CCC---CchhHHhHHHHHHHhcCCHHHHHHHhhhCCCC
Q 047408 447 FVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRH-GIS---ADRNVANAIVDMYVKCGVLVLARSLFDMIPAK 522 (830)
Q Consensus 447 f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g~~---~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~ 522 (830)
|.+.....+.....|...+.-..+.++++.|+++.+++++. ++. --..+|.+++++----|.-+...++|++..+-
T Consensus 1447 ferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy 1526 (1710)
T KOG1070|consen 1447 FERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY 1526 (1710)
T ss_pred HHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh
Confidence 44444443444566777777778999999999999998764 222 23568889998888888889999999988643
Q ss_pred -C-hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcch---
Q 047408 523 -D-LISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEH--- 597 (830)
Q Consensus 523 -d-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~--- 597 (830)
| ...|..|...|...+.+++|.++|++|.+. +.-....|...+..+.+...-+.|..++.+..+ .-|..+|
T Consensus 1527 cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~---~lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1527 CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALK---SLPKQEHVEF 1602 (1710)
T ss_pred cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh---hcchhhhHHH
Confidence 3 457889999999999999999999999985 554555789999999999999999999988763 4455444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC--CCCcchHH-HHHHHHh
Q 047408 598 YACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELE--PDNTGYYV-LLANVYA 672 (830)
Q Consensus 598 y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~--p~~~~~~~-~l~~~y~ 672 (830)
..-.+++-.+.|+-+.+..+|+.. .-.| -...|+.++..-.+||+.+.++.+|++++++. |.....+. .....--
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk 1682 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEK 1682 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHH
Confidence 455677788999999999999886 2233 46789999999999999999999999998764 54443332 3333333
Q ss_pred hhcCHHHHHHHHH
Q 047408 673 EAEKWEEVKKLRE 685 (830)
Q Consensus 673 ~~g~~~~A~~~~~ 685 (830)
+-|+-+.++.+-.
T Consensus 1683 ~~Gde~~vE~VKa 1695 (1710)
T KOG1070|consen 1683 SHGDEKNVEYVKA 1695 (1710)
T ss_pred hcCchhhHHHHHH
Confidence 3455555555433
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0029 Score=67.85 Aligned_cols=357 Identities=17% Similarity=0.119 Sum_probs=216.0
Q ss_pred HHhhcCCChHHHHHHHhhcC---CCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc-chHHHHHHHhhccCcch
Q 047408 310 DMYSKCGDLDGAIRVFEKMG---ERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDV-YAITSILHACACDGLLE 385 (830)
Q Consensus 310 ~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~~~ 385 (830)
+..+..|+++.|...|-+.. .+|-+.|..=..+|+..|++++|++=-.+-++ +.|+. ..|.-.-.+....|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHH
Confidence 44567899999999998753 35888999999999999999999887666655 56774 46888888888899999
Q ss_pred hhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHH-HHHhcCCCCCchhHHHHHH--------HHHHHHHHHhCC--
Q 047408 386 IGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAE-SVFNQMPVKDIVSWNTMIG--------ALDLFVAMLQNF-- 454 (830)
Q Consensus 386 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~-~~f~~m~~~~~~~~n~~i~--------al~~f~~m~~~~-- 454 (830)
+|..-+..-++.. +.+...++-|.+++ ..+.+. +.|. +..-|..+.+ .-.-|..+....
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~----~~~~~~~~~~~-----~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~ 157 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAY----LEDYAADQLFT-----KPYFHEKLANLPLTNYSLSDPAYVKILEIIQK 157 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhh----hHHHHhhhhcc-----CcHHHHHhhcChhhhhhhccHHHHHHHHHhhc
Confidence 9999998887775 56778888888888 222221 2221 2222222222 111122221111
Q ss_pred CCCc-ccccc---chhhhcchhhHHHHHHHHHHHH--HhCCCC------------c----------hhHHhHHHHHHHhc
Q 047408 455 EPDG-VTMAC---ILPACASLAALERGREIHGYIL--RHGISA------------D----------RNVANAIVDMYVKC 506 (830)
Q Consensus 455 ~pd~-~t~~~---ll~a~~~~~~~~~a~~i~~~~~--~~g~~~------------~----------~~~~~~Li~~y~k~ 506 (830)
.|.. -.|.. ++.+...+...+.....-.... ..+..| | ..-...|.++.-+.
T Consensus 158 ~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykk 237 (539)
T KOG0548|consen 158 NPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKK 237 (539)
T ss_pred CcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHh
Confidence 1111 01100 1111110000000000000000 000000 0 01123455666666
Q ss_pred CCHHHHHHHhhhCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--C----hhHHHHHHHHHHccCCHHHH
Q 047408 507 GVLVLARSLFDMIP--AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEP--D----EVSFISVLYACSHSGLVDEG 578 (830)
Q Consensus 507 g~~~~A~~~f~~m~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P--d----~~t~~~ll~a~~~~g~~~~a 578 (830)
.+++.|.+-++... ..++.-++....+|...|.+.+....-....+.|-.- | ...+..+..++.+.++++.|
T Consensus 238 k~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~a 317 (539)
T KOG0548|consen 238 KDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGA 317 (539)
T ss_pred hhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHH
Confidence 67777777776543 2344455666778888888887777777666554221 1 11223334466667888899
Q ss_pred HHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 047408 579 WRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPDA-TIWGSLLCGCRIHHEVKLAEKVAEHVFEL 656 (830)
Q Consensus 579 ~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~l 656 (830)
+.+|......+. . -+.+.+....+++++..+.. -+.|+. .--..=...+.+.|++..|...+.++++.
T Consensus 318 i~~~~kaLte~R-t---------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr 387 (539)
T KOG0548|consen 318 IKYYQKALTEHR-T---------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR 387 (539)
T ss_pred HHHHHHHhhhhc-C---------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 998887665432 2 23444555556666555554 245554 22333366789999999999999999999
Q ss_pred CCCCcchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 657 EPDNTGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 657 ~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
+|+|+..|...+-.|.+.|.+..|.+--+...
T Consensus 388 ~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~i 419 (539)
T KOG0548|consen 388 DPEDARLYSNRAACYLKLGEYPEALKDAKKCI 419 (539)
T ss_pred CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99999999999999999999999988544443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00088 Score=71.06 Aligned_cols=145 Identities=14% Similarity=0.080 Sum_probs=116.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHH-HHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHH
Q 047408 525 ISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVL-YACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMV 602 (830)
Q Consensus 525 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll-~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv 602 (830)
..|--..-.+...|+.++|+..++.+.. -.||.+.|..+. .-+...+++++|.+.++.+. ...|+ ....-.+.
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal---~l~P~~~~l~~~~a 381 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKAL---ALDPNSPLLQLNLA 381 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCccHHHHHHH
Confidence 3344444456677999999999999888 488888877766 55788999999999999987 45676 45556778
Q ss_pred HHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHH
Q 047408 603 DLLSRTGNLSEAYRFIEMM--PVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEV 680 (830)
Q Consensus 603 ~~l~r~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A 680 (830)
++|.+.|+..+|...++.. ..+-|+..|..|..+|...|+..++..+. +..|+..|+|++|
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A 444 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQA 444 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHH
Confidence 9999999999999999887 33447899999999999999998887654 4577889999999
Q ss_pred HHHHHHHHhCC
Q 047408 681 KKLREKISRRG 691 (830)
Q Consensus 681 ~~~~~~m~~~g 691 (830)
....+..+++.
T Consensus 445 ~~~l~~A~~~~ 455 (484)
T COG4783 445 IIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHhc
Confidence 99988887654
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.05 Score=58.67 Aligned_cols=160 Identities=13% Similarity=-0.000 Sum_probs=113.3
Q ss_pred cccccchhhhcchhhHHHHHHHHHHHHHhCCCC-chhHHhHHHHHHHhcCCHHHHHHHhhhCC--CCCh-hhHHHHHHHH
Q 047408 459 VTMACILPACASLAALERGREIHGYILRHGISA-DRNVANAIVDMYVKCGVLVLARSLFDMIP--AKDL-ISWTIMIAGY 534 (830)
Q Consensus 459 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~m~--~~d~-~~~~~li~~~ 534 (830)
.+|...++.--+..-++.|+.+|..+.+.+..+ +++++++++..|| .++.+.|.++|+--. -+|. .--+..+.-+
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL 445 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFL 445 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 456666777777778888999999988887776 8888899988776 467788888887533 2333 3335566666
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChh--HHHHHHHHHHccCCHHHHHHHHHHhHhhcC--CCCCcchHHHHHHHHHhcCC
Q 047408 535 GMHGFGCDAIATFNDMRQAGIEPDEV--SFISVLYACSHSGLVDEGWRFFNMMRYECN--IEPKLEHYACMVDLLSRTGN 610 (830)
Q Consensus 535 ~~~g~~~~A~~l~~~m~~~g~~Pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~~~~y~~lv~~l~r~g~ 610 (830)
...++-..|..+|++.+..++.||.. .|..+|.-=+.-|++....++-+++...+. ..|...+-..+++.|+-.+.
T Consensus 446 ~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~ 525 (656)
T KOG1914|consen 446 SHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDL 525 (656)
T ss_pred HHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccc
Confidence 77788888888888888877777764 588888877888888888887777665555 55555566666777766555
Q ss_pred HHHHHHHHH
Q 047408 611 LSEAYRFIE 619 (830)
Q Consensus 611 ~~eA~~~~~ 619 (830)
...-..-++
T Consensus 526 ~~c~~~elk 534 (656)
T KOG1914|consen 526 YPCSLDELK 534 (656)
T ss_pred ccccHHHHH
Confidence 443333333
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00056 Score=66.85 Aligned_cols=150 Identities=14% Similarity=0.119 Sum_probs=87.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhc
Q 047408 530 MIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRT 608 (830)
Q Consensus 530 li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~ 608 (830)
.-..+...|+.+.++.+..+... ..|... ..........+.|++.+|...|.+... .-.+|.+.|+.+.-.|.+.
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHc
Confidence 34455555555555555544332 122221 222345555566666666666665542 2233466666666666666
Q ss_pred CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHH
Q 047408 609 GNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKL 683 (830)
Q Consensus 609 g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~ 683 (830)
|+.++|..-|.+. .+.| ++.+.+.|...+...|+.+.|+.++.++....|.++.+-..|+-+....|+.++|+.+
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 6666666655554 3444 3456666666666777777777777777666666666666677777777777777665
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.6e-05 Score=52.80 Aligned_cols=34 Identities=18% Similarity=0.470 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 047408 524 LISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEP 557 (830)
Q Consensus 524 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P 557 (830)
+.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3578888888888888888888888888888887
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0052 Score=62.01 Aligned_cols=250 Identities=17% Similarity=0.150 Sum_probs=174.9
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHH---HHHHhcCChHHHHHHHHHHHHcCCCCChhHH-HHHHHHHHccC
Q 047408 498 AIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMI---AGYGMHGFGCDAIATFNDMRQAGIEPDEVSF-ISVLYACSHSG 573 (830)
Q Consensus 498 ~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~-~~ll~a~~~~g 573 (830)
-|...+.-.|++.+|..-|....+-|+..|-++. ..|...|+..-|+.=|.+.++ ++||-..- ..-...+.++|
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcc
Confidence 3455566678888999888888877777776654 578888999999999999988 78986532 22224567899
Q ss_pred CHHHHHHHHHHhHhhcCCCCC----cch----------HH--HHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 047408 574 LVDEGWRFFNMMRYECNIEPK----LEH----------YA--CMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLC 635 (830)
Q Consensus 574 ~~~~a~~~~~~m~~~~~~~p~----~~~----------y~--~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~ 635 (830)
.+++|..=|+...+. .|+ .++ +. ..+..+.-.|+..-|++++..+ .+.| |+..+..-..
T Consensus 121 ele~A~~DF~~vl~~---~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rak 197 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQH---EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAK 197 (504)
T ss_pred cHHHHHHHHHHHHhc---CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHH
Confidence 999999999887632 332 222 22 1223355678899999998887 5666 6677777777
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCc
Q 047408 636 GCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIEIKGKVNIFVAGGS 715 (830)
Q Consensus 636 ~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~~~swi~~~~~~~~f~~~~~ 715 (830)
+|...|+...|+.-.+.+-++..++...+.-++.+|...|+.+++....++-.+ -+|
T Consensus 198 c~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK----ldp------------------- 254 (504)
T KOG0624|consen 198 CYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK----LDP------------------- 254 (504)
T ss_pred HHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc----cCc-------------------
Confidence 788899999999999999999999999999999999999999998877655543 222
Q ss_pred CCCChhHHHHHHHHHHHHHHHcCccCCCCccccccchhhhHHHhhhhHHHHHHHHHhhcCCCC-CeEEEEecccccc
Q 047408 716 SHPHAKKIESLLKRLRLEMKREGYFPKTRYALINADEMEKEVALCGHSEKLAMAFGILNLPAG-QTIRVTKNLRVCG 791 (830)
Q Consensus 716 ~~p~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~hse~la~a~~~~~~~~~-~~~~~~knlr~c~ 791 (830)
.|...-.-|..|.++.+.+..+. +..--..-.|-|+-.-.++.+.|. ++||+----++|.
T Consensus 255 dHK~Cf~~YKklkKv~K~les~e----------------~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~ 315 (504)
T KOG0624|consen 255 DHKLCFPFYKKLKKVVKSLESAE----------------QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCT 315 (504)
T ss_pred chhhHHHHHHHHHHHHHHHHHHH----------------HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeee
Confidence 13233345666665555443211 111112235667777778888777 7888766566654
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00056 Score=79.31 Aligned_cols=143 Identities=11% Similarity=0.008 Sum_probs=116.2
Q ss_pred CCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC--CC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHH-
Q 047408 488 GISADRNVANAIVDMYVKCGVLVLARSLFDMIP--AK-DLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFI- 563 (830)
Q Consensus 488 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~--~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~- 563 (830)
.++.++..+-.|.......|..++|..+++... .| +...+-.++..+.+.+++++|+..+++... ..|+..+..
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHH
Confidence 455667888888999999999999999999875 34 566888899999999999999999999998 688888654
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 047408 564 SVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM--PVAPDATIWGSLLC 635 (830)
Q Consensus 564 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m--~~~p~~~~~~~ll~ 635 (830)
.+..++.+.|.+++|..+|+.... -.|+ ...+..+..+|-+.|+.++|...|++. ...|....|+.++.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~---~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSR---QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 445678899999999999999874 2344 678888999999999999999999987 33455555555543
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00038 Score=74.61 Aligned_cols=122 Identities=17% Similarity=0.180 Sum_probs=102.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 047408 562 FISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRI 639 (830)
Q Consensus 562 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~ 639 (830)
..+|+..+...+++++|.++|+++.++ .|+ ....|+..+...++-.+|.+++++. ...| |...+......|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 345667778889999999999998754 244 5566888888889999999999886 3344 56666666667889
Q ss_pred cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 640 HHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 640 ~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
.++++.|..+++++.++.|++-..|..|+.+|...|+|++|.-....+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999988765
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00073 Score=71.07 Aligned_cols=180 Identities=10% Similarity=0.101 Sum_probs=129.3
Q ss_pred HHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCC--
Q 047408 502 MYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHG-FGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGL-- 574 (830)
Q Consensus 502 ~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~-- 574 (830)
.+.+.++.++|..+.+.+. ..+...|+.--..+...| +.+++++.++++.+. .|+.. ++..-...+.+.|.
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcCchh
Confidence 3445567788888887765 335567777666777777 579999999999984 55554 45444444555665
Q ss_pred HHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CC----HH
Q 047408 575 VDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIH---HE----VK 644 (830)
Q Consensus 575 ~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~----~~ 644 (830)
.+++..+++.+. .+.|. ...|+-..-++.+.|++++|++.++++ ...| |..+|+.....+... |. .+
T Consensus 124 ~~~el~~~~kal---~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 124 ANKELEFTRKIL---SLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hHHHHHHHHHHH---HhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHH
Confidence 367788888877 45564 667888888888999999999999998 4445 578898877766554 22 24
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHhhh----cCHHHHHHHHHH
Q 047408 645 LAEKVAEHVFELEPDNTGYYVLLANVYAEA----EKWEEVKKLREK 686 (830)
Q Consensus 645 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~----g~~~~A~~~~~~ 686 (830)
......+++++++|+|..++.-+..+|... ++..+|.+....
T Consensus 201 ~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~ 246 (320)
T PLN02789 201 SELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLE 246 (320)
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHH
Confidence 567777899999999999999999999873 344556655443
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.88 E-value=2.1e-05 Score=52.21 Aligned_cols=34 Identities=24% Similarity=0.470 Sum_probs=32.0
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 047408 232 VVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNV 265 (830)
Q Consensus 232 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p 265 (830)
+.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 4689999999999999999999999999999988
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0011 Score=65.43 Aligned_cols=286 Identities=14% Similarity=0.113 Sum_probs=160.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-CcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHH-HHHHHH
Q 047408 336 WTSMIAGYAREGVFDGAIRLFRGMVREGIEP-DVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSN-ALMDMY 413 (830)
Q Consensus 336 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~-~Li~~y 413 (830)
+++.+..+.+..++++|++++..-.+. .| +....+.+-.+|-...++..|-..++++-..- |...-|. --...+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHHH
Confidence 455566666677777777776665543 23 33444444445556666666666666654432 2222221 112334
Q ss_pred HhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCch
Q 047408 414 AKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADR 493 (830)
Q Consensus 414 ~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~ 493 (830)
-+.+.+.+|.++...|...+. +. ++..++-..+
T Consensus 89 Y~A~i~ADALrV~~~~~D~~~-----------------------------L~---------~~~lqLqaAI--------- 121 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDNPA-----------------------------LH---------SRVLQLQAAI--------- 121 (459)
T ss_pred HHhcccHHHHHHHHHhcCCHH-----------------------------HH---------HHHHHHHHHH---------
Confidence 455666666666666544311 00 1111110000
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHhhhCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCChhHHHHHHHHHHc
Q 047408 494 NVANAIVDMYVKCGVLVLARSLFDMIP-AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQ-AGIEPDEVSFISVLYACSH 571 (830)
Q Consensus 494 ~~~~~Li~~y~k~g~~~~A~~~f~~m~-~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~Pd~~t~~~ll~a~~~ 571 (830)
.-..+++..++.+.++.+ +.+..+.+......-+.|++++|++-|+...+ .|..| .+.|+..+ +..+
T Consensus 122 ---------kYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniAL-aHy~ 190 (459)
T KOG4340|consen 122 ---------KYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLAL-AHYS 190 (459)
T ss_pred ---------hcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHH-HHHh
Confidence 112344444555555555 23344444444444556666666666666555 33333 23333322 3334
Q ss_pred cCCHHHHHHHHHHhHhhcCCC---------------------CCcchHHHHHH-------HHHhcCCHHHHHHHHHhCC-
Q 047408 572 SGLVDEGWRFFNMMRYECNIE---------------------PKLEHYACMVD-------LLSRTGNLSEAYRFIEMMP- 622 (830)
Q Consensus 572 ~g~~~~a~~~~~~m~~~~~~~---------------------p~~~~y~~lv~-------~l~r~g~~~eA~~~~~~m~- 622 (830)
.|+++.|+++..++..+ |++ |-.-|-+.++. .+.+.|+.+-|.+.+..||
T Consensus 191 ~~qyasALk~iSEIieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPP 269 (459)
T KOG4340|consen 191 SRQYASALKHISEIIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPP 269 (459)
T ss_pred hhhHHHHHHHHHHHHHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCC
Confidence 55666666665555432 221 11223444444 3568899999999999995
Q ss_pred ---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHH
Q 047408 623 ---VAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLRE 685 (830)
Q Consensus 623 ---~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~ 685 (830)
.+.|+++...+. .-...++...+.+-++-+++++|-.+.++..+.-+|++..-++-|..++-
T Consensus 270 RaE~elDPvTLHN~A-l~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 270 RAEEELDPVTLHNQA-LMNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred cccccCCchhhhHHH-HhcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 345677765542 22445677778888888899999888899999999999999999998854
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00021 Score=76.97 Aligned_cols=86 Identities=15% Similarity=0.128 Sum_probs=57.1
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHH
Q 047408 603 DLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEV 680 (830)
Q Consensus 603 ~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A 680 (830)
..+.+.|++++|++.++++ ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|...|++++|
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA 89 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTA 89 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 3445566666666666665 3444 3456666666667777777777777777777777777777777777777777777
Q ss_pred HHHHHHHH
Q 047408 681 KKLREKIS 688 (830)
Q Consensus 681 ~~~~~~m~ 688 (830)
...++...
T Consensus 90 ~~~~~~al 97 (356)
T PLN03088 90 KAALEKGA 97 (356)
T ss_pred HHHHHHHH
Confidence 77666554
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.13 Score=58.96 Aligned_cols=68 Identities=15% Similarity=0.209 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhcCCHH---HHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCcCCC
Q 047408 629 IWGSLLCGCRIHHEVK---LAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNP 696 (830)
Q Consensus 629 ~~~~ll~~~~~~g~~~---~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~ 696 (830)
+-+.|+..|++.++.. +|+-++|..+...|.|...-..|..+|.-.|-...|.++++.+.-+.+.-+.
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DT 508 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDT 508 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhcc
Confidence 4578888999888754 5667778888899999988899999999999999999999988766665543
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.75 E-value=3.3e-05 Score=50.02 Aligned_cols=31 Identities=32% Similarity=0.659 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 047408 525 ISWTIMIAGYGMHGFGCDAIATFNDMRQAGI 555 (830)
Q Consensus 525 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 555 (830)
++||+||.+|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4799999999999999999999999988774
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00072 Score=72.56 Aligned_cols=126 Identities=10% Similarity=0.120 Sum_probs=102.0
Q ss_pred HHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccC
Q 047408 495 VANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSG 573 (830)
Q Consensus 495 ~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g 573 (830)
...+|+..+...++++.|..+|+++.+.++..+..++..+...++-.+|++++++.++. .|... ....-...|...+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcC
Confidence 34456667777889999999999998877777777888888889999999999999874 45443 3443445578899
Q ss_pred CHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 047408 574 LVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMMPVAP 625 (830)
Q Consensus 574 ~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p 625 (830)
+++.|+++.+.+. .+.|+ ..+|..|+..|.+.|++++|+..++.+|+.|
T Consensus 249 ~~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 249 KYELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CHHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 9999999999887 56775 6689999999999999999999999998654
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.70 E-value=4.5e-05 Score=49.35 Aligned_cols=31 Identities=48% Similarity=0.766 Sum_probs=28.9
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 047408 233 VSWNCMISGYIANGVAEKGLEVFKEMLNLGF 263 (830)
Q Consensus 233 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~ 263 (830)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5899999999999999999999999998874
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00058 Score=62.46 Aligned_cols=113 Identities=16% Similarity=0.236 Sum_probs=86.9
Q ss_pred HHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 047408 546 TFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-P 622 (830)
Q Consensus 546 l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~ 622 (830)
+|++... ..|+.. ....+...+...|++++|.+.|+.... ..| +...+..+...|.+.|++++|.+.+++. .
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA---YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555 566554 355566777888899999998888763 234 4677788888999999999999888876 4
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcch
Q 047408 623 VAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGY 663 (830)
Q Consensus 623 ~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 663 (830)
..| +...|..+...+...|+.+.|...++++++++|++...
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 445 46778778888899999999999999999999987653
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00047 Score=57.77 Aligned_cols=92 Identities=26% Similarity=0.310 Sum_probs=76.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhc
Q 047408 598 YACMVDLLSRTGNLSEAYRFIEMM-PVAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAE 675 (830)
Q Consensus 598 y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 675 (830)
+..+...+.+.|++++|.+.+++. ...|+ ..+|..+...+...|+++.|...++++++..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455677788889999999988876 34443 4677778888888899999999999999999998888999999999999
Q ss_pred CHHHHHHHHHHHHh
Q 047408 676 KWEEVKKLREKISR 689 (830)
Q Consensus 676 ~~~~A~~~~~~m~~ 689 (830)
++++|.+.++...+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999998876654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0019 Score=75.67 Aligned_cols=196 Identities=9% Similarity=0.077 Sum_probs=139.6
Q ss_pred CCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC--CCCh---------
Q 047408 456 PDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP--AKDL--------- 524 (830)
Q Consensus 456 pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~--~~d~--------- 524 (830)
.+...+..++..+-..++++++.++.....+.. +.....|-.+...|...++.++|..+ .-.. ..+.
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-~~l~~~~~~~~~~~ve~~~ 106 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-NLIDSFSQNLKWAIVEHIC 106 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-hhhhhcccccchhHHHHHH
Confidence 344556678888889999999999998666643 33344444555578888888887776 2221 1222
Q ss_pred ----------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC
Q 047408 525 ----------ISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEP 593 (830)
Q Consensus 525 ----------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 593 (830)
..+-.+..+|.+.|+.++|...++++++. .|+.. ..+.+...++.. ++++|.+++......
T Consensus 107 ~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~----- 178 (906)
T PRK14720 107 DKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--DRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR----- 178 (906)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-----
Confidence 34556777888889999999999999994 56655 678888888888 999999998877643
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---------------------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 047408 594 KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPD---------------------ATIWGSLLCGCRIHHEVKLAEKVAE 651 (830)
Q Consensus 594 ~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~---------------------~~~~~~ll~~~~~~g~~~~a~~~~~ 651 (830)
|....++.++.+++.++ ...|+ ..+|--|-.-|+..++++.+..+++
T Consensus 179 -----------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 179 -----------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred -----------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 33344555555555554 22222 2344444467788889999999999
Q ss_pred HHhccCCCCcchHHHHHHHHh
Q 047408 652 HVFELEPDNTGYYVLLANVYA 672 (830)
Q Consensus 652 ~~~~l~p~~~~~~~~l~~~y~ 672 (830)
.+++.+|.|..+..-|+..|.
T Consensus 248 ~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 248 KILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHhcCCcchhhHHHHHHHHH
Confidence 999999999888777777776
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0014 Score=60.79 Aligned_cols=114 Identities=15% Similarity=0.066 Sum_probs=66.8
Q ss_pred cCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHH
Q 047408 572 SGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPDA----TIWGSLLCGCRIHHEVKL 645 (830)
Q Consensus 572 ~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~ 645 (830)
.++...+...++.+..+++-.| .....-.+...+...|++++|.+.|+.. ...||. ..+..|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5555666666666655433221 1222333455666677777777777665 122332 344455566677777777
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHH
Q 047408 646 AEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREK 686 (830)
Q Consensus 646 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~ 686 (830)
|...++.. .-.|-.+..+.+++++|.+.|++++|...++.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777552 22333455667788888888888888877664
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.59 E-value=7.1e-05 Score=62.00 Aligned_cols=78 Identities=26% Similarity=0.344 Sum_probs=58.2
Q ss_pred cCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHH
Q 047408 608 TGNLSEAYRFIEMM----PVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKL 683 (830)
Q Consensus 608 ~g~~~eA~~~~~~m----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~ 683 (830)
.|++++|+.+++++ |..|+...|-.+..++...|++++|..++++ .+.+|.++.....++..|.+.|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46777777777776 3223456677778888888888888888888 777787777777889999999999999888
Q ss_pred HHH
Q 047408 684 REK 686 (830)
Q Consensus 684 ~~~ 686 (830)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00078 Score=59.86 Aligned_cols=92 Identities=15% Similarity=0.091 Sum_probs=52.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---cchHHHHHH
Q 047408 598 YACMVDLLSRTGNLSEAYRFIEMM-PVAPD----ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDN---TGYYVLLAN 669 (830)
Q Consensus 598 y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~---~~~~~~l~~ 669 (830)
+-.++..+.+.|++++|.+.++++ ...|+ ...+..+...+...|+++.|...+++++...|++ +..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334455555566666666655554 12222 2344445555666666666666666666666554 334566666
Q ss_pred HHhhhcCHHHHHHHHHHHHh
Q 047408 670 VYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 670 ~y~~~g~~~~A~~~~~~m~~ 689 (830)
+|...|++++|.+.++.+.+
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHhCChHHHHHHHHHHHH
Confidence 66666666666666665554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00051 Score=68.46 Aligned_cols=95 Identities=18% Similarity=0.210 Sum_probs=67.4
Q ss_pred HHHHHccCCHHHHHHHHHHhHhhcCCCCCc-chHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 047408 566 LYACSHSGLVDEGWRFFNMMRYECNIEPKL-EHYACMVDLLSRTGNLSEAYRFIEMM-PVAPD-ATIWGSLLCGCRIHHE 642 (830)
Q Consensus 566 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~ 642 (830)
..-..+.+++++|+..|.... .+.|+- ..|..=.-+|.+.|..++|.+--+.. .+.|. ..+|..|.-++...|+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCc
Confidence 344566777888888887776 567753 44444566788888888887766554 56665 3678888888888888
Q ss_pred HHHHHHHHHHHhccCCCCcch
Q 047408 643 VKLAEKVAEHVFELEPDNTGY 663 (830)
Q Consensus 643 ~~~a~~~~~~~~~l~p~~~~~ 663 (830)
+++|++.|+++++++|++..+
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~ 185 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESY 185 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHH
Confidence 888888888888888887643
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0002 Score=56.74 Aligned_cols=64 Identities=25% Similarity=0.252 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhc-CHHHHHHHHHHHHh
Q 047408 626 DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAE-KWEEVKKLREKISR 689 (830)
Q Consensus 626 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g-~~~~A~~~~~~m~~ 689 (830)
++.+|..+...+...|++++|+..++++++++|+++..|..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999 79999998877653
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00022 Score=56.18 Aligned_cols=51 Identities=24% Similarity=0.376 Sum_probs=43.1
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 638 RIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 638 ~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
...|+++.|+..++++++.+|+++.++..|+.+|.+.|++++|.++++.+.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 356888999999999999999999999999999999999999998877554
|
... |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0048 Score=59.96 Aligned_cols=179 Identities=15% Similarity=0.093 Sum_probs=129.4
Q ss_pred cCCHHHHHHHhhhCCC--------CCh-hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHH-HHHccCCH
Q 047408 506 CGVLVLARSLFDMIPA--------KDL-ISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLY-ACSHSGLV 575 (830)
Q Consensus 506 ~g~~~~A~~~f~~m~~--------~d~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~-a~~~~g~~ 575 (830)
..+.++..+++.++.. ++. ..|..++-+....|+.+-|...++++... + |.+.-...+=. -+...|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 3467888888877641 122 23444555666778889999999998875 3 66654332221 24557899
Q ss_pred HHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047408 576 DEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM--PVAPDATIWGSLLCGCRIHHEVKLAEKVAEHV 653 (830)
Q Consensus 576 ~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 653 (830)
++|.+++++..++- +.|...|--=+-++-..|+--+|++-+.+. .+..|...|.-|-.-|...|+++.|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999988652 224566666666677778877888776665 45678899999999999999999999999999
Q ss_pred hccCCCCcchHHHHHHHHhhhcC---HHHHHHHHHHHH
Q 047408 654 FELEPDNTGYYVLLANVYAEAEK---WEEVKKLREKIS 688 (830)
Q Consensus 654 ~~l~p~~~~~~~~l~~~y~~~g~---~~~A~~~~~~m~ 688 (830)
+=+.|-++..+..+++++.-.|- .+-|.+.+....
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~al 218 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERAL 218 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999999999999999888775 344555555444
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0032 Score=70.84 Aligned_cols=138 Identities=14% Similarity=0.057 Sum_probs=70.9
Q ss_pred CCCChhhHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCChhH-HHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC
Q 047408 520 PAKDLISWTIMIAGYGMH-----GFGCDAIATFNDMRQAGIEPDEVS-FISVLYACSHSGLVDEGWRFFNMMRYECNIEP 593 (830)
Q Consensus 520 ~~~d~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~Pd~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 593 (830)
...|...|...+.|.... +...+|+++|++.++ ..||... +..+..++... ++..|
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~----------------~~~~~ 394 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVR----------------HSQQP 394 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHH----------------HhcCC
Confidence 345777888887775432 236789999999998 6888753 33222211110 01111
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhC---C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 047408 594 KLEHYACMVDLLSRTGNLSEAYRFIEMM---P-VAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLAN 669 (830)
Q Consensus 594 ~~~~y~~lv~~l~r~g~~~eA~~~~~~m---~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 669 (830)
.. .++++.+.+..++. + ...++.+|.++.-.....|++++|...++++++++| +...|..++.
T Consensus 395 ~~------------~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~ 461 (517)
T PRK10153 395 LD------------EKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGK 461 (517)
T ss_pred cc------------HHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 00 01122222222221 1 122334455554444445666666666666666666 3455666666
Q ss_pred HHhhhcCHHHHHHHHHHHH
Q 047408 670 VYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 670 ~y~~~g~~~~A~~~~~~m~ 688 (830)
+|...|+.++|.+.+++..
T Consensus 462 ~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 462 VYELKGDNRLAADAYSTAF 480 (517)
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 6666666666666555443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.26 Score=53.35 Aligned_cols=210 Identities=12% Similarity=0.080 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcC---CHHHHHHHhhhCC----CCChhhHHHHHHHHHhcCChHHHHHHH
Q 047408 475 ERGREIHGYILRHGISADRNVANAIVDMYVKCG---VLVLARSLFDMIP----AKDLISWTIMIAGYGMHGFGCDAIATF 547 (830)
Q Consensus 475 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g---~~~~A~~~f~~m~----~~d~~~~~~li~~~~~~g~~~~A~~l~ 547 (830)
+++..+++..+..-...+..+|.++.+.--..- ..+.....+++.. ..-..+|-..+..-.+..-.+.|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 455555555554333334445544443211111 1333334444332 222347778888777777889999999
Q ss_pred HHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC---CC
Q 047408 548 NDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM---PV 623 (830)
Q Consensus 548 ~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m---~~ 623 (830)
.+..+.+..+-.+ ...+++. +.-+++.+-|.++|+.=.+++|-.| +.-.+.+|-|.+-++-..|..+|++. .+
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mE-y~cskD~~~AfrIFeLGLkkf~d~p--~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALME-YYCSKDKETAFRIFELGLKKFGDSP--EYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHhhccCCcchhhHHHHHHH-HHhcCChhHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 9999998888444 4444444 4456888999999998776665443 44567889999999999999999987 23
Q ss_pred CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc----chHHHHHHHHhhhcCHHHHHHHHHHH
Q 047408 624 APD--ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNT----GYYVLLANVYAEAEKWEEVKKLREKI 687 (830)
Q Consensus 624 ~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~----~~~~~l~~~y~~~g~~~~A~~~~~~m 687 (830)
.|| ..+|..+|.--..-||+.....+-++.+..-|.+. ..-..+.+.|.=.+.+..-..-++.|
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 454 47999999999999999999999888876655221 12345556666666655544444433
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.4 Score=55.14 Aligned_cols=223 Identities=13% Similarity=0.086 Sum_probs=121.3
Q ss_pred HHhcCChHHHHHHHHHhhcCCCChhhHHHHHHHHh--ccCChhHHHHHHHHHHHhCCCCCccchHHHHHHHHHhCCChHH
Q 047408 73 FCEVGNLEKAMEVLYSSEKSKIDTKTYCSILQLCA--DLKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKE 150 (830)
Q Consensus 73 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~ 150 (830)
....+++.+|+....+..+..|+ ..|..+++++. +.|..++|..+++.....+ ++|..+...+...|...|+.++
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhH
Confidence 34567788888888887766543 24555565543 6777888887776655444 3346777888888888888888
Q ss_pred HHHHHhcCCCCCc--chHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCC-------CHHHHH
Q 047408 151 GRRVFNKIDNGKV--FIWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSR-------RVKDAH 221 (830)
Q Consensus 151 A~~~f~~m~~~~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~-------~~~~A~ 221 (830)
|..+++.....++ .....+..+|++-+.+.+-.+.--+|-+ .++-+++.|=++++......... -+.-|.
T Consensus 96 ~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 96 AVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 8888887764433 3334455566666655443222222222 23334555555555544322111 223444
Q ss_pred HHHhhCCCCC--c---chHHHHHHHHHhCCChhHHHHHHHH-HHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 047408 222 KLFDELSDRD--V---VSWNCMISGYIANGVAEKGLEVFKE-MLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALK 295 (830)
Q Consensus 222 ~lf~~m~~~~--~---~~~n~li~~~~~~g~~~~A~~l~~~-m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~ 295 (830)
+.++.+.+.+ . .-.-.-...+-..|.+++|++++.. ..+.-...+...-+--+.-....+.+..-.++-..++.
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4555444332 1 1111112233456677777777733 33322222333333444455556666666666666666
Q ss_pred hCCC
Q 047408 296 ACFS 299 (830)
Q Consensus 296 ~g~~ 299 (830)
.|.+
T Consensus 255 k~~D 258 (932)
T KOG2053|consen 255 KGND 258 (932)
T ss_pred hCCc
Confidence 6544
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0012 Score=65.94 Aligned_cols=97 Identities=14% Similarity=0.161 Sum_probs=80.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChhH-HHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcC
Q 047408 532 AGYGMHGFGCDAIATFNDMRQAGIEPDEVS-FISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTG 609 (830)
Q Consensus 532 ~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g 609 (830)
.-+.+.+++.+|+..|.+.++ +.|+..+ |..=..||++.|.++.|++-.+... .+.|. ...|..|.-+|.-.|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccC
Confidence 457788999999999999998 7776655 5556688999999999999888776 57776 788999999999999
Q ss_pred CHHHHHHHHHhC-CCCCCHHHHHHH
Q 047408 610 NLSEAYRFIEMM-PVAPDATIWGSL 633 (830)
Q Consensus 610 ~~~eA~~~~~~m-~~~p~~~~~~~l 633 (830)
++++|++.|++. .+.|+..+|.+=
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~n 188 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSN 188 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHH
Confidence 999999999886 788987665543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00048 Score=53.71 Aligned_cols=57 Identities=18% Similarity=0.239 Sum_probs=45.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 633 LLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 633 ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
+...+...|+++.|+..++++++..|+++..+..++.++...|++++|...++.+.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345567788888888888888888888888888888888888888888888887754
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.018 Score=56.63 Aligned_cols=175 Identities=10% Similarity=0.025 Sum_probs=105.2
Q ss_pred HHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 047408 480 IHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDE 559 (830)
Q Consensus 480 i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~ 559 (830)
+.+.+.......+......-...|.+.|++++|.+.......-+....| +..+.+..+.+-|.+.+++|++ --+.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~---ided 169 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQ---IDED 169 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHc---cchH
Confidence 3344444444444344444455688889999999888874433333333 3345566778888888888886 2345
Q ss_pred hHHHHHHHHHH----ccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHH
Q 047408 560 VSFISVLYACS----HSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM--PVAPDATIWGSL 633 (830)
Q Consensus 560 ~t~~~ll~a~~----~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m--~~~p~~~~~~~l 633 (830)
.|.+-|..++. -.+.+.+|.-+|++|..+ ..|+..+.+-+..+....|+++||+.++++. .-..++.+...+
T Consensus 170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nl 247 (299)
T KOG3081|consen 170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANL 247 (299)
T ss_pred HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 56666665543 345677888888888643 4556666666666666777777777777765 222244444444
Q ss_pred HHHHHhcC-CHHHHHHHHHHHhccCCCCc
Q 047408 634 LCGCRIHH-EVKLAEKVAEHVFELEPDNT 661 (830)
Q Consensus 634 l~~~~~~g-~~~~a~~~~~~~~~l~p~~~ 661 (830)
+-.-...| +.+--.+...++....|+++
T Consensus 248 iv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 248 IVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 44333333 44455566666666677654
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0022 Score=56.87 Aligned_cols=101 Identities=9% Similarity=0.024 Sum_probs=59.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHH
Q 047408 564 SVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPD----ATIWGSLLCGC 637 (830)
Q Consensus 564 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~ 637 (830)
.+...+...|++++|.+.|..+...+.-.| ....+..+..++.+.|++++|.+.++.. ...|+ ..+|..+...+
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 334444455555555555555543321111 1233444666666677777776666654 22232 34566677777
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCcchH
Q 047408 638 RIHHEVKLAEKVAEHVFELEPDNTGYY 664 (830)
Q Consensus 638 ~~~g~~~~a~~~~~~~~~l~p~~~~~~ 664 (830)
...|+.+.|...++++++..|+++...
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 778888888888888888888765443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0014 Score=62.50 Aligned_cols=93 Identities=14% Similarity=-0.069 Sum_probs=74.9
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 047408 595 LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPD----ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLAN 669 (830)
Q Consensus 595 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 669 (830)
...|..++..+...|++++|+..+++. .+.|+ ..+|..+...+...|+.++|+..++++++++|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 445666777788889999999888876 33333 3578889999999999999999999999999999999999999
Q ss_pred HHh-------hhcCHHHHHHHHHHH
Q 047408 670 VYA-------EAEKWEEVKKLREKI 687 (830)
Q Consensus 670 ~y~-------~~g~~~~A~~~~~~m 687 (830)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 998 788888766655443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0085 Score=55.48 Aligned_cols=122 Identities=14% Similarity=0.079 Sum_probs=73.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-h---HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC--cchHHHHH
Q 047408 529 IMIAGYGMHGFGCDAIATFNDMRQAGIEPDE-V---SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK--LEHYACMV 602 (830)
Q Consensus 529 ~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~-~---t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~lv 602 (830)
.++..+ ..|+...+.+.++++... .|+. . ....+...+...|++++|...|+..... .-.|. ....-.|.
T Consensus 17 ~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 17 QALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLA 92 (145)
T ss_pred HHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHH
Confidence 344444 366677777777777764 3333 1 2223335566677777777777776643 22221 12333456
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047408 603 DLLSRTGNLSEAYRFIEMMPVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVF 654 (830)
Q Consensus 603 ~~l~r~g~~~eA~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 654 (830)
.++...|++++|+..++..+..+ .+..+..+...+...|+.++|+..|++++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 67777788888887777653222 34556666667777888888888777653
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.017 Score=60.05 Aligned_cols=88 Identities=19% Similarity=0.202 Sum_probs=74.2
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhc
Q 047408 602 VDLLSRTGNLSEAYRFIEMM-PVAPD-----ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAE 675 (830)
Q Consensus 602 v~~l~r~g~~~eA~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 675 (830)
.+...+.|++.+|.+.+.+. .+.|+ +..|.....+....|+.++|+.-.+.+++++|.-...|..-++.|...+
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999886 55554 4455555566788999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHh
Q 047408 676 KWEEVKKLREKISR 689 (830)
Q Consensus 676 ~~~~A~~~~~~m~~ 689 (830)
+|++|.+-++..-+
T Consensus 336 ~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999887654
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0044 Score=59.36 Aligned_cols=130 Identities=12% Similarity=0.162 Sum_probs=82.8
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHH
Q 047408 523 DLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPD--EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYA 599 (830)
Q Consensus 523 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~ 599 (830)
....|..+...|...|++++|+..|++....+..|+ ...+..+...+.+.|++++|..++..... +.|+ ...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 344667777777778888888888888776433332 23566666777777888888887777663 3343 44555
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcC
Q 047408 600 CMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEK 676 (830)
Q Consensus 600 ~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 676 (830)
.+..+|...|+...+..-++.. ...++.|...++++++++|++ |..+.+.+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 5666666666655554333221 113677888888999999886 5555555555443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00013 Score=48.14 Aligned_cols=32 Identities=34% Similarity=0.535 Sum_probs=30.6
Q ss_pred HHHHhccCCCCcchHHHHHHHHhhhcCHHHHH
Q 047408 650 AEHVFELEPDNTGYYVLLANVYAEAEKWEEVK 681 (830)
Q Consensus 650 ~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~ 681 (830)
++++++++|+++.+|..|+++|...|++++|.
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68999999999999999999999999999986
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.019 Score=55.94 Aligned_cols=170 Identities=15% Similarity=0.117 Sum_probs=123.9
Q ss_pred CCCch-hHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHH---HHHHhcCChHHHHHHHHHHHHcCCCCChhHHHH
Q 047408 489 ISADR-NVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMI---AGYGMHGFGCDAIATFNDMRQAGIEPDEVSFIS 564 (830)
Q Consensus 489 ~~~~~-~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ 564 (830)
..++. .++--++-+..-+|+.+.|..+++.+..+=+-++..+. .-+-..|++++|+++++..++.. +-|.+++..
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KR 125 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKR 125 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHH
Confidence 44443 34555666677889999999999886533222222211 12456799999999999999875 445567776
Q ss_pred HHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-
Q 047408 565 VLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHH- 641 (830)
Q Consensus 565 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g- 641 (830)
=+...-..|.--+|++-+....+ .+..|.+.|.-+.++|...|++++|.=.++++ -+.| ++..+..|...+...|
T Consensus 126 KlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg 203 (289)
T KOG3060|consen 126 KLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG 203 (289)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence 66666677877788887777664 34567899999999999999999999999997 3455 4556666666544443
Q ss_pred --CHHHHHHHHHHHhccCCCCc
Q 047408 642 --EVKLAEKVAEHVFELEPDNT 661 (830)
Q Consensus 642 --~~~~a~~~~~~~~~l~p~~~ 661 (830)
|++.++..+++++++.|.+.
T Consensus 204 ~eN~~~arkyy~~alkl~~~~~ 225 (289)
T KOG3060|consen 204 AENLELARKYYERALKLNPKNL 225 (289)
T ss_pred HHHHHHHHHHHHHHHHhChHhH
Confidence 88999999999999999653
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0042 Score=57.01 Aligned_cols=89 Identities=13% Similarity=0.119 Sum_probs=76.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHH
Q 047408 601 MVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWE 678 (830)
Q Consensus 601 lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 678 (830)
...-+-..|++++|+.+|+-+ -..| +..-|..|...|...++++.|...+..+..++++|+.++...+..|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 334455789999999999886 2233 56678999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 047408 679 EVKKLREKISR 689 (830)
Q Consensus 679 ~A~~~~~~m~~ 689 (830)
.|..-++...+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999887764
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0022 Score=61.45 Aligned_cols=81 Identities=17% Similarity=0.071 Sum_probs=63.2
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 047408 596 EHYACMVDLLSRTGNLSEAYRFIEMM-PVAPD----ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANV 670 (830)
Q Consensus 596 ~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 670 (830)
..|..+...|.+.|++++|.+.+++. ...|+ ...|..+...+...|+++.|...++++++..|+++..+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34566666777777777777777765 22222 35788888888999999999999999999999999888899999
Q ss_pred HhhhcC
Q 047408 671 YAEAEK 676 (830)
Q Consensus 671 y~~~g~ 676 (830)
|...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 988776
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0029 Score=68.20 Aligned_cols=103 Identities=17% Similarity=0.165 Sum_probs=70.4
Q ss_pred HHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 047408 569 CSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKL 645 (830)
Q Consensus 569 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 645 (830)
+...|++++|+++|+.+. .+.|+ ...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|++++
T Consensus 12 a~~~~~~~~Ai~~~~~Al---~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAI---DLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 344566666666666555 23342 445566666777777777777777665 4455 45677777788888888888
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHhhh
Q 047408 646 AEKVAEHVFELEPDNTGYYVLLANVYAEA 674 (830)
Q Consensus 646 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 674 (830)
|+..++++++++|+++.....+..+..+.
T Consensus 89 A~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 89 AKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 88888888888888887777766554444
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.022 Score=67.05 Aligned_cols=170 Identities=9% Similarity=0.084 Sum_probs=106.8
Q ss_pred CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHH-HhcCCChHHHHHHHHHHHHhCCCCCchHHHH
Q 047408 229 DRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSG-CANCGALMFGRAVHAFALKACFSKEISFNNT 307 (830)
Q Consensus 229 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a-~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~ 307 (830)
..+...|..|+..|...+++++|.++.++-.+ ..|+...+-..+.. +.+.+....+-.+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~--~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~ 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLK--EHKKSISALYISGILSLSRRPLNDSNLL-----------------N 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCcceehHHHHHHHHHhhcchhhhhhh-----------------h
Confidence 34667899999999999999999999986655 45666554333322 2223332222222 3
Q ss_pred HHHHhhcCCChHHHHHHHhhcCC--CCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcch
Q 047408 308 LLDMYSKCGDLDGAIRVFEKMGE--RSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLE 385 (830)
Q Consensus 308 Li~~y~k~g~~~~A~~~f~~m~~--~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~ 385 (830)
+++...+..++.....+.+.|.. .+..++-.+..+|-+.|+.++|...++++++.. +-|....+.+...++.. +++
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 33333344444333333333332 123356667778888888888888888888765 33455666666667777 888
Q ss_pred hhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCc
Q 047408 386 IGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDI 434 (830)
Q Consensus 386 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~ 434 (830)
.|+++...++.. |....++..+..++.++..-++
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~ 200 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNS 200 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCc
Confidence 888877776544 6666778888888877765543
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0022 Score=54.22 Aligned_cols=88 Identities=15% Similarity=0.104 Sum_probs=70.9
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCC-CCCcccHHHHHHHHHhcCCCCCHHHHHHHHhhCCCCCcchHHHHHHHHH
Q 047408 165 IWNLLMHEYSKTGNFKESLYLFKKMQSLGI-AADSYTFSCVLKCLAVVGNSRRVKDAHKLFDELSDRDVVSWNCMISGYI 243 (830)
Q Consensus 165 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~g~~~~~~~A~~lf~~m~~~~~~~~n~li~~~~ 243 (830)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.+|.+.++..- +. ..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~l----D~----------------------~~ 80 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKREL----DS----------------------ED 80 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccc----cc----------------------hh
Confidence 334566777777999999999999999999 9999999999999887541 10 11
Q ss_pred hCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 047408 244 ANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCA 278 (830)
Q Consensus 244 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 278 (830)
-.++.-+.+.+|+.|...+++|+..||+.++..+.
T Consensus 81 ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Ll 115 (120)
T PF08579_consen 81 IENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLL 115 (120)
T ss_pred HHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 22345678899999999999999999999998764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.4 Score=49.91 Aligned_cols=240 Identities=18% Similarity=0.152 Sum_probs=157.6
Q ss_pred hcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchh
Q 047408 415 KCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRN 494 (830)
Q Consensus 415 k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~ 494 (830)
-.|+.++|++-|+.|...-. |+ ..-+..+.-.--..|+.+.+++.-+..-..- +.-..
T Consensus 132 ~eG~~~~Ar~kfeAMl~dPE---------------tR------llGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~W 189 (531)
T COG3898 132 LEGDYEDARKKFEAMLDDPE---------------TR------LLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPW 189 (531)
T ss_pred hcCchHHHHHHHHHHhcChH---------------HH------HHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCch
Confidence 35888888888888854210 00 0111122222345677777777766655432 23356
Q ss_pred HHhHHHHHHHhcCCHHHHHHHhhhCC-----CCChh--hHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCChhH-HH
Q 047408 495 VANAIVDMYVKCGVLVLARSLFDMIP-----AKDLI--SWTIMIAGYGM---HGFGCDAIATFNDMRQAGIEPDEVS-FI 563 (830)
Q Consensus 495 ~~~~Li~~y~k~g~~~~A~~~f~~m~-----~~d~~--~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~Pd~~t-~~ 563 (830)
.+.+++...+..|+++.|.++.+.-. ++|+. .--.|+.+-++ .-+...|...-.+..+ +.||.+- -+
T Consensus 190 A~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav 267 (531)
T COG3898 190 AARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAV 267 (531)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHH
Confidence 77889999999999999999998643 45543 22334433322 2456667766666555 7888874 44
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHH
Q 047408 564 SVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM----PVAPD-ATIWGSLLCGCR 638 (830)
Q Consensus 564 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~-~~~~~~ll~~~~ 638 (830)
.-..++.+.|++.+|-.+++.+- ...|.+......+ +.|.|+.. +.-+++. .++|| ...-.++..+-.
T Consensus 268 ~AAralf~d~~~rKg~~ilE~aW---K~ePHP~ia~lY~--~ar~gdta--~dRlkRa~~L~slk~nnaes~~~va~aAl 340 (531)
T COG3898 268 VAARALFRDGNLRKGSKILETAW---KAEPHPDIALLYV--RARSGDTA--LDRLKRAKKLESLKPNNAESSLAVAEAAL 340 (531)
T ss_pred HHHHHHHhccchhhhhhHHHHHH---hcCCChHHHHHHH--HhcCCCcH--HHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 45578899999999999999986 4566665554333 44566432 2222211 34665 456666777778
Q ss_pred hcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhh-cCHHHHHHHHHH
Q 047408 639 IHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEA-EKWEEVKKLREK 686 (830)
Q Consensus 639 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~-g~~~~A~~~~~~ 686 (830)
..|++..|+.-++.+...+|. .++|.+|+++-... |+-+++....-+
T Consensus 341 da~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAq 388 (531)
T COG3898 341 DAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQ 388 (531)
T ss_pred hccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHH
Confidence 889999999999999999998 47899999997766 887776665443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0017 Score=50.62 Aligned_cols=61 Identities=26% Similarity=0.276 Sum_probs=51.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 047408 601 MVDLLSRTGNLSEAYRFIEMM-PVAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNT 661 (830)
Q Consensus 601 lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~ 661 (830)
+...+.+.|++++|++.|++. ...|+ ...|..+...+...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456788899999999999987 55674 57899999999999999999999999999999874
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0019 Score=51.70 Aligned_cols=55 Identities=20% Similarity=0.223 Sum_probs=49.5
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 635 CGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 635 ~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
..+...++++.|..+++++++++|+++..+...+.+|...|++++|.+.++...+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4577889999999999999999999999999999999999999999999887765
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.64 Score=49.49 Aligned_cols=187 Identities=13% Similarity=0.110 Sum_probs=110.3
Q ss_pred HHhHHHHHHHhcCCHHHHHHHhhhCC--CCChh-------hHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCChhH
Q 047408 495 VANAIVDMYVKCGVLVLARSLFDMIP--AKDLI-------SWTIMIAGYG----MHGFGCDAIATFNDMRQAGIEPDEVS 561 (830)
Q Consensus 495 ~~~~Li~~y~k~g~~~~A~~~f~~m~--~~d~~-------~~~~li~~~~----~~g~~~~A~~l~~~m~~~g~~Pd~~t 561 (830)
.+..++....+.++...|.+.+.-+. .|+.. +--++-+..+ .+-+..+=+.++++.... ..|..-
T Consensus 300 ~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~--DiDrqQ 377 (549)
T PF07079_consen 300 RFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSY--DIDRQQ 377 (549)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhh--cccHHH
Confidence 44555566667777777777665443 22211 1111222222 223344455566665553 334433
Q ss_pred HHHHH----HHHHccCC-HHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhc-----------CCHHHHHHHHHhCCCCC
Q 047408 562 FISVL----YACSHSGL-VDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRT-----------GNLSEAYRFIEMMPVAP 625 (830)
Q Consensus 562 ~~~ll----~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~-----------g~~~eA~~~~~~m~~~p 625 (830)
.+.-+ .-+-+.|. -+.|+.+++.+. .+.|.....-..|-.+.+. -++=+-+.++++.++.|
T Consensus 378 Lvh~L~~~Ak~lW~~g~~dekalnLLk~il---~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~ 454 (549)
T PF07079_consen 378 LVHYLVFGAKHLWEIGQCDEKALNLLKLIL---QFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTP 454 (549)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHH---HhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 22211 22445555 667778777765 3344221222222221111 12334456677776655
Q ss_pred ----CHHHHHHHHHH--HHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHH
Q 047408 626 ----DATIWGSLLCG--CRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKI 687 (830)
Q Consensus 626 ----~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 687 (830)
+..+-|-|-.| ...+|++.++.....=+.++.| ++.+|-+++-.+....+++||.+++..+
T Consensus 455 i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 455 ITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred ccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 33566777776 5789999999999999999999 7999999999999999999999998754
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.015 Score=58.60 Aligned_cols=102 Identities=17% Similarity=0.104 Sum_probs=86.9
Q ss_pred CC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHhccCCCCcchHH
Q 047408 592 EP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIH---HEVKLAEKVAEHVFELEPDNTGYYV 665 (830)
Q Consensus 592 ~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~l~p~~~~~~~ 665 (830)
.| |.+-|--|...|.+.|+.++|..-|.+. .+.| ++.++..+..++... ....++..++++++.++|.|.....
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 45 6899999999999999999999999887 4555 467777777765333 2678899999999999999999999
Q ss_pred HHHHHHhhhcCHHHHHHHHHHHHhCCCc
Q 047408 666 LLANVYAEAEKWEEVKKLREKISRRGLK 693 (830)
Q Consensus 666 ~l~~~y~~~g~~~~A~~~~~~m~~~g~~ 693 (830)
.|+-.+...|++.+|...++.|.+....
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999875543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.017 Score=55.01 Aligned_cols=109 Identities=12% Similarity=0.099 Sum_probs=66.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHH
Q 047408 524 LISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPD--EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYAC 600 (830)
Q Consensus 524 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~ 600 (830)
...|..+...+...|++++|+..|++.......|. ..++..+...+.+.|+.++|+.+++.... +.|+ ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHH
Confidence 34566677777778888888888888876422222 13566666777777888888877777652 3333 334444
Q ss_pred HHHHHH-------hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 047408 601 MVDLLS-------RTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDN 660 (830)
Q Consensus 601 lv~~l~-------r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~ 660 (830)
+...|. +.|++++|+. .+++|...++++++.+|++
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~-------------------------~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEA-------------------------WFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHH-------------------------HHHHHHHHHHHHHHhCccc
Confidence 555554 2333333222 2345666777888888864
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0069 Score=50.39 Aligned_cols=57 Identities=14% Similarity=0.118 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHccCCHHHHHHHHHHh
Q 047408 527 WTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDE-VSFISVLYACSHSGLVDEGWRFFNMM 585 (830)
Q Consensus 527 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m 585 (830)
|..+...+...|++++|+..|++..+. .|+. ..+..+...+...|++++|.++|+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 60 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666653 3332 33444444444455555555555444
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.088 Score=51.90 Aligned_cols=116 Identities=18% Similarity=0.114 Sum_probs=57.7
Q ss_pred HHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCC
Q 047408 567 YACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCR----IHHE 642 (830)
Q Consensus 567 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~----~~g~ 642 (830)
.-|.|.|+.++|.+..... -+.+....=|..+.|..+++-|.+.+++|.--.+..+.+-|..++. -.+.
T Consensus 116 ~i~~~~~~~deAl~~~~~~-------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLG-------ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred HHhhcCCChHHHHHHHhcc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchh
Confidence 4456666666666554431 1234444445555555566666666665532222233333333321 1224
Q ss_pred HHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 643 VKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 643 ~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
+..|.-+|+.+-+.-|..+....-++.+....|||++|..+.+...+
T Consensus 189 ~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 189 IQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred hhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 55555555555554444455555555555566666666665555543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.022 Score=64.23 Aligned_cols=49 Identities=14% Similarity=0.010 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhcc--CCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCC
Q 047408 643 VKLAEKVAEHVFEL--EPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRG 691 (830)
Q Consensus 643 ~~~a~~~~~~~~~l--~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g 691 (830)
.+.+...++++..+ +|.++..|..++-++...|++++|...++++.+.+
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ 450 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE 450 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 45566666676664 77778889999999999999999999999988755
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.23 Score=51.57 Aligned_cols=178 Identities=16% Similarity=0.168 Sum_probs=127.6
Q ss_pred cCCHHHHHHHhhhCC---CCChhhHHHHHHH--HHhcCChHHHHHHHHHHHHcCCCCChh--HHHHHHHHHHccCCHHHH
Q 047408 506 CGVLVLARSLFDMIP---AKDLISWTIMIAG--YGMHGFGCDAIATFNDMRQAGIEPDEV--SFISVLYACSHSGLVDEG 578 (830)
Q Consensus 506 ~g~~~~A~~~f~~m~---~~d~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~Pd~~--t~~~ll~a~~~~g~~~~a 578 (830)
.|+-..|+++-.+.. ..|....--++.+ -.-.|++++|.+-|+.|.. .|... -+..|.-.-.+.|..+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHH
Confidence 456666665554332 2333333333332 2346899999999999986 34332 345555556788999999
Q ss_pred HHHHHHhHhhcCCCCCc-chHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHH--HHHHHHHH---HHhcCCHHHHHH
Q 047408 579 WRFFNMMRYECNIEPKL-EHYACMVDLLSRTGNLSEAYRFIEMM----PVAPDAT--IWGSLLCG---CRIHHEVKLAEK 648 (830)
Q Consensus 579 ~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~~~--~~~~ll~~---~~~~g~~~~a~~ 648 (830)
++|-+... +..|.. -.....++..+..|+|+.|+++++.- -+++|.. .--.||.+ -....+...|..
T Consensus 174 r~yAe~Aa---~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 174 RHYAERAA---EKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHH---hhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 99988765 566763 46678889999999999999999875 3566652 33344544 234457888999
Q ss_pred HHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 649 VAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 649 ~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
.+.+..++.|+-...-+.-+..|.+.|+..++..+++.+-+
T Consensus 251 ~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK 291 (531)
T COG3898 251 DALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWK 291 (531)
T ss_pred HHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHh
Confidence 99999999999888888999999999999999999988764
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0015 Score=51.39 Aligned_cols=63 Identities=25% Similarity=0.337 Sum_probs=39.2
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 047408 607 RTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLAN 669 (830)
Q Consensus 607 r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 669 (830)
..|++++|+++++++ ...| +..++..+...|...|++++|+..++++...+|+++..+.+++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 456666666666665 3334 45566666666777777777777777777777776555555543
|
... |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.019 Score=53.06 Aligned_cols=99 Identities=20% Similarity=0.219 Sum_probs=52.0
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC--CcchH
Q 047408 590 NIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM---PVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPD--NTGYY 664 (830)
Q Consensus 590 ~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~--~~~~~ 664 (830)
.+.|++.+--.|...+.+.|+..||...|++. ++.-|......+..+...-++...|...++++.+-.|. .+...
T Consensus 84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 44455555555555555555555555555554 33344555555555555555555555555555555543 33344
Q ss_pred HHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 665 VLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 665 ~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
.+++..|+..|+..+|+.-++...
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~ 187 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAI 187 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHH
Confidence 555555555555555555554443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.031 Score=58.10 Aligned_cols=135 Identities=13% Similarity=0.138 Sum_probs=94.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH-HHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 047408 525 ISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYA-CSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVD 603 (830)
Q Consensus 525 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~ 603 (830)
..|-.++...-+.+..+.|..+|.+.++.+ .-+...|...... +...++.+.|..+|+...+.++ .+...+...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~--~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFP--SDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT--T-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHH
Confidence 356777777777777788888888887432 2233344444333 3335666668999988876543 35567888889
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcc
Q 047408 604 LLSRTGNLSEAYRFIEMM-PVAPD----ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTG 662 (830)
Q Consensus 604 ~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~ 662 (830)
.+.+.|+.+.|..+|++. ..-|. ..+|...+.--..+|+++....+.+++.+.-|++..
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~ 142 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS 142 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence 999999999999999886 22233 359999999999999999999999999998888543
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0039 Score=51.49 Aligned_cols=80 Identities=15% Similarity=0.238 Sum_probs=46.2
Q ss_pred cCChHHHHHHHHHHHHcCC-CCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHH
Q 047408 537 HGFGCDAIATFNDMRQAGI-EPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEA 614 (830)
Q Consensus 537 ~g~~~~A~~l~~~m~~~g~-~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA 614 (830)
.|++++|+.+|+++.+... .|+...+..+..++.+.|++++|..+++. . ...|. ....-.+..+|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 5777778888887777422 12333444466677777777777777766 1 22232 22233446667777777777
Q ss_pred HHHHHh
Q 047408 615 YRFIEM 620 (830)
Q Consensus 615 ~~~~~~ 620 (830)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 776654
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.59 E-value=1.3 Score=46.78 Aligned_cols=122 Identities=15% Similarity=0.150 Sum_probs=87.2
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHH
Q 047408 497 NAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVD 576 (830)
Q Consensus 497 ~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~ 576 (830)
+.-|.-+...|+...|.++..+..-||-.-|-..|.+|+..|++++-.++... +-.++-|-.++.+|...|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 33455566778888899998888888888899999999999998876665332 123477888888888889888
Q ss_pred HHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047408 577 EGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCR 638 (830)
Q Consensus 577 ~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~ 638 (830)
+|..+...+. +.--+.+|.++|.+.+|.+.--+. -|...+.-+..-|.
T Consensus 255 eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~---kd~~~L~~i~~~~~ 302 (319)
T PF04840_consen 255 EASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE---KDIDLLKQILKRCP 302 (319)
T ss_pred HHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc---CCHHHHHHHHHHCC
Confidence 8888876532 356678888899988887764443 24444444444433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.021 Score=58.28 Aligned_cols=93 Identities=11% Similarity=0.037 Sum_probs=63.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc---chHHHHH
Q 047408 597 HYACMVDLLSRTGNLSEAYRFIEMM-PVAPD----ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNT---GYYVLLA 668 (830)
Q Consensus 597 ~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~---~~~~~l~ 668 (830)
.|..-++++.+.|++++|...|+.. ...|+ ..++--+...+...|+++.|...|+++++..|+++ ..+..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 4555555556667777777776665 22232 23455566677788888888888888887777653 4455667
Q ss_pred HHHhhhcCHHHHHHHHHHHHh
Q 047408 669 NVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 669 ~~y~~~g~~~~A~~~~~~m~~ 689 (830)
.+|...|++++|.++++...+
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 788888888888888776653
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.24 Score=51.63 Aligned_cols=89 Identities=17% Similarity=0.145 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhcCCHHHHHHHHHhCC---CC-----CCH-HHHHHHHHHHHh
Q 047408 573 GLVDEGWRFFNMMRYECNIEPK----LEHYACMVDLLSRTGNLSEAYRFIEMMP---VA-----PDA-TIWGSLLCGCRI 639 (830)
Q Consensus 573 g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lv~~l~r~g~~~eA~~~~~~m~---~~-----p~~-~~~~~ll~~~~~ 639 (830)
|++++|.++|+....-|.-.-. ...+.-+.+++.+.|++++|.++|++.. .+ .+. ..+...+-.+..
T Consensus 129 ~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~ 208 (282)
T PF14938_consen 129 GDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA 208 (282)
T ss_dssp --HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 4555555555544332221111 2345566777888888888888887751 11 111 112222223455
Q ss_pred cCCHHHHHHHHHHHhccCCCCc
Q 047408 640 HHEVKLAEKVAEHVFELEPDNT 661 (830)
Q Consensus 640 ~g~~~~a~~~~~~~~~l~p~~~ 661 (830)
.||...|...+++..+.+|.-.
T Consensus 209 ~~D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 209 MGDYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp TT-HHHHHHHHHHHGTTSTTST
T ss_pred cCCHHHHHHHHHHHHhhCCCCC
Confidence 6889999999999888888643
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.023 Score=50.04 Aligned_cols=85 Identities=18% Similarity=0.042 Sum_probs=65.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC---CcchHHHHHHHHh
Q 047408 601 MVDLLSRTGNLSEAYRFIEMM---PVAPD--ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPD---NTGYYVLLANVYA 672 (830)
Q Consensus 601 lv~~l~r~g~~~eA~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~---~~~~~~~l~~~y~ 672 (830)
+..++...|+.++|+.++++. +.... ...+-.+.+.++..|++++|..++++.++-.|+ +....+.++-.+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 345666778888888888875 22221 245667788899999999999999999888787 6667778888899
Q ss_pred hhcCHHHHHHHHH
Q 047408 673 EAEKWEEVKKLRE 685 (830)
Q Consensus 673 ~~g~~~~A~~~~~ 685 (830)
..|+++||.+..-
T Consensus 87 ~~gr~~eAl~~~l 99 (120)
T PF12688_consen 87 NLGRPKEALEWLL 99 (120)
T ss_pred HCCCHHHHHHHHH
Confidence 9999999988754
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.2 Score=46.66 Aligned_cols=128 Identities=13% Similarity=0.070 Sum_probs=97.7
Q ss_pred CCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-C-----CCCCH
Q 047408 555 IEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-P-----VAPDA 627 (830)
Q Consensus 555 ~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~-----~~p~~ 627 (830)
..|+...-..|..+....|+..||...|++... |+-. |....-.+..+....|+..+|...+++. . -.||.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 567777777888889999999999999988753 4433 4556667777788889999998888876 2 23443
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHH
Q 047408 628 TIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKI 687 (830)
Q Consensus 628 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 687 (830)
-..+...+...|..+.|+..++.++.-.|+ +..-...+.+++++|+.++|..-....
T Consensus 163 --~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 163 --HLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred --hHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 344566788899999999999999998887 455666788999999999887654444
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0047 Score=48.71 Aligned_cols=64 Identities=19% Similarity=0.250 Sum_probs=53.8
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHHhccCC
Q 047408 595 LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPD-ATIWGSLLCGCRIHH-EVKLAEKVAEHVFELEP 658 (830)
Q Consensus 595 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~l~p 658 (830)
...|..+...+.+.|++++|++.|++. ...|+ ..+|..+..++...| +.++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456777888888899999999888876 55564 578888888999999 79999999999999988
|
... |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.01 Score=63.52 Aligned_cols=63 Identities=22% Similarity=0.018 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcch---HHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 627 ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGY---YVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 627 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~---~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
...|+.+..+|...|++++|...++++++++|+++.+ |..++.+|...|+.++|.+.+++..+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566666666666666666666666666666666543 66666666666666666666665554
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.047 Score=48.14 Aligned_cols=91 Identities=15% Similarity=0.123 Sum_probs=68.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChh--HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHH
Q 047408 530 MIAGYGMHGFGCDAIATFNDMRQAGIEPDEV--SFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLS 606 (830)
Q Consensus 530 li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~ 606 (830)
+..++-..|+.++|+.+|++....|+..... .+..+.+++...|++++|..+++....++.-.+ +......+...+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 4567778899999999999999988776533 577788999999999999999998876542211 1122233445778
Q ss_pred hcCCHHHHHHHHHh
Q 047408 607 RTGNLSEAYRFIEM 620 (830)
Q Consensus 607 r~g~~~eA~~~~~~ 620 (830)
..|+.+||++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 88999999887644
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.039 Score=52.96 Aligned_cols=126 Identities=15% Similarity=0.185 Sum_probs=86.6
Q ss_pred HHHHhcC--CCCCcchHHHHHHHHHh-----CCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHH
Q 047408 152 RRVFNKI--DNGKVFIWNLLMHEYSK-----TGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRRVKDAHKLF 224 (830)
Q Consensus 152 ~~~f~~m--~~~~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~A~~lf 224 (830)
...|+.. ..+|-.+|..+|..|.+ +|..+=....+..|.+.|+.-|..+|+.||+.+=+ |.. .-..+|
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~f----vp~n~f 108 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKF----VPRNFF 108 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCc----ccccHH
Confidence 4455554 45667777777777764 47777788889999999999999999999998864 210 011111
Q ss_pred hhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCC-hHHHHHHHHHHHH
Q 047408 225 DELSDRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGA-LMFGRAVHAFALK 295 (830)
Q Consensus 225 ~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~-~~~~~~l~~~~~~ 295 (830)
+.+ --- .-.+-+-|++++++|...|+-||..|+..+++.+++.+. ....+++.-++-+
T Consensus 109 Q~~-----------F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 109 QAE-----------FMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred HHH-----------hcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 111 001 122456799999999999999999999999999977663 3344444444443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.048 Score=49.98 Aligned_cols=90 Identities=8% Similarity=-0.047 Sum_probs=45.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhH-HHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHH
Q 047408 526 SWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVS-FISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVD 603 (830)
Q Consensus 526 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~ 603 (830)
..-++..-+.+.|++++|..+|+-... +.|.... |..|...|...|++++|+..|.... -+.|+ ...+-.+..
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~---~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA---QIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH---hcCCCCchHHHHHHH
Confidence 333444445556666666666666555 4555443 3344444445556666666555543 23332 344444445
Q ss_pred HHHhcCCHHHHHHHHHh
Q 047408 604 LLSRTGNLSEAYRFIEM 620 (830)
Q Consensus 604 ~l~r~g~~~eA~~~~~~ 620 (830)
+|...|+.++|.+-|+.
T Consensus 112 c~L~lG~~~~A~~aF~~ 128 (157)
T PRK15363 112 CYLACDNVCYAIKALKA 128 (157)
T ss_pred HHHHcCCHHHHHHHHHH
Confidence 55555555555555443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.021 Score=54.79 Aligned_cols=90 Identities=16% Similarity=0.216 Sum_probs=65.5
Q ss_pred CCChhhHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccC----------------CHHHHH
Q 047408 521 AKDLISWTIMIAGYGMH-----GFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSG----------------LVDEGW 579 (830)
Q Consensus 521 ~~d~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g----------------~~~~a~ 579 (830)
.+|-.+|..+|..|.++ |+.+=....++.|.+-|+.-|..+|+.||..+=+.. +.+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 45556666666665533 566666666777777777777777877777665421 346788
Q ss_pred HHHHHhHhhcCCCCCcchHHHHHHHHHhcCCH
Q 047408 580 RFFNMMRYECNIEPKLEHYACMVDLLSRTGNL 611 (830)
Q Consensus 580 ~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~ 611 (830)
+++++|. ++|+-||.+++..+++.+|+.+..
T Consensus 124 ~lL~qME-~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 124 DLLEQME-NNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHH-HcCCCCcHHHHHHHHHHhccccHH
Confidence 9999997 669999999999999999887753
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.041 Score=57.68 Aligned_cols=108 Identities=17% Similarity=0.175 Sum_probs=85.1
Q ss_pred HHHHhcCCHHHHHHHHHhC--------CCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHH
Q 047408 603 DLLSRTGNLSEAYRFIEMM--------PVAP---------DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYV 665 (830)
Q Consensus 603 ~~l~r~g~~~eA~~~~~~m--------~~~p---------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~ 665 (830)
+.|.+.|++..|...|++. +..+ -..+++.|...|.+.+++..|+....++++++|+|.-+..
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALy 295 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALY 295 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHH
Confidence 3455666666666655542 1111 1235666777788899999999999999999999999999
Q ss_pred HHHHHHhhhcCHHHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCcCCCChhHHHHHHHHHHHHHHH
Q 047408 666 LLANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIEIKGKVNIFVAGGSSHPHAKKIESLLKRLRLEMKR 736 (830)
Q Consensus 666 ~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~~~swi~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~~~~ 736 (830)
.-+.+|...|.+++|...++++.+ ..|.+..|...|..+..++++
T Consensus 296 RrG~A~l~~~e~~~A~~df~ka~k--------------------------~~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 296 RRGQALLALGEYDLARDDFQKALK--------------------------LEPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHH--------------------------hCCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999998875 467788999999888877765
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.043 Score=59.41 Aligned_cols=82 Identities=12% Similarity=0.147 Sum_probs=57.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHH
Q 047408 335 SWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYA 414 (830)
Q Consensus 335 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 414 (830)
+..++|+.|.+.|..++++.+++.=...|+-||.+|++.|+..+.+.|++..|.++...|...+...+..++.--+..+.
T Consensus 105 t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 105 THHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 44577777777777777777777777777777777777777777777777777777777776665555555544444444
Q ss_pred hc
Q 047408 415 KC 416 (830)
Q Consensus 415 k~ 416 (830)
++
T Consensus 185 ~~ 186 (429)
T PF10037_consen 185 KY 186 (429)
T ss_pred Hh
Confidence 44
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.34 E-value=1.2 Score=43.83 Aligned_cols=213 Identities=19% Similarity=0.116 Sum_probs=151.0
Q ss_pred hHHHHHHHHHHHHHhCCC-CchhHHhHHHHHHHhcCCHHHHHHHhhhCC-----CCChhhHHHHHHHHHhcCChHHHHHH
Q 047408 473 ALERGREIHGYILRHGIS-ADRNVANAIVDMYVKCGVLVLARSLFDMIP-----AKDLISWTIMIAGYGMHGFGCDAIAT 546 (830)
Q Consensus 473 ~~~~a~~i~~~~~~~g~~-~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~-----~~d~~~~~~li~~~~~~g~~~~A~~l 546 (830)
....+...+......... ............+...+.+..+...+.... ......+..+...+...+...++++.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 333444444444443322 135677778888888999998888887654 33455677777788888889999999
Q ss_pred HHHHHHcCCCCChhHHHHHHH-HHHccCCHHHHHHHHHHhHhhcCCCC----CcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 047408 547 FNDMRQAGIEPDEVSFISVLY-ACSHSGLVDEGWRFFNMMRYECNIEP----KLEHYACMVDLLSRTGNLSEAYRFIEMM 621 (830)
Q Consensus 547 ~~~m~~~g~~Pd~~t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~y~~lv~~l~r~g~~~eA~~~~~~m 621 (830)
+.........+. ........ ++...|.++++...+..... ..| ....+......+...|+.++|...+.+.
T Consensus 118 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 118 LEKALALDPDPD-LAEALLALGALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHcCCCCcc-hHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 999887433331 22222223 78899999999999998742 333 2334444445567789999999988886
Q ss_pred -CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 622 -PVAPD--ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 622 -~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
...|+ ...+..+...+...++.+.+...+..+++..|.....+..++..+...|.++++.........
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444 577888888899999999999999999999998666777788888877789999887776654
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.35 Score=50.78 Aligned_cols=263 Identities=13% Similarity=0.017 Sum_probs=139.7
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCcc-hHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChH
Q 047408 342 GYAREGVFDGAIRLFRGMVREGIEPDVY-AITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMA 420 (830)
Q Consensus 342 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~ 420 (830)
.+.+...+.+|+..+....+.. ||.. -|..-+..+...++++.+.--.+.-++.. +.......-.-..+...+...
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHH
Confidence 4455556666777776666542 3332 22223333333444444333222222211 011112223334444555555
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCC--CCCccccccchhhh-cchhhHHHHHHHHHHHHHhCCCCchhHHh
Q 047408 421 DAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNF--EPDGVTMACILPAC-ASLAALERGREIHGYILRHGISADRNVAN 497 (830)
Q Consensus 421 ~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~--~pd~~t~~~ll~a~-~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 497 (830)
+|.+.++. .++ + ....++.......... +|.-.++-.+-.-| ...++.+.+.++-..+.+..- ...+.
T Consensus 135 ~A~~~~~~---~~~--~-~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~---~n~~a 205 (486)
T KOG0550|consen 135 EAEEKLKS---KQA--Y-KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA---TNAEA 205 (486)
T ss_pred HHHHHhhh---hhh--h-HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc---chhHH
Confidence 66655551 111 1 0111333333332222 34444444443333 467888888888777776431 11122
Q ss_pred HHH--HHHHhcCCHHHHHHHhhhCCCCChh---------------hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh
Q 047408 498 AIV--DMYVKCGVLVLARSLFDMIPAKDLI---------------SWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV 560 (830)
Q Consensus 498 ~Li--~~y~k~g~~~~A~~~f~~m~~~d~~---------------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~ 560 (830)
.++ ..+--.++.+.|..-|++...-|+. .|.-=.+-..++|++.+|.+.|.+.+. +.|+.+
T Consensus 206 l~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~--idP~n~ 283 (486)
T KOG0550|consen 206 LYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN--IDPSNK 283 (486)
T ss_pred HHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc--CCcccc
Confidence 222 2233457888899999877643332 233333456788999999999999886 555544
Q ss_pred -----HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC
Q 047408 561 -----SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM 621 (830)
Q Consensus 561 -----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m 621 (830)
.|.....+..+.|+.++|+.-.+... .|.|. +..|--=..++.-.+.|++|.+-+++.
T Consensus 284 ~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 284 KTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred chhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555567788999999998887765 44443 233333334455567889998888775
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.28 E-value=2 Score=45.84 Aligned_cols=126 Identities=17% Similarity=0.195 Sum_probs=81.6
Q ss_pred HHhcCC-HHHHHHHhhhCC---CCChhhHHHHH----HHHHhc---CChHHHHHHHHHHHHcCCCCChhH----HHHHHH
Q 047408 503 YVKCGV-LVLARSLFDMIP---AKDLISWTIMI----AGYGMH---GFGCDAIATFNDMRQAGIEPDEVS----FISVLY 567 (830)
Q Consensus 503 y~k~g~-~~~A~~~f~~m~---~~d~~~~~~li----~~~~~~---g~~~~A~~l~~~m~~~g~~Pd~~t----~~~ll~ 567 (830)
|-+.|. -++|.++++.+. .-|...-|... ..|.+. ....+-+.+-+-..+.|+.|-.+. -+.|..
T Consensus 389 lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaD 468 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLAD 468 (549)
T ss_pred HHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHH
Confidence 444454 777888877654 34555444432 233322 123444444445556788876654 233333
Q ss_pred H--HHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 047408 568 A--CSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSL 633 (830)
Q Consensus 568 a--~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~l 633 (830)
| +-..|++.++.-+-.... .+.|++.+|..++-.+....+++||.+++.+.| |+..+|++=
T Consensus 469 AEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~dsk 531 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDSK 531 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHHH
Confidence 3 456788888877766665 688999999999888889999999999999986 576666643
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.035 Score=60.09 Aligned_cols=118 Identities=12% Similarity=0.056 Sum_probs=94.6
Q ss_pred CCCccccccchhhhcchhhHHHHHHHHHHHHHh--CCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC----CCChhhHH
Q 047408 455 EPDGVTMACILPACASLAALERGREIHGYILRH--GISADRNVANAIVDMYVKCGVLVLARSLFDMIP----AKDLISWT 528 (830)
Q Consensus 455 ~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~--g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~----~~d~~~~~ 528 (830)
+.+.+.+..+++.|.+..+++.++.++-..... ....-..+..++|..|.+.|..++|..+++.=. -+|..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 556677788888898888899888887776654 222334555689999999999999999887533 47888999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcc
Q 047408 529 IMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHS 572 (830)
Q Consensus 529 ~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~ 572 (830)
.+|..+.+.|++..|.++..+|...+...+..|+.--+.+|.+-
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999998888888888887777777765
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.007 Score=42.72 Aligned_cols=42 Identities=24% Similarity=0.371 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 047408 628 TIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLAN 669 (830)
Q Consensus 628 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 669 (830)
.+|..+..++...|++++|+.+++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367888899999999999999999999999999988877764
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.35 Score=53.28 Aligned_cols=56 Identities=11% Similarity=0.053 Sum_probs=40.1
Q ss_pred ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCC
Q 047408 266 DLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGE 330 (830)
Q Consensus 266 d~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~ 330 (830)
+..+...+-.-+.+...+..|-+++..+-.. .+++++....+++++|.++-+..|+
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 3344444444455666777777777665432 5688999999999999999999987
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.065 Score=45.60 Aligned_cols=81 Identities=12% Similarity=0.101 Sum_probs=63.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCChhHHHHHHHHHHccC--------CHHHHHHHHHHhHhhcCCCCCcc
Q 047408 526 SWTIMIAGYGMHGFGCDAIATFNDMRQAGI-EPDEVSFISVLYACSHSG--------LVDEGWRFFNMMRYECNIEPKLE 596 (830)
Q Consensus 526 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~Pd~~t~~~ll~a~~~~g--------~~~~a~~~~~~m~~~~~~~p~~~ 596 (830)
|-...|.-+...|++.....+|+.+++.|+ -|...+|+.+|.+..+.. .+-+.+.+++.|... +++|+.+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHH
Confidence 444567777777999999999999999999 899999999998866543 244566777777744 7888888
Q ss_pred hHHHHHHHHHh
Q 047408 597 HYACMVDLLSR 607 (830)
Q Consensus 597 ~y~~lv~~l~r 607 (830)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 88888877654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.014 Score=46.61 Aligned_cols=64 Identities=20% Similarity=0.248 Sum_probs=52.6
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHH
Q 047408 603 DLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVL 666 (830)
Q Consensus 603 ~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 666 (830)
..|.+.+++++|.+.++.+ ...| +...|......+...|+++.|...++++++..|+++.....
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 5678889999999999887 5556 45778888888899999999999999999999987655443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.056 Score=56.14 Aligned_cols=129 Identities=12% Similarity=0.140 Sum_probs=99.9
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHh-cCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 047408 560 VSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSR-TGNLSEAYRFIEMM--PVAPDATIWGSLLCG 636 (830)
Q Consensus 560 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r-~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~ 636 (830)
.+|..++..+.+.+.++.|+.+|....+.-.+ +...|.....+-.+ .++.+.|.++|+.. .+..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~--~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRC--TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS---THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46788889999999999999999999743222 34556666666444 56666699999987 345678899999999
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCc---chHHHHHHHHhhhcCHHHHHHHHHHHHhC
Q 047408 637 CRIHHEVKLAEKVAEHVFELEPDNT---GYYVLLANVYAEAEKWEEVKKLREKISRR 690 (830)
Q Consensus 637 ~~~~g~~~~a~~~~~~~~~l~p~~~---~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 690 (830)
+...|+.+.++.++++++..-|.+. ..|....+.-.+.|+++.+.++.+.+.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998766654 57888889999999999999999888763
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.09 E-value=1.7 Score=45.81 Aligned_cols=108 Identities=15% Similarity=0.175 Sum_probs=87.8
Q ss_pred HHHHHHhhcCCChHHHHHHHhhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcch
Q 047408 306 NTLLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLE 385 (830)
Q Consensus 306 ~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~ 385 (830)
+.-|.-+...|....|.++-.+..-||-.-|-..|.+|+..++|++-.++... +-.++-|-.++.+|...|+..
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 44566667789999999999999999999999999999999999987665432 234588999999999999998
Q ss_pred hhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcC
Q 047408 386 IGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQM 429 (830)
Q Consensus 386 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m 429 (830)
+|..+... ..+..-+.+|.++|++.+|.+.--+.
T Consensus 255 eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 255 EASKYIPK----------IPDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHHh----------CChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 88877765 22356789999999999998775444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.32 Score=49.27 Aligned_cols=54 Identities=15% Similarity=0.118 Sum_probs=44.8
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCCc---chHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 635 CGCRIHHEVKLAEKVAEHVFELEPDNT---GYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 635 ~~~~~~g~~~~a~~~~~~~~~l~p~~~---~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
.-|.+.|.+.-|..-++.+++--|+.+ .+...|.+.|...|.-++|..+.+...
T Consensus 183 ~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 183 EYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 347788999999999999998888754 467788999999999999999876554
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.76 E-value=1.3 Score=47.28 Aligned_cols=160 Identities=16% Similarity=0.143 Sum_probs=104.2
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCCCC---Chhh----HHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 047408 498 AIVDMYVKCGVLVLARSLFDMIPAK---DLIS----WTIMIAGYGM---HGFGCDAIATFNDMRQAGIEPDEVSFISVLY 567 (830)
Q Consensus 498 ~Li~~y~k~g~~~~A~~~f~~m~~~---d~~~----~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~ 567 (830)
.|+-.|-...+++.-.++++.++.. ++.. ---..-++-+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444688889999999999988743 2221 1123345556 7999999999999776666777777766554
Q ss_pred HHH---------ccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHH----HHHH---HhC-----CCCCC
Q 047408 568 ACS---------HSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEA----YRFI---EMM-----PVAPD 626 (830)
Q Consensus 568 a~~---------~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA----~~~~---~~m-----~~~p~ 626 (830)
.+- .....++|.+.|... +.+.|+..+--.++-++..+|...+. .++- ... ...+.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 432 123477788777653 46666654433445555556643322 2222 111 12343
Q ss_pred HHHH--HHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 047408 627 ATIW--GSLLCGCRIHHEVKLAEKVAEHVFELEPDN 660 (830)
Q Consensus 627 ~~~~--~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~ 660 (830)
..-| .+++.++...||.+.|.+++++++.+.|+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 4444 689999999999999999999999998875
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.75 E-value=2.1 Score=48.82 Aligned_cols=125 Identities=17% Similarity=0.168 Sum_probs=65.9
Q ss_pred HHHHHHHhhcCCChHHHHHHHhhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhcc---
Q 047408 305 NNTLLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACD--- 381 (830)
Q Consensus 305 ~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~--- 381 (830)
+-.+|+.+.-.|+.++|-.+.-.|-..+..-|.-.+.-+...++......+ +....-+.+...|-.+|..+...
T Consensus 395 ~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~~~~~ 471 (846)
T KOG2066|consen 395 GKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLASDVK 471 (846)
T ss_pred HHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHHHHHH
Confidence 355666666677777777777777666666666666666666655443222 11111112223333344333330
Q ss_pred ----------Ccchhhhh----HHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCc
Q 047408 382 ----------GLLEIGKD----VHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDI 434 (830)
Q Consensus 382 ----------~~~~~a~~----~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~ 434 (830)
+++-.+.. +..+..+. .-+..+.-.|+..|...+++.+|..++-...++++
T Consensus 472 ~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 472 GFLELIKEWPGHLYSVLTIISATEPQIKQN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred HHHHHHHhCChhhhhhhHHHhhcchHHHhh--ccchhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 00000000 01111111 11223444599999999999999999888777654
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.16 Score=47.00 Aligned_cols=114 Identities=13% Similarity=0.142 Sum_probs=71.5
Q ss_pred HHccCCHHHHHHHHHHhHhhcCCCC--CcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047408 569 CSHSGLVDEGWRFFNMMRYECNIEP--KLEHYACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLA 646 (830)
Q Consensus 569 ~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a 646 (830)
....|+.+.+.+.+..+..-|.=.+ +... ...+....+.++++- ..+...++..+...|+++.|
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~----~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY----LDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH----HHHHHHHHHHHHHTT-HHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH----HHHHHHHHHHHHhccCHHHH
Confidence 3455666677776666654432211 1111 122223333333321 23456677778899999999
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHH-----hCCCcCCC
Q 047408 647 EKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKIS-----RRGLKKNP 696 (830)
Q Consensus 647 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~-----~~g~~~~~ 696 (830)
...+++++..+|-+...|..+..+|...|+..+|.++++.++ +-|+.|.|
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 999999999999999999999999999999999999988775 34665543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=95.61 E-value=3.5 Score=42.95 Aligned_cols=94 Identities=10% Similarity=0.097 Sum_probs=51.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-----hh-HHHHHHHHHHccCCHHHHHHHHHHhHhhc-CCCCC--cchH
Q 047408 528 TIMIAGYGMHGFGCDAIATFNDMRQAGIEPD-----EV-SFISVLYACSHSGLVDEGWRFFNMMRYEC-NIEPK--LEHY 598 (830)
Q Consensus 528 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-----~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~p~--~~~y 598 (830)
..+...+.+.|++++|+++|++....-...+ .. .|...+-.+...|++..|.+.|+...... ++..+ ....
T Consensus 159 ~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~ 238 (282)
T PF14938_consen 159 LKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFL 238 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHH
Confidence 3456677888888888888888776432221 11 23333445566788888888888765221 22222 1223
Q ss_pred HHHHHHHHh--cCCHHHHHHHHHhC
Q 047408 599 ACMVDLLSR--TGNLSEAYRFIEMM 621 (830)
Q Consensus 599 ~~lv~~l~r--~g~~~eA~~~~~~m 621 (830)
..|++++-. ...+++|..-|+++
T Consensus 239 ~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 239 EDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHhCCHHHHHHHHHHHccc
Confidence 344555432 34566666666665
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.091 Score=45.70 Aligned_cols=90 Identities=19% Similarity=0.187 Sum_probs=73.8
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc----chHHHHHHHHhhhcC
Q 047408 603 DLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNT----GYYVLLANVYAEAEK 676 (830)
Q Consensus 603 ~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~----~~~~~l~~~y~~~g~ 676 (830)
-++...|++++|++.|.+. -+-| .+..||.-..+++..|+.++|..-+++++++.-+.. ..|+.-+-+|-..|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3577889999999988876 3334 678899999999999999999999999999864432 358888999999999
Q ss_pred HHHHHHHHHHHHhCCC
Q 047408 677 WEEVKKLREKISRRGL 692 (830)
Q Consensus 677 ~~~A~~~~~~m~~~g~ 692 (830)
-++|..-|+...+-|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999999888776553
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.16 Score=51.93 Aligned_cols=61 Identities=16% Similarity=0.157 Sum_probs=33.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 047408 601 MVDLLSRTGNLSEAYRFIEMM----PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNT 661 (830)
Q Consensus 601 lv~~l~r~g~~~eA~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~ 661 (830)
+..+|...|++++|...|+.+ |..| ....|-.+...+...|+.+.|...++++++..|++.
T Consensus 186 LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 186 LGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 334444444444444444443 2111 123344445556677788888888888888777754
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.7 Score=50.00 Aligned_cols=173 Identities=14% Similarity=0.131 Sum_probs=106.8
Q ss_pred CCHHHHHHHhhhCCCCCh---hhH--HHHHHHHHhc-----CChHHHHHHHHHHH-HcCCCCChhHHHHHHHHHHc----
Q 047408 507 GVLVLARSLFDMIPAKDL---ISW--TIMIAGYGMH-----GFGCDAIATFNDMR-QAGIEPDEVSFISVLYACSH---- 571 (830)
Q Consensus 507 g~~~~A~~~f~~m~~~d~---~~~--~~li~~~~~~-----g~~~~A~~l~~~m~-~~g~~Pd~~t~~~ll~a~~~---- 571 (830)
..+..++. -...+..+. ..| ..++.|.... -..+.|+.+|.+.. .+.+.|+...-.+.+.-|.-
T Consensus 232 ~~~~~~E~-~~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~ 310 (458)
T PRK11906 232 QTVHKPER-SVRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLAL 310 (458)
T ss_pred hhhhhhhh-hhcCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHH
Confidence 33444444 223334455 567 6666665542 23567888999988 23377876643333333321
Q ss_pred ------cCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 047408 572 ------SGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPD-ATIWGSLLCGCRIHHE 642 (830)
Q Consensus 572 ------~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~ 642 (830)
.....+|.+.-+... .+.| |......+..+++-.|+++.|...|++. .+.|| +.+|-.....+...|+
T Consensus 311 ~g~~~~~~~~~~a~~~A~rAv---eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~ 387 (458)
T PRK11906 311 HGKSELELAAQKALELLDYVS---DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEK 387 (458)
T ss_pred hcCCCchHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCC
Confidence 223445666555554 4455 4556666777777778888888888887 56676 4566666666777888
Q ss_pred HHHHHHHHHHHhccCCCCcchHH--HHHHHHhhhcCHHHHHHHH
Q 047408 643 VKLAEKVAEHVFELEPDNTGYYV--LLANVYAEAEKWEEVKKLR 684 (830)
Q Consensus 643 ~~~a~~~~~~~~~l~p~~~~~~~--~l~~~y~~~g~~~~A~~~~ 684 (830)
.++|...++++++++|....+-+ ...++|+..+ .++|.+++
T Consensus 388 ~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 388 IEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred HHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence 88888888888888887654433 3444566544 56666654
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.73 Score=45.44 Aligned_cols=186 Identities=13% Similarity=-0.012 Sum_probs=118.0
Q ss_pred HHHHHHHHH-hCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCC--CChhh--------HHHHHHHHHhcCChHHHHHH
Q 047408 478 REIHGYILR-HGISADRNVANAIVDMYVKCGVLVLARSLFDMIPA--KDLIS--------WTIMIAGYGMHGFGCDAIAT 546 (830)
Q Consensus 478 ~~i~~~~~~-~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d~~~--------~~~li~~~~~~g~~~~A~~l 546 (830)
+.+|..+.+ .|. -+++|+..|.-..-+++-...|+.-.. ..+.. -+.++..+.-+|.+.-.+.+
T Consensus 125 R~lhAe~~~~lgn-----pqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~ 199 (366)
T KOG2796|consen 125 RILHAELQQYLGN-----PQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDA 199 (366)
T ss_pred HHHHHHHHHhcCC-----cHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHH
Confidence 455666554 232 356777777766666666666654332 23333 35677777778888889999
Q ss_pred HHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHH-----HHHHHHHhcCCHHHHHHHHHhC
Q 047408 547 FNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYA-----CMVDLLSRTGNLSEAYRFIEMM 621 (830)
Q Consensus 547 ~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~-----~lv~~l~r~g~~~eA~~~~~~m 621 (830)
+++.++..-+-+.+-...|.+.-.+.|+++.|..+|+...+..+. .+....+ .+...|.-+.++.+|...+.+.
T Consensus 200 ~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~k-L~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i 278 (366)
T KOG2796|consen 200 YHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQK-LDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEI 278 (366)
T ss_pred HHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhh-hhccchhHHHHhhhhhheecccchHHHHHHHhhc
Confidence 999998655556666777778888999999999999976644222 2222233 3334455667788888888777
Q ss_pred CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 047408 622 PV-AP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLAN 669 (830)
Q Consensus 622 ~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 669 (830)
+. .| |++.-|+-.-...-.|+...|.+..+.+.+..|....+-..+.|
T Consensus 279 ~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~n 328 (366)
T KOG2796|consen 279 LRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFN 328 (366)
T ss_pred cccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHH
Confidence 43 22 33333332222344578888888888888888876554433333
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.38 E-value=1.6 Score=48.74 Aligned_cols=19 Identities=21% Similarity=0.497 Sum_probs=13.6
Q ss_pred cCChHHHHHHHhcCCCCCc
Q 047408 416 CGSMADAESVFNQMPVKDI 434 (830)
Q Consensus 416 ~g~~~~A~~~f~~m~~~~~ 434 (830)
-|++++|.+++-+|..+|.
T Consensus 747 ~g~feeaek~yld~drrDL 765 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDL 765 (1189)
T ss_pred hcchhHhhhhhhccchhhh
Confidence 3777777777777776664
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.97 Score=44.62 Aligned_cols=144 Identities=15% Similarity=0.080 Sum_probs=98.0
Q ss_pred HHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHH
Q 047408 371 ITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAM 450 (830)
Q Consensus 371 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m 450 (830)
...++......+.+.....++..+++...+.++.....|..+-.+.|+.+.|...|++..+.+-
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~---------------- 243 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ---------------- 243 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh----------------
Confidence 3445555555566666667777777776677888888899999999999999998886643211
Q ss_pred HhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCC---CChhhH
Q 047408 451 LQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPA---KDLISW 527 (830)
Q Consensus 451 ~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~ 527 (830)
+.|.. ..+..+..+....|.-.+++.+|...|++++. .|++.-
T Consensus 244 ----kL~~~------------------------------q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~ 289 (366)
T KOG2796|consen 244 ----KLDGL------------------------------QGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVAN 289 (366)
T ss_pred ----hhhcc------------------------------chhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhh
Confidence 11111 22223333344456667888889999988764 456667
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHH
Q 047408 528 TIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVL 566 (830)
Q Consensus 528 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll 566 (830)
|.-.-+..-.|+..+|++..+.|++ ..|...+-.+++
T Consensus 290 NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~es~~ 326 (366)
T KOG2796|consen 290 NNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHESVL 326 (366)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhhhHH
Confidence 7666666677999999999999998 567766655444
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.1 Score=46.52 Aligned_cols=52 Identities=15% Similarity=0.356 Sum_probs=37.2
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcC
Q 047408 590 NIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM----PVAPDATIWGSLLCGCRIHH 641 (830)
Q Consensus 590 ~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~~~~~~~ll~~~~~~g 641 (830)
.+.|+.....+++.+|+..|++..|+++++.. +++-+..+|..|+.=+...-
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 55677777788888888888888888777664 55556778888876654433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.19 Score=52.37 Aligned_cols=127 Identities=13% Similarity=0.039 Sum_probs=80.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHH---hHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-------CC-CCCHHH
Q 047408 562 FISVLYACSHSGLVDEGWRFFNM---MRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-------PV-APDATI 629 (830)
Q Consensus 562 ~~~ll~a~~~~g~~~~a~~~~~~---m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-------~~-~p~~~~ 629 (830)
|-.|.+.|.-.|+++.|+..++. +.++||-... ...++.+.+.+.-.|+++.|.+.++.. +- .-.+.+
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 44555555556777777776653 2334443332 345677777788888888888877654 11 112345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcc----C--CCCcchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 630 WGSLLCGCRIHHEVKLAEKVAEHVFEL----E--PDNTGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 630 ~~~ll~~~~~~g~~~~a~~~~~~~~~l----~--p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
.-+|..+|....+++.|+....+-+.+ + .....++..|++.|...|.-+.|..+.+.-.
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 557777777777888888777655432 2 1234567788888888888888877655543
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.24 E-value=6.9 Score=44.12 Aligned_cols=256 Identities=13% Similarity=0.154 Sum_probs=125.1
Q ss_pred HHHHhhcCCChHHHHHHHhhcCCC-----CeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccC
Q 047408 308 LLDMYSKCGDLDGAIRVFEKMGER-----SVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDG 382 (830)
Q Consensus 308 Li~~y~k~g~~~~A~~~f~~m~~~-----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~ 382 (830)
-|.++.+.|++-...++++.-... -...|+.+...++....+++|.+.|..-... ...+.++.+..
T Consensus 766 Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~ecly~le 836 (1189)
T KOG2041|consen 766 AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIECLYRLE 836 (1189)
T ss_pred hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHHHHHHHHH
Confidence 456666667776666666543221 1235777777777777777777776543210 11233333333
Q ss_pred cchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccc
Q 047408 383 LLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMA 462 (830)
Q Consensus 383 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~ 462 (830)
++++-+.+- ..++.|....-.+.+|+...|.-++|.+.|-+-..+.
T Consensus 837 ~f~~LE~la-----~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk----------------------------- 882 (1189)
T KOG2041|consen 837 LFGELEVLA-----RTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK----------------------------- 882 (1189)
T ss_pred hhhhHHHHH-----HhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----------------------------
Confidence 333322222 2245566677778888888898888888776554332
Q ss_pred cchhhhcchhhHHHHHHHHHHHHH-----------hCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCCh---hhHH
Q 047408 463 CILPACASLAALERGREIHGYILR-----------HGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDL---ISWT 528 (830)
Q Consensus 463 ~ll~a~~~~~~~~~a~~i~~~~~~-----------~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~---~~~~ 528 (830)
..+.+|-.+..+.+|.++-....- ..+-.+..+ .--|.++.|.|+.-+|-+++.+|.++.. +.|-
T Consensus 883 aAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~-~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~l 961 (1189)
T KOG2041|consen 883 AAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANH-MEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYL 961 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcch-HHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHH
Confidence 245667777776666554332100 000000001 1125667777776666666666542211 1111
Q ss_pred HHHHHH----HhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHH
Q 047408 529 IMIAGY----GMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDL 604 (830)
Q Consensus 529 ~li~~~----~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~ 604 (830)
-+=..| .-..+..++++-.++....|...|... +..+|...++-++.+..-. | ....|+-.|..-
T Consensus 962 r~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr--g--AEAyHFmilAQr 1030 (1189)
T KOG2041|consen 962 RLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR--G--AEAYHFMILAQR 1030 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh--h--HHHHHHHHHHHH
Confidence 110000 111223334444444444443332221 1223333444444332211 1 123455566666
Q ss_pred HHhcCCHHHHHHHH
Q 047408 605 LSRTGNLSEAYRFI 618 (830)
Q Consensus 605 l~r~g~~~eA~~~~ 618 (830)
-.+.|+.+.|++.-
T Consensus 1031 ql~eg~v~~Al~Ta 1044 (1189)
T KOG2041|consen 1031 QLFEGRVKDALQTA 1044 (1189)
T ss_pred HHHhchHHHHHHHH
Confidence 67788888887653
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.026 Score=45.64 Aligned_cols=61 Identities=16% Similarity=0.135 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcc----CCC---CcchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 628 TIWGSLLCGCRIHHEVKLAEKVAEHVFEL----EPD---NTGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 628 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~l----~p~---~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
.+++.+...+...|++++|+..+++++++ .++ -+..+..++.+|...|++++|.+.+++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45666777777777777777777777643 222 24467888899999999999988877653
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.16 E-value=1.3 Score=49.18 Aligned_cols=200 Identities=14% Similarity=0.120 Sum_probs=102.3
Q ss_pred hHHHHHHHHhcCCChHHHHHHHH--HHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCCCCeehHHHHHHHHHhc
Q 047408 269 TMVTVLSGCANCGALMFGRAVHA--FALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYARE 346 (830)
Q Consensus 269 t~~~ll~a~~~~~~~~~~~~l~~--~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~ 346 (830)
.|...=+||.+..++..-+-+.+ .+.+.|-.|+... +.+.++-.|.+.+|-++|.+ +
T Consensus 600 ~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~ 658 (1081)
T KOG1538|consen 600 DFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------S 658 (1081)
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------c
Confidence 34455556666666655554433 3455666566544 33445556778888777654 5
Q ss_pred CChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHH
Q 047408 347 GVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVF 426 (830)
Q Consensus 347 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f 426 (830)
|.-..|+++|.+|+-- -...-+...|.-++-+.+...-.+. ..++.-=.+-..|+...|+.++|..+.
T Consensus 659 G~enRAlEmyTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~ 726 (1081)
T KOG1538|consen 659 GHENRALEMYTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEIC 726 (1081)
T ss_pred CchhhHHHHHHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhh
Confidence 6666777777666421 1222333444444444443332211 111111123456667778877777654
Q ss_pred hcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhc
Q 047408 427 NQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKC 506 (830)
Q Consensus 427 ~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~ 506 (830)
-+- -|--|+ +++-+++. +.+..++..+-.-+-....+..|-+||..+-.. .+++++....
T Consensus 727 ~d~------gW~d~l--idI~rkld---~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~ 786 (1081)
T KOG1538|consen 727 GDH------GWVDML--IDIARKLD---KAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVET 786 (1081)
T ss_pred hcc------cHHHHH--HHHHhhcc---hhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeec
Confidence 321 121111 11111110 223333333333334445556666666655332 3577788888
Q ss_pred CCHHHHHHHhhhCCC
Q 047408 507 GVLVLARSLFDMIPA 521 (830)
Q Consensus 507 g~~~~A~~~f~~m~~ 521 (830)
+++++|..+-++.++
T Consensus 787 ~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 787 QRWDEAFALAEKHPE 801 (1081)
T ss_pred ccchHhHhhhhhCcc
Confidence 888888888887774
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.04 E-value=6 Score=42.33 Aligned_cols=82 Identities=9% Similarity=0.112 Sum_probs=57.4
Q ss_pred CCCCh-hhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCccchHHHHHHHHHhCCChHHHHHHHhcCCCC--CcchHHH
Q 047408 92 SKIDT-KTYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNKIDNG--KVFIWNL 168 (830)
Q Consensus 92 ~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~--~~~~~~~ 168 (830)
.+|+. .+|-.|++-+...+..++.+.++.++... .|--+.+|...++.-....++.....+|.+.... ++..|..
T Consensus 37 dNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p--fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldLW~l 114 (660)
T COG5107 37 DNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP--FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDLWML 114 (660)
T ss_pred cCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC--CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhHHHH
Confidence 34433 48999999999999999999999988653 2222445666666555567888888888876544 5667877
Q ss_pred HHHHHHh
Q 047408 169 LMHEYSK 175 (830)
Q Consensus 169 li~~~~~ 175 (830)
-+.---+
T Consensus 115 Yl~YIRr 121 (660)
T COG5107 115 YLEYIRR 121 (660)
T ss_pred HHHHHHh
Confidence 7764444
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.031 Score=45.24 Aligned_cols=60 Identities=17% Similarity=0.175 Sum_probs=34.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 047408 597 HYACMVDLLSRTGNLSEAYRFIEMM-------P-VAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFEL 656 (830)
Q Consensus 597 ~y~~lv~~l~r~g~~~eA~~~~~~m-------~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l 656 (830)
.|+.+...|.+.|++++|++.+++. + ..|+ ..++..+...+...|++++|+..+++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3445555555555555555555443 1 1122 345666667777777777777777776543
|
... |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.36 Score=52.12 Aligned_cols=126 Identities=15% Similarity=0.133 Sum_probs=92.6
Q ss_pred HHHHHHHHcc-----CCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHh---------cCCHHHHHHHHHhC-CCCC-
Q 047408 563 ISVLYACSHS-----GLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSR---------TGNLSEAYRFIEMM-PVAP- 625 (830)
Q Consensus 563 ~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r---------~g~~~eA~~~~~~m-~~~p- 625 (830)
..++.+..+. ...+.|..+|.+......+.|+ ...|..+...+.. .....+|.++.++. .+.|
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 4455554442 2456788899988866678886 5556555443321 22345666666655 4555
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 626 DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 626 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
|+.....+..+....++++.|...++++..++|+.+..+...+++..-+|+.++|.+..++..
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 567777777777778889999999999999999999999999999999999999999887643
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=94.74 E-value=2.6 Score=42.70 Aligned_cols=57 Identities=16% Similarity=0.227 Sum_probs=30.3
Q ss_pred HHHHHHhhcCCChHHHHHHHhhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 047408 306 NTLLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFRGMVRE 362 (830)
Q Consensus 306 ~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 362 (830)
..+|+-|-...-..+|..-+..+..+=...--.+..-|.+.|.+..|+.-|+.+.+.
T Consensus 148 ~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~ 204 (243)
T PRK10866 148 SKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRD 204 (243)
T ss_pred HHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHH
Confidence 344555555555555555444432211111123445577777777777777777664
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.74 E-value=10 Score=43.44 Aligned_cols=333 Identities=15% Similarity=0.063 Sum_probs=165.0
Q ss_pred HCCCCCChhhHHH-----HHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCC---hHHHHHHHhhcCC-
Q 047408 260 NLGFNVDLATMVT-----VLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGD---LDGAIRVFEKMGE- 330 (830)
Q Consensus 260 ~~g~~pd~~t~~~-----ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~---~~~A~~~f~~m~~- 330 (830)
.-|+..+..-|.. +++-+...+.+..+.|+-.++--..... ..++.....-+.+..+ -+-+.++=+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 3466555554443 3445555566666666655553222122 4555666666666532 2334444444544
Q ss_pred -CCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCC----CCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCc---
Q 047408 331 -RSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGI----EPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSS--- 402 (830)
Q Consensus 331 -~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~--- 402 (830)
..-++|..+.+---+.|+.+-|..+++.=...+- -.+..-+...|.-+...|+.+...+++-++...-...+
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~ 583 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFM 583 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 4667888888877888888888877653211110 01222344455556666776666665555443210000
Q ss_pred ----hhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHH--HHHHh-CC-CCCccccccchhhhcchhhH
Q 047408 403 ----LYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLF--VAMLQ-NF-EPDGVTMACILPACASLAAL 474 (830)
Q Consensus 403 ----~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f--~~m~~-~~-~pd~~t~~~ll~a~~~~~~~ 474 (830)
...-+.|-.-|+|..+-..-...|+.-...- ++..| +.... +- .+-.......-++|++....
T Consensus 584 ~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~---------~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~ 654 (829)
T KOG2280|consen 584 TLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQ---------ALASFHLQASYAAETIEGRIPALKTAANAFAKSKEK 654 (829)
T ss_pred HHHhchhhhHHHHHHHHhhchhhhhhhhhcccchh---------hhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhh
Confidence 0000111111222111111111111110000 00000 00000 00 01111122233344433332
Q ss_pred HHHHHHHH----------HH-HHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHH
Q 047408 475 ERGREIHG----------YI-LRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDA 543 (830)
Q Consensus 475 ~~a~~i~~----------~~-~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A 543 (830)
..+.+..+ .+ .+.|......+.+--+.-+..-|+-.+|.++-.+..-||--.|---+.+++..+++++-
T Consensus 655 s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeL 734 (829)
T KOG2280|consen 655 SFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEEL 734 (829)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHH
Confidence 21111111 11 12232222223333445556678888888888888878877777778888888888876
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 047408 544 IATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFI 618 (830)
Q Consensus 544 ~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~ 618 (830)
.++-+.+. + .+-|.-...+|.+.|..+||.+|+.... | +.-.+.+|.+.|++.||.++-
T Consensus 735 ekfAkskk-----s-PIGy~PFVe~c~~~~n~~EA~KYiprv~---~-------l~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 735 EKFAKSKK-----S-PIGYLPFVEACLKQGNKDEAKKYIPRVG---G-------LQEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHHhccC-----C-CCCchhHHHHHHhcccHHHHhhhhhccC---C-------hHHHHHHHHHhccHHHHHHHH
Confidence 66655443 2 4556667788888888888888876542 1 125677888888888887654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=94.52 E-value=2.4 Score=41.59 Aligned_cols=163 Identities=17% Similarity=0.133 Sum_probs=88.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh----HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 047408 528 TIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV----SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVD 603 (830)
Q Consensus 528 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~ 603 (830)
-.....+.+.|++.+|++.|+++... -|+.. ....+..++...|++++|...|+.....|.-.|... +.-...
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~-~A~Y~~ 85 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDR--YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD-YALYML 85 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH-HHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh-hHHHHH
Confidence 34455666778888888888888774 23321 345566777778888888888887776665444321 111111
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcc-----------------hHHH
Q 047408 604 LLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTG-----------------YYVL 666 (830)
Q Consensus 604 ~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~-----------------~~~~ 666 (830)
+++........ + ...+..+....|...++.+++.-|+++- .-..
T Consensus 86 g~~~~~~~~~~---~----------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ 146 (203)
T PF13525_consen 86 GLSYYKQIPGI---L----------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELY 146 (203)
T ss_dssp HHHHHHHHHHH---H-----------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCccc---h----------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 11100000000 0 0012223344555566666666666533 2345
Q ss_pred HHHHHhhhcCHHHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCcCCCChhHHHHHHHHHHHHHHHcC
Q 047408 667 LANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIEIKGKVNIFVAGGSSHPHAKKIESLLKRLRLEMKREG 738 (830)
Q Consensus 667 l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~~~swi~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~~~~~g 738 (830)
++..|.+.|+|..|..-++.+.+ .-|++......|..+.+...+.|
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~--------------------------~yp~t~~~~~al~~l~~~y~~l~ 192 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIE--------------------------NYPDTPAAEEALARLAEAYYKLG 192 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHH--------------------------HSTTSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccHHHHHHHHHHHHH--------------------------HCCCCchHHHHHHHHHHHHHHhC
Confidence 68889999999999988887764 24666666666666665555555
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.47 E-value=1.9 Score=42.83 Aligned_cols=138 Identities=17% Similarity=0.170 Sum_probs=77.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHH
Q 047408 527 WTIMIAGYGMHGFGCDAIATFNDMRQAGIEPD----EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMV 602 (830)
Q Consensus 527 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 602 (830)
|-.=+..-.+.|++++|.+.|+.+..+ .|. ..+...++.|.-+.+++++|....++....|+-.|++. |.--+
T Consensus 37 LY~~g~~~L~~gn~~~A~~~fe~l~~~--~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~Yl 113 (254)
T COG4105 37 LYNEGLTELQKGNYEEAIKYFEALDSR--HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYL 113 (254)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHH
Confidence 333344456777777777777777753 222 23456666677777777777777777776666666643 22233
Q ss_pred HHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC-----------------cchH
Q 047408 603 DLLSRTGNLSEAYRFIEMMP-VAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDN-----------------TGYY 664 (830)
Q Consensus 603 ~~l~r~g~~~eA~~~~~~m~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~-----------------~~~~ 664 (830)
.++. .|...+ ..-|. .-...|...++.+++--|++ ++.-
T Consensus 114 kgLs----------~~~~i~~~~rDq-------------~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~E 170 (254)
T COG4105 114 KGLS----------YFFQIDDVTRDQ-------------SAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHE 170 (254)
T ss_pred HHHH----------HhccCCccccCH-------------HHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 3332 111110 00010 01122333334444444443 2234
Q ss_pred HHHHHHHhhhcCHHHHHHHHHHHHhC
Q 047408 665 VLLANVYAEAEKWEEVKKLREKISRR 690 (830)
Q Consensus 665 ~~l~~~y~~~g~~~~A~~~~~~m~~~ 690 (830)
..+++.|.+.|.|.-|..-++.|.+.
T Consensus 171 m~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 171 MAIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 56788999999999999888888763
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.39 Score=52.99 Aligned_cols=131 Identities=18% Similarity=0.188 Sum_probs=83.7
Q ss_pred HHhcCChHHHHHHHH--HHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCH
Q 047408 534 YGMHGFGCDAIATFN--DMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNL 611 (830)
Q Consensus 534 ~~~~g~~~~A~~l~~--~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~ 611 (830)
...+|++++++++.. ++.. .++ ..-...++.-+.+.|..+.|+++-..-..+ -++..+.|++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~-~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r-------------FeLAl~lg~L 334 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLP-NIP--KDQGQSIARFLEKKGYPELALQFVTDPDHR-------------FELALQLGNL 334 (443)
T ss_dssp HHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH-------------HHHHHHCT-H
T ss_pred HHHcCChhhhhhhhhhhhhcc-cCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHHH-------------hHHHHhcCCH
Confidence 345677777666654 1111 122 223566667777888888888765443322 3566788999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCC
Q 047408 612 SEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRG 691 (830)
Q Consensus 612 ~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g 691 (830)
+.|.+..++.+ +...|..|......+|+++.|+.++++. .-+..|.-+|...|+-+.-.++-+....+|
T Consensus 335 ~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 99998877653 7789999999999999999999999884 447788888899998877777766555544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.13 Score=45.79 Aligned_cols=96 Identities=13% Similarity=0.159 Sum_probs=64.7
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcc
Q 047408 493 RNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHS 572 (830)
Q Consensus 493 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~ 572 (830)
..++.++|.++++.|+++....+.+..=.-| +.+-...+. --......|+..+..+++.+++..
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~-------~~~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n 65 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGID-------VNGKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN 65 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCC-------CCCccccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence 3455666677777777777666665432111 111111111 112345778999999999999999
Q ss_pred CCHHHHHHHHHHhHhhcCCCCCcchHHHHHHH
Q 047408 573 GLVDEGWRFFNMMRYECNIEPKLEHYACMVDL 604 (830)
Q Consensus 573 g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~ 604 (830)
|++..|.++.+...+.|+++-+...|..|..-
T Consensus 66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999999999999999987777778777653
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.11 E-value=14 Score=42.42 Aligned_cols=328 Identities=11% Similarity=0.096 Sum_probs=181.8
Q ss_pred hhHHHHHHHhcCChHHHHHHHHHhhcCCC-ChhhHHHHHHHHhccCCh---hHHHHHHHHHHHhCCCCCccchHHHHHHH
Q 047408 66 YNAEIGRFCEVGNLEKAMEVLYSSEKSKI-DTKTYCSILQLCADLKSL---EDGKKVHSIICESGIVIDDGVLGSKLVFM 141 (830)
Q Consensus 66 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~~li~~ 141 (830)
-..+|.-+...+.+..|+.+-.-+...-. ....|....+-..+..+. +.+..+-.++... .. + ...+....+-
T Consensus 440 ~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~~-~-~iSy~~iA~~ 516 (829)
T KOG2280|consen 440 EEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-LT-P-GISYAAIARR 516 (829)
T ss_pred hhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-CC-C-ceeHHHHHHH
Confidence 44567778888888888887766543211 123455555545444332 2222232222221 12 2 4556666666
Q ss_pred HHhCCChHHHHHHHhcCCCC--------CcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCC
Q 047408 142 FVTCGDLKEGRRVFNKIDNG--------KVFIWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGN 213 (830)
Q Consensus 142 y~~~g~~~~A~~~f~~m~~~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 213 (830)
--.+|+.+-|+++.+.=+.. +..-+..-+.-..+.|+.+-...++-.|...- +...|...|.
T Consensus 517 Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l~~~l~------- 586 (829)
T KOG2280|consen 517 AYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSLFMTLR------- 586 (829)
T ss_pred HHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHHHHHHH-------
Confidence 66889999999988754432 22234555666777788777777766665421 1111111111
Q ss_pred CCCHHHHHHHHhhCCC-CCcchHHHHHHHHHhCCChhHHHHHHHH-H-HH-CCCCCChhhHHHHHHHHhcCCChHH-HHH
Q 047408 214 SRRVKDAHKLFDELSD-RDVVSWNCMISGYIANGVAEKGLEVFKE-M-LN-LGFNVDLATMVTVLSGCANCGALMF-GRA 288 (830)
Q Consensus 214 ~~~~~~A~~lf~~m~~-~~~~~~n~li~~~~~~g~~~~A~~l~~~-m-~~-~g~~pd~~t~~~ll~a~~~~~~~~~-~~~ 288 (830)
....|..++.+.-+ .|.. .+-+.| +.++-.+++.-|.. - .. .-+.+-.......-++|++...... ++.
T Consensus 587 --~~p~a~~lY~~~~r~~~~~---~l~d~y-~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka 660 (829)
T KOG2280|consen 587 --NQPLALSLYRQFMRHQDRA---TLYDFY-NQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKA 660 (829)
T ss_pred --hchhhhHHHHHHHHhhchh---hhhhhh-hcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHH
Confidence 12233333332211 1110 111112 22222222222211 0 00 0012222223334445554443211 111
Q ss_pred HHHHH----------HHhCCC-CCchHHHHHHHHhhcCCChHHHHHHHhhcCCCCeehHHHHHHHHHhcCChhHHHHHHH
Q 047408 289 VHAFA----------LKACFS-KEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFR 357 (830)
Q Consensus 289 l~~~~----------~~~g~~-~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~ 357 (830)
+-+.+ .+.|.. .|..+ +--+.-+..-|+..+|.++-.+..-||-..|--=+.+++..+++++-+++-+
T Consensus 661 ~ed~~kLl~lQ~~Le~q~~~~f~dlSl-~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAk 739 (829)
T KOG2280|consen 661 LEDQMKLLKLQRTLEDQFGGSFVDLSL-HDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAK 739 (829)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCcH-HHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHh
Confidence 11111 122322 23333 4445556678999999999999999999999999999999999998777655
Q ss_pred HHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhc
Q 047408 358 GMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQ 428 (830)
Q Consensus 358 ~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 428 (830)
.+. .+.-|.....+|.+.|+.++|+.....+-. +.-.+.+|.++|++.+|.++--+
T Consensus 740 skk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 740 SKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred ccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC---------hHHHHHHHHHhccHHHHHHHHHH
Confidence 543 257788899999999999999988765421 11578999999999999877544
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.07 E-value=3.1 Score=36.66 Aligned_cols=139 Identities=14% Similarity=0.108 Sum_probs=75.2
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHH
Q 047408 536 MHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAY 615 (830)
Q Consensus 536 ~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~ 615 (830)
-.|..++..++..+...+. +..-++-++--...+-+-+-..+.++++-+-+.+. .+|++....
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrVi 76 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRVI 76 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHHH
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHHH
Confidence 3466677777777766531 12222222222222222233334444443333222 344444444
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCc
Q 047408 616 RFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLK 693 (830)
Q Consensus 616 ~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~ 693 (830)
.-+-.+. .+.....--|......|.-|.-..++..+++-+..+|...+-+++.|.+.|...++.+++++.=++|++
T Consensus 77 ~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 77 ECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 4444432 223334445677788899999999999988766667889999999999999999999999999888875
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.06 E-value=6.4 Score=38.45 Aligned_cols=195 Identities=17% Similarity=0.127 Sum_probs=140.7
Q ss_pred ccccchhhhcchhhHHHHHHHHHHHHHh-CCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCC--CC-hhhHHHHHH-HH
Q 047408 460 TMACILPACASLAALERGREIHGYILRH-GISADRNVANAIVDMYVKCGVLVLARSLFDMIPA--KD-LISWTIMIA-GY 534 (830)
Q Consensus 460 t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d-~~~~~~li~-~~ 534 (830)
.+..........+.+..+...+...... ........+..+...+...+....+.+.+..... ++ ...+..... .+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGAL 140 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHH
Confidence 3444445555666677776666666553 3345566777778888888999999999987664 22 233333444 78
Q ss_pred HhcCChHHHHHHHHHHHHcCCCC----ChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC--cchHHHHHHHHHhc
Q 047408 535 GMHGFGCDAIATFNDMRQAGIEP----DEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK--LEHYACMVDLLSRT 608 (830)
Q Consensus 535 ~~~g~~~~A~~l~~~m~~~g~~P----d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~lv~~l~r~ 608 (830)
...|+.++|...|.+... ..| ....+......+...+..+++...+..... ..|+ ...+..+...+...
T Consensus 141 ~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 141 YELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK---LNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh---hCcccchHHHHHhhHHHHHc
Confidence 899999999999999965 444 223444444556788999999999998873 3333 57788888999999
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 047408 609 GNLSEAYRFIEMM-PVAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPD 659 (830)
Q Consensus 609 g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 659 (830)
|.+++|...+... ...|+ ...+..+...+...++.+.+...+++.++..|.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999999998887 44554 455666666666777899999999999999987
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.33 Score=48.25 Aligned_cols=100 Identities=14% Similarity=0.137 Sum_probs=81.1
Q ss_pred HHHHhhhCC--CCChhhHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccC-----------
Q 047408 512 ARSLFDMIP--AKDLISWTIMIAGYGMH-----GFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSG----------- 573 (830)
Q Consensus 512 A~~~f~~m~--~~d~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g----------- 573 (830)
-+..|...+ ++|-.+|-+++..+..+ ++.+=....++.|.+-|+.-|..+|..||+.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 355676666 77888999999888755 566767777889999999999999999998876543
Q ss_pred -----CHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHH
Q 047408 574 -----LVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLS 612 (830)
Q Consensus 574 -----~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~ 612 (830)
.-+=|+.++++|. .+|+.||.++-..|+++++|.|..-
T Consensus 133 ~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred hhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhccccccH
Confidence 2245788999997 6799999999999999999998653
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=93.87 E-value=1.8 Score=46.86 Aligned_cols=62 Identities=10% Similarity=-0.052 Sum_probs=37.3
Q ss_pred CchhHHhHHHHHHHhcCCHHHHHHHhhhCC--CCCh----hhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047408 491 ADRNVANAIVDMYVKCGVLVLARSLFDMIP--AKDL----ISWTIMIAGYGMHGFGCDAIATFNDMRQ 552 (830)
Q Consensus 491 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~--~~d~----~~~~~li~~~~~~g~~~~A~~l~~~m~~ 552 (830)
.+...++.+...|.+.|++++|...|++.. .|+. .+|..+..+|+..|+.++|++.+++.++
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345566666666666666666666666533 2322 2466666666666666666666666665
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=93.85 E-value=3.2 Score=48.32 Aligned_cols=243 Identities=16% Similarity=0.157 Sum_probs=101.3
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhc-CCCchhhHHHHHHHHHhc---
Q 047408 341 AGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKEND-MQSSLYVSNALMDMYAKC--- 416 (830)
Q Consensus 341 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~Li~~y~k~--- 416 (830)
..+.-.|+++.|++.+-+ ..+...|.+.+...|..+.-..-.+... ..++... -.+...-+..||..|.+.
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 445567888999888776 3345567777777666554322222111 2221111 011124567888888864
Q ss_pred CChHHHHHHHhcCCCCCchhH-HHHHHHH-------HHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhC
Q 047408 417 GSMADAESVFNQMPVKDIVSW-NTMIGAL-------DLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHG 488 (830)
Q Consensus 417 g~~~~A~~~f~~m~~~~~~~~-n~~i~al-------~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 488 (830)
.+..+|...|--+...+...- +....++ +-|..+...-.+|..-...++.-..++ .+
T Consensus 341 td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~L---------------i~ 405 (613)
T PF04097_consen 341 TDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSL---------------IK 405 (613)
T ss_dssp T-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGG---------------GT
T ss_pred cCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccc---------------cC
Confidence 577888888766643321111 1111111 111111111133332222222210000 01
Q ss_pred CCCch-h---HHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CChhHHH
Q 047408 489 ISADR-N---VANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIE-PDEVSFI 563 (830)
Q Consensus 489 ~~~~~-~---~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-Pd~~t~~ 563 (830)
+..+. . +......-....|++++|..+|+-. |+++.|++++.+.+..-+. |+.
T Consensus 406 ~~~~~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La------------------~~~d~vl~lln~~Ls~~l~~~~~---- 463 (613)
T PF04097_consen 406 FDDDEDFLREIIEQAAREAEERGRFEDAILLYHLA------------------EEYDKVLSLLNRLLSQVLSQPSS---- 463 (613)
T ss_dssp -SSSSHHHHHHHHHHHHHHHHCT-HHHHHHHHHHT------------------T-HHHHHHHHHHHHHHHHHCSST----
T ss_pred CCCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH------------------hhHHHHHHHHHHHHHHHHcCccc----
Confidence 11111 1 1122334466778999998887654 5778888887776642110 110
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHhhcC----CCC-CcchHHHHHHH-----HHhcCCHHHHHHHHHhCCCCC
Q 047408 564 SVLYACSHSGLVDEGWRFFNMMRYECN----IEP-KLEHYACMVDL-----LSRTGNLSEAYRFIEMMPVAP 625 (830)
Q Consensus 564 ~ll~a~~~~g~~~~a~~~~~~m~~~~~----~~p-~~~~y~~lv~~-----l~r~g~~~eA~~~~~~m~~~p 625 (830)
.....-...+....|.++.+....... +.+ ...++..|.++ +...|++++|++.++++++-|
T Consensus 464 ~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 464 SSLSDSERERLIELAKEILERYKSNPHISSKVSRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp SSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT-S-
T ss_pred cccccchhhhHHHHHHHHHHHHHhCcchHhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence 000000011223334443333221100 111 13344444443 568999999999999998877
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.75 Score=41.52 Aligned_cols=58 Identities=17% Similarity=0.213 Sum_probs=43.3
Q ss_pred HHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcc
Q 047408 605 LSRTGNLSEAYRFIEMM----PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTG 662 (830)
Q Consensus 605 l~r~g~~~eA~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~ 662 (830)
..+.|++++|.+.|+.+ |..| ...+-..|+.++...+++++|...+++.+++.|.++.
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 34677888887777776 4433 2345566788888899999999999999999888764
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.62 Score=46.36 Aligned_cols=116 Identities=10% Similarity=0.099 Sum_probs=82.8
Q ss_pred hHHHHHHHhcCC--CCCcchHHHHHHHHHh-----CCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHH
Q 047408 148 LKEGRRVFNKID--NGKVFIWNLLMHEYSK-----TGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRRVKDA 220 (830)
Q Consensus 148 ~~~A~~~f~~m~--~~~~~~~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~A 220 (830)
+-..++.|...+ ++|-.+|-+++.-+.. ++..+--...++.|.+.|+.-|..+|+.||..+-+-.-
T Consensus 50 Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf------- 122 (406)
T KOG3941|consen 50 LVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF------- 122 (406)
T ss_pred ccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc-------
Confidence 344566777776 6777888888877764 35667677888999999999999999999998754321
Q ss_pred HHHHhhCCCCCcchHHHHHHHHHhC-CChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCC
Q 047408 221 HKLFDELSDRDVVSWNCMISGYIAN-GVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGA 282 (830)
Q Consensus 221 ~~lf~~m~~~~~~~~n~li~~~~~~-g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~ 282 (830)
..-|..-..+..- .+-+-+++++++|...|+.||..+-..+++++.+.+-
T Consensus 123 ------------iP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 123 ------------IPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred ------------ccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 1111111222211 1234589999999999999999999999998877663
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=93.68 E-value=4.7 Score=39.59 Aligned_cols=166 Identities=13% Similarity=0.042 Sum_probs=101.6
Q ss_pred HHHHHHHhcCCHHHHHHHhhhCCC--CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh--HHHHHHHHH
Q 047408 498 AIVDMYVKCGVLVLARSLFDMIPA--KD----LISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV--SFISVLYAC 569 (830)
Q Consensus 498 ~Li~~y~k~g~~~~A~~~f~~m~~--~d----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~--t~~~ll~a~ 569 (830)
.....+...|++++|.+.|+.+.. |+ ....-.++.++-+.|++++|...|++.++. -|+.. -+...+.+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHH
Confidence 345567789999999999998862 21 235566788999999999999999999884 55544 233333333
Q ss_pred HccCCH-------------HHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047408 570 SHSGLV-------------DEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCG 636 (830)
Q Consensus 570 ~~~g~~-------------~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~ 636 (830)
+..... .+|... +..++.-|-.+...++|.+.+..+...--..- -.+..-
T Consensus 88 ~~~~~~~~~~~~~~D~~~~~~A~~~----------------~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e-~~ia~~ 150 (203)
T PF13525_consen 88 SYYKQIPGILRSDRDQTSTRKAIEE----------------FEELIKRYPNSEYAEEAKKRLAELRNRLAEHE-LYIARF 150 (203)
T ss_dssp HHHHHHHHHH-TT---HHHHHHHHH----------------HHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHhCccchhcccChHHHHHHHHH----------------HHHHHHHCcCchHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 322211 122333 33444445555555666555544310000000 123445
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCcc---hHHHHHHHHhhhcCHHHHHH
Q 047408 637 CRIHHEVKLAEKVAEHVFELEPDNTG---YYVLLANVYAEAEKWEEVKK 682 (830)
Q Consensus 637 ~~~~g~~~~a~~~~~~~~~l~p~~~~---~~~~l~~~y~~~g~~~~A~~ 682 (830)
|.+.|.+.-|..-++.+++.-|+.+. ....|+..|.+.|.-+.|..
T Consensus 151 Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 151 YYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 78899999999999999999998654 45778888999999885443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.56 E-value=2.8 Score=38.27 Aligned_cols=68 Identities=15% Similarity=0.278 Sum_probs=42.5
Q ss_pred ChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhc-CCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047408 558 DEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRT-GNLSEAYRFIEMMPVAPDATIWGSLLCG 636 (830)
Q Consensus 558 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~-g~~~eA~~~~~~m~~~p~~~~~~~ll~~ 636 (830)
+......++..|.+.+.++++..++..+. -|...++.+... ++.+.|.+++++- .+...|..++..
T Consensus 68 ~~yd~~~~~~~c~~~~l~~~~~~l~~k~~----------~~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~ 134 (140)
T smart00299 68 NHYDIEKVGKLCEKAKLYEEAVELYKKDG----------NFKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKA 134 (140)
T ss_pred ccCCHHHHHHHHHHcCcHHHHHHHHHhhc----------CHHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHH
Confidence 44455567777777777777777776652 123344444444 7778888877763 255677777766
Q ss_pred HH
Q 047408 637 CR 638 (830)
Q Consensus 637 ~~ 638 (830)
|.
T Consensus 135 ~l 136 (140)
T smart00299 135 LL 136 (140)
T ss_pred HH
Confidence 54
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.11 Score=33.92 Aligned_cols=33 Identities=21% Similarity=0.182 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 047408 628 TIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDN 660 (830)
Q Consensus 628 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~ 660 (830)
.+|..+...+...|++++|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 467888888899999999999999999998873
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.74 Score=46.75 Aligned_cols=65 Identities=6% Similarity=0.025 Sum_probs=35.9
Q ss_pred CCCCcchhHHHHHHHhcCChHHHHHHHHHhhcCCC-ChhhH---HHHHHHHhccCChhHHHHHHHHHHH
Q 047408 60 VCKTKNYNAEIGRFCEVGNLEKAMEVLYSSEKSKI-DTKTY---CSILQLCADLKSLEDGKKVHSIICE 124 (830)
Q Consensus 60 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~ 124 (830)
|.|...|-.|-..|.+.|+++.|...|.+..+..+ +|..+ ...+-.-....+-.++..++.++++
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~ 221 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA 221 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence 45666676666777777777777777766655433 33322 2222222233445555666666555
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.42 E-value=1.3 Score=48.15 Aligned_cols=217 Identities=16% Similarity=0.093 Sum_probs=106.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHH---
Q 047408 537 HGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSE--- 613 (830)
Q Consensus 537 ~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~e--- 613 (830)
..+...-+++-++.++ +.||-.+-..+| |-..+.-+.++.++|++..+- | . ..|++....+.
T Consensus 181 ERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E-------~~lg~s~~~~~~g~ 245 (539)
T PF04184_consen 181 ERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----E-------ASLGKSQFLQHHGH 245 (539)
T ss_pred cCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----H-------Hhhchhhhhhcccc
Confidence 3445555555566555 567665533333 333445567777777765421 0 0 00111111110
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC--CcchHHHHHHHHhhhcCHHHHHHHHHHHHhCC
Q 047408 614 AYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPD--NTGYYVLLANVYAEAEKWEEVKKLREKISRRG 691 (830)
Q Consensus 614 A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~--~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g 691 (830)
..+.+..-...|-..+=..|...+++.|+.++|.+.++.+++..|. +-.++..|++.|-..+++.|+..++.+-.+-.
T Consensus 246 ~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~ 325 (539)
T PF04184_consen 246 FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDIS 325 (539)
T ss_pred hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcccc
Confidence 1111111112222333345556667778888888888888766664 34567777788888888888888777665544
Q ss_pred CcCCCceeEEEECCEEEEEEeCCcCCCC-------hhHHHHHHHHHHHHHHHcCccCCCCccccccchhhhHHHh-hhhH
Q 047408 692 LKKNPGCSWIEIKGKVNIFVAGGSSHPH-------AKKIESLLKRLRLEMKREGYFPKTRYALINADEMEKEVAL-CGHS 763 (830)
Q Consensus 692 ~~~~~~~swi~~~~~~~~f~~~~~~~p~-------~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~l-~~hs 763 (830)
..|....+|...- ...-.++|+..|+ +......++-+.+.++..-++|+--.-.-.+--. -|.++ .+-|
T Consensus 326 lpkSAti~YTaAL--LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilP-PehilkrGDS 402 (539)
T PF04184_consen 326 LPKSATICYTAAL--LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILP-PEHILKRGDS 402 (539)
T ss_pred CCchHHHHHHHHH--HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCC-hHHhcCCCcH
Confidence 4444433331100 0000122332222 1223345666777777777777532111111100 12222 3457
Q ss_pred HHHHHHHH
Q 047408 764 EKLAMAFG 771 (830)
Q Consensus 764 e~la~a~~ 771 (830)
|-+|-||-
T Consensus 403 EAiaYAf~ 410 (539)
T PF04184_consen 403 EAIAYAFF 410 (539)
T ss_pred HHHHHHHH
Confidence 77777665
|
The molecular function of this protein is uncertain. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.17 Score=33.00 Aligned_cols=33 Identities=24% Similarity=0.239 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC
Q 047408 628 TIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDN 660 (830)
Q Consensus 628 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~ 660 (830)
.+|..+...+...|++++|+..++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356777788888888888888888888888875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.21 E-value=1.6 Score=45.81 Aligned_cols=131 Identities=14% Similarity=0.065 Sum_probs=95.4
Q ss_pred CCccccccchhhhcchhhHHHHHHHHHHHHH----hCCC-CchhHHhHHHHHHHhcCCHHHHHHHhhhC-------CCCC
Q 047408 456 PDGVTMACILPACASLAALERGREIHGYILR----HGIS-ADRNVANAIVDMYVKCGVLVLARSLFDMI-------PAKD 523 (830)
Q Consensus 456 pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~----~g~~-~~~~~~~~Li~~y~k~g~~~~A~~~f~~m-------~~~d 523 (830)
.-...|..+-+.+.-+|+++.+...|..-+. .|-. .....+..|.+.|.-.|+++.|.+-+... ..+.
T Consensus 193 aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~ 272 (639)
T KOG1130|consen 193 AQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRT 272 (639)
T ss_pred hhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchh
Confidence 3456788888888889999999999886432 3322 13456677888899999999999988753 2343
Q ss_pred h--hhHHHHHHHHHhcCChHHHHHHHHHHHHc----C-CCCChhHHHHHHHHHHccCCHHHHHHHHHHhH
Q 047408 524 L--ISWTIMIAGYGMHGFGCDAIATFNDMRQA----G-IEPDEVSFISVLYACSHSGLVDEGWRFFNMMR 586 (830)
Q Consensus 524 ~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g-~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 586 (830)
+ .+.-++.+.|.-...+++|+..+.+-+.- + ..-....+.+|..++...|..++|+.+.+.-.
T Consensus 273 vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 273 VEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3 35667888888888999999998875431 1 12234478899999999999999988776543
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.03 E-value=18 Score=40.47 Aligned_cols=182 Identities=14% Similarity=0.098 Sum_probs=127.1
Q ss_pred chhHHhHHHHHHHhcCCHHHHHHHhhhCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 047408 492 DRNVANAIVDMYVKCGVLVLARSLFDMIPAK---DLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYA 568 (830)
Q Consensus 492 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a 568 (830)
+..+|+.-++.-.+.|+.+...-+|++..-| =..-|--.+.-....|+.+-|-.++....+--++-...+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 5678888888889999999999999987644 2234555554444458888888777776654333333332222233
Q ss_pred HHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHH---HHHHhC-CCCCCHHHHHHHHH-----HHH
Q 047408 569 CSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAY---RFIEMM-PVAPDATIWGSLLC-----GCR 638 (830)
Q Consensus 569 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~---~~~~~m-~~~p~~~~~~~ll~-----~~~ 638 (830)
+...|+.+.|..+++...+++ |+ ++.-.--+....|.|+++.+. +++... +.+-+..+.+.+.- -+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 678899999999999998764 65 334444567788999999988 665554 33333333333322 245
Q ss_pred hcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcC
Q 047408 639 IHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEK 676 (830)
Q Consensus 639 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 676 (830)
..++.+.|..++.++.+..|++...|..+.++....+.
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 67899999999999999999999999999888776663
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.02 E-value=2.7 Score=44.48 Aligned_cols=94 Identities=16% Similarity=0.116 Sum_probs=71.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhh
Q 047408 596 EHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAE 673 (830)
Q Consensus 596 ~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 673 (830)
..+..+.-.|.+.+.+.+|++.-++. ..+| |.-..--=..+|...|+++.|+..++++++++|+|-.+..-|+.+--+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34556666777888888888776664 4444 444444456788899999999999999999999999998888888877
Q ss_pred hcCHHHH-HHHHHHHHh
Q 047408 674 AEKWEEV-KKLREKISR 689 (830)
Q Consensus 674 ~g~~~~A-~~~~~~m~~ 689 (830)
..+..+. .+++..|-.
T Consensus 338 ~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 7776665 677777754
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=92.72 E-value=4.8 Score=36.69 Aligned_cols=87 Identities=9% Similarity=0.052 Sum_probs=46.1
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHhhCCCCCcchHHHHHHHHHh
Q 047408 165 IWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRRVKDAHKLFDELSDRDVVSWNCMISGYIA 244 (830)
Q Consensus 165 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~A~~lf~~m~~~~~~~~n~li~~~~~ 244 (830)
.-..+|..+.+.+.+.....+++.+...+. .+....+.++..+++.. .......+.. ..+......+++.|.+
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~----~~~ll~~l~~--~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD----PQKEIERLDN--KSNHYDIEKVGKLCEK 81 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC----HHHHHHHHHh--ccccCCHHHHHHHHHH
Confidence 345566666666777777777777766652 45556666666666543 2233333331 1223333334444455
Q ss_pred CCChhHHHHHHHHH
Q 047408 245 NGVAEKGLEVFKEM 258 (830)
Q Consensus 245 ~g~~~~A~~l~~~m 258 (830)
.+.++++.-++.++
T Consensus 82 ~~l~~~~~~l~~k~ 95 (140)
T smart00299 82 AKLYEEAVELYKKD 95 (140)
T ss_pred cCcHHHHHHHHHhh
Confidence 55555555554443
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.73 Score=43.51 Aligned_cols=88 Identities=19% Similarity=0.185 Sum_probs=69.9
Q ss_pred HHHHHhcCCHHHHHHHHHhC----CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhh
Q 047408 602 VDLLSRTGNLSEAYRFIEMM----PVAP---DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEA 674 (830)
Q Consensus 602 v~~l~r~g~~~eA~~~~~~m----~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 674 (830)
.+-+.+.|.+++|..-|... |-.| ..+.|..-..+..+.+..+.|+....+++++.|....+...-+.+|.+.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 34466788888888877765 2222 1244555556677889999999999999999999888888889999999
Q ss_pred cCHHHHHHHHHHHHh
Q 047408 675 EKWEEVKKLREKISR 689 (830)
Q Consensus 675 g~~~~A~~~~~~m~~ 689 (830)
.++++|.+-++++.+
T Consensus 182 ek~eealeDyKki~E 196 (271)
T KOG4234|consen 182 EKYEEALEDYKKILE 196 (271)
T ss_pred hhHHHHHHHHHHHHH
Confidence 999999999998876
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=92.34 E-value=4.2 Score=45.67 Aligned_cols=159 Identities=14% Similarity=0.088 Sum_probs=93.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChh-----HHHHHHHH-HHc---cCCHHHHHHHHHHhHhhcCCCCCcch
Q 047408 528 TIMIAGYGMHGFGCDAIATFNDMRQAG-IEPDEV-----SFISVLYA-CSH---SGLVDEGWRFFNMMRYECNIEPKLEH 597 (830)
Q Consensus 528 ~~li~~~~~~g~~~~A~~l~~~m~~~g-~~Pd~~-----t~~~ll~a-~~~---~g~~~~a~~~~~~m~~~~~~~p~~~~ 597 (830)
..+++...-.|+-+.+++++.+-.+.+ +.-..- +|..++.. +.. ...++.+.++++.+.++| |+...
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~l 268 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSAL 268 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcHH
Confidence 344455555566666666665544321 111100 12222222 222 446677777777776554 55444
Q ss_pred HHH-HHHHHHhcCCHHHHHHHHHhCCC-C-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchH-HHHHH
Q 047408 598 YAC-MVDLLSRTGNLSEAYRFIEMMPV-A-----PDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYY-VLLAN 669 (830)
Q Consensus 598 y~~-lv~~l~r~g~~~eA~~~~~~m~~-~-----p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~-~~l~~ 669 (830)
|.. -..++...|++++|++.|++.-. + -....+--+...+....++++|...+.++.+.+.-+...| ...+-
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 433 24556667888888888876411 1 1123333455566778899999999999988777655554 56677
Q ss_pred HHhhhcCH-------HHHHHHHHHHHh
Q 047408 670 VYAEAEKW-------EEVKKLREKISR 689 (830)
Q Consensus 670 ~y~~~g~~-------~~A~~~~~~m~~ 689 (830)
.|...|+- ++|.+++++...
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 78888888 777777776654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.77 Score=46.03 Aligned_cols=89 Identities=17% Similarity=0.240 Sum_probs=53.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---cchHHHH
Q 047408 598 YACMVDLLSRTGNLSEAYRFIEMM-------PVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDN---TGYYVLL 667 (830)
Q Consensus 598 y~~lv~~l~r~g~~~eA~~~~~~m-------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~---~~~~~~l 667 (830)
|+.-+++| +.|++.+|.+.|... +..||+.-| |+.++...|+++.|...|..+.+-.|++ |..+.-|
T Consensus 145 Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 44444333 455566666555443 234555555 4566666777777777777666655544 3456667
Q ss_pred HHHHhhhcCHHHHHHHHHHHHh
Q 047408 668 ANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 668 ~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
+.+..+.|+-++|..+++...+
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHH
Confidence 7777777777777777666543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=92.30 E-value=0.96 Score=41.68 Aligned_cols=65 Identities=23% Similarity=0.271 Sum_probs=29.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHh----HhhcCCCCCcc
Q 047408 530 MIAGYGMHGFGCDAIATFNDMRQAGIEP-DEVSFISVLYACSHSGLVDEGWRFFNMM----RYECNIEPKLE 596 (830)
Q Consensus 530 li~~~~~~g~~~~A~~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m----~~~~~~~p~~~ 596 (830)
++..+...|++++|+.+.+++... .| |...+..++.++...|+..+|.++|+.+ .++.|+.|+..
T Consensus 68 l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 68 LAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 444445555555555555555552 33 2334555555555555555555555443 22445555543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.38 E-value=4.6 Score=41.06 Aligned_cols=114 Identities=13% Similarity=0.125 Sum_probs=79.0
Q ss_pred HHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH------HHHHHHhc
Q 047408 568 ACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGS------LLCGCRIH 640 (830)
Q Consensus 568 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~------ll~~~~~~ 640 (830)
.....|+..++...|...... .| +.+.-..|...|...|+.++|..++..+|.+-...-|.. ++.--...
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 445677788888888776532 23 356667788888999999999999999876554444433 22222222
Q ss_pred CCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 641 HEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 641 g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
++.. .+++-+..+|+|...-..|+..|...|+.++|.+.+=.+.
T Consensus 220 ~~~~----~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 220 PEIQ----DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred CCHH----HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2222 2344556799999999999999999999999988765554
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=91.13 E-value=5.6 Score=43.42 Aligned_cols=101 Identities=13% Similarity=0.172 Sum_probs=69.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCH--HHHHHHHHHHH
Q 047408 563 ISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMP-V-APDA--TIWGSLLCGCR 638 (830)
Q Consensus 563 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~-~p~~--~~~~~ll~~~~ 638 (830)
..+...+.+.|..+||.+.|..|.+++...-.......|+..|...+.+.|+..++.+-. + -|.. ..|++.|-..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 345566678899999999999988665332234455678889999999999999998874 1 2433 45665554444
Q ss_pred hcCC---------------HHHHHHHHHHHhccCCCCcch
Q 047408 639 IHHE---------------VKLAEKVAEHVFELEPDNTGY 663 (830)
Q Consensus 639 ~~g~---------------~~~a~~~~~~~~~l~p~~~~~ 663 (830)
.-++ -..|.+++.++++.+|..+.+
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 4443 123567888999998886643
|
The molecular function of this protein is uncertain. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=91.10 E-value=2 Score=44.38 Aligned_cols=193 Identities=11% Similarity=0.057 Sum_probs=107.9
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHhh-------hCCCC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCChh-H
Q 047408 493 RNVANAIVDMYVKCGVLVLARSLFD-------MIPAK--DLISWTIMIAGYGMHGFGCDAIATFNDMRQ-AGIEPDEV-S 561 (830)
Q Consensus 493 ~~~~~~Li~~y~k~g~~~~A~~~f~-------~m~~~--d~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~Pd~~-t 561 (830)
..++..+.++.++.|.++++...-- +.... -..+|-.+..++.+.-++.+++.+-+.-.. .|..|... -
T Consensus 43 f~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~g 122 (518)
T KOG1941|consen 43 FRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGG 122 (518)
T ss_pred HHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccc
Confidence 3455566677777776666543211 11111 123455555566555556666555443332 23444222 2
Q ss_pred HHHH--HHHHHccCCHHHHHHHHHHhHhhcCC--CC--CcchHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCHH
Q 047408 562 FISV--LYACSHSGLVDEGWRFFNMMRYECNI--EP--KLEHYACMVDLLSRTGNLSEAYRFIEMM-------PVAPDAT 628 (830)
Q Consensus 562 ~~~l--l~a~~~~g~~~~a~~~~~~m~~~~~~--~p--~~~~y~~lv~~l~r~g~~~eA~~~~~~m-------~~~p~~~ 628 (830)
+..+ -.|....+.++++++.|+...+-..- .| ....|..|..+|++..+.++|.-+..+. .++.=..
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ 202 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL 202 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence 3333 34444455678888888876421111 12 2457888888888888888776555443 3222122
Q ss_pred HHH-----HHHHHHHhcCCHHHHHHHHHHHhcc--CCCCcc----hHHHHHHHHhhhcCHHHHHHHHH
Q 047408 629 IWG-----SLLCGCRIHHEVKLAEKVAEHVFEL--EPDNTG----YYVLLANVYAEAEKWEEVKKLRE 685 (830)
Q Consensus 629 ~~~-----~ll~~~~~~g~~~~a~~~~~~~~~l--~p~~~~----~~~~l~~~y~~~g~~~~A~~~~~ 685 (830)
-|. -+.-+++..|.+..|.+..+++.++ ...|-. ....++++|-..|+.|.|..-++
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe 270 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYE 270 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHH
Confidence 222 3345678888888888888777553 233333 34578888888888777765544
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=91.03 E-value=22 Score=38.12 Aligned_cols=37 Identities=11% Similarity=0.163 Sum_probs=28.2
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHH
Q 047408 402 SLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWN 438 (830)
Q Consensus 402 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n 438 (830)
|-..+.+++.++.-.|+.++|.+..+.|...+...|-
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 4445667888888889999999888888776666664
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=90.67 E-value=1.5 Score=40.47 Aligned_cols=54 Identities=13% Similarity=0.171 Sum_probs=39.2
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCC
Q 047408 638 RIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRG 691 (830)
Q Consensus 638 ~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g 691 (830)
..+++.+.++.++.-+.-+.|+.+..-..-++++...|+|++|.++++.+.+.+
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 455677777777777777777777777777777777777777777777765543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.62 E-value=5.5 Score=36.04 Aligned_cols=19 Identities=16% Similarity=0.177 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhccCCCCc
Q 047408 643 VKLAEKVAEHVFELEPDNT 661 (830)
Q Consensus 643 ~~~a~~~~~~~~~l~p~~~ 661 (830)
...|...++++++.-|++.
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHHHCcCCh
Confidence 5677777888888888764
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.57 E-value=23 Score=36.64 Aligned_cols=236 Identities=11% Similarity=0.013 Sum_probs=107.4
Q ss_pred CchHHHHHHHHhhcCCChHHHHHHHhhcCCCCeehHHHHHHHHHhcCCh----hHHHHHHHHHHHcCCCCCcchHHHHHH
Q 047408 301 EISFNNTLLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVF----DGAIRLFRGMVREGIEPDVYAITSILH 376 (830)
Q Consensus 301 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~----~~A~~l~~~m~~~g~~pd~~t~~~ll~ 376 (830)
|..+....+..+.+.|..+-...+..-...+|...-...+.++.+-|.. .+++.++..+... .||...-...+.
T Consensus 36 d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~ 113 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAIN 113 (280)
T ss_pred CHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHH
Confidence 3333344444444444332222222222334444444445555555543 3566666655332 344444444444
Q ss_pred HhhccCcch--hhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCC
Q 047408 377 ACACDGLLE--IGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNF 454 (830)
Q Consensus 377 a~~~~~~~~--~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~ 454 (830)
++...+.-. ............-..++..+.-..+.++++.|+.+ |...+-.+...
T Consensus 114 aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~-ai~~L~~~L~d---------------------- 170 (280)
T PRK09687 114 ATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEA-AIPLLINLLKD---------------------- 170 (280)
T ss_pred HHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHH-HHHHHHHHhcC----------------------
Confidence 444432211 11122222222222345566666777777777643 33333333221
Q ss_pred CCCccccccchhhhcchh-hHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHH
Q 047408 455 EPDGVTMACILPACASLA-ALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAG 533 (830)
Q Consensus 455 ~pd~~t~~~ll~a~~~~~-~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~ 533 (830)
+|...-...+.++.+.+ .-+.+...+..+. -.++..+-..-+.++++.|+.+-.-.+.+.+..++ ..-..+.+
T Consensus 171 -~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L---~D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~A 244 (280)
T PRK09687 171 -PNGDVRNWAAFALNSNKYDNPDIREAFVAML---QDKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEA 244 (280)
T ss_pred -CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHh---cCCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHH
Confidence 11112222222232221 0122233322222 34566667777777777777443333344444433 23356677
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Q 047408 534 YGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACS 570 (830)
Q Consensus 534 ~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~ 570 (830)
+...|.. +|+..+.++.+. .||...-...+.+|.
T Consensus 245 Lg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 245 AGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 7777774 577777777763 445555444444443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.87 E-value=2.8 Score=42.13 Aligned_cols=92 Identities=15% Similarity=0.152 Sum_probs=57.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh----HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHH
Q 047408 527 WTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV----SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACM 601 (830)
Q Consensus 527 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~l 601 (830)
|+.-+. +.+.|++.+|...|...++. -|+.. .+.=|..++...|++++|..+|..+.++|+-.|. ++.+--|
T Consensus 145 Y~~A~~-~~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALD-LYKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 444333 33456677777777777763 23322 2334566677777777777777777777666665 3666666
Q ss_pred HHHHHhcCCHHHHHHHHHhC
Q 047408 602 VDLLSRTGNLSEAYRFIEMM 621 (830)
Q Consensus 602 v~~l~r~g~~~eA~~~~~~m 621 (830)
...+++.|+.++|...+++.
T Consensus 222 g~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHH
Confidence 66666666666666666554
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=89.65 E-value=2.4 Score=47.53 Aligned_cols=140 Identities=21% Similarity=0.244 Sum_probs=96.9
Q ss_pred HHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCc-----chHHHHH-HHHH---hcCCHHHHHH
Q 047408 546 TFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKL-----EHYACMV-DLLS---RTGNLSEAYR 616 (830)
Q Consensus 546 l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~y~~lv-~~l~---r~g~~~eA~~ 616 (830)
+|+-|..- ++| .+..+++...-.|+-+.|++.+....+..++.-.. -.|..++ ..++ ....+++|.+
T Consensus 179 ~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~ 254 (468)
T PF10300_consen 179 LFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEE 254 (468)
T ss_pred HHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHH
Confidence 44444442 333 34566666677899999999988765443443321 1233333 2333 3668899999
Q ss_pred HHHhC-CCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHhccCCC----CcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 617 FIEMM-PVAPDATIWGSLLCG-CRIHHEVKLAEKVAEHVFELEPD----NTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 617 ~~~~m-~~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~l~p~----~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
+++.+ ..-|+...|.-.-+- ++..|++++|...++++++...+ ..-.+.-+++.|.-.++|++|.+.+..+.+
T Consensus 255 lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 255 LLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh
Confidence 99998 456888888655543 78899999999999988753322 223466789999999999999999999876
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=89.50 E-value=15 Score=44.41 Aligned_cols=23 Identities=13% Similarity=0.296 Sum_probs=10.5
Q ss_pred HHHHHHHHhcC--ChHHHHHHHhcC
Q 047408 407 NALMDMYAKCG--SMADAESVFNQM 429 (830)
Q Consensus 407 ~~Li~~y~k~g--~~~~A~~~f~~m 429 (830)
-.+|..|.+.+ .+++|.....+.
T Consensus 794 ~~ilTs~vk~~~~~ie~aL~kI~~l 818 (1265)
T KOG1920|consen 794 LFILTSYVKSNPPEIEEALQKIKEL 818 (1265)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34445555544 444444444433
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=89.46 E-value=2 Score=38.96 Aligned_cols=54 Identities=7% Similarity=0.065 Sum_probs=45.4
Q ss_pred hcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCC
Q 047408 639 IHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGL 692 (830)
Q Consensus 639 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~ 692 (830)
..++.++++.+++.+--+.|+.+..-..-++++...|+|+||.++++...+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 377888888888888888899888888889999999999999998887776553
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.27 E-value=20 Score=36.60 Aligned_cols=154 Identities=11% Similarity=0.034 Sum_probs=98.7
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCC
Q 047408 532 AGYGMHGFGCDAIATFNDMRQAGIEPDE-VSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGN 610 (830)
Q Consensus 532 ~~~~~~g~~~~A~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~ 610 (830)
......|+..+|..+|+..... .|+. ..-..+..++...|++++|..++..+-.+..- ........-+..+.++..
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~-~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQD-KAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchh-hHHHHHHHHHHHHHHHhc
Confidence 4556778888888888888874 3333 34556667788889999999888876432110 011112334667777777
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CCCCcchHHHHHHHHhhhcCHH-HHHHHHHH
Q 047408 611 LSEAYRFIEMMPVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFEL--EPDNTGYYVLLANVYAEAEKWE-EVKKLREK 686 (830)
Q Consensus 611 ~~eA~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l--~p~~~~~~~~l~~~y~~~g~~~-~A~~~~~~ 686 (830)
..+..++.++..-.| |...--.|...+...|+.+.|...+=.++.. .-++...--.|..++...|.-| -+.+.|++
T Consensus 219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRk 298 (304)
T COG3118 219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRK 298 (304)
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 777777777765566 4555556667788888888887766555543 3345666667777777777433 34455555
Q ss_pred HH
Q 047408 687 IS 688 (830)
Q Consensus 687 m~ 688 (830)
|-
T Consensus 299 L~ 300 (304)
T COG3118 299 LY 300 (304)
T ss_pred HH
Confidence 53
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=88.92 E-value=25 Score=37.70 Aligned_cols=150 Identities=11% Similarity=-0.066 Sum_probs=77.7
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---ChhHHHHHHHHHHccCCHHHHHHHHHHhHhh-cCCCCCcch
Q 047408 522 KDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEP---DEVSFISVLYACSHSGLVDEGWRFFNMMRYE-CNIEPKLEH 597 (830)
Q Consensus 522 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P---d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~~~~ 597 (830)
....+|..++..+.++|+++.|...+.++...+..+ +...+..-....-..|.-++|...++..... ..-..+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 345578888888888888888888888887643222 2223333344556677778888877766541 111101111
Q ss_pred HHHHHHHHHhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHh------cCCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 047408 598 YACMVDLLSRTGNLSEAYRF-IEMMPVAPDATIWGSLLCGCRI------HHEVKLAEKVAEHVFELEPDNTGYYVLLANV 670 (830)
Q Consensus 598 y~~lv~~l~r~g~~~eA~~~-~~~m~~~p~~~~~~~ll~~~~~------~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 670 (830)
...+...+.. ..+..... ......+.-..++..+..-+.. +++.+.+...++++.++.|+....+..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000 0000000001222222222333 3788899999999999999887777777666
Q ss_pred Hhh
Q 047408 671 YAE 673 (830)
Q Consensus 671 y~~ 673 (830)
+.+
T Consensus 302 ~~~ 304 (352)
T PF02259_consen 302 NDK 304 (352)
T ss_pred HHH
Confidence 653
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=88.83 E-value=9.1 Score=35.40 Aligned_cols=93 Identities=22% Similarity=0.198 Sum_probs=60.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcC
Q 047408 564 SVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMMP-VAPDATIWGSLLCGCRIHH 641 (830)
Q Consensus 564 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~-~~p~~~~~~~ll~~~~~~g 641 (830)
.+++.-.+.++.+++..++..+. -+.|. .++-.+-+..+.+.|+|.+|+.+++++. -.|....-.+|+..|....
T Consensus 15 e~~~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 15 EVLSVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence 33444556678888888888776 56675 3444455666788999999999999883 2344445567777775554
Q ss_pred CHHHHHHHHHHHhccCCC
Q 047408 642 EVKLAEKVAEHVFELEPD 659 (830)
Q Consensus 642 ~~~~a~~~~~~~~~l~p~ 659 (830)
.-..=...++.+++..|+
T Consensus 92 ~D~~Wr~~A~evle~~~d 109 (160)
T PF09613_consen 92 GDPSWRRYADEVLESGAD 109 (160)
T ss_pred CChHHHHHHHHHHhcCCC
Confidence 444444556677776664
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.61 E-value=2.3 Score=37.31 Aligned_cols=89 Identities=16% Similarity=0.124 Sum_probs=47.6
Q ss_pred HHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CC-CC-CH---HHHHHHHHHHHhc
Q 047408 568 ACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PV-AP-DA---TIWGSLLCGCRIH 640 (830)
Q Consensus 568 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~-~p-~~---~~~~~ll~~~~~~ 640 (830)
+.+..|+++.|++.|.... .+-| ....||.=..+|.-.|+.++|++=+++. .+ .| .. ..|---...|+..
T Consensus 52 alaE~g~Ld~AlE~F~qal---~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQAL---CLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHH---HhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 3445566666666665544 3333 3455666666666666666666555543 10 01 11 1222223346777
Q ss_pred CCHHHHHHHHHHHhccCCC
Q 047408 641 HEVKLAEKVAEHVFELEPD 659 (830)
Q Consensus 641 g~~~~a~~~~~~~~~l~p~ 659 (830)
|+.+.|+.-|+.+-++...
T Consensus 129 g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGSK 147 (175)
T ss_pred CchHHHHHhHHHHHHhCCH
Confidence 8888887777766655443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=88.39 E-value=70 Score=39.09 Aligned_cols=198 Identities=15% Similarity=0.195 Sum_probs=109.3
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhH
Q 047408 171 HEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRRVKDAHKLFDELSDRDVVSWNCMISGYIANGVAEK 250 (830)
Q Consensus 171 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~A~~lf~~m~~~~~~~~n~li~~~~~~g~~~~ 250 (830)
-+-..+.++.+-+-+++++.+....--.+..+..+. +.++|+.-+.++. ...|+-.++---++|.+.+
T Consensus 859 VAq~SqkDPkEyLP~L~el~~m~~~~rkF~ID~~L~---------ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~ 926 (1265)
T KOG1920|consen 859 VAQKSQKDPKEYLPFLNELKKMETLLRKFKIDDYLK---------RYEDALSHLSECG---ETYFPECKNYIKKHGLYDE 926 (1265)
T ss_pred HHHHhccChHHHHHHHHHHhhchhhhhheeHHHHHH---------HHHHHHHHHHHcC---ccccHHHHHHHHhcccchh
Confidence 344445666666666666553211011111111111 4566666555554 3345555666667778888
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCC
Q 047408 251 GLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGE 330 (830)
Q Consensus 251 A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~ 330 (830)
|+.++ +|+...+..+..+|+. ++.+.. -++--.-+|.++|+.++|.+
T Consensus 927 aL~ly--------~~~~e~~k~i~~~ya~------------hL~~~~------~~~~Aal~Ye~~GklekAl~------- 973 (1265)
T KOG1920|consen 927 ALALY--------KPDSEKQKVIYEAYAD------------HLREEL------MSDEAALMYERCGKLEKALK------- 973 (1265)
T ss_pred hhhee--------ccCHHHHHHHHHHHHH------------HHHHhc------cccHHHHHHHHhccHHHHHH-------
Confidence 87775 5777777666666542 111111 11233447888888888865
Q ss_pred CCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcch--HHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHH
Q 047408 331 RSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYA--ITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNA 408 (830)
Q Consensus 331 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t--~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 408 (830)
+|..+|++.+|+.+-.+|-.. -|... --.|..-+...+..-+|-++..+.... ..-
T Consensus 974 -----------a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~ 1031 (1265)
T KOG1920|consen 974 -----------AYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEE 1031 (1265)
T ss_pred -----------HHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHH
Confidence 455577888888887766321 12211 134445555666665555555443221 223
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCCch
Q 047408 409 LMDMYAKCGSMADAESVFNQMPVKDIV 435 (830)
Q Consensus 409 Li~~y~k~g~~~~A~~~f~~m~~~~~~ 435 (830)
-+..|++...+++|.++-..-...|.+
T Consensus 1032 av~ll~ka~~~~eAlrva~~~~~~d~i 1058 (1265)
T KOG1920|consen 1032 AVALLCKAKEWEEALRVASKAKRDDII 1058 (1265)
T ss_pred HHHHHhhHhHHHHHHHHHHhcccchHH
Confidence 456678888899999887766555543
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=88.27 E-value=34 Score=35.40 Aligned_cols=59 Identities=10% Similarity=0.010 Sum_probs=29.2
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHhhCCC--CC-cchHHHHHHHHHhCCChhHHHHHHHHHHHC
Q 047408 203 CVLKCLAVVGNSRRVKDAHKLFDELSD--RD-VVSWNCMISGYIANGVAEKGLEVFKEMLNL 261 (830)
Q Consensus 203 ~ll~~~~~~g~~~~~~~A~~lf~~m~~--~~-~~~~n~li~~~~~~g~~~~A~~l~~~m~~~ 261 (830)
.+..++...++.+..+.|..+.+.+.. +| ...+-.-+..+.+.++.+++.+.+.+|...
T Consensus 89 ~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 89 LLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 344444444444445555555544421 22 333333344444466666666666666654
|
It is also involved in sporulation []. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=88.13 E-value=0.66 Score=30.86 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=21.5
Q ss_pred hHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 663 YYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 663 ~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
+|..|+++|.+.|+|++|.++++...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36789999999999999999988743
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=88.12 E-value=0.67 Score=30.09 Aligned_cols=31 Identities=23% Similarity=0.128 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 047408 629 IWGSLLCGCRIHHEVKLAEKVAEHVFELEPD 659 (830)
Q Consensus 629 ~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 659 (830)
+|..+...+...|+.++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4666667777788888888888888877774
|
... |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=88.10 E-value=9.8 Score=39.68 Aligned_cols=129 Identities=14% Similarity=0.195 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHh--c----CCHHHHHHHhhhCCC-------CChhhHHHHHHHHHhcCC
Q 047408 473 ALERGREIHGYILRHGISADRNVANAIVDMYVK--C----GVLVLARSLFDMIPA-------KDLISWTIMIAGYGMHGF 539 (830)
Q Consensus 473 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k--~----g~~~~A~~~f~~m~~-------~d~~~~~~li~~~~~~g~ 539 (830)
.++....+++.+.+.|+..+..++-+-.-+... . -.+..|..+|+.|.+ ++-.++.+|+.. ..++
T Consensus 77 ~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 77 AFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 466777888888888888877666553333322 1 235678888888873 344566666554 2222
Q ss_pred ----hHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHcc-CC--HHHHHHHHHHhHhhcCCCCCcchHHHHHHH
Q 047408 540 ----GCDAIATFNDMRQAGIEPDEV-SFISVLYACSHS-GL--VDEGWRFFNMMRYECNIEPKLEHYACMVDL 604 (830)
Q Consensus 540 ----~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~-g~--~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~ 604 (830)
.+++...|+.+...|+..+.. .+.+-+-++... .. +..+.++++.+.+. |+++...||..++-+
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHHH
Confidence 467788889999888877655 444444443322 22 45788888888755 999999998876543
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.67 E-value=7.4 Score=40.05 Aligned_cols=159 Identities=11% Similarity=0.011 Sum_probs=106.7
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHH----HHHHhcCCH
Q 047408 536 MHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMV----DLLSRTGNL 611 (830)
Q Consensus 536 ~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv----~~l~r~g~~ 611 (830)
-+|+..+|-..++++++. .+.|...+.-.=.+|...|..+.-+..++.+.. .-.|+...|.-+= -.+..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 357788888888888874 555666777777889999998888888887763 3356665555443 345588999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC----CcchHHHHHHHHhhhcCHHHHHHHHH
Q 047408 612 SEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPD----NTGYYVLLANVYAEAEKWEEVKKLRE 685 (830)
Q Consensus 612 ~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~----~~~~~~~l~~~y~~~g~~~~A~~~~~ 685 (830)
++|++.-++. .+.| |.=.-.++.......|+..+|.+..++--..=.+ -+..|-..+-.|...+.++.|.+++.
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999888876 5555 3333345555567788888888877654322111 12345555666777788999999876
Q ss_pred HHHhCCCcCCCc
Q 047408 686 KISRRGLKKNPG 697 (830)
Q Consensus 686 ~m~~~g~~~~~~ 697 (830)
.=.-+.+.|+.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 544344555554
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.45 E-value=46 Score=35.97 Aligned_cols=80 Identities=14% Similarity=0.194 Sum_probs=60.8
Q ss_pred CCCchHHHHHHHHhhcCCChHHHHHHHhhcCCCCe---ehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHH
Q 047408 299 SKEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSV---VSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSIL 375 (830)
Q Consensus 299 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 375 (830)
+.|+..|-.||..|...|..++-++++++|..|-. ..|..-|++=....++.....+|.+-+...+..| .|..-|
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ld--LW~lYl 116 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLD--LWMLYL 116 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHh--HHHHHH
Confidence 56778888999999999999999999999988754 3788888888888888888888888877655433 344444
Q ss_pred HHhhc
Q 047408 376 HACAC 380 (830)
Q Consensus 376 ~a~~~ 380 (830)
.--.+
T Consensus 117 ~YIRr 121 (660)
T COG5107 117 EYIRR 121 (660)
T ss_pred HHHHh
Confidence 43333
|
|
| >KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.43 E-value=16 Score=41.79 Aligned_cols=154 Identities=18% Similarity=0.213 Sum_probs=98.3
Q ss_pred cccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcC
Q 047408 459 VTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHG 538 (830)
Q Consensus 459 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g 538 (830)
+.|.-.++---+-|+-++|..+.--+++..-+. -=+|||-||++-+ .|- +-+.|...+
T Consensus 244 f~YaFALNRRNr~GDRakAL~~~l~lve~eg~v-------apDm~Cl~GRIYK------DmF---------~~S~ytDa~ 301 (1226)
T KOG4279|consen 244 FHYAFALNRRNRPGDRAKALNTVLPLVEKEGPV-------APDMYCLCGRIYK------DMF---------IASNYTDAE 301 (1226)
T ss_pred EEeeehhcccCCCccHHHHHHHHHHHHHhcCCC-------CCceeeeechhhh------hhh---------hccCCcchh
Confidence 456666666677788888888766665532111 1257888887533 221 123455666
Q ss_pred ChHHHHHHHHHHHHcCCCCChhH---HHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHH
Q 047408 539 FGCDAIATFNDMRQAGIEPDEVS---FISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAY 615 (830)
Q Consensus 539 ~~~~A~~l~~~m~~~g~~Pd~~t---~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~ 615 (830)
..+.|++.|++..+ +.|+..+ +..||.|-.+. ++...+ |+ . .-..|-.+++|.|.++.-.
T Consensus 302 s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~~--Fens~E----lq-~--------IgmkLn~LlgrKG~leklq 364 (1226)
T KOG4279|consen 302 SLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGEH--FENSLE----LQ-Q--------IGMKLNSLLGRKGALEKLQ 364 (1226)
T ss_pred hHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhhh--ccchHH----HH-H--------HHHHHHHHhhccchHHHHH
Confidence 77889999999887 7888764 44455432221 111111 11 0 1123456789999999988
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 047408 616 RFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNT 661 (830)
Q Consensus 616 ~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~ 661 (830)
++++- .+.+.+-...+|+..|.++++.++++.|..-
T Consensus 365 ~YWdV----------~~y~~asVLAnd~~kaiqAae~mfKLk~P~W 400 (1226)
T KOG4279|consen 365 EYWDV----------ATYFEASVLANDYQKAIQAAEMMFKLKPPVW 400 (1226)
T ss_pred HHHhH----------HHhhhhhhhccCHHHHHHHHHHHhccCCcee
Confidence 88753 2345666777899999999999999998753
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=87.31 E-value=2 Score=44.08 Aligned_cols=91 Identities=14% Similarity=0.074 Sum_probs=51.8
Q ss_pred HHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 047408 567 YACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEV 643 (830)
Q Consensus 567 ~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~ 643 (830)
+-|.++|.++||+..|.... .+.| +...|..-..+|.|..++..|+.=-+.. .+.. -.-.|.--..+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 44666777777777776543 4445 5566666666677777766665433332 1110 012333333344445667
Q ss_pred HHHHHHHHHHhccCCCC
Q 047408 644 KLAEKVAEHVFELEPDN 660 (830)
Q Consensus 644 ~~a~~~~~~~~~l~p~~ 660 (830)
++|..-++.+++++|++
T Consensus 182 ~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHhHHHHHhhCccc
Confidence 77777777777777774
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.29 E-value=33 Score=34.04 Aligned_cols=194 Identities=14% Similarity=0.122 Sum_probs=105.4
Q ss_pred hhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCC--hhhHHHHHHHHHhcCChHHH
Q 047408 466 PACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKD--LISWTIMIAGYGMHGFGCDA 543 (830)
Q Consensus 466 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d--~~~~~~li~~~~~~g~~~~A 543 (830)
.++-...++++++..+..+.+. .+.+...|.+ ...++.|--+.++|.+-+ +..|+--+.+|.++|.++-|
T Consensus 39 vafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA 110 (308)
T KOG1585|consen 39 VAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA 110 (308)
T ss_pred HHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence 4455566777777766555532 2223222221 122334444444443221 23456677888888888877
Q ss_pred HHHHHHHHH--cCCCCChhH--HHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 047408 544 IATFNDMRQ--AGIEPDEVS--FISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIE 619 (830)
Q Consensus 544 ~~l~~~m~~--~g~~Pd~~t--~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~ 619 (830)
-..+++.-+ ++++||... |.--+......++...| .+.|+.....|.|..+++||-..|.
T Consensus 111 AmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma----------------~el~gk~sr~lVrl~kf~Eaa~a~l 174 (308)
T KOG1585|consen 111 AMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMA----------------FELYGKCSRVLVRLEKFTEAATAFL 174 (308)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHH----------------HHHHHHhhhHhhhhHHhhHHHHHHH
Confidence 766665533 346666531 22222222222222222 3445666677888888888877776
Q ss_pred hCC-------CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhcc----CCCCcchHHHHHHHHhhhcCHHHHHHHH
Q 047408 620 MMP-------VAPDA-TIWGSLLCGCRIHHEVKLAEKVAEHVFEL----EPDNTGYYVLLANVYAEAEKWEEVKKLR 684 (830)
Q Consensus 620 ~m~-------~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~l----~p~~~~~~~~l~~~y~~~g~~~~A~~~~ 684 (830)
+-. .-|+. -.+-+.+-.+....|+..|++.++.-.++ .|++......|...| ..|+.+++.++.
T Consensus 175 Ke~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 175 KEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 642 11222 22334444455566888898888875543 456655555555554 467888877763
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=87.27 E-value=5.6 Score=44.08 Aligned_cols=105 Identities=13% Similarity=0.184 Sum_probs=72.1
Q ss_pred HHHHhhcCCChHHHHHHHhhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhh
Q 047408 308 LLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIG 387 (830)
Q Consensus 308 Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a 387 (830)
-.+...++|+++.|.++-++.. +...|..|.....++|+.+-|.+.|.+... |..++--+...|+.+.-
T Consensus 324 rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L 392 (443)
T PF04053_consen 324 RFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKL 392 (443)
T ss_dssp HHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHH
T ss_pred HhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHH
Confidence 3455678899999988877665 555899999999999999999998887543 45566666677777777
Q ss_pred hhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcC
Q 047408 388 KDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQM 429 (830)
Q Consensus 388 ~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m 429 (830)
.++-......| -+|.-...+.-.|++++..+++.+-
T Consensus 393 ~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 393 SKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 77766666655 1444555566667777777777654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=87.21 E-value=0.21 Score=45.93 Aligned_cols=127 Identities=9% Similarity=0.060 Sum_probs=80.7
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCCCCeehHHHHHHHHHhcCChhHHH
Q 047408 274 LSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAI 353 (830)
Q Consensus 274 l~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~ 353 (830)
++.+.+.+.......+...+++.+...+..+.|.|+..|++.++.+...++++.... .-...++..+.+.|.+++|.
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a~ 90 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEAV 90 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHHH
Confidence 444444555555555666666655566777889999999999888888888874333 44566778888888888888
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCC
Q 047408 354 RLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGS 418 (830)
Q Consensus 354 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~ 418 (830)
-++.++....- .+..+...++++.|.+.... ..+..+|..+++.+...+.
T Consensus 91 ~Ly~~~~~~~~---------al~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 91 YLYSKLGNHDE---------ALEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHCCTTHTT---------CSSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHcccHHH---------HHHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCc
Confidence 88877643211 11113445566666644333 2456778888887766554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=86.87 E-value=1.7 Score=30.36 Aligned_cols=34 Identities=18% Similarity=0.352 Sum_probs=25.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhH
Q 047408 526 SWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVS 561 (830)
Q Consensus 526 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t 561 (830)
+|..+...|...|++++|.++|++.++ ..||...
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~~ 36 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDDPE 36 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCHH
Confidence 566777788888888888888888887 4676653
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.80 E-value=19 Score=41.91 Aligned_cols=173 Identities=13% Similarity=0.073 Sum_probs=100.0
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHH----HHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCC
Q 047408 499 IVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIA----GYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGL 574 (830)
Q Consensus 499 Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~----~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~ 574 (830)
-+++..+...++.|..+-+.-.. |...-..+.. -+.+.|++++|...|-+-... +.|..+ +.-+..+..
T Consensus 340 kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s~V-----i~kfLdaq~ 412 (933)
T KOG2114|consen 340 KLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPSEV-----IKKFLDAQR 412 (933)
T ss_pred HHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChHHH-----HHHhcCHHH
Confidence 45566666666666666554322 2222222222 234568888888877776543 445443 233344445
Q ss_pred HHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047408 575 VDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVF 654 (830)
Q Consensus 575 ~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 654 (830)
..+-..|++.+.+. |+ .+..|-+.|+.+|.+.++.+.-.++++.-+..--..-....+..|+..+-.++|..++.+.-
T Consensus 413 IknLt~YLe~L~~~-gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~ 490 (933)
T KOG2114|consen 413 IKNLTSYLEALHKK-GL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFK 490 (933)
T ss_pred HHHHHHHHHHHHHc-cc-ccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhc
Confidence 55555666666533 44 35667778888888888888888888776410001123456677788888888887777653
Q ss_pred ccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHH
Q 047408 655 ELEPDNTGYYVLLANVYAEAEKWEEVKKLREKI 687 (830)
Q Consensus 655 ~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 687 (830)
. .+ ..|--++-..|++++|.+.++.|
T Consensus 491 ~-he------~vl~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 491 K-HE------WVLDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred c-CH------HHHHHHHHHhcCHHHHHHHHhcC
Confidence 2 11 12333566677777777776544
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=86.61 E-value=3.2 Score=38.47 Aligned_cols=83 Identities=7% Similarity=-0.016 Sum_probs=35.9
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhHH-HHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHH
Q 047408 535 GMHGFGCDAIATFNDMRQAGIEPDEVSF-ISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSE 613 (830)
Q Consensus 535 ~~~g~~~~A~~l~~~m~~~g~~Pd~~t~-~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~e 613 (830)
-+.|++++|..+|+-+.. ..|...-| ..|..+|-..+.+++|...|.....--.-.|.+ +--+...|...|+.++
T Consensus 48 y~~Gk~~eA~~~F~~L~~--~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p--~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCI--YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP--VFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHCCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc--cchHHHHHHHhCCHHH
Confidence 344555555555555444 23333322 222233333455555555554432110111222 2223445555556666
Q ss_pred HHHHHHhC
Q 047408 614 AYRFIEMM 621 (830)
Q Consensus 614 A~~~~~~m 621 (830)
|.+.|+..
T Consensus 124 A~~~f~~a 131 (165)
T PRK15331 124 ARQCFELV 131 (165)
T ss_pred HHHHHHHH
Confidence 65555554
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.58 E-value=25 Score=34.15 Aligned_cols=158 Identities=14% Similarity=0.081 Sum_probs=79.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 047408 525 ISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVD 603 (830)
Q Consensus 525 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~ 603 (830)
..||-+.--+...|+++.|.+.|+...+ +.|... ++..=.-++.-.|+++-|.+-|...- .-.|+...-+.-+-
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fY---Q~D~~DPfR~LWLY 174 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFY---QDDPNDPFRSLWLY 174 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHHHHHHH---hcCCCChHHHHHHH
Confidence 4555555556666666666666666665 344321 22222233445566666655444332 22232211111122
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC-------cchHHHHHHHHhhhcC
Q 047408 604 LLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDN-------TGYYVLLANVYAEAEK 676 (830)
Q Consensus 604 ~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~-------~~~~~~l~~~y~~~g~ 676 (830)
+-.+.=+..+|..-+.+--...|..-|+..+-.+.--.--+ +.+++++.+-..++ ..+|.-|+.-|-..|.
T Consensus 175 l~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~ 252 (297)
T COG4785 175 LNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGD 252 (297)
T ss_pred HHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcccc
Confidence 22233345555543322222345566766655543211111 12233333322222 3468889999999999
Q ss_pred HHHHHHHHHHHHh
Q 047408 677 WEEVKKLREKISR 689 (830)
Q Consensus 677 ~~~A~~~~~~m~~ 689 (830)
.++|..+++....
T Consensus 253 ~~~A~~LfKLaia 265 (297)
T COG4785 253 LDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999997764
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=86.41 E-value=7.6 Score=36.55 Aligned_cols=46 Identities=20% Similarity=0.224 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcC----HHHHHHHHHHHH
Q 047408 643 VKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEK----WEEVKKLREKIS 688 (830)
Q Consensus 643 ~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~----~~~A~~~~~~m~ 688 (830)
+++|..-+++++.++|+...++.++++.|...|. -.+|.+.+++..
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 4566677788889999999999999999999875 334555555544
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=85.92 E-value=46 Score=34.44 Aligned_cols=18 Identities=11% Similarity=-0.202 Sum_probs=12.2
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 047408 636 GCRIHHEVKLAEKVAEHV 653 (830)
Q Consensus 636 ~~~~~g~~~~a~~~~~~~ 653 (830)
.+...++++.|...++-.
T Consensus 255 ~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHhhcCHHHHHHHHHHH
Confidence 456667787777777644
|
It is also involved in sporulation []. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.47 E-value=4.5 Score=41.33 Aligned_cols=75 Identities=13% Similarity=0.224 Sum_probs=60.7
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCChhHHHH
Q 047408 493 RNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQ-----AGIEPDEVSFIS 564 (830)
Q Consensus 493 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~Pd~~t~~~ 564 (830)
..++..++..|..+|+.+.+.+.+++.. .-|...|..+|.+|.+.|+...|+..|+++.+ .|+.|-..+-..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 4567788999999999999999998875 33677999999999999999999999999876 477777665444
Q ss_pred HHH
Q 047408 565 VLY 567 (830)
Q Consensus 565 ll~ 567 (830)
...
T Consensus 233 y~~ 235 (280)
T COG3629 233 YEE 235 (280)
T ss_pred HHH
Confidence 433
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.02 E-value=10 Score=36.71 Aligned_cols=55 Identities=15% Similarity=0.166 Sum_probs=36.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 634 LCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 634 l~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
++.+.+.+.+++|+..++.-++-+|.+...-..|..+|+-+|+|++|..-.+..-
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 3444555666677777776667777777766677777777777777766555443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=84.71 E-value=1.3 Score=29.44 Aligned_cols=28 Identities=18% Similarity=0.050 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 047408 629 IWGSLLCGCRIHHEVKLAEKVAEHVFEL 656 (830)
Q Consensus 629 ~~~~ll~~~~~~g~~~~a~~~~~~~~~l 656 (830)
+|..|...|...|++++|+.++++++++
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4667777788888888888888875543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=83.98 E-value=2 Score=27.83 Aligned_cols=32 Identities=16% Similarity=0.202 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 047408 525 ISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPD 558 (830)
Q Consensus 525 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd 558 (830)
.+|..+...|...|++++|++.|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 3577777888888888888888888877 4554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.82 E-value=45 Score=35.44 Aligned_cols=109 Identities=19% Similarity=0.336 Sum_probs=82.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHhcc---CCCC----
Q 047408 600 CMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSL------------LCGCRIHHEVKLAEKVAEHVFEL---EPDN---- 660 (830)
Q Consensus 600 ~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~l---~p~~---- 660 (830)
.|+..+...|++++|.+++.+.|++ ||+++ +..|...+|+-.|..+.+++... +|+-
T Consensus 136 ~L~~ike~~Gdi~~Aa~il~el~VE----Tygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lK 211 (439)
T KOG1498|consen 136 MLAKIKEEQGDIAEAADILCELQVE----TYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELK 211 (439)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcchh----hhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHH
Confidence 4667788999999999999998743 33322 45688889999999888877532 2321
Q ss_pred cchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEe
Q 047408 661 TGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIEIKGKVNIFVA 712 (830)
Q Consensus 661 ~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~~~swi~~~~~~~~f~~ 712 (830)
-.+|.++..++...+.+=++.+.++..-+-|-.+...--|+++-..+-.|..
T Consensus 212 lkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~~ 263 (439)
T KOG1498|consen 212 LKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFCV 263 (439)
T ss_pred HHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEEe
Confidence 2469999999999999999999999998888777655578887665555553
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=83.52 E-value=13 Score=33.21 Aligned_cols=86 Identities=12% Similarity=0.166 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhc---CCHHHHHHHHHHHhc-cCCCCcc-hHHHHHHHHhhhcCHHHHHHHHHHHHhCCCcCCCceeEEEE
Q 047408 629 IWGSLLCGCRIH---HEVKLAEKVAEHVFE-LEPDNTG-YYVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIEI 703 (830)
Q Consensus 629 ~~~~ll~~~~~~---g~~~~a~~~~~~~~~-l~p~~~~-~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~~~swi~~ 703 (830)
+--.+.++.... .+++++..+++.+++ -.|+... ....|+-.+++.|+++.+.++.....+
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~-------------- 99 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE-------------- 99 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh--------------
Confidence 333444444333 356777788888876 4454333 234456667888888888888776653
Q ss_pred CCEEEEEEeCCcCCCChhHHHHHHHHHHHHHHHcCcc
Q 047408 704 KGKVNIFVAGGSSHPHAKKIESLLKRLRLEMKREGYF 740 (830)
Q Consensus 704 ~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~~~~~g~~ 740 (830)
..|++.+....=+.+.++|++.|++
T Consensus 100 ------------~e~~n~Qa~~Lk~~ied~itkegli 124 (149)
T KOG3364|consen 100 ------------TEPNNRQALELKETIEDKITKEGLI 124 (149)
T ss_pred ------------hCCCcHHHHHHHHHHHHHHhhccee
Confidence 2344555555555667788887764
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.39 E-value=15 Score=41.00 Aligned_cols=147 Identities=18% Similarity=0.068 Sum_probs=103.5
Q ss_pred hcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhH-HHHHHHHHHccCCHHHHHHHHH
Q 047408 505 KCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVS-FISVLYACSHSGLVDEGWRFFN 583 (830)
Q Consensus 505 k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t-~~~ll~a~~~~g~~~~a~~~~~ 583 (830)
-.|+++.|..++..+++ ..-+.++.-+...|..++|+++ .||..- |-.. .+.|+++.|.++-.
T Consensus 598 mrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~---------s~D~d~rFela----l~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALEL---------STDPDQRFELA----LKLGRLDIAFDLAV 661 (794)
T ss_pred hhccccccccccccCch---hhhhhHHhHhhhccchHhhhhc---------CCChhhhhhhh----hhcCcHHHHHHHHH
Confidence 35788888887777763 2345566667778888888774 444432 3222 36789999988776
Q ss_pred HhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcch
Q 047408 584 MMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGY 663 (830)
Q Consensus 584 ~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 663 (830)
+.. +..-|..|.++...+|++..|.+.|.... -|.+|+-.+...|+.+.-..+.+..-+....|
T Consensus 662 e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N--- 725 (794)
T KOG0276|consen 662 EAN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNN--- 725 (794)
T ss_pred hhc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccc---
Confidence 543 34678999999999999999999998763 37788888888888886666666555544443
Q ss_pred HHHHHHHHhhhcCHHHHHHHHH
Q 047408 664 YVLLANVYAEAEKWEEVKKLRE 685 (830)
Q Consensus 664 ~~~l~~~y~~~g~~~~A~~~~~ 685 (830)
.--..|...|+.++..+++.
T Consensus 726 --~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 726 --LAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred --hHHHHHHHcCCHHHHHHHHH
Confidence 23345777899999888754
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=82.85 E-value=58 Score=38.05 Aligned_cols=159 Identities=14% Similarity=0.197 Sum_probs=74.6
Q ss_pred hhHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCChh-HHHHHHHH-HHccCCHHHHHHHHHHhHhh-----------
Q 047408 525 ISWTIMIAGYGM---HGFGCDAIATFNDMRQAGIEPDEV-SFISVLYA-CSHSGLVDEGWRFFNMMRYE----------- 588 (830)
Q Consensus 525 ~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a-~~~~g~~~~a~~~~~~m~~~----------- 588 (830)
.-+..||..|.+ ..++.+|++.|--+.... .|+.. .+...+.- ....+.++ .++..+..+
T Consensus 325 ln~arLI~~Y~~~F~~td~~~Al~Y~~li~~~~-~~~~~~l~~~~l~eLvletref~---~LLG~i~~dG~r~~G~i~~~ 400 (613)
T PF04097_consen 325 LNFARLIGQYTRSFEITDPREALQYLYLICLFK-DPEQRNLFHECLRELVLETREFD---LLLGDINPDGSRTPGLIERR 400 (613)
T ss_dssp --HHHHHHHHHHTTTTT-HHHHHHHHHGGGGS--SCCHHHHHHHHHHHHHHHH--HH---HHHEEE-TTS-EEE-HHHHT
T ss_pred cCHHHHHHHHHHHHhccCHHHHHHHHHHHHHcC-CchHHHHHHHHHHHHHHccCCHH---HHCCCCCCCCccccceeecc
Confidence 456778888875 467888888887776532 24433 22222211 11111111 111111000
Q ss_pred ---cCCCCCcchHH----HHHHHHHhcCCHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCC------------HHHHH
Q 047408 589 ---CNIEPKLEHYA----CMVDLLSRTGNLSEAYRFIEMMPVAPDA--TIWGSLLCGCRIHHE------------VKLAE 647 (830)
Q Consensus 589 ---~~~~p~~~~y~----~lv~~l~r~g~~~eA~~~~~~m~~~p~~--~~~~~ll~~~~~~g~------------~~~a~ 647 (830)
.++..+..-.. ....-+...|++++|..+++-.. +.|. .+.+.+|+-...... ...|.
T Consensus 401 ~~Li~~~~~~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La~-~~d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~ 479 (613)
T PF04097_consen 401 LSLIKFDDDEDFLREIIEQAAREAEERGRFEDAILLYHLAE-EYDKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAK 479 (613)
T ss_dssp GGGGT-SSSSHHHHHHHHHHHHHHHHCT-HHHHHHHHHHTT--HHHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHH
T ss_pred ccccCCCCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHcCccccccccchhhhHHHHHH
Confidence 01222222222 23345667899999999998875 3332 355666655433322 33444
Q ss_pred HHHHHHhc-------cCCCCcchHHHHHHH-----HhhhcCHHHHHHHHHHHH
Q 047408 648 KVAEHVFE-------LEPDNTGYYVLLANV-----YAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 648 ~~~~~~~~-------l~p~~~~~~~~l~~~-----y~~~g~~~~A~~~~~~m~ 688 (830)
.+.+..-. .++.+..++..|.++ +...|+|++|.+..+.+.
T Consensus 480 ~i~~~y~~~~~~~~~~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 480 EILERYKSNPHISSKVSRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKLD 532 (613)
T ss_dssp HHHHHHTTSHHHHTTS-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT
T ss_pred HHHHHHHhCcchHhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 44433221 223333344444443 678999999998765543
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=82.65 E-value=35 Score=30.41 Aligned_cols=58 Identities=10% Similarity=0.089 Sum_probs=29.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhH
Q 047408 528 TIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMR 586 (830)
Q Consensus 528 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 586 (830)
+..+..+...|+-++-.++++++.+ +-+|+......+.+||.+.|...++.+++....
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 3344555556666665566665543 235555556666666666666666666666554
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=82.15 E-value=4.2 Score=29.84 Aligned_cols=31 Identities=29% Similarity=0.374 Sum_probs=24.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCcch
Q 047408 633 LLCGCRIHHEVKLAEKVAEHVFELEPDNTGY 663 (830)
Q Consensus 633 ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 663 (830)
|.-|+.+.|+++.|.+..+.+++++|+|..+
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 3446789999999999999999999998644
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=82.00 E-value=7.6 Score=28.49 Aligned_cols=50 Identities=14% Similarity=0.280 Sum_probs=39.3
Q ss_pred HHHHHHHHhhhcCHHHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCcCCCChhHHHHHHHHHHHHHHHcCc
Q 047408 664 YVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIEIKGKVNIFVAGGSSHPHAKKIESLLKRLRLEMKREGY 739 (830)
Q Consensus 664 ~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~~~swi~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~~~~~g~ 739 (830)
...|+-.+.+.|++++|.+..+.+.+ .+|++.+.....+.+.++|++.|.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~--------------------------~eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLE--------------------------IEPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--------------------------HTTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------hCCCcHHHHHHHHHHHHHHhccCC
Confidence 45677788999999999999888764 467788888888888888988874
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.26 E-value=6 Score=40.45 Aligned_cols=56 Identities=14% Similarity=0.160 Sum_probs=28.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 633 LLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 633 ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
+...+...|+.+.+...++++++.+|-+-..|..|...|...|+...|.+.++.++
T Consensus 159 lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 159 LAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 33444444555555555555555555555555555555555555555555554443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=80.69 E-value=36 Score=31.95 Aligned_cols=132 Identities=13% Similarity=0.144 Sum_probs=64.7
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCCchHHHHHHHHhhcC-CChHHHHHHHhhcC
Q 047408 252 LEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKAC-FSKEISFNNTLLDMYSKC-GDLDGAIRVFEKMG 329 (830)
Q Consensus 252 ~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g-~~~~~~~~~~Li~~y~k~-g~~~~A~~~f~~m~ 329 (830)
++.++.+.+.|+.|+...+..+++.+.+.|....-.++. ..+ ++++..+...|++.-.+. .-..-|...+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----QYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----hhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 344555556667777777777777776666554333222 222 233333333333332211 01222333333332
Q ss_pred CCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHH
Q 047408 330 ERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIK 395 (830)
Q Consensus 330 ~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 395 (830)
..+..++..+...|++-+|+++.+.... .+......++.+..+.+|...-..++....
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2455667777888888888887766422 122233445555555544444344444333
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=80.46 E-value=1.2 Score=40.87 Aligned_cols=87 Identities=9% Similarity=0.134 Sum_probs=54.6
Q ss_pred ccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCC
Q 047408 460 TMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGF 539 (830)
Q Consensus 460 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~ 539 (830)
....++..+.+.+..+...++++.+.+.+...+..+.+.|+.+|++.+..++..++++.... .-...++..+-++|.
T Consensus 9 ~~~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 9 EISEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGL 85 (143)
T ss_dssp CSCCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTS
T ss_pred CHHHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcch
Confidence 34567777777788888888888888777667788888888888888776776666653222 222334444444455
Q ss_pred hHHHHHHHHH
Q 047408 540 GCDAIATFND 549 (830)
Q Consensus 540 ~~~A~~l~~~ 549 (830)
+++|.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5544444443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PRK12798 chemotaxis protein; Reviewed | Back alignment and domain information |
|---|
Probab=80.19 E-value=93 Score=33.70 Aligned_cols=177 Identities=15% Similarity=0.161 Sum_probs=118.2
Q ss_pred cCCHHHHHHHhhhCCC----CChhhHHHHHHHHH-hcCChHHHHHHHHHHHHcCCCCChh----HHHHHHHHHHccCCHH
Q 047408 506 CGVLVLARSLFDMIPA----KDLISWTIMIAGYG-MHGFGCDAIATFNDMRQAGIEPDEV----SFISVLYACSHSGLVD 576 (830)
Q Consensus 506 ~g~~~~A~~~f~~m~~----~d~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~Pd~~----t~~~ll~a~~~~g~~~ 576 (830)
.|+.++|.+.+..+.. +.+..+-+|+.+-. ...++.+|+++|++..- .-|-.. ....-+..+...|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 6999999999998863 34567777776654 55679999999999886 456543 3444455678899999
Q ss_pred HHHHHHHHhHhhcCCCCCcchHH-HHHHHH---HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047408 577 EGWRFFNMMRYECNIEPKLEHYA-CMVDLL---SRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEH 652 (830)
Q Consensus 577 ~a~~~~~~m~~~~~~~p~~~~y~-~lv~~l---~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 652 (830)
++..+-..-..+|.-.|=...|. -.+..+ ...-..+.-.+++..|+-.--..+|..+-..-...|+.+.|..+.++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 98887766666666666433322 223333 33334455556666664222357888888888999999999999999
Q ss_pred HhccCCCCcchHHHHHHHHhhh-----cCHHHHHHHHH
Q 047408 653 VFELEPDNTGYYVLLANVYAEA-----EKWEEVKKLRE 685 (830)
Q Consensus 653 ~~~l~p~~~~~~~~l~~~y~~~-----g~~~~A~~~~~ 685 (830)
+..+.++ ...-...+++|... .+.++|.+..+
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~ 319 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELS 319 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHh
Confidence 9988744 33334445555543 33555555443
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.13 E-value=74 Score=32.53 Aligned_cols=57 Identities=12% Similarity=-0.025 Sum_probs=50.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 632 SLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 632 ~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
-....|...|++.+|..+.++++.++|-+...+-.|.++|+..|+--+|.+-++.|.
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 334568999999999999999999999999999999999999999888877777665
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=80.10 E-value=22 Score=29.86 Aligned_cols=88 Identities=18% Similarity=0.268 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047408 473 ALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQ 552 (830)
Q Consensus 473 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 552 (830)
..++|..|-+.+...+-. ...+--.-+..+...|++++|..+.+.+..||+..|-++-.. +.|..+++..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 345666666666554422 333333335567889999999999999999999999887654 56777888888888877
Q ss_pred cCCCCChhHHHH
Q 047408 553 AGIEPDEVSFIS 564 (830)
Q Consensus 553 ~g~~Pd~~t~~~ 564 (830)
+| .|...+|..
T Consensus 97 sg-~p~lq~Faa 107 (115)
T TIGR02508 97 SG-DPRLQTFVA 107 (115)
T ss_pred CC-CHHHHHHHH
Confidence 76 566656643
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=80.01 E-value=39 Score=36.20 Aligned_cols=67 Identities=18% Similarity=0.193 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC----CcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCC
Q 047408 626 DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPD----NTGYYVLLANVYAEAEKWEEVKKLREKISRRGL 692 (830)
Q Consensus 626 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~----~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~ 692 (830)
...+|..+...|+++|+++.|..++.++.+..+. .+.....-+.+....|+-++|....+...+..+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999999886532 456677779999999999999998777665333
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 72.2 bits (176), Expect = 5e-13
Identities = 62/488 (12%), Positives = 147/488 (30%), Gaps = 123/488 (25%)
Query: 385 EIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAE-SVFNQMPVKDIV-SWNTMIG 442
E G+ + Y D+ S++ + + C + D S+ ++ + I+ S + + G
Sbjct: 10 ETGEHQYQY---KDI-LSVFEDAFVDNF--DCKDVQDMPKSILSKEEIDHIIMSKDAVSG 63
Query: 443 ALDLFVAML-------QNF-----EPD-GVTMACILPACASLAALERGREIHGYILRHGI 489
L LF +L Q F + M+ I + YI
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ-----RQPSMMTRMYI----- 113
Query: 490 SADRNVANAIVDMYVKCGV------LVLARSLFDMIPAKDLISWTIMIAGYGMHGFG--C 541
R+ ++ K V L L ++L ++ PAK+++ G+ G G
Sbjct: 114 -EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI-------DGVLGSGKTW 165
Query: 542 DAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACM 601
A+ + ++ ++++ S +++ + + + N + +H
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI--DPNWTSRSDH---S 220
Query: 602 VDLLSRTGNLSEAYRFIEMMPVAP----------DATIWGSLLCGCRI-----HHEV--K 644
++ R ++ R + +A W + C+I +V
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280
Query: 645 LAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIEIK 704
L+ H+ L+ + +EVK L K +++ +
Sbjct: 281 LSAATTTHIS-LDHHSMTLTP------------DEVKSLLLK-------------YLDCR 314
Query: 705 GKVNIFVAGGSSHPH-AKKIESLLKRLRLEMKREGYFPKT--RYALINADEMEKEVALC- 760
P + E R+ T + +N D++ +
Sbjct: 315 P---------QDLPREVLTTNPRRLSIIAESIRD--GLATWDNWKHVNCDKLTTIIESSL 363
Query: 761 -----GHSEKLAMAFGIL----NLPAGQTIRVTKNLRVCGDCHEMAKFMSKTARREIVLR 811
K+ + ++P + + + ++ ++K + +V +
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPT-ILLSL---IWFDVIKSDVMVVVNKLHKYSLVEK 419
Query: 812 DSNRFHHF 819
Sbjct: 420 QPKESTIS 427
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 2e-07
Identities = 62/434 (14%), Positives = 131/434 (30%), Gaps = 115/434 (26%)
Query: 70 IGRFCEVGNLEKAMEVLYSSEKSKIDTKTYCSILQLCADLK-SLEDGKKVHSII------ 122
+ + + ++ L +ID + S +++K + + +
Sbjct: 189 LKNCNSPETVLEMLQKLLY----QID-PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243
Query: 123 CESGIVIDDGVLGSKLVFMF-------VTCGDLKEGRRVFNKIDNGKVFIWNLLMHEYSK 175
+V+ + V +K F +T ++V + + ++ + +S
Sbjct: 244 ENCLLVLLN-VQNAKAWNAFNLSCKILLTTRF----KQVTDFLSAATTT--HISLDHHSM 296
Query: 176 TGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGN-------SRRVKDAHKLFDELS 228
T E L K L L + N + ++D +D
Sbjct: 297 TLTPDEVKSLLLK--YLDCRPQD------LPREVLTTNPRRLSIIAESIRDGLATWDNWK 348
Query: 229 DRDVVSWNCMISGYIAN-GVAE-----KGLEVFKEMLNLGFNVDLATMV----------- 271
+ +I + AE L VF + + T++
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP------SAHIPTILLSLIWFDVIKS 402
Query: 272 ---TVLSGCANCGAL-----MFGRAVHA--FALKACFSKEISFNNTLLDMYS--KCGDLD 319
V++ + ++ + LK E + + +++D Y+ K D D
Sbjct: 403 DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462
Query: 320 GAIRVFEKMGERSVVSWTSMIAGY-AREGVFDGAIRLFRGM------VREGIEPDVYAIT 372
I + + S I G+ + + LFR + + + I D A
Sbjct: 463 DLIPPYLDQ------YFYSHI-GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW- 514
Query: 373 SILHACACDGLLEIGKDVH---DYIKENDMQSSLYVSNALMDMYAKCGS----------- 418
A +L + + YI +ND + V NA++D K
Sbjct: 515 -----NASGSILNTLQQLKFYKPYICDNDPKYERLV-NAILDFLPKIEENLICSKYTDLL 568
Query: 419 ----MADAESVFNQ 428
MA+ E++F +
Sbjct: 569 RIALMAEDEAIFEE 582
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.6 bits (120), Expect = 2e-06
Identities = 38/253 (15%), Positives = 83/253 (32%), Gaps = 67/253 (26%)
Query: 25 KFASYKPSTLPIIVSSKSHSSCTINP-----ISASISKTLVCKTKNY-NAEIGRFCEVGN 78
K+ +P LP T NP I+ SI + + N+ + + +
Sbjct: 309 KYLDCRPQDLP-------REVLTTNPRRLSIIAESI-RDGLATWDNWKHVNCDKLTTI-- 358
Query: 79 LEKAMEVLYSSEK-------------SKIDTKTYC------------SILQLCADLKSL- 112
+E ++ VL +E + I T ++ SL
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK-YSLV 417
Query: 113 -EDGKK----VHSIICESGIVIDD-GVLGSKLV--FMFVTCGDLKEGRRVFNKIDNGKVF 164
+ K+ + SI E + +++ L +V + D + + +D +
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD--LIPPYLDQ---Y 472
Query: 165 IWNLLMH-----EYSKTGNFKESLYL-FKKMQSLGIAADSYTFSCVLKCLAVVGNSRRVK 218
++ + H E+ + ++L F+ ++ I DS ++ L + + K
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ-KIRHDSTAWNASGSILNTLQQLKFYK 531
Query: 219 ----DAHKLFDEL 227
D ++ L
Sbjct: 532 PYICDNDPKYERL 544
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 57.5 bits (137), Expect = 1e-08
Identities = 19/161 (11%), Positives = 54/161 (33%), Gaps = 10/161 (6%)
Query: 78 NLEKAMEVLYSSEKSKIDTKTYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLGSK 137
+ +E + +LQ SL+ + ++ + L +
Sbjct: 74 QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLA- 132
Query: 138 LVFMFVTCGDLKEGRRVFNKIDNGK-------VFIWNLLMHEYSKTGNFKESLYLFKKMQ 190
+ L + + + ++N +M +++ G FKE +Y+ ++
Sbjct: 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192
Query: 191 SLGIAADSYTFSCVLKCLAVVGNSRRVKDAHKLFDELSDRD 231
G+ D +++ L+C+ + + +++S
Sbjct: 193 DAGLTPDLLSYAAALQCMGRQD--QDAGTIERCLEQMSQEG 231
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 56.4 bits (134), Expect = 4e-08
Identities = 16/114 (14%), Positives = 38/114 (33%), Gaps = 7/114 (6%)
Query: 273 VLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGER- 331
+L +L +A +A S + L A + +
Sbjct: 98 LLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQR 157
Query: 332 ------SVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACA 379
++ + +++ G+AR+G F + + + G+ PD+ + + L
Sbjct: 158 QKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMG 211
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 54.8 bits (130), Expect = 1e-07
Identities = 31/239 (12%), Positives = 73/239 (30%), Gaps = 12/239 (5%)
Query: 456 PDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSL 515
P +A +L +L+ + G + +S + A + L LA L
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 516 FDMI-------PAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYA 568
+ L + ++ G+ G + + ++ AG+ PD +S+ + L
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 569 CSHSGLVDEG-WRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMPVAPDA 627
R M + ++ + A ++ R L ++ + P
Sbjct: 210 MGRQDQDAGTIERCLEQM-SQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQL 268
Query: 628 TIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREK 686
+ ++ +V + + P T + ++ E V + +
Sbjct: 269 P---PPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKP 324
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 51.4 bits (121), Expect = 1e-06
Identities = 18/166 (10%), Positives = 46/166 (27%), Gaps = 8/166 (4%)
Query: 450 MLQNFEPDGVTMACILPACASLAALERGREI---HGYILRHGISADRNVANAIVDMYVKC 506
+ C L + H + ++ NA++ + +
Sbjct: 119 SQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQ 178
Query: 507 GVLVLARSLFDMIPAK----DLISWTIMIAGYGMHGFGCDAIAT-FNDMRQAGIEPDEVS 561
G + M+ DL+S+ + G I M Q G++ +
Sbjct: 179 GAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALF 238
Query: 562 FISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSR 607
+L + ++ + + P + + D+ ++
Sbjct: 239 TAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 50.6 bits (119), Expect = 2e-06
Identities = 26/244 (10%), Positives = 59/244 (24%), Gaps = 50/244 (20%)
Query: 169 LMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRRVKDAHKLFDELS 228
L+ E + + ++ KC + ++ AH L
Sbjct: 98 LLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTD---QLPLAHHLLVVHH 154
Query: 229 DR-------DVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCG 281
+ + +N ++ G+ G ++ + V + + G DL +
Sbjct: 155 GQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY----------- 203
Query: 282 ALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAI-RVFEKMGE----RSVVSW 336
L + G I R E+M + +
Sbjct: 204 ------------------------AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFT 239
Query: 337 TSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKE 396
+++ R V ++ P + +L +H +K
Sbjct: 240 AVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKT 299
Query: 397 NDMQ 400
Sbjct: 300 LQCL 303
|
| >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 | Back alignment and structure |
|---|
Score = 42.6 bits (99), Expect = 9e-05
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 11/35 (31%)
Query: 721 KKIESLLKRLRLEMKREGYFPKTRYAL-INADEME 754
KK+++ L+L Y + AL I A ME
Sbjct: 23 KKLQA---SLKL------YADDSAPALAIKA-TME 47
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 2e-04
Identities = 24/169 (14%), Positives = 52/169 (30%), Gaps = 16/169 (9%)
Query: 534 YGMHGFGCDAIATFNDMRQAGIEPDEVSFISVL-YACSHSGLVDEGWRFFNMMRYECNIE 592
H +A + ++ +F+ + + D R +
Sbjct: 75 LASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGD------ 128
Query: 593 PKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPDATIWGSLLCGCRIHH---EVKLAEK 648
LE A V +L + L A + ++ M DAT+ + +++ A
Sbjct: 129 -SLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYY 187
Query: 649 VAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNPG 697
+ + + + A + +WE E + + L K+ G
Sbjct: 188 IFQEMADKCSPTLLLLNGQAACHMAQGRWEAA----EGVLQEALDKDSG 232
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 6e-04
Identities = 16/172 (9%), Positives = 45/172 (26%), Gaps = 5/172 (2%)
Query: 287 RAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGER----SVVSWTSMIAG 342
++ A+ K + D + ++ ++ + + +
Sbjct: 84 ANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKF 143
Query: 343 YAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSS 402
R +F+ + +T+ L C + + + +
Sbjct: 144 ARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP 203
Query: 403 LYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNF 454
YV A +D + + +F ++ + F+A N
Sbjct: 204 EYV-LAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI 254
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 830 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.94 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.94 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.9 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.88 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.87 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.84 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.82 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.81 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.79 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.75 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.73 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.72 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.71 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.71 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.69 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.69 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.68 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.66 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.65 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.64 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.64 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.64 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.63 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.63 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.63 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.6 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.59 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.59 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.58 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.58 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.53 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.52 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.52 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.44 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.42 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.42 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.4 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.36 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.35 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.35 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.35 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.34 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.33 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.33 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.33 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.33 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.33 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.31 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.31 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.29 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.28 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.26 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.26 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.25 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.24 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.23 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.22 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.22 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.22 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.22 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.19 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.18 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.16 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.15 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.15 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.14 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.13 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.13 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.12 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.1 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.07 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.06 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.06 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.98 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 98.96 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 98.95 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.93 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.93 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.9 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.87 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.86 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.86 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.84 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.82 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.82 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.8 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.78 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.76 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.74 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.73 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.73 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.73 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.72 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.71 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.65 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.63 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.63 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.63 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.62 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.62 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.61 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.58 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.58 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.56 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.55 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.54 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.53 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.49 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.49 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.48 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.46 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.46 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.46 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.43 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.43 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.42 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.41 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.39 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.39 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.38 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.36 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.35 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.33 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.32 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.31 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.31 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.31 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.29 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.29 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.28 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.27 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.26 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.25 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.25 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.25 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.25 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.24 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.24 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.24 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.23 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.22 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.21 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.2 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.17 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.16 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.16 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.16 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.15 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.1 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.08 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.08 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.07 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.06 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.06 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.05 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.04 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.01 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.0 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.0 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.0 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.98 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.97 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 97.97 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.94 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.9 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.89 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 97.88 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.86 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.85 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.84 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.82 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.81 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.81 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.8 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.79 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.79 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.77 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.74 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.73 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.72 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.71 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.71 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.69 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.68 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.67 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.66 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.64 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.63 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.61 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.61 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.59 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.58 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.57 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.56 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.4 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.37 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 97.33 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.33 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.24 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.18 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.12 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.12 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.87 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.83 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.82 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.82 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.74 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 96.73 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.7 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.66 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.47 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.36 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.36 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.93 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.92 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.48 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.2 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.05 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.0 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.9 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.39 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 94.14 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.92 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 93.82 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 93.23 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 92.15 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 91.61 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 90.2 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 89.49 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 89.26 | |
| 2qx5_A | 661 | Nucleoporin NIC96; mRNA transport, nuclear pore co | 86.17 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 85.35 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 83.85 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 83.3 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 82.3 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 82.21 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 80.48 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 80.24 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 80.01 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-41 Score=392.73 Aligned_cols=517 Identities=10% Similarity=-0.080 Sum_probs=366.6
Q ss_pred CCCCCCcchhhhhhhccC-CCCcchhHHHHHHHhcCChHHHHHHHHHhhcCCCChhhHHHHHHHHhccCChhHHHHHHHH
Q 047408 43 HSSCTINPISASISKTLV-CKTKNYNAEIGRFCEVGNLEKAMEVLYSSEKSKIDTKTYCSILQLCADLKSLEDGKKVHSI 121 (830)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 121 (830)
++.++....++..++..+ +++..|+.++..+.+.|++++|+.+|++|....|++.++..++.+|...|++++|..++..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 142 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTK 142 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 344555555555666555 5667788888888888888888888887776666666777777777788888888877776
Q ss_pred HHHhCCCCCccchHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcccH
Q 047408 122 ICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNKIDNGKVFIWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTF 201 (830)
Q Consensus 122 ~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 201 (830)
+... .++ +.+++.++.+|.++|++++|+++|+++...+.. ..++.+.+..
T Consensus 143 ~~~~--~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~---------------------- 192 (597)
T 2xpi_A 143 EDLY--NRS-SACRYLAAFCLVKLYDWQGALNLLGETNPFRKD-----EKNANKLLMQ---------------------- 192 (597)
T ss_dssp TCGG--GTC-HHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---------------CC----------------------
T ss_pred Hhcc--ccc-hhHHHHHHHHHHHHhhHHHHHHHHhccCCcccc-----cccccccccc----------------------
Confidence 6442 233 777777888888888888888888754322200 0000000000
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCC
Q 047408 202 SCVLKCLAVVGNSRRVKDAHKLFDELSDRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCG 281 (830)
Q Consensus 202 ~~ll~~~~~~g~~~~~~~A~~lf~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~ 281 (830)
+.-...+..+|+.++.+|.+.|++++|+++|++|.+. .|+..+....+..+....
T Consensus 193 -----------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~ 247 (597)
T 2xpi_A 193 -----------------------DGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV--DAKCYEAFDQLVSNHLLT 247 (597)
T ss_dssp -----------------------CSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCSC
T ss_pred -----------------------ccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHhhccc
Confidence 0001234556677777777777777777777777664 243332222222222111
Q ss_pred ChHHH---HHH-HHHHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCC--CCeehHHHHHHHHHhcCChhHHHHH
Q 047408 282 ALMFG---RAV-HAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGE--RSVVSWTSMIAGYAREGVFDGAIRL 355 (830)
Q Consensus 282 ~~~~~---~~l-~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d~~~~~~li~~~~~~g~~~~A~~l 355 (830)
..... ..+ +..+...+......+++.++.+|.++|++++|.++|+++.+ +|..+|+.++.+|.+.|++++|+++
T Consensus 248 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 327 (597)
T 2xpi_A 248 ADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAI 327 (597)
T ss_dssp HHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred chhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHH
Confidence 11111 111 33333344444556677789999999999999999999988 7999999999999999999999999
Q ss_pred HHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCch
Q 047408 356 FRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIV 435 (830)
Q Consensus 356 ~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~ 435 (830)
|++|.+.+ +.+..++..++.++...|++++|.+++..+.+.. +.+..+++.++.+|.++|++++|.++|+++.+.
T Consensus 328 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 402 (597)
T 2xpi_A 328 TTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--- 402 (597)
T ss_dssp HHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---
Confidence 99998765 3367788888889999999999999999888654 556788888999999999999998888765321
Q ss_pred hHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHH
Q 047408 436 SWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSL 515 (830)
Q Consensus 436 ~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 515 (830)
.+.+..+++.++.+|.+.|++++|.++
T Consensus 403 -----------------------------------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~ 429 (597)
T 2xpi_A 403 -----------------------------------------------------DPQFGPAWIGFAHSFAIEGEHDQAISA 429 (597)
T ss_dssp -----------------------------------------------------CTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred -----------------------------------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 134566788888888888888888888
Q ss_pred hhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhc---
Q 047408 516 FDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYEC--- 589 (830)
Q Consensus 516 f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~--- 589 (830)
|+++. ..+..+|+.++.+|.+.|++++|+++|++|.+.. ..+..++..+...+.+.|++++|.++|+.+....
T Consensus 430 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 508 (597)
T 2xpi_A 430 YTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT 508 (597)
T ss_dssp HHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc
Confidence 88764 4477888888888988999999999999888742 3356688888888889999999999888886432
Q ss_pred CCCCC--cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHH
Q 047408 590 NIEPK--LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYV 665 (830)
Q Consensus 590 ~~~p~--~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~ 665 (830)
+..|+ ..+|..++++|.+.|++++|.+.++++ ...| +..+|..+..+|...|++++|...++++++++|+++..+.
T Consensus 509 ~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 588 (597)
T 2xpi_A 509 QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASD 588 (597)
T ss_dssp CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHH
Confidence 55776 678899999999999999999999886 3345 6788999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 047408 666 LLANVYAE 673 (830)
Q Consensus 666 ~l~~~y~~ 673 (830)
.|+++|..
T Consensus 589 ~l~~~~~~ 596 (597)
T 2xpi_A 589 LLKRALEE 596 (597)
T ss_dssp HHHHTTC-
T ss_pred HHHHHHhc
Confidence 99888864
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-39 Score=380.72 Aligned_cols=464 Identities=9% Similarity=-0.011 Sum_probs=383.1
Q ss_pred CHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 047408 216 RVKDAHKLFDELSDRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALK 295 (830)
Q Consensus 216 ~~~~A~~lf~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~ 295 (830)
....+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..||..++..+..+|...|+++.|..++..+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 145 (597)
T 2xpi_A 68 SFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL 145 (597)
T ss_dssp --------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG
T ss_pred ccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc
Confidence 356677778888888999999999999999999999999999984 568889999999999999999999999998764
Q ss_pred hCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCC-C------------------CeehHHHHHHHHHhcCChhHHHHHH
Q 047408 296 ACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGE-R------------------SVVSWTSMIAGYAREGVFDGAIRLF 356 (830)
Q Consensus 296 ~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-~------------------d~~~~~~li~~~~~~g~~~~A~~l~ 356 (830)
. ++++.+++.++.+|.++|++++|.++|+++.. . ++.+|+.++.+|.+.|++++|+++|
T Consensus 146 ~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 223 (597)
T 2xpi_A 146 Y--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECY 223 (597)
T ss_dssp G--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred c--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3 67889999999999999999999999995433 3 4789999999999999999999999
Q ss_pred HHHHHcCCCCCcchH-HHHHHHhhccCcch--hhhhH-HHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCC-
Q 047408 357 RGMVREGIEPDVYAI-TSILHACACDGLLE--IGKDV-HDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPV- 431 (830)
Q Consensus 357 ~~m~~~g~~pd~~t~-~~ll~a~~~~~~~~--~a~~~-~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~- 431 (830)
++|.+. .|+..+. ..+...+...+..+ .+..+ +..+...+......+++.++.+|.++|++++|.++|+++.+
T Consensus 224 ~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 301 (597)
T 2xpi_A 224 KEALMV--DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL 301 (597)
T ss_dssp HHHHHH--CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG
T ss_pred HHHHHh--CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC
Confidence 999886 3554433 33333222222111 11111 44444445455566677777888888888888888888776
Q ss_pred -CCchhHHHHHH----------HHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHH
Q 047408 432 -KDIVSWNTMIG----------ALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIV 500 (830)
Q Consensus 432 -~~~~~~n~~i~----------al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li 500 (830)
++..+|+.++. |+++|.+|...++.+..++..++.++...|+.++|.+++..+.+.. +.+..+++.++
T Consensus 302 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 380 (597)
T 2xpi_A 302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVG 380 (597)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHH
Confidence 67777877776 7888888877666688889999999999999999999999999654 66889999999
Q ss_pred HHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHH
Q 047408 501 DMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDE 577 (830)
Q Consensus 501 ~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~ 577 (830)
.+|.++|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|++|.+.+ +++..++..++.+|.+.|++++
T Consensus 381 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 459 (597)
T 2xpi_A 381 IYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILL 459 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999874 4578899999999999999999999999999852 3466789999999999999999
Q ss_pred HHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCCHHHHHH
Q 047408 578 GWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-------PVAPD--ATIWGSLLCGCRIHHEVKLAEK 648 (830)
Q Consensus 578 a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-------~~~p~--~~~~~~ll~~~~~~g~~~~a~~ 648 (830)
|.++|+.+.... ..+...|.+++++|.+.|++++|+++|+++ +..|+ ..+|..++.+|..+|++++|+.
T Consensus 460 A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~ 537 (597)
T 2xpi_A 460 ANEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAID 537 (597)
T ss_dssp HHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999998542 235788999999999999999999999988 55787 7899999999999999999999
Q ss_pred HHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 649 VAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 649 ~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
.++++++++|+++..|..|+++|.+.|+|++|.+.++++.+
T Consensus 538 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 538 ALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp HHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998875
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-26 Score=259.34 Aligned_cols=134 Identities=13% Similarity=0.148 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC----CCChhhHHHHHHHHHhcCChHHHHHHHH
Q 047408 473 ALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP----AKDLISWTIMIAGYGMHGFGCDAIATFN 548 (830)
Q Consensus 473 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~----~~d~~~~~~li~~~~~~g~~~~A~~l~~ 548 (830)
.++.|.+++..|.+.|+.||..+||+||++|+++|++++|.++|++|. .||+++||+||.+|++.|+.++|.++|+
T Consensus 85 ~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~ 164 (501)
T 4g26_A 85 GLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDA 164 (501)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHH
Confidence 344444455555555555555555555555555555555555555553 3455555555555555555555555555
Q ss_pred HHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHh
Q 047408 549 DMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSR 607 (830)
Q Consensus 549 ~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r 607 (830)
+|.+.|+.||.+||++|+.+|++.|++++|.++|++|.+. ++.|+..+|+.+++.+..
T Consensus 165 ~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 165 HMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHS
T ss_pred HHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhc
Confidence 5555555555555555555555555555555555555432 555555555555555543
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-26 Score=257.76 Aligned_cols=184 Identities=13% Similarity=0.101 Sum_probs=173.8
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCC---------hHHHHHHHHHHHHhCCCCCch
Q 047408 233 VSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGA---------LMFGRAVHAFALKACFSKEIS 303 (830)
Q Consensus 233 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~---------~~~~~~l~~~~~~~g~~~~~~ 303 (830)
..++.+|.+|++.|++++|+++|++|.+.|++||.+||+++|.+|+..+. ++.|.+++..|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 45788899999999999999999999999999999999999999987654 678999999999999999999
Q ss_pred HHHHHHHHhhcCCChHHHHHHHhhcCC----CCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhh
Q 047408 304 FNNTLLDMYSKCGDLDGAIRVFEKMGE----RSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACA 379 (830)
Q Consensus 304 ~~~~Li~~y~k~g~~~~A~~~f~~m~~----~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 379 (830)
+||+||++|++.|++++|.++|++|.+ ||.++||++|.+|++.|+.++|.++|++|.+.|+.||..||++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999964 7999999999999999999999999999999999999999999999999
Q ss_pred ccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhc
Q 047408 380 CDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKC 416 (830)
Q Consensus 380 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~ 416 (830)
+.|++++|.+++++|.+.|..|+..+|+.|++.|...
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999864
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-24 Score=234.58 Aligned_cols=375 Identities=14% Similarity=0.104 Sum_probs=250.2
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCChhh-HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCC
Q 047408 239 ISGYIANGVAEKGLEVFKEMLNLGFNVDLAT-MVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGD 317 (830)
Q Consensus 239 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~ 317 (830)
...+.+.|++++|++.|.++.+. .|+... +..+...+...|+++.+...+..+++.. +.+...+..+...|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 45567788999999998887764 344332 3233333444555555555554444432 2233444444455555555
Q ss_pred hHHHHHHHhhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc-chHHHHHHHhhccCcchhhhhHHHHHHh
Q 047408 318 LDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDV-YAITSILHACACDGLLEIGKDVHDYIKE 396 (830)
Q Consensus 318 ~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 396 (830)
+++|.+.|+ ++.+. .|+. .++..+..++...|++++|.+.+..+++
T Consensus 83 ~~~A~~~~~-------------------------------~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 129 (388)
T 1w3b_A 83 LQEAIEHYR-------------------------------HALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ 129 (388)
T ss_dssp HHHHHHHHH-------------------------------HHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH
T ss_pred HHHHHHHHH-------------------------------HHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555554 44432 2322 2344444444444444444444444444
Q ss_pred hcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHH
Q 047408 397 NDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALER 476 (830)
Q Consensus 397 ~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~ 476 (830)
.. +.+..++..+...|.+.|++++|.+.|+++...+ +.+..++..+...+...|++++
T Consensus 130 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---------------------p~~~~~~~~l~~~~~~~g~~~~ 187 (388)
T 1w3b_A 130 YN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ---------------------PNFAVAWSNLGCVFNAQGEIWL 187 (388)
T ss_dssp HC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC---------------------TTCHHHHHHHHHHHHTTTCHHH
T ss_pred hC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHHHcCCHHH
Confidence 32 2223344445555555555555555554443221 1122334444444455555555
Q ss_pred HHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047408 477 GREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQA 553 (830)
Q Consensus 477 a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 553 (830)
|...+..+++.. +.+...+..+...|.+.|++++|...|++.. ..+..+|+.+...|...|++++|++.|+++.+
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~- 265 (388)
T 1w3b_A 188 AIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE- 265 (388)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-
Confidence 555555555543 3456778888899999999999999998654 44678899999999999999999999999998
Q ss_pred CCCCCh-hHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 047408 554 GIEPDE-VSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIW 630 (830)
Q Consensus 554 g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~ 630 (830)
..|+. .++..+..++.+.|++++|.+.|+.+... .+++...+..++.++.+.|++++|.+.++++ ...| +..+|
T Consensus 266 -~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 342 (388)
T 1w3b_A 266 -LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH 342 (388)
T ss_dssp -TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHH
T ss_pred -hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 45654 47888889999999999999999998753 2335788999999999999999999999987 4555 47889
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcC
Q 047408 631 GSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEK 676 (830)
Q Consensus 631 ~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 676 (830)
..+...+...|++++|...++++++++|+++..|..++.+|...|+
T Consensus 343 ~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 343 SNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999999999999999999999999999999999887764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=8.6e-24 Score=231.99 Aligned_cols=352 Identities=14% Similarity=0.065 Sum_probs=302.4
Q ss_pred HHHHhhcCCChHHHHHHHhhcCC--C-CeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcc
Q 047408 308 LLDMYSKCGDLDGAIRVFEKMGE--R-SVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLL 384 (830)
Q Consensus 308 Li~~y~k~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~ 384 (830)
+...+.+.|++++|.+.|+.+.. | +...+..+...+.+.|++++|...++...+. -+.+..++..+...+...|++
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCCH
Confidence 34556678999999999987643 4 4556777788889999999999999988775 245667899999999999999
Q ss_pred hhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCcc-cccc
Q 047408 385 EIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGV-TMAC 463 (830)
Q Consensus 385 ~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~-t~~~ 463 (830)
++|...+..+++.. +.+...+..+...|.+.|++++|.+.|+++... .|+.. .+..
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------------------~p~~~~~~~~ 140 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY----------------------NPDLYCVRSD 140 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH----------------------CTTCTHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------CCCcHHHHHH
Confidence 99999999999875 445668999999999999999999999876543 24443 4455
Q ss_pred chhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCCh
Q 047408 464 ILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFG 540 (830)
Q Consensus 464 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~ 540 (830)
+...+...|++++|.+.+..+++.. +.+..+++.+...|.+.|++++|...|+++. ..+...|..+...+...|++
T Consensus 141 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~ 219 (388)
T 1w3b_A 141 LGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIF 219 (388)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Confidence 6667778899999999999999875 4568899999999999999999999999875 44667899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHH
Q 047408 541 CDAIATFNDMRQAGIEPD-EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFI 618 (830)
Q Consensus 541 ~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~ 618 (830)
++|+..|++... +.|+ ..++..+..++...|++++|.+.|+.+.. +.|+ ...|..++.+|.+.|++++|.+.+
T Consensus 220 ~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 294 (388)
T 1w3b_A 220 DRAVAAYLRALS--LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCY 294 (388)
T ss_dssp THHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHh--hCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999988 4675 45788899999999999999999999874 4554 678999999999999999999999
Q ss_pred HhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 619 EMM-PV-APDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 619 ~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
+++ .. +++..+|..+...+...|++++|...+++++++.|+++..+..++.+|.+.|++++|.+.++++.+
T Consensus 295 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 295 NTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 987 23 346889999999999999999999999999999999999999999999999999999999998875
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3.8e-22 Score=223.32 Aligned_cols=318 Identities=11% Similarity=0.035 Sum_probs=239.4
Q ss_pred eehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHH
Q 047408 333 VVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDM 412 (830)
Q Consensus 333 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 412 (830)
...|..+...|.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...+..+++.+ +.+..++..+..+
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 3445555555555566666666665555431 2234445555555555666666666666655554 3346677778888
Q ss_pred HHhcCChHHHHHHHhcCCCCCc------hhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHH
Q 047408 413 YAKCGSMADAESVFNQMPVKDI------VSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILR 486 (830)
Q Consensus 413 y~k~g~~~~A~~~f~~m~~~~~------~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 486 (830)
|.+.|++++|.+.|+++...+. ..|..++..... ..+......+...|++++|...+..+++
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 171 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM------------QRLRSQALNAFGSGDYTAAIAFLDKILE 171 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888888888887765432 233322211000 0011223446778999999999999988
Q ss_pred hCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHH-
Q 047408 487 HGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSF- 562 (830)
Q Consensus 487 ~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~- 562 (830)
.. +.+..++..+..+|.++|++++|.+.|+++. ..+..+|+.+...|...|++++|++.|+++.. ..|+....
T Consensus 172 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~ 248 (450)
T 2y4t_A 172 VC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCF 248 (450)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHH
T ss_pred hC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCChHHHH
Confidence 65 5678899999999999999999999999875 45789999999999999999999999999997 56776653
Q ss_pred HHH------------HHHHHccCCHHHHHHHHHHhHhhcCCCCC-----cchHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 047408 563 ISV------------LYACSHSGLVDEGWRFFNMMRYECNIEPK-----LEHYACMVDLLSRTGNLSEAYRFIEMM-PVA 624 (830)
Q Consensus 563 ~~l------------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~ 624 (830)
..+ ..+|.+.|++++|..+|+.+.. +.|+ ..+|.+++.+|.+.|++++|++.++++ ...
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 325 (450)
T 2y4t_A 249 AHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK---TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME 325 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 333 6889999999999999999985 3454 458999999999999999999999987 445
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 047408 625 P-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANV 670 (830)
Q Consensus 625 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 670 (830)
| +..+|..+..+|...|++++|...++++++++|+++..+..++.+
T Consensus 326 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 326 PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 5 689999999999999999999999999999999999999999843
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=8.8e-21 Score=215.89 Aligned_cols=433 Identities=11% Similarity=-0.008 Sum_probs=304.7
Q ss_pred chHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHh
Q 047408 233 VSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMY 312 (830)
Q Consensus 233 ~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y 312 (830)
..|......+.+.|++++|++.|+++.... ||..++..+..++...|+++.|...+..+++.. +.+...+..+..+|
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 346667788889999999999999998864 788888888888888888888888888887764 34556777788888
Q ss_pred hcCCChHHHHHHHhhcCC---CCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhh
Q 047408 313 SKCGDLDGAIRVFEKMGE---RSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKD 389 (830)
Q Consensus 313 ~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~ 389 (830)
.+.|++++|...|+++.. .+......++..+........+.+.+..+...+..|+...+..-...............
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 888888888888877643 23334444444444433333333333332222222222211111110111111111111
Q ss_pred HHHHHHhhcC---------CCchhhHHHHHHHHHh---cCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCC---
Q 047408 390 VHDYIKENDM---------QSSLYVSNALMDMYAK---CGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNF--- 454 (830)
Q Consensus 390 ~~~~~~~~g~---------~~~~~~~~~Li~~y~k---~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~--- 454 (830)
+...+..... +.+...+..+...+.. .|++++|...|+++.. .+.......
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--------------~~~~~~~~~~~~ 229 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAAR--------------LFEEQLDKNNED 229 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHH--------------HHHHHTTTSTTC
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHH--------------HhhhhhccCccc
Confidence 1111111100 2234445445555554 8999999999887543 111110000
Q ss_pred ----CCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhH
Q 047408 455 ----EPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISW 527 (830)
Q Consensus 455 ----~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~ 527 (830)
+.+..++..+...+...|++++|...+..+++.... ..++..+...|.+.|++++|...|+++. ..+...|
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 307 (514)
T 2gw1_A 230 EKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVY 307 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHH
T ss_pred cccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHH
Confidence 112345666777788899999999999999987643 8889999999999999999999999764 3467889
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHH
Q 047408 528 TIMIAGYGMHGFGCDAIATFNDMRQAGIEPD-EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLL 605 (830)
Q Consensus 528 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l 605 (830)
..+...|...|++++|+..|+++.+. .|+ ..++..+...+...|++++|..+|+.+... .| +...+..+...|
T Consensus 308 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~ 382 (514)
T 2gw1_A 308 YHRGQMNFILQNYDQAGKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAKRK---FPEAPEVPNFFAEIL 382 (514)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---cccCHHHHHHHHHHH
Confidence 99999999999999999999999984 454 457888889999999999999999998754 34 467889999999
Q ss_pred HhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhh
Q 047408 606 SRTGNLSEAYRFIEMM----PVAPD----ATIWGSLLCGCRI---HHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEA 674 (830)
Q Consensus 606 ~r~g~~~eA~~~~~~m----~~~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 674 (830)
.+.|++++|.+.++++ |..|+ ..+|..+...+.. .|++++|...+++++++.|+++..+..++.+|...
T Consensus 383 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 462 (514)
T 2gw1_A 383 TDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQ 462 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence 9999999999999887 33333 3489999999999 99999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHh
Q 047408 675 EKWEEVKKLREKISR 689 (830)
Q Consensus 675 g~~~~A~~~~~~m~~ 689 (830)
|++++|.+.+++..+
T Consensus 463 g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 463 EDIDEAITLFEESAD 477 (514)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999988875
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.87 E-value=8.5e-20 Score=207.72 Aligned_cols=437 Identities=11% Similarity=-0.007 Sum_probs=273.5
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHhhCC---CCCcchHHHHHHH
Q 047408 165 IWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRRVKDAHKLFDELS---DRDVVSWNCMISG 241 (830)
Q Consensus 165 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~A~~lf~~m~---~~~~~~~n~li~~ 241 (830)
.|..+...+.+.|++++|+..|+++.... ||...+..+..++...| +.++|...|++.. +.+..+|..+...
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVG---DLKKVVEMSTKALELKPDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHh---hHHHHHHHHHHHhccChHHHHHHHHHHHH
Confidence 34555566666777777777777766654 56666666666666666 4666666666543 3456788888899
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHH---HHHHhhcCCCh
Q 047408 242 YIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNT---LLDMYSKCGDL 318 (830)
Q Consensus 242 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~---Li~~y~k~g~~ 318 (830)
|.+.|++++|+..|+++...+ +++......++..+..........+..+.+.+.+..++....+. ...........
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 999999999999999988765 23444444444433322211111111111111110000000000 00000011111
Q ss_pred HHHHHHHhhcC---------CC-CeehHHHHHHHHHh---cCChhHHHHHHHHHHH-----cCCCCC--------cchHH
Q 047408 319 DGAIRVFEKMG---------ER-SVVSWTSMIAGYAR---EGVFDGAIRLFRGMVR-----EGIEPD--------VYAIT 372 (830)
Q Consensus 319 ~~A~~~f~~m~---------~~-d~~~~~~li~~~~~---~g~~~~A~~l~~~m~~-----~g~~pd--------~~t~~ 372 (830)
..+...+.... .| +...|......+.. .|++++|+.+|+++.. ..-.|+ ..++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE 241 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence 11111111111 11 12333334444443 6778888888877766 211222 22344
Q ss_pred HHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHh
Q 047408 373 SILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQ 452 (830)
Q Consensus 373 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~ 452 (830)
.+...+...|+++.|...+..+++.... ..++..+...|.+.|++++|...|+..
T Consensus 242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~----------------------- 296 (514)
T 2gw1_A 242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKA----------------------- 296 (514)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHH-----------------------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHH-----------------------
Confidence 4444555555666666655555554422 455555555555555555555555443
Q ss_pred CCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHH
Q 047408 453 NFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTI 529 (830)
Q Consensus 453 ~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~ 529 (830)
++.. +.+..++..+...|.+.|++++|...|++.. ..+...|..
T Consensus 297 --------------------------------~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 343 (514)
T 2gw1_A 297 --------------------------------LKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQ 343 (514)
T ss_dssp --------------------------------HTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHH
T ss_pred --------------------------------hhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHH
Confidence 3322 3355677788888888999999998888753 446778899
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC----cchHHHHHHH
Q 047408 530 MIAGYGMHGFGCDAIATFNDMRQAGIEPD-EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK----LEHYACMVDL 604 (830)
Q Consensus 530 li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lv~~ 604 (830)
+...|...|++++|++.|+++.+. .|+ ..++..+...+...|++++|.++|+.+.....-.|. ...+..+...
T Consensus 344 l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 421 (514)
T 2gw1_A 344 LACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATL 421 (514)
T ss_dssp HHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHH
Confidence 999999999999999999999874 444 457888888999999999999999988754322232 3388999999
Q ss_pred HHh---cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 047408 605 LSR---TGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLL 667 (830)
Q Consensus 605 l~r---~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 667 (830)
|.+ .|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++++|+++..+..+
T Consensus 422 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 422 LTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 999 99999999999886 3344 578899999999999999999999999999999988776665
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-19 Score=206.39 Aligned_cols=426 Identities=12% Similarity=0.052 Sum_probs=306.6
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHH
Q 047408 232 VVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDM 311 (830)
Q Consensus 232 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~ 311 (830)
...|..+...+.+.|++++|++.|+++.... +.+...+..+..++...|+++.|.+.+..+++.. +.+...+..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4567778888999999999999999998753 2356677778888888999999999999888875 4466777888899
Q ss_pred hhcCCChHHHHHHHhhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHc------CCCCCcchHHHHHHHhhccCcch
Q 047408 312 YSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFRGMVRE------GIEPDVYAITSILHACACDGLLE 385 (830)
Q Consensus 312 y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~pd~~t~~~ll~a~~~~~~~~ 385 (830)
|.+.|+.++|.+.|+.+. .+....+..+..+...+...+|+..++++... ...|+...+...+ ...+.+
T Consensus 103 ~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFF----GIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHH----HTSCHH
T ss_pred HHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHH----HhcChH
Confidence 999999999999997543 22223344455666677778899999888653 1233333333322 222222
Q ss_pred hhhhHHHHHHhhcCCCchhhHHHHHHHHHhc--------CChHHHHHHHhcCCCCCch---hHHHHHHHHHHHHHHHhCC
Q 047408 386 IGKDVHDYIKENDMQSSLYVSNALMDMYAKC--------GSMADAESVFNQMPVKDIV---SWNTMIGALDLFVAMLQNF 454 (830)
Q Consensus 386 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~--------g~~~~A~~~f~~m~~~~~~---~~n~~i~al~~f~~m~~~~ 454 (830)
.+...+....... .........+...|... |++++|..+|+++.+.+.- .|..+
T Consensus 178 ~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~-------------- 242 (537)
T 3fp2_A 178 LEVSSVNTSSNYD-TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENA-------------- 242 (537)
T ss_dssp HHHHTSCCCCSSC-SSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHH--------------
T ss_pred HHHHHHhhccccc-cHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHH--------------
Confidence 2222221111110 11111334444443322 4677777777776554321 00000
Q ss_pred CCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHH
Q 047408 455 EPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMI 531 (830)
Q Consensus 455 ~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li 531 (830)
..++..+...+...|++++|...+..+++.. |+..++..+...|.+.|++++|...|+++. ..+..+|..+.
T Consensus 243 ---~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 317 (537)
T 3fp2_A 243 ---ALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRG 317 (537)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 1134445556677889999999999999875 457888999999999999999999999764 45678999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcC
Q 047408 532 AGYGMHGFGCDAIATFNDMRQAGIEPD-EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTG 609 (830)
Q Consensus 532 ~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g 609 (830)
..|...|++++|++.|++..+. .|+ ...+..+...+...|++++|.++|+.+... .| +...+..+...|.+.|
T Consensus 318 ~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g 392 (537)
T 3fp2_A 318 QMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLK---FPTLPEVPTFFAEILTDRG 392 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCTHHHHHHHHHHHHTT
T ss_pred HHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhC
Confidence 9999999999999999999984 455 457888889999999999999999998754 34 4678899999999999
Q ss_pred CHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 047408 610 NLSEAYRFIEMM----PVAPD----ATIWGSLLCGCRIH----------HEVKLAEKVAEHVFELEPDNTGYYVLLANVY 671 (830)
Q Consensus 610 ~~~eA~~~~~~m----~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 671 (830)
++++|.+.++++ |..++ ...+..+...+... |++++|...++++++.+|+++..+..++.+|
T Consensus 393 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 472 (537)
T 3fp2_A 393 DFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLK 472 (537)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999886 21121 22344455667777 9999999999999999999999999999999
Q ss_pred hhhcCHHHHHHHHHHHHh
Q 047408 672 AEAEKWEEVKKLREKISR 689 (830)
Q Consensus 672 ~~~g~~~~A~~~~~~m~~ 689 (830)
...|++++|.+.++...+
T Consensus 473 ~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 473 LQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 999999999999998875
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.82 E-value=7.3e-19 Score=196.52 Aligned_cols=297 Identities=13% Similarity=0.066 Sum_probs=250.4
Q ss_pred CCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHH
Q 047408 366 PDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALD 445 (830)
Q Consensus 366 pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~ 445 (830)
.+...+..+...+...|++++|..++..+++.. +.+..++..+...|.+.|++++|...|+++.+.+
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------ 90 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK------------ 90 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------------
Confidence 345667778888999999999999999999875 5578899999999999999999999998875443
Q ss_pred HHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCch---hHHhHH------------HHHHHhcCCHH
Q 047408 446 LFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADR---NVANAI------------VDMYVKCGVLV 510 (830)
Q Consensus 446 ~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~---~~~~~L------------i~~y~k~g~~~ 510 (830)
+.+..++..+..++...|++++|.+.+..+.+.. +.+. ..+..+ ...|.+.|+++
T Consensus 91 ---------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 160 (450)
T 2y4t_A 91 ---------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT 160 (450)
T ss_dssp ---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ---------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 2345567778888899999999999999998754 3344 555555 44499999999
Q ss_pred HHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHh
Q 047408 511 LARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRY 587 (830)
Q Consensus 511 ~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 587 (830)
+|...|+++. ..+...|..+...|.+.|++++|++.|+++.+.. +.+..++..+...+...|++++|..+|+.+..
T Consensus 161 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 239 (450)
T 2y4t_A 161 AAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239 (450)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999865 4578899999999999999999999999998842 33556889999999999999999999999973
Q ss_pred hcCCCCC-cchHHHH------------HHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHH
Q 047408 588 ECNIEPK-LEHYACM------------VDLLSRTGNLSEAYRFIEMM-PVAPD-----ATIWGSLLCGCRIHHEVKLAEK 648 (830)
Q Consensus 588 ~~~~~p~-~~~y~~l------------v~~l~r~g~~~eA~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~ 648 (830)
+.|+ ...+..+ +..+.+.|++++|.+.++++ ...|+ ...|..+...+...|++++|+.
T Consensus 240 ---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 316 (450)
T 2y4t_A 240 ---LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIR 316 (450)
T ss_dssp ---HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred ---hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 4565 3334444 88999999999999999987 34454 3478888899999999999999
Q ss_pred HHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 649 VAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 649 ~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
.++++++++|+++..+..++.+|...|++++|.+.++.+.+
T Consensus 317 ~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 317 VCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998875
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.81 E-value=8.1e-18 Score=192.62 Aligned_cols=205 Identities=10% Similarity=0.005 Sum_probs=153.0
Q ss_pred ccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHH
Q 047408 458 GVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGY 534 (830)
Q Consensus 458 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~ 534 (830)
..++..+...+...|+++.|...+..+++.. +.+..++..+...|.+.|++++|...|++.. ..+...|..+...|
T Consensus 276 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 354 (537)
T 3fp2_A 276 PNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLL 354 (537)
T ss_dssp HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3344444455555566666666666665544 3456778888888888899998888888764 34567888899999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhc-
Q 047408 535 GMHGFGCDAIATFNDMRQAGIEPDE-VSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK----LEHYACMVDLLSRT- 608 (830)
Q Consensus 535 ~~~g~~~~A~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lv~~l~r~- 608 (830)
...|++++|++.|+++.+. .|+. ..+..+...+...|++++|.+.|+.+.....-.+. ...+..+..+|.+.
T Consensus 355 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 432 (537)
T 3fp2_A 355 YKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQS 432 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999884 4554 47778888899999999999999887643221121 22244556777777
Q ss_pred ---------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHH
Q 047408 609 ---------GNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYV 665 (830)
Q Consensus 609 ---------g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~ 665 (830)
|++++|.+.+++. ...| +..+|..+...+...|++++|...+++++++.|+++....
T Consensus 433 ~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 433 SQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp TC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred hccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 9999999999987 3344 5788999999999999999999999999999999876544
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.3e-17 Score=174.25 Aligned_cols=329 Identities=13% Similarity=0.062 Sum_probs=224.9
Q ss_pred ehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHH
Q 047408 334 VSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMY 413 (830)
Q Consensus 334 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y 413 (830)
..|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+++.|...+..+++.. +.+..++..+...|
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHH
Confidence 356666677777777777777777776642 2234556666667777777777777777777664 34567788889999
Q ss_pred HhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCch
Q 047408 414 AKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADR 493 (830)
Q Consensus 414 ~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~ 493 (830)
.+.|++++|...|++....+...- +.... ....+.+.. .
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~-------------------~~~~~------~~~l~~~~~----------------~ 120 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQ-------------------EEKEA------ESQLVKADE----------------M 120 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHH-------------------HHHHH------HHHHHHHHH----------------H
T ss_pred HHcCChHHHHHHHHHHHhcCCccc-------------------ChHHH------HHHHHHHHH----------------H
Confidence 999999999999988755432000 10000 000000000 1
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHH
Q 047408 494 NVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPD-EVSFISVLYAC 569 (830)
Q Consensus 494 ~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~ 569 (830)
.....+...|...|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++.+. .|+ ..++..+...+
T Consensus 121 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~ 198 (359)
T 3ieg_A 121 QRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLY 198 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 112334556677777777777777653 345566777777777777777777777777763 343 34566666777
Q ss_pred HccCCHHHHHHHHHHhHhhcCCCCCc-chH------------HHHHHHHHhcCCHHHHHHHHHhC-CCCCC-H----HHH
Q 047408 570 SHSGLVDEGWRFFNMMRYECNIEPKL-EHY------------ACMVDLLSRTGNLSEAYRFIEMM-PVAPD-A----TIW 630 (830)
Q Consensus 570 ~~~g~~~~a~~~~~~m~~~~~~~p~~-~~y------------~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~----~~~ 630 (830)
...|++++|.+.|+..... .|+. ..+ ..++..+.+.|++++|.+.++++ ...|+ . ..|
T Consensus 199 ~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 275 (359)
T 3ieg_A 199 YQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSK 275 (359)
T ss_dssp HHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 7777777777777776632 3332 212 13367788999999999999886 33343 3 235
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCcCCCceeEEEECCEEEEE
Q 047408 631 GSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIEIKGKVNIF 710 (830)
Q Consensus 631 ~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~~~swi~~~~~~~~f 710 (830)
..+...+...|++++|...++++++++|+++..+..++.+|...|++++|.+.++.+.+
T Consensus 276 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--------------------- 334 (359)
T 3ieg_A 276 ERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--------------------- 334 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---------------------
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---------------------
Confidence 56777889999999999999999999999999999999999999999999999988874
Q ss_pred EeCCcCCCChhHHHHHHHHHHHHHHH
Q 047408 711 VAGGSSHPHAKKIESLLKRLRLEMKR 736 (830)
Q Consensus 711 ~~~~~~~p~~~~i~~~l~~l~~~~~~ 736 (830)
..|...++...|.++...+++
T Consensus 335 -----~~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 335 -----HNENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp -----TCTTCHHHHHHHHHHHHHHHH
T ss_pred -----cCCCChHHHHHHHHHHHHHHH
Confidence 346666777777777766654
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-18 Score=184.55 Aligned_cols=304 Identities=15% Similarity=0.158 Sum_probs=151.1
Q ss_pred hcCCChHHHHHHHhhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHH
Q 047408 313 SKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHD 392 (830)
Q Consensus 313 ~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~ 392 (830)
-++|++++|.++++++..|+ +|..++.++.+.|++++|++.|.+ .+|..+|..++.+|...|++++|...+.
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 37799999999999997665 999999999999999999999976 3688899999999999999999999888
Q ss_pred HHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchh
Q 047408 393 YIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLA 472 (830)
Q Consensus 393 ~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~ 472 (830)
...+. .+++.+.+.|+.+|.|+|+++++.++++ .|+..++..+...|...|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---------------------------~pn~~a~~~IGd~~~~~g 136 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN---------------------------GPNNAHIQQVGDRCYDEK 136 (449)
T ss_dssp -------------------------CHHHHTTTTT---------------------------CC----------------
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---------------------------CCcHHHHHHHHHHHHHcC
Confidence 88774 4567889999999999999999998875 266779999999999999
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047408 473 ALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQ 552 (830)
Q Consensus 473 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 552 (830)
.++.|+..+..+ ..|..|++.|.+.|++++|.+.+.++. ++.+|..++.+|...|+++.|......+.
T Consensus 137 ~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~- 204 (449)
T 1b89_A 137 MYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHIV- 204 (449)
T ss_dssp CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-
T ss_pred CHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHHH-
Confidence 999999999866 478999999999999999999999983 89999999999999999999966655432
Q ss_pred cCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHh--cCCHHHHHHHHHh-CCCCC---
Q 047408 553 AGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSR--TGNLSEAYRFIEM-MPVAP--- 625 (830)
Q Consensus 553 ~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r--~g~~~eA~~~~~~-m~~~p--- 625 (830)
+.|+. ...++..|.+.|.++++..+++... ++.+. ...|+.|.-+|++ -|++.|.+++|.+ +.++|
T Consensus 205 --~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL---~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~ 277 (449)
T 1b89_A 205 --VHADE--LEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLR 277 (449)
T ss_dssp --TCHHH--HHHHHHHHHHTTCHHHHHHHHHHHT---TSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHH
T ss_pred --hCHhh--HHHHHHHHHHCCCHHHHHHHHHHHh---CCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHH
Confidence 45555 4467888999999999999998876 56553 5677888777775 5678888887754 34444
Q ss_pred ---CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc------------CCCCcchHHHHHHHHh
Q 047408 626 ---DATIWGSLLCGCRIHHEVKLAEKVAEHVFEL------------EPDNTGYYVLLANVYA 672 (830)
Q Consensus 626 ---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l------------~p~~~~~~~~l~~~y~ 672 (830)
+...|.-+...|...++++.|....-+-... .|.|...|...++-|.
T Consensus 278 ~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl 339 (449)
T 1b89_A 278 AAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL 339 (449)
T ss_dssp HHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH
Confidence 4568999999999999999887754333222 4666777766666665
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-16 Score=170.72 Aligned_cols=310 Identities=12% Similarity=0.046 Sum_probs=222.6
Q ss_pred HHHHHHHHhhcCCChHHHHHHHhhcCC---CCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhc
Q 047408 304 FNNTLLDMYSKCGDLDGAIRVFEKMGE---RSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACAC 380 (830)
Q Consensus 304 ~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 380 (830)
.+..+...|.+.|++++|...|+++.. .+...|..+...|...|++++|+..|+++.+.. +-+...+..+...+..
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHH
Confidence 344555666666777777777766532 245566667777777777777777777776542 1134455666666677
Q ss_pred cCcchhhhhHHHHHHhhcCC--CchhhHHHH------------HHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHH
Q 047408 381 DGLLEIGKDVHDYIKENDMQ--SSLYVSNAL------------MDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDL 446 (830)
Q Consensus 381 ~~~~~~a~~~~~~~~~~g~~--~~~~~~~~L------------i~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~ 446 (830)
.|++++|...+..+.+.... .+..++..+ ...|...|++++|...|
T Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~-------------------- 143 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFL-------------------- 143 (359)
T ss_dssp HTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH--------------------
T ss_pred cCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH--------------------
Confidence 77777777777776655310 233333333 34445555555555544
Q ss_pred HHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCC
Q 047408 447 FVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKD 523 (830)
Q Consensus 447 f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d 523 (830)
..+.+.. +.+..++..+...|.+.|++++|...|++.. ..+
T Consensus 144 -----------------------------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 187 (359)
T 3ieg_A 144 -----------------------------------DKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDN 187 (359)
T ss_dssp -----------------------------------HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCC
T ss_pred -----------------------------------HHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 4444433 3456778888899999999999999998764 446
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhH-HH------------HHHHHHHccCCHHHHHHHHHHhHhhcC
Q 047408 524 LISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVS-FI------------SVLYACSHSGLVDEGWRFFNMMRYECN 590 (830)
Q Consensus 524 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t-~~------------~ll~a~~~~g~~~~a~~~~~~m~~~~~ 590 (830)
...|..+...|...|++++|++.|++..+ ..|+... +. .+...+.+.|++++|...++.+...
T Consensus 188 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-- 263 (359)
T 3ieg_A 188 TEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT-- 263 (359)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--
Confidence 78899999999999999999999999988 4555443 22 2355688999999999999998754
Q ss_pred CCCCc-----chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcch
Q 047408 591 IEPKL-----EHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGY 663 (830)
Q Consensus 591 ~~p~~-----~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 663 (830)
.|+. ..+..+...|.+.|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++++|+++..
T Consensus 264 -~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 342 (359)
T 3ieg_A 264 -EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQI 342 (359)
T ss_dssp -CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred -CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHH
Confidence 3442 33556889999999999999999987 3445 67899999999999999999999999999999999988
Q ss_pred HHHHHHHHhhhc
Q 047408 664 YVLLANVYAEAE 675 (830)
Q Consensus 664 ~~~l~~~y~~~g 675 (830)
+..|..++...+
T Consensus 343 ~~~l~~~~~~~~ 354 (359)
T 3ieg_A 343 REGLEKAQRLLK 354 (359)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888877766544
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.6e-16 Score=166.28 Aligned_cols=287 Identities=9% Similarity=-0.023 Sum_probs=213.5
Q ss_pred CCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHH
Q 047408 331 RSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALM 410 (830)
Q Consensus 331 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li 410 (830)
.+...+..+...+...|++++|+++|+++.... +.+...+..+...+...|++++|..++..+++.. +.+..++..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 355667777888888888888888888887653 2234455556667777788888888887777764 34566777777
Q ss_pred HHHHhcC-ChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCC
Q 047408 411 DMYAKCG-SMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGI 489 (830)
Q Consensus 411 ~~y~k~g-~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~ 489 (830)
..|...| ++++|...|++....+
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-------------------------------------------------------- 121 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-------------------------------------------------------- 121 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC--------------------------------------------------------
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC--------------------------------------------------------
Confidence 7777777 7777777776654332
Q ss_pred CCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHH
Q 047408 490 SADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPD-EVSFISV 565 (830)
Q Consensus 490 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~l 565 (830)
+.+...+..+...|.+.|++++|...|++.. ..+...|..+...|...|++++|++.|++..+. .|+ ...+..+
T Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l 199 (330)
T 3hym_B 122 KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI--APEDPFVMHEV 199 (330)
T ss_dssp TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CCCChHHHHHH
Confidence 2345566777777888888888888887654 334567777888888888888888888888773 444 3467777
Q ss_pred HHHHHccCCHHHHHHHHHHhHhhcC-------CCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 047408 566 LYACSHSGLVDEGWRFFNMMRYECN-------IEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCG 636 (830)
Q Consensus 566 l~a~~~~g~~~~a~~~~~~m~~~~~-------~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~ 636 (830)
...+...|++++|..+|+.+..... .......+..+..+|.+.|++++|.+.+++. ...| +..+|..+...
T Consensus 200 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 279 (330)
T 3hym_B 200 GVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYI 279 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHH
Confidence 7888888888888888887764321 1233568888999999999999999998886 3334 56788889999
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH-hhhcCH
Q 047408 637 CRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVY-AEAEKW 677 (830)
Q Consensus 637 ~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y-~~~g~~ 677 (830)
+...|++++|...++++++++|+++..+..++..| ...|+.
T Consensus 280 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 280 HSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 99999999999999999999999999999999988 455553
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.7e-16 Score=163.73 Aligned_cols=262 Identities=12% Similarity=0.044 Sum_probs=218.2
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHH
Q 047408 400 QSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGRE 479 (830)
Q Consensus 400 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~ 479 (830)
+.+..++..+...+...|++++|.++|+++...+ +.+...+..+...+...|+.++|..
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---------------------p~~~~~~~~~~~~~~~~~~~~~A~~ 77 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD---------------------PFHASCLPVHIGTLVELNKANELFY 77 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------TTCTTTHHHHHHHHHHHTCHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------------------CCChhhHHHHHHHHHHhhhHHHHHH
Confidence 4556677778888888888888888887765443 1333444456667778888888888
Q ss_pred HHHHHHHhCCCCchhHHhHHHHHHHhcC-CHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 047408 480 IHGYILRHGISADRNVANAIVDMYVKCG-VLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGI 555 (830)
Q Consensus 480 i~~~~~~~g~~~~~~~~~~Li~~y~k~g-~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 555 (830)
.+..+++.. +.+..++..+...|...| ++++|...|++.. ..+...|..+...|...|++++|++.|+++.+.
T Consensus 78 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-- 154 (330)
T 3hym_B 78 LSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL-- 154 (330)
T ss_dssp HHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--
Confidence 888888764 456788899999999999 9999999999764 346778999999999999999999999999985
Q ss_pred CCC-hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CC---------
Q 047408 556 EPD-EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PV--------- 623 (830)
Q Consensus 556 ~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~--------- 623 (830)
.|+ ...+..+...+...|++++|.++|+.+. .+.| +...+..+...|.+.|++++|.+.+++. ..
T Consensus 155 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 231 (330)
T 3hym_B 155 MKGCHLPMLYIGLEYGLTNNSKLAERFFSQAL---SIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT 231 (330)
T ss_dssp TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH---TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCT
T ss_pred ccccHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccc
Confidence 444 4567778889999999999999999987 3445 4678899999999999999999999876 11
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 624 -APDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 624 -~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
+.+..+|..+...+...|++++|...+++++++.|+++..+..++.+|...|++++|.+.+++..
T Consensus 232 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 232 VDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp TTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 23457899999999999999999999999999999999999999999999999999999987654
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.71 E-value=8e-13 Score=156.55 Aligned_cols=532 Identities=11% Similarity=0.065 Sum_probs=319.0
Q ss_pred hHHHHHHHhcCChHHHHHHHHHhhcCCCCh-----hhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCccchHHHHHHH
Q 047408 67 NAEIGRFCEVGNLEKAMEVLYSSEKSKIDT-----KTYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLGSKLVFM 141 (830)
Q Consensus 67 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li~~ 141 (830)
...+.+|...|.+.+|++++++.... +.+ +.-+.++....+. +...+......+. .+....+...
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~-~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd--------~~d~~eIA~I 1058 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLD-NSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD--------NYDAPDIANI 1058 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcC-CCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh--------hccHHHHHHH
Confidence 34566777778888888888777633 221 2333444444444 4444444443332 1223445666
Q ss_pred HHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHH
Q 047408 142 FVTCGDLKEGRRVFNKIDNGKVFIWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRRVKDAH 221 (830)
Q Consensus 142 y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~A~ 221 (830)
+...|.+++|..+|++... .....+.++. ..+++++|.++.++. -++.+|..+-.++...| ++++|.
T Consensus 1059 ai~lglyEEAf~IYkKa~~-~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G---~~kEAI 1125 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFDV-NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKG---MVKEAI 1125 (1630)
T ss_pred HHhCCCHHHHHHHHHHcCC-HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCC---CHHHHH
Confidence 6777888888888887641 1122233322 567777777777754 23567777777777777 588888
Q ss_pred HHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCC
Q 047408 222 KLFDELSDRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKACFSKE 301 (830)
Q Consensus 222 ~lf~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~ 301 (830)
..|.+. .|...|.-++..+.+.|++++|++.|..-++.. ++....+.+.-++++.++++...... + .++
T Consensus 1126 dsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n 1194 (1630)
T 1xi4_A 1126 DSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPN 1194 (1630)
T ss_pred HHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCC
Confidence 888664 566777778888888888888888887666543 33333334777777777766433332 1 334
Q ss_pred chHHHHHHHHhhcCCChHHHHHHHhhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhcc
Q 047408 302 ISFNNTLLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACD 381 (830)
Q Consensus 302 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 381 (830)
...+..+.+.|...|++++|..+|... ..|..+...|++.|++++|++.+++. -+..+|..+-.+|...
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~ 1263 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDG 1263 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhh
Confidence 445556778888888888888888875 37888888888888888888888776 3457777777888888
Q ss_pred CcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCcccc
Q 047408 382 GLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTM 461 (830)
Q Consensus 382 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~ 461 (830)
|++..|...... +..+...+..++..|.+.|.+++|..+++.....+.. ....+|.
T Consensus 1264 ~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Lera-------------------H~gmftE 1319 (1630)
T 1xi4_A 1264 KEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERA-------------------HMGMFTE 1319 (1630)
T ss_pred hHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChh-------------------HhHHHHH
Confidence 887777765443 2334556678899999999999999999876544321 1222333
Q ss_pred ccchhhhcchhhHHHHHHHHHHHHHhCCC------CchhHHhHHHHHHHhcCCHHHHHHHh--------h-----hC--C
Q 047408 462 ACILPACASLAALERGREIHGYILRHGIS------ADRNVANAIVDMYVKCGVLVLARSLF--------D-----MI--P 520 (830)
Q Consensus 462 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~------~~~~~~~~Li~~y~k~g~~~~A~~~f--------~-----~m--~ 520 (830)
...+-+-.+.+++.+..+.|..-+ .++ .+...|.-++-.|.+-|+++.|.... + .. .
T Consensus 1320 LaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~k 1397 (1630)
T 1xi4_A 1320 LAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK 1397 (1630)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcc
Confidence 444444455666666666554322 222 25678889999999999999988322 2 11 1
Q ss_pred CCChhhHHHHHHHHHhcC---------------ChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHh
Q 047408 521 AKDLISWTIMIAGYGMHG---------------FGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMM 585 (830)
Q Consensus 521 ~~d~~~~~~li~~~~~~g---------------~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m 585 (830)
..|+..|...+.-|..++ +.+++.++|.+. |.-|-..-|..-+. -.+...+.+|.. +.|
T Consensus 1398 v~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~~---~~l~lik~yl~~vq-~~n~~~Vneal~--el~ 1471 (1630)
T 1xi4_A 1398 VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKV---KQLPLVKPYLRSVQ-NHNNKSVNESLN--NLF 1471 (1630)
T ss_pred cccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHHc---CChHHhHHHHHHHH-HhcchhhhHHHH--HHh
Confidence 336677777777777555 555555555421 11121111111111 001111111110 001
Q ss_pred HhhcC-------------C---------CC-CcchHHHH-HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 047408 586 RYECN-------------I---------EP-KLEHYACM-VDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHH 641 (830)
Q Consensus 586 ~~~~~-------------~---------~p-~~~~y~~l-v~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g 641 (830)
..+-+ + +- ...-+--+ ..+|.+.|+|++|.+++++.+.. .--+.+....|
T Consensus 1472 ieeed~~~Lr~si~~~~nfd~~~La~~lekheLl~frrIAa~ly~~n~~~~~ai~l~k~d~l~------~dAm~~a~~S~ 1545 (1630)
T 1xi4_A 1472 ITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSLY------KDAMQYASESK 1545 (1630)
T ss_pred cCccchHHHHHHHhhccCcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCcHHHHHHHHHhccCH------HHHHHHHHHcC
Confidence 00000 0 00 00001112 23455568888888888877643 33356667788
Q ss_pred CHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHH
Q 047408 642 EVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKL 683 (830)
Q Consensus 642 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~ 683 (830)
+.+.++.++.-..+. .+...|+..--.+...=+.|-+.++
T Consensus 1546 d~e~~e~ll~~F~~~--~~~E~f~a~Ly~cy~l~~pd~vle~ 1585 (1630)
T 1xi4_A 1546 DTELAEELLQWFLQE--EKRECFGACLFTCYDLLRPDVVLET 1585 (1630)
T ss_pred CHHHHHHHHHHHHhc--CChhHHHHHHHHHhccCCchHHHHH
Confidence 888888877776666 4455666665666666677766664
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.71 E-value=4.2e-13 Score=158.89 Aligned_cols=338 Identities=14% Similarity=0.107 Sum_probs=224.3
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCCCCeehHHHHHHHHHhcCChhHHH
Q 047408 274 LSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAI 353 (830)
Q Consensus 274 l~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~ 353 (830)
-..|...|.+++|.+++.... ......+.+ +-..|++++|.++.++.. +..+|..+..++.+.|++++|+
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHH
Confidence 334455555566655555531 111111222 225667777777777653 3456778888888888888888
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCC
Q 047408 354 RLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKD 433 (830)
Q Consensus 354 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~ 433 (830)
+.|.+. -|...|..+..+|.+.|+++++.+.+....+.. ++..+.+.++..|+|.+++++.....+
T Consensus 1126 dsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~------ 1191 (1630)
T 1xi4_A 1126 DSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN------ 1191 (1630)
T ss_pred HHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHh------
Confidence 888553 356667778888888888888888887777654 444445568888888888775443321
Q ss_pred chhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHH
Q 047408 434 IVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLAR 513 (830)
Q Consensus 434 ~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~ 513 (830)
.|+...+..+...|...|++++|..++..+ ..|..+...|.++|++++|.
T Consensus 1192 ---------------------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AI 1241 (1630)
T 1xi4_A 1192 ---------------------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAV 1241 (1630)
T ss_pred ---------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHH
Confidence 244445556777888888888888888774 37788888888999999999
Q ss_pred HHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC
Q 047408 514 SLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEP 593 (830)
Q Consensus 514 ~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 593 (830)
+.+++. .+..+|..+-.+|...|+++.|...... +..+...+..++..|.+.|.+++|+.+++... ++.|
T Consensus 1242 EaarKA--~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL---~Ler 1311 (1630)
T 1xi4_A 1242 DGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAAL---GLER 1311 (1630)
T ss_pred HHHHHh--CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh---ccCh
Confidence 888876 4667888888888888888888776553 22344445577777888888888888887654 5554
Q ss_pred C-cchHHHHHHHHHh--cCCHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhc--------
Q 047408 594 K-LEHYACMVDLLSR--TGNLSEAYRFIEMM-PVAP------DATIWGSLLCGCRIHHEVKLAEKVAEHVFE-------- 655 (830)
Q Consensus 594 ~-~~~y~~lv~~l~r--~g~~~eA~~~~~~m-~~~p------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-------- 655 (830)
. ...|+-|..+|.+ -+++.|+.++|.+- .++| +...|.-+...|.+.|+++.|....-.-.+
T Consensus 1312 aH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~F 1391 (1630)
T 1xi4_A 1312 AHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQF 1391 (1630)
T ss_pred hHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHH
Confidence 3 4455556666654 45677777766543 4433 356788888888888888887732211111
Q ss_pred ----cCCCCcchHHHHHHHHhhhc
Q 047408 656 ----LEPDNTGYYVLLANVYAEAE 675 (830)
Q Consensus 656 ----l~p~~~~~~~~l~~~y~~~g 675 (830)
..+.|+..|...++-|....
T Consensus 1392 k~~i~kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1392 KDIITKVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred HHHhcccccHHHHHHHHHHHHhhC
Confidence 24666777777777776665
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.69 E-value=2.8e-16 Score=170.21 Aligned_cols=147 Identities=10% Similarity=-0.004 Sum_probs=127.8
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC---hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcC
Q 047408 534 YGMHGFGCDAIATFNDMRQAGIEPD---EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTG 609 (830)
Q Consensus 534 ~~~~g~~~~A~~l~~~m~~~g~~Pd---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g 609 (830)
+...|++++|++.|+++.+. .|+ ..++..+...+...|++++|..+|+.+... .| +...|..++.+|.+.|
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g 265 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGN 265 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTT
T ss_pred HhhcccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcC
Confidence 33889999999999999884 455 567888889999999999999999988743 45 4678899999999999
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC-----------cchHHHHHHHHhhhcC
Q 047408 610 NLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDN-----------TGYYVLLANVYAEAEK 676 (830)
Q Consensus 610 ~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~-----------~~~~~~l~~~y~~~g~ 676 (830)
++++|.+.++++ ...| +..+|..+...+...|++++|...+++++++.|++ +..|..++.+|...|+
T Consensus 266 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 345 (368)
T 1fch_A 266 QSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 345 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCC
Confidence 999999999986 3445 57889999999999999999999999999999887 7889999999999999
Q ss_pred HHHHHHHHH
Q 047408 677 WEEVKKLRE 685 (830)
Q Consensus 677 ~~~A~~~~~ 685 (830)
+++|..+.+
T Consensus 346 ~~~A~~~~~ 354 (368)
T 1fch_A 346 SDAYGAADA 354 (368)
T ss_dssp GGGHHHHHT
T ss_pred hHhHHHhHH
Confidence 999998865
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-14 Score=165.98 Aligned_cols=409 Identities=11% Similarity=0.073 Sum_probs=254.8
Q ss_pred CCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC-ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHH
Q 047408 229 DRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNV-DLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNT 307 (830)
Q Consensus 229 ~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~ 307 (830)
+.|...|..++. +.+.|++++|..+|+++.+. .| +...|...+..+.+.|+.+.++.++..+++.. |++.+|..
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~ 84 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKC 84 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHH
Confidence 346778888888 57889999999999998864 34 33445555555666666666666666666543 34445554
Q ss_pred HHH-HhhcCCChHHHHH----HHhhcC-----C-CCeehHHHHHHHHHh---------cCChhHHHHHHHHHHHcCCCCC
Q 047408 308 LLD-MYSKCGDLDGAIR----VFEKMG-----E-RSVVSWTSMIAGYAR---------EGVFDGAIRLFRGMVREGIEPD 367 (830)
Q Consensus 308 Li~-~y~k~g~~~~A~~----~f~~m~-----~-~d~~~~~~li~~~~~---------~g~~~~A~~l~~~m~~~g~~pd 367 (830)
++. .....|+.+.|++ +|+... . .+...|...+....+ .|++++|..+|++.+.. |+
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~ 161 (530)
T 2ooe_A 85 YLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PM 161 (530)
T ss_dssp HHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CC
T ss_pred HHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hh
Confidence 443 2223455555443 444321 1 233455555554433 45566666666665541 22
Q ss_pred cchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcC------CCC-------C-
Q 047408 368 VYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQM------PVK-------D- 433 (830)
Q Consensus 368 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m------~~~-------~- 433 (830)
.. ...+...+.. ++.. .| ..+...++. .+.++++.|..++..+ .++ +
T Consensus 162 ~~-~~~~~~~~~~---~e~~---------~~----~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~ 222 (530)
T 2ooe_A 162 IN-IEQLWRDYNK---YEEG---------IN----IHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQN 222 (530)
T ss_dssp TT-HHHHHHHHHH---HHHH---------HC----HHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC-
T ss_pred hh-HHHHHHHHHH---HHHh---------hc----hhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCC
Confidence 11 0011111100 0000 00 000011110 1233445555444431 110 0
Q ss_pred -------chhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhh----HHHHHHHHHHHHHhCCCCchhHHhHHHHH
Q 047408 434 -------IVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAA----LERGREIHGYILRHGISADRNVANAIVDM 502 (830)
Q Consensus 434 -------~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~----~~~a~~i~~~~~~~g~~~~~~~~~~Li~~ 502 (830)
...|...+ ..... .|. ..++ .+.+..++..+++.. +.+..+|..++..
T Consensus 223 ~~~~~~~~~~w~~~~-------~~e~~-~~~------------~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~ 281 (530)
T 2ooe_A 223 TPQEAQQVDMWKKYI-------QWEKS-NPL------------RTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQY 281 (530)
T ss_dssp -CCHHHHHHHHHHHH-------HHHHH-CSS------------CCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHH-------HHHHc-CCc------------cCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 01111111 00000 000 0111 235667788887763 5678888888888
Q ss_pred HHh-------cCCHH-------HHHHHhhhCCC---C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--hHH
Q 047408 503 YVK-------CGVLV-------LARSLFDMIPA---K-DLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDE--VSF 562 (830)
Q Consensus 503 y~k-------~g~~~-------~A~~~f~~m~~---~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~--~t~ 562 (830)
+.+ .|+++ +|..+|++... | +...|..++..+.+.|++++|.++|+++++ +.|+. ..|
T Consensus 282 ~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~ 359 (530)
T 2ooe_A 282 LEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVY 359 (530)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHH
T ss_pred HHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHH
Confidence 886 79987 89999997652 3 578999999999999999999999999998 56764 368
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHH-HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 047408 563 ISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDL-LSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCR 638 (830)
Q Consensus 563 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~-l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~ 638 (830)
......+.+.|.+++|+++|+...+ ..|. ...|...+.+ +...|+.++|.++|++. ...| +..+|..++....
T Consensus 360 ~~~~~~~~~~~~~~~A~~~~~~Al~---~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~ 436 (530)
T 2ooe_A 360 IQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS 436 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHh---ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 8888888899999999999999874 3443 2333333322 34689999999999976 3345 5789999999999
Q ss_pred hcCCHHHHHHHHHHHhccCCCCcc----hHHHHHHHHhhhcCHHHHHHHHHHHHhC
Q 047408 639 IHHEVKLAEKVAEHVFELEPDNTG----YYVLLANVYAEAEKWEEVKKLREKISRR 690 (830)
Q Consensus 639 ~~g~~~~a~~~~~~~~~l~p~~~~----~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 690 (830)
..|+.+.|+.+++++++..|.++. .+...+......|+.+++.++.+.+.+.
T Consensus 437 ~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 437 HLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp TTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred hCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999998877665 6777788888899999999998887653
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.68 E-value=8.8e-16 Score=164.13 Aligned_cols=372 Identities=13% Similarity=0.110 Sum_probs=172.8
Q ss_pred CHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHH
Q 047408 216 RVKDAHKLFDELSDRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALK 295 (830)
Q Consensus 216 ~~~~A~~lf~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~ 295 (830)
++++|.+.+++++.|+ +|..|..++.+.|++++|++.|.+ .+|..+|..++.+|...|+++++...+..+.+
T Consensus 18 ~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark 89 (449)
T 1b89_A 18 NLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARK 89 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 5888999999986664 899999999999999999999965 26778999999999999999999998888777
Q ss_pred hCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHH
Q 047408 296 ACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSIL 375 (830)
Q Consensus 296 ~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 375 (830)
. .+++.+.+.|+.+|.|+|+++++.++|+. |+..+|+.+...|...|.+++|..+|..+ ..|..+.
T Consensus 90 ~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA 155 (449)
T 1b89_A 90 K--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLA 155 (449)
T ss_dssp ---------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHHHHH
T ss_pred h--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHH
Confidence 4 45577889999999999999998888864 77789999999999999999999999976 4788899
Q ss_pred HHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCC
Q 047408 376 HACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFE 455 (830)
Q Consensus 376 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~ 455 (830)
.++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+.. .
T Consensus 156 ~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~-----------------------~ 206 (449)
T 1b89_A 156 STLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-----------------------H 206 (449)
T ss_dssp HHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTT-----------------------C
T ss_pred HHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHh-----------------------C
Confidence 9999999999999998887 3788999999999999999999777665431 2
Q ss_pred CCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhc--CCHHHHHHHhhhCC---C-----CChh
Q 047408 456 PDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKC--GVLVLARSLFDMIP---A-----KDLI 525 (830)
Q Consensus 456 pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~--g~~~~A~~~f~~m~---~-----~d~~ 525 (830)
|+. ...++..+.+.|.++++..+++..+... +.....++-|.-.|+|- +++.+..+.|..-. + .+..
T Consensus 207 ad~--l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~ 283 (449)
T 1b89_A 207 ADE--LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAH 283 (449)
T ss_dssp HHH--HHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTT
T ss_pred Hhh--HHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 333 2246677888899999999888877554 45677888888888775 57888888887432 1 2567
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---hhHHHHHHHHHHccCCHHHHHHHHHHhHhh------cCCCCCcc
Q 047408 526 SWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPD---EVSFISVLYACSHSGLVDEGWRFFNMMRYE------CNIEPKLE 596 (830)
Q Consensus 526 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~------~~~~p~~~ 596 (830)
.|.-+...|.+.++++.|... |.+ ..|+ ...|.-++.--.....+-+|..++-.-... ..+.|...
T Consensus 284 ~w~e~~~ly~~~~e~d~A~~t---m~~--h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p~~l~~ll~~l~~~ld 358 (449)
T 1b89_A 284 LWAELVFLYDKYEEYDNAIIT---MMN--HPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLD 358 (449)
T ss_dssp CHHHHHHHHHHTTCHHHHHHH---HHH--STTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGGGHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHhhchHHHHHHH---HHh--CChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 899999999999999999874 444 2333 334444443333333333444443211000 01122222
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047408 597 HYACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAE 647 (830)
Q Consensus 597 ~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~ 647 (830)
| +-.|..+.+.|++.-+..+++...-.-+..+=.+|-..+....|++.-+
T Consensus 359 ~-~r~v~~~~~~~~l~l~~~yl~~v~~~n~~~vnealn~l~ieeed~~~lr 408 (449)
T 1b89_A 359 H-TRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALR 408 (449)
T ss_dssp H-HHHHHHHHHTTCTTTTHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred c-HHHHHHHHHcCCcHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHHH
Confidence 2 3344455555555555454444432333344444545555555555433
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=6.2e-17 Score=185.65 Aligned_cols=131 Identities=16% Similarity=0.164 Sum_probs=115.3
Q ss_pred CCchhHHhHHHHHHHhcCCHHHHHHHhhhCC-------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHH
Q 047408 490 SADRNVANAIVDMYVKCGVLVLARSLFDMIP-------AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSF 562 (830)
Q Consensus 490 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~-------~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~ 562 (830)
..-..+||+||++|+|+|++++|.++|++|. .||++|||+||.||++.|+.++|+++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3446789999999999999999999997653 689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCC-HHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 047408 563 ISVLYACSHSGL-VDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM 621 (830)
Q Consensus 563 ~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m 621 (830)
+++|.++++.|. .++|.++|++|..+ |+.||..+|+|+++...|.+-++...++...+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 999999999997 57899999999866 99999999999998888876666665554433
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.9e-13 Score=152.92 Aligned_cols=372 Identities=10% Similarity=-0.028 Sum_probs=229.8
Q ss_pred CcchHHHHHHHHHh----CCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhc----CCChHHHHHHHHHHHHhCCCCCc
Q 047408 231 DVVSWNCMISGYIA----NGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCAN----CGALMFGRAVHAFALKACFSKEI 302 (830)
Q Consensus 231 ~~~~~n~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~~~~~~~~~l~~~~~~~g~~~~~ 302 (830)
|..++..+-..|.. .+++++|++.|++..+.| +...+..+-..+.. .++.+.|...+....+.| ++
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 45555556666666 677777777777776653 23333333333333 444555555555444432 23
Q ss_pred hHHHHHHHHhhc----CCChHHHHHHHhhcCCC-CeehHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCcchHHH
Q 047408 303 SFNNTLLDMYSK----CGDLDGAIRVFEKMGER-SVVSWTSMIAGYAR----EGVFDGAIRLFRGMVREGIEPDVYAITS 373 (830)
Q Consensus 303 ~~~~~Li~~y~k----~g~~~~A~~~f~~m~~~-d~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 373 (830)
.....|-.+|.. .++.++|.+.|++..+. +...+..+...|.. .++.++|++.|++..+.| +...+..
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~ 188 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQ 188 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 333444444444 45555555555544332 33344444444444 445555555555554432 2233333
Q ss_pred HHHHhhc----cCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHH
Q 047408 374 ILHACAC----DGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVA 449 (830)
Q Consensus 374 ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~ 449 (830)
+-..+.. .++.++|.+.+....+.| +...+..|..+|...
T Consensus 189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g--------------------------------- 232 (490)
T 2xm6_A 189 LGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFG--------------------------------- 232 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT---------------------------------
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC---------------------------------
Confidence 3333333 444444444444444433 233344444444430
Q ss_pred HHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHh----cCCHHHHHHHhhhCCC-CCh
Q 047408 450 MLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVK----CGVLVLARSLFDMIPA-KDL 524 (830)
Q Consensus 450 m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k----~g~~~~A~~~f~~m~~-~d~ 524 (830)
....++.++|.+.+....+.| +......|..+|.+ .++.++|...|++..+ .+.
T Consensus 233 ------------------~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~ 291 (490)
T 2xm6_A 233 ------------------IGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNS 291 (490)
T ss_dssp ------------------SSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCH
T ss_pred ------------------CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 001344555555555554433 34455667777777 7889999999987653 466
Q ss_pred hhHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccC---CHHHHHHHHHHhHhhcCCCCCcc
Q 047408 525 ISWTIMIAGYGMH-----GFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSG---LVDEGWRFFNMMRYECNIEPKLE 596 (830)
Q Consensus 525 ~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p~~~ 596 (830)
..+..+...|... ++.++|++.|++..+.| +...+..+...+...| +.++|.++|+...+. .+..
T Consensus 292 ~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~ 364 (490)
T 2xm6_A 292 DGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKA 364 (490)
T ss_dssp HHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHH
T ss_pred HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHH
Confidence 7778888888877 89999999999998864 3455666666666656 788999999988743 3567
Q ss_pred hHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCC---CcchHH
Q 047408 597 HYACMVDLLSR----TGNLSEAYRFIEMMPVAPDATIWGSLLCGCRI----HHEVKLAEKVAEHVFELEPD---NTGYYV 665 (830)
Q Consensus 597 ~y~~lv~~l~r----~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~l~p~---~~~~~~ 665 (830)
.+..|..+|.. .+++++|.+.+++.--..++..+..|...+.. .+|.++|...++++.+.+|+ ++....
T Consensus 365 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~ 444 (490)
T 2xm6_A 365 AQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNI 444 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHH
Confidence 88888999988 89999999999987333467788888888887 89999999999999999854 777778
Q ss_pred HHHHHHhhhc
Q 047408 666 LLANVYAEAE 675 (830)
Q Consensus 666 ~l~~~y~~~g 675 (830)
.|+.++....
T Consensus 445 ~l~~~~~~~~ 454 (490)
T 2xm6_A 445 TEKKLTAKQL 454 (490)
T ss_dssp HHTTSCHHHH
T ss_pred HHHhcCHhHH
Confidence 8888777543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.64 E-value=4e-15 Score=161.21 Aligned_cols=230 Identities=10% Similarity=-0.028 Sum_probs=193.0
Q ss_pred CccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHH
Q 047408 457 DGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAG 533 (830)
Q Consensus 457 d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~ 533 (830)
+...+......+...|++++|...+..+++.. +.+..++..+...|.+.|++++|...|+++. ..+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34456667777888889999999999888875 5678899999999999999999999999865 4567899999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChhH-----------HHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHH
Q 047408 534 YGMHGFGCDAIATFNDMRQAGIEPDEVS-----------FISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMV 602 (830)
Q Consensus 534 ~~~~g~~~~A~~l~~~m~~~g~~Pd~~t-----------~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 602 (830)
|...|++++|++.|+++.+ +.|+... +..+...+...|++++|.++|+.+.....-.++...+..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIK--QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHH--hCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 9999999999999999998 3455432 22346788999999999999999986533333578899999
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHH
Q 047408 603 DLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEV 680 (830)
Q Consensus 603 ~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A 680 (830)
.+|.+.|++++|++.++++ ...| +..+|..+...+...|++++|+..+++++++.|+++..+..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999987 3444 5789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 047408 681 KKLREKISR 689 (830)
Q Consensus 681 ~~~~~~m~~ 689 (830)
.+.++++.+
T Consensus 301 ~~~~~~al~ 309 (365)
T 4eqf_A 301 VSNFLTALS 309 (365)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998875
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-14 Score=150.97 Aligned_cols=245 Identities=8% Similarity=-0.024 Sum_probs=192.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHH
Q 047408 405 VSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYI 484 (830)
Q Consensus 405 ~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~ 484 (830)
..-.+..+|...|++++|...++.. + .|+..++..+...+...++.+.+.+.+..+
T Consensus 36 ~~~~l~r~yi~~g~~~~al~~~~~~---~---------------------~~~~~a~~~la~~~~~~~~~~~A~~~l~~l 91 (291)
T 3mkr_A 36 RDVFLYRAYLAQRKYGVVLDEIKPS---S---------------------APELQAVRMFAEYLASHSRRDAIVAELDRE 91 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHSCTT---S---------------------CHHHHHHHHHHHHHHCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHhccc---C---------------------ChhHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 3344667788888888887766542 1 244555666666677777788888888888
Q ss_pred HHhCC-CCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHH-
Q 047408 485 LRHGI-SADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSF- 562 (830)
Q Consensus 485 ~~~g~-~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~- 562 (830)
++.+. +.+..++..+...|.+.|++++|.+.|++ ..+...|..++..|.+.|+.++|++.|+++.+. .|+....
T Consensus 92 l~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~ 167 (291)
T 3mkr_A 92 MSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--DEDATLTQ 167 (291)
T ss_dssp HHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcCcHHHH
Confidence 77764 44677788888999999999999999999 567889999999999999999999999999985 5775421
Q ss_pred --HHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 047408 563 --ISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCR 638 (830)
Q Consensus 563 --~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~ 638 (830)
.+.+..+...|++++|..+|+.+... .+.+...++.+..+|.+.|++++|++.+++. ...| ++.+|..++..+.
T Consensus 168 l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~ 245 (291)
T 3mkr_A 168 LATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQ 245 (291)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 12233344569999999999999865 2346788999999999999999999999986 5556 5778999999999
Q ss_pred hcCCHHH-HHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHH
Q 047408 639 IHHEVKL-AEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKL 683 (830)
Q Consensus 639 ~~g~~~~-a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~ 683 (830)
..|+.++ +...++++++++|+++.+ .+++.+.+.++++..-
T Consensus 246 ~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 246 HLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHH
Confidence 9998865 678999999999998754 4567777788777653
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-16 Score=183.04 Aligned_cols=131 Identities=10% Similarity=0.134 Sum_probs=117.8
Q ss_pred CCchHHHHHHHHhhcCCChHHHHHHHhhcC-------CCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHH
Q 047408 300 KEISFNNTLLDMYSKCGDLDGAIRVFEKMG-------ERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAIT 372 (830)
Q Consensus 300 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~-------~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 372 (830)
.-..+||+||++|+++|++++|.++|++|. .||+++||+||.||++.|+.++|.++|++|.+.|+.||.+||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 344578999999999999999999997763 5899999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCcc-hhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCC
Q 047408 373 SILHACACDGLL-EIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMP 430 (830)
Q Consensus 373 ~ll~a~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~ 430 (830)
++|.++++.|.. +.|.+++++|.+.|+.||..+|+++++.+.+.+-++...+++.++.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~ 263 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFS 263 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccC
Confidence 999999999985 7899999999999999999999999998888766666666655443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.7e-14 Score=162.19 Aligned_cols=363 Identities=12% Similarity=0.010 Sum_probs=203.3
Q ss_pred chHHHHHHHHhhcCCChHHHHHHHhhcC-----------C-CCeehHHHHHHHHHhcCChhHHHHHHHHHHHcC------
Q 047408 302 ISFNNTLLDMYSKCGDLDGAIRVFEKMG-----------E-RSVVSWTSMIAGYAREGVFDGAIRLFRGMVREG------ 363 (830)
Q Consensus 302 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~-----------~-~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------ 363 (830)
...||.|...|...|+.++|++.|++.. . ...++|+.+...|...|++++|...|++.....
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 3455666666666666666666665431 1 134566666667777777777776666654310
Q ss_pred CCCC-cchHHHHHHHhhc--cCcchhhhhHHHHHHhhcCCCchhhHHHHHHHH---HhcCChHHHHHHHhcCCCCCchhH
Q 047408 364 IEPD-VYAITSILHACAC--DGLLEIGKDVHDYIKENDMQSSLYVSNALMDMY---AKCGSMADAESVFNQMPVKDIVSW 437 (830)
Q Consensus 364 ~~pd-~~t~~~ll~a~~~--~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y---~k~g~~~~A~~~f~~m~~~~~~~~ 437 (830)
..++ ..++.....++.. .+++++|.+.|..+++.. +.+...+..+...+ ...++.++|.+.|++..+.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~---- 205 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN---- 205 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC----
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC----
Confidence 0111 1223322222222 345666777776666654 22333444444332 33445555555554332111
Q ss_pred HHHHHHHHHHHHHHhCCCCCccccccchhhh----cchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHH
Q 047408 438 NTMIGALDLFVAMLQNFEPDGVTMACILPAC----ASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLAR 513 (830)
Q Consensus 438 n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~----~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~ 513 (830)
+.+..++..+...+ ...++.++|.+.+..+.+.. +.+..++..+...|.+.|++++|.
T Consensus 206 -----------------p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~ 267 (472)
T 4g1t_A 206 -----------------PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAI 267 (472)
T ss_dssp -----------------SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred -----------------CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHH
Confidence 11222222222222 23355667777777776654 455667777888888888888888
Q ss_pred HHhhhCC---CCChhhHHHHHHHHHh-------------------cCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHH
Q 047408 514 SLFDMIP---AKDLISWTIMIAGYGM-------------------HGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACS 570 (830)
Q Consensus 514 ~~f~~m~---~~d~~~~~~li~~~~~-------------------~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~ 570 (830)
..|++.. ..+..+|..+...|.. .+..++|+..|++..+ ..|+.. ++..+...+.
T Consensus 268 ~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~lg~~~~ 345 (472)
T 4g1t_A 268 ELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE--ANDNLFRVCSILASLHA 345 (472)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH--HCTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh--cCCchhhhhhhHHHHHH
Confidence 8887654 3345566666555432 2346788888888877 355544 6788888999
Q ss_pred ccCCHHHHHHHHHHhHhhcCCCCCcc----hHHHHHH-HHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHH
Q 047408 571 HSGLVDEGWRFFNMMRYECNIEPKLE----HYACMVD-LLSRTGNLSEAYRFIEMM-PVAPDATIWGSLLCGCRIHHEVK 644 (830)
Q Consensus 571 ~~g~~~~a~~~~~~m~~~~~~~p~~~----~y~~lv~-~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~ 644 (830)
..|++++|.++|+.... +.|+.. .+..+.. .+...|+.++|++.+++. .+.|+...+... .+
T Consensus 346 ~~~~~~~A~~~~~kaL~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~---------~~ 413 (472)
T 4g1t_A 346 LADQYEEAEYYFQKEFS---KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM---------KD 413 (472)
T ss_dssp HTTCHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH---------HH
T ss_pred HhccHHHHHHHHHHHHh---cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH---------HH
Confidence 99999999999998763 334322 2233333 245789999999998876 667775444333 34
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCcCCCceeEE
Q 047408 645 LAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWI 701 (830)
Q Consensus 645 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~~~swi 701 (830)
.++.++++.++.+|+++.+|..|+.+|...|++++|.+.+++..+.|-.-....+|+
T Consensus 414 ~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 414 KLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 456778888999999999999999999999999999999998887665544444553
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.63 E-value=2.8e-14 Score=154.36 Aligned_cols=249 Identities=15% Similarity=0.073 Sum_probs=159.4
Q ss_pred hhcCCChHHHHH-HHhhcCC-----C--CeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCc
Q 047408 312 YSKCGDLDGAIR-VFEKMGE-----R--SVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGL 383 (830)
Q Consensus 312 y~k~g~~~~A~~-~f~~m~~-----~--d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~ 383 (830)
|.-.|++++|.. .|++... | +...|..+...|.+.|++++|+..|+++.+.. +.+..++..+...+...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344578888888 8875533 1 45678899999999999999999999998763 3355677888888999999
Q ss_pred chhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCcccccc
Q 047408 384 LEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMAC 463 (830)
Q Consensus 384 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ 463 (830)
+++|...+..+++.. +.+..++..+...|.+.|++++|...|+++...+ |+......
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----------------------~~~~~~~~ 170 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT----------------------PAYAHLVT 170 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS----------------------TTTGGGCC
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------cCcHHHHH
Confidence 999999999999886 5577889999999999999999999998765432 22211111
Q ss_pred ----------------chhhhcchhhHHHHHHHHHHHHHhCCCC-chhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCC
Q 047408 464 ----------------ILPACASLAALERGREIHGYILRHGISA-DRNVANAIVDMYVKCGVLVLARSLFDMIP---AKD 523 (830)
Q Consensus 464 ----------------ll~a~~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d 523 (830)
.+..+...|++++|...+..+++..... +..++..+...|.+.|++++|...|+++. ..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 250 (368)
T 1fch_A 171 PAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND 250 (368)
T ss_dssp ---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 2333346677777777777666654221 35556666666666666666666665543 234
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHccCCHHHHHHHHHHhH
Q 047408 524 LISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPD-EVSFISVLYACSHSGLVDEGWRFFNMMR 586 (830)
Q Consensus 524 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 586 (830)
..+|+.+...|...|++++|++.|+++.+. .|+ ...+..+..++.+.|++++|..+|+.+.
T Consensus 251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 312 (368)
T 1fch_A 251 YLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEAL 312 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455666666666666666666666665552 333 2345555555555555555555555543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.63 E-value=8.3e-16 Score=166.60 Aligned_cols=220 Identities=10% Similarity=-0.077 Sum_probs=166.8
Q ss_pred ccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCC---C----------hhh
Q 047408 460 TMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAK---D----------LIS 526 (830)
Q Consensus 460 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~---d----------~~~ 526 (830)
++..+...+...|++++|...+..+++.. +.+..++..+...|.+.|++++|...|+++... + ...
T Consensus 101 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 179 (365)
T 4eqf_A 101 AWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGL 179 (365)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC----------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHH
Confidence 34444444445555555555555555543 345777888888899999999999888876421 1 223
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---ChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHH
Q 047408 527 WTIMIAGYGMHGFGCDAIATFNDMRQAGIEP---DEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMV 602 (830)
Q Consensus 527 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P---d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv 602 (830)
++.+...|...|++++|++.|+++.+. .| +..++..+...+...|++++|.++|+.+... .| +...|..++
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~ 254 (365)
T 4eqf_A 180 TRRMSKSPVDSSVLEGVKELYLEAAHQ--NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV---RPEDYSLWNRLG 254 (365)
T ss_dssp ---------CCHHHHHHHHHHHHHHHH--SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHh--CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 345588899999999999999999985 45 4668888999999999999999999998743 34 477899999
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC------------CcchHHHHH
Q 047408 603 DLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPD------------NTGYYVLLA 668 (830)
Q Consensus 603 ~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~------------~~~~~~~l~ 668 (830)
.+|.+.|++++|++.++++ ...| +..+|..+...+...|++++|...+++++++.|+ +...+..|+
T Consensus 255 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~ 334 (365)
T 4eqf_A 255 ATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALR 334 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHH
Confidence 9999999999999999987 4455 4789999999999999999999999999999887 356789999
Q ss_pred HHHhhhcCHHHHHHHHH
Q 047408 669 NVYAEAEKWEEVKKLRE 685 (830)
Q Consensus 669 ~~y~~~g~~~~A~~~~~ 685 (830)
.+|...|+.+.+.++.+
T Consensus 335 ~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 335 IALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHTCHHHHHHHHT
T ss_pred HHHHHcCcHHHHHHHHH
Confidence 99999999999988754
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.60 E-value=9.4e-13 Score=150.34 Aligned_cols=374 Identities=10% Similarity=0.071 Sum_probs=239.8
Q ss_pred CCchHHHHHHHHhhcCCChHHHHHHHhhcCC--C-CeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHH
Q 047408 300 KEISFNNTLLDMYSKCGDLDGAIRVFEKMGE--R-SVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILH 376 (830)
Q Consensus 300 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 376 (830)
.+...|..++. +.+.|++++|+.+|+++.+ | +...|...+..+.+.|++++|..+|++.+.. .|+...+...+.
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~ 87 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLS 87 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHH
Confidence 34555666666 3556777777777776654 2 3445667777777777777777777776654 355444444443
Q ss_pred H-hhccCcchhhhh----HHHHHHhh-cCCC-chhhHHHHHHHHHh---------cCChHHHHHHHhcCCCCCc----hh
Q 047408 377 A-CACDGLLEIGKD----VHDYIKEN-DMQS-SLYVSNALMDMYAK---------CGSMADAESVFNQMPVKDI----VS 436 (830)
Q Consensus 377 a-~~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~Li~~y~k---------~g~~~~A~~~f~~m~~~~~----~~ 436 (830)
. ....|+.+.|++ +++..++. |..+ +..+|..++....+ .|+++.|+.+|++...... ..
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~ 167 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL 167 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence 2 223455555544 45444432 4332 34566666665554 6778888888877554211 11
Q ss_pred HHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHH------HhC---CCCc--------hhHHhHH
Q 047408 437 WNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYIL------RHG---ISAD--------RNVANAI 499 (830)
Q Consensus 437 ~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~------~~g---~~~~--------~~~~~~L 499 (830)
|.... .|.+-. + ..+...++. ...+.+..|+.++.... +.. ++|+ ...|...
T Consensus 168 ~~~~~----~~e~~~--~---~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 168 WRDYN----KYEEGI--N---IHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp HHHHH----HHHHHH--C---HHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HHHHH----HHHHhh--c---hhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 11111 111000 0 000000110 13455666766665532 111 2333 2455555
Q ss_pred HHHHHhc----CCH----HHHHHHhhhCC---CCChhhHHHHHHHHHh-------cCChH-------HHHHHHHHHHHcC
Q 047408 500 VDMYVKC----GVL----VLARSLFDMIP---AKDLISWTIMIAGYGM-------HGFGC-------DAIATFNDMRQAG 554 (830)
Q Consensus 500 i~~y~k~----g~~----~~A~~~f~~m~---~~d~~~~~~li~~~~~-------~g~~~-------~A~~l~~~m~~~g 554 (830)
+...... ++. +.|..+|++.. ..+...|..++..+.+ .|+.+ +|.++|++..+.
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~- 315 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST- 315 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-
Confidence 5443322 222 36667777654 3477899999888876 79987 999999999863
Q ss_pred CCCCh-hHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCc--chHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHH
Q 047408 555 IEPDE-VSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKL--EHYACMVDLLSRTGNLSEAYRFIEMM-PVAPD-ATI 629 (830)
Q Consensus 555 ~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~ 629 (830)
+.|+. ..+..++..+...|++++|..+|+.+.. +.|+. ..|..++..+.+.|++++|.++|++. ...|+ ...
T Consensus 316 ~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~ 392 (530)
T 2ooe_A 316 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHV 392 (530)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC---ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHH
Confidence 45664 4678888888999999999999999884 56653 47889999999999999999999987 33343 333
Q ss_pred HHHHHHH-HHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCC
Q 047408 630 WGSLLCG-CRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRG 691 (830)
Q Consensus 630 ~~~ll~~-~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g 691 (830)
|...... +...|+.+.|..+++++++..|+++..+..++.++.+.|+.++|..+++.....+
T Consensus 393 ~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 393 YVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 3332222 3468999999999999999999999999999999999999999999999988754
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.59 E-value=9.3e-13 Score=148.77 Aligned_cols=337 Identities=10% Similarity=-0.000 Sum_probs=237.1
Q ss_pred CCChHHHHHHHhhcCC-CCeehHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhc----cCcch
Q 047408 315 CGDLDGAIRVFEKMGE-RSVVSWTSMIAGYAR----EGVFDGAIRLFRGMVREGIEPDVYAITSILHACAC----DGLLE 385 (830)
Q Consensus 315 ~g~~~~A~~~f~~m~~-~d~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~~~~~ 385 (830)
.++.++|...|++..+ .+...+..+...|.. .+++++|+..|++..+.| +...+..+-..+.. .++.+
T Consensus 56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~ 132 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKA 132 (490)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 5556666666655433 244455555555555 566666666666665543 33333344444444 45666
Q ss_pred hhhhHHHHHHhhcCCCchhhHHHHHHHHHh----cCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCcccc
Q 047408 386 IGKDVHDYIKENDMQSSLYVSNALMDMYAK----CGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTM 461 (830)
Q Consensus 386 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k----~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~ 461 (830)
+|...+....+.| +...+..|..+|.. .++.++|.+.|++..+.+ +...+
T Consensus 133 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~-----------------------~~~a~ 186 (490)
T 2xm6_A 133 ESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG-----------------------NVWSC 186 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----------------------CHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----------------------CHHHH
Confidence 6666666666554 34455566666665 566666666666543221 11122
Q ss_pred ccchhhhcc----hhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHh----cCCHHHHHHHhhhCC-CCChhhHHHHHH
Q 047408 462 ACILPACAS----LAALERGREIHGYILRHGISADRNVANAIVDMYVK----CGVLVLARSLFDMIP-AKDLISWTIMIA 532 (830)
Q Consensus 462 ~~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k----~g~~~~A~~~f~~m~-~~d~~~~~~li~ 532 (830)
..+...+.. .++.++|.+.+....+.| +......|..+|.. .++.++|...|++.. ..+...+..+..
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~ 263 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGY 263 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 222222222 566777777777777754 56677888888887 889999999999865 446778888888
Q ss_pred HHHh----cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHcc-----CCHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 047408 533 GYGM----HGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHS-----GLVDEGWRFFNMMRYECNIEPKLEHYACMVD 603 (830)
Q Consensus 533 ~~~~----~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~ 603 (830)
.|.. .++.++|++.|++..+.| +...+..+...+... ++.++|..+|+...+. + +...+..|..
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 336 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGA 336 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHH
Confidence 8887 899999999999998764 444666666777776 8999999999988743 2 4567778888
Q ss_pred HHHhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhh---
Q 047408 604 LLSRTG---NLSEAYRFIEMMPVAPDATIWGSLLCGCRI----HHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAE--- 673 (830)
Q Consensus 604 ~l~r~g---~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~--- 673 (830)
+|.+.| +.++|.+.+++.--..++..|..|...+.. .++.++|...++++.+.. ++..+..|+.+|..
T Consensus 337 ~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g 414 (490)
T 2xm6_A 337 IYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLG 414 (490)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSS
T ss_pred HHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCC
Confidence 888767 889999999987434678889999999888 899999999999998864 57889999999999
Q ss_pred -hcCHHHHHHHHHHHHhCCC
Q 047408 674 -AEKWEEVKKLREKISRRGL 692 (830)
Q Consensus 674 -~g~~~~A~~~~~~m~~~g~ 692 (830)
.++.++|.+.+++..+.|.
T Consensus 415 ~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 415 VERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp SCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHCCC
Confidence 8999999999999887553
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-14 Score=153.43 Aligned_cols=258 Identities=9% Similarity=-0.089 Sum_probs=205.8
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHH
Q 047408 402 SLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIH 481 (830)
Q Consensus 402 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~ 481 (830)
+...+..+...|.+.|++++|..+|+++...+ +.+..++..+..++...|++++|.+.+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~ 78 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA---------------------PEREEAWRSLGLTQAENEKDGLAIIAL 78 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 33455667778888888888888887764432 123445556667777888888888888
Q ss_pred HHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHH--------------HH-HHHhcCChHHH
Q 047408 482 GYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIM--------------IA-GYGMHGFGCDA 543 (830)
Q Consensus 482 ~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~l--------------i~-~~~~~g~~~~A 543 (830)
..+++.. +.+..++..+...|.+.|++++|.+.|+++. ..+...+..+ .. .+...|++++|
T Consensus 79 ~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 157 (327)
T 3cv0_A 79 NHARMLD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYREC 157 (327)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHH
T ss_pred HHHHhcC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHH
Confidence 8888764 4567888899999999999999999998764 2233444443 22 37788999999
Q ss_pred HHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-
Q 047408 544 IATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM- 621 (830)
Q Consensus 544 ~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m- 621 (830)
++.|+++.+.. +.+...+..+...+...|++++|.++++.+... .| +...+..+...|.+.|++++|.+.++++
T Consensus 158 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 233 (327)
T 3cv0_A 158 RTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQEALDAYNRAL 233 (327)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999852 234567888889999999999999999998743 34 4678899999999999999999999986
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC------------CcchHHHHHHHHhhhcCHHHHHHHHH
Q 047408 622 PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPD------------NTGYYVLLANVYAEAEKWEEVKKLRE 685 (830)
Q Consensus 622 ~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~------------~~~~~~~l~~~y~~~g~~~~A~~~~~ 685 (830)
...| +..+|..+...+...|++++|...+++++++.|+ ++..+..++.+|...|++++|.++++
T Consensus 234 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 234 DINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3444 5788999999999999999999999999999999 78899999999999999999998865
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.3e-14 Score=146.92 Aligned_cols=244 Identities=9% Similarity=0.016 Sum_probs=197.0
Q ss_pred HHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCc--cccccchhhhcchhhHHHHHHHHHHHHHhC
Q 047408 411 DMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDG--VTMACILPACASLAALERGREIHGYILRHG 488 (830)
Q Consensus 411 ~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~--~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 488 (830)
.-....|++..|+..++.....+ |+. .....+..++...|+.+.+...+.. .
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~----------------------p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~ 60 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSS----------------------PERDVERDVFLYRAYLAQRKYGVVLDEIKP----S 60 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCS----------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----T
T ss_pred HHHHHHHHHHHHHHHHHhcccCC----------------------chhhHHHHHHHHHHHHHCCCHHHHHHHhcc----c
Confidence 34556799999999998876553 222 2334456788889999888865533 2
Q ss_pred CCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC----CC-ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHH
Q 047408 489 ISADRNVANAIVDMYVKCGVLVLARSLFDMIP----AK-DLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFI 563 (830)
Q Consensus 489 ~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~----~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~ 563 (830)
-+|+......+...|.+.|+.++|.+.++++. .| +...|..+...|.+.|++++|++.|++ ..+...+.
T Consensus 61 ~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~ 134 (291)
T 3mkr_A 61 SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMA 134 (291)
T ss_dssp SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHH
T ss_pred CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHH
Confidence 35677788899999999999999999999863 24 566778888999999999999999987 34556788
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchH---HHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHH
Q 047408 564 SVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHY---ACMVDLLSRTGNLSEAYRFIEMM--PVAPDATIWGSLLCGCR 638 (830)
Q Consensus 564 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y---~~lv~~l~r~g~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~ 638 (830)
.+...+.+.|++++|.+.|+.+... .|+...+ .+.+..+...|++++|.++|+++ ..+.+..+|+.+..++.
T Consensus 135 ~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~ 211 (291)
T 3mkr_A 135 MTVQILLKLDRLDLARKELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHM 211 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 8889999999999999999999854 4664321 23456666679999999999998 23357889999999999
Q ss_pred hcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHH-HHHHHHHHHh
Q 047408 639 IHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEE-VKKLREKISR 689 (830)
Q Consensus 639 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~-A~~~~~~m~~ 689 (830)
..|++++|+..++++++++|+++..+..++.++...|++++ +.++++++.+
T Consensus 212 ~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 212 AQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987 5678777764
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.58 E-value=2.1e-13 Score=144.57 Aligned_cols=239 Identities=10% Similarity=-0.034 Sum_probs=140.3
Q ss_pred CeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHH
Q 047408 332 SVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMD 411 (830)
Q Consensus 332 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~ 411 (830)
+...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+...+...|++++|.+.+..+++.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 33455666666777777777777777776542 2244455566666677777777777777776664 445677888888
Q ss_pred HHHhcCChHHHHHHHhcCCCCCch---hHHHHHHHHHHHHHHHhCCCCCccccccc-hh-hhcchhhHHHHHHHHHHHHH
Q 047408 412 MYAKCGSMADAESVFNQMPVKDIV---SWNTMIGALDLFVAMLQNFEPDGVTMACI-LP-ACASLAALERGREIHGYILR 486 (830)
Q Consensus 412 ~y~k~g~~~~A~~~f~~m~~~~~~---~~n~~i~al~~f~~m~~~~~pd~~t~~~l-l~-a~~~~~~~~~a~~i~~~~~~ 486 (830)
.|.+.|++++|.+.|+++...+.. .|..+.. ..|+......+ .. .+...|++++|...+..+++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 166 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQ-----------ADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALE 166 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC-------------------------------CCTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhH-----------HHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHh
Confidence 899999999998888776433210 0000000 00111111111 11 36677788888888887777
Q ss_pred hCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhHH
Q 047408 487 HGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPD-EVSF 562 (830)
Q Consensus 487 ~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~ 562 (830)
.. +.+..++..+...|.+.|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++.+. .|+ ..++
T Consensus 167 ~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~ 243 (327)
T 3cv0_A 167 MN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVM 243 (327)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHH
Confidence 64 3356666667777777777777776666543 234556666666666666666666666666553 233 3345
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhH
Q 047408 563 ISVLYACSHSGLVDEGWRFFNMMR 586 (830)
Q Consensus 563 ~~ll~a~~~~g~~~~a~~~~~~m~ 586 (830)
..+...+...|++++|.++|+.+.
T Consensus 244 ~~l~~~~~~~g~~~~A~~~~~~a~ 267 (327)
T 3cv0_A 244 YNMAVSYSNMSQYDLAAKQLVRAI 267 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHH
Confidence 555555555555555555555544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-13 Score=137.68 Aligned_cols=193 Identities=12% Similarity=0.026 Sum_probs=158.0
Q ss_pred CCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHH
Q 047408 490 SADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISV 565 (830)
Q Consensus 490 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~l 565 (830)
+++...+..+...|.+.|++++|...|++.. ..+...|..+...|.+.|++++|+..|++..+ +.|+.. .+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 4667788889999999999999999999764 44678999999999999999999999999998 567654 67788
Q ss_pred HHHHHcc-----------CCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 047408 566 LYACSHS-----------GLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPDATIWGS 632 (830)
Q Consensus 566 l~a~~~~-----------g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ 632 (830)
..++... |++++|...|+...+ +.|+ ...+..+..+|.+.|++++|++.+++. .+..+...|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8888999 999999999999874 4564 678889999999999999999999986 22277899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHH
Q 047408 633 LLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKI 687 (830)
Q Consensus 633 ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 687 (830)
+...+...|++++|+..++++++++|+++..+..++.+|...|++++|.+.+++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999886643
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=8.5e-13 Score=148.19 Aligned_cols=384 Identities=13% Similarity=0.002 Sum_probs=210.5
Q ss_pred cchHHHHHHHHHhCCChhHHHHHHHHHHHC-----C--CCC-ChhhHHHHHHHHhcCCChHHHHHHHHHHHHhC------
Q 047408 232 VVSWNCMISGYIANGVAEKGLEVFKEMLNL-----G--FNV-DLATMVTVLSGCANCGALMFGRAVHAFALKAC------ 297 (830)
Q Consensus 232 ~~~~n~li~~~~~~g~~~~A~~l~~~m~~~-----g--~~p-d~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g------ 297 (830)
...||.|...|...|++++|++.|++-.+. + ..| ...+|..+-..+...|+++.|...+..+++..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 446777777888888888888888765431 1 122 24466777777777788877777777665421
Q ss_pred CCC-CchHHHHHHHHhhc--CCChHHHHHHHhhcCC--C-CeehHHHHHHH---HHhcCChhHHHHHHHHHHHcCCCCCc
Q 047408 298 FSK-EISFNNTLLDMYSK--CGDLDGAIRVFEKMGE--R-SVVSWTSMIAG---YAREGVFDGAIRLFRGMVREGIEPDV 368 (830)
Q Consensus 298 ~~~-~~~~~~~Li~~y~k--~g~~~~A~~~f~~m~~--~-d~~~~~~li~~---~~~~g~~~~A~~l~~~m~~~g~~pd~ 368 (830)
..+ ...+++.+..++.+ .++.++|...|++..+ | +...+..+... +...++.++|++.|++..+. .|+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CSSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CCcc
Confidence 111 12334433334443 3467888888887643 3 34445544444 33457778888888887764 3443
Q ss_pred -chHHHHHHHh----hccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHH
Q 047408 369 -YAITSILHAC----ACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGA 443 (830)
Q Consensus 369 -~t~~~ll~a~----~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~a 443 (830)
.++..+...+ ...++.++|.+.+....+.. +.+..++..+...|.+.|++++|...|++..+.+
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---------- 277 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI---------- 277 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----------
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC----------
Confidence 3343333333 33467788888888887765 4566778888899999999999988887764332
Q ss_pred HHHHHHHHhCCCCCcc-ccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC--
Q 047408 444 LDLFVAMLQNFEPDGV-TMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP-- 520 (830)
Q Consensus 444 l~~f~~m~~~~~pd~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~-- 520 (830)
|+.. ++..+...+...+ ... ... ....+.......+..+.|...|+...
T Consensus 278 ------------p~~~~~~~~lg~~y~~~~-----~~~----~~~-------~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 329 (472)
T 4g1t_A 278 ------------PNNAYLHCQIGCCYRAKV-----FQV----MNL-------RENGMYGKRKLLELIGHAVAHLKKADEA 329 (472)
T ss_dssp ------------TTCHHHHHHHHHHHHHHH-----HHH----HHC-------------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------CChHHHHHHHHHHHHHHH-----HHh----hhH-------HHHHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 2221 1111111110000 000 000 00001111112233566666666543
Q ss_pred -CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh--HHHHHHH-HHHccCCHHHHHHHHHHhHhhcCCCCCcc
Q 047408 521 -AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV--SFISVLY-ACSHSGLVDEGWRFFNMMRYECNIEPKLE 596 (830)
Q Consensus 521 -~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~--t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 596 (830)
..+..+|..+...|...|++++|++.|++.++....|... .+..+.. ...+.|+.++|+..|.... .+.|+..
T Consensus 330 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal---~i~~~~~ 406 (472)
T 4g1t_A 330 NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV---KINQKSR 406 (472)
T ss_dssp CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH---HSCCCCH
T ss_pred CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCcccH
Confidence 4456788888999999999999999999988853333222 1222222 3457889999999998876 4566543
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 047408 597 HYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLA 668 (830)
Q Consensus 597 ~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~ 668 (830)
...-. ++.+.++++.. ...| ++.+|..|...+...|++++|+..+++++++.|.+|.++.-++
T Consensus 407 ~~~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 407 EKEKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 32222 23333444332 2234 5678999999999999999999999999999999887766554
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.52 E-value=3e-13 Score=137.92 Aligned_cols=215 Identities=12% Similarity=0.004 Sum_probs=187.6
Q ss_pred cccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCC--C-C-------hhhHHHH
Q 047408 461 MACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPA--K-D-------LISWTIM 530 (830)
Q Consensus 461 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d-------~~~~~~l 530 (830)
+..+...+...|++++|...+..+++.. .+..++..+...|.+.|++++|...|++... | + ...|..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 4455667788999999999999999988 7888999999999999999999999997652 1 1 5789999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcC
Q 047408 531 IAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTG 609 (830)
Q Consensus 531 i~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g 609 (830)
...|...|++++|++.|++..+ +.|+. ..+...|++++|.+.++.+.. ..| +...+..+...+.+.|
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~--~~~~~-------~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLT--EHRTA-------DILTKLRNAEKELKKAEAEAY---VNPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCCCH-------HHHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcccHHHHHHHHHHHHh--cCchh-------HHHHHHhHHHHHHHHHHHHHH---cCcchHHHHHHHHHHHHHhc
Confidence 9999999999999999999998 45664 345667889999999999874 345 3677889999999999
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHH
Q 047408 610 NLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKI 687 (830)
Q Consensus 610 ~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 687 (830)
++++|.+.+++. ...| +..+|..+...+...|++++|...+++++++.|+++..+..++.+|...|++++|.+.++..
T Consensus 154 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999987 3334 57889999999999999999999999999999999999999999999999999999999887
Q ss_pred Hh
Q 047408 688 SR 689 (830)
Q Consensus 688 ~~ 689 (830)
.+
T Consensus 234 ~~ 235 (258)
T 3uq3_A 234 RT 235 (258)
T ss_dssp HH
T ss_pred HH
Confidence 65
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.44 E-value=2.4e-12 Score=132.75 Aligned_cols=240 Identities=10% Similarity=-0.098 Sum_probs=178.2
Q ss_pred cCcchhhhhHHHHHHhhcC---CCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCC
Q 047408 381 DGLLEIGKDVHDYIKENDM---QSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPD 457 (830)
Q Consensus 381 ~~~~~~a~~~~~~~~~~g~---~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd 457 (830)
.+++++|...+..+++... +.+..++..+...|...|++++|...|++....
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------------------------- 72 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI------------------------- 72 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc-------------------------
Confidence 3555555555555555421 123556677777788888888877777654221
Q ss_pred ccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHH
Q 047408 458 GVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGY 534 (830)
Q Consensus 458 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~ 534 (830)
. +.+..++..+...|.+.|++++|...|++.. ..+...|..+...|
T Consensus 73 ------------------------------~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 121 (275)
T 1xnf_A 73 ------------------------------R-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 121 (275)
T ss_dssp ------------------------------C-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred ------------------------------C-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHH
Confidence 1 3356677778888888899999888888764 34678899999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHH
Q 047408 535 GMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEA 614 (830)
Q Consensus 535 ~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA 614 (830)
...|++++|++.|+++.+ ..|+.......+..+...|++++|..+++..... ..++...+ .++..+...+..++|
T Consensus 122 ~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~a 196 (275)
T 1xnf_A 122 YYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK--SDKEQWGW-NIVEFYLGNISEQTL 196 (275)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--SCCCSTHH-HHHHHHTTSSCHHHH
T ss_pred HHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCcchHHH-HHHHHHHHhcCHHHH
Confidence 999999999999999998 5677766666666677889999999999877643 22333444 477788888999999
Q ss_pred HHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHH
Q 047408 615 YRFIEMM-PVAPD-----ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLR 684 (830)
Q Consensus 615 ~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~ 684 (830)
.+.+++. ...|+ ..+|..+...+...|++++|...++++++++|++... .+..+...|++++|.+.+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 197 MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred HHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence 9999886 33332 5788999999999999999999999999999987544 467888999999987764
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.4e-12 Score=134.36 Aligned_cols=245 Identities=13% Similarity=0.010 Sum_probs=164.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHH
Q 047408 406 SNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYIL 485 (830)
Q Consensus 406 ~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 485 (830)
...+...|.+.|++++|...|++..+.+ +.+...+..+...+...|++++|.+.+..++
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~---------------------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 64 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK---------------------YNSPYIYNRRAVCYYELAKYDLAQKDIETYF 64 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT---------------------CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC---------------------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3445566667777777777766654332 1223355555566667777777777777776
Q ss_pred HhCCCCc--hhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh
Q 047408 486 RHGISAD--RNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV 560 (830)
Q Consensus 486 ~~g~~~~--~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~ 560 (830)
+.+-.++ ...+..+...|.+.|++++|.+.|++.. ..+...|..+...|...|++++|++.|++..+. .|+..
T Consensus 65 ~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~ 142 (272)
T 3u4t_A 65 SKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDP 142 (272)
T ss_dssp TTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCH
T ss_pred hccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcH
Confidence 6331121 2346778888888888888888888654 345678888888888888888888888888773 56555
Q ss_pred -HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCC---HHHHHHHHHhC----CCCCC-----
Q 047408 561 -SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGN---LSEAYRFIEMM----PVAPD----- 626 (830)
Q Consensus 561 -t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~---~~eA~~~~~~m----~~~p~----- 626 (830)
.+..+...+...+++++|.+.|+.+.+ +.|+ ...+..+..++...|+ +++|.+.+++. ...|+
T Consensus 143 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 219 (272)
T 3u4t_A 143 KVFYELGQAYYYNKEYVKADSSFVKVLE---LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDE 219 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHH
Confidence 344444255556688888888888764 3454 5666677777777777 66676666654 11233
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcC
Q 047408 627 -ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEK 676 (830)
Q Consensus 627 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 676 (830)
..+|..+...+...|++++|...++++++++|+++.+...+..+....+.
T Consensus 220 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 270 (272)
T 3u4t_A 220 LIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHH 270 (272)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccccc
Confidence 25777888889999999999999999999999998887777766655443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-11 Score=125.99 Aligned_cols=194 Identities=8% Similarity=-0.049 Sum_probs=167.9
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHH
Q 047408 493 RNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEP-DEVSFISVLYA 568 (830)
Q Consensus 493 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-d~~t~~~ll~a 568 (830)
...+..+...|...|++++|...|+++. ..+...|..+...|...|++++|++.|+++.+. .| +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHH
Confidence 5667788889999999999999998764 446778999999999999999999999999885 44 45577888888
Q ss_pred HHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 047408 569 CSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKL 645 (830)
Q Consensus 569 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 645 (830)
+...|++++|.++|+.+.. .+..|+ ...+..++..|.+.|++++|.+.++++ ...| +..+|..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999875 235563 677888999999999999999999886 3344 57889999999999999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 646 AEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 646 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
|...++++++..|++...+..++.+|...|++++|.+.++.+.+
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998875
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.8e-11 Score=121.60 Aligned_cols=196 Identities=9% Similarity=0.019 Sum_probs=167.2
Q ss_pred CchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHH
Q 047408 491 ADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEP-DEVSFISVL 566 (830)
Q Consensus 491 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-d~~t~~~ll 566 (830)
.+..++..+...|.+.|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++.+. .| +..++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~ 83 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI--KPDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCChHHHHHHH
Confidence 356677888899999999999999998764 446778999999999999999999999999884 44 455788888
Q ss_pred HHHHcc-CCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 047408 567 YACSHS-GLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHE 642 (830)
Q Consensus 567 ~a~~~~-g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 642 (830)
..+... |++++|..+|+.+.. .+..|+ ...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence 889999 999999999999875 334444 567888999999999999999999886 3344 47888999999999999
Q ss_pred HHHHHHHHHHHhccCC-CCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 643 VKLAEKVAEHVFELEP-DNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 643 ~~~a~~~~~~~~~l~p-~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
+++|...++++++..| +++..+..++.++...|+.++|..+++.+.+
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 9999999999999999 8999999999999999999999999888764
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.4e-10 Score=129.19 Aligned_cols=342 Identities=9% Similarity=-0.025 Sum_probs=210.8
Q ss_pred HHHHHHhhcCCCh---HHHHHHHhhcCCCCeehHHHHHHHHHhcC-----ChhHHHHHHHHHHHcCCCCCcchHHHHHHH
Q 047408 306 NTLLDMYSKCGDL---DGAIRVFEKMGERSVVSWTSMIAGYAREG-----VFDGAIRLFRGMVREGIEPDVYAITSILHA 377 (830)
Q Consensus 306 ~~Li~~y~k~g~~---~~A~~~f~~m~~~d~~~~~~li~~~~~~g-----~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 377 (830)
..|-.+|...|+. ++|.+.|++..+.+...+..+...+...| ++++|+..|++..+.|.. ..+..+-..
T Consensus 39 ~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~ 115 (452)
T 3e4b_A 39 VGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAML 115 (452)
T ss_dssp GTCC----------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHH
T ss_pred HHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHH
Confidence 3455556666777 89999998887777778888877666665 678999999999886632 255666666
Q ss_pred hhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHH----HHHhcCCCCCchhHHHHHHHHHHHHHHHhC
Q 047408 378 CACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAE----SVFNQMPVKDIVSWNTMIGALDLFVAMLQN 453 (830)
Q Consensus 378 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~----~~f~~m~~~~~~~~n~~i~al~~f~~m~~~ 453 (830)
+...+..+.+...+..+.+..-..+......|..+|...+.++++. .+++.....+
T Consensus 116 y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~-------------------- 175 (452)
T 3e4b_A 116 YLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTT-------------------- 175 (452)
T ss_dssp HHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTC--------------------
T ss_pred HHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCC--------------------
Confidence 6665555444444444433222224567778889998888655444 4444433332
Q ss_pred CCCCccccccchhhhcchh---hHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhc----CCHHHHHHHhhhCCCCChhh
Q 047408 454 FEPDGVTMACILPACASLA---ALERGREIHGYILRHGISADRNVANAIVDMYVKC----GVLVLARSLFDMIPAKDLIS 526 (830)
Q Consensus 454 ~~pd~~t~~~ll~a~~~~~---~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~----g~~~~A~~~f~~m~~~d~~~ 526 (830)
|+ .+..+-..+...| +.++|.+.+....+.| +++...+..|..+|... ++.++|.+.|++....+...
T Consensus 176 --~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a 250 (452)
T 3e4b_A 176 --DI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPAS 250 (452)
T ss_dssp --TT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHH
T ss_pred --HH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHH
Confidence 33 5555556666677 8899999999998888 45555556778888665 78999999998877446677
Q ss_pred HHHHHHH-H--HhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccC-----CHHHHHHHHHHhHhhcCCCCCcchH
Q 047408 527 WTIMIAG-Y--GMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSG-----LVDEGWRFFNMMRYECNIEPKLEHY 598 (830)
Q Consensus 527 ~~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~~~p~~~~y 598 (830)
+..+... | ...|+.++|++.|++..+.| +......+...+. .| ++++|.++|+... .-+...+
T Consensus 251 ~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~ 321 (452)
T 3e4b_A 251 WVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAAD 321 (452)
T ss_dssp HHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHH
Confidence 8877776 4 56889999999999998876 4555666666565 55 8999999998764 2345667
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 047408 599 ACMVDLLSR----TGNLSEAYRFIEMMPVAPDATIWGSLLCGCRI----HHEVKLAEKVAEHVFELEPDNTGYYVLLANV 670 (830)
Q Consensus 599 ~~lv~~l~r----~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 670 (830)
..|..+|.. ..+.++|.+.+++.--.-+......|...|.. ..|.++|...++++.+..+..+ ...+..+
T Consensus 322 ~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a--~~~l~~l 399 (452)
T 3e4b_A 322 YYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEA--NDLATQL 399 (452)
T ss_dssp HHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHH--HHHHHHH
T ss_pred HHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHH--HHHHHHH
Confidence 777777766 34889999999887323344445555555542 4589999999999888765433 3344444
Q ss_pred H--hhhcCHHHHHHHHHH
Q 047408 671 Y--AEAEKWEEVKKLREK 686 (830)
Q Consensus 671 y--~~~g~~~~A~~~~~~ 686 (830)
. ...++.++|.++.+.
T Consensus 400 ~~~~~~~~~~~a~~~~~~ 417 (452)
T 3e4b_A 400 EAPLTPAQRAEGQRLVQQ 417 (452)
T ss_dssp HTTCCHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHH
Confidence 3 233455566555444
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.8e-11 Score=124.58 Aligned_cols=232 Identities=11% Similarity=0.019 Sum_probs=137.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCC--c----hhhHHH
Q 047408 335 SWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQS--S----LYVSNA 408 (830)
Q Consensus 335 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~--~----~~~~~~ 408 (830)
.|..+...+...|++++|+..|++..+.. .+..++..+...+...|++++|...+..+++..... + ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 56667777778888888888888877765 666667777777777777777777777766543111 1 466777
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhC
Q 047408 409 LMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHG 488 (830)
Q Consensus 409 Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 488 (830)
+...|.+.|++++|...|++....+ |+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~----------------------~~------------------------------- 111 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH----------------------RT------------------------------- 111 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC----------------------CC-------------------------------
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC----------------------ch-------------------------------
Confidence 7777778888887777776543211 11
Q ss_pred CCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHH
Q 047408 489 ISADRNVANAIVDMYVKCGVLVLARSLFDMIPA---KDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISV 565 (830)
Q Consensus 489 ~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~l 565 (830)
.+.+.+.|++++|...|+.+.. .+...|..+...|...|++++|++.|++..+. .|+
T Consensus 112 -----------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~------- 171 (258)
T 3uq3_A 112 -----------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APE------- 171 (258)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-------
T ss_pred -----------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--Ccc-------
Confidence 0122333333333333333221 12234444445555555555555555555442 122
Q ss_pred HHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 047408 566 LYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEV 643 (830)
Q Consensus 566 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~ 643 (830)
+...|..+...|.+.|++++|.+.+++. ...| +..+|..+...+...|+.
T Consensus 172 ----------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~ 223 (258)
T 3uq3_A 172 ----------------------------DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEY 223 (258)
T ss_dssp ----------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred ----------------------------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhH
Confidence 2344555555555666666666555554 2233 356777777777888888
Q ss_pred HHHHHHHHHHhccC------CCCcchHHHHHH
Q 047408 644 KLAEKVAEHVFELE------PDNTGYYVLLAN 669 (830)
Q Consensus 644 ~~a~~~~~~~~~l~------p~~~~~~~~l~~ 669 (830)
++|...+++++++. |++...+..|..
T Consensus 224 ~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 224 ASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 88888888888777 766655555543
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=2.5e-11 Score=125.06 Aligned_cols=219 Identities=10% Similarity=-0.040 Sum_probs=181.5
Q ss_pred hhhcchhhHHHHHHHHHHHHHhCCC---CchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCC
Q 047408 466 PACASLAALERGREIHGYILRHGIS---ADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGF 539 (830)
Q Consensus 466 ~a~~~~~~~~~a~~i~~~~~~~g~~---~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~ 539 (830)
......+++++|...+..+++.... .+..++..+...|.+.|++++|...|++.. ..+...|..+...|...|+
T Consensus 13 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 13 VPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN 92 (275)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC
T ss_pred eccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccC
Confidence 3455679999999999999986422 246788899999999999999999999864 4568899999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 047408 540 GCDAIATFNDMRQAGIEPD-EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFI 618 (830)
Q Consensus 540 ~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~ 618 (830)
+++|++.|++..+. .|+ ...+..+...+...|++++|.++|+.+.. +.|+..........+.+.|++++|.+.+
T Consensus 93 ~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 167 (275)
T 1xnf_A 93 FDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ---DDPNDPFRSLWLYLAEQKLDEKQAKEVL 167 (275)
T ss_dssp HHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--CccccHHHHHHHHHHHHhccHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999999984 554 55788888999999999999999999874 4566655566666777889999999999
Q ss_pred HhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC----CcchHHHHHHHHhhhcCHHHHHHHHHHHHhC
Q 047408 619 EMM-P-VAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPD----NTGYYVLLANVYAEAEKWEEVKKLREKISRR 690 (830)
Q Consensus 619 ~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~----~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~ 690 (830)
++. . .+++...|. ++..+...++.+.|...++++++..|. ++..+..++.+|...|++++|.+.+++..+.
T Consensus 168 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 168 KQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 765 2 233444454 677788888999999999999988774 3678999999999999999999999988763
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.35 E-value=1.3e-11 Score=133.26 Aligned_cols=220 Identities=10% Similarity=0.058 Sum_probs=185.8
Q ss_pred cccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCC-HHHHHHHhhhCC---CCChhhHHHHHHHHHh
Q 047408 461 MACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGV-LVLARSLFDMIP---AKDLISWTIMIAGYGM 536 (830)
Q Consensus 461 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~-~~~A~~~f~~m~---~~d~~~~~~li~~~~~ 536 (830)
+..+...+...|+.++|.+.+..+++.. +.+..+++.+...|.+.|+ +++|...|++.. ..+...|+.+...|..
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~ 178 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW 178 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 4445556677889999999999999876 5578899999999999997 999999999875 4577899999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHh-cCCHHH
Q 047408 537 HGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSR-TGNLSE 613 (830)
Q Consensus 537 ~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r-~g~~~e 613 (830)
.|++++|+..|+++++ +.|+.. .|..+..++.+.|++++|+..|+.+.. +.|+ ...|..+..+|.+ .|..++
T Consensus 179 ~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 179 LRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred ccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcchH
Confidence 9999999999999998 567655 788888999999999999999999884 4564 6788899999999 677677
Q ss_pred H-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhc---------
Q 047408 614 A-----YRFIEMM-PVAP-DATIWGSLLCGCRIHH--EVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAE--------- 675 (830)
Q Consensus 614 A-----~~~~~~m-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g--------- 675 (830)
| ++.+++. .+.| +...|..+...+...| ++++|...++++ +.+|+++..+..|+++|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 7 4667665 4566 4689999999988888 689999999998 999999999999999999985
Q ss_pred CHHHHHHHHHHH
Q 047408 676 KWEEVKKLREKI 687 (830)
Q Consensus 676 ~~~~A~~~~~~m 687 (830)
..++|.++++.+
T Consensus 333 ~~~~A~~~~~~l 344 (382)
T 2h6f_A 333 ILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 358999998887
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.2e-11 Score=124.74 Aligned_cols=206 Identities=12% Similarity=0.034 Sum_probs=90.1
Q ss_pred ccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHh
Q 047408 460 TMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGM 536 (830)
Q Consensus 460 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~ 536 (830)
++..+...+...|++++|...+..+++.. +.+..++..+...|.+.|++++|...|+++. ..+...|..+...|..
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 103 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVV 103 (243)
T ss_dssp -----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence 34444444555555555555555555432 2334455555555555555555555555432 2234455555555555
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHH
Q 047408 537 HGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYR 616 (830)
Q Consensus 537 ~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~ 616 (830)
.|++++|++.|+++.+.. +.+...+..+...+...|++++|.++++.+.... ..+...+..+...|.+.|++++|.+
T Consensus 104 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 104 KEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN--ENDTEARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp TTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHH
Confidence 555555555555555421 1122334444444555555555555555544221 1123444445555555555555555
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 047408 617 FIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLAN 669 (830)
Q Consensus 617 ~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 669 (830)
.++++ ...| +..+|..+...+...|+.++|...++++++++|+++..+..++.
T Consensus 181 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 235 (243)
T 2q7f_A 181 QFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKL 235 (243)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHH
Confidence 55443 1122 24445555555555555555555555555555555444444433
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.33 E-value=5.5e-11 Score=120.84 Aligned_cols=204 Identities=10% Similarity=-0.003 Sum_probs=173.4
Q ss_pred cccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHH
Q 047408 459 VTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYG 535 (830)
Q Consensus 459 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~ 535 (830)
..+..+...+...|++++|.+.+..+++.. +.+..++..+...|.+.|++++|.+.|+++. ..+...|..+...|.
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 345556667788899999999999998875 4568889999999999999999999999764 447788999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHH
Q 047408 536 MHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSE 613 (830)
Q Consensus 536 ~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~e 613 (830)
..|++++|++.|+++.+.+..|+.. .+..+...+...|++++|.++|+.+... .| +...+..++.+|.+.|++++
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL---NRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998854567554 6777888999999999999999998753 34 46788899999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHH
Q 047408 614 AYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVL 666 (830)
Q Consensus 614 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 666 (830)
|.+.++++ ...| +...|..+...+...|+.++|...+++++++.|+++.....
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 248 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEF 248 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 99999987 4444 56788888889999999999999999999999998765443
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.33 E-value=6.4e-12 Score=140.87 Aligned_cols=207 Identities=9% Similarity=-0.038 Sum_probs=179.5
Q ss_pred hhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCH-HHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHH
Q 047408 472 AALERGREIHGYILRHGISADRNVANAIVDMYVKCGVL-VLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATF 547 (830)
Q Consensus 472 ~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~-~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~ 547 (830)
..++.+.+.+....+.. +.+...+..+...|...|++ ++|.+.|++.. ..+...|..+...|...|++++|++.|
T Consensus 82 ~~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34566666666544432 45788889999999999999 99999999764 446789999999999999999999999
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHcc---------CCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhc--------C
Q 047408 548 NDMRQAGIEPDEVSFISVLYACSHS---------GLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRT--------G 609 (830)
Q Consensus 548 ~~m~~~g~~Pd~~t~~~ll~a~~~~---------g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~--------g 609 (830)
++..+ +.|+...+..+..++... |++++|.+.|+.... +.|+ ...|..+..+|.+. |
T Consensus 161 ~~al~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~~~~g 235 (474)
T 4abn_A 161 SGALT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ---MDVLDGRSWYILGNAYLSLYFNTGQNPK 235 (474)
T ss_dssp HHHHT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHhhccccc
Confidence 99998 578877888888999999 999999999999874 3464 67888999999998 9
Q ss_pred CHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHH
Q 047408 610 NLSEAYRFIEMM-PVAP----DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLR 684 (830)
Q Consensus 610 ~~~eA~~~~~~m-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~ 684 (830)
++++|++.+++. .+.| +...|..+...+...|++++|...++++++++|+++..+..++.++...|++++|.+..
T Consensus 236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999987 4456 67899999999999999999999999999999999999999999999999999998754
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.1e-11 Score=119.02 Aligned_cols=206 Identities=8% Similarity=-0.055 Sum_probs=173.8
Q ss_pred cccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHH
Q 047408 459 VTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYG 535 (830)
Q Consensus 459 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~ 535 (830)
..+..+...+...|++++|.+.+..+++.. +.+..++..+...|...|++++|.+.|+++. ..+...|..+...|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 345566777888999999999999998865 4568889999999999999999999999764 446788999999999
Q ss_pred hc-CChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHH
Q 047408 536 MH-GFGCDAIATFNDMRQAGIEPDE-VSFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLS 612 (830)
Q Consensus 536 ~~-g~~~~A~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~ 612 (830)
.. |++++|++.|+++.+.+..|+. ..+..+..++...|++++|..+|+.+... .| +...+..++.+|.+.|+++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHH
Confidence 99 9999999999999984445554 46778888999999999999999998743 34 3678889999999999999
Q ss_pred HHHHHHHhC-CCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 047408 613 EAYRFIEMM-PVA--PDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLA 668 (830)
Q Consensus 613 eA~~~~~~m-~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~ 668 (830)
+|.+.++++ ... .+...|..+...+...|+.+.+...++.+.+..|+++.....+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 223 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVLT 223 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHhc
Confidence 999999987 333 35677777777789999999999999999999999987765553
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-11 Score=124.66 Aligned_cols=195 Identities=11% Similarity=0.025 Sum_probs=152.9
Q ss_pred CchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHH
Q 047408 491 ADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEP-DEVSFISVL 566 (830)
Q Consensus 491 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-d~~t~~~ll 566 (830)
.....+..+...|.+.|++++|...|+++. ..+...|..+...|...|++++|++.|+++.+. .| +...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHHH
Confidence 355677788889999999999999999874 346788999999999999999999999999985 44 455788888
Q ss_pred HHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 047408 567 YACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVK 644 (830)
Q Consensus 567 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~ 644 (830)
..+...|++++|.++|+.+.+.. ..+...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999987542 224677889999999999999999999987 3334 6788999999999999999
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 645 LAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 645 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
+|+..++++++..|+++..+..++.+|...|++++|.+.++++.+
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999998875
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.33 E-value=8e-12 Score=135.00 Aligned_cols=245 Identities=9% Similarity=0.008 Sum_probs=200.4
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhh-HHHHHHHH
Q 047408 403 LYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAA-LERGREIH 481 (830)
Q Consensus 403 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~-~~~a~~i~ 481 (830)
..+++.+...|.+.|++++|...|++....+. -+...+..+..++...|+ +++|...+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P---------------------~~~~a~~~~g~~l~~~g~d~~eAl~~~ 155 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNA---------------------ANYTVWHFRRVLLKSLQKDLHEEMNYI 155 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT---------------------TCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc---------------------cCHHHHHHHHHHHHHcccCHHHHHHHH
Confidence 45677888888999999999999887654431 234455666677778886 99999999
Q ss_pred HHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 047408 482 GYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPD 558 (830)
Q Consensus 482 ~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd 558 (830)
..+++.. +.+..+|+.+...|.+.|++++|...|+++. ..+...|..+...+...|++++|++.|+++++ +.|+
T Consensus 156 ~~al~l~-P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~ 232 (382)
T 2h6f_A 156 TAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVR 232 (382)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTT
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCC
Confidence 9999876 4578899999999999999999999999875 55788999999999999999999999999999 5676
Q ss_pred hh-HHHHHHHHHHc-cCCHHHH-----HHHHHHhHhhcCCCCC-cchHHHHHHHHHhcC--CHHHHHHHHHhCCCCCC-H
Q 047408 559 EV-SFISVLYACSH-SGLVDEG-----WRFFNMMRYECNIEPK-LEHYACMVDLLSRTG--NLSEAYRFIEMMPVAPD-A 627 (830)
Q Consensus 559 ~~-t~~~ll~a~~~-~g~~~~a-----~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g--~~~eA~~~~~~m~~~p~-~ 627 (830)
.. .+..+..++.+ .|..++| ++.|+... .+.|+ ...|..+..+|.+.| ++++|+++++++...|+ .
T Consensus 233 ~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al---~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~ 309 (382)
T 2h6f_A 233 NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMI---KLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSP 309 (382)
T ss_dssp CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHH---HHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCH
T ss_pred CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCH
Confidence 54 68888888888 6665777 57888776 35675 678888999999988 69999999998866664 6
Q ss_pred HHHHHHHHHHHhcC---------CHHHHHHHHHHH-hccCCCCcchHHHHHHHHhhh
Q 047408 628 TIWGSLLCGCRIHH---------EVKLAEKVAEHV-FELEPDNTGYYVLLANVYAEA 674 (830)
Q Consensus 628 ~~~~~ll~~~~~~g---------~~~~a~~~~~~~-~~l~p~~~~~~~~l~~~y~~~ 674 (830)
.++..|...+...| .+++|+.+++++ .+++|.....|..++..+...
T Consensus 310 ~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 310 YLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 78888888887764 359999999999 999999998888887766543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.31 E-value=5.2e-11 Score=114.71 Aligned_cols=162 Identities=13% Similarity=0.068 Sum_probs=124.8
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHH
Q 047408 523 DLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYAC 600 (830)
Q Consensus 523 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~ 600 (830)
+...|..+...|.+.|++++|++.|++.++ +.|+.. ++..+..++.+.|++++|...+...... .| +...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHHH
Confidence 445677777777777777777777777776 456554 5666777777888888888877776532 33 3456666
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHH
Q 047408 601 MVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWE 678 (830)
Q Consensus 601 lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 678 (830)
+...+...+++++|.+.+++. ...| +..+|..+...+...|++++|+..++++++++|+++..|..++.+|.+.|+++
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 777788888888888887775 3344 46778888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 047408 679 EVKKLREKISR 689 (830)
Q Consensus 679 ~A~~~~~~m~~ 689 (830)
+|.+.+++..+
T Consensus 159 ~A~~~~~~al~ 169 (184)
T 3vtx_A 159 EAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99998887764
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.31 E-value=5.3e-11 Score=122.41 Aligned_cols=222 Identities=8% Similarity=-0.048 Sum_probs=177.1
Q ss_pred ccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCC--CCh----hhHHHHHHHHH
Q 047408 462 ACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPA--KDL----ISWTIMIAGYG 535 (830)
Q Consensus 462 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d~----~~~~~li~~~~ 535 (830)
......+...|++++|...+..+++.. +.+..++..+...|.+.|++++|...|++... ++. .+|..+...|.
T Consensus 7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 7 FRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 344556778899999999999998865 34566888899999999999999999987643 222 24888999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHH
Q 047408 536 MHGFGCDAIATFNDMRQAGIEPDE-VSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSE 613 (830)
Q Consensus 536 ~~g~~~~A~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~e 613 (830)
..|++++|++.|++..+. .|+. ..+..+...+...|++++|.++|+... .+.|+ ...+..+...+...+++++
T Consensus 86 ~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al---~~~~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDR--DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI---RPTTTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGC---CSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HcccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHh---hcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999984 4544 478888899999999999999998876 44564 5667777734445569999
Q ss_pred HHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHhccC---CCC-----cchHHHHHHHHhhhcCHHHH
Q 047408 614 AYRFIEMM-PVAPD-ATIWGSLLCGCRIHHE---VKLAEKVAEHVFELE---PDN-----TGYYVLLANVYAEAEKWEEV 680 (830)
Q Consensus 614 A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~l~---p~~-----~~~~~~l~~~y~~~g~~~~A 680 (830)
|.+.++++ ...|+ ...|..+...+...|+ .++|...+++++++. |+. ...|..++.+|...|++++|
T Consensus 161 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 161 ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999887 44454 6778788888888888 888999999988765 442 25788899999999999999
Q ss_pred HHHHHHHHh
Q 047408 681 KKLREKISR 689 (830)
Q Consensus 681 ~~~~~~m~~ 689 (830)
.+.+++..+
T Consensus 241 ~~~~~~al~ 249 (272)
T 3u4t_A 241 DAAWKNILA 249 (272)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988775
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=2.1e-10 Score=118.33 Aligned_cols=221 Identities=10% Similarity=-0.050 Sum_probs=188.6
Q ss_pred cccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHh----cCCHHHHHHHhhhCC-CCChhhHHHHHHH
Q 047408 459 VTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVK----CGVLVLARSLFDMIP-AKDLISWTIMIAG 533 (830)
Q Consensus 459 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k----~g~~~~A~~~f~~m~-~~d~~~~~~li~~ 533 (830)
.++..+-..+...|++++|.+.+..+.+ +.+...+..|..+|.. .|++++|...|++.. ..+...|..+...
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 83 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNL 83 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3444555667788999999999999998 3456788889999999 999999999999765 3477889999999
Q ss_pred HHh----cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHc----cCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHH
Q 047408 534 YGM----HGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSH----SGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLL 605 (830)
Q Consensus 534 ~~~----~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l 605 (830)
|.. .|++++|++.|++..+.+ +...+..+...+.. .|++++|.++|+...+. + +...+..+..+|
T Consensus 84 ~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~ 156 (273)
T 1ouv_A 84 YYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLY 156 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHH
T ss_pred HhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHH
Confidence 999 999999999999999865 66778888888888 99999999999998753 3 456778888899
Q ss_pred Hh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhh----
Q 047408 606 SR----TGNLSEAYRFIEMMPVAPDATIWGSLLCGCRI----HHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAE---- 673 (830)
Q Consensus 606 ~r----~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~---- 673 (830)
.+ .|++++|.+.+++.--..+...+..+...+.. .+++++|...++++++.+| +..+..|+.+|..
T Consensus 157 ~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~ 234 (273)
T 1ouv_A 157 DAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGV 234 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSS
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCc
Confidence 88 99999999999987323457788888888988 9999999999999999877 6788999999999
Q ss_pred hcCHHHHHHHHHHHHhCC
Q 047408 674 AEKWEEVKKLREKISRRG 691 (830)
Q Consensus 674 ~g~~~~A~~~~~~m~~~g 691 (830)
.|++++|.+.+++..+.|
T Consensus 235 ~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 235 TRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp SCCSTTHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHcC
Confidence 999999999999887654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.28 E-value=3.6e-11 Score=119.48 Aligned_cols=156 Identities=14% Similarity=0.106 Sum_probs=75.3
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhc-----------CChHHHHHHHHHHHHcCCCCC
Q 047408 493 RNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMH-----------GFGCDAIATFNDMRQAGIEPD 558 (830)
Q Consensus 493 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~-----------g~~~~A~~l~~~m~~~g~~Pd 558 (830)
...+..+...|.+.|++++|...|++.. ..+...|..+...|... |++++|+..|++..+ +.|+
T Consensus 39 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~P~ 116 (217)
T 2pl2_A 39 PEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAER--VNPR 116 (217)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH--HCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH--hCcc
Confidence 3444444445555555555555554432 22334455555555555 666666666666655 3444
Q ss_pred hh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 047408 559 EV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLC 635 (830)
Q Consensus 559 ~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~ 635 (830)
.. .+..+..++...|++++|+..|+...+. . .+...+..+..+|...|++++|.+.+++. ...| +..+|..+..
T Consensus 117 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~ 193 (217)
T 2pl2_A 117 YAPLHLQRGLVYALLGERDKAEASLKQALAL-E--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYAS 193 (217)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 32 4445555556666666666666655533 2 44555556666666666666666666554 2333 3455556666
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 047408 636 GCRIHHEVKLAEKVAEHV 653 (830)
Q Consensus 636 ~~~~~g~~~~a~~~~~~~ 653 (830)
.+...|++++|...++++
T Consensus 194 ~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 194 ALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHTC--------------
T ss_pred HHHHccCHHHHHHHHHHH
Confidence 666666666666655543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=7.3e-11 Score=129.05 Aligned_cols=292 Identities=10% Similarity=-0.013 Sum_probs=176.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc-----chHHHHHHHhhccCcchhhhhHHHHHHhh----cC-CCchh
Q 047408 335 SWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDV-----YAITSILHACACDGLLEIGKDVHDYIKEN----DM-QSSLY 404 (830)
Q Consensus 335 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----g~-~~~~~ 404 (830)
.|......+...|++++|+..|++..+. .|+. ..+..+...+...|+++.|...+..+++. +- +....
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 3444455555666666666666666554 2221 23444444555555655555555554332 11 11245
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHH
Q 047408 405 VSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYI 484 (830)
Q Consensus 405 ~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~ 484 (830)
++..+...|...|++++|...|++... ++... ++.
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~--------------~~~~~-----~~~-------------------------- 123 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLD--------------ISREL-----NDK-------------------------- 123 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--------------HHHHH-----TCH--------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--------------HHHhc-----ccc--------------------------
Confidence 677788888888999988888765421 11110 000
Q ss_pred HHhCCCCchhHHhHHHHHHHhcCC--------------------HHHHHHHhhhCC-------CC--ChhhHHHHHHHHH
Q 047408 485 LRHGISADRNVANAIVDMYVKCGV--------------------LVLARSLFDMIP-------AK--DLISWTIMIAGYG 535 (830)
Q Consensus 485 ~~~g~~~~~~~~~~Li~~y~k~g~--------------------~~~A~~~f~~m~-------~~--d~~~~~~li~~~~ 535 (830)
.....++..+...|...|+ +++|...|++.. .+ ...+|+.+...|.
T Consensus 124 -----~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 198 (406)
T 3sf4_A 124 -----VGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHY 198 (406)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -----cchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence 0012233444444555555 555554444321 11 1235667777777
Q ss_pred hcCChHHHHHHHHHHHHcCC-CCC----hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHH
Q 047408 536 MHGFGCDAIATFNDMRQAGI-EPD----EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK----LEHYACMVDLLS 606 (830)
Q Consensus 536 ~~g~~~~A~~l~~~m~~~g~-~Pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lv~~l~ 606 (830)
..|++++|++.|++..+... .++ ..++..+...+...|++++|..+++.......-.++ ...+..+...|.
T Consensus 199 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 278 (406)
T 3sf4_A 199 LLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT 278 (406)
T ss_dssp HHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHH
Confidence 77888888888777764210 122 125666777788888888888888776532211111 456778888899
Q ss_pred hcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC------CCcchHHHHHHHHh
Q 047408 607 RTGNLSEAYRFIEMM----PVAPD----ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEP------DNTGYYVLLANVYA 672 (830)
Q Consensus 607 r~g~~~eA~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p------~~~~~~~~l~~~y~ 672 (830)
+.|++++|.+.+++. +..++ ..+|..+...+...|++++|...+++++++.+ .....+..++.+|.
T Consensus 279 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 358 (406)
T 3sf4_A 279 LLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQM 358 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHH
Confidence 999999998888775 11222 45788888889999999999999999987643 33456788888888
Q ss_pred hhcCHH
Q 047408 673 EAEKWE 678 (830)
Q Consensus 673 ~~g~~~ 678 (830)
..|+..
T Consensus 359 ~~g~~~ 364 (406)
T 3sf4_A 359 VLGLSY 364 (406)
T ss_dssp HHHTTS
T ss_pred HhhHhH
Confidence 888764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=3.1e-11 Score=140.90 Aligned_cols=161 Identities=15% Similarity=0.174 Sum_probs=134.8
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHH
Q 047408 523 DLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYAC 600 (830)
Q Consensus 523 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~ 600 (830)
+..+|+.|...|.+.|++++|++.|++.++ +.|+.. ++..+..++.+.|++++|++.|+... .+.|+ ...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al---~l~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI---RISPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHH
Confidence 345777788888888888888888888887 567654 67778888888888888888888876 34565 678888
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHH
Q 047408 601 MVDLLSRTGNLSEAYRFIEMM-PVAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWE 678 (830)
Q Consensus 601 lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 678 (830)
+..+|.+.|++++|++.+++. .+.|+ ..+|..|...+...|++++|+..++++++++|+++..|..|+.+|...|+|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 889999999999999988876 55664 6889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 047408 679 EVKKLREKIS 688 (830)
Q Consensus 679 ~A~~~~~~m~ 688 (830)
+|.+.+++..
T Consensus 163 ~A~~~~~kal 172 (723)
T 4gyw_A 163 DYDERMKKLV 172 (723)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988877654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.4e-10 Score=129.19 Aligned_cols=347 Identities=10% Similarity=-0.048 Sum_probs=220.8
Q ss_pred HHHHHhhcCCChHHHHHHHhhcCC-CCeehHHHHHHHHHhcCCh---hHHHHHHHHHHHcCCCCCcchHHHHHHHhhcc-
Q 047408 307 TLLDMYSKCGDLDGAIRVFEKMGE-RSVVSWTSMIAGYAREGVF---DGAIRLFRGMVREGIEPDVYAITSILHACACD- 381 (830)
Q Consensus 307 ~Li~~y~k~g~~~~A~~~f~~m~~-~d~~~~~~li~~~~~~g~~---~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~- 381 (830)
.+...+.+.|++++|.++|++..+ .+...+..+...|...|++ ++|+..|++..+. +...+..+-..+...
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC-
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCC
Confidence 356677888999999999988755 3566777777778888888 8999999988754 444444444433333
Q ss_pred ----CcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCC
Q 047408 382 ----GLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPD 457 (830)
Q Consensus 382 ----~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd 457 (830)
++.++|...+....+.|. ...+..|..+|...+..+++.+. ++.+......+ +
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a------------------~~~~~~a~~~g--~ 140 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNA------------------QQQISQWQAAG--Y 140 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCH------------------HHHHHHHHHHT--C
T ss_pred CCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHH------------------HHHHHHHHHCC--C
Confidence 377889999999988773 33777888888877765543222 22222222222 2
Q ss_pred ccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcC---CHHHHHHHhhhCC---CCChhhHHHHH
Q 047408 458 GVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCG---VLVLARSLFDMIP---AKDLISWTIMI 531 (830)
Q Consensus 458 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g---~~~~A~~~f~~m~---~~d~~~~~~li 531 (830)
......+...+...+.++.+..-...+.+.-...++..+..|..+|.+.| +.++|.+.|++.. .++...+..+.
T Consensus 141 ~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg 220 (452)
T 3e4b_A 141 PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVA 220 (452)
T ss_dssp TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 23344444445444533333322222222223344558888999999999 8999999998764 33444456777
Q ss_pred HHHHhc----CChHHHHHHHHHHHHcCCCCChhHHHHHHHH-H--HccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHH
Q 047408 532 AGYGMH----GFGCDAIATFNDMRQAGIEPDEVSFISVLYA-C--SHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDL 604 (830)
Q Consensus 532 ~~~~~~----g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a-~--~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~ 604 (830)
..|... ++.++|++.|++.. .| +...+..+... + ...|+.++|.++|+..... | +...+..|..+
T Consensus 221 ~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~ 292 (452)
T 3e4b_A 221 RVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKL 292 (452)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHH
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHH
Confidence 777554 68999999999987 32 33344455444 3 5689999999999987643 3 56677778888
Q ss_pred HHhcC-----CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhh--
Q 047408 605 LSRTG-----NLSEAYRFIEMMPVAPDATIWGSLLCGCRI----HHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAE-- 673 (830)
Q Consensus 605 l~r~g-----~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~-- 673 (830)
|. .| ++++|.+.|++.- .-++..+..|...|.. ..|.++|...++++.+ +.++.....|+.+|..
T Consensus 293 y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~ 368 (452)
T 3e4b_A 293 YY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGK 368 (452)
T ss_dssp HH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCT
T ss_pred HH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCC
Confidence 87 55 9999999999987 5577788777766655 3499999999999876 4567788899999985
Q ss_pred --hcCHHHHHHHHHHHHhCCC
Q 047408 674 --AEKWEEVKKLREKISRRGL 692 (830)
Q Consensus 674 --~g~~~~A~~~~~~m~~~g~ 692 (830)
..+.++|...++...+.|.
T Consensus 369 g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 369 GTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp TBCCCHHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHHHCCC
Confidence 4589999999998888775
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.2e-11 Score=135.91 Aligned_cols=227 Identities=11% Similarity=-0.048 Sum_probs=162.7
Q ss_pred cchhhhcchhhHHHHHHHHHHHHHh----CC-CCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCC---------ChhhHH
Q 047408 463 CILPACASLAALERGREIHGYILRH----GI-SADRNVANAIVDMYVKCGVLVLARSLFDMIPAK---------DLISWT 528 (830)
Q Consensus 463 ~ll~a~~~~~~~~~a~~i~~~~~~~----g~-~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~---------d~~~~~ 528 (830)
.+...+...|++++|...+..+++. +- +....++..+...|...|++++|...|++...- ...+|+
T Consensus 91 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 170 (411)
T 4a1s_A 91 QLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALY 170 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 3334444455555555555544332 11 123456777888888999999988888765311 234778
Q ss_pred HHHHHHHhcCC-----------------hHHHHHHHHHHHHc----CCCCCh-hHHHHHHHHHHccCCHHHHHHHHHHhH
Q 047408 529 IMIAGYGMHGF-----------------GCDAIATFNDMRQA----GIEPDE-VSFISVLYACSHSGLVDEGWRFFNMMR 586 (830)
Q Consensus 529 ~li~~~~~~g~-----------------~~~A~~l~~~m~~~----g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~ 586 (830)
.+...|...|+ +++|++.|++..+. +-.|.. .++..+...+...|++++|.++|+...
T Consensus 171 ~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 250 (411)
T 4a1s_A 171 NLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERL 250 (411)
T ss_dssp HHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 88888889999 89999988887542 212222 257777788899999999999998876
Q ss_pred hhcCCCCC----cchHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047408 587 YECNIEPK----LEHYACMVDLLSRTGNLSEAYRFIEMM----PVAPD----ATIWGSLLCGCRIHHEVKLAEKVAEHVF 654 (830)
Q Consensus 587 ~~~~~~p~----~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 654 (830)
....-.++ ...+..+..+|...|++++|.+.+++. +-..+ ..+|..+...+...|++++|...+++++
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 251 RIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 43211112 237788899999999999999998876 11112 4678888889999999999999999998
Q ss_pred ccCCCC------cchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 655 ELEPDN------TGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 655 ~l~p~~------~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
++.++. ...+..++.+|...|++++|.+.+++..+
T Consensus 331 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 331 AIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 875543 34788999999999999999999887764
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.8e-11 Score=131.30 Aligned_cols=227 Identities=12% Similarity=0.002 Sum_probs=167.9
Q ss_pred cchhhhcchhhHHHHHHHHHHHHHh----CCCC-chhHHhHHHHHHHhcCCHHHHHHHhhhCCC-----CC----hhhHH
Q 047408 463 CILPACASLAALERGREIHGYILRH----GISA-DRNVANAIVDMYVKCGVLVLARSLFDMIPA-----KD----LISWT 528 (830)
Q Consensus 463 ~ll~a~~~~~~~~~a~~i~~~~~~~----g~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~d----~~~~~ 528 (830)
.+...+...|+++.|...+..+++. +..+ ...++..+...|...|++++|...|++... ++ ..+|.
T Consensus 52 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 131 (406)
T 3sf4_A 52 QLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALY 131 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHH
Confidence 3334444455555555555444322 2111 255677888999999999999999886541 22 34788
Q ss_pred HHHHHHHhcCC--------------------hHHHHHHHHHHHHc----CCCCCh-hHHHHHHHHHHccCCHHHHHHHHH
Q 047408 529 IMIAGYGMHGF--------------------GCDAIATFNDMRQA----GIEPDE-VSFISVLYACSHSGLVDEGWRFFN 583 (830)
Q Consensus 529 ~li~~~~~~g~--------------------~~~A~~l~~~m~~~----g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~ 583 (830)
.+...|...|+ +++|++.|++.... +-.|.. .++..+...+...|++++|.++|+
T Consensus 132 ~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 211 (406)
T 3sf4_A 132 NLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHE 211 (406)
T ss_dssp HHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHH
T ss_pred HHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 89999999999 99999999987652 212222 257777888999999999999999
Q ss_pred HhHhhcCCCCC----cchHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 047408 584 MMRYECNIEPK----LEHYACMVDLLSRTGNLSEAYRFIEMM----PVAPD----ATIWGSLLCGCRIHHEVKLAEKVAE 651 (830)
Q Consensus 584 ~m~~~~~~~p~----~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~ 651 (830)
.......-.++ ...+..+..+|.+.|++++|.+.+++. +..++ ..++..+...+...|++++|...++
T Consensus 212 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 291 (406)
T 3sf4_A 212 QRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHL 291 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 87643222222 337888999999999999999999876 11122 4678888889999999999999999
Q ss_pred HHhccCCCC------cchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 652 HVFELEPDN------TGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 652 ~~~~l~p~~------~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
+++++.|.. +..+..++.+|...|++++|.+.+++..+
T Consensus 292 ~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 292 KHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 998875543 45788999999999999999999887654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=3.4e-10 Score=116.65 Aligned_cols=227 Identities=9% Similarity=-0.106 Sum_probs=177.6
Q ss_pred chhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcc----hhhHHHH
Q 047408 402 SLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACAS----LAALERG 477 (830)
Q Consensus 402 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~----~~~~~~a 477 (830)
+..++..+...|.+.|++++|...|++..+++ +...+..+...+.. .++.++|
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-----------------------~~~a~~~lg~~~~~g~~~~~~~~~A 61 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK-----------------------ENSGCFNLGVLYYQGQGVEKNLKKA 61 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----------------------CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-----------------------CHHHHHHHHHHHHcCCCcCCCHHHH
Confidence 34556667777777777777777776654332 12233334444555 7778888
Q ss_pred HHHHHHHHHhCCCCchhHHhHHHHHHHh----cCCHHHHHHHhhhCC-CCChhhHHHHHHHHHh----cCChHHHHHHHH
Q 047408 478 REIHGYILRHGISADRNVANAIVDMYVK----CGVLVLARSLFDMIP-AKDLISWTIMIAGYGM----HGFGCDAIATFN 548 (830)
Q Consensus 478 ~~i~~~~~~~g~~~~~~~~~~Li~~y~k----~g~~~~A~~~f~~m~-~~d~~~~~~li~~~~~----~g~~~~A~~l~~ 548 (830)
...+..+.+.+ +...+..|..+|.+ .|++++|...|++.. ..+..++..+...|.. .|++++|++.|+
T Consensus 62 ~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~ 138 (273)
T 1ouv_A 62 ASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFT 138 (273)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHH
Confidence 88888887765 67788889999999 999999999998765 3477889999999999 999999999999
Q ss_pred HHHHcCCCCChhHHHHHHHHHHc----cCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHh----cCCHHHHHHHHHh
Q 047408 549 DMRQAGIEPDEVSFISVLYACSH----SGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSR----TGNLSEAYRFIEM 620 (830)
Q Consensus 549 ~m~~~g~~Pd~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r----~g~~~eA~~~~~~ 620 (830)
+..+.+ +...+..+...+.. .+++++|..+|+...+. .+...+..+..+|.+ .|++++|.+.+++
T Consensus 139 ~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~ 211 (273)
T 1ouv_A 139 KACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSK 211 (273)
T ss_dssp HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHH
T ss_pred HHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHH
Confidence 999865 45566777777777 89999999999988743 245778889999999 9999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCCCc
Q 047408 621 MPVAPDATIWGSLLCGCRI----HHEVKLAEKVAEHVFELEPDNT 661 (830)
Q Consensus 621 m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~l~p~~~ 661 (830)
.--..+...+..|...+.. .++.++|...+++++++.|+++
T Consensus 212 a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 212 ACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp HHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred HHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 7222336778888888888 8999999999999999998754
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.22 E-value=7.6e-11 Score=124.80 Aligned_cols=263 Identities=12% Similarity=0.008 Sum_probs=198.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCC-----ccccccchhhhcchhhHHHHHH
Q 047408 405 VSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPD-----GVTMACILPACASLAALERGRE 479 (830)
Q Consensus 405 ~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd-----~~t~~~ll~a~~~~~~~~~a~~ 479 (830)
.+......+.+.|++++|...|++..+.+ |+ ...+..+...+...|+++.|.+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~----------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 64 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG----------------------TEDLKTLSAIYSQLGNAYFYLHDYAKALE 64 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------CSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC----------------------cccHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 34445677888899999998888764332 22 2345566677778889999988
Q ss_pred HHHHHHHh----CCCC-chhHHhHHHHHHHhcCCHHHHHHHhhhCC-----CCC----hhhHHHHHHHHHhcCC------
Q 047408 480 IHGYILRH----GISA-DRNVANAIVDMYVKCGVLVLARSLFDMIP-----AKD----LISWTIMIAGYGMHGF------ 539 (830)
Q Consensus 480 i~~~~~~~----g~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~m~-----~~d----~~~~~~li~~~~~~g~------ 539 (830)
.+..+++. +..+ ...++..+...|...|++++|...|++.. .++ ..+|..+...|...|+
T Consensus 65 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 144 (338)
T 3ro2_A 65 YHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPG 144 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSS
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccch
Confidence 88876543 2222 35677888999999999999999998753 122 3478888999999999
Q ss_pred --------------hHHHHHHHHHHHHc----CCCCCh-hHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC----cc
Q 047408 540 --------------GCDAIATFNDMRQA----GIEPDE-VSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK----LE 596 (830)
Q Consensus 540 --------------~~~A~~l~~~m~~~----g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~ 596 (830)
+++|++.|++.... +-.|.. .++..+...+...|++++|.++++.......-.++ ..
T Consensus 145 ~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 224 (338)
T 3ro2_A 145 PQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERR 224 (338)
T ss_dssp CC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 99999999887642 212222 25677778889999999999999987643221122 33
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC------cc
Q 047408 597 HYACMVDLLSRTGNLSEAYRFIEMM----PVAPD----ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDN------TG 662 (830)
Q Consensus 597 ~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~------~~ 662 (830)
.+..+...|.+.|++++|.+.+++. +..++ ..++..+...+...|++++|...+++++++.|.. ..
T Consensus 225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 304 (338)
T 3ro2_A 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 304 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 7888999999999999999999876 11222 4577888889999999999999999998876543 34
Q ss_pred hHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 663 YYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 663 ~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
.+..++.+|...|++++|.+.+++..+
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 305 ACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 788999999999999999999988765
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.6e-10 Score=114.06 Aligned_cols=185 Identities=11% Similarity=-0.050 Sum_probs=82.6
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHhhhCC---C-CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHH
Q 047408 493 RNVANAIVDMYVKCGVLVLARSLFDMIP---A-KDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLY 567 (830)
Q Consensus 493 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~-~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~ 567 (830)
+..+..+...|.+.|++++|...|++.. . ++...|..+...|...|++++|++.|++..+ ..|+.. .+..+..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHHH
Confidence 3444444555555555555555554332 1 3444444444555555555555555555544 334332 3444444
Q ss_pred HHHccCCHHHHHHHHHHhHhhcCCCCC-c-------chHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHH
Q 047408 568 ACSHSGLVDEGWRFFNMMRYECNIEPK-L-------EHYACMVDLLSRTGNLSEAYRFIEMM-PVAPD---ATIWGSLLC 635 (830)
Q Consensus 568 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~-------~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~---~~~~~~ll~ 635 (830)
.+...|++++|.+.|+..... .|+ . ..|..+...+.+.|++++|++.+++. ...|+ ...|..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 445555555555555544421 222 1 22344444444444444444444443 33333 123333333
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 636 GCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 636 ~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
.+. ..+...++++..+.+.++..|. .......|.+++|...+++..+
T Consensus 162 ~~~-----~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 162 LFY-----NNGADVLRKATPLASSNKEKYA--SEKAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHH-----HHHHHHHHHHGGGTTTCHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHHHhcccCCHHHHH--HHHHHHHHHHHHHHHHHHHHhh
Confidence 332 2233333444444433322221 1222333444888888777664
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.22 E-value=1.4e-10 Score=111.54 Aligned_cols=167 Identities=12% Similarity=0.025 Sum_probs=143.6
Q ss_pred CchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHH
Q 047408 491 ADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVL 566 (830)
Q Consensus 491 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll 566 (830)
.++.+|..|...|.+.|++++|.+.|++.. ..+..+|..+...|.+.|++++|++.+++.... .|+.. .+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 356789999999999999999999999764 457789999999999999999999999999884 45544 566667
Q ss_pred HHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 047408 567 YACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEV 643 (830)
Q Consensus 567 ~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~ 643 (830)
..+...++++++.+.+..... +.| +...+..+..+|.+.|++++|++.+++. .+.| +..+|..+...+...|++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIA---LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHH---hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCH
Confidence 788899999999999998874 345 4677889999999999999999999987 4455 578899999999999999
Q ss_pred HHHHHHHHHHhccCCCCcc
Q 047408 644 KLAEKVAEHVFELEPDNTG 662 (830)
Q Consensus 644 ~~a~~~~~~~~~l~p~~~~ 662 (830)
++|+..++++++++|+++.
T Consensus 158 ~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 158 DEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHhCCccCHH
Confidence 9999999999999998643
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.19 E-value=1.6e-09 Score=113.90 Aligned_cols=210 Identities=10% Similarity=0.011 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHHhCCCCchhHHhHHHHHHH-------hcCCH-------HHHHHHhhhCC----CCChhhHHHHHHHHHh
Q 047408 475 ERGREIHGYILRHGISADRNVANAIVDMYV-------KCGVL-------VLARSLFDMIP----AKDLISWTIMIAGYGM 536 (830)
Q Consensus 475 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~-------k~g~~-------~~A~~~f~~m~----~~d~~~~~~li~~~~~ 536 (830)
+.|..+++.+++.. +.++.+|..++..+. +.|++ ++|..+|++.. ..+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 57777888887754 567778888877775 35775 89999998653 2356689999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCChh--HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHH-hcCCHH
Q 047408 537 HGFGCDAIATFNDMRQAGIEPDEV--SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLS-RTGNLS 612 (830)
Q Consensus 537 ~g~~~~A~~l~~~m~~~g~~Pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~-r~g~~~ 612 (830)
.|++++|.++|++.++ +.|+.. .+..+...+.+.|++++|+.+|+...+ ..|+ ...|...+.... ..|+.+
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT---STTCCTHHHHHHHHHHHHTSCCHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHcCCHH
Confidence 9999999999999987 567654 688888888889999999999998873 3443 444444433322 369999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc---CCC-CcchHHHHHHHHhhhcCHHHHHHHHHH
Q 047408 613 EAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFEL---EPD-NTGYYVLLANVYAEAEKWEEVKKLREK 686 (830)
Q Consensus 613 eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l---~p~-~~~~~~~l~~~y~~~g~~~~A~~~~~~ 686 (830)
+|.++|++. ...| +...|..++..+...|+.+.|+.+++++++. .|+ ....+..+++.+.+.|++++|..+.+.
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999886 2233 5788999998899999999999999999985 554 566788889999999999999998888
Q ss_pred HHhC
Q 047408 687 ISRR 690 (830)
Q Consensus 687 m~~~ 690 (830)
+.+.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.4e-10 Score=127.98 Aligned_cols=176 Identities=9% Similarity=0.005 Sum_probs=154.6
Q ss_pred HHHHHHHhhhCC---CCChhhHHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHccCCHHHHHHHHH
Q 047408 509 LVLARSLFDMIP---AKDLISWTIMIAGYGMHGFG-CDAIATFNDMRQAGIEPD-EVSFISVLYACSHSGLVDEGWRFFN 583 (830)
Q Consensus 509 ~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~ 583 (830)
+++|...++... ..+...|..+...|...|++ ++|++.|++..+ ..|+ ...+..+..++...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK--LEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556666665443 34678899999999999999 999999999998 4666 4578888899999999999999999
Q ss_pred HhHhhcCCCCCcchHHHHHHHHHhc---------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------CCHH
Q 047408 584 MMRYECNIEPKLEHYACMVDLLSRT---------GNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIH--------HEVK 644 (830)
Q Consensus 584 ~m~~~~~~~p~~~~y~~lv~~l~r~---------g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~--------g~~~ 644 (830)
... .+.|+...+..+..+|.+. |++++|++.+++. ...| +...|..+..++... |+++
T Consensus 162 ~al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GAL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 987 5678888899999999999 9999999999987 4455 578999999999888 9999
Q ss_pred HHHHHHHHHhccCC---CCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 645 LAEKVAEHVFELEP---DNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 645 ~a~~~~~~~~~l~p---~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
+|+..++++++++| +++..|..++.+|...|++++|.+.+++..+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999 9999999999999999999999999988765
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.16 E-value=7.4e-10 Score=117.08 Aligned_cols=270 Identities=11% Similarity=-0.001 Sum_probs=157.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCc-----chHHHHHHHhhccCcchhhhhHHHHHHhh----cC-CCchhhHH
Q 047408 338 SMIAGYAREGVFDGAIRLFRGMVREGIEPDV-----YAITSILHACACDGLLEIGKDVHDYIKEN----DM-QSSLYVSN 407 (830)
Q Consensus 338 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----g~-~~~~~~~~ 407 (830)
.....+...|++++|+..|+++.+. .|+. ..+..+...+...|+++.|.+.+..+++. +. .....++.
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 87 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 87 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence 3444555666666666666666554 2332 33444445555566666666655554432 11 12245677
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHh
Q 047408 408 ALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRH 487 (830)
Q Consensus 408 ~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 487 (830)
.+...|...|++++|...|++.... +.+ .++..
T Consensus 88 ~l~~~~~~~g~~~~A~~~~~~al~~--------------~~~-----~~~~~---------------------------- 120 (338)
T 3ro2_A 88 NLGNTLKVLGNFDEAIVCCQRHLDI--------------SRE-----LNDKV---------------------------- 120 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--------------HHH-----TTCHH----------------------------
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH--------------HHH-----hcCch----------------------------
Confidence 7888888889999888887664211 100 00000
Q ss_pred CCCCchhHHhHHHHHHHhcCC--------------------HHHHHHHhhhCC-------CC--ChhhHHHHHHHHHhcC
Q 047408 488 GISADRNVANAIVDMYVKCGV--------------------LVLARSLFDMIP-------AK--DLISWTIMIAGYGMHG 538 (830)
Q Consensus 488 g~~~~~~~~~~Li~~y~k~g~--------------------~~~A~~~f~~m~-------~~--d~~~~~~li~~~~~~g 538 (830)
....++..+...|...|+ +++|.+.|++.. .+ ....|..+...|...|
T Consensus 121 ---~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 197 (338)
T 3ro2_A 121 ---GEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLG 197 (338)
T ss_dssp ---HHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhC
Confidence 001233334444444444 444444444321 00 1235666667777777
Q ss_pred ChHHHHHHHHHHHHcCC-CCC----hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhcC
Q 047408 539 FGCDAIATFNDMRQAGI-EPD----EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK----LEHYACMVDLLSRTG 609 (830)
Q Consensus 539 ~~~~A~~l~~~m~~~g~-~Pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lv~~l~r~g 609 (830)
++++|++.|++..+... .++ ..++..+...+...|++++|..+++.......-.++ ...+..+...|.+.|
T Consensus 198 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 277 (338)
T 3ro2_A 198 NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ 277 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhc
Confidence 77777777777654210 011 115666667777888888888888776532211111 456777888888999
Q ss_pred CHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 047408 610 NLSEAYRFIEMM----PVAPD----ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPD 659 (830)
Q Consensus 610 ~~~eA~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 659 (830)
++++|.+.+++. +..++ ..+|..+...+...|++++|...+++++++.++
T Consensus 278 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 278 DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 999998888775 11112 357778888899999999999999999988765
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.15 E-value=6.5e-10 Score=121.98 Aligned_cols=270 Identities=11% Similarity=-0.000 Sum_probs=164.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCCc-----chHHHHHHHhhccCcchhhhhHHHHHHhh----c-CCCchhhHH
Q 047408 338 SMIAGYAREGVFDGAIRLFRGMVREGIEPDV-----YAITSILHACACDGLLEIGKDVHDYIKEN----D-MQSSLYVSN 407 (830)
Q Consensus 338 ~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----g-~~~~~~~~~ 407 (830)
.+...+...|++++|+..|++..+. .|+. ..+..+...+...|+++.|...+..+++. + ......++.
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 3445556666666666666666554 2332 23444445555566666666665555443 1 122345677
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHh
Q 047408 408 ALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRH 487 (830)
Q Consensus 408 ~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 487 (830)
.+...|...|++++|...|++.. +++.+. + +
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al--------------~~~~~~---~--~------------------------------ 161 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHL--------------TLARQL---G--D------------------------------ 161 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH--------------HHHHHH---T--C------------------------------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH--------------HHHHHh---h--c------------------------------
Confidence 88888899999999988887642 111111 0 0
Q ss_pred CCCCchhHHhHHHHHHHhcCC-----------------HHHHHHHhhhCC-------CC--ChhhHHHHHHHHHhcCChH
Q 047408 488 GISADRNVANAIVDMYVKCGV-----------------LVLARSLFDMIP-------AK--DLISWTIMIAGYGMHGFGC 541 (830)
Q Consensus 488 g~~~~~~~~~~Li~~y~k~g~-----------------~~~A~~~f~~m~-------~~--d~~~~~~li~~~~~~g~~~ 541 (830)
.+....++..+...|...|+ +++|.+.|++.. .+ ....|..+...|...|+++
T Consensus 162 -~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 240 (411)
T 4a1s_A 162 -RLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQ 240 (411)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred -hHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChH
Confidence 00112234444455555555 555555544321 11 1236666777777777877
Q ss_pred HHHHHHHHHHHcCC-CCC----hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC----CcchHHHHHHHHHhcCCHH
Q 047408 542 DAIATFNDMRQAGI-EPD----EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEP----KLEHYACMVDLLSRTGNLS 612 (830)
Q Consensus 542 ~A~~l~~~m~~~g~-~Pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~y~~lv~~l~r~g~~~ 612 (830)
+|++.|++..+... .++ ..++..+...+...|++++|.++|+.......-.. ....+..+..+|.+.|+++
T Consensus 241 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 320 (411)
T 4a1s_A 241 AAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFN 320 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 77777777765210 011 11566677778888888888888877653221111 1456778888899999999
Q ss_pred HHHHHHHhC-C---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 047408 613 EAYRFIEMM-P---VAPD----ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPD 659 (830)
Q Consensus 613 eA~~~~~~m-~---~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 659 (830)
+|.+.+++. . -.++ ..++..+...+...|++++|...+++++++.+.
T Consensus 321 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 321 TAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 999888876 1 1112 357788888899999999999999999887664
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.15 E-value=2.3e-08 Score=115.21 Aligned_cols=405 Identities=10% Similarity=0.034 Sum_probs=230.4
Q ss_pred CCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCC---hHHHHHHHHHHHHhCC-CCCchHH
Q 047408 230 RDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGA---LMFGRAVHAFALKACF-SKEISFN 305 (830)
Q Consensus 230 ~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~---~~~~~~l~~~~~~~g~-~~~~~~~ 305 (830)
.|..+|..+|..+.+.+.++.+..+|+++... .+.....|...+..-.+.++ .+.++++++..+.... .|++.+|
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW 142 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLW 142 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 58889999999999999999999999999875 33344556666666667777 8888889888887652 4677777
Q ss_pred HHHHHHhhcCCCh--------HHHHHHHhhcC------CC-CeehHHHHHHHHH---------hcCChhHHHHHHHHHHH
Q 047408 306 NTLLDMYSKCGDL--------DGAIRVFEKMG------ER-SVVSWTSMIAGYA---------REGVFDGAIRLFRGMVR 361 (830)
Q Consensus 306 ~~Li~~y~k~g~~--------~~A~~~f~~m~------~~-d~~~~~~li~~~~---------~~g~~~~A~~l~~~m~~ 361 (830)
...+....+.++. +..+++|+... .+ +...|...|.-.. .+++.+.+..+|+..+.
T Consensus 143 ~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 143 LSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh
Confidence 7777665554443 33446776522 22 3356777775433 23345677788888774
Q ss_pred cCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhc-------CCC---
Q 047408 362 EGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQ-------MPV--- 431 (830)
Q Consensus 362 ~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~-------m~~--- 431 (830)
.....-..+|..... +.+.-+...++.++.... ..++.|...+.+ +..
T Consensus 223 iP~~~~~~~w~~Y~~-fe~~~~~~~a~~~~~e~~---------------------~~y~~Ar~~~~e~~~~~~~l~r~~p 280 (679)
T 4e6h_A 223 QPMDCLESMWQRYTQ-WEQDVNQLTARRHIGELS---------------------AQYMNARSLYQDWLNITKGLKRNLP 280 (679)
T ss_dssp SCCSSHHHHHHHHHH-HHHHHCTTTHHHHHHHHH---------------------HHHHHHHHHHHHHHHHTTTCCCCCC
T ss_pred CccHHHHHHHHHHHH-HHHhcCcchHHHHHHHhh---------------------HHHHHHHHHHHHHHHHHHhHhhccc
Confidence 211111122211111 111001111222111100 011112221111 000
Q ss_pred C-------------C------chhHHHHHH-----------------HHHHHHHHHhCCCCCccccccchhhhcchhhHH
Q 047408 432 K-------------D------IVSWNTMIG-----------------ALDLFVAMLQNFEPDGVTMACILPACASLAALE 475 (830)
Q Consensus 432 ~-------------~------~~~~n~~i~-----------------al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~ 475 (830)
+ + +..|...|. ...+|++......-+...+.....-+...|+.+
T Consensus 281 ~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~ 360 (679)
T 4e6h_A 281 ITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDS 360 (679)
T ss_dssp SSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCT
T ss_pred cccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHH
Confidence 0 0 011211111 112333333332223333333333344556666
Q ss_pred HHH-HHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCC-------------CC------------hhhHHH
Q 047408 476 RGR-EIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPA-------------KD------------LISWTI 529 (830)
Q Consensus 476 ~a~-~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-------------~d------------~~~~~~ 529 (830)
.|. +++..++.. ++.+...+-..+..+-+.|+++.|+++|+++.. |+ ...|-.
T Consensus 361 ~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~ 439 (679)
T 4e6h_A 361 TVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCV 439 (679)
T ss_dssp THHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHH
Confidence 775 788777763 345666677777888888888888888876542 21 225777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHc-cCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHh
Q 047408 530 MIAGYGMHGFGCDAIATFNDMRQA-GIEPDEVSFISVLYACSH-SGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSR 607 (830)
Q Consensus 530 li~~~~~~g~~~~A~~l~~~m~~~-g~~Pd~~t~~~ll~a~~~-~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r 607 (830)
.+....+.|..+.|..+|.+.++. +. +....|......-.+ .++.+.|..+|+...+.++- +...+...++.+..
T Consensus 440 y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~--~~~~w~~y~~fe~~ 516 (679)
T 4e6h_A 440 YMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKYFAT--DGEYINKYLDFLIY 516 (679)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC--chHHHHHHHHHHHh
Confidence 777777778888888888888764 11 112223222211222 34478888888877765322 33445677777777
Q ss_pred cCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 047408 608 TGNLSEAYRFIEMM-PVAP----DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNT 661 (830)
Q Consensus 608 ~g~~~eA~~~~~~m-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~ 661 (830)
.|+.+.|..+|++. ...| ....|...+.--..+|+.+.+..+.+++.+..|+++
T Consensus 517 ~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 517 VNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 88888888888875 2223 236788887777888888888888888888888764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.2e-09 Score=114.79 Aligned_cols=185 Identities=12% Similarity=0.048 Sum_probs=152.2
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCC--C-Chh-hHHHHHHHHHhcCChHHHHHHHHH
Q 047408 474 LERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPA--K-DLI-SWTIMIAGYGMHGFGCDAIATFND 549 (830)
Q Consensus 474 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d~~-~~~~li~~~~~~g~~~~A~~l~~~ 549 (830)
.++|..++..+++.-.+.+...+..++..+.+.|++++|.++|++... | +.. .|..++..+.+.|+.++|.++|++
T Consensus 80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 159 (308)
T 2ond_A 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 489999999999842345677999999999999999999999998652 3 344 899999999999999999999999
Q ss_pred HHHcCCCCCh-hHHHHHHHHHH-ccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC----C
Q 047408 550 MRQAGIEPDE-VSFISVLYACS-HSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM----P 622 (830)
Q Consensus 550 m~~~g~~Pd~-~t~~~ll~a~~-~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~ 622 (830)
..+. .|+. ..|........ ..|++++|..+|+...+. .| +...|..+++.+.+.|+.++|..+|++. +
T Consensus 160 a~~~--~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~ 234 (308)
T 2ond_A 160 ARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHhc--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC
Confidence 9984 3443 34444333322 379999999999998754 34 4678899999999999999999999987 2
Q ss_pred CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcch
Q 047408 623 VAP--DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGY 663 (830)
Q Consensus 623 ~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 663 (830)
+.| ....|..++.....+|+.+.|..+++++++..|+++..
T Consensus 235 l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~~~ 277 (308)
T 2ond_A 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEG 277 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccccc
Confidence 455 36799999999999999999999999999999987643
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-09 Score=108.79 Aligned_cols=205 Identities=13% Similarity=0.042 Sum_probs=160.0
Q ss_pred CCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHH
Q 047408 456 PDGVTMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIA 532 (830)
Q Consensus 456 pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~ 532 (830)
.|...+......+...|++++|...+..+++..-+++...+..+...|.+.|++++|.+.|++.. ..+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 34556666777888999999999999999998754677777779999999999999999999764 335678999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChh--------HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC---cchHHHH
Q 047408 533 GYGMHGFGCDAIATFNDMRQAGIEPDEV--------SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK---LEHYACM 601 (830)
Q Consensus 533 ~~~~~g~~~~A~~l~~~m~~~g~~Pd~~--------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~y~~l 601 (830)
.|...|++++|++.|++..+ ..|+.. .+..+...+...|++++|.+.|+... .+.|+ ...|..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHH
Confidence 99999999999999999998 456643 46667778889999999999999987 45675 4677778
Q ss_pred HHHHHhcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHh
Q 047408 602 VDLLSRTGNL--SEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYA 672 (830)
Q Consensus 602 v~~l~r~g~~--~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 672 (830)
..+|...|+. ++|..+. ..+...+..+. ....+++++|...++++++++|+++.....|..+..
T Consensus 160 ~~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 8888766654 3332221 22344444333 345567999999999999999999988888877654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.13 E-value=3.4e-10 Score=118.65 Aligned_cols=231 Identities=15% Similarity=0.101 Sum_probs=151.7
Q ss_pred cccccchhhhcchhhHHHHHHHHHHHHHh-------CCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCC-------C--
Q 047408 459 VTMACILPACASLAALERGREIHGYILRH-------GISADRNVANAIVDMYVKCGVLVLARSLFDMIPA-------K-- 522 (830)
Q Consensus 459 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-------g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-------~-- 522 (830)
.++..+...+...|++++|..++..+++. ..+....++..+...|...|++++|...|++... +
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34566667777888888888888887763 2333466777888888888888888888876531 1
Q ss_pred --ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhc----
Q 047408 523 --DLISWTIMIAGYGMHGFGCDAIATFNDMRQA------GIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYEC---- 589 (830)
Q Consensus 523 --d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---- 589 (830)
...+|..+...|...|++++|++.|+++.+. +-.|+.. .+..+...+...|++++|.++|+.+....
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 2457777888888888888888888888763 2233333 46667777888888888888888775431
Q ss_pred -CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhCC----------CCCCH-HHHH------HHHHHHHhcCCHHHHHHHH
Q 047408 590 -NIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMMP----------VAPDA-TIWG------SLLCGCRIHHEVKLAEKVA 650 (830)
Q Consensus 590 -~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m~----------~~p~~-~~~~------~ll~~~~~~g~~~~a~~~~ 650 (830)
+..| ....+..+..+|.+.|++++|.+.++++- ..|.. ..|. .+...+...+.++++...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 1122 24567778888888888888888887651 11211 1222 2222333444555556667
Q ss_pred HHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 651 EHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 651 ~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
+++.+..|..+..+..++.+|...|++++|.+.+++..+
T Consensus 268 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 268 KACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777777888888999999999999999999999887654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.2e-09 Score=104.49 Aligned_cols=158 Identities=12% Similarity=-0.011 Sum_probs=96.7
Q ss_pred HHhHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHc
Q 047408 495 VANAIVDMYVKCGVLVLARSLFDMIPA---KDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSH 571 (830)
Q Consensus 495 ~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~ 571 (830)
.+..+...|.+.|++++|...|+++.. .+...|..+...|...|++++|++.|+++.+. .|+
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~------------- 74 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APD------------- 74 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC-------------
Confidence 444455555556666666666655442 23444555555555555555555555555542 222
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047408 572 SGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PV-APDATIWGSLLCGCRIHHEVKLAEKV 649 (830)
Q Consensus 572 ~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~ 649 (830)
+...+..+...|.+.|++++|.+.++++ .. +.+..+|..+...+...|++++|...
T Consensus 75 ----------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 132 (186)
T 3as5_A 75 ----------------------NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDS 132 (186)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ----------------------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHH
Confidence 2334444555555555555555555554 11 23456677777777777888888888
Q ss_pred HHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 650 AEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 650 ~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
++++++..|+++..+..++.+|...|++++|.+.++...+
T Consensus 133 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 133 FKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888877887777788888888888888888887776654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.10 E-value=2.6e-09 Score=116.09 Aligned_cols=195 Identities=11% Similarity=0.070 Sum_probs=124.4
Q ss_pred hHHhHHHHHHHhcCCHHHHHHHhhhCC-----CCC-----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCh---
Q 047408 494 NVANAIVDMYVKCGVLVLARSLFDMIP-----AKD-----LISWTIMIAGYGMHGFGCDAIATFNDMRQAGI-EPDE--- 559 (830)
Q Consensus 494 ~~~~~Li~~y~k~g~~~~A~~~f~~m~-----~~d-----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~Pd~--- 559 (830)
.++..+...|...|++++|...|++.. .++ ..+++.+...|...|++++|++.|++..+... .++.
T Consensus 144 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 223 (383)
T 3ulq_A 144 EFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLM 223 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHH
Confidence 345556666666666666666665432 111 24666777777777777777777777664210 0111
Q ss_pred -hHHHHHHHHHHccCCHHHHHHHHHHhHhh---cCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-C---C--CCC-H
Q 047408 560 -VSFISVLYACSHSGLVDEGWRFFNMMRYE---CNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-P---V--APD-A 627 (830)
Q Consensus 560 -~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~---~--~p~-~ 627 (830)
.++..+...+...|++++|.++|+....- .+..| ....+..+...|.+.|++++|.+.+++. . . .|. .
T Consensus 224 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 303 (383)
T 3ulq_A 224 GRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYL 303 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 25666777777888888888888776531 12213 2456777788888888888888877765 1 1 122 2
Q ss_pred HHHHHHHHHHHhcCC---HHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 628 TIWGSLLCGCRIHHE---VKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 628 ~~~~~ll~~~~~~g~---~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
..+..+...+...|+ ++.|...+++. ...|.....+..|+.+|...|++++|.+.+++..+
T Consensus 304 ~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 304 SEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 234556666777777 66777776665 33444456777888889999999988888877653
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.07 E-value=5.3e-09 Score=99.86 Aligned_cols=169 Identities=12% Similarity=-0.013 Sum_probs=124.0
Q ss_pred ccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHh
Q 047408 460 TMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGM 536 (830)
Q Consensus 460 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~ 536 (830)
.+..+...+...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|+++. ..+...|..+...|..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 44556667788899999999998887653 4567889999999999999999999999764 4467788889999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHH
Q 047408 537 HGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYR 616 (830)
Q Consensus 537 ~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~ 616 (830)
.|++++|++.|+++.+.. +.+...+..+...+...|++++|.++++.+...
T Consensus 89 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---------------------------- 139 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL---------------------------- 139 (186)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------
T ss_pred hcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc----------------------------
Confidence 999999999999988742 223334555555555556666666555554421
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchH
Q 047408 617 FIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYY 664 (830)
Q Consensus 617 ~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~ 664 (830)
.+.+..+|..+...+...|+.++|...+++++++.|+++...
T Consensus 140 ------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 140 ------RPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVEL 181 (186)
T ss_dssp ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGGG
T ss_pred ------CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchhhH
Confidence 112356677777777778888888888888888777765443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.06 E-value=1.9e-07 Score=107.70 Aligned_cols=127 Identities=11% Similarity=0.055 Sum_probs=86.9
Q ss_pred hHHHHHHHHHhhcCCC-ChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCccchHHHHHHHHHhCCC---hHHHHHH
Q 047408 79 LEKAMEVLYSSEKSKI-DTKTYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMFVTCGD---LKEGRRV 154 (830)
Q Consensus 79 ~~~A~~~~~~m~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li~~y~~~g~---~~~A~~~ 154 (830)
..+.+..|++.+...| +..+|..+++.+.+.+.++.++.++++++..- |.....|...+..-.+.|+ ++.++.+
T Consensus 48 ~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f--P~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF--PLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 4455556666555555 44599999999988899999999999998863 4437788888998888888 9999999
Q ss_pred HhcCC--C---CCcchHHHHHHHHHhCCCh----hH----HHHHHHHHHH-cCC-CCCc-ccHHHHHHH
Q 047408 155 FNKID--N---GKVFIWNLLMHEYSKTGNF----KE----SLYLFKKMQS-LGI-AADS-YTFSCVLKC 207 (830)
Q Consensus 155 f~~m~--~---~~~~~~~~li~~~~~~g~~----~~----A~~l~~~m~~-~g~-~p~~-~t~~~ll~~ 207 (830)
|++.. . +++..|..-+.-..+.++. ++ ..++|+.... .|. .|+. ..|...+..
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f 194 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHF 194 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 99754 2 6777888877765555543 23 3467766443 465 5543 345444443
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.06 E-value=4e-10 Score=118.05 Aligned_cols=251 Identities=13% Similarity=0.092 Sum_probs=153.5
Q ss_pred eehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHH
Q 047408 333 VVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDM 412 (830)
Q Consensus 333 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~ 412 (830)
..+|..+...|...|++++|+.+|+++.+. ..............++..+...
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~----------------------------~~~~~~~~~~~~~~~~~~la~~ 78 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALED----------------------------LEKTSGHDHPDVATMLNILALV 78 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------HHHHHCSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------------------------HHHHcCCCCHHHHHHHHHHHHH
Confidence 457888888888889999999888887642 0000000112235567888999
Q ss_pred HHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCc
Q 047408 413 YAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISAD 492 (830)
Q Consensus 413 y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~ 492 (830)
|...|++++|...|++.. +++.+... ...+..
T Consensus 79 ~~~~g~~~~A~~~~~~al--------------~~~~~~~~----------------------------------~~~~~~ 110 (311)
T 3nf1_A 79 YRDQNKYKDAANLLNDAL--------------AIREKTLG----------------------------------KDHPAV 110 (311)
T ss_dssp HHHTTCHHHHHHHHHHHH--------------HHHHHHHC----------------------------------TTCHHH
T ss_pred HHHCCCHHHHHHHHHHHH--------------HHHHHHhC----------------------------------CCChHH
Confidence 999999999999887542 11111110 001112
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHhhhCCC-------C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc------CC
Q 047408 493 RNVANAIVDMYVKCGVLVLARSLFDMIPA-------K----DLISWTIMIAGYGMHGFGCDAIATFNDMRQA------GI 555 (830)
Q Consensus 493 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-------~----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~ 555 (830)
..++..+...|...|++++|...|++... + ....|..+...|...|++++|++.|+++.+. +-
T Consensus 111 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 190 (311)
T 3nf1_A 111 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPD 190 (311)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 44556666777777777777777765431 1 2346777777888888888888888887763 22
Q ss_pred CCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhc------CCCCCc-c------hHHHHHHHHHhcCCHHHHHHHHHhC
Q 047408 556 EPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYEC------NIEPKL-E------HYACMVDLLSRTGNLSEAYRFIEMM 621 (830)
Q Consensus 556 ~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~~-~------~y~~lv~~l~r~g~~~eA~~~~~~m 621 (830)
.|+.. ++..+...+...|++++|.++|+.+.... ...|.. . .+..+...+...+.+.+|...++..
T Consensus 191 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 270 (311)
T 3nf1_A 191 DPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKAC 270 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC------
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhc
Confidence 34333 56677778888888888888888776421 122221 1 2222333445556666666666666
Q ss_pred C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 047408 622 P-VAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPD 659 (830)
Q Consensus 622 ~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 659 (830)
. ..| +..+|..+...+...|++++|...+++++++.|+
T Consensus 271 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 271 KVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred CCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 3 334 3578899999999999999999999999998775
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.98 E-value=2.7e-07 Score=99.56 Aligned_cols=163 Identities=13% Similarity=0.046 Sum_probs=91.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCC--C-C-hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHH---
Q 047408 527 WTIMIAGYGMHGFGCDAIATFNDMRQAGIE--P-D-EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYA--- 599 (830)
Q Consensus 527 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--P-d-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~--- 599 (830)
++.+...|...|++++|...+++....... | . ..++..+...+...|++++|..+++.......-......+.
T Consensus 138 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~ 217 (373)
T 1hz4_A 138 VRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNA 217 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHH
Confidence 334444555555566666555555442111 1 1 12344455556666666666666665543211111111111
Q ss_pred --HHHHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC------cchHH
Q 047408 600 --CMVDLLSRTGNLSEAYRFIEMM-PVAPD-----ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDN------TGYYV 665 (830)
Q Consensus 600 --~lv~~l~r~g~~~eA~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~------~~~~~ 665 (830)
..+..+.+.|++++|.+.+++. ...|. ...+..+...+...|+.++|...++++++..+.. ...+.
T Consensus 218 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~ 297 (373)
T 1hz4_A 218 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLL 297 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 2234466777777777777776 22221 2245566667777788888888887776553321 13567
Q ss_pred HHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 666 LLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 666 ~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
.++.+|...|+.++|.+.++....
T Consensus 298 ~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 298 LLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 778888888888888887776543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.7e-09 Score=126.16 Aligned_cols=164 Identities=12% Similarity=0.154 Sum_probs=144.7
Q ss_pred CchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHH
Q 047408 491 ADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVL 566 (830)
Q Consensus 491 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll 566 (830)
.+...++.|...|.+.|++++|.+.|++.. ..+...|+.+...|.+.|++++|++.|++.++ +.|+.. .+..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 357788999999999999999999999764 44678999999999999999999999999998 578765 788999
Q ss_pred HHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCH
Q 047408 567 YACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPD-ATIWGSLLCGCRIHHEV 643 (830)
Q Consensus 567 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~ 643 (830)
.++...|++++|++.|++.. .+.|+ ...|..+..+|.+.|++++|++.+++. .+.|+ ...|..|...+...|++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl---~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAI---QINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 99999999999999999987 45675 688999999999999999999999986 56674 68899999999999999
Q ss_pred HHHHHHHHHHhccCCC
Q 047408 644 KLAEKVAEHVFELEPD 659 (830)
Q Consensus 644 ~~a~~~~~~~~~l~p~ 659 (830)
++|+..+++++++.|+
T Consensus 162 ~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 162 TDYDERMKKLVSIVAD 177 (723)
T ss_dssp TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChh
Confidence 9999999999876554
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.95 E-value=6.6e-09 Score=112.89 Aligned_cols=166 Identities=11% Similarity=0.027 Sum_probs=128.1
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHhhhCC-----CCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCh
Q 047408 493 RNVANAIVDMYVKCGVLVLARSLFDMIP-----AKD----LISWTIMIAGYGMHGFGCDAIATFNDMRQA----GIEPDE 559 (830)
Q Consensus 493 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~-----~~d----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~Pd~ 559 (830)
..+++.+...|...|++++|...|++.. .++ ..+|+.+...|...|++++|++.|++..+. +..|+.
T Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 263 (383)
T 3ulq_A 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL 263 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH
Confidence 3467778888889999999888887653 122 247888899999999999999999998762 332444
Q ss_pred -hHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC---cchHHHHHHHHHhcCC---HHHHHHHHHhCCCCCCH-HHHH
Q 047408 560 -VSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK---LEHYACMVDLLSRTGN---LSEAYRFIEMMPVAPDA-TIWG 631 (830)
Q Consensus 560 -~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~y~~lv~~l~r~g~---~~eA~~~~~~m~~~p~~-~~~~ 631 (830)
.++..+...+...|++++|.++++....-..-.++ ...+..+..+|...|+ +++|++++++.+..|+. .++.
T Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~ 343 (383)
T 3ulq_A 264 PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAI 343 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 36888888999999999999999887542211112 2346778889999999 99999999999665553 5777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCC
Q 047408 632 SLLCGCRIHHEVKLAEKVAEHVFELEP 658 (830)
Q Consensus 632 ~ll~~~~~~g~~~~a~~~~~~~~~l~p 658 (830)
.|...+...|++++|...+++++++..
T Consensus 344 ~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 344 DVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 888889999999999999999987543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.93 E-value=3.6e-09 Score=108.82 Aligned_cols=199 Identities=15% Similarity=0.110 Sum_probs=140.5
Q ss_pred CchhHHhHHHHHHHhcCCHHHHHHHhhhCCC-------C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc------
Q 047408 491 ADRNVANAIVDMYVKCGVLVLARSLFDMIPA-------K----DLISWTIMIAGYGMHGFGCDAIATFNDMRQA------ 553 (830)
Q Consensus 491 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-------~----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------ 553 (830)
....++..+...|...|++++|...|++... + ...+|+.+...|...|++++|++.|++....
T Consensus 41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 120 (283)
T 3edt_B 41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG 120 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC
Confidence 3567888899999999999999999886541 1 3457888999999999999999999998864
Q ss_pred CCCCCh-hHHHHHHHHHHccCCHHHHHHHHHHhHhhc-----CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-----
Q 047408 554 GIEPDE-VSFISVLYACSHSGLVDEGWRFFNMMRYEC-----NIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM----- 621 (830)
Q Consensus 554 g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m----- 621 (830)
.-.|+. .++..+...+...|++++|.++|+.+.... +-.| ....+..+..+|.+.|++++|.+.+++.
T Consensus 121 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 200 (283)
T 3edt_B 121 KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAH 200 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 112433 367778888999999999999998876431 1123 2567888899999999999999998876
Q ss_pred -----CCCCC-HHHHHHHHHHHHhcCC------HHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 622 -----PVAPD-ATIWGSLLCGCRIHHE------VKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 622 -----~~~p~-~~~~~~ll~~~~~~g~------~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
...+. ...|..+.......+. +..+...++.+....|..+..+..|+.+|...|++++|.+.+++..+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 201 EKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 12232 2344444444433332 33444444444445566677899999999999999999999987754
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.93 E-value=4.7e-08 Score=99.77 Aligned_cols=201 Identities=14% Similarity=0.056 Sum_probs=117.0
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHhhhCCC--C-C---hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----hHH
Q 047408 493 RNVANAIVDMYVKCGVLVLARSLFDMIPA--K-D---LISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDE----VSF 562 (830)
Q Consensus 493 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~-d---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~----~t~ 562 (830)
...+-.+...|.+.|++++|...|+++.. | + ...|..+...|.+.|++++|+..|++..+. .|+. ..+
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~ 92 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI--YQIDPRVPQAE 92 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCCchhHHHH
Confidence 44444455555566666666666655431 1 2 334555555555666666666666665552 2321 123
Q ss_pred HHHHHHHHc--------cCCHHHHHHHHHHhHhhcCCCCCc-chHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 047408 563 ISVLYACSH--------SGLVDEGWRFFNMMRYECNIEPKL-EHYACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSL 633 (830)
Q Consensus 563 ~~ll~a~~~--------~g~~~~a~~~~~~m~~~~~~~p~~-~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~l 633 (830)
..+..++.. .|++++|...|+.....+ |+. .....+..+....+.+ ...+..+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~---------------~~~~~~l 154 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKL---------------ARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHH---------------HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHH---------------HHHHHHH
Confidence 333444444 555555555555554332 221 1111111100000000 0113566
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCCc---chHHHHHHHHhhh----------cCHHHHHHHHHHHHhCCCcCCCceeE
Q 047408 634 LCGCRIHHEVKLAEKVAEHVFELEPDNT---GYYVLLANVYAEA----------EKWEEVKKLREKISRRGLKKNPGCSW 700 (830)
Q Consensus 634 l~~~~~~g~~~~a~~~~~~~~~l~p~~~---~~~~~l~~~y~~~----------g~~~~A~~~~~~m~~~g~~~~~~~sw 700 (830)
...+...|+++.|+..++++++..|+++ ..+..++.+|... |++++|.+.++...+. .|
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~----~p---- 226 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI----FP---- 226 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH----CT----
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH----CC----
Confidence 7788999999999999999999999854 4788999999977 9999999999887652 12
Q ss_pred EEECCEEEEEEeCCcCCCChhHHHHHHHHHHHHHHH
Q 047408 701 IEIKGKVNIFVAGGSSHPHAKKIESLLKRLRLEMKR 736 (830)
Q Consensus 701 i~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~~~~ 736 (830)
.+|...+....|.++..++++
T Consensus 227 ---------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 ---------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp ---------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred ---------------CChHHHHHHHHHHHHHHHHHH
Confidence 245556777777777776654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.4e-08 Score=108.26 Aligned_cols=221 Identities=10% Similarity=-0.000 Sum_probs=164.4
Q ss_pred hhcchhhHHHHHHHHHHHHHhCC-CC----chhHHhHHHHHHHhcCCHHHHHHHhhhCC-----CCC-----hhhHHHHH
Q 047408 467 ACASLAALERGREIHGYILRHGI-SA----DRNVANAIVDMYVKCGVLVLARSLFDMIP-----AKD-----LISWTIMI 531 (830)
Q Consensus 467 a~~~~~~~~~a~~i~~~~~~~g~-~~----~~~~~~~Li~~y~k~g~~~~A~~~f~~m~-----~~d-----~~~~~~li 531 (830)
.+...|++++|...+..+.+..- .+ ...++..+...|...|+++.|...+++.. .++ ..+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 34678999999999999876421 12 34577889999999999999988887643 112 35788899
Q ss_pred HHHHhcCChHHHHHHHHHHHHc----CCCCC-hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcC--CCC-CcchHHHHHH
Q 047408 532 AGYGMHGFGCDAIATFNDMRQA----GIEPD-EVSFISVLYACSHSGLVDEGWRFFNMMRYECN--IEP-KLEHYACMVD 603 (830)
Q Consensus 532 ~~~~~~g~~~~A~~l~~~m~~~----g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p-~~~~y~~lv~ 603 (830)
..|...|++++|++.|++..+. |-.+. ..++..+...+...|++++|.++|+....-.. ..| ....+..+..
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 9999999999999999998762 11111 23577788889999999999999998764111 122 2567888999
Q ss_pred HHHhcCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHhccCCCCcchHHHHHHHHhh
Q 047408 604 LLSRTGNLSEAYRFIEMM----PV--APD-ATIWGSLLCGCRIHHE---VKLAEKVAEHVFELEPDNTGYYVLLANVYAE 673 (830)
Q Consensus 604 ~l~r~g~~~eA~~~~~~m----~~--~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 673 (830)
.|.+.|++++|.+.+++. +. .|. ...+..+...+...++ +++|...+++. ...|+....+..|+.+|..
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHH
Confidence 999999999999999886 21 233 2445555566777778 77777777762 3334455678899999999
Q ss_pred hcCHHHHHHHHHHHH
Q 047408 674 AEKWEEVKKLREKIS 688 (830)
Q Consensus 674 ~g~~~~A~~~~~~m~ 688 (830)
.|++++|.+.+++..
T Consensus 349 ~g~~~~A~~~~~~al 363 (378)
T 3q15_A 349 SCHFEQAAAFYRKVL 363 (378)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999988764
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.7e-09 Score=100.26 Aligned_cols=139 Identities=10% Similarity=-0.037 Sum_probs=100.4
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCC
Q 047408 533 GYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGN 610 (830)
Q Consensus 533 ~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~ 610 (830)
.+...|+.++|++.|++... ..|+.. .+..+...+...|++++|++.|+... .+.|+ ...|..+..+|.+.|+
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al---~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYI---NVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHcCc
Confidence 34455666667766666554 234332 45556666777777777777777665 33453 5677778888888888
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH-HHHHHhccCCCCcchHHHHHHHHhhhcC
Q 047408 611 LSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEK-VAEHVFELEPDNTGYYVLLANVYAEAEK 676 (830)
Q Consensus 611 ~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~-~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 676 (830)
+++|++.+++. .+.| +..+|..+...+...|+.++|.. .++++++++|+++.+|.+.+.++...|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 88888888775 4556 46788888888999998876655 4699999999999999999999988875
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.86 E-value=2.4e-08 Score=117.03 Aligned_cols=167 Identities=11% Similarity=-0.051 Sum_probs=130.0
Q ss_pred HhcCCHHHHHHHhhhCC-----------CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHc
Q 047408 504 VKCGVLVLARSLFDMIP-----------AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSH 571 (830)
Q Consensus 504 ~k~g~~~~A~~~f~~m~-----------~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~ 571 (830)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|++.|++..+ ..|+.. .+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHHHH
Confidence 56778888887777654 33566788888888888888888888888887 456544 67777788888
Q ss_pred cCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 047408 572 SGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEK 648 (830)
Q Consensus 572 ~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 648 (830)
.|++++|.+.|+...+ +.|+ ...|..+..+|.+.|++++ ++.+++. ...| +...|..+..++...|++++|+.
T Consensus 480 ~g~~~~A~~~~~~al~---l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLD---TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHH---HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888763 4563 6778888888888999888 8888776 4455 46788888888899999999999
Q ss_pred HHHHHhccCCCCcchHHHHHHHHhhhcC
Q 047408 649 VAEHVFELEPDNTGYYVLLANVYAEAEK 676 (830)
Q Consensus 649 ~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 676 (830)
.++++++++|+++.++..++.+|...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999999999988888889998877555
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=2.6e-08 Score=103.73 Aligned_cols=199 Identities=10% Similarity=0.006 Sum_probs=143.5
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCC-----CC----hhhHHHHHHHHHhcCChHHH
Q 047408 473 ALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPA-----KD----LISWTIMIAGYGMHGFGCDA 543 (830)
Q Consensus 473 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~d----~~~~~~li~~~~~~g~~~~A 543 (830)
++++|...+..+ ...|...|++++|...|++... .+ ..+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 578887777665 3467888999999888876531 12 45889999999999999999
Q ss_pred HHHHHHHHHcCC---CCC--hhHHHHHHHHHHcc-CCHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhcCCHHH
Q 047408 544 IATFNDMRQAGI---EPD--EVSFISVLYACSHS-GLVDEGWRFFNMMRYECNIEPK----LEHYACMVDLLSRTGNLSE 613 (830)
Q Consensus 544 ~~l~~~m~~~g~---~Pd--~~t~~~ll~a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lv~~l~r~g~~~e 613 (830)
+..|++..+... .+. ..++..+...+... |++++|+.+|+....-+.-..+ ...|..+...|.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 999999876211 111 23678888889996 9999999999987643211111 3567889999999999999
Q ss_pred HHHHHHhC-CCCCC---H-----HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcch-----HHHHHHHHh--hhcCH
Q 047408 614 AYRFIEMM-PVAPD---A-----TIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGY-----YVLLANVYA--EAEKW 677 (830)
Q Consensus 614 A~~~~~~m-~~~p~---~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~-----~~~l~~~y~--~~g~~ 677 (830)
|++.+++. ...|+ . ..|..+...+...|+++.|+..++++++++|+.... +..|...|. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999986 22332 1 156777788899999999999999999999986553 334555554 56788
Q ss_pred HHHHHHHHH
Q 047408 678 EEVKKLREK 686 (830)
Q Consensus 678 ~~A~~~~~~ 686 (830)
++|.+.++.
T Consensus 257 ~~A~~~~~~ 265 (292)
T 1qqe_A 257 SEHCKEFDN 265 (292)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhcc
Confidence 888887643
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.84 E-value=2e-07 Score=100.93 Aligned_cols=231 Identities=10% Similarity=-0.012 Sum_probs=171.8
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCC----ccccccchhhhcchhhHHHHHHHHH
Q 047408 407 NALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPD----GVTMACILPACASLAALERGREIHG 482 (830)
Q Consensus 407 ~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd----~~t~~~ll~a~~~~~~~~~a~~i~~ 482 (830)
......|...|++++|...|++....-.. .+| ..++..+...+...|+.+.|...+.
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~-------------------~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPF-------------------VSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGG-------------------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhh-------------------CCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 34455677889999999998875432000 111 2345566677788899999999988
Q ss_pred HHHHhCC-----CC-chhHHhHHHHHHHhcCCHHHHHHHhhhCCC-----CC----hhhHHHHHHHHHhcCChHHHHHHH
Q 047408 483 YILRHGI-----SA-DRNVANAIVDMYVKCGVLVLARSLFDMIPA-----KD----LISWTIMIAGYGMHGFGCDAIATF 547 (830)
Q Consensus 483 ~~~~~g~-----~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~d----~~~~~~li~~~~~~g~~~~A~~l~ 547 (830)
.+++..- .+ ...+++.+...|...|++++|.+.|++... ++ ..+++.+...|...|++++|++.|
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8776321 11 245778899999999999999999986541 22 347888999999999999999999
Q ss_pred HHHHHc---CCCCC-hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC---cchHHHHHHHHHhcCC---HHHHHHH
Q 047408 548 NDMRQA---GIEPD-EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK---LEHYACMVDLLSRTGN---LSEAYRF 617 (830)
Q Consensus 548 ~~m~~~---g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~y~~lv~~l~r~g~---~~eA~~~ 617 (830)
++..+. ...|+ ..++..+...+.+.|++++|..+++.......-.++ ...+..+...|...|+ +++|++.
T Consensus 246 ~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~ 325 (378)
T 3q15_A 246 QKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY 325 (378)
T ss_dssp HHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 998861 01233 446788888999999999999999988754332222 3456677778888888 9999999
Q ss_pred HHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 047408 618 IEMMPVAPDA-TIWGSLLCGCRIHHEVKLAEKVAEHVFEL 656 (830)
Q Consensus 618 ~~~m~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~l 656 (830)
+++....|+. ..+..+...+...|++++|...+++++++
T Consensus 326 ~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 326 FEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9997655543 56677888899999999999999988754
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=7.1e-09 Score=95.97 Aligned_cols=136 Identities=13% Similarity=0.058 Sum_probs=111.0
Q ss_pred HHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 047408 567 YACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEV 643 (830)
Q Consensus 567 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~ 643 (830)
..+...|++++|+..+.... ...|+ ...+-.+..+|.+.|++++|++.|++. .+.| +..+|..+...+...|++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence 44556788999999998765 44553 456667899999999999999999987 5566 578999999999999999
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHH-HHHHHhCCCcCCCceeEEEECCEEEEEEeCCcCCCChhH
Q 047408 644 KLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKL-REKISRRGLKKNPGCSWIEIKGKVNIFVAGGSSHPHAKK 722 (830)
Q Consensus 644 ~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~-~~~m~~~g~~~~~~~swi~~~~~~~~f~~~~~~~p~~~~ 722 (830)
++|+..++++++++|+++..|..++.+|.+.|++++|.+. +++..+ .+|+..+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--------------------------l~P~~~~ 135 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK--------------------------LFPGSPA 135 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--------------------------HSTTCHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--------------------------hCcCCHH
Confidence 9999999999999999999999999999999999987765 355442 3566777
Q ss_pred HHHHHHHHH
Q 047408 723 IESLLKRLR 731 (830)
Q Consensus 723 i~~~l~~l~ 731 (830)
++....+|.
T Consensus 136 ~~~l~~~ll 144 (150)
T 4ga2_A 136 VYKLKEQLL 144 (150)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 776665554
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.82 E-value=7.3e-08 Score=98.31 Aligned_cols=204 Identities=12% Similarity=0.013 Sum_probs=147.5
Q ss_pred CccccccchhhhcchhhHHHHHHHHHHHHHhCCCCc---hhHHhHHHHHHHhcCCHHHHHHHhhhCCC--C---C-hhhH
Q 047408 457 DGVTMACILPACASLAALERGREIHGYILRHGISAD---RNVANAIVDMYVKCGVLVLARSLFDMIPA--K---D-LISW 527 (830)
Q Consensus 457 d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~---d-~~~~ 527 (830)
+...+......+...|++++|...+..+++.. +.+ ...+..+...|.+.|++++|...|++... | + ...|
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 34455566677788999999999999998864 233 67788899999999999999999998752 2 1 3467
Q ss_pred HHHHHHHHh--------cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHH
Q 047408 528 TIMIAGYGM--------HGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYA 599 (830)
Q Consensus 528 ~~li~~~~~--------~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~ 599 (830)
..+...|.. .|++++|+..|++.++. .|+...... +.......... ....+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~-------------a~~~~~~~~~~-----~~~~~~ 152 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDD-------------ATQKIRELRAK-----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHH-------------HHHHHHHHHHH-----HHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHH-------------HHHHHHHHHHH-----HHHHHH
Confidence 778888888 99999999999999984 566542211 11111111111 012355
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhc----------CCHHHHHHHHHHHhccCCCCcc--
Q 047408 600 CMVDLLSRTGNLSEAYRFIEMM----PVAPD-ATIWGSLLCGCRIH----------HEVKLAEKVAEHVFELEPDNTG-- 662 (830)
Q Consensus 600 ~lv~~l~r~g~~~eA~~~~~~m----~~~p~-~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~l~p~~~~-- 662 (830)
.+...|.+.|++++|++.+++. |-.|. ...|..+..++... |++++|...++++++..|+++.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 6788899999999999998886 33332 35677777777655 8999999999999999999863
Q ss_pred -hHHHHHHHHhhhcCHHHHH
Q 047408 663 -YYVLLANVYAEAEKWEEVK 681 (830)
Q Consensus 663 -~~~~l~~~y~~~g~~~~A~ 681 (830)
.+..+..++...|+++++.
T Consensus 233 ~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 233 TAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp HHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHHhhhhh
Confidence 4566777777777666543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.80 E-value=5.9e-08 Score=99.56 Aligned_cols=230 Identities=10% Similarity=-0.001 Sum_probs=160.9
Q ss_pred HhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCC-CCCccccccchhhhcchhhHHHHHHHHHHHHHh-----
Q 047408 414 AKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNF-EPDGVTMACILPACASLAALERGREIHGYILRH----- 487 (830)
Q Consensus 414 ~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~-~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----- 487 (830)
...|++++|...|++ |++++.+..... +....++..+...+...|++++|...+..+++.
T Consensus 12 ~~~~~~~~A~~~~~~--------------al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 77 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQ--------------ALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTL 77 (283)
T ss_dssp -CCSCSSSHHHHHHH--------------HHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHH--------------HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHc
Confidence 455777777777765 455666555433 233456777788888999999999999988765
Q ss_pred -CC-CCchhHHhHHHHHHHhcCCHHHHHHHhhhCCC-------C----ChhhHHHHHHHHHhcCChHHHHHHHHHHHHc-
Q 047408 488 -GI-SADRNVANAIVDMYVKCGVLVLARSLFDMIPA-------K----DLISWTIMIAGYGMHGFGCDAIATFNDMRQA- 553 (830)
Q Consensus 488 -g~-~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-------~----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~- 553 (830)
+- +....++..+...|...|++++|...|++... + ...+|..+...|...|++++|++.|++..+.
T Consensus 78 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 157 (283)
T 3edt_B 78 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIY 157 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 22 23466888999999999999999999987641 1 2457888999999999999999999999874
Q ss_pred -----CCCCCh-hHHHHHHHHHHccCCHHHHHHHHHHhHhhc------CCCCC-cchHHHHHHHHHhcC------CHHHH
Q 047408 554 -----GIEPDE-VSFISVLYACSHSGLVDEGWRFFNMMRYEC------NIEPK-LEHYACMVDLLSRTG------NLSEA 614 (830)
Q Consensus 554 -----g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~-~~~y~~lv~~l~r~g------~~~eA 614 (830)
+-.|+. .++..+...+...|++++|.++|+...... ...+. ...+..+...+...+ .+.++
T Consensus 158 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (283)
T 3edt_B 158 ATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEY 237 (283)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 224433 367788899999999999999999876431 12333 334444444444333 35555
Q ss_pred HHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccC
Q 047408 615 YRFIEMMP-VAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFELE 657 (830)
Q Consensus 615 ~~~~~~m~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~ 657 (830)
...++... ..|+ ..+|..|...+...|++++|...+++++++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 238 GSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 55565553 2333 4678889999999999999999999998753
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.78 E-value=1.8e-07 Score=93.05 Aligned_cols=181 Identities=13% Similarity=0.004 Sum_probs=112.8
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHhhhCCC--CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh----HH
Q 047408 493 RNVANAIVDMYVKCGVLVLARSLFDMIPA--KD----LISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV----SF 562 (830)
Q Consensus 493 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~----t~ 562 (830)
...+..+...|.+.|++++|...|+++.. |+ ...|..+..+|.+.|++++|++.|++..+. .|+.. .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence 33445566677778888888888877642 22 235666777788888888888888887773 45443 22
Q ss_pred HHHHHHHHc------------------cCCHHHHHHHHHHhHhhcCCCCCcc-hHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 047408 563 ISVLYACSH------------------SGLVDEGWRFFNMMRYECNIEPKLE-HYACMVDLLSRTGNLSEAYRFIEMMPV 623 (830)
Q Consensus 563 ~~ll~a~~~------------------~g~~~~a~~~~~~m~~~~~~~p~~~-~y~~lv~~l~r~g~~~eA~~~~~~m~~ 623 (830)
..+..++.. .|+.++|...|+.+.+. .|+.. .+.+. .+.+.+.+..
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~----~~l~~~~~~~-------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDAT----KRLVFLKDRL-------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHH----HHHHHHHHHH--------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHH----HHHHHHHHHH--------
Confidence 223333322 34445555555544422 23211 11110 0000000000
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc---chHHHHHHHHhhhcCHHHHHHHHHHHHhCCCc
Q 047408 624 APDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNT---GYYVLLANVYAEAEKWEEVKKLREKISRRGLK 693 (830)
Q Consensus 624 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~---~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~ 693 (830)
......+...+...|+++.|...++++++..|+++ ..+..++.+|.+.|++++|.+.++.+...+.+
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 00112445567889999999999999999999986 56899999999999999999999988876543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=5.9e-08 Score=100.65 Aligned_cols=160 Identities=7% Similarity=-0.075 Sum_probs=118.4
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHH
Q 047408 523 DLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACM 601 (830)
Q Consensus 523 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~l 601 (830)
+...+..+...+.+.|++++|++.|++..+ ..|+.. .+..+...+...|+.++|...++.+. ...|+.......
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~---~~~p~~~~~~~~ 190 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIP---LQDQDTRYQGLV 190 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSC---GGGCSHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCc---hhhcchHHHHHH
Confidence 344555566667777777777777777776 456544 56666677778888888888877765 234543322222
Q ss_pred -HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC--cchHHHHHHHHhhhcC
Q 047408 602 -VDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDN--TGYYVLLANVYAEAEK 676 (830)
Q Consensus 602 -v~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~--~~~~~~l~~~y~~~g~ 676 (830)
.-.+.+.|+.++|.+.+++. ...| +...+..|...+...|++++|+..++++++.+|++ +..+..|+.+|...|+
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 22356677777788777775 3445 57889999999999999999999999999999998 7889999999999999
Q ss_pred HHHHHHHHHHH
Q 047408 677 WEEVKKLREKI 687 (830)
Q Consensus 677 ~~~A~~~~~~m 687 (830)
.++|...+++.
T Consensus 271 ~~~a~~~~r~a 281 (287)
T 3qou_A 271 GDALASXYRRQ 281 (287)
T ss_dssp TCHHHHHHHHH
T ss_pred CCcHHHHHHHH
Confidence 99988776543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.74 E-value=6.5e-08 Score=100.66 Aligned_cols=198 Identities=10% Similarity=-0.081 Sum_probs=146.7
Q ss_pred hhhcchhhHHHHHHHHHHHHHh----CCCCc-hhHHhHHHHHHHhcCCHHHHHHHhhhCCC-----CC----hhhHHHHH
Q 047408 466 PACASLAALERGREIHGYILRH----GISAD-RNVANAIVDMYVKCGVLVLARSLFDMIPA-----KD----LISWTIMI 531 (830)
Q Consensus 466 ~a~~~~~~~~~a~~i~~~~~~~----g~~~~-~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~d----~~~~~~li 531 (830)
..+...|++++|...+..+++. |-+++ ..+++.+..+|.+.|++++|...|++... .+ ..+|+.+.
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3456678899999988887664 32222 56888999999999999999999886541 12 35788999
Q ss_pred HHHHhc-CChHHHHHHHHHHHHcCCCCC-------hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcc-----hH
Q 047408 532 AGYGMH-GFGCDAIATFNDMRQAGIEPD-------EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLE-----HY 598 (830)
Q Consensus 532 ~~~~~~-g~~~~A~~l~~~m~~~g~~Pd-------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-----~y 598 (830)
..|... |++++|++.|++..+. .|+ ..++..+...+...|++++|+.+|+.......-.+... .|
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 202 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEW--YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 999996 9999999999998873 232 23578888999999999999999999874321112221 56
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH------HHHHHHHHHH--hcCCHHHHHHHHHHHhccCCCCcchHH
Q 047408 599 ACMVDLLSRTGNLSEAYRFIEMM-PVAPDAT------IWGSLLCGCR--IHHEVKLAEKVAEHVFELEPDNTGYYV 665 (830)
Q Consensus 599 ~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~------~~~~ll~~~~--~~g~~~~a~~~~~~~~~l~p~~~~~~~ 665 (830)
..++.++...|++++|.+.+++. .+.|+.. .+..|+.++. ..+++++|...++++.+++|.+.....
T Consensus 203 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~ 278 (292)
T 1qqe_A 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILN 278 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHH
Confidence 77888999999999999999997 5555422 3455666664 456799999999999999987644333
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.73 E-value=5.4e-07 Score=97.14 Aligned_cols=223 Identities=13% Similarity=0.009 Sum_probs=163.8
Q ss_pred hhcchhhHHHHHHHHHHHHHhCCCCch----hHHhHHHHHHHhcCCHHHHHHHhhhCC-----CCCh----hhHHHHHHH
Q 047408 467 ACASLAALERGREIHGYILRHGISADR----NVANAIVDMYVKCGVLVLARSLFDMIP-----AKDL----ISWTIMIAG 533 (830)
Q Consensus 467 a~~~~~~~~~a~~i~~~~~~~g~~~~~----~~~~~Li~~y~k~g~~~~A~~~f~~m~-----~~d~----~~~~~li~~ 533 (830)
.+...|+++.|...+...++..-..+. .+++.+...|...|++++|.+.+++.. ..+. .+++.+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 345678999999999998875422232 256777888999999999999998754 1222 245677888
Q ss_pred HHhcCChHHHHHHHHHHHHc----CCC--CCh-hHHHHHHHHHHccCCHHHHHHHHHHhHhhcCC-CC--CcchHHHHHH
Q 047408 534 YGMHGFGCDAIATFNDMRQA----GIE--PDE-VSFISVLYACSHSGLVDEGWRFFNMMRYECNI-EP--KLEHYACMVD 603 (830)
Q Consensus 534 ~~~~g~~~~A~~l~~~m~~~----g~~--Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-~p--~~~~y~~lv~ 603 (830)
+...|++++|++.|++.... +.. |.. ..+..+...+...|++++|..+++.......- .+ ....|..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 99999999999999998763 222 332 24566777889999999999999987643211 11 1345778889
Q ss_pred HHHhcCCHHHHHHHHHhC----CCCCCHHHHHH-----HHHHHHhcCCHHHHHHHHHHHhccCCCCcc----hHHHHHHH
Q 047408 604 LLSRTGNLSEAYRFIEMM----PVAPDATIWGS-----LLCGCRIHHEVKLAEKVAEHVFELEPDNTG----YYVLLANV 670 (830)
Q Consensus 604 ~l~r~g~~~eA~~~~~~m----~~~p~~~~~~~-----ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~----~~~~l~~~ 670 (830)
.+...|++++|.+.+++. +...+...|.. ++..+...|+.+.|...++++++..|.+.. .+..++.+
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 999999999999999875 21112123332 233477899999999999999988776422 45788999
Q ss_pred HhhhcCHHHHHHHHHHHHh
Q 047408 671 YAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 671 y~~~g~~~~A~~~~~~m~~ 689 (830)
|...|++++|.+.++...+
T Consensus 263 ~~~~g~~~~A~~~l~~a~~ 281 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNE 281 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 9999999999999887653
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.73 E-value=5.1e-08 Score=87.07 Aligned_cols=99 Identities=14% Similarity=0.188 Sum_probs=78.4
Q ss_pred CCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 047408 591 IEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLL 667 (830)
Q Consensus 591 ~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 667 (830)
+.|+ .+.+...+..|.+.|++++|++.|++. ...| +..+|..+..++...|++++|+..++++++++|+++..|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4454 455667778888888888888888775 4445 567888888888888888888888888888888888888888
Q ss_pred HHHHhhhcCHHHHHHHHHHHHh
Q 047408 668 ANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 668 ~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
+.+|...|++++|.+.+++..+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888888888888877654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.73 E-value=1.4e-07 Score=84.34 Aligned_cols=129 Identities=16% Similarity=0.206 Sum_probs=79.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHH
Q 047408 526 SWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLL 605 (830)
Q Consensus 526 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l 605 (830)
.|..+...|...|++++|+++|+++.+.+ +.+...+..+...+...|++++|..+|+.+... .
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~------------- 65 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---D------------- 65 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---C-------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---C-------------
Confidence 46666666777777777777777766532 122334444455555555555555555554321 1
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHH
Q 047408 606 SRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLRE 685 (830)
Q Consensus 606 ~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~ 685 (830)
+.+...|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|.+.++
T Consensus 66 ------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 66 ------------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp ------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred ------------------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 12345566666666666777777777777777777766677777777777777777777766
Q ss_pred HHHh
Q 047408 686 KISR 689 (830)
Q Consensus 686 ~m~~ 689 (830)
.+.+
T Consensus 128 ~~~~ 131 (136)
T 2fo7_A 128 KALE 131 (136)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 6654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.72 E-value=2.4e-07 Score=82.75 Aligned_cols=121 Identities=15% Similarity=0.180 Sum_probs=85.2
Q ss_pred HHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHc
Q 047408 495 VANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSH 571 (830)
Q Consensus 495 ~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~ 571 (830)
.+..+...|.+.|++++|..+|+++. ..+...|..+...+...|++++|++.|+++...+ +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 56788999999999999999999764 4567889999999999999999999999998853 2234456666677777
Q ss_pred cCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHH
Q 047408 572 SGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIE 619 (830)
Q Consensus 572 ~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~ 619 (830)
.|++++|.++++.+... .| +...+..++..|.+.|++++|.+.++
T Consensus 82 ~~~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALEL---DPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp TTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 77777777777776532 12 23333344444444444444444433
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.71 E-value=4.8e-08 Score=93.03 Aligned_cols=76 Identities=5% Similarity=-0.005 Sum_probs=61.6
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC--cchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 613 EAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDN--TGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 613 eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~--~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
+|.+.+++. ...| +...|..+...+...|++++|+..++++++.+|+. +..+..|+.+|...|+.++|...+++..
T Consensus 92 ~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 92 PELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 345555544 3355 47888889999999999999999999999999875 5588999999999999999998877653
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.65 E-value=7.1e-08 Score=89.01 Aligned_cols=100 Identities=12% Similarity=0.066 Sum_probs=89.0
Q ss_pred CCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHH
Q 047408 590 NIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVL 666 (830)
Q Consensus 590 ~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 666 (830)
.+.|+ ...+..+...|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 45564 566778888899999999999999887 4556 57899999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCHHHHHHHHHHHHh
Q 047408 667 LANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 667 l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
++.+|...|++++|.+.+++..+
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999988875
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.63 E-value=2.3e-06 Score=87.70 Aligned_cols=164 Identities=9% Similarity=0.049 Sum_probs=113.8
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHhhhCCC-----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-----ChhHH
Q 047408 493 RNVANAIVDMYVKCGVLVLARSLFDMIPA-----KDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEP-----DEVSF 562 (830)
Q Consensus 493 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-----d~~t~ 562 (830)
......+...|...|++++|.+++.+... .+...+-.++..|.+.|+.+.|.+.+++|.+ ..| +..+.
T Consensus 100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~~~d~~~~~d~~l 177 (310)
T 3mv2_B 100 PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--AIEDTVSGDNEMI 177 (310)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCccccccchHHH
Confidence 33444667777778888888888876522 2455677778888888888888888888877 467 35555
Q ss_pred HHHHHH--HHccC--CHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CC----------CC-C
Q 047408 563 ISVLYA--CSHSG--LVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PV----------AP-D 626 (830)
Q Consensus 563 ~~ll~a--~~~~g--~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~----------~p-~ 626 (830)
..+..+ ....| .+++|..+|+++..++ |+......+..++.+.|++++|++.++.+ .. .| |
T Consensus 178 ~~Laea~v~l~~g~~~~q~A~~~f~El~~~~---p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~ 254 (310)
T 3mv2_B 178 LNLAESYIKFATNKETATSNFYYYEELSQTF---PTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYK 254 (310)
T ss_dssp HHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS---CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhC---CCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCC
Confidence 566655 33334 8888988998887443 44223334444788889999999888764 11 25 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcch
Q 047408 627 ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGY 663 (830)
Q Consensus 627 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 663 (830)
+.+...++......|+ .|.++++++.+..|+++..
T Consensus 255 ~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 255 PTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 5566566666666676 8899999999999998744
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.63 E-value=8.7e-07 Score=90.78 Aligned_cols=173 Identities=7% Similarity=0.012 Sum_probs=131.4
Q ss_pred HHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHh
Q 047408 512 ARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRY 587 (830)
Q Consensus 512 A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~ 587 (830)
|...|++.. .++..++..+..+|...|++++|++++.+.+..|-.++.. .+...+..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 566666554 3456666788889999999999999999987654333444 566777889999999999999999974
Q ss_pred hcCCCC-----CcchHHHHHHH----HHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc-
Q 047408 588 ECNIEP-----KLEHYACMVDL----LSRTGNLSEAYRFIEMM-PVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFEL- 656 (830)
Q Consensus 588 ~~~~~p-----~~~~y~~lv~~----l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l- 656 (830)
..| +.....-|..+ ....++.++|..+|+++ ...|+...-..|+.++...|++++|+..++.+.+.
T Consensus 165 ---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 ---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp ---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred ---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 456 23444444444 33344999999999998 33455333344455788999999999999988876
Q ss_pred ---------CCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 657 ---------EPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 657 ---------~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
+|+++.++..++.++...|+ +|.++++++++
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 58899999888888888897 89999999986
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.63 E-value=3.1e-07 Score=107.50 Aligned_cols=191 Identities=13% Similarity=0.064 Sum_probs=152.5
Q ss_pred cchhhHHHHHHHHHHHH--------HhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhc
Q 047408 469 ASLAALERGREIHGYIL--------RHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMH 537 (830)
Q Consensus 469 ~~~~~~~~a~~i~~~~~--------~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~ 537 (830)
...|+.++|.+.+..++ +. .+.+...+..+...|.+.|++++|.+.|++.. ..+...|..+...|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67899999999999988 32 24567888899999999999999999999875 45778999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHH
Q 047408 538 GFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAY 615 (830)
Q Consensus 538 g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~ 615 (830)
|++++|++.|++..+ +.|+.. .+..+..++...|++++ .+.|+...+ +.|+ ...|..+..+|.+.|++++|+
T Consensus 481 g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999998 567654 67888899999999999 999998873 4564 678899999999999999999
Q ss_pred HHHHhC-CCCCC-HHHHHHHHHHHHhcCC-----HHHHHHHHHHHhccCCCCcchHHH
Q 047408 616 RFIEMM-PVAPD-ATIWGSLLCGCRIHHE-----VKLAEKVAEHVFELEPDNTGYYVL 666 (830)
Q Consensus 616 ~~~~~m-~~~p~-~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~l~p~~~~~~~~ 666 (830)
+.+++. ...|+ ...|..+..++...++ .+...++.+.+.++.++++..+..
T Consensus 555 ~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~~l 612 (681)
T 2pzi_A 555 RTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVLQI 612 (681)
T ss_dssp HHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHHHH
T ss_pred HHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 999998 57787 4678777777766555 344555555555666665554433
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=2.2e-07 Score=106.59 Aligned_cols=158 Identities=9% Similarity=0.009 Sum_probs=124.2
Q ss_pred cCCHHHHHHHhhhCCC---CChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHccCCHHHHHHH
Q 047408 506 CGVLVLARSLFDMIPA---KDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDE-VSFISVLYACSHSGLVDEGWRF 581 (830)
Q Consensus 506 ~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~ 581 (830)
.|++++|.+.|++..+ .+...|..+...|.+.|++++|++.|++..+ ..|+. ..+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999998763 3577899999999999999999999999998 56664 4788888999999999999999
Q ss_pred HHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHhc
Q 047408 582 FNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIH---HEVKLAEKVAEHVFE 655 (830)
Q Consensus 582 ~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~ 655 (830)
|+...+. .|+ ...+..+..+|.+.|++++|.+.+++. ...| +...|..+...+... |+.++|...++++++
T Consensus 80 ~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9998743 454 678889999999999999999999986 4445 568888999999999 999999999999999
Q ss_pred cCCCCcchHHHHH
Q 047408 656 LEPDNTGYYVLLA 668 (830)
Q Consensus 656 l~p~~~~~~~~l~ 668 (830)
.+|++...+..++
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999998888877
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.62 E-value=2.9e-07 Score=90.28 Aligned_cols=155 Identities=13% Similarity=0.051 Sum_probs=113.2
Q ss_pred HHHHHhcCCHHHHHHHhhhCCCC---ChhhHHH----------------HHHHHHhcCChHHHHHHHHHHHHcCCCCChh
Q 047408 500 VDMYVKCGVLVLARSLFDMIPAK---DLISWTI----------------MIAGYGMHGFGCDAIATFNDMRQAGIEPDEV 560 (830)
Q Consensus 500 i~~y~k~g~~~~A~~~f~~m~~~---d~~~~~~----------------li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~ 560 (830)
...+.+.|++++|...|++.... +...|.. +...|...|++++|+..|++.++ +.|+..
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~ 88 (208)
T 3urz_A 11 VSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ--KAPNNV 88 (208)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCH
Confidence 34455667777777777665422 2334544 88889999999999999999998 567654
Q ss_pred -HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCC--HHHHHHHHHhCCCCCCH--HHHHHHH
Q 047408 561 -SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGN--LSEAYRFIEMMPVAPDA--TIWGSLL 634 (830)
Q Consensus 561 -t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~--~~eA~~~~~~m~~~p~~--~~~~~ll 634 (830)
.+..+..++...|++++|...|+.... +.|+ ...+..+...|...|. .+++...++... .|+. ..|..+.
T Consensus 89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g 164 (208)
T 3urz_A 89 DCLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDG 164 (208)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHH
Confidence 678888889999999999999999873 4564 6788888888876654 445566666653 4443 3455556
Q ss_pred HHHHhcCCHHHHHHHHHHHhccCCCC
Q 047408 635 CGCRIHHEVKLAEKVAEHVFELEPDN 660 (830)
Q Consensus 635 ~~~~~~g~~~~a~~~~~~~~~l~p~~ 660 (830)
.++...|++++|+..+++++++.|++
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 66777899999999999999999974
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=7.1e-07 Score=102.37 Aligned_cols=144 Identities=11% Similarity=-0.054 Sum_probs=81.3
Q ss_pred hhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHH
Q 047408 472 AALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFN 548 (830)
Q Consensus 472 ~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~ 548 (830)
|++++|.+.+..+++.. +.+...+..+...|.+.|++++|.+.|++.. ..+...|..+...|...|++++|++.|+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 55666666666665543 3345666667777777777777777776543 2345566667777777777777777777
Q ss_pred HHHHcCCCCCh-hHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhc---CCHHHHHHHHHhC
Q 047408 549 DMRQAGIEPDE-VSFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRT---GNLSEAYRFIEMM 621 (830)
Q Consensus 549 ~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~---g~~~eA~~~~~~m 621 (830)
+..+. .|+. ..+..+..++...|++++|.+.|+...+. .| +...+..+..+|.+. |+.++|.+.+++.
T Consensus 82 ~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 77663 4443 35666666677777777777777766532 34 245566666677766 7777777766664
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=1.3e-07 Score=87.20 Aligned_cols=100 Identities=11% Similarity=0.037 Sum_probs=86.8
Q ss_pred CCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHH
Q 047408 590 NIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVL 666 (830)
Q Consensus 590 ~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 666 (830)
.+.|+ ...+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 44453 556677888899999999999999886 3445 67889999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCHHHHHHHHHHHHh
Q 047408 667 LANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 667 l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
++.+|...|++++|.+.++...+
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999887764
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.58 E-value=1.5e-07 Score=97.16 Aligned_cols=190 Identities=9% Similarity=-0.039 Sum_probs=136.9
Q ss_pred chhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHH
Q 047408 492 DRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLY 567 (830)
Q Consensus 492 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~ 567 (830)
+...+..+...|.+.|++++|...|++.. ..+...|..+...|...|++++|++.|++..+ +.|+.. .+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 45567778888999999999999998764 34778899999999999999999999999887 566654 6778888
Q ss_pred HHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047408 568 ACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLA 646 (830)
Q Consensus 568 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a 646 (830)
++...|++++|...|+..... .|+ ...+...+....+.++..+... .......++..+...+ ..+. .|+.+.|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l~-~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRLI-AAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHHH-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHHH-HHHHHHH
Confidence 899999999999999887642 232 1112222222222222222222 2223344455544444 3333 6899999
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHhhh-cCHHHHHHHHHHHHh
Q 047408 647 EKVAEHVFELEPDNTGYYVLLANVYAEA-EKWEEVKKLREKISR 689 (830)
Q Consensus 647 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~-g~~~~A~~~~~~m~~ 689 (830)
...++++++++|++......+..++.+. +++++|.++++.+.+
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999888888888888887 789999999987765
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.9e-06 Score=84.70 Aligned_cols=161 Identities=7% Similarity=-0.087 Sum_probs=115.1
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccC----CHHHHHHHHHHhHhhcCCCCCcchH
Q 047408 523 DLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSG----LVDEGWRFFNMMRYECNIEPKLEHY 598 (830)
Q Consensus 523 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g----~~~~a~~~~~~m~~~~~~~p~~~~y 598 (830)
++.++..+...|...|++++|++.|++..+.| +...+..+...+.. | +.++|.++|+..... + +...+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~-g---~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA-G---SKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT-T---CHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC-C---CHHHH
Confidence 55556666666666677777777777766644 34445555555555 5 677777777776432 2 34566
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCCCcchHHH
Q 047408 599 ACMVDLLSR----TGNLSEAYRFIEMM-PVAPD---ATIWGSLLCGCRI----HHEVKLAEKVAEHVFELEPDNTGYYVL 666 (830)
Q Consensus 599 ~~lv~~l~r----~g~~~eA~~~~~~m-~~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~l~p~~~~~~~~ 666 (830)
..|..+|.. .+++++|.+++++. ...|+ +..+..|...+.. .+|.++|...++++.++ |.++..+..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~ 167 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYW 167 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 667777766 77888888888886 34443 6778888888877 78999999999999988 677788999
Q ss_pred HHHHHhhh-c-----CHHHHHHHHHHHHhCCC
Q 047408 667 LANVYAEA-E-----KWEEVKKLREKISRRGL 692 (830)
Q Consensus 667 l~~~y~~~-g-----~~~~A~~~~~~m~~~g~ 692 (830)
|+.+|... | ++++|.+.+++..+.|.
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 99999764 3 89999999988876553
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.7e-06 Score=90.60 Aligned_cols=186 Identities=10% Similarity=-0.017 Sum_probs=134.4
Q ss_pred HHhHHHHHHHhcCCHHHHHHHhhhCCC-----CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCC--hh
Q 047408 495 VANAIVDMYVKCGVLVLARSLFDMIPA-----KD----LISWTIMIAGYGMHGFGCDAIATFNDMRQAG---IEPD--EV 560 (830)
Q Consensus 495 ~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~d----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~Pd--~~ 560 (830)
.|+.....|...|++++|...|.+... .+ ..+|+.+...|...|++++|++.|++..+.- -.|. ..
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 445556778899999999998876531 12 3478889999999999999999999877521 1222 23
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC----CcchHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC----HH
Q 047408 561 SFISVLYACSHSGLVDEGWRFFNMMRYECNIEP----KLEHYACMVDLLSRTGNLSEAYRFIEMM----PVAPD----AT 628 (830)
Q Consensus 561 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~----~~ 628 (830)
++..+...+.. |++++|+.+|+....-+.-.. ....+..+..+|.+.|++++|++.+++. +-.++ ..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 196 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYK 196 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHH
Confidence 57777788888 999999999998764321111 1457788899999999999999999886 11122 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcch-----HHHHHHHHhhhcCHHHHHHH
Q 047408 629 IWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGY-----YVLLANVYAEAEKWEEVKKL 683 (830)
Q Consensus 629 ~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~-----~~~l~~~y~~~g~~~~A~~~ 683 (830)
.|..++..+...|+++.|...+++++ ++|+.... ...++..| ..|+.+++.++
T Consensus 197 ~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 197 KCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 66667777778899999999999999 99976543 33445545 56776665553
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.54 E-value=2.7e-07 Score=82.28 Aligned_cols=114 Identities=13% Similarity=0.056 Sum_probs=85.6
Q ss_pred CCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 047408 555 IEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIW 630 (830)
Q Consensus 555 ~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~ 630 (830)
+.|+.. .+......+.+.|++++|++.|+...+ +.| +...|..+..+|.+.|++++|++.+++. .+.| +...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK---RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 444443 455556667777777777777776653 334 3566777777888888888888877775 4445 46789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 047408 631 GSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVY 671 (830)
Q Consensus 631 ~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 671 (830)
..+..++...|++++|+..++++++++|+++.++..|++++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999998888777653
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.53 E-value=8.3e-07 Score=87.00 Aligned_cols=157 Identities=11% Similarity=0.057 Sum_probs=118.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHH----------------HHHHHHccCCHHHHHHHHHHhHhhc
Q 047408 527 WTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFIS----------------VLYACSHSGLVDEGWRFFNMMRYEC 589 (830)
Q Consensus 527 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~----------------ll~a~~~~g~~~~a~~~~~~m~~~~ 589 (830)
+-.....+...|++++|+..|++..+ ..|+.. .+.. +..++...|++++|...|+...+
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-- 82 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ-- 82 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence 33445677889999999999999998 567655 4555 77888999999999999998874
Q ss_pred CCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC--HHHHHHHHHHHhccCCCCcchH
Q 047408 590 NIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHE--VKLAEKVAEHVFELEPDNTGYY 664 (830)
Q Consensus 590 ~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~l~p~~~~~~ 664 (830)
+.| +...+..+..+|...|++++|++.+++. .+.| +..+|..+...+...|+ .+.+...++++....|.. ..+
T Consensus 83 -~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~a~ 160 (208)
T 3urz_A 83 -KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQ-YAR 160 (208)
T ss_dssp -HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHH-HHH
T ss_pred -HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchh-HHH
Confidence 456 4678889999999999999999999987 4556 46788888888765553 444555666665433332 245
Q ss_pred HHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 665 VLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 665 ~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
..++..+...|++++|...+++..+
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~ 185 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVIL 185 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5678888889999999999988764
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=1e-06 Score=91.17 Aligned_cols=130 Identities=11% Similarity=0.005 Sum_probs=109.6
Q ss_pred CCh-hHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 047408 557 PDE-VSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPDATIWGSL 633 (830)
Q Consensus 557 Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~l 633 (830)
|+. ..+..+...+...|++++|...|+.... ..|+ ...+..+..+|.+.|++++|.+.+++. ...|+...+...
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQ---LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 554 3567777888999999999999999874 4564 678889999999999999999999998 456776544433
Q ss_pred HH-HHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 634 LC-GCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 634 l~-~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
.. .+...++.+.|...++++++.+|+++..+..|+.+|...|++++|.+.++.+..
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~ 247 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLR 247 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 33 366778888899999999999999999999999999999999999999988765
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.49 E-value=1.7e-06 Score=84.78 Aligned_cols=119 Identities=13% Similarity=0.020 Sum_probs=77.4
Q ss_pred HHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 047408 566 LYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEV 643 (830)
Q Consensus 566 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~ 643 (830)
...+...|++++|.+.|+.. +.|+...|..+...|.+.|++++|++.+++. ...| +..+|..+...+...|++
T Consensus 13 g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 13 GVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccH
Confidence 33444555555555555443 2344455555666666666666666666554 2223 456677777777777777
Q ss_pred HHHHHHHHHHhccCCCCc----------------chHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 644 KLAEKVAEHVFELEPDNT----------------GYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 644 ~~a~~~~~~~~~l~p~~~----------------~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
++|...+++++++.|++. ..+..++.+|...|++++|.+.++...+
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 777777777777777666 6777888888888888888888777665
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.48 E-value=2.9e-06 Score=84.17 Aligned_cols=182 Identities=12% Similarity=-0.020 Sum_probs=130.2
Q ss_pred ccchhhhcchhhHHHHHHHHHHHHHhCCCC--chhHHhHHHHHHHhcCCHHHHHHHhhhCC--CCC-h---hhHHHHHHH
Q 047408 462 ACILPACASLAALERGREIHGYILRHGISA--DRNVANAIVDMYVKCGVLVLARSLFDMIP--AKD-L---ISWTIMIAG 533 (830)
Q Consensus 462 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~--~~~~~~~Li~~y~k~g~~~~A~~~f~~m~--~~d-~---~~~~~li~~ 533 (830)
......+...|++++|...+..+++..... ....+..+...|.+.|++++|...|++.. .|+ . ..|..+...
T Consensus 8 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~ 87 (225)
T 2yhc_A 8 YATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLT 87 (225)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHH
Confidence 334556778899999999999999864221 24577888999999999999999999875 232 2 145445555
Q ss_pred HHh------------------cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCc
Q 047408 534 YGM------------------HGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKL 595 (830)
Q Consensus 534 ~~~------------------~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 595 (830)
|.. .|+.++|+..|+++++ ..|+........ .+.+ .+...+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~---~~l~------~~~~~~~--------- 147 (225)
T 2yhc_A 88 NMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDAT---KRLV------FLKDRLA--------- 147 (225)
T ss_dssp HHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHH---HHHH------HHHHHHH---------
T ss_pred HHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHH---HHHH------HHHHHHH---------
Confidence 543 5789999999999998 568775322111 1110 0111111
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcch
Q 047408 596 EHYACMVDLLSRTGNLSEAYRFIEMM-PVAPD----ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGY 663 (830)
Q Consensus 596 ~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 663 (830)
...-.+...|.+.|++++|...++++ ...|+ ...|..+..++...|+.++|+..++++....|++..+
T Consensus 148 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 148 KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 12235678899999999999999886 33343 2578888999999999999999999999999987654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.46 E-value=2.4e-06 Score=88.62 Aligned_cols=164 Identities=8% Similarity=-0.087 Sum_probs=120.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-----hHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC----c
Q 047408 525 ISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDE-----VSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK----L 595 (830)
Q Consensus 525 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~ 595 (830)
..+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|..+|+.......-..+ .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34556677888899999999999888774322111 12333445567888999999999887632211112 3
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC------C
Q 047408 596 EHYACMVDLLSRTGNLSEAYRFIEMM----PVAPD-----ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPD------N 660 (830)
Q Consensus 596 ~~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~------~ 660 (830)
..|+.+...|...|++++|++.+++. ...|+ ..++..+...|...|++++|...+++++++.++ -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 47888999999999999999988775 11222 258888999999999999999999999876543 1
Q ss_pred cchHHHHHHHHhhhcCHHHH-HHHHHHHH
Q 047408 661 TGYYVLLANVYAEAEKWEEV-KKLREKIS 688 (830)
Q Consensus 661 ~~~~~~l~~~y~~~g~~~~A-~~~~~~m~ 688 (830)
+..|..++.+|.+.|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 45788999999999999999 77565543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.46 E-value=1e-05 Score=83.93 Aligned_cols=160 Identities=8% Similarity=-0.088 Sum_probs=120.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcC-CCCChh----HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC----cchHH
Q 047408 529 IMIAGYGMHGFGCDAIATFNDMRQAG-IEPDEV----SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK----LEHYA 599 (830)
Q Consensus 529 ~li~~~~~~g~~~~A~~l~~~m~~~g-~~Pd~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~ 599 (830)
..+..+...|++++|++++++..+.. ..|+.. .+..+...+...|++++|..+|+.......-.++ ...|+
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34677888999999999999988732 122321 2334556677778999999999988753222223 22688
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC-------C-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC------cchH
Q 047408 600 CMVDLLSRTGNLSEAYRFIEMMP-------V-APD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDN------TGYY 664 (830)
Q Consensus 600 ~lv~~l~r~g~~~eA~~~~~~m~-------~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~------~~~~ 664 (830)
.+...|.+.|++++|++.++++- . .|. ..+|..+...|...|++++|...+++++++.++. +..|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 89999999999999998888761 1 122 2478889999999999999999999999876543 5678
Q ss_pred HHHHHHHhhhcC-HHHHHHHHHHHH
Q 047408 665 VLLANVYAEAEK-WEEVKKLREKIS 688 (830)
Q Consensus 665 ~~l~~~y~~~g~-~~~A~~~~~~m~ 688 (830)
..++.+|.+.|+ +++|.+.+++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 999999999995 699998877664
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.46 E-value=9.1e-07 Score=84.05 Aligned_cols=155 Identities=8% Similarity=-0.074 Sum_probs=115.6
Q ss_pred HHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH--H
Q 047408 495 VANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYA--C 569 (830)
Q Consensus 495 ~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a--~ 569 (830)
....+...|.+.|++++|...|++.. ..+...|..+...|.+.|++++|+..|++.... .|+.. +..++.. +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~-~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNS-YKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChH-HHHHHHHHHH
Confidence 34456677888999999999999876 346678888999999999999999999998763 45332 2222221 1
Q ss_pred HccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCCHH
Q 047408 570 SHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPD---ATIWGSLLCGCRIHHEVK 644 (830)
Q Consensus 570 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~---~~~~~~ll~~~~~~g~~~ 644 (830)
...+...++...|+.... ..|+ ...+..+..+|.+.|++++|.+.++++ ...|+ ...|..|...+...|+.+
T Consensus 85 ~~~~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HhhcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence 222223346777877763 4564 678888999999999999999999886 45554 568889999999999999
Q ss_pred HHHHHHHHHhc
Q 047408 645 LAEKVAEHVFE 655 (830)
Q Consensus 645 ~a~~~~~~~~~ 655 (830)
+|...+++++.
T Consensus 162 ~A~~~y~~al~ 172 (176)
T 2r5s_A 162 AIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 99999987753
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.43 E-value=1.4e-06 Score=77.38 Aligned_cols=118 Identities=13% Similarity=0.092 Sum_probs=95.3
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhh
Q 047408 596 EHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAE 673 (830)
Q Consensus 596 ~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 673 (830)
..+..+...+.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45666777888899999999988876 3445 578899999999999999999999999999999999999999999999
Q ss_pred hcCHHHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCcCCCChhHHHHHHHHHHHH
Q 047408 674 AEKWEEVKKLREKISRRGLKKNPGCSWIEIKGKVNIFVAGGSSHPHAKKIESLLKRLRLE 733 (830)
Q Consensus 674 ~g~~~~A~~~~~~m~~~g~~~~~~~swi~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~ 733 (830)
.|++++|.+.+++..+.. |. ....|...++...|.++..+
T Consensus 85 ~~~~~~A~~~~~~al~~~----p~----------------~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 85 VKEYASALETLDAARTKD----AE----------------VNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp TTCHHHHHHHHHHHHHHH----HH----------------HHTTTTHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhC----cc----------------cCCchhHHHHHHHHHHHHHh
Confidence 999999999988776521 10 01347777777777766554
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.43 E-value=4.3e-06 Score=81.84 Aligned_cols=144 Identities=8% Similarity=-0.072 Sum_probs=98.3
Q ss_pred HhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHccCC
Q 047408 496 ANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDE-VSFISVLYACSHSGL 574 (830)
Q Consensus 496 ~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~ 574 (830)
+..+...|.+.|++++|...|++...++...|..+...|...|++++|++.|++..+. .|+. ..+..+..++...|+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHccc
Confidence 3445667777888888888888777777777888888888888888888888887763 3433 356666667777777
Q ss_pred HHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047408 575 VDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMPVAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHV 653 (830)
Q Consensus 575 ~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~ 653 (830)
+++|.+.|+.......-.+... +...| +...|+ ..+|..+...+...|++++|...++++
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~--------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLID--------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEE--------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccHHH--------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 7777777776653211111110 00000 023343 367888888899999999999999999
Q ss_pred hccCCCC
Q 047408 654 FELEPDN 660 (830)
Q Consensus 654 ~~l~p~~ 660 (830)
+++.|++
T Consensus 148 l~~~p~~ 154 (213)
T 1hh8_A 148 TSMKSEP 154 (213)
T ss_dssp HTTCCSG
T ss_pred HHcCccc
Confidence 9999986
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.3e-06 Score=88.31 Aligned_cols=180 Identities=8% Similarity=-0.072 Sum_probs=137.6
Q ss_pred hcCCHHHHHHHhhhCC---CCChhhHHHH-------HHHHHhcCChHHHHHHHHHHHHcCCCCChhH-------------
Q 047408 505 KCGVLVLARSLFDMIP---AKDLISWTIM-------IAGYGMHGFGCDAIATFNDMRQAGIEPDEVS------------- 561 (830)
Q Consensus 505 k~g~~~~A~~~f~~m~---~~d~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t------------- 561 (830)
..++.+.|.+.|.++. ......|+.+ ...+...++..+++..+++-.. +.|+...
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 5789999999999875 3355688888 4666666667777776666554 4554331
Q ss_pred ---------HHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH----H
Q 047408 562 ---------FISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMPVAPDA----T 628 (830)
Q Consensus 562 ---------~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~----~ 628 (830)
...+..++...|++++|.+.|+.+.. ..|+....-.+..++.+.|++++|++.|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 22355677889999999999988763 3464335566777899999999999999877444433 4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccC--CC-CcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 629 IWGSLLCGCRIHHEVKLAEKVAEHVFELE--PD-NTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 629 ~~~~ll~~~~~~g~~~~a~~~~~~~~~l~--p~-~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
++..|..++...|++++|+..++++.+.. |. .+.....++.++.+.|+.++|..+++++..
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 78888889999999999999999998543 55 455788999999999999999999999885
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.41 E-value=1.4e-06 Score=79.39 Aligned_cols=95 Identities=9% Similarity=-0.029 Sum_probs=82.6
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHh
Q 047408 595 LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYA 672 (830)
Q Consensus 595 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 672 (830)
...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 445566777888889999999888876 3445 67889999999999999999999999999999999999999999999
Q ss_pred hhcCHHHHHHHHHHHHh
Q 047408 673 EAEKWEEVKKLREKISR 689 (830)
Q Consensus 673 ~~g~~~~A~~~~~~m~~ 689 (830)
..|++++|.+.++...+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999999887764
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.39 E-value=1.7e-05 Score=88.53 Aligned_cols=371 Identities=9% Similarity=-0.020 Sum_probs=203.4
Q ss_pred ChhHHHHHHHHHHHhCCCCCccchHHHHHHHHHhCCChHHHHHHHhcCC--CCCcchHHHHHHHHHhCCC-hhHHHHHHH
Q 047408 111 SLEDGKKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNKID--NGKVFIWNLLMHEYSKTGN-FKESLYLFK 187 (830)
Q Consensus 111 ~~~~a~~~~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~-~~~A~~l~~ 187 (830)
++..|+.+++..+.. |-. |+.+.++.+|+... .|++..|..-+.-..+.+. .+....+|+
T Consensus 10 ~i~~aR~vyer~l~~----------------~P~-~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe 72 (493)
T 2uy1_A 10 ELSSPSAIMEHARRL----------------YMS-KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYE 72 (493)
T ss_dssp --CCHHHHHHHHHHH----------------HHT-TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHH
T ss_pred chHHHHHHHHHHHHH----------------CCC-CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 366677777766552 111 88999999998754 3677788887777666653 345666777
Q ss_pred HHHH-cCCCC-CcccHHHHHHHHHhcC-CCCCHHHHHHHHhhCCCCCcchHHHHHHHHHh---CCChhHHHHHHHHHHHC
Q 047408 188 KMQS-LGIAA-DSYTFSCVLKCLAVVG-NSRRVKDAHKLFDELSDRDVVSWNCMISGYIA---NGVAEKGLEVFKEMLNL 261 (830)
Q Consensus 188 ~m~~-~g~~p-~~~t~~~ll~~~~~~g-~~~~~~~A~~lf~~m~~~~~~~~n~li~~~~~---~g~~~~A~~l~~~m~~~ 261 (830)
.... -|..| +...|...+..+.... ..+.++.++++|++...--...+..+-..|.. ......+..+..+-.
T Consensus 73 ~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~-- 150 (493)
T 2uy1_A 73 FTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTL-- 150 (493)
T ss_dssp HHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHH--
T ss_pred HHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHh--
Confidence 6654 34333 3344444444332110 00135667777766532101111111111111 111111222211110
Q ss_pred CCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcC--CC-----hHHHHHHHhhcCC---C
Q 047408 262 GFNVDLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKC--GD-----LDGAIRVFEKMGE---R 331 (830)
Q Consensus 262 g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~--g~-----~~~A~~~f~~m~~---~ 331 (830)
..+..++.++..+.+.--..+...|...++.--.. |- .+.+..+|+++.. .
T Consensus 151 -------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~ 211 (493)
T 2uy1_A 151 -------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYY 211 (493)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT
T ss_pred -------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCC
Confidence 12223333333333211011233444444442221 11 2345567776543 2
Q ss_pred CeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhc---------C---
Q 047408 332 SVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKEND---------M--- 399 (830)
Q Consensus 332 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g---------~--- 399 (830)
+...|-..+.-+.+.|+.++|..+|++.... |+...+... ++.....+ ++++.+.+.- .
T Consensus 212 ~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~---y~~~~e~~---~~~~~l~~~~~~~~~~~~~~~~~ 282 (493)
T 2uy1_A 212 AEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLY---YGLVMDEE---AVYGDLKRKYSMGEAESAEKVFS 282 (493)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHH---HHHHTTCT---HHHHHHHHHTC----------CH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHH---HHhhcchh---HHHHHHHHHHHhhccchhhhhcc
Confidence 4567888888888899999999999999887 665543322 22211111 1233322210 0
Q ss_pred CCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchh-hHHHHH
Q 047408 400 QSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLA-ALERGR 478 (830)
Q Consensus 400 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~-~~~~a~ 478 (830)
.....+|...++.+.+.+.++.|+.+|+....++ .++...+ .....-...+ +.+.|+
T Consensus 283 ~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~-~~~~v~i---------------------~~A~lE~~~~~d~~~ar 340 (493)
T 2uy1_A 283 KELDLLRINHLNYVLKKRGLELFRKLFIELGNEG-VGPHVFI---------------------YCAFIEYYATGSRATPY 340 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSC-CCHHHHH---------------------HHHHHHHHHHCCSHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCC-CChHHHH---------------------HHHHHHHHHCCChHHHH
Confidence 1123567777777778888999999998872221 1111111 0000001123 588899
Q ss_pred HHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047408 479 EIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQ 552 (830)
Q Consensus 479 ~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 552 (830)
.+++..++.. +.++..+...++...+.|+.+.|+.+|+++. +....|...+.--..+|+.+.+.++++++..
T Consensus 341 ~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 341 NIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999988864 4445666778888899999999999999984 4577888888877888998888888888774
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.39 E-value=7.9e-06 Score=84.49 Aligned_cols=210 Identities=12% Similarity=0.140 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcC--CHHHHHHHhhhCC---CCChhhHHHHHHHH----Hhc---CChH
Q 047408 474 LERGREIHGYILRHGISADRNVANAIVDMYVKCG--VLVLARSLFDMIP---AKDLISWTIMIAGY----GMH---GFGC 541 (830)
Q Consensus 474 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g--~~~~A~~~f~~m~---~~d~~~~~~li~~~----~~~---g~~~ 541 (830)
-++|.+..+.++... +.+..+++.--..+...| +++++.+.++.+. .++...|+---..+ ... ++++
T Consensus 49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 357888888888865 456777888888888888 9999999999875 45677888755555 445 7899
Q ss_pred HHHHHHHHHHHcCCCCCh-hHHHHHHHHHHccCCHH--HHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCC------H
Q 047408 542 DAIATFNDMRQAGIEPDE-VSFISVLYACSHSGLVD--EGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGN------L 611 (830)
Q Consensus 542 ~A~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~--~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~------~ 611 (830)
+++++++++.+. .|.. ..+..-.....+.|.++ +++++++.+... .| +-..|+--..++.+.|+ +
T Consensus 128 ~EL~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~---d~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 128 REFDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT---DLKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccchhhhH
Confidence 999999999984 5544 46666666777888888 999999999843 34 34556655666777776 8
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC-HHHHHHHHHHHhccC---CCCcchHHHHHHHHhhhcCHHHHHHHHH
Q 047408 612 SEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHE-VKLAEKVAEHVFELE---PDNTGYYVLLANVYAEAEKWEEVKKLRE 685 (830)
Q Consensus 612 ~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~l~---p~~~~~~~~l~~~y~~~g~~~~A~~~~~ 685 (830)
++++++++++ ...| |...|+-+...+...|+ .+.....++++++++ |.++.++..|+.+|.+.|+.++|.++++
T Consensus 203 ~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 9999998876 4455 68999999988888887 444666888888876 8888899999999999999999999999
Q ss_pred HHHh
Q 047408 686 KISR 689 (830)
Q Consensus 686 ~m~~ 689 (830)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8874
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.38 E-value=1.3e-06 Score=92.74 Aligned_cols=143 Identities=14% Similarity=0.019 Sum_probs=106.2
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHH
Q 047408 523 DLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMV 602 (830)
Q Consensus 523 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 602 (830)
+...|..+...|.+.|++++|++.|++.++. .|+...+ ..+++.+.- .. ....|..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~~~-~~--------~~~~~~nla 203 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF-----------SNEEAQKAQ-AL--------RLASHLNLA 203 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC-----------CSHHHHHHH-HH--------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccC-----------ChHHHHHHH-HH--------HHHHHHHHH
Confidence 3456777777777777788887777777763 4443210 001111110 00 135677888
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHH
Q 047408 603 DLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEV 680 (830)
Q Consensus 603 ~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A 680 (830)
.+|.+.|++++|++.+++. .+.| +..+|..+..++...|++++|+..++++++++|+++.++..++.+|...|++++|
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999888876 4445 5788999999999999999999999999999999999999999999999999999
Q ss_pred H-HHHHHH
Q 047408 681 K-KLREKI 687 (830)
Q Consensus 681 ~-~~~~~m 687 (830)
. ++++.|
T Consensus 284 ~~~~~~~~ 291 (336)
T 1p5q_A 284 EKKLYANM 291 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 4 455554
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.36 E-value=7.2e-05 Score=83.42 Aligned_cols=199 Identities=10% Similarity=0.004 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047408 475 ERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP--AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQ 552 (830)
Q Consensus 475 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 552 (830)
+....+++.++... +.+..+|-..+..+.+.|+++.|+.+|++.. .++...|.. |+.....++. ++.+.+
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~~----y~~~~e~~~~---~~~l~~ 267 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSLY----YGLVMDEEAV---YGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHH----HHHHTTCTHH---HHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHHH----HHhhcchhHH---HHHHHH
Confidence 34556666666543 4456666666666777777777777776432 222223322 2221111111 222221
Q ss_pred c---------CC-CCC--hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcC-CHHHHHHHHH
Q 047408 553 A---------GI-EPD--EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTG-NLSEAYRFIE 619 (830)
Q Consensus 553 ~---------g~-~Pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g-~~~eA~~~~~ 619 (830)
. +. .+. ...|...+....+.+.++.|+.+|+.. ...+ ++...|...+.+-.+.| +.+.|.++|+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~~~~v~i~~A~lE~~~~~d~~~ar~ife 344 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEG--VGPHVFIYCAFIEYYATGSRATPYNIFS 344 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSC--CCHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCC--CChHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 1 00 111 123555555555666778888888776 2211 12233433333333334 5777777777
Q ss_pred hC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 620 MM--PVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 620 ~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
.. ...-++..|...+.-....|+.+.|+.+++++ +.....+....+.-...|+.+.+.++++.+.
T Consensus 345 ~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 345 SGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 65 12123445666666667777888888888776 2334556666666666788877777555544
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.1e-06 Score=92.08 Aligned_cols=197 Identities=9% Similarity=-0.057 Sum_probs=149.5
Q ss_pred chhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 047408 470 SLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFND 549 (830)
Q Consensus 470 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 549 (830)
..|++++|.+++....+..-. . .+...|++++|...|.+ ....|...|++++|++.|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 367888888888887764321 1 12225889999888765 46778899999999999999
Q ss_pred HHHc----CCCCC-hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCC--C--CcchHHHHHHHHHhcCCHHHHHHHHHh
Q 047408 550 MRQA----GIEPD-EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIE--P--KLEHYACMVDLLSRTGNLSEAYRFIEM 620 (830)
Q Consensus 550 m~~~----g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~--p--~~~~y~~lv~~l~r~g~~~eA~~~~~~ 620 (830)
..+. |-.+. ..+|..+...+...|++++|+.+|+....-+.-. | ...++..+..+|.+ |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 8763 11111 2368888889999999999999998875432111 1 14577888999988 999999999987
Q ss_pred C-CC---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc------chHHHHHHHHhhhcCHHHHHHHHHH
Q 047408 621 M-PV---APD----ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNT------GYYVLLANVYAEAEKWEEVKKLREK 686 (830)
Q Consensus 621 m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~------~~~~~l~~~y~~~g~~~~A~~~~~~ 686 (830)
. .+ ..+ ..++..+...+...|++++|...+++++++.|++. ..+..++.+|...|++++|.+.+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6 11 111 46788889999999999999999999999877654 2667788889999999999999887
Q ss_pred HH
Q 047408 687 IS 688 (830)
Q Consensus 687 m~ 688 (830)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 76
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.33 E-value=4.4e-06 Score=77.80 Aligned_cols=121 Identities=11% Similarity=-0.006 Sum_probs=82.4
Q ss_pred HHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 047408 565 VLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHH 641 (830)
Q Consensus 565 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g 641 (830)
+...+...|++++|...|+..... .| +...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|
T Consensus 19 ~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~ 95 (166)
T 1a17_A 19 QANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 95 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc
Confidence 333444444444444444444321 22 2445555666666666666666666654 2233 4677888888899999
Q ss_pred CHHHHHHHHHHHhccCCCCcchHHHH--HHHHhhhcCHHHHHHHHHHHH
Q 047408 642 EVKLAEKVAEHVFELEPDNTGYYVLL--ANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 642 ~~~~a~~~~~~~~~l~p~~~~~~~~l--~~~y~~~g~~~~A~~~~~~m~ 688 (830)
++++|...+++++++.|++...+..+ +..+...|++++|.+.++...
T Consensus 96 ~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 96 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 99999999999999999998877444 445888999999999877654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.32 E-value=1e-06 Score=89.09 Aligned_cols=194 Identities=10% Similarity=-0.090 Sum_probs=142.2
Q ss_pred chhhHHHHHHHHHHHHHhCCCCchhHHhHH-------HHHHHhcCCHHHHHHHhhhCCC--C-------C----------
Q 047408 470 SLAALERGREIHGYILRHGISADRNVANAI-------VDMYVKCGVLVLARSLFDMIPA--K-------D---------- 523 (830)
Q Consensus 470 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~L-------i~~y~k~g~~~~A~~~f~~m~~--~-------d---------- 523 (830)
..++...|.+.|..+.+.. +.....|+.+ ...+.+.++..++...+.+-.. | +
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4688999999999999876 4456667666 4555555555555555544332 1 1
Q ss_pred -----hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC--cc
Q 047408 524 -----LISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK--LE 596 (830)
Q Consensus 524 -----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~ 596 (830)
...+-.....+...|++++|.++|+.+... .|+.+....+...+.+.+++++|+..|+..... . .|. ..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~ 172 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGA 172 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHH
Confidence 012344677888999999999999999874 576665555566788999999999999855321 1 121 23
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 047408 597 HYACMVDLLSRTGNLSEAYRFIEMM---PVAPD--ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLAN 669 (830)
Q Consensus 597 ~y~~lv~~l~r~g~~~eA~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 669 (830)
.+..+..++.+.|++++|++.+++. +..|. ...+..+..+++..|+.++|...++++++.+|+ +.++..|.+
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 5777899999999999999999987 33254 347777888899999999999999999999998 766655543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.31 E-value=3.6e-06 Score=74.98 Aligned_cols=81 Identities=9% Similarity=-0.003 Sum_probs=58.5
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhh
Q 047408 596 EHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAE 673 (830)
Q Consensus 596 ~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 673 (830)
..+..+...|.+.|++++|++.+++. ...| +..+|..+...+...|++++|...++++++++|++...+..++.+|..
T Consensus 51 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 51 KLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 34444555555555555555555554 2223 467788888888888999999999999999999988888888888887
Q ss_pred hcC
Q 047408 674 AEK 676 (830)
Q Consensus 674 ~g~ 676 (830)
.|+
T Consensus 131 ~~~ 133 (133)
T 2lni_A 131 QYN 133 (133)
T ss_dssp HTC
T ss_pred hcC
Confidence 764
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.31 E-value=5.7e-06 Score=72.48 Aligned_cols=112 Identities=16% Similarity=0.180 Sum_probs=72.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHh
Q 047408 562 FISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVA-PDATIWGSLLCGCRI 639 (830)
Q Consensus 562 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~-p~~~~~~~ll~~~~~ 639 (830)
+..+...+...|++++|.++|+.+.... ..+...+..+...+.+.|++++|.+.++++ ... .+..+|..+...+..
T Consensus 12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 12 WYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 3333344444444444444444443221 112344555566666666666666666554 222 356778888888889
Q ss_pred cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhc
Q 047408 640 HHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAE 675 (830)
Q Consensus 640 ~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 675 (830)
.|+++.|...++++++..|+++..+..++.++...|
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 90 QGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999999999888888888887654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.31 E-value=1.4e-06 Score=80.28 Aligned_cols=103 Identities=14% Similarity=0.080 Sum_probs=67.3
Q ss_pred CCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 047408 556 EPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWG 631 (830)
Q Consensus 556 ~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~ 631 (830)
.|+.. .+..+...+.+.|++++|..+|+... .+.| +...|..+..+|.+.|++++|++.|++. .+.| ++..|.
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al---~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLC---IYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 44433 34444555556666666666666554 2334 2455666667777777777777777665 3444 356777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 047408 632 SLLCGCRIHHEVKLAEKVAEHVFELEPDNT 661 (830)
Q Consensus 632 ~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~ 661 (830)
.+..++...|++++|+..+++++++.|+++
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 888888888888888888888888888753
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.29 E-value=2.2e-05 Score=76.94 Aligned_cols=173 Identities=9% Similarity=-0.095 Sum_probs=137.2
Q ss_pred HHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC-CCChhhHHHHHHHHHhcC----ChHHHHHHHHHHH
Q 047408 477 GREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP-AKDLISWTIMIAGYGMHG----FGCDAIATFNDMR 551 (830)
Q Consensus 477 a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~-~~d~~~~~~li~~~~~~g----~~~~A~~l~~~m~ 551 (830)
|.+.+....+.| ++.....|..+|...|++++|.+.|++.. ..+...+..|...|.. | +.++|++.|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 455666666654 67788889999999999999999999865 4467788888888887 6 8999999999998
Q ss_pred HcCCCCChhHHHHHHHHHHc----cCCHHHHHHHHHHhHhhcCCCCC---cchHHHHHHHHHh----cCCHHHHHHHHHh
Q 047408 552 QAGIEPDEVSFISVLYACSH----SGLVDEGWRFFNMMRYECNIEPK---LEHYACMVDLLSR----TGNLSEAYRFIEM 620 (830)
Q Consensus 552 ~~g~~Pd~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~---~~~y~~lv~~l~r----~g~~~eA~~~~~~ 620 (830)
+.| +...+..|...+.. .+++++|.++|+... ...|. ...+..|..+|.. .+++++|.+.+++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~---~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAA---RDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHT---SSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH---HcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 755 45567777777776 889999999999886 33443 6788889999988 8899999999998
Q ss_pred C-CCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHhccCCC
Q 047408 621 M-PVAPDATIWGSLLCGCRIH------HEVKLAEKVAEHVFELEPD 659 (830)
Q Consensus 621 m-~~~p~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~l~p~ 659 (830)
. ...++...+..|...|... .|.++|...++++.+..+.
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 7 3334566777777776542 3899999999999887543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=2.9e-06 Score=74.92 Aligned_cols=94 Identities=18% Similarity=0.059 Sum_probs=84.4
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhh
Q 047408 596 EHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAE 673 (830)
Q Consensus 596 ~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 673 (830)
..+..+...+.+.|++++|++.+++. ...| +...|..+..++...|+.++|+..++++++++|+++..+..|+.+|..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45566778899999999999999887 4455 678899999999999999999999999999999999999999999999
Q ss_pred hcCHHHHHHHHHHHHh
Q 047408 674 AEKWEEVKKLREKISR 689 (830)
Q Consensus 674 ~g~~~~A~~~~~~m~~ 689 (830)
.|++++|.+.++...+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999988765
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.28 E-value=3.6e-06 Score=78.72 Aligned_cols=95 Identities=13% Similarity=0.086 Sum_probs=72.4
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHh
Q 047408 595 LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYA 672 (830)
Q Consensus 595 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 672 (830)
...+..+...|.+.|++++|++.|++. ...| +...|..+...+...|++++|+..++++++++|+++..|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 445666677777777777777777765 3344 56777778888888888888888888888888888888888888888
Q ss_pred hhcCHHHHHHHHHHHHh
Q 047408 673 EAEKWEEVKKLREKISR 689 (830)
Q Consensus 673 ~~g~~~~A~~~~~~m~~ 689 (830)
..|++++|.+.+++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 88888888888777654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=8.6e-06 Score=70.52 Aligned_cols=94 Identities=15% Similarity=0.152 Sum_probs=68.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhh
Q 047408 596 EHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAE 673 (830)
Q Consensus 596 ~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 673 (830)
..+..++..+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34555666677777777777777765 2233 566777777777777888888888888888888877778888888888
Q ss_pred hcCHHHHHHHHHHHHh
Q 047408 674 AEKWEEVKKLREKISR 689 (830)
Q Consensus 674 ~g~~~~A~~~~~~m~~ 689 (830)
.|++++|.+.++...+
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 8888888887776654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.26 E-value=3.6e-06 Score=79.78 Aligned_cols=115 Identities=10% Similarity=0.116 Sum_probs=75.8
Q ss_pred cCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCH--HH
Q 047408 572 SGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCG-CRIHHEV--KL 645 (830)
Q Consensus 572 ~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~-~~~~g~~--~~ 645 (830)
.|++++|...++..... .| +...+..+...|...|++++|.+.+++. ...| +...|..+... +...|++ ++
T Consensus 23 ~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp ----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred ccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 44555555555554422 23 3455566666666666666666666654 2223 45666667666 6677777 88
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 646 AEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 646 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
|+..++++++.+|+++..+..++.+|...|++++|.+.++...+
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888777664
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.4e-05 Score=77.34 Aligned_cols=155 Identities=15% Similarity=0.058 Sum_probs=77.8
Q ss_pred hcCCHHHHHH---HhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCh-hHHHHHHHHHHccCCHH
Q 047408 505 KCGVLVLARS---LFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQA----GIEPDE-VSFISVLYACSHSGLVD 576 (830)
Q Consensus 505 k~g~~~~A~~---~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~Pd~-~t~~~ll~a~~~~g~~~ 576 (830)
..|++++|.+ .+..-+......|+.+...|...|++++|++.|++.... |..|.. .++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3456666666 443333333445666666666666666666666665541 111111 12333334444444444
Q ss_pred HHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047408 577 EGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMPVAP--DATIWGSLLCGCRIHHEVKLAEKVAEHVF 654 (830)
Q Consensus 577 ~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 654 (830)
+|.++++...... +..+..| ...++..+...+...|++++|+..+++++
T Consensus 84 ~A~~~~~~al~~~-----------------------------~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 84 AARRCFLEERELL-----------------------------ASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHH-----------------------------HHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----------------------------HHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4444444332211 0011111 12345556666666677777777776666
Q ss_pred ccCCC--C----cchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 655 ELEPD--N----TGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 655 ~l~p~--~----~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
++.+. + ...+..++.+|...|++++|.+.+++..
T Consensus 135 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 135 VYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 54221 1 1235677788888888888877766554
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.25 E-value=6.7e-06 Score=73.16 Aligned_cols=95 Identities=17% Similarity=0.141 Sum_probs=85.8
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHh
Q 047408 595 LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYA 672 (830)
Q Consensus 595 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 672 (830)
...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|++++|+..+++++++.|+++..+..++.+|.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 566778888999999999999999886 5555 67889999999999999999999999999999999999999999999
Q ss_pred hhcCHHHHHHHHHHHHh
Q 047408 673 EAEKWEEVKKLREKISR 689 (830)
Q Consensus 673 ~~g~~~~A~~~~~~m~~ 689 (830)
..|++++|.+.+++..+
T Consensus 96 ~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 99999999999987764
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=5.8e-06 Score=73.10 Aligned_cols=113 Identities=15% Similarity=0.099 Sum_probs=78.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 047408 562 FISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCR 638 (830)
Q Consensus 562 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~ 638 (830)
+..+...+...|++++|..+|+..... .| +...+..+...+...|++++|.+.+++. ...| +..+|..+...+.
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIEL---NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 344444445555555555555554422 22 3445556666666667777776666654 2233 4677888888899
Q ss_pred hcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCH
Q 047408 639 IHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKW 677 (830)
Q Consensus 639 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~ 677 (830)
..|++++|...+++++++.|+++..+..++.++...|++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999888875
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.25 E-value=5.4e-06 Score=71.13 Aligned_cols=97 Identities=16% Similarity=0.098 Sum_probs=81.9
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC--CcchHHHHHHH
Q 047408 595 LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPD--NTGYYVLLANV 670 (830)
Q Consensus 595 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~--~~~~~~~l~~~ 670 (830)
...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|++++|...+++++++.|+ ++..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 556677788888888888888888776 3333 5678888888899999999999999999999999 99999999999
Q ss_pred Hhhh-cCHHHHHHHHHHHHhCC
Q 047408 671 YAEA-EKWEEVKKLREKISRRG 691 (830)
Q Consensus 671 y~~~-g~~~~A~~~~~~m~~~g 691 (830)
|... |++++|.+.++...+..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHhCCHHHHHHHHHHHhhcc
Confidence 9999 99999999988876543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=1.3e-06 Score=80.30 Aligned_cols=109 Identities=13% Similarity=0.063 Sum_probs=77.5
Q ss_pred CCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 047408 555 IEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIW 630 (830)
Q Consensus 555 ~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~ 630 (830)
+.|+.. .+..+...+...|++++|...|+.... +.| +...|..+..+|.+.|++++|++.+++. .+.| +...|
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 92 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV---LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFP 92 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH---cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 344443 345555666677777777777776653 334 3556667777777888888888777775 3344 45778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHH
Q 047408 631 GSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVL 666 (830)
Q Consensus 631 ~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 666 (830)
..+..++...|++++|+..+++++++.|+++.....
T Consensus 93 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 128 (148)
T 2vgx_A 93 FHAAECLLQXGELAEAESGLFLAQELIANXPEFXEL 128 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence 888888999999999999999999999988766443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.24 E-value=1.2e-05 Score=70.40 Aligned_cols=95 Identities=19% Similarity=0.306 Sum_probs=85.6
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHh
Q 047408 595 LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYA 672 (830)
Q Consensus 595 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 672 (830)
...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 456778899999999999999999987 2334 57889999999999999999999999999999999999999999999
Q ss_pred hhcCHHHHHHHHHHHHh
Q 047408 673 EAEKWEEVKKLREKISR 689 (830)
Q Consensus 673 ~~g~~~~A~~~~~~m~~ 689 (830)
..|++++|.+.++.+.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 99999999999988765
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.24 E-value=6.7e-06 Score=73.88 Aligned_cols=96 Identities=13% Similarity=0.024 Sum_probs=82.9
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 047408 594 KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVY 671 (830)
Q Consensus 594 ~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 671 (830)
+...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|+++.|...++++++++|+++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4567777888888888888888888875 3344 4788888999999999999999999999999999999999999999
Q ss_pred hhhcCHHHHHHHHHHHHh
Q 047408 672 AEAEKWEEVKKLREKISR 689 (830)
Q Consensus 672 ~~~g~~~~A~~~~~~m~~ 689 (830)
...|++++|.+.++...+
T Consensus 88 ~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 999999999999888765
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.3e-05 Score=72.78 Aligned_cols=95 Identities=9% Similarity=0.013 Sum_probs=71.3
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 047408 595 LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPD----ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLAN 669 (830)
Q Consensus 595 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 669 (830)
...+..+...+.+.|++++|.+.+++. ...|+ ..+|..+...+...|++++|+..+++++++.|+++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 455666677777777777777777765 45565 4667777777778888888888888888888888778888888
Q ss_pred HHhhhcCHHHHHHHHHHHHh
Q 047408 670 VYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 670 ~y~~~g~~~~A~~~~~~m~~ 689 (830)
+|...|++++|.+.+++..+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 88888888888887776654
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.22 E-value=5.3e-06 Score=77.38 Aligned_cols=84 Identities=17% Similarity=0.134 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCcCCCceeEEEECCE
Q 047408 627 ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIEIKGK 706 (830)
Q Consensus 627 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~~~swi~~~~~ 706 (830)
..+|..+..++...|+++.|+..++++++++|+++..|..++.+|...|++++|...++...+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~----------------- 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR----------------- 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh-----------------
Confidence 467888888999999999999999999999999999999999999999999999999887764
Q ss_pred EEEEEeCCcCCCChh-HHHHHHHHHHHHHHH
Q 047408 707 VNIFVAGGSSHPHAK-KIESLLKRLRLEMKR 736 (830)
Q Consensus 707 ~~~f~~~~~~~p~~~-~i~~~l~~l~~~~~~ 736 (830)
..|... .+...|..+...+++
T Consensus 126 ---------l~p~~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 126 ---------NHPAAASVVAREMKIVTERRAE 147 (162)
T ss_dssp ---------HCGGGHHHHHHHHHHHHHHHHH
T ss_pred ---------cCCCCHHHHHHHHHHHHHHHHH
Confidence 356665 677778877777665
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.21 E-value=2.4e-06 Score=95.30 Aligned_cols=115 Identities=10% Similarity=0.021 Sum_probs=83.9
Q ss_pred HHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 047408 569 CSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKL 645 (830)
Q Consensus 569 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~ 645 (830)
+...|++++|.++|+...+ +.|+ ...|..+..+|.+.|++++|++.+++. .+.| +..+|..+..++...|++++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3445555666665555542 2342 556666777777777777777777765 3445 46788999999999999999
Q ss_pred HHHHHHHHhccCCCCcchHHHHHHH--HhhhcCHHHHHHHHHH
Q 047408 646 AEKVAEHVFELEPDNTGYYVLLANV--YAEAEKWEEVKKLREK 686 (830)
Q Consensus 646 a~~~~~~~~~l~p~~~~~~~~l~~~--y~~~g~~~~A~~~~~~ 686 (830)
|+..++++++++|+++..+..++.+ +.+.|++++|.+.++.
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999888 8999999999998763
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=1.3e-06 Score=84.73 Aligned_cols=171 Identities=6% Similarity=-0.050 Sum_probs=107.9
Q ss_pred hHHHHHHHhcCCHHHHHHHhhhCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccC
Q 047408 497 NAIVDMYVKCGVLVLARSLFDMIPAK---DLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSG 573 (830)
Q Consensus 497 ~~Li~~y~k~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g 573 (830)
+..+......|.+++|.+.++..... ....|..+...+...|++++|++.|++..+ +.|+...+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~-------- 77 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD--FFIHTEEWDDQ-------- 77 (198)
T ss_dssp --------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCTTCCCH--------
T ss_pred cchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHhcccccchh--------
Confidence 44455566677778877777654322 345677778888888999999999888887 33333211100
Q ss_pred CHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047408 574 LVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAE 651 (830)
Q Consensus 574 ~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 651 (830)
..+.-. ..+ ....|..+..+|.+.|++++|++.+++. ...| +..+|..+..++...|+++.|+..++
T Consensus 78 ~~~~~~---~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 146 (198)
T 2fbn_A 78 ILLDKK---KNI--------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLY 146 (198)
T ss_dssp HHHHHH---HHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHH---HHH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 000000 000 1245667778888888888888888776 3344 56788889999999999999999999
Q ss_pred HHhccCCCCcchHHHHHHHHhhhcCHHHHH-HHHHHHH
Q 047408 652 HVFELEPDNTGYYVLLANVYAEAEKWEEVK-KLREKIS 688 (830)
Q Consensus 652 ~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~-~~~~~m~ 688 (830)
++++++|+++..+..++.++...|+.+++. ..++.|-
T Consensus 147 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 147 KAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999888877 4444443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.17 E-value=3e-06 Score=77.19 Aligned_cols=113 Identities=10% Similarity=-0.002 Sum_probs=78.4
Q ss_pred CCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 047408 556 EPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWG 631 (830)
Q Consensus 556 ~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~ 631 (830)
.|+.. .+..+...+...|++++|..+|+.... ..| +...|..+..+|.+.|++++|++.+++. ...| +...|.
T Consensus 14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 90 (142)
T 2xcb_A 14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCM---LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPF 90 (142)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHH
Confidence 34333 344455556666777777777766653 234 3556667777777788888888777775 3344 456778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 047408 632 SLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVY 671 (830)
Q Consensus 632 ~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 671 (830)
.+..++...|++++|...+++++++.|+++........+.
T Consensus 91 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 130 (142)
T 2xcb_A 91 HAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAG 130 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Confidence 8888899999999999999999999998887765554433
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=1.8e-05 Score=69.91 Aligned_cols=95 Identities=14% Similarity=0.091 Sum_probs=85.5
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHh
Q 047408 595 LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYA 672 (830)
Q Consensus 595 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 672 (830)
...+..+...+...|++++|.+.+++. ...| +..+|..+...+...|++++|...++++++..|+++..+..++.+|.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 456778888999999999999999986 3344 67889999999999999999999999999999999999999999999
Q ss_pred hhcCHHHHHHHHHHHHh
Q 047408 673 EAEKWEEVKKLREKISR 689 (830)
Q Consensus 673 ~~g~~~~A~~~~~~m~~ 689 (830)
..|++++|.+.++...+
T Consensus 92 ~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 99999999999988765
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.16 E-value=8.3e-05 Score=76.90 Aligned_cols=158 Identities=10% Similarity=-0.102 Sum_probs=119.8
Q ss_pred HHHHHHhcCCHHHHHHHhhhCCCC---Ch-----h-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CCh----hHHHH
Q 047408 499 IVDMYVKCGVLVLARSLFDMIPAK---DL-----I-SWTIMIAGYGMHGFGCDAIATFNDMRQAGIE-PDE----VSFIS 564 (830)
Q Consensus 499 Li~~y~k~g~~~~A~~~f~~m~~~---d~-----~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-Pd~----~t~~~ 564 (830)
.+..+.+.|++++|...+++.... +. . .+..+...|...|++++|++.|++....... +|. .+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 467788999999999999875432 11 1 3334666777788999999999999984333 232 15888
Q ss_pred HHHHHHccCCHHHHHHHHHHhHhhcC----CCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHH
Q 047408 565 VLYACSHSGLVDEGWRFFNMMRYECN----IEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-------PVAPD-ATIWG 631 (830)
Q Consensus 565 ll~a~~~~g~~~~a~~~~~~m~~~~~----~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-------~~~p~-~~~~~ 631 (830)
+..++...|++++|..+|+.+..... ..|. ...|..+...|.+.|++++|.+.+++. ...+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88999999999999999998874222 1121 347888999999999999999998875 12233 57888
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHhcc
Q 047408 632 SLLCGCRIHH-EVKLAEKVAEHVFEL 656 (830)
Q Consensus 632 ~ll~~~~~~g-~~~~a~~~~~~~~~l 656 (830)
.+...+...| +.++|...+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 8999999999 579999999988754
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.16 E-value=1.8e-06 Score=78.91 Aligned_cols=62 Identities=11% Similarity=-0.024 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcc-------CCCCcchH----HHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 628 TIWGSLLCGCRIHHEVKLAEKVAEHVFEL-------EPDNTGYY----VLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 628 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~l-------~p~~~~~~----~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
..|..+..++...|++++|+..+++++++ +|+++..| ..++.+|...|++++|...+++..+
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 38888888888889999999988888888 99998888 9999999999999999998887754
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.15 E-value=5.2e-06 Score=73.92 Aligned_cols=93 Identities=6% Similarity=0.038 Sum_probs=79.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcc-------hHHHH
Q 047408 597 HYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTG-------YYVLL 667 (830)
Q Consensus 597 ~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~-------~~~~l 667 (830)
.+..++..+.+.|++++|++.|++. .+.| +..+|..+..++...|++++|+..++++++++|++.. .|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4566788889999999999999886 4556 4788999999999999999999999999999988754 57778
Q ss_pred HHHHhhhcCHHHHHHHHHHHHh
Q 047408 668 ANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 668 ~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
+++|...|++++|.+.+++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 8999999999999999887653
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.10 E-value=8.7e-06 Score=77.08 Aligned_cols=127 Identities=10% Similarity=0.065 Sum_probs=95.9
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHH-HHhcCCH
Q 047408 535 GMHGFGCDAIATFNDMRQAGIEPD-EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDL-LSRTGNL 611 (830)
Q Consensus 535 ~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~-l~r~g~~ 611 (830)
...|++++|++.|++..+. .|+ ...+..+...+...|++++|..+|+..... .| +...+..+..+ +.+.|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQH 95 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTC
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCc
Confidence 4567788888888887774 444 456777778888888999998888887643 34 45667777888 7788998
Q ss_pred --HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHH
Q 047408 612 --SEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVL 666 (830)
Q Consensus 612 --~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 666 (830)
++|.+.+++. ...| +...|..+...+...|+++.|...+++++++.|+++.....
T Consensus 96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 154 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQL 154 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHH
T ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHH
Confidence 9999998886 3445 46788889999999999999999999999999998665433
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.9e-05 Score=69.93 Aligned_cols=91 Identities=13% Similarity=0.077 Sum_probs=70.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC---cchHHHHHHH
Q 047408 599 ACMVDLLSRTGNLSEAYRFIEMM-PVAPDA----TIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDN---TGYYVLLANV 670 (830)
Q Consensus 599 ~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~---~~~~~~l~~~ 670 (830)
-.+...+.+.|++++|.+.+++. ...|+. .+|..+...+...|++++|...++++++..|++ +..+..++.+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34556677788888888877765 222322 467777778888899999999999999888888 6678888999
Q ss_pred HhhhcCHHHHHHHHHHHHh
Q 047408 671 YAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 671 y~~~g~~~~A~~~~~~m~~ 689 (830)
|...|++++|.+.++...+
T Consensus 86 ~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 9999999999988887764
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.08 E-value=3.6e-05 Score=69.86 Aligned_cols=117 Identities=10% Similarity=-0.055 Sum_probs=75.9
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHH
Q 047408 523 DLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMV 602 (830)
Q Consensus 523 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv 602 (830)
+...|..+...+...|++++|++.|++..+ ..|+... ....+..+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~--------------------------------~~~~~~~~a 72 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQD--------------------------------QAVLHRNRA 72 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHH--------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchH--------------------------------HHHHHHHHH
Confidence 445666666666666667767666666665 3454200 023344455
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhh
Q 047408 603 DLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAE 673 (830)
Q Consensus 603 ~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 673 (830)
..|.+.|++++|++.+++. ...| +...|..+...+...|++++|...++++++++|++...+..+..+..+
T Consensus 73 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 73 ACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 5555556666665555543 2233 466777888888889999999999999999999988777766666543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00012 Score=75.64 Aligned_cols=228 Identities=7% Similarity=-0.018 Sum_probs=166.2
Q ss_pred HhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccc-cccchhhhcchh--hHHHHHHHHHHHHHhCCC
Q 047408 414 AKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVT-MACILPACASLA--ALERGREIHGYILRHGIS 490 (830)
Q Consensus 414 ~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t-~~~ll~a~~~~~--~~~~a~~i~~~~~~~g~~ 490 (830)
.+....++|+.+++.+...| |+..| ++.--..+..++ .++++.+....+++.. +
T Consensus 44 ~~~e~s~~aL~~t~~~L~~n----------------------P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-P 100 (306)
T 3dra_A 44 KAEEYSERALHITELGINEL----------------------ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-E 100 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHC----------------------TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-T
T ss_pred HcCCCCHHHHHHHHHHHHHC----------------------cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-c
Confidence 33344467888877765443 33322 222223334455 8999999999998865 4
Q ss_pred CchhHHhHHHHHH----Hhc---CCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCC
Q 047408 491 ADRNVANAIVDMY----VKC---GVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGC--DAIATFNDMRQAGIEPD 558 (830)
Q Consensus 491 ~~~~~~~~Li~~y----~k~---g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~Pd 558 (830)
.+..+++.-...+ .+. ++++++..+++.+. .+|..+|+--.-.+.+.|.++ ++++.+++|.+. .|.
T Consensus 101 k~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~ 178 (306)
T 3dra_A 101 KNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLK 178 (306)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTT
T ss_pred ccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCC
Confidence 5566666555445 555 78999999999875 567889988888888889888 999999999985 444
Q ss_pred h-hHHHHHHHHHHccCC------HHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHH-HHHHHHhC-CC----C
Q 047408 559 E-VSFISVLYACSHSGL------VDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSE-AYRFIEMM-PV----A 624 (830)
Q Consensus 559 ~-~t~~~ll~a~~~~g~------~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~e-A~~~~~~m-~~----~ 624 (830)
. ..+..-.....+.|. +++++++++.+.. ..| +...|+-+..++.+.|+..+ +.++.++. .. .
T Consensus 179 N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~---~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (306)
T 3dra_A 179 NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIV---KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQV 255 (306)
T ss_dssp CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEE
T ss_pred CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHH---hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCC
Confidence 3 456555555666665 8999999998874 456 46778888888999888554 55677775 22 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-cCCCCcchHHHHHH
Q 047408 625 PDATIWGSLLCGCRIHHEVKLAEKVAEHVFE-LEPDNTGYYVLLAN 669 (830)
Q Consensus 625 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-l~p~~~~~~~~l~~ 669 (830)
.++..|..|...+...|+.++|..+++++.+ .+|-...++...++
T Consensus 256 ~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 256 TSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 3678899999999999999999999999996 89998877765544
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.06 E-value=2.8e-05 Score=80.56 Aligned_cols=162 Identities=7% Similarity=-0.133 Sum_probs=114.9
Q ss_pred HHhHHHHHHHhcCCHHHHHHHhhhCC---CCCh------hhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC--hh
Q 047408 495 VANAIVDMYVKCGVLVLARSLFDMIP---AKDL------ISWTIMIAGYGMHGFGCDAIATFNDMRQAGI---EPD--EV 560 (830)
Q Consensus 495 ~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~Pd--~~ 560 (830)
.+...+..|...|++++|.+.++... .... ..+..+...|...|++++|++.|++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 34456677888899999988886432 1111 2234455667788899999999998875321 122 23
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-----cchHHHHHHHHHhcCCHHHHHHHHHhC-CC------CCC-H
Q 047408 561 SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-----LEHYACMVDLLSRTGNLSEAYRFIEMM-PV------APD-A 627 (830)
Q Consensus 561 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~------~p~-~ 627 (830)
+++.+...+...|++++|..+|+.........|+ ...|..+...|.+.|++++|++.+++. .+ ... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 6778888899999999999999887633222333 257788889999999999999988875 11 111 5
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHhcc
Q 047408 628 TIWGSLLCGCRIHHEVKLA-EKVAEHVFEL 656 (830)
Q Consensus 628 ~~~~~ll~~~~~~g~~~~a-~~~~~~~~~l 656 (830)
.+|..+...+...|+.++| ...+++++++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6788888889999999999 7778887643
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.06 E-value=4.9e-05 Score=73.28 Aligned_cols=151 Identities=14% Similarity=0.014 Sum_probs=98.1
Q ss_pred cchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCC------C---ChhhHHHHHHHHHhcCC
Q 047408 469 ASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPA------K---DLISWTIMIAGYGMHGF 539 (830)
Q Consensus 469 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~------~---d~~~~~~li~~~~~~g~ 539 (830)
...|++++|.++...+.. .......+++.+...|...|++++|...|++... . ....|+.+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 356888999885555433 2224677889999999999999999999987542 1 34578888999999999
Q ss_pred hHHHHHHHHHHHHcC-CCC-C----hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhcC
Q 047408 540 GCDAIATFNDMRQAG-IEP-D----EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK----LEHYACMVDLLSRTG 609 (830)
Q Consensus 540 ~~~A~~l~~~m~~~g-~~P-d----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lv~~l~r~g 609 (830)
+++|++.|++..+.- -.| + ...+..+...+...|++++|..+++.......-.++ ...+..+..++.+.|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 999999999987620 022 2 124566667777888888888888766432111111 122345555555566
Q ss_pred CHHHHHHHHHh
Q 047408 610 NLSEAYRFIEM 620 (830)
Q Consensus 610 ~~~eA~~~~~~ 620 (830)
++++|.+.+++
T Consensus 162 ~~~~A~~~~~~ 172 (203)
T 3gw4_A 162 NLLEAQQHWLR 172 (203)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 66665555544
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=3.1e-05 Score=66.91 Aligned_cols=105 Identities=13% Similarity=0.103 Sum_probs=65.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 047408 564 SVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIH 640 (830)
Q Consensus 564 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~ 640 (830)
.+...+...|++++|...|+..... .| +...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...
T Consensus 9 ~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 9 EKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 3333444444444444444444321 12 2344555555566666666666666554 2233 466788888888889
Q ss_pred CCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 047408 641 HEVKLAEKVAEHVFELEPDNTGYYVLLANVY 671 (830)
Q Consensus 641 g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 671 (830)
|++++|...++++++++|+++..+..++.+.
T Consensus 86 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 86 NRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999999999998887777666554
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.04 E-value=2.5e-05 Score=69.02 Aligned_cols=94 Identities=13% Similarity=0.157 Sum_probs=79.4
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC-------cchHHH
Q 047408 596 EHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDN-------TGYYVL 666 (830)
Q Consensus 596 ~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~-------~~~~~~ 666 (830)
..+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|++++|...+++++++.|++ +..+..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 45666777888888888888888876 2233 57788888888999999999999999999998876 778899
Q ss_pred HHHHHhhhcCHHHHHHHHHHHHh
Q 047408 667 LANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 667 l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
++.+|...|++++|.+.++...+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999999999999988775
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.01 E-value=2.2e-05 Score=83.17 Aligned_cols=93 Identities=10% Similarity=-0.018 Sum_probs=73.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC
Q 047408 597 HYACMVDLLSRTGNLSEAYRFIEMM-PVAPD----------------ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPD 659 (830)
Q Consensus 597 ~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 659 (830)
.+..+...|.+.|++++|++.|++. .+.|+ ..+|..+..++...|++++|+..++++++++|+
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 228 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 228 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3444455555555555555555443 12222 478999999999999999999999999999999
Q ss_pred CcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 660 NTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 660 ~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
++..|..++.+|...|++++|.+.+++..+
T Consensus 229 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 258 (336)
T 1p5q_A 229 NEKGLSRRGEAHLAVNDFELARADFQKVLQ 258 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999988775
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.00 E-value=5.4e-05 Score=73.11 Aligned_cols=114 Identities=13% Similarity=0.014 Sum_probs=87.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC
Q 047408 597 HYACMVDLLSRTGNLSEAYRFIEMM----PVAPD--------------ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEP 658 (830)
Q Consensus 597 ~y~~lv~~l~r~g~~~eA~~~~~~m----~~~p~--------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p 658 (830)
.+..+...+.+.|++++|++.+++. |..|+ ..+|..+..++...|++++|+..++++++++|
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 3445556666666666666666654 11221 36788888899999999999999999999999
Q ss_pred CCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCcCCCChhHHHHHHHHHHHHHHH
Q 047408 659 DNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIEIKGKVNIFVAGGSSHPHAKKIESLLKRLRLEMKR 736 (830)
Q Consensus 659 ~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~~~swi~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~~~~ 736 (830)
+++..+..++.+|...|++++|.+.++...+ .+|....++..+..+...+.+
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--------------------------~~p~~~~~~~~l~~~~~~~~~ 171 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAAS--------------------------LNPNNLDIRNSYELCVNKLKE 171 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--------------------------HSTTCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHH--------------------------HCCCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887764 246666777777776665543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.00 E-value=1.6e-05 Score=88.53 Aligned_cols=113 Identities=13% Similarity=0.005 Sum_probs=50.0
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCC-hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCH
Q 047408 534 YGMHGFGCDAIATFNDMRQAGIEPD-EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNL 611 (830)
Q Consensus 534 ~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~ 611 (830)
|.+.|++++|++.|++..+ ..|+ ...+..+..++.+.|++++|.+.++...+ +.|+ ...|..+..+|.+.|++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE---LDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCH
Confidence 3344555555555555544 2333 22444444555555555555555555442 2332 34445555555555555
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHH--HHhcCCHHHHHHHHH
Q 047408 612 SEAYRFIEMM-PVAPD-ATIWGSLLCG--CRIHHEVKLAEKVAE 651 (830)
Q Consensus 612 ~eA~~~~~~m-~~~p~-~~~~~~ll~~--~~~~g~~~~a~~~~~ 651 (830)
++|++.+++. ...|+ ...|..+..+ +...|++++|+..++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 5555555543 12221 2233333333 445555666666555
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.00 E-value=1.9e-05 Score=73.71 Aligned_cols=104 Identities=16% Similarity=0.055 Sum_probs=72.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 047408 562 FISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCR 638 (830)
Q Consensus 562 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~ 638 (830)
+..+...+...|++++|+++|+.... +.| +...|..+..+|.+.|++++|++.+++. .+.| +...|..+...+.
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALS---IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44444455555555555555555542 223 3455666677777777777777777665 3345 4778889999999
Q ss_pred hcCCHHHHHHHHHHHhccCCCCcchHHHHH
Q 047408 639 IHHEVKLAEKVAEHVFELEPDNTGYYVLLA 668 (830)
Q Consensus 639 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~ 668 (830)
..|++++|+..++++++++|+++..+...+
T Consensus 91 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999999999999999988665544
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.98 E-value=2.1e-05 Score=69.59 Aligned_cols=105 Identities=10% Similarity=-0.072 Sum_probs=65.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 047408 564 SVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIH 640 (830)
Q Consensus 564 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~ 640 (830)
.+...+...|++++|...|+.... +.| +...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++...
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 9 LEGKEYFTKSDWPNAVKAYTEMIK---RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 333444445555555555554442 123 2445556666666666666666666654 3344 466777888888888
Q ss_pred CCHHHHHHHHHHHhccC------CCCcchHHHHHHHH
Q 047408 641 HEVKLAEKVAEHVFELE------PDNTGYYVLLANVY 671 (830)
Q Consensus 641 g~~~~a~~~~~~~~~l~------p~~~~~~~~l~~~y 671 (830)
|++++|...++++++++ |++......+..+.
T Consensus 86 ~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 86 KEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 88888888888888888 77766666555443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.97 E-value=4.3e-05 Score=84.61 Aligned_cols=142 Identities=11% Similarity=0.016 Sum_probs=102.8
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 047408 524 LISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVD 603 (830)
Q Consensus 524 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~ 603 (830)
...|..+...|.+.|++++|+..|++.++ +.|+...+. -++..+ .... ....|..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~-----------~~~~~~-~~~~--------~~~~~~nla~ 325 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGLS-----------EKESKA-SESF--------LLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSCC-----------HHHHHH-HHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccCC-----------hHHHHH-HHHH--------HHHHHHHHHH
Confidence 45677778888888888888888888876 334332110 011111 1111 1356778888
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHH
Q 047408 604 LLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVK 681 (830)
Q Consensus 604 ~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~ 681 (830)
+|.+.|++++|++.+++. .+.| +...|..+..++...|++++|+..++++++++|++..++..++.++...|++++|.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999988886 4445 57889999999999999999999999999999999999999999999999999887
Q ss_pred HH-HHHH
Q 047408 682 KL-REKI 687 (830)
Q Consensus 682 ~~-~~~m 687 (830)
+- ++.|
T Consensus 406 ~~~~~~~ 412 (457)
T 1kt0_A 406 RRIYANM 412 (457)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 53 4444
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=97.97 E-value=6.7e-05 Score=69.52 Aligned_cols=125 Identities=13% Similarity=-0.025 Sum_probs=71.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHH
Q 047408 526 SWTIMIAGYGMHGFGCDAIATFNDMRQAGIEP-DEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVD 603 (830)
Q Consensus 526 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~ 603 (830)
.|..+...+...|++++|+..|++..+. .| +...+..+...+...|++++|.+.|+..... .| +...+..+..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~ 89 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHHH
Confidence 4455555566666666666666666552 33 2334555555666666666666666665532 23 3455666666
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHH--HHHHHHHhcCCHHHHHHHHHHHhc
Q 047408 604 LLSRTGNLSEAYRFIEMM-PVAP-DATIWG--SLLCGCRIHHEVKLAEKVAEHVFE 655 (830)
Q Consensus 604 ~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~ 655 (830)
+|.+.|++++|.+.+++. ...| +...|. .+...+...|++++|...+++..+
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 667777777777666665 2223 333442 233335566777777777766543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.94 E-value=6.8e-06 Score=71.86 Aligned_cols=83 Identities=23% Similarity=0.173 Sum_probs=64.7
Q ss_pred hcCCHHHHHHHHHhC-CC---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHH
Q 047408 607 RTGNLSEAYRFIEMM-PV---APD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVK 681 (830)
Q Consensus 607 r~g~~~eA~~~~~~m-~~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~ 681 (830)
..|++++|++.+++. .. .|+ ..+|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 457777788877776 34 243 4678888888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 047408 682 KLREKISR 689 (830)
Q Consensus 682 ~~~~~m~~ 689 (830)
+.+++..+
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.90 E-value=5.7e-05 Score=83.60 Aligned_cols=128 Identities=11% Similarity=0.068 Sum_probs=92.1
Q ss_pred HHccCCHHHHHHHHHHhHhhcC--CCCC----cchHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCH-HHHHH
Q 047408 569 CSHSGLVDEGWRFFNMMRYECN--IEPK----LEHYACMVDLLSRTGNLSEAYRFIEMM---------PVAPDA-TIWGS 632 (830)
Q Consensus 569 ~~~~g~~~~a~~~~~~m~~~~~--~~p~----~~~y~~lv~~l~r~g~~~eA~~~~~~m---------~~~p~~-~~~~~ 632 (830)
+...|++++|..+++....... +.|+ ..+++.|..+|...|++++|+.++++. +..|+. .+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3455666666666655433211 1221 345777777888888888888777764 345653 67899
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhc-----cCCCCcch---HHHHHHHHhhhcCHHHHHHHHHHHHhCCCcCCC
Q 047408 633 LLCGCRIHHEVKLAEKVAEHVFE-----LEPDNTGY---YVLLANVYAEAEKWEEVKKLREKISRRGLKKNP 696 (830)
Q Consensus 633 ll~~~~~~g~~~~a~~~~~~~~~-----l~p~~~~~---~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~ 696 (830)
|...|...|++++|+.+++++++ +.|+++.+ ...|...+..+|++++|+.+++.++++-.+..|
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~ 470 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQP 470 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998875 57887654 567888899999999999999999886544433
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00015 Score=75.63 Aligned_cols=211 Identities=15% Similarity=0.101 Sum_probs=151.7
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcC-CHHHHHHHhhhCC---CCChhhHHHHHHHHHhc-C-ChHHHHHH
Q 047408 473 ALERGREIHGYILRHGISADRNVANAIVDMYVKCG-VLVLARSLFDMIP---AKDLISWTIMIAGYGMH-G-FGCDAIAT 546 (830)
Q Consensus 473 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g-~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~-g-~~~~A~~l 546 (830)
..++|.++.+.++... +.+..+++.--..+...| .++++.+.++.+. .++..+|+--...+... + ++++++++
T Consensus 69 ~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 69 KSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 3457888888888866 456777888777788888 5999999999875 45778898877777776 7 89999999
Q ss_pred HHHHHHcCCCCCh-hHHHHHHHHHHccCCHH--------HHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCC------
Q 047408 547 FNDMRQAGIEPDE-VSFISVLYACSHSGLVD--------EGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGN------ 610 (830)
Q Consensus 547 ~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~--------~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~------ 610 (830)
++++.+ ..|.. ..+..-.....+.|..+ +++++++.+.+. .| +...|+-...++.+.|+
T Consensus 148 ~~k~L~--~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~---dp~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 148 IHGSLL--PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV---DGRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHTS--SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccccchH
Confidence 999997 45544 35555444455555555 899999988753 35 45667777777888776
Q ss_pred -HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHhccC------CCCc
Q 047408 611 -LSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEV--------------------KLAEKVAEHVFELE------PDNT 661 (830)
Q Consensus 611 -~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~--------------------~~a~~~~~~~~~l~------p~~~ 661 (830)
+++++++++++ ...| |...|+-+-+.+...|+. ......+..++... +.++
T Consensus 223 ~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 78999998876 4455 678999887777766653 22333333333322 4556
Q ss_pred chHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 662 GYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 662 ~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
.+...|+++|...|+.++|.++++.+.+
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 6778999999999999999999998864
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=97.88 E-value=4.4e-05 Score=78.48 Aligned_cols=110 Identities=6% Similarity=-0.186 Sum_probs=80.4
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 047408 559 EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLC 635 (830)
Q Consensus 559 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~ 635 (830)
...+..+...+...|++++|..+|+.... ..| +...|..+..+|.+.|++++|++.+++. ...| +...|..+..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAIT---RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34566677778888888888888887764 345 4667777888888888888888888775 5556 4567777878
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH
Q 047408 636 GCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVY 671 (830)
Q Consensus 636 ~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 671 (830)
++...|++++|+..++++++++|+++..+..+++..
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~ 116 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSA 116 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHH
Confidence 888888888888888888888887765544443333
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.86 E-value=6.3e-05 Score=67.31 Aligned_cols=96 Identities=7% Similarity=-0.141 Sum_probs=62.2
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 047408 561 SFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGC 637 (830)
Q Consensus 561 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~ 637 (830)
.+..+...+...|++++|..+|+..... .| +...|..+..+|.+.|++++|.+.+++. ...| +...|..+...+
T Consensus 11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 11 ELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 4444445555555555555555554422 23 2445566666666667777776666654 2334 467788888888
Q ss_pred HhcCCHHHHHHHHHHHhccCCC
Q 047408 638 RIHHEVKLAEKVAEHVFELEPD 659 (830)
Q Consensus 638 ~~~g~~~~a~~~~~~~~~l~p~ 659 (830)
...|+++.|+..+++++++.|+
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHChh
Confidence 8888999999999988888887
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.85 E-value=2.2e-05 Score=71.68 Aligned_cols=116 Identities=14% Similarity=-0.021 Sum_probs=75.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHH
Q 047408 526 SWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDL 604 (830)
Q Consensus 526 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~ 604 (830)
.|......+.+.|++++|++.|++.++ +.|+...- ++. ...| +...|..+..+
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~--------------~a~----------~~~~~~a~a~~n~g~a 66 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPE--------------EAF----------DHAGFDAFCHAGLAEA 66 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTT--------------SCC----------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcch--------------hhh----------hhccchHHHHHHHHHH
Confidence 455556666777777777777777776 44541100 000 0000 01145555555
Q ss_pred HHhcCCHHHHHHHHHhC--------CCCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 047408 605 LSRTGNLSEAYRFIEMM--------PVAPD-ATIW----GSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLL 667 (830)
Q Consensus 605 l~r~g~~~eA~~~~~~m--------~~~p~-~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 667 (830)
+.+.|++++|++.+++. .+.|| ...| .....++...|++++|+..++++++++|++.+.+.-+
T Consensus 67 l~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~ 142 (159)
T 2hr2_A 67 LAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK 142 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred HHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 55556655555555443 34886 4688 9999999999999999999999999999998876655
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.84 E-value=6e-05 Score=80.77 Aligned_cols=137 Identities=11% Similarity=0.011 Sum_probs=105.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHH
Q 047408 525 ISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVD 603 (830)
Q Consensus 525 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~ 603 (830)
..|..+...|.+.|++++|++.|++.++. .|+.. ..-..+++. .+.| +...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~~~----------~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDADGA----------KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHHHG----------GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHHHH----------HHHHHHHHHHHHHHH
Confidence 46778888888889999999988888762 11110 000111111 1222 2467888899
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHH
Q 047408 604 LLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVK 681 (830)
Q Consensus 604 ~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~ 681 (830)
+|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|++...+..++.++...|+.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999886 5666 46889999999999999999999999999999999999999999999999998886
Q ss_pred HH
Q 047408 682 KL 683 (830)
Q Consensus 682 ~~ 683 (830)
+.
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 53
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.82 E-value=7e-05 Score=80.27 Aligned_cols=84 Identities=14% Similarity=0.112 Sum_probs=72.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCcCCCceeEEEECC
Q 047408 626 DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIEIKG 705 (830)
Q Consensus 626 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~~~swi~~~~ 705 (830)
+..+|..+..++...|++++|+..++++++++|+++..|..++.+|...|++++|.+.+++..+
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~---------------- 335 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE---------------- 335 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH----------------
Confidence 3578889999999999999999999999999999999999999999999999999999988764
Q ss_pred EEEEEEeCCcCCCChhHHHHHHHHHHHHHH
Q 047408 706 KVNIFVAGGSSHPHAKKIESLLKRLRLEMK 735 (830)
Q Consensus 706 ~~~~f~~~~~~~p~~~~i~~~l~~l~~~~~ 735 (830)
..|...++...|..+...++
T Consensus 336 ----------l~P~~~~~~~~l~~~~~~~~ 355 (370)
T 1ihg_A 336 ----------IAPEDKAIQAELLKVKQKIK 355 (370)
T ss_dssp ----------HCTTCHHHHHHHHHHHHHHH
T ss_pred ----------hCCCCHHHHHHHHHHHHHHH
Confidence 24556677777776665554
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.81 E-value=8e-05 Score=68.35 Aligned_cols=132 Identities=14% Similarity=0.065 Sum_probs=78.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHH
Q 047408 526 SWTIMIAGYGMHGFGCDAIATFNDMRQAGIE-PDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDL 604 (830)
Q Consensus 526 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~ 604 (830)
+|..+...|...|++++|++.|++..+.... ++... ....+..+...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--------------------------------~~~~~~~l~~~ 58 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA--------------------------------ERIAYSNLGNA 58 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH--------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchH--------------------------------HHHHHHHHHHH
Confidence 5666666777777777777777776642100 11100 01233444444
Q ss_pred HHhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC------CcchHHHHHHH
Q 047408 605 LSRTGNLSEAYRFIEMM----PVAPD----ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPD------NTGYYVLLANV 670 (830)
Q Consensus 605 l~r~g~~~eA~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~------~~~~~~~l~~~ 670 (830)
|...|++++|.+.+++. +..++ ..++..+...+...|++++|...+++++++.+. .+..+..++.+
T Consensus 59 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 138 (164)
T 3ro3_A 59 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNA 138 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHH
Confidence 55555555555544443 00111 345666667777778888888888777755321 23467888999
Q ss_pred HhhhcCHHHHHHHHHHHHh
Q 047408 671 YAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 671 y~~~g~~~~A~~~~~~m~~ 689 (830)
|...|++++|.+.+++..+
T Consensus 139 ~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 139 YTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 9999999999988876543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.81 E-value=9.5e-05 Score=81.09 Aligned_cols=187 Identities=6% Similarity=-0.149 Sum_probs=127.7
Q ss_pred HHHhcCCHHHHHHHhhhCCCC-----C---------------hhhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCChh
Q 047408 502 MYVKCGVLVLARSLFDMIPAK-----D---------------LISWTIMIAGYGMHGFGCDAIATFNDMRQA-GIEPDEV 560 (830)
Q Consensus 502 ~y~k~g~~~~A~~~f~~m~~~-----d---------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~Pd~~ 560 (830)
-+.+.|++++|.+.|..+.+. + ..++..+...|...|++++|++.+.++... +..++..
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 345566777777766654311 0 013667888889999999999988887652 1112222
Q ss_pred H----HHHHHHHHHccCCHHHHHHHHHHhHhhc---CCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-----C--CCC
Q 047408 561 S----FISVLYACSHSGLVDEGWRFFNMMRYEC---NIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-----P--VAP 625 (830)
Q Consensus 561 t----~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-----~--~~p 625 (830)
+ ...+-..+...|..+++.+++....... +..+. ...+..++..|...|++++|.+++++. . .+|
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 1 2222233445688999998887764321 22222 456778899999999999999998875 1 123
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCC---CC----cchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 626 D-ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEP---DN----TGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 626 ~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p---~~----~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
. ..++..++..|...|+++.|...+++++...| ++ ...+..++.+|...|+|++|.+.+...-
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 2 35788888899999999999999998876532 22 2457788899999999999988776553
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.80 E-value=6.1e-05 Score=66.87 Aligned_cols=59 Identities=7% Similarity=-0.061 Sum_probs=35.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhH
Q 047408 526 SWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMR 586 (830)
Q Consensus 526 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 586 (830)
.|..+...|.+.|++++|++.|++.++ +.|+.. .|..+..++.+.|++++|++.|+...
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 455566666666666667666666665 345443 45555566666666666666666554
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0001 Score=62.89 Aligned_cols=96 Identities=13% Similarity=0.031 Sum_probs=58.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHH
Q 047408 563 ISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP---DATIWGSLLCGC 637 (830)
Q Consensus 563 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p---~~~~~~~ll~~~ 637 (830)
..+...+...|++++|..+|+..... .| +...+..+..+|.+.|++++|.+.+++. ...| +..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQL---DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 33334444445555555554444321 12 2344555666666666666666666654 2233 366777777788
Q ss_pred Hhc-CCHHHHHHHHHHHhccCCCCc
Q 047408 638 RIH-HEVKLAEKVAEHVFELEPDNT 661 (830)
Q Consensus 638 ~~~-g~~~~a~~~~~~~~~l~p~~~ 661 (830)
... |+.++|...++++++..|.++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHhCCHHHHHHHHHHHhhcccCCC
Confidence 888 888888888888888888754
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.79 E-value=5e-05 Score=66.76 Aligned_cols=96 Identities=13% Similarity=0.058 Sum_probs=62.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 047408 563 ISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRI 639 (830)
Q Consensus 563 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~ 639 (830)
..+...+...|++++|...|+.... ..| +...|..+..++.+.|++++|++.+++. .+.| +...|..|...+..
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQ---KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3444455566666666666666553 234 3556666777777777777777777765 3445 46778888888888
Q ss_pred cCCHHHHHHHHHHHhccCCCCc
Q 047408 640 HHEVKLAEKVAEHVFELEPDNT 661 (830)
Q Consensus 640 ~g~~~~a~~~~~~~~~l~p~~~ 661 (830)
.|++++|+..++++++++|+++
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 8899999999999998888764
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00018 Score=79.64 Aligned_cols=63 Identities=14% Similarity=0.042 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 627 ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 627 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
..+|..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 478888999999999999999999999999999999999999999999999999999998875
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00018 Score=63.49 Aligned_cols=98 Identities=14% Similarity=0.007 Sum_probs=59.9
Q ss_pred HHHHccCCHHHHHHHHHHhHhhcCCCCCc----chHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHH
Q 047408 567 YACSHSGLVDEGWRFFNMMRYECNIEPKL----EHYACMVDLLSRTGNLSEAYRFIEMM-PVAPD----ATIWGSLLCGC 637 (830)
Q Consensus 567 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~ 637 (830)
..+...|++++|...|+..... .|+. ..+..+..+|.+.|++++|.+.+++. ...|+ ..++..+...+
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3344455555555555554432 1221 24555566666666666666666654 22232 45566777778
Q ss_pred HhcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 047408 638 RIHHEVKLAEKVAEHVFELEPDNTGYYVLL 667 (830)
Q Consensus 638 ~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 667 (830)
...|+.++|...++++++..|+++......
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 888889999999998888888876544433
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00074 Score=70.12 Aligned_cols=208 Identities=10% Similarity=0.042 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCC----------HHHHHHHhhhCC---CCChhhHHHHHHHHHhcCC--h
Q 047408 476 RGREIHGYILRHGISADRNVANAIVDMYVKCGV----------LVLARSLFDMIP---AKDLISWTIMIAGYGMHGF--G 540 (830)
Q Consensus 476 ~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~----------~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~--~ 540 (830)
+|......++... +.+..+++.--..+...|. ++++..+++.+. .++..+|+--.-.+...|+ +
T Consensus 48 eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~ 126 (331)
T 3dss_A 48 SVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 126 (331)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccH
Confidence 4555555555533 2233444433333322222 567777777654 5577788877777777774 7
Q ss_pred HHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHccCC-HHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhc---------
Q 047408 541 CDAIATFNDMRQAGIEPDE-VSFISVLYACSHSGL-VDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRT--------- 608 (830)
Q Consensus 541 ~~A~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~--------- 608 (830)
+++++.++++.+. .|.. ..++.-...+.+.|. +++++++++.+... .| +...|+-...++.+.
T Consensus 127 ~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~---~p~N~SAW~~R~~ll~~l~~~~~~~~~ 201 (331)
T 3dss_A 127 ARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---NFSNYSSWHYRSCLLPQLHPQPDSGPQ 201 (331)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHHSCCC-----
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhhhccccccc
Confidence 8888888888884 4443 356555556667777 68888888888743 34 344555555555444
Q ss_pred -----CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 047408 609 -----GNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIH-----------HEVKLAEKVAEHVFELEPDNTGYYVLLANV 670 (830)
Q Consensus 609 -----g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 670 (830)
+.++++++++++. ...| |..+|+-+-+.+... +.++++...++++++++|++.-.+..++.+
T Consensus 202 ~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~ 281 (331)
T 3dss_A 202 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILL 281 (331)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHH
Confidence 5678888888876 3445 678888666655444 457888899999999999885444333322
Q ss_pred H---hhhcCHHHHHHHHHHHHh
Q 047408 671 Y---AEAEKWEEVKKLREKISR 689 (830)
Q Consensus 671 y---~~~g~~~~A~~~~~~m~~ 689 (830)
. ...|..+++...+.++.+
T Consensus 282 ~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 282 MRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHhhcccccHHHHHHHHHHHHH
Confidence 1 235666677777666654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0003 Score=79.72 Aligned_cols=167 Identities=8% Similarity=0.042 Sum_probs=134.4
Q ss_pred CHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccC
Q 047408 508 VLVLARSLFDMIP---AKDLISWTIMIAGYGMHGF----------GCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSG 573 (830)
Q Consensus 508 ~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g 573 (830)
.-++|.+.++.+. ..+...|+.--..+...|+ ++++++.++++.+ ..|+.. .|..-..++.+.|
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcc
Confidence 3467788887765 4466788877777777777 8999999999998 456554 6777777788888
Q ss_pred --CHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-------
Q 047408 574 --LVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTG-NLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIH------- 640 (830)
Q Consensus 574 --~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g-~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~------- 640 (830)
++++++++++.+.+ +.| +...|+--..++.+.| .+++++++++++ ...| |...|+.....+...
T Consensus 122 ~~~~~~el~~~~k~l~---~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 122 EPNWARELELCARFLE---ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SCCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccHHHHHHHHHHHHh---hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 77999999999984 345 4566777777888889 899999999998 5566 678999888877653
Q ss_pred -------CCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHH
Q 047408 641 -------HEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEE 679 (830)
Q Consensus 641 -------g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 679 (830)
+.++++...++++++++|++..+|.-+.+++.+.|+.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999998555
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00023 Score=62.57 Aligned_cols=115 Identities=6% Similarity=-0.088 Sum_probs=65.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHH
Q 047408 525 ISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEP-DEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVD 603 (830)
Q Consensus 525 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~ 603 (830)
..|..+...+...|++++|+..|++..+. .| +...+..+...+...|++++|..+++...... |+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~--------- 70 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG---RE--------- 70 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---HH---------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc---cc---------
Confidence 34555566666666666666666666553 23 22334444444455555555555554443211 00
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhh
Q 047408 604 LLSRTGNLSEAYRFIEMMPVAPD----ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAE 673 (830)
Q Consensus 604 ~l~r~g~~~eA~~~~~~m~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 673 (830)
..++ ..+|..+...+...|+++.|...+++++++.| ++.....+..++..
T Consensus 71 -------------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 71 -------------------NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp -------------------STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred -------------------cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 0122 45666777777888888888888888888877 45555555555443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.71 E-value=5.4e-05 Score=80.12 Aligned_cols=147 Identities=9% Similarity=-0.057 Sum_probs=84.3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHH
Q 047408 525 ISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDL 604 (830)
Q Consensus 525 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~ 604 (830)
..|..+...+.+.|++++|+..|++.+. +.|+... +...|..+++...+. ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence 3466677788888999999999999887 4565542 233444444443321 1367788889
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHH-hhhcCHHHHH
Q 047408 605 LSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVY-AEAEKWEEVK 681 (830)
Q Consensus 605 l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y-~~~g~~~~A~ 681 (830)
|.+.|++++|++.+++. ...| +...|..+..++...|++++|+..++++++++|+++.++..|..+. ...+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998886 4455 5778999999999999999999999999999999999999998884 4556777888
Q ss_pred HHHHHHHhCC
Q 047408 682 KLREKISRRG 691 (830)
Q Consensus 682 ~~~~~m~~~g 691 (830)
++++.|-+..
T Consensus 320 ~~~~~~l~~~ 329 (338)
T 2if4_A 320 EMYKGIFKGK 329 (338)
T ss_dssp ----------
T ss_pred HHHHHhhCCC
Confidence 8888776543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.69 E-value=5.9e-05 Score=70.09 Aligned_cols=123 Identities=13% Similarity=0.007 Sum_probs=85.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcC------CCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-Ccch
Q 047408 525 ISWTIMIAGYGMHGFGCDAIATFNDMRQAG------IEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEH 597 (830)
Q Consensus 525 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~ 597 (830)
..|......+.+.|++++|+..|++.+..- -.|+...+ . . +.| +...
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~-----------------~---~------~~~~~~~~ 65 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW-----------------V---E------LDRKNIPL 65 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH-----------------H---H------HHHTHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH-----------------H---H------HHHHHHHH
Confidence 456667777777778888877777776520 01111100 0 0 012 2356
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc-chHHHHHHHHhh
Q 047408 598 YACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNT-GYYVLLANVYAE 673 (830)
Q Consensus 598 y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~-~~~~~l~~~y~~ 673 (830)
|..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|...++++++++|+++ .....|..+...
T Consensus 66 ~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~ 144 (162)
T 3rkv_A 66 YANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTER 144 (162)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 777888888899999998888776 4455 467899999999999999999999999999999987 555555544443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0012 Score=68.54 Aligned_cols=239 Identities=9% Similarity=0.007 Sum_probs=159.6
Q ss_pred HhcCCh-HHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhCCCCc
Q 047408 414 AKCGSM-ADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHGISAD 492 (830)
Q Consensus 414 ~k~g~~-~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~ 492 (830)
.+.|.+ ++|+.+++.+...|+-.+++.-.=-.++..+.....|+ .....++++..+...+++.. +.+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~-----------~~~~~l~~EL~~~~~~L~~~-PKn 107 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPE-----------ESAALVKAELGFLESCLRVN-PKS 107 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHH-----------HHHHHHHHHHHHHHHHHHHC-TTC
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccch-----------hhhHHHHHHHHHHHHHHHhC-CCC
Confidence 345555 47899888887665433332221001111111100011 01223677888888888765 567
Q ss_pred hhHHhHHHHHHHhcC--CHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCChh-HHHHH
Q 047408 493 RNVANAIVDMYVKCG--VLVLARSLFDMIP---AKDLISWTIMIAGYGMHGF-GCDAIATFNDMRQAGIEPDEV-SFISV 565 (830)
Q Consensus 493 ~~~~~~Li~~y~k~g--~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~Pd~~-t~~~l 565 (830)
..+|+--...+.+.| .++++..+++.+. .+|...|+--.-.+...|. ++++++.++++.+. .|+.. .++..
T Consensus 108 y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R 185 (331)
T 3dss_A 108 YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYR 185 (331)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHH
T ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHH
Confidence 888888777788888 4899999999876 5677899888888888888 59999999999985 45444 45554
Q ss_pred HHHHHcc--------------CCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhc-----------CCHHHHHHHHH
Q 047408 566 LYACSHS--------------GLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRT-----------GNLSEAYRFIE 619 (830)
Q Consensus 566 l~a~~~~--------------g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~-----------g~~~eA~~~~~ 619 (830)
...+.+. +.++++++++.... .+.|+ ...|+-+-.++.+. +.++++++.++
T Consensus 186 ~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai---~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~ 262 (331)
T 3dss_A 186 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAF---FTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCK 262 (331)
T ss_dssp HHHHHHHSCCC------CCCHHHHHHHHHHHHHHH---HHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccccccccccchHHHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHH
Confidence 4444443 56889999998877 34564 55666566666665 56899999998
Q ss_pred hC-CCCCCHHHHHHHHHHH-----HhcCCHHHHHHHHHHHhccCCCCcchHHHHHHH
Q 047408 620 MM-PVAPDATIWGSLLCGC-----RIHHEVKLAEKVAEHVFELEPDNTGYYVLLANV 670 (830)
Q Consensus 620 ~m-~~~p~~~~~~~ll~~~-----~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 670 (830)
++ .+.||. .|.-+-.+. ...|..++....++++.+++|...+.|.-|..-
T Consensus 263 elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 263 ELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp HHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 87 567775 565332222 245788899999999999999977776655443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00015 Score=66.50 Aligned_cols=136 Identities=12% Similarity=-0.064 Sum_probs=82.1
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHhhhCCC-----CCh----hhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCC----
Q 047408 493 RNVANAIVDMYVKCGVLVLARSLFDMIPA-----KDL----ISWTIMIAGYGMHGFGCDAIATFNDMRQAGI-EPD---- 558 (830)
Q Consensus 493 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~-----~d~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~Pd---- 558 (830)
..++..+...|...|++++|...|++... .+. .++..+...|...|++++|++.|++..+..- .++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45778889999999999999999987542 121 3677777888888888888888888765210 011
Q ss_pred hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 047408 559 EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMPVAP-DATIWGSLLCGC 637 (830)
Q Consensus 559 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p-~~~~~~~ll~~~ 637 (830)
...+..+...+...|++++|.++++..... .++.+..+ ...++..+...+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----------------------------~~~~~~~~~~~~~~~~la~~~ 139 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAI-----------------------------AQELKDRIGEGRACWSLGNAY 139 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-----------------------------HHHccchHhHHHHHHHHHHHH
Confidence 113334444455555555555555443311 00111111 123455566667
Q ss_pred HhcCCHHHHHHHHHHHhccC
Q 047408 638 RIHHEVKLAEKVAEHVFELE 657 (830)
Q Consensus 638 ~~~g~~~~a~~~~~~~~~l~ 657 (830)
...|++++|...+++++++.
T Consensus 140 ~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 140 TALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHTCHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHH
Confidence 77777777777777766543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.66 E-value=5.3e-05 Score=80.19 Aligned_cols=111 Identities=9% Similarity=-0.063 Sum_probs=87.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 047408 562 FISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHH 641 (830)
Q Consensus 562 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g 641 (830)
+..+...+...|++++|...|+.... +.|+.. .+...|+.+++...+. ..+|..+..++...|
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~---~~p~~~-------~~~~~~~~~~~~~~l~-------~~~~~nla~~~~~~g 244 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIA---YMGDDF-------MFQLYGKYQDMALAVK-------NPCHLNIAACLIKLK 244 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHH---HSCHHH-------HHTCCHHHHHHHHHHH-------THHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH---Hhccch-------hhhhcccHHHHHHHHH-------HHHHHHHHHHHHHcC
Confidence 44556677788889999998888763 233321 2334455556555442 137888889999999
Q ss_pred CHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 642 EVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 642 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
++++|+..++++++++|+++..|..++.+|...|++++|.+.+++..+
T Consensus 245 ~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 245 RYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988764
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.64 E-value=6.6e-05 Score=64.24 Aligned_cols=89 Identities=10% Similarity=0.003 Sum_probs=74.0
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCC------cchHHH
Q 047408 595 LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDN------TGYYVL 666 (830)
Q Consensus 595 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~------~~~~~~ 666 (830)
...+..+...+.+.|++++|++.+++. ...| +..+|..+..++...|++++|+..++++++++|++ ...+..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 456677888888999999999988876 3444 57889999999999999999999999999999998 677788
Q ss_pred HHHHHhhhcCHHHHHHH
Q 047408 667 LANVYAEAEKWEEVKKL 683 (830)
Q Consensus 667 l~~~y~~~g~~~~A~~~ 683 (830)
++.++...|++++|.+.
T Consensus 84 ~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHhHhhhHhH
Confidence 88888888877766544
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00031 Score=76.93 Aligned_cols=158 Identities=9% Similarity=-0.052 Sum_probs=118.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCh----------------hHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCc
Q 047408 532 AGYGMHGFGCDAIATFNDMRQAGIEPDE----------------VSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKL 595 (830)
Q Consensus 532 ~~~~~~g~~~~A~~l~~~m~~~g~~Pd~----------------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 595 (830)
..+...|++++|++.|.+..+....... ..+..+...|...|++++|.+++..+....+-.++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 3456789999999999999884322111 136778899999999999999999876543333332
Q ss_pred ----chHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcc------C
Q 047408 596 ----EHYACMVDLLSRTGNLSEAYRFIEMM-------PVAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFEL------E 657 (830)
Q Consensus 596 ----~~y~~lv~~l~r~g~~~eA~~~~~~m-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l------~ 657 (830)
...+.+...+...|+.++|.++++.. ...+. ..++..|...+...|++++|...+++++.. .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 23344555566789999999888765 23333 467888999999999999999999988653 2
Q ss_pred CCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 658 PDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 658 p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
|.....|..++.+|...|+|++|...+++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 33345789999999999999999999877653
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.61 E-value=3.4e-05 Score=67.33 Aligned_cols=94 Identities=9% Similarity=-0.019 Sum_probs=60.9
Q ss_pred cCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 047408 572 SGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEK 648 (830)
Q Consensus 572 ~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~ 648 (830)
.|++++|+..|+.......-.| +...+..+..+|.+.|++++|++.+++. ...| +..+|..+..++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 3555555555555542100013 2455666777777777777777777765 3344 46778888888888999999999
Q ss_pred HHHHHhccCCCCcchHH
Q 047408 649 VAEHVFELEPDNTGYYV 665 (830)
Q Consensus 649 ~~~~~~~l~p~~~~~~~ 665 (830)
.++++++..|+++....
T Consensus 83 ~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHhCCCcHHHHH
Confidence 99999999888875543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00013 Score=80.82 Aligned_cols=115 Identities=14% Similarity=0.042 Sum_probs=89.7
Q ss_pred HHHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhc-----cCCCCc---chHH
Q 047408 604 LLSRTGNLSEAYRFIEMM---------PVAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFE-----LEPDNT---GYYV 665 (830)
Q Consensus 604 ~l~r~g~~~eA~~~~~~m---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----l~p~~~---~~~~ 665 (830)
.+...|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++ +.|+++ ..+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999988775 23444 36899999999999999999999999885 456665 4688
Q ss_pred HHHHHHhhhcCHHHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCcCCCChhHHHHHHHHHHHHHHH
Q 047408 666 LLANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIEIKGKVNIFVAGGSSHPHAKKIESLLKRLRLEMKR 736 (830)
Q Consensus 666 ~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~~~swi~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~~~~ 736 (830)
.|+.+|..+|++++|..++++..+--. +. -...||...++..+|...+.+++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~-~~-----------------lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILL-VT-----------------HGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH-HH-----------------TCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH-HH-----------------hCCCChHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887754110 00 124699999999998887766654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00014 Score=63.02 Aligned_cols=77 Identities=10% Similarity=0.042 Sum_probs=65.4
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 613 EAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 613 eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
+|++.+++. ...| +...|..+...+...|++++|+..++++++++|+++..|..++.+|...|++++|...++...+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355555554 4445 5788889999999999999999999999999999999999999999999999999999887764
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0002 Score=60.29 Aligned_cols=64 Identities=19% Similarity=0.207 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 626 DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 626 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
+..+|..+...+...|++++|+..++++++++|+++..|..++.+|...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5788999999999999999999999999999999999999999999999999999999887654
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.57 E-value=4.3e-05 Score=69.57 Aligned_cols=84 Identities=12% Similarity=0.053 Sum_probs=66.3
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhccCCCCcchHHHHHHHHhh
Q 047408 606 SRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHE----------VKLAEKVAEHVFELEPDNTGYYVLLANVYAE 673 (830)
Q Consensus 606 ~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 673 (830)
.|.+++++|.+.+++. ...| +...|..+..++...++ +++|+..++++++++|+++.+|..|+++|.+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 4556677777777665 3444 45666666666665554 5699999999999999999999999999998
Q ss_pred hc-----------CHHHHHHHHHHHHh
Q 047408 674 AE-----------KWEEVKKLREKISR 689 (830)
Q Consensus 674 ~g-----------~~~~A~~~~~~m~~ 689 (830)
.| ++++|.+.+++..+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHH
Confidence 85 89999999998875
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00024 Score=58.05 Aligned_cols=81 Identities=19% Similarity=0.255 Sum_probs=66.1
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHh
Q 047408 595 LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYA 672 (830)
Q Consensus 595 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 672 (830)
...+..+...+.+.|++++|++.+++. ...| +..+|..+...+...|++++|...++++++++|+++..+..++.+|.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345666777788888888888888775 3334 56788888888999999999999999999999999999999998887
Q ss_pred hhc
Q 047408 673 EAE 675 (830)
Q Consensus 673 ~~g 675 (830)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 665
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00018 Score=78.45 Aligned_cols=113 Identities=8% Similarity=0.036 Sum_probs=80.0
Q ss_pred HHhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhc-----cCCCCc---chHHH
Q 047408 605 LSRTGNLSEAYRFIEMM---------PVAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFE-----LEPDNT---GYYVL 666 (830)
Q Consensus 605 l~r~g~~~eA~~~~~~m---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----l~p~~~---~~~~~ 666 (830)
+.+.|++++|++++++. +..|+ ..+++.|..+|...|++++|+.+++++++ +.|+++ ..|..
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 44555666666655543 12222 35778888888888888888888888774 345554 46888
Q ss_pred HHHHHhhhcCHHHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCcCCCChhHHHHHHHHHHHHHH
Q 047408 667 LANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIEIKGKVNIFVAGGSSHPHAKKIESLLKRLRLEMK 735 (830)
Q Consensus 667 l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~~~swi~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~~~ 735 (830)
|+.+|..+|++++|..++++..+-- .+. -...||...+++..|++...+|+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~-~~~-----------------lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIM-RVT-----------------HGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH-HHH-----------------TCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHH-HHh-----------------cCCCChHHHHHHHHHHHHHHHHh
Confidence 9999999999999999988775410 010 12469999999999998888876
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0006 Score=56.38 Aligned_cols=69 Identities=19% Similarity=0.095 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCC
Q 047408 624 APDATIWGSLLCGCRIHHE---VKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGL 692 (830)
Q Consensus 624 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~ 692 (830)
++|+..|..+..++...++ .++|..+++++++++|+++.....+++++...|++++|...++.+.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3567888888888765555 79999999999999999999999999999999999999999999987543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0037 Score=65.18 Aligned_cols=166 Identities=13% Similarity=0.046 Sum_probs=125.6
Q ss_pred CCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCChhH-HHHHHHHHHcc-C-CHHHHH
Q 047408 507 GVLVLARSLFDMIP---AKDLISWTIMIAGYGMHG-FGCDAIATFNDMRQAGIEPDEVS-FISVLYACSHS-G-LVDEGW 579 (830)
Q Consensus 507 g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~Pd~~t-~~~ll~a~~~~-g-~~~~a~ 579 (830)
+.-++|.++++.+. ..+...||.--..+...| .++++++.++.++. ..|...+ ++.-...+.+. + ..++++
T Consensus 68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~--~nPKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAV--QNLKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--TTCCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 34457777777664 446678998888888888 59999999999998 5676664 55544555555 6 789999
Q ss_pred HHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHH--------HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC------
Q 047408 580 RFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLS--------EAYRFIEMM-PVAP-DATIWGSLLCGCRIHHE------ 642 (830)
Q Consensus 580 ~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~--------eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~------ 642 (830)
++++.+. ...|. -..|+--..++.+.|.++ +++++++++ ...| |...|+-........+.
T Consensus 146 ~~~~k~L---~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 146 EYIHGSL---LPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHT---SSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHH---HhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchH
Confidence 9999987 45564 445554444555555555 889988887 3445 78899988888877776
Q ss_pred -HHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCH
Q 047408 643 -VKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKW 677 (830)
Q Consensus 643 -~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~ 677 (830)
++++...++++++++|+|...+.-+..++.+.|+-
T Consensus 223 ~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCC
Confidence 78999999999999999999999999998887764
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0013 Score=55.96 Aligned_cols=65 Identities=9% Similarity=-0.025 Sum_probs=60.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 625 PDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 625 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
++...|..+...+...|++++|...++++++++|+++..+..++.+|...|++++|.+.++...+
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 35677888999999999999999999999999999999999999999999999999999988775
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0015 Score=53.05 Aligned_cols=63 Identities=21% Similarity=0.287 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 627 ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 627 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
...|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|.+.+++..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 567888888999999999999999999999999999999999999999999999999887764
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0023 Score=72.40 Aligned_cols=148 Identities=10% Similarity=0.045 Sum_probs=119.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhH-HHHHHHHHHccCC----------HHHHHHHHHHhHhhcCCCCC-cchHHHHHHH
Q 047408 537 HGFGCDAIATFNDMRQAGIEPDEVS-FISVLYACSHSGL----------VDEGWRFFNMMRYECNIEPK-LEHYACMVDL 604 (830)
Q Consensus 537 ~g~~~~A~~l~~~m~~~g~~Pd~~t-~~~ll~a~~~~g~----------~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~ 604 (830)
....++|++.++++.. +.|+..| |+.--.++.+.|. ++++++.++.+.. ..|. ...|.--..+
T Consensus 42 ~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~---~~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 42 GELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR---VNPKSYGTWHHRCWL 116 (567)
T ss_dssp TCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH---hCCCCHHHHHHHHHH
Confidence 3446889999999998 6888876 4444455555666 9999999999984 3454 5567777778
Q ss_pred HHhcC--CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHhccCCCCcchHHHHHHHHhhh-----
Q 047408 605 LSRTG--NLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHH-EVKLAEKVAEHVFELEPDNTGYYVLLANVYAEA----- 674 (830)
Q Consensus 605 l~r~g--~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~----- 674 (830)
+.+.| ++++|+++++++ ...| +..+|+.-.......| ..+++...++++++.+|.|..+|...+.++.+.
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence 88999 779999999998 4445 6899999988888888 899999999999999999999999999998874
Q ss_pred ---------cCHHHHHHHHHHHHh
Q 047408 675 ---------EKWEEVKKLREKISR 689 (830)
Q Consensus 675 ---------g~~~~A~~~~~~m~~ 689 (830)
++++++.+..+..-.
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHHHh
Confidence 678888888766543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00019 Score=65.29 Aligned_cols=101 Identities=13% Similarity=0.009 Sum_probs=59.6
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHH
Q 047408 535 GMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSE 613 (830)
Q Consensus 535 ~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~e 613 (830)
.+.+++++|++.+++..+ ..|+.. .+..+..++...|.++.|.... +.+++
T Consensus 13 ~r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al--------------------------~~~~e 64 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAK--------------------------QMIQE 64 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHH--------------------------HHHHH
T ss_pred HHHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhH--------------------------hHHHH
Confidence 344556666666666666 344433 4444555555554433111110 01346
Q ss_pred HHHHHHhC-CCCCC-HHHHHHHHHHHHhc-----------CCHHHHHHHHHHHhccCCCCcch
Q 047408 614 AYRFIEMM-PVAPD-ATIWGSLLCGCRIH-----------HEVKLAEKVAEHVFELEPDNTGY 663 (830)
Q Consensus 614 A~~~~~~m-~~~p~-~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~l~p~~~~~ 663 (830)
|+..|++. .+.|+ ..+|..|..+|... |++++|+..++++++++|++..+
T Consensus 65 Ai~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 65 AITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 66665554 44453 45666666666655 58999999999999999998533
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00026 Score=76.96 Aligned_cols=81 Identities=14% Similarity=0.080 Sum_probs=56.8
Q ss_pred CCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhc-----cCCCCc---chHHHHHHH
Q 047408 609 GNLSEAYRFIEMM---------PVAPDA-TIWGSLLCGCRIHHEVKLAEKVAEHVFE-----LEPDNT---GYYVLLANV 670 (830)
Q Consensus 609 g~~~eA~~~~~~m---------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----l~p~~~---~~~~~l~~~ 670 (830)
|++++|++++++. +..|+. .+++.|..+|...|++++|+.+++++++ +.|+++ ..|..|+.+
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4555555555442 233432 5677788888888888888888887764 345554 457888999
Q ss_pred HhhhcCHHHHHHHHHHHHh
Q 047408 671 YAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 671 y~~~g~~~~A~~~~~~m~~ 689 (830)
|..+|++++|..++++..+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 9999999999998877654
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0074 Score=54.02 Aligned_cols=88 Identities=11% Similarity=0.018 Sum_probs=47.4
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhh----
Q 047408 602 VDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRI----HHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAE---- 673 (830)
Q Consensus 602 v~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~---- 673 (830)
..+|...+..++|.+.+++.-..-++..+..|...|.. .+|.++|...++++.+. .++..+..|+.+|..
T Consensus 32 g~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~ 109 (138)
T 1klx_A 32 SLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGV 109 (138)
T ss_dssp HHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSS
T ss_pred HHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCC
Confidence 33333333444444444443212344444444444444 55666666666666554 445566666777766
Q ss_pred hcCHHHHHHHHHHHHhCC
Q 047408 674 AEKWEEVKKLREKISRRG 691 (830)
Q Consensus 674 ~g~~~~A~~~~~~m~~~g 691 (830)
.+++++|.+.+++..+.|
T Consensus 110 ~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 110 VKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp CCCHHHHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHHHHCC
Confidence 667777777666666554
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0037 Score=51.87 Aligned_cols=63 Identities=17% Similarity=0.227 Sum_probs=34.2
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchH
Q 047408 602 VDLLSRTGNLSEAYRFIEMM-PVAP-DAT-IWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYY 664 (830)
Q Consensus 602 v~~l~r~g~~~eA~~~~~~m-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~ 664 (830)
+..+.+.|++++|.+.+++. ...| +.. .|..+...+...|++++|+..++++++++|+++..+
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 34455556666666655554 2233 234 555555555556666666666666666666555443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0026 Score=54.66 Aligned_cols=80 Identities=9% Similarity=-0.024 Sum_probs=55.5
Q ss_pred HHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 047408 578 GWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVF 654 (830)
Q Consensus 578 a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 654 (830)
+.+.|+... ...| +...+..+...|.+.|++++|++.+++. ...| +...|..+...+...|++++|...+++++
T Consensus 4 a~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAML---AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHH---TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444555544 2334 3456666777777777777777777665 3334 46678888888888889999999988888
Q ss_pred ccCCCC
Q 047408 655 ELEPDN 660 (830)
Q Consensus 655 ~l~p~~ 660 (830)
++.|++
T Consensus 81 ~~~~~~ 86 (115)
T 2kat_A 81 AAAQSR 86 (115)
T ss_dssp HHHHHH
T ss_pred Hhcccc
Confidence 887753
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.012 Score=61.19 Aligned_cols=141 Identities=15% Similarity=0.025 Sum_probs=75.1
Q ss_pred CCChhhHHHHHHHHHh--cCC---hHHHHHHHHHHHHcCCCCChhH-HHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC
Q 047408 521 AKDLISWTIMIAGYGM--HGF---GCDAIATFNDMRQAGIEPDEVS-FISVLYACSHSGLVDEGWRFFNMMRYECNIEPK 594 (830)
Q Consensus 521 ~~d~~~~~~li~~~~~--~g~---~~~A~~l~~~m~~~g~~Pd~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 594 (830)
..+...|...+.|... .+. ..+|+.+|++.++ ..|+... +..+..++.. . ...+ |.
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~----------~----~~~~--~~ 252 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIV----------R----HSQH--PL 252 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH----------H----HHHS--CC
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH----------H----hccC--CC
Confidence 4477788887766542 233 5889999999998 6888653 4333333320 0 0001 11
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhh
Q 047408 595 LEHYACMVDLLSRTGNLSEAYRFIEMMPV-APDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAE 673 (830)
Q Consensus 595 ~~~y~~lv~~l~r~g~~~eA~~~~~~m~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 673 (830)
.... ...+.+|.+-...++. ..++.+|.++.-.+...|++++|...++++++++|+ ...|..++.++.-
T Consensus 253 ~~~~---------~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~ 322 (372)
T 3ly7_A 253 DEKQ---------LAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEM 322 (372)
T ss_dssp CHHH---------HHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH
T ss_pred chhh---------HHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHH
Confidence 1000 0011223332233322 224555655555555556666666666666666653 4455666666666
Q ss_pred hcCHHHHHHHHHHHHh
Q 047408 674 AEKWEEVKKLREKISR 689 (830)
Q Consensus 674 ~g~~~~A~~~~~~m~~ 689 (830)
.|++++|.+.+++...
T Consensus 323 ~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 323 KGMNREAADAYLTAFN 338 (372)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 6666666666655443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0051 Score=66.74 Aligned_cols=69 Identities=9% Similarity=-0.001 Sum_probs=51.9
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhc-----cCCCC
Q 047408 596 EHYACMVDLLSRTGNLSEAYRFIEMM---------PVAPDA-TIWGSLLCGCRIHHEVKLAEKVAEHVFE-----LEPDN 660 (830)
Q Consensus 596 ~~y~~lv~~l~r~g~~~eA~~~~~~m---------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----l~p~~ 660 (830)
.+++.|..+|...|++++|+.++++. +..|+. .+++.|...|...|++++|+.+++++++ +.|++
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~H 420 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDH 420 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 45666777777777777777776664 345654 6788999999999999999999998875 57887
Q ss_pred cchH
Q 047408 661 TGYY 664 (830)
Q Consensus 661 ~~~~ 664 (830)
+.+-
T Consensus 421 p~~~ 424 (433)
T 3qww_A 421 PYIS 424 (433)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 7543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0044 Score=55.54 Aligned_cols=113 Identities=12% Similarity=-0.064 Sum_probs=89.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHh----cCCHH
Q 047408 537 HGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSR----TGNLS 612 (830)
Q Consensus 537 ~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r----~g~~~ 612 (830)
.++.++|++.|++..+.| .|+.. +...+...+.+++|.++|+...+. -+...+..|..+|.. .++.+
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 456889999999999877 44443 556677778889999999987643 356777888888887 88999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhccCC
Q 047408 613 EAYRFIEMMPVAPDATIWGSLLCGCRI----HHEVKLAEKVAEHVFELEP 658 (830)
Q Consensus 613 eA~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~l~p 658 (830)
+|.+.+++.--.-++..+..|...|.. .+|.++|...++++.+...
T Consensus 79 ~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 79 KAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 999999987434567778888888887 8899999999999988753
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0077 Score=54.04 Aligned_cols=90 Identities=12% Similarity=0.159 Sum_probs=69.8
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhccC-C-CCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCcCCCcee
Q 047408 625 PDATIWGSLLCGCRIHH---EVKLAEKVAEHVFELE-P-DNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCS 699 (830)
Q Consensus 625 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~l~-p-~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~~~s 699 (830)
++..+.-.+..++.+.+ ++++|..+++.+++.+ | ++...+..|+-.|++.|++++|.+.++...+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~---------- 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ---------- 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH----------
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh----------
Confidence 57777777777777777 6668888888888887 6 4567778888888999999999988887764
Q ss_pred EEEECCEEEEEEeCCcCCCChhHHHHHHHHHHHHHHHcCcc
Q 047408 700 WIEIKGKVNIFVAGGSSHPHAKKIESLLKRLRLEMKREGYF 740 (830)
Q Consensus 700 wi~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~~~~~g~~ 740 (830)
.+|+..+.....+.+.+++++.|++
T Consensus 100 ----------------ieP~n~QA~~Lk~~ie~~~~kdgl~ 124 (152)
T 1pc2_A 100 ----------------TEPQNNQAKELERLIDKAMKKDGLV 124 (152)
T ss_dssp ----------------HCTTCHHHHHHHHHHHHHHHHTTCC
T ss_pred ----------------cCCCCHHHHHHHHHHHHHHHHhhHH
Confidence 3566677777777777888887764
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.009 Score=64.91 Aligned_cols=71 Identities=15% Similarity=-0.022 Sum_probs=49.6
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhc-----cCCCC
Q 047408 596 EHYACMVDLLSRTGNLSEAYRFIEMM---------PVAPDA-TIWGSLLCGCRIHHEVKLAEKVAEHVFE-----LEPDN 660 (830)
Q Consensus 596 ~~y~~lv~~l~r~g~~~eA~~~~~~m---------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----l~p~~ 660 (830)
.+++.|..+|...|++++|++++++. +..|+. .+++.|...|...|++++|+.+++++++ +.|++
T Consensus 330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~H 409 (429)
T 3qwp_A 330 KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREH 409 (429)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34555666666666666666666554 345553 6788888889999999999999988875 57888
Q ss_pred cchHHH
Q 047408 661 TGYYVL 666 (830)
Q Consensus 661 ~~~~~~ 666 (830)
+.+-..
T Consensus 410 p~~~~~ 415 (429)
T 3qwp_A 410 SLIEDL 415 (429)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 755443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.014 Score=60.85 Aligned_cols=40 Identities=10% Similarity=-0.160 Sum_probs=34.9
Q ss_pred HHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCC
Q 047408 652 HVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRG 691 (830)
Q Consensus 652 ~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g 691 (830)
..++++|.++.+|..++.++...|++++|...++++...+
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln 307 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE 307 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 3457789999999999999999999999999999988754
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0084 Score=50.06 Aligned_cols=62 Identities=15% Similarity=0.157 Sum_probs=35.6
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhH
Q 047408 523 DLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMR 586 (830)
Q Consensus 523 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 586 (830)
+...|..+...|...|++++|++.|++.++ ..|+.. .+..+..++...|++++|.+.|+...
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444555666666666666666666666665 234332 45555555666666666666665544
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.01 Score=49.01 Aligned_cols=86 Identities=12% Similarity=0.137 Sum_probs=53.9
Q ss_pred HHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cc-hHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhc
Q 047408 565 VLYACSHSGLVDEGWRFFNMMRYECNIEPK-LE-HYACMVDLLSRTGNLSEAYRFIEMM-PVAPDA-TIWGSLLCGCRIH 640 (830)
Q Consensus 565 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~-~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~-~~~~~ll~~~~~~ 640 (830)
....+...|++++|.+.|+...+. .|+ .. .+..+..+|.+.|++++|.+.+++. ...|+. .+|..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT---EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH---CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 345566777888888887777632 343 45 6777777777788888887777765 333432 22211
Q ss_pred CCHHHHHHHHHHHhccCCCCc
Q 047408 641 HEVKLAEKVAEHVFELEPDNT 661 (830)
Q Consensus 641 g~~~~a~~~~~~~~~l~p~~~ 661 (830)
+.++++...++++...+|+++
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHHhccCcccc
Confidence 455666666666666666654
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.018 Score=57.52 Aligned_cols=87 Identities=11% Similarity=0.115 Sum_probs=70.7
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHhccCCCC-cchHHHHHHHHhhh-cCHHH
Q 047408 611 LSEAYRFIEMM-PVAPD---ATIWGSLLCGCRI-----HHEVKLAEKVAEHVFELEPDN-TGYYVLLANVYAEA-EKWEE 679 (830)
Q Consensus 611 ~~eA~~~~~~m-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~l~p~~-~~~~~~l~~~y~~~-g~~~~ 679 (830)
+.+|...+++. .+.|+ ...|.+|...|.. -|+.++|+..++++++++|+. ..+++.+++.|+.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45555555554 55676 5688888888877 499999999999999999975 99999999999985 99999
Q ss_pred HHHHHHHHHhCCCcCCCc
Q 047408 680 VKKLREKISRRGLKKNPG 697 (830)
Q Consensus 680 A~~~~~~m~~~g~~~~~~ 697 (830)
|.+.+++......+..|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998866654454
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.93 E-value=0.15 Score=60.53 Aligned_cols=154 Identities=14% Similarity=0.110 Sum_probs=93.9
Q ss_pred HHHHhcCChHHHHH-HHhcCC-CCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhC
Q 047408 411 DMYAKCGSMADAES-VFNQMP-VKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHG 488 (830)
Q Consensus 411 ~~y~k~g~~~~A~~-~f~~m~-~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 488 (830)
......+++++|.+ ++..++ .. .+..++..+...|..+.|.++..
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~~~~---------------------------~~~~~~~~l~~~~~~~~a~~~~~------ 653 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVEGKD---------------------------SLTKIARFLEGQEYYEEALNISP------ 653 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCCCHH---------------------------HHHHHHHHHHHTTCHHHHHHHCC------
T ss_pred hHHHHhCCHHHHHHHHHhcCCchH---------------------------HHHHHHHHHHhCCChHHheecCC------
Confidence 34456788999988 665543 11 11233344445555666555432
Q ss_pred CCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 047408 489 ISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYA 568 (830)
Q Consensus 489 ~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a 568 (830)
+. ..-.+.+..+|++++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...
T Consensus 654 ---~~---~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l 716 (814)
T 3mkq_A 654 ---DQ---DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLL 716 (814)
T ss_dssp ---CH---HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHH
T ss_pred ---Cc---chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHH
Confidence 11 112456778999999999988764 567999999999999999999999998754 3334444
Q ss_pred HHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 047408 569 CSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM 621 (830)
Q Consensus 569 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m 621 (830)
+...|+.+...++-+..... ..++.-..+|.+.|++++|++++.++
T Consensus 717 ~~~~~~~~~~~~~~~~a~~~-------~~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 717 HSSFNNKEGLVTLAKDAETT-------GKFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHTTCHHHHHHHHHHHHHT-------TCHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHHc-------CchHHHHHHHHHcCCHHHHHHHHHHc
Confidence 44456555544443333211 12333444555666666666665554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.92 E-value=0.09 Score=62.38 Aligned_cols=154 Identities=11% Similarity=-0.015 Sum_probs=91.2
Q ss_pred HHhcCCHHHHHH-HhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHH
Q 047408 503 YVKCGVLVLARS-LFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRF 581 (830)
Q Consensus 503 y~k~g~~~~A~~-~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~ 581 (830)
....|++++|.+ ++..++.+ .....++..+...|..++|+++.+.-. . - .......|++++|.++
T Consensus 609 ~~~~~~~~~a~~~~l~~i~~~--~~~~~~~~~l~~~~~~~~a~~~~~~~~-------~-~----f~~~l~~~~~~~A~~~ 674 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNVEGK--DSLTKIARFLEGQEYYEEALNISPDQD-------Q-K----FELALKVGQLTLARDL 674 (814)
T ss_dssp HHHTTCHHHHHHHTGGGCCCH--HHHHHHHHHHHHTTCHHHHHHHCCCHH-------H-H----HHHHHHHTCHHHHHHH
T ss_pred HHHhCCHHHHHHHHHhcCCch--HHHHHHHHHHHhCCChHHheecCCCcc-------h-h----eehhhhcCCHHHHHHH
Confidence 345678888887 66554411 122667777788888888887653211 1 1 2233467888888887
Q ss_pred HHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCC----------CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047408 582 FNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMPV----------APDATIWGSLLCGCRIHHEVKLAEKVAE 651 (830)
Q Consensus 582 ~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~----------~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 651 (830)
.+.+ .+...|..+.+++.+.|+++.|++.|.++.. .-+..-+..+.......|+++.|..++.
T Consensus 675 ~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~ 747 (814)
T 3mkq_A 675 LTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYW 747 (814)
T ss_dssp HTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 5443 3456788888888888888888888888741 1122222233333444444444444433
Q ss_pred HHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHH
Q 047408 652 HVFELEPDNTGYYVLLANVYAEAEKWEEVKKLRE 685 (830)
Q Consensus 652 ~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~ 685 (830)
+. +-+....++|.+.|+|++|..+.+
T Consensus 748 ~~--------g~~~~a~~~~~~~~~~~~A~~lA~ 773 (814)
T 3mkq_A 748 IA--------GDIQGAKDLLIKSQRFSEAAFLGS 773 (814)
T ss_dssp HH--------TCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred Hc--------CCHHHHHHHHHHcCChHHHHHHHH
Confidence 31 223445566777777777777644
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.48 E-value=0.83 Score=39.37 Aligned_cols=139 Identities=9% Similarity=0.074 Sum_probs=87.8
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHH
Q 047408 536 MHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAY 615 (830)
Q Consensus 536 ~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~ 615 (830)
-.|..++..++..+..... +..-++-++--...+-+-+--.+.++.+-+-+.+ ..+|++....
T Consensus 19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrVi 81 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSVV 81 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHHH
T ss_pred HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHHH
Confidence 3466666666666665421 2222333332222333333334444444332222 3466666666
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCc
Q 047408 616 RFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLK 693 (830)
Q Consensus 616 ~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~ 693 (830)
.-+-.+. .+....+--|......|.-|.-..+...++.-+|-++...+-+++.|.+.|...+|.+++++.=++|++
T Consensus 82 ~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 82 ECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 6665553 233344555677788999999999999877777777899999999999999999999999999999885
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.20 E-value=0.068 Score=44.80 Aligned_cols=71 Identities=10% Similarity=0.096 Sum_probs=53.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 047408 597 HYACMVDLLSRTGNLSEAYRFIEMM-----P----VAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLL 667 (830)
Q Consensus 597 ~y~~lv~~l~r~g~~~eA~~~~~~m-----~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 667 (830)
-+-.|+..+.+.|+++.|...++.. + -.+...++..|..++.+.|+++.|...++++++++|+++.+...+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 3445666666777777776666654 1 123467889999999999999999999999999999997765544
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.05 E-value=0.093 Score=42.94 Aligned_cols=74 Identities=11% Similarity=-0.008 Sum_probs=57.0
Q ss_pred CCcchHHHHHHHHHhcCC---HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHH
Q 047408 593 PKLEHYACMVDLLSRTGN---LSEAYRFIEMM-PVAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLL 667 (830)
Q Consensus 593 p~~~~y~~lv~~l~r~g~---~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 667 (830)
++...+..+..++...+. .++|.+++++. ...|+ +..+.-+...+...|++++|...++++++.+|+ ......+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~~i 82 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRVTI 82 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHHH
Confidence 356777788888765554 68999998886 55664 567777778899999999999999999999999 4444444
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.00 E-value=0.014 Score=62.02 Aligned_cols=391 Identities=12% Similarity=0.125 Sum_probs=214.5
Q ss_pred CCCcchhHHHHHHHhcCChHHHHHHHHHhhcCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCccchHHHHHH
Q 047408 61 CKTKNYNAEIGRFCEVGNLEKAMEVLYSSEKSKIDTKTYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLGSKLVF 140 (830)
Q Consensus 61 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li~ 140 (830)
..+..|..+-.+....+...+|++-|-+. -+|+.|..++.++.+.|.+++-...+....+.. .+ +.+-+.|+-
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke-~~IDteLi~ 124 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RE-SYVETELIF 124 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CS-TTTTHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cc-cccHHHHHH
Confidence 35678999999999999999988777443 357789999999999999999888887776652 33 678899999
Q ss_pred HHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHH
Q 047408 141 MFVTCGDLKEGRRVFNKIDNGKVFIWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRRVKDA 220 (830)
Q Consensus 141 ~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~A 220 (830)
+|+|.+++.+-.+.. ..||+.--..+-.-|...|.++.|.-+|..+. -|..|-..+...|+ ...|
T Consensus 125 ayAk~~rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------N~akLAstLV~L~~---yq~A 189 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGE---YQAA 189 (624)
T ss_dssp HHHTSCSSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSG---GGSS
T ss_pred HHHhhCcHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------cHHHHHHHHHHHHH---HHHH
Confidence 999999977654433 24666666777777888888887776665432 12222222333332 2211
Q ss_pred HHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-
Q 047408 221 HKLFDELSDRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKACFS- 299 (830)
Q Consensus 221 ~~lf~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~- 299 (830)
.+.-. ...++.+|-.+-.+|...+.+.-|.-.--.+.- .||. ...++.-|-..|.+++-..+++..+ |++
T Consensus 190 VdaAr--KAns~ktWKeV~~ACvd~~EfrLAqicGLniIv---hade--L~elv~~YE~~G~f~ELIsLlEagl--glEr 260 (624)
T 3lvg_A 190 VDGAR--KANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HADE--LEELINYYQDRGYFEELITMLEAAL--GLER 260 (624)
T ss_dssp TTTTT--TCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSSC--CSGGGSSSSTTCCCTTSTTTHHHHT--TSTT
T ss_pred HHHHH--hcCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHHH--HHHHHHHHHhCCCHHHHHHHHHHHh--CCCc
Confidence 11100 124566666666666666666555443333321 1111 1223333445555554444444333 222
Q ss_pred CCchHHHHHHHHhhcCCChHHHHHHHhhcCC----C-------CeehHHHHHHHHHhcCChhHHHHH-------------
Q 047408 300 KEISFNNTLLDMYSKCGDLDGAIRVFEKMGE----R-------SVVSWTSMIAGYAREGVFDGAIRL------------- 355 (830)
Q Consensus 300 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~----~-------d~~~~~~li~~~~~~g~~~~A~~l------------- 355 (830)
....+++.|.-.|+|- +.++-.+-++..-. | ....|.-++-.|.+..+++.|...
T Consensus 261 AHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~ 339 (624)
T 3lvg_A 261 AHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQ 339 (624)
T ss_dssp CCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGG
T ss_pred hhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHH
Confidence 3445556666666655 23333333322211 1 334566666666666666655432
Q ss_pred HHHHHHcCCCCCcchH---------------HHHHHHhhc-------------cCcchhhhhHHHHHHhhcCCCchhhHH
Q 047408 356 FRGMVREGIEPDVYAI---------------TSILHACAC-------------DGLLEIGKDVHDYIKENDMQSSLYVSN 407 (830)
Q Consensus 356 ~~~m~~~g~~pd~~t~---------------~~ll~a~~~-------------~~~~~~a~~~~~~~~~~g~~~~~~~~~ 407 (830)
|.+...+ .+|...| +-||.++.. .+++...+..+..+.. ..+..+-.
T Consensus 340 Fkdii~K--VaN~EiyYKAi~FYL~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~---~N~~aVNe 414 (624)
T 3lvg_A 340 FKDIITK--VANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQN---HNNKSVNE 414 (624)
T ss_dssp GTTTGGG--CSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCC---SCCHHHHH
T ss_pred HHHHHHH--cchHHHHHHHHHHHHHhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHH---hhHHHHHH
Confidence 1111110 1222222 223333322 2233333322222221 22445666
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHH----------HHHHHHHHHh---CC--CCCccccccchhhhcchh
Q 047408 408 ALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIG----------ALDLFVAMLQ---NF--EPDGVTMACILPACASLA 472 (830)
Q Consensus 408 ~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~----------al~~f~~m~~---~~--~pd~~t~~~ll~a~~~~~ 472 (830)
+|-+.|....+++.-+.-.+.-..-|.+.....+. |.-+|++-.+ .- --....|.-.+...+..+
T Consensus 415 Aln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~KkDklykDAietAa~S~ 494 (624)
T 3lvg_A 415 SLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSLYKDAMQYASESK 494 (624)
T ss_dssp HHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSSTTCCTTGGGTTTTTCC
T ss_pred HHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHhcccHHHHHHHHHHcC
Confidence 77788888887776666555555445444433333 2222222111 00 122334666677777788
Q ss_pred hHHHHHHHHHHHHHhC
Q 047408 473 ALERGREIHGYILRHG 488 (830)
Q Consensus 473 ~~~~a~~i~~~~~~~g 488 (830)
+.+.+.+++.+.++.|
T Consensus 495 ~~elaeeLL~yFv~~g 510 (624)
T 3lvg_A 495 DTELAEELLQWFLQEE 510 (624)
T ss_dssp CTTHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcC
Confidence 8888888888888766
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.62 Score=42.75 Aligned_cols=130 Identities=16% Similarity=0.134 Sum_probs=86.5
Q ss_pred HHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHH
Q 047408 500 VDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGW 579 (830)
Q Consensus 500 i~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~ 579 (830)
.+....+|+++.|.++-+.+ .+...|..+......+|+.+-|.+.|.+... |..++--|.-.|+.+.-.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 34556788899988887766 4677899999999999999999988888654 445555556667766555
Q ss_pred HHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047408 580 RFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHV 653 (830)
Q Consensus 580 ~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 653 (830)
++-+....+ .-++.-...+.-.|+++++.+++.+...-|.+.. ..+.+|..+.|.++.+.+
T Consensus 81 kla~iA~~~-------g~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 81 KMQNIAQTR-------EDFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHT-------TCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHC-------ccHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 444333221 1244444556667888888888887754333322 124577777777776655
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.39 E-value=0.17 Score=43.53 Aligned_cols=88 Identities=13% Similarity=0.106 Sum_probs=50.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHH---HHHHHHHHhccC-C-CCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCcCCCcee
Q 047408 625 PDATIWGSLLCGCRIHHEVKL---AEKVAEHVFELE-P-DNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCS 699 (830)
Q Consensus 625 p~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~l~-p-~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~~~s 699 (830)
|+..+--.+.+++.+.++... |+.+++.++..+ | ..-.....|+-.|.+.|++++|.+..+.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~---------- 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ---------- 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH----------
Confidence 444444445555555554333 666666666655 4 2334556666667777777777776666553
Q ss_pred EEEECCEEEEEEeCCcCCCChhHHHHHHHHHHHHHHHcC
Q 047408 700 WIEIKGKVNIFVAGGSSHPHAKKIESLLKRLRLEMKREG 738 (830)
Q Consensus 700 wi~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~~~~~g 738 (830)
.+|.+.+.......+.++|.+.|
T Consensus 103 ----------------~eP~n~QA~~Lk~~i~~~i~kdG 125 (126)
T 1nzn_A 103 ----------------TEPQNNQAKELERLIDKAMKKDG 125 (126)
T ss_dssp ----------------HCTTCHHHHHHHHHHHHHHHHC-
T ss_pred ----------------hCCCCHHHHHHHHHHHHHHHhcc
Confidence 34555566665556666666665
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.14 E-value=0.76 Score=40.25 Aligned_cols=91 Identities=9% Similarity=0.096 Sum_probs=62.6
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhccCCCC-cchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCcCCCcee
Q 047408 624 APDATIWGSLLCGCRIHH---EVKLAEKVAEHVFELEPDN-TGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCS 699 (830)
Q Consensus 624 ~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~l~p~~-~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~~~s 699 (830)
.|+..+--.+.+++.+.. +..+|+.+++.++..+|+. -.....|+-.|.+.|++++|.+..+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~---------- 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE---------- 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH----------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh----------
Confidence 455554444555555544 4567888888888877753 34556778888888888888888777764
Q ss_pred EEEECCEEEEEEeCCcCCCChhHHHHHHHHHHHHHHHcCcc
Q 047408 700 WIEIKGKVNIFVAGGSSHPHAKKIESLLKRLRLEMKREGYF 740 (830)
Q Consensus 700 wi~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~~~~~g~~ 740 (830)
..|.+.+.....+.+.++|.+.|.+
T Consensus 106 ----------------~eP~n~QA~~Lk~~Ie~~i~kdGli 130 (144)
T 1y8m_A 106 ----------------HERNNKQVGALKSMVEDKIQKETLK 130 (144)
T ss_dssp ----------------TCCCCHHHHHHHHHHHHHHHHTTTT
T ss_pred ----------------cCCCcHHHHHHHHHHHHHHHHhchh
Confidence 3566667777667777788887764
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.92 E-value=0.14 Score=58.83 Aligned_cols=52 Identities=19% Similarity=0.125 Sum_probs=49.2
Q ss_pred HHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 637 CRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 637 ~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
|...|+++.|..++++++...|.+-..+..|+.+|...|+|+.|.-.+..+.
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 6788999999999999999999999999999999999999999999988774
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=93.82 E-value=0.36 Score=48.19 Aligned_cols=138 Identities=12% Similarity=0.035 Sum_probs=74.3
Q ss_pred hhHHHHHHHHHHHHHhCCCCchhHHhHHHHH------HHhcCCHHHHHHHhhhCCCCCh--hhHHHHHH-HHHhc--CC-
Q 047408 472 AALERGREIHGYILRHGISADRNVANAIVDM------YVKCGVLVLARSLFDMIPAKDL--ISWTIMIA-GYGMH--GF- 539 (830)
Q Consensus 472 ~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~------y~k~g~~~~A~~~f~~m~~~d~--~~~~~li~-~~~~~--g~- 539 (830)
.+...|++++....+.+. .+|-.- -.+.|+..+-.+.+.+....|+ ..|..++. +++.. |.
T Consensus 101 ~~~~RA~~Ly~ra~~y~~-------raL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~ 173 (301)
T 3u64_A 101 EAYSRARKLYLRGARYAL-------SSLETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGS 173 (301)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTS
T ss_pred hhHHHHHHHHHHHHHHHH-------HHHHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCCh
Confidence 456677777777666542 122211 1234454555555666654443 46776665 33332 22
Q ss_pred -----hHHHHHHHHHHHHcCCCCC---hhHHHHHHHHHHcc-----CCHHHHHHHHHHhHhhcCCCCC--cchHHHHHHH
Q 047408 540 -----GCDAIATFNDMRQAGIEPD---EVSFISVLYACSHS-----GLVDEGWRFFNMMRYECNIEPK--LEHYACMVDL 604 (830)
Q Consensus 540 -----~~~A~~l~~~m~~~g~~Pd---~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~~~p~--~~~y~~lv~~ 604 (830)
..+|..++++.++ +.|+ ...+..+...|... |+.++|.++|++.. .+.|+ ..++....+.
T Consensus 174 ~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL---~LnP~~~id~~v~YA~~ 248 (301)
T 3u64_A 174 ALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLT---RYCSAHDPDHHITYADA 248 (301)
T ss_dssp CCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHH---HHCCTTCSHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHH---HhCCCCCchHHHHHHHH
Confidence 4566666666666 5666 23455555555553 66666666666655 34452 5555555555
Q ss_pred HHhc-CCHHHHHHHHHhC
Q 047408 605 LSRT-GNLSEAYRFIEMM 621 (830)
Q Consensus 605 l~r~-g~~~eA~~~~~~m 621 (830)
|++. |+.++|.+.+++.
T Consensus 249 l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 249 LCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp TTTTTTCHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHH
Confidence 5553 5555555555553
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=93.23 E-value=0.61 Score=38.78 Aligned_cols=64 Identities=13% Similarity=-0.037 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccC-------CCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 626 DATIWGSLLCGCRIHHEVKLAEKVAEHVFELE-------PDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 626 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~-------p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
++.-.-.|...+...|+++.|...++++++.. +..+.++..|+..|.+.|++++|....++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34445678888999999999999999988753 33456789999999999999999999888764
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=92.15 E-value=0.61 Score=41.71 Aligned_cols=94 Identities=13% Similarity=-0.018 Sum_probs=63.7
Q ss_pred hhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcC---CHHHHHHHhhhCCCCC-----hhhHHHHHHHHHh
Q 047408 465 LPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCG---VLVLARSLFDMIPAKD-----LISWTIMIAGYGM 536 (830)
Q Consensus 465 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g---~~~~A~~~f~~m~~~d-----~~~~~~li~~~~~ 536 (830)
+........+..+++-+....+.|. ++..+...+.-++.+.+ +++++..+|+...+.+ ...+-.+..+|.+
T Consensus 5 l~~~l~~~~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~k 83 (152)
T 1pc2_A 5 LNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR 83 (152)
T ss_dssp CSCSCCHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HhCcCCHHHHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHH
Confidence 3444456677777777777777664 56666667777777777 5557777777654322 3345556667788
Q ss_pred cCChHHHHHHHHHHHHcCCCCChhH
Q 047408 537 HGFGCDAIATFNDMRQAGIEPDEVS 561 (830)
Q Consensus 537 ~g~~~~A~~l~~~m~~~g~~Pd~~t 561 (830)
.|++++|.+.++..++ +.|+..-
T Consensus 84 l~~Y~~A~~y~~~lL~--ieP~n~Q 106 (152)
T 1pc2_A 84 LKEYEKALKYVRGLLQ--TEPQNNQ 106 (152)
T ss_dssp TSCHHHHHHHHHHHHH--HCTTCHH
T ss_pred ccCHHHHHHHHHHHHh--cCCCCHH
Confidence 8888888888888887 6776543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.61 E-value=1.3 Score=40.72 Aligned_cols=97 Identities=10% Similarity=-0.019 Sum_probs=50.5
Q ss_pred ccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047408 571 HSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVA 650 (830)
Q Consensus 571 ~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 650 (830)
..|+++.|.++.+.+. +...|..|.+...+.|+++-|++.|++... +..|+-.|...|+.+.-..+.
T Consensus 17 ~lg~l~~A~e~a~~l~-------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 17 EYGNLDAALDEAKKLN-------DSITWERLIQEALAQGNASLAEMIYQTQHS------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HTTCHHHHHHHHHHHC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH
T ss_pred hcCCHHHHHHHHHHhC-------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC------HHHHHHHHHHhCCHHHHHHHH
Confidence 4566666666554431 344566666666666666666666666531 333444445555555544444
Q ss_pred HHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHH
Q 047408 651 EHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLRE 685 (830)
Q Consensus 651 ~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~ 685 (830)
+.+..- +-+..--..+.-.|+.+++.+++.
T Consensus 84 ~iA~~~-----g~~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 84 NIAQTR-----EDFGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHT-----TCHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHC-----ccHHHHHHHHHHcCCHHHHHHHHH
Confidence 433221 113333344555677777766653
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=90.20 E-value=1.2 Score=38.50 Aligned_cols=64 Identities=8% Similarity=0.059 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhccCCCC-cchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 625 PDATIWGSLLCGCRIHH---EVKLAEKVAEHVFELEPDN-TGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 625 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~l~p~~-~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
|+..+--.+.+++.+.. +..+|+.+++.+++.+|.. -..+..|+-.+.+.|++++|.+..+.+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34433333344443333 4456666677776666632 3445666667777777777777766555
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=89.49 E-value=3.1 Score=35.74 Aligned_cols=74 Identities=19% Similarity=0.079 Sum_probs=44.8
Q ss_pred CCcchHHHHHHHHHhcCCHHH---HHHHHHhC-CCC-C-CH-HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHH
Q 047408 593 PKLEHYACMVDLLSRTGNLSE---AYRFIEMM-PVA-P-DA-TIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYV 665 (830)
Q Consensus 593 p~~~~y~~lv~~l~r~g~~~e---A~~~~~~m-~~~-p-~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~ 665 (830)
|+..+--.+..+|.++.+..+ ++.++++. ... | +. ...-.|.-++.+.|+++.|++.++.+++.+|+|..+..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 344444444445555554444 45555543 112 3 11 22334555788999999999999999999999865444
Q ss_pred H
Q 047408 666 L 666 (830)
Q Consensus 666 ~ 666 (830)
+
T Consensus 113 L 113 (126)
T 1nzn_A 113 L 113 (126)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=89.26 E-value=0.061 Score=57.23 Aligned_cols=234 Identities=12% Similarity=0.118 Sum_probs=137.6
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhc
Q 047408 132 GVLGSKLVFMFVTCGDLKEGRRVFNKIDNGKVFIWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVV 211 (830)
Q Consensus 132 ~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 211 (830)
+.+|+.|..++.+.|.+.+|.+-|= ...|+..|..+|.+..+.|.+++-+..+.-.++. .-++..=+.|+-+|++.
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~ 129 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKT 129 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTS
T ss_pred ccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhh
Confidence 5677777777777777777765543 3345556777777777778777766666544433 22333334555555555
Q ss_pred CCCCCHHHHHHHHhhCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHH
Q 047408 212 GNSRRVKDAHKLFDELSDRDVVSWNCMISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHA 291 (830)
Q Consensus 212 g~~~~~~~A~~lf~~m~~~~~~~~n~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~ 291 (830)
+++.++++ -+..||+.--..+-+-|...|.++.|.-+|..+
T Consensus 130 ~rL~elEe------fl~~~N~A~iq~VGDrcf~e~lYeAAKilys~i--------------------------------- 170 (624)
T 3lvg_A 130 NRLAELEE------FINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------------------------------- 170 (624)
T ss_dssp CSSSTTTS------TTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGS---------------------------------
T ss_pred CcHHHHHH------HHcCCCcccHHHHHHHHHHccCHHHHHHHHHhC---------------------------------
Confidence 53222211 011234433344444444444444443333221
Q ss_pred HHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchH
Q 047408 292 FALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAI 371 (830)
Q Consensus 292 ~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 371 (830)
.-|..|...+.+.|++..|.+.-++ ..++.+|-.+-.+|...+++.-|.-.--.+. +.|| -.
T Consensus 171 -----------sN~akLAstLV~L~~yq~AVdaArK--Ans~ktWKeV~~ACvd~~EfrLAqicGLniI---vhad--eL 232 (624)
T 3lvg_A 171 -----------SNFGRLASTLVHLGEYQAAVDGARK--ANSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--EL 232 (624)
T ss_dssp -----------CCCTTTSSSSSSCSGGGSSTTTTTT--CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCSS--CC
T ss_pred -----------ccHHHHHHHHHHHHHHHHHHHHHHh--cCChhHHHHHHHHHhCchHHHHHHHhcchhc---ccHH--HH
Confidence 1123444556666776666533222 2578899999999999999988765544443 2333 23
Q ss_pred HHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhc
Q 047408 372 TSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQ 428 (830)
Q Consensus 372 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 428 (830)
..++..|-..|.+++-..+++.-+... ......++-|.-.|+|- ++++-++-++.
T Consensus 233 ~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlkl 287 (624)
T 3lvg_A 233 EELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLEL 287 (624)
T ss_dssp SGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHH
Confidence 456677889999999888887766321 34567889999999987 45555555443
|
| >2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A | Back alignment and structure |
|---|
Probab=86.17 E-value=49 Score=37.28 Aligned_cols=239 Identities=11% Similarity=0.061 Sum_probs=113.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHHhhcCCCchhhHHHHHHHHHh---
Q 047408 339 MIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAK--- 415 (830)
Q Consensus 339 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k--- 415 (830)
....+.-.|+++.|++++-.. ...|.+.+...|..+.-.+- ...++..- .+ .| ..-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~--~~-~~-~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTK--KP-KR-DIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccC--CC-cc-cccHHHHHHHHHHHhh
Confidence 345566678999999887644 34566666666665443332 22222110 01 11 2336678888875
Q ss_pred cCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhC--------C--CCCccccccchhhhcchhhHHHHHHHHHHHH
Q 047408 416 CGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQN--------F--EPDGVTMACILPACASLAALERGREIHGYIL 485 (830)
Q Consensus 416 ~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~--------~--~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 485 (830)
..++.+|.+.|--+..++...-..+ ..+...++.-+ | .+|..--..++.-...+=+++.-.+....
T Consensus 369 ~td~~~Al~Y~~li~l~~g~~~~~~--~~~~l~eLvletr~f~~LLG~i~~dG~r~~G~i~~~~~li~l~d~~~~~~~-- 444 (661)
T 2qx5_A 369 YSDPRVAVEYLVLITLNEGPTDVEL--CHEALRELVLETKEFTVLLGKIGRDGARIPGVIEERQPLLHVRDEKEFLHT-- 444 (661)
T ss_dssp TTCHHHHHHHHHGGGGSCCHHHHHH--HHHHHHHHHHHHCCHHHHHCEECTTSCEECCHHHHTCGGGTCSCHHHHHHH--
T ss_pred cCCHHHHHHHHHHHhccCCchHHHH--HHHHHHHHHHhcccHHHHcCCcCCCCCcCcchHHHhhcccccccHHHHHHH--
Confidence 4788899988777744431100011 11222222111 2 44544444444333221111100111111
Q ss_pred HhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC------CC--
Q 047408 486 RHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGI------EP-- 557 (830)
Q Consensus 486 ~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~------~P-- 557 (830)
+...........|++++|..+|+- .|+++.|++++.+.+.+-+ +|
T Consensus 445 ---------i~~~aA~~ae~~G~~~dAi~LY~L------------------a~~~d~vl~lln~~Ls~~l~~~~~~~~~~ 497 (661)
T 2qx5_A 445 ---------ITEQAARRADEDGRIYDSILLYQL------------------AEEYDIVITLVNSLLSDTLSASDLDQPLV 497 (661)
T ss_dssp ---------HHHHHHHHHHHTTCHHHHHHHHHH------------------TTCHHHHHHHHHHHHHHHHHHSCTTSCSS
T ss_pred ---------HHHHHHHHHHHCCCHHHHHHHHHH------------------hcCHHHHHHHHHHHHHHHhcccccccccc
Confidence 111123345677888888887765 3677777777777654211 00
Q ss_pred ChhHHHHHHHHHHccCCHHHHHHHHHHhHhh----cCCCC-CcchHHHHHHH-----HHhcCCHHHHHHHHHhCCCCCC
Q 047408 558 DEVSFISVLYACSHSGLVDEGWRFFNMMRYE----CNIEP-KLEHYACMVDL-----LSRTGNLSEAYRFIEMMPVAPD 626 (830)
Q Consensus 558 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~----~~~~p-~~~~y~~lv~~-----l~r~g~~~eA~~~~~~m~~~p~ 626 (830)
+... -...+.+..|.++.+..... ..+.+ +.+++..|.++ +.+.|++++|++.++++++-|.
T Consensus 498 ~~~~-------~~~~~l~~la~~i~~~y~~~~~~~~~~~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L~llPl 569 (661)
T 2qx5_A 498 GPDD-------NSETNPVLLARRMASIYFDNAGISRQIHVKNKEICMLLLNISSIRELYFNKQWQETLSQMELLDLLPF 569 (661)
T ss_dssp CSSC-------CTTTCHHHHHHHHHHHHTTCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTSCSCC
T ss_pred cccc-------cccccHHHHHHHHHHHHhcCchhhhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence 0000 00012233344443332211 01222 23455555443 3689999999999999976664
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=85.35 E-value=18 Score=31.37 Aligned_cols=111 Identities=10% Similarity=-0.044 Sum_probs=57.9
Q ss_pred hhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHH----------------------hcCCHHHHHHHhhhCCCCChhhHH
Q 047408 471 LAALERGREIHGYILRHGISADRNVANAIVDMYV----------------------KCGVLVLARSLFDMIPAKDLISWT 528 (830)
Q Consensus 471 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~----------------------k~g~~~~A~~~f~~m~~~d~~~~~ 528 (830)
.|.+++|.++.....+.. +..-+|..|--.. +||++......+-.+. .+..-.+
T Consensus 20 dG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n-~~se~vd 95 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINN-TLNEHVN 95 (172)
T ss_dssp TTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTT-CCCHHHH
T ss_pred hhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhc-chHHHHH
Confidence 477888888888877643 3333333332222 3344443333333322 1223334
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhH
Q 047408 529 IMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMR 586 (830)
Q Consensus 529 ~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 586 (830)
..+..+...|+-++-.+++..+.. +-+|+......+.+||.+.|+..++.+++.+..
T Consensus 96 ~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC 152 (172)
T 1wy6_A 96 KALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEAC 152 (172)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 445555566666666666655433 245555555666666666666666666665554
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=83.85 E-value=11 Score=30.48 Aligned_cols=87 Identities=16% Similarity=0.220 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047408 473 ALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQ 552 (830)
Q Consensus 473 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 552 (830)
..++|..|-+.+...+- ...+.-.-+..+...|++++|..+.+....||++.|-++-.+ +.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHh
Confidence 46777778777777664 333433345667889999999999999999999999888654 56888888888878877
Q ss_pred cCCCCChhHHHH
Q 047408 553 AGIEPDEVSFIS 564 (830)
Q Consensus 553 ~g~~Pd~~t~~~ 564 (830)
+| .|....|..
T Consensus 98 sg-~p~~q~Fa~ 108 (116)
T 2p58_C 98 SQ-DPRIQTFVN 108 (116)
T ss_dssp CC-CHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 65 555555543
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=83.30 E-value=8 Score=31.19 Aligned_cols=87 Identities=16% Similarity=0.176 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047408 473 ALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQ 552 (830)
Q Consensus 473 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 552 (830)
..++|..|-+.+...+- ...+.-.-+..+...|++++|..+.+....||++.|-++-. .+.|..+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 46777778777777664 33343334566788999999999999999999999988865 467888888888878877
Q ss_pred cCCCCChhHHHH
Q 047408 553 AGIEPDEVSFIS 564 (830)
Q Consensus 553 ~g~~Pd~~t~~~ 564 (830)
+| .|....|..
T Consensus 97 sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 97 SS-DPALADFAA 107 (115)
T ss_dssp CS-SHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 65 555555543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.30 E-value=16 Score=39.26 Aligned_cols=179 Identities=13% Similarity=0.098 Sum_probs=113.7
Q ss_pred CCHHHHHHHhhhCC-----CCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCChhH--HHHHHHHHHccCC
Q 047408 507 GVLVLARSLFDMIP-----AKD----LISWTIMIAGYGMHGFGCDAIATFNDMRQ-AGIEPDEVS--FISVLYACSHSGL 574 (830)
Q Consensus 507 g~~~~A~~~f~~m~-----~~d----~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~Pd~~t--~~~ll~a~~~~g~ 574 (830)
|+++.|.+.+-.+. ..| ......++..|...|+++...+.+.-+.. .|..+..++ ...++.-......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 67888887765443 223 23467788899999999999888876654 344343333 1112222222232
Q ss_pred HHH--HHHHHHHhHhhcCCCCC---c-----chHHHHHHHHHhcCCHHHHHHHHHhCCC-----CCC---HHHHHHHHHH
Q 047408 575 VDE--GWRFFNMMRYECNIEPK---L-----EHYACMVDLLSRTGNLSEAYRFIEMMPV-----APD---ATIWGSLLCG 636 (830)
Q Consensus 575 ~~~--a~~~~~~m~~~~~~~p~---~-----~~y~~lv~~l~r~g~~~eA~~~~~~m~~-----~p~---~~~~~~ll~~ 636 (830)
.+. -....+... .+... . ....-|.++|...|++.+|.+++.+.+. .+. ...+.--+..
T Consensus 110 ~d~~~~~~~i~~l~---~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl 186 (445)
T 4b4t_P 110 LDLNTRISVIETIR---VVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL 186 (445)
T ss_dssp THHHHHHHHHHCCS---SSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH---HHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 222 112222111 22221 1 1235688999999999999999998731 111 2466667788
Q ss_pred HHhcCCHHHHHHHHHHHhc---cCCCC----cchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 637 CRIHHEVKLAEKVAEHVFE---LEPDN----TGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 637 ~~~~g~~~~a~~~~~~~~~---l~p~~----~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
|...+|+..|..+++++.. -.|.+ ..+|.+++.++...++|.+|.+.+.+.-
T Consensus 187 ~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 187 SILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 9999999999999988632 12222 2467899999999999999988776654
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=82.21 E-value=2.5 Score=37.37 Aligned_cols=53 Identities=15% Similarity=-0.003 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCc
Q 047408 641 HEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLK 693 (830)
Q Consensus 641 g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~ 693 (830)
+|.++|+.+|+.++.+...-+..+...+.--.++|+.+.|.+++......+.+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 68888888888887775555667777888888899999999998888775544
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=80.48 E-value=2.6 Score=44.69 Aligned_cols=68 Identities=9% Similarity=0.037 Sum_probs=50.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh-----CCCcCCCc
Q 047408 630 WGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR-----RGLKKNPG 697 (830)
Q Consensus 630 ~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~-----~g~~~~~~ 697 (830)
...++.++...|+.+++...++.++..+|-+-..|..|...|.+.|+..+|.+.++..+. -|+.|.|.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 344556667778888888888888888888877888888888888888888877766543 47766553
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=80.24 E-value=54 Score=33.33 Aligned_cols=92 Identities=13% Similarity=0.116 Sum_probs=48.8
Q ss_pred HHHHHCCCCCChhhHHHHHHHHhcCCCh-----HHHHHHHHHHHHhC--CCCCchHHHHHHHHhhcCCChHHHHHHHhhc
Q 047408 256 KEMLNLGFNVDLATMVTVLSGCANCGAL-----MFGRAVHAFALKAC--FSKEISFNNTLLDMYSKCGDLDGAIRVFEKM 328 (830)
Q Consensus 256 ~~m~~~g~~pd~~t~~~ll~a~~~~~~~-----~~~~~l~~~~~~~g--~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m 328 (830)
+...+.++++|..+..-++..+.....- ........+-.+.| ..-|+.....+...|.+.+++.+|+.-|=-
T Consensus 83 evy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~il- 161 (336)
T 3lpz_A 83 DTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVL- 161 (336)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTT-
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh-
Confidence 3334445666665555555554443321 11223333444444 234667777778888888888888887742
Q ss_pred CCCC-eehHHHHHHHHHhcCC
Q 047408 329 GERS-VVSWTSMIAGYAREGV 348 (830)
Q Consensus 329 ~~~d-~~~~~~li~~~~~~g~ 348 (830)
...+ +..+..|+.-+.+.+.
T Consensus 162 g~~~s~~~~a~mL~ew~~~~~ 182 (336)
T 3lpz_A 162 GTKESPEVLARMEYEWYKQDE 182 (336)
T ss_dssp SCTTHHHHHHHHHHHHHHTSC
T ss_pred cCCchHHHHHHHHHHHHHhcC
Confidence 2222 2455445444444433
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=80.01 E-value=82 Score=35.27 Aligned_cols=135 Identities=10% Similarity=0.015 Sum_probs=81.0
Q ss_pred HHhcCChHHHHHHHHHhhcCCCChh-hHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCccchHHHHHHHHHhCCChHHH
Q 047408 73 FCEVGNLEKAMEVLYSSEKSKIDTK-TYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEG 151 (830)
Q Consensus 73 ~~~~g~~~~A~~~~~~m~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A 151 (830)
..+.|++..+..+...+....+.|. .|..+.... ...... ++-..+.+..-.|-...+-+..+..+.+.++....
T Consensus 16 a~~~~~~~~~~~l~~~l~~~pL~~yl~y~~l~~~l-~~~~~~---ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~ 91 (618)
T 1qsa_A 16 AWDNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDL-MNQPAV---TVTNFVRANPTLPPARTLQSRFVNELARREDWRGL 91 (618)
T ss_dssp HHHTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTG-GGCCHH---HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHhhcCCCcHHHHHHHHHHhCc-ccCCHH---HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHH
Confidence 4556888888777766644333332 444443332 122333 44444544321121123445566677788899888
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCC
Q 047408 152 RRVFNKIDNGKVFIWNLLMHEYSKTGNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGN 213 (830)
Q Consensus 152 ~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 213 (830)
...+.. +..+...--....+....|+..+|....+.+-..| ...+.....++..+...|.
T Consensus 92 l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 92 LAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGK 151 (618)
T ss_dssp HHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTC
T ss_pred HHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCC
Confidence 887776 44455445556677888899888888777776665 3455667777887776664
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 830 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-04 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (95), Expect = 3e-04
Identities = 37/391 (9%), Positives = 99/391 (25%), Gaps = 35/391 (8%)
Query: 312 YSKCGDLDGAIRVFEKMGER---SVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDV 368
+ GD + A R ++ + + + + + + D + ++ P
Sbjct: 9 EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK--QNPL- 65
Query: 369 YAITSILHACACDGLLEIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQ 428
A ++ + + Y ++ + +
Sbjct: 66 LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125
Query: 429 MPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHG 488
++ + L + L E + + A
Sbjct: 126 SALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEI 185
Query: 489 ISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFN 548
A + A+ + L ++ + A+A +
Sbjct: 186 WLAIHHFEKAV------------------TLDPNFLDAYINLGNVLKEARIFDRAVAAYL 227
Query: 549 DMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKL-EHYACMVDLLSR 607
V ++ GL+D + ++P + Y + + L
Sbjct: 228 RALSLSPNHAVV-HGNLACVYYEQGLIDLAIDTYRRA---IELQPHFPDAYCNLANALKE 283
Query: 608 TGNLSEAYRFIEMMPVAPDATIWGSLLCG--CRIHHEVKLAEKVAEHVFELEPDNTGYYV 665
G+++EA R ++ A ++ E+ P+ +
Sbjct: 284 KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS 343
Query: 666 LLANVYAEAEKWEEVKKLREKISRRGLKKNP 696
LA+V + K +E ++ ++ +P
Sbjct: 344 NLASVLQQQGKLQEALMHYKEA----IRISP 370
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 830 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.86 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.84 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.46 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.33 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.82 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.81 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.77 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.75 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.75 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.72 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.71 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.7 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.62 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.56 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.46 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.44 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.42 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.4 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.36 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.33 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.25 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.21 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.21 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.2 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.19 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.14 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.13 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.06 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.06 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.04 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.03 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 97.96 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.93 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.87 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.84 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.8 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.71 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.68 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.57 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.5 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.46 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.45 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.37 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.23 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.21 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.16 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.12 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.03 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.92 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.84 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.83 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.69 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.53 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 96.3 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.92 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 90.71 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 88.62 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 85.17 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 84.43 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 83.01 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1.9e-19 Score=193.43 Aligned_cols=374 Identities=13% Similarity=0.092 Sum_probs=263.9
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCCh
Q 047408 239 ISGYIANGVAEKGLEVFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDL 318 (830)
Q Consensus 239 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~ 318 (830)
...+.+.|++++|++.|+++.+. .|+ ++.++..+...|.+.|++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~--~p~----------------------------------~~~~~~~la~~~~~~~~~ 49 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQ--EPD----------------------------------NTGVLLLLSSIHFQCRRL 49 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTT----------------------------------CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCC----------------------------------CHHHHHHHHHHHHHcCCH
Confidence 34566778888888888877654 232 233345555666666667
Q ss_pred HHHHHHHhhcCC--C-CeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcchhhhhHHHHHH
Q 047408 319 DGAIRVFEKMGE--R-SVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLEIGKDVHDYIK 395 (830)
Q Consensus 319 ~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 395 (830)
++|...|++..+ | +..+|..+...|.+.|++++|+..+........ .+............................
T Consensus 50 ~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (388)
T d1w3ba_ 50 DRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSAL 128 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcccccccccccccccccc-cccccccccccccccccccccccccccccc
Confidence 777666666532 2 445677777777777777777777777766432 122222222223333333444333333333
Q ss_pred hhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHH
Q 047408 396 ENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALE 475 (830)
Q Consensus 396 ~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~ 475 (830)
... .............+...+....+...+......+ +.+...+..+...+...+..+
T Consensus 129 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~l~~~~~~~~~~~ 186 (388)
T d1w3ba_ 129 QYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ---------------------PNFAVAWSNLGCVFNAQGEIW 186 (388)
T ss_dssp HHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC---------------------TTCHHHHHHHHHHHHTTTCHH
T ss_pred ccc-cccccccccccccccccchhhhhHHHHHHhhccC---------------------cchhHHHHhhcccccccCcHH
Confidence 332 2233334444455555566555555544432211 122233444455566777888
Q ss_pred HHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047408 476 RGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIATFNDMRQ 552 (830)
Q Consensus 476 ~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 552 (830)
.|...+..+++.. +.+...+..+...|...|++++|...|++.. ..+...|..+...|...|++++|++.|++..+
T Consensus 187 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 265 (388)
T d1w3ba_ 187 LAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE 265 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888777754 4467788889999999999999999998764 45667888899999999999999999999988
Q ss_pred cCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHH
Q 047408 553 AGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPD-ATI 629 (830)
Q Consensus 553 ~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~ 629 (830)
+.|+.. ++..+..++...|++++|.+.++..... .+.+...+..+..++.+.|++++|++.+++. .+.|+ ..+
T Consensus 266 --~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 341 (388)
T d1w3ba_ 266 --LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA 341 (388)
T ss_dssp --TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHH
T ss_pred --hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 567654 6888889999999999999999988643 2345678888999999999999999999985 66775 678
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcC
Q 047408 630 WGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEK 676 (830)
Q Consensus 630 ~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 676 (830)
|..+...+...|++++|+..++++++++|+++.+|..|+++|.+.|+
T Consensus 342 ~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 342 HSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999998875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=9.4e-19 Score=187.85 Aligned_cols=371 Identities=14% Similarity=0.048 Sum_probs=260.0
Q ss_pred HHHhhcCCChHHHHHHHhhcCC--C-CeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-cchHHHHHHHhhccCcc
Q 047408 309 LDMYSKCGDLDGAIRVFEKMGE--R-SVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPD-VYAITSILHACACDGLL 384 (830)
Q Consensus 309 i~~y~k~g~~~~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~ 384 (830)
...+.+.|++++|.+.|+++.+ | +...|..+...|.+.|++++|+..|++..+. .|+ ..++..+...+...|++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--NPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHhhhhccc
Confidence 3445566666666666666532 2 3455666666666666666666666666553 232 33445555555555666
Q ss_pred hhhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccc
Q 047408 385 EIGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACI 464 (830)
Q Consensus 385 ~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~l 464 (830)
++|...+....+... .+..........+...+....+....... ......+.......
T Consensus 84 ~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~ 141 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSA---------------------LQYNPDLYCVRSDL 141 (388)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHH---------------------HHHCTTCTHHHHHH
T ss_pred ccccccccccccccc-ccccccccccccccccccccccccccccc---------------------cccccccccccccc
Confidence 666665555555442 22222222333333333333332222211 11112222233333
Q ss_pred hhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChH
Q 047408 465 LPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGC 541 (830)
Q Consensus 465 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~ 541 (830)
.......+....+........... +.+...+..+...+...|+.++|...+++.. ..+...|..+...|...|+++
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 220 (388)
T d1w3ba_ 142 GNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFD 220 (388)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTT
T ss_pred cccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHH
Confidence 334445556666666666666544 4567788889999999999999999998654 446778999999999999999
Q ss_pred HHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHh
Q 047408 542 DAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEM 620 (830)
Q Consensus 542 ~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~ 620 (830)
+|+..|++....+ ..+...+..+...+.+.|++++|...|+...+ +.|+ ...+..+..+|.+.|++++|++.++.
T Consensus 221 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 296 (388)
T d1w3ba_ 221 RAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNT 296 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 9999999998853 33445677788899999999999999998873 4564 67888999999999999999999988
Q ss_pred C--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCcCCCce
Q 047408 621 M--PVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGC 698 (830)
Q Consensus 621 m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~~~ 698 (830)
. ..+.+...|..+...+...|++++|+..++++++++|+++..+..++.+|...|++++|.+.+++..+
T Consensus 297 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------- 367 (388)
T d1w3ba_ 297 ALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--------- 367 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT---------
T ss_pred hhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------
Confidence 6 23446788999999999999999999999999999999999999999999999999999999988764
Q ss_pred eEEEECCEEEEEEeCCcCCCChhHHHHHHHHHHHHH
Q 047408 699 SWIEIKGKVNIFVAGGSSHPHAKKIESLLKRLRLEM 734 (830)
Q Consensus 699 swi~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~~ 734 (830)
.+|+..+++..|..+..+|
T Consensus 368 -----------------l~P~~~~a~~~lg~~~~~~ 386 (388)
T d1w3ba_ 368 -----------------ISPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp -----------------TCTTCHHHHHHHHHHHHHT
T ss_pred -----------------hCCCCHHHHHHHHHHHHHc
Confidence 3566677777776666544
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=1.3e-12 Score=136.20 Aligned_cols=222 Identities=11% Similarity=0.020 Sum_probs=184.5
Q ss_pred hhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChH
Q 047408 465 LPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGC 541 (830)
Q Consensus 465 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~ 541 (830)
...+...|++++|...+..+++.. +.+...+..+...|.+.|++++|...|++.. ..+...|..+...|...|+++
T Consensus 26 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~ 104 (323)
T d1fcha_ 26 GLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQR 104 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccccccc
Confidence 445678899999999999999865 4568889999999999999999999998754 446789999999999999999
Q ss_pred HHHHHHHHHHHcCCCCChhHH----------------HHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHH
Q 047408 542 DAIATFNDMRQAGIEPDEVSF----------------ISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLL 605 (830)
Q Consensus 542 ~A~~l~~~m~~~g~~Pd~~t~----------------~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l 605 (830)
+|++.+++... +.|+...+ ...+..+...+..+++.+.|........-.++...+..+...+
T Consensus 105 ~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~ 182 (323)
T d1fcha_ 105 QACEILRDWLR--YTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF 182 (323)
T ss_dssp HHHHHHHHHHH--TSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHH
T ss_pred ccccchhhHHH--hccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 99999999987 44543221 1112233445677888888888764433334567788899999
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHH
Q 047408 606 SRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKL 683 (830)
Q Consensus 606 ~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~ 683 (830)
.+.|++++|++.+++. ...| +..+|..+...+...|++++|...++++++++|+++.++..|+.+|...|++++|.+.
T Consensus 183 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~ 262 (323)
T d1fcha_ 183 NLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEH 262 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999986 4455 4788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 047408 684 REKISR 689 (830)
Q Consensus 684 ~~~m~~ 689 (830)
+++..+
T Consensus 263 ~~~al~ 268 (323)
T d1fcha_ 263 FLEALN 268 (323)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988765
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=7.5e-12 Score=130.18 Aligned_cols=248 Identities=10% Similarity=-0.040 Sum_probs=189.9
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHHHHHHhC
Q 047408 409 LMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHGYILRHG 488 (830)
Q Consensus 409 Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g 488 (830)
....|.+.|++++|...|++..+.++ -+..++..+..++...|+++.|...+..+++..
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~P---------------------~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~ 83 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQDP---------------------KHMEAWQYLGTTQAENEQELLAISALRRCLELK 83 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCT---------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC---------------------CCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc
Confidence 45668899999999999998766542 334567777788889999999999999999875
Q ss_pred CCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCC--CC----------------hhhHHHHHHHHHhcCChHHHHHHHHHH
Q 047408 489 ISADRNVANAIVDMYVKCGVLVLARSLFDMIPA--KD----------------LISWTIMIAGYGMHGFGCDAIATFNDM 550 (830)
Q Consensus 489 ~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d----------------~~~~~~li~~~~~~g~~~~A~~l~~~m 550 (830)
+.+...+..+...|.+.|++++|.+.++.... |+ .......+..+...+...+|.+.|.+.
T Consensus 84 -p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 162 (323)
T d1fcha_ 84 -PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAA 162 (323)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred -cccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHH
Confidence 45678889999999999999999999987531 11 011112233445567788999999998
Q ss_pred HHcCC-CCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-C
Q 047408 551 RQAGI-EPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-D 626 (830)
Q Consensus 551 ~~~g~-~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~ 626 (830)
.+... .++...+..+...+...|++++|..+|+.... ..|+ ...|..+...|.+.|++++|.+.+++. .+.| +
T Consensus 163 l~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 239 (323)
T d1fcha_ 163 VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS---VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY 239 (323)
T ss_dssp HHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccccccchhhHHHHHHHHHHhhhhcccccccc---cccccccchhhhhhcccccccchhHHHHHHHHHHHhhcc
Confidence 87321 23345677788889999999999999999874 3454 678889999999999999999999886 4566 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchH-----------HHHHHHHhhhcCHHHHH
Q 047408 627 ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYY-----------VLLANVYAEAEKWEEVK 681 (830)
Q Consensus 627 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~-----------~~l~~~y~~~g~~~~A~ 681 (830)
..+|..+..+|...|++++|+..++++++++|++...+ ..+...+...|+++.+.
T Consensus 240 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 240 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 67899999999999999999999999999999876643 34555666666665443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=9.4e-09 Score=105.65 Aligned_cols=191 Identities=8% Similarity=0.067 Sum_probs=142.0
Q ss_pred hhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCChh-HHHHHHH
Q 047408 493 RNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHG-FGCDAIATFNDMRQAGIEPDEV-SFISVLY 567 (830)
Q Consensus 493 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~ 567 (830)
..+++.+...|.+.+..++|.++++++. ..+...|+.....+...| +.++|++.+++..+ +.|+.. +|..+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~--~~p~~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE--EQPKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHH--HHHhhhhHHHHHhH
Confidence 3455556667778888888888888764 346668888888877766 47888888888887 466655 6777778
Q ss_pred HHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC--
Q 047408 568 ACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHE-- 642 (830)
Q Consensus 568 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~-- 642 (830)
.+.+.|++++|+++++.+. .+.|+ ...|..+..++.+.|++++|++.++++ .+.| +...|+.+...+...+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal---~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~ 197 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADIL---NQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYN 197 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHH---HHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHhhccHHHHHHHHhhhh---hhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccc
Confidence 8888888888888888887 34564 677888888888888888888888887 4555 56778776665554443
Q ss_pred ----HHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 643 ----VKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 643 ----~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
+++|...++++++++|++...+..++.++...| .+++.+.++...+
T Consensus 198 ~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 198 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLD 247 (315)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHH
T ss_pred hhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHH
Confidence 678888888888889988888888888877655 4666666655543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.81 E-value=1.1e-07 Score=98.43 Aligned_cols=263 Identities=12% Similarity=-0.031 Sum_probs=188.0
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCC---ccccccchhhhcchhhHHHHHHHHHHH
Q 047408 408 ALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPD---GVTMACILPACASLAALERGREIHGYI 484 (830)
Q Consensus 408 ~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd---~~t~~~ll~a~~~~~~~~~a~~i~~~~ 484 (830)
.....+...|++++|.+.|++......- .++ ...+..+..++...|++++|...+..+
T Consensus 17 lrA~~~~~~g~~~~A~~~~~~aL~~~~~-------------------~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 77 (366)
T d1hz4a_ 17 LRAQVAINDGNPDEAERLAKLALEELPP-------------------GWFYSRIVATSVLGEVLHCKGELTRSLALMQQT 77 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCT-------------------TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcC-------------------CCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3456678899999999998865332110 000 123445566778889999999999988
Q ss_pred HHhCC--CC---chhHHhHHHHHHHhcCCHHHHHHHhhhCC-------CCC----hhhHHHHHHHHHhcCChHHHHHHHH
Q 047408 485 LRHGI--SA---DRNVANAIVDMYVKCGVLVLARSLFDMIP-------AKD----LISWTIMIAGYGMHGFGCDAIATFN 548 (830)
Q Consensus 485 ~~~g~--~~---~~~~~~~Li~~y~k~g~~~~A~~~f~~m~-------~~d----~~~~~~li~~~~~~g~~~~A~~l~~ 548 (830)
.+... .. ....+..+...|...|++..|...+.... .+. ...+..+...+...|++++|...+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~ 157 (366)
T d1hz4a_ 78 EQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR 157 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHH
Confidence 76321 11 23455667788999999999988887542 111 1355667788899999999999999
Q ss_pred HHHHcCCCCC----hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-----cchHHHHHHHHHhcCCHHHHHHHHH
Q 047408 549 DMRQAGIEPD----EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-----LEHYACMVDLLSRTGNLSEAYRFIE 619 (830)
Q Consensus 549 ~m~~~g~~Pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~y~~lv~~l~r~g~~~eA~~~~~ 619 (830)
+........+ ..++......+...|...++...+........-... ...+..+...+...|+.++|.+.++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 237 (366)
T d1hz4a_ 158 SGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLR 237 (366)
T ss_dssp HHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 9887432222 224555556677889999999888776543322222 2345667778889999999999998
Q ss_pred hC-CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHh------ccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHH
Q 047408 620 MM-PVAP-----DATIWGSLLCGCRIHHEVKLAEKVAEHVF------ELEPDNTGYYVLLANVYAEAEKWEEVKKLREKI 687 (830)
Q Consensus 620 ~m-~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~------~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m 687 (830)
+. ...| ....+..+...+...|++++|...+++++ +..|+....+..++.+|...|++++|.+.+++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~A 317 (366)
T d1hz4a_ 238 HTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 317 (366)
T ss_dssp HSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 86 2222 23566778888999999999999999887 345666778999999999999999999998876
Q ss_pred Hh
Q 047408 688 SR 689 (830)
Q Consensus 688 ~~ 689 (830)
.+
T Consensus 318 l~ 319 (366)
T d1hz4a_ 318 LK 319 (366)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=2e-08 Score=103.16 Aligned_cols=202 Identities=11% Similarity=0.126 Sum_probs=162.7
Q ss_pred hhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcC-CHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChH
Q 047408 466 PACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCG-VLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGC 541 (830)
Q Consensus 466 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g-~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~ 541 (830)
..+.+.+..++|.+++..+++.. |.+..+|+.....+.+.| ++++|...++... ..+..+|+.+...+...|+++
T Consensus 51 ~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~ 129 (315)
T d2h6fa1 51 AVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPS 129 (315)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCT
T ss_pred HHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHH
Confidence 34556678899999999999975 567788899999998877 4999999998764 567889999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCh-hHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCC------HHH
Q 047408 542 DAIATFNDMRQAGIEPDE-VSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGN------LSE 613 (830)
Q Consensus 542 ~A~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~------~~e 613 (830)
+|++.|+++.+ +.|+. ..|..+...+.+.|++++|++.|+.+. .+.|+ ...|+.+..++.+.|. +++
T Consensus 130 eAl~~~~kal~--~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al---~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ 204 (315)
T d2h6fa1 130 QELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLL---KEDVRNNSVWNQRYFVISNTTGYNDRAVLER 204 (315)
T ss_dssp THHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH---HHCTTCHHHHHHHHHHHHHTTCSCSHHHHHH
T ss_pred HHHHHHhhhhh--hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHH---HHCCccHHHHHHHHHHHHHccccchhhhhHH
Confidence 99999999998 56765 478889999999999999999999987 45664 5677777777777665 678
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcc--hHHHHHHHHhhh
Q 047408 614 AYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTG--YYVLLANVYAEA 674 (830)
Q Consensus 614 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~--~~~~l~~~y~~~ 674 (830)
|++.+++. ...| +...|..+...+.. ...+++...+++++++.|+... .+..++.+|...
T Consensus 205 ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~ 268 (315)
T d2h6fa1 205 EVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDM 268 (315)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHH
Confidence 88888775 4556 57889888776654 4468888999999998887554 445677777654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.75 E-value=1.6e-07 Score=95.87 Aligned_cols=187 Identities=12% Similarity=0.063 Sum_probs=149.1
Q ss_pred hhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCC---CC-hhhHHHHHHHHHhcCChHHHHHH
Q 047408 471 LAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPA---KD-LISWTIMIAGYGMHGFGCDAIAT 546 (830)
Q Consensus 471 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d-~~~~~~li~~~~~~g~~~~A~~l 546 (830)
.+..+.+..++...++...+.+...+...+..+.+.|+++.|+.+|+++.. .+ ...|...+..+.+.|+.++|.++
T Consensus 77 ~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i 156 (308)
T d2onda1 77 KLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI 156 (308)
T ss_dssp HHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHH
Confidence 456788999999998876667788889999999999999999999997642 23 34799999999999999999999
Q ss_pred HHHHHHcCCCCChh-HHHHHHH-HHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC---
Q 047408 547 FNDMRQAGIEPDEV-SFISVLY-ACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM--- 621 (830)
Q Consensus 547 ~~~m~~~g~~Pd~~-t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m--- 621 (830)
|+++++. .|+.. .|..... -....|+.+.|..+|+.+...+ ..+...+...++.+.+.|+.++|..+|++.
T Consensus 157 ~~~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~--p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~ 232 (308)
T d2onda1 157 FKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHh--CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 9999875 34333 3333332 2345689999999999988643 224677889999999999999999999885
Q ss_pred -CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCc
Q 047408 622 -PVAPD--ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNT 661 (830)
Q Consensus 622 -~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~ 661 (830)
|..|+ ..+|...+.--..+|+.+.+..+.+++.++-|+..
T Consensus 233 ~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~ 275 (308)
T d2onda1 233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence 44553 46899999888999999999999999998888764
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.75 E-value=2.4e-08 Score=99.27 Aligned_cols=212 Identities=10% Similarity=-0.031 Sum_probs=140.9
Q ss_pred hhHHHHHHHHHHHHHhCCCC---chhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHhcCChHHHHH
Q 047408 472 AALERGREIHGYILRHGISA---DRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGMHGFGCDAIA 545 (830)
Q Consensus 472 ~~~~~a~~i~~~~~~~g~~~---~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~ 545 (830)
...+.+..-+..++...-.. ...++..+...|.+.|++++|...|++.. ..++.+|+.+...|.+.|++++|++
T Consensus 13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhh
Confidence 34445555555555432211 23466777889999999999999998764 4577899999999999999999999
Q ss_pred HHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 047408 546 TFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-P 622 (830)
Q Consensus 546 l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~ 622 (830)
.|++..+ +.|+.. ++..+..++...|++++|.+.|+...+. .|+ ......+...+.+.+..+.+..+.... .
T Consensus 93 ~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (259)
T d1xnfa_ 93 AFDSVLE--LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 167 (259)
T ss_dssp HHHHHHH--HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred hhhHHHH--HHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh---ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 9999998 567654 6778888889999999999999887743 453 333334444555556555554444333 1
Q ss_pred CCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 623 VAPDATIWGSLLCGCR----IHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 623 ~~p~~~~~~~ll~~~~----~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
..++...|+. +..+. ..+..+.+...+.......|+....|..|+.+|...|++++|.+.+++..+
T Consensus 168 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 237 (259)
T d1xnfa_ 168 SDKEQWGWNI-VEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 237 (259)
T ss_dssp SCCCSTHHHH-HHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cchhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1222222221 11221 122334444444444556677777888899999999999999999988764
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.72 E-value=7.6e-09 Score=107.56 Aligned_cols=194 Identities=10% Similarity=-0.051 Sum_probs=138.3
Q ss_pred hhHHHHHHHHHHHHHhCCCCchhHH-hHHHHHHHhcCCHHHHHHHhhhCCC---CChhhHHHHHHHHHhcCChHHHHHHH
Q 047408 472 AALERGREIHGYILRHGISADRNVA-NAIVDMYVKCGVLVLARSLFDMIPA---KDLISWTIMIAGYGMHGFGCDAIATF 547 (830)
Q Consensus 472 ~~~~~a~~i~~~~~~~g~~~~~~~~-~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~ 547 (830)
++.+++...+..+++... .+...+ ..+...|...|..++|...++.... .+..+|+.+...+.+.|++++|...+
T Consensus 123 ~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~ 201 (334)
T d1dcea1 123 PNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (334)
T ss_dssp CCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred ccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 457788888888877642 334443 3445677778888888888887653 35677888888888888888777666
Q ss_pred HHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 047408 548 NDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPD 626 (830)
Q Consensus 548 ~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~ 626 (830)
++... +.|+.. .+...+...+..+++...+...... -.+....+..++..+...|+.++|.+.+.+. +..|+
T Consensus 202 ~~~~~--~~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 274 (334)
T d1dcea1 202 RLPEN--VLLKEL---ELVQNAFFTDPNDQSAWFYHRWLLG--RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKW 274 (334)
T ss_dssp SSCHH--HHHHHH---HHHHHHHHHCSSCSHHHHHHHHHHS--CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHhHH--hHHHHH---HHHHHHHHhcchhHHHHHHHHHHHh--CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch
Confidence 65544 233332 2233344556666777777665532 2234556667777888889999999888775 66664
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhh
Q 047408 627 -ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAE 673 (830)
Q Consensus 627 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 673 (830)
..+|..+...+...|+.++|...++++++++|+++.+|..|+..+.-
T Consensus 275 ~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 275 CLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLL 322 (334)
T ss_dssp HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHhH
Confidence 57888888889999999999999999999999988888888777763
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.71 E-value=7.6e-07 Score=91.91 Aligned_cols=188 Identities=10% Similarity=-0.039 Sum_probs=116.5
Q ss_pred HHhHHHHHHHhcCCHHHHHHHhhhCC----C----CChhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCh--h
Q 047408 495 VANAIVDMYVKCGVLVLARSLFDMIP----A----KDLISWTIMIAGYGMHGFGCDAIATFNDMRQA----GIEPDE--V 560 (830)
Q Consensus 495 ~~~~Li~~y~k~g~~~~A~~~f~~m~----~----~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~Pd~--~ 560 (830)
.+..+...|...|+++.|...+.... . ....++..+...+...|...++...+.+.... +..+.. .
T Consensus 135 ~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~ 214 (366)
T d1hz4a_ 135 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN 214 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred HHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHH
Confidence 34455666777777777777766542 1 12234555566677778888888777766542 111111 1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC--cchHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHH
Q 047408 561 SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK--LEHYACMVDLLSRTGNLSEAYRFIEMM-------PVAPD-ATIW 630 (830)
Q Consensus 561 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~y~~lv~~l~r~g~~~eA~~~~~~m-------~~~p~-~~~~ 630 (830)
.+..+...+...|+.++|...+........-.+. ...+..+...|...|++++|.+.+++. +..|+ ..+|
T Consensus 215 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 294 (366)
T d1hz4a_ 215 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 294 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHH
Confidence 2444455677888888888888776422111111 234456778888889999888888765 34443 3567
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhccCCCCc---------chHHHHHHHHhhhcCHHHHHH
Q 047408 631 GSLLCGCRIHHEVKLAEKVAEHVFELEPDNT---------GYYVLLANVYAEAEKWEEVKK 682 (830)
Q Consensus 631 ~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~---------~~~~~l~~~y~~~g~~~~A~~ 682 (830)
..+...+...|+.++|...+++++++.+... ..+..+...+...|+.+++.+
T Consensus 295 ~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 295 LLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 7788888999999999999999887654321 112223334555566666654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.70 E-value=1e-06 Score=89.73 Aligned_cols=209 Identities=9% Similarity=-0.026 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHHhCCCCchhHHhHHHHHH--------------HhcCCHHHHHHHhhhC----CCCChhhHHHHHHHHHh
Q 047408 475 ERGREIHGYILRHGISADRNVANAIVDMY--------------VKCGVLVLARSLFDMI----PAKDLISWTIMIAGYGM 536 (830)
Q Consensus 475 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~y--------------~k~g~~~~A~~~f~~m----~~~d~~~~~~li~~~~~ 536 (830)
+.+..++++++..- +.++.+|-.-+..+ ...+..++|..+|++. ...+...|...+..+..
T Consensus 33 ~Rv~~vyerAl~~~-~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~ 111 (308)
T d2onda1 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 44555666665542 33444444333322 2334568888998864 34466789999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCC--hhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHH-HhcCCHH
Q 047408 537 HGFGCDAIATFNDMRQAGIEPD--EVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLL-SRTGNLS 612 (830)
Q Consensus 537 ~g~~~~A~~l~~~m~~~g~~Pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l-~r~g~~~ 612 (830)
.|+.++|..+|+++++ ..|. ...+...+..+.+.|.+++|+++|+.+.. ..|+ ...|...+... ...|+.+
T Consensus 112 ~~~~~~a~~i~~~~l~--~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~---~~~~~~~~~~~~a~~e~~~~~~~~ 186 (308)
T d2onda1 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT---STTCCTHHHHHHHHHHHHTSCCHH
T ss_pred cccHHHHHHHHHHHHH--HhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHhccCHH
Confidence 9999999999999987 4554 33688889999999999999999999873 3443 44455545443 4468999
Q ss_pred HHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcc----hHHHHHHHHhhhcCHHHHHHHHHH
Q 047408 613 EAYRFIEMM-P-VAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTG----YYVLLANVYAEAEKWEEVKKLREK 686 (830)
Q Consensus 613 eA~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~----~~~~l~~~y~~~g~~~~A~~~~~~ 686 (830)
.|..+|+.+ . .+.+...|...+..+...|+++.|+.++++++...|.++. .+..........|+.+.+.++.+.
T Consensus 187 ~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r 266 (308)
T d2onda1 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999987 2 2345789999999999999999999999999998776554 566667777788999999999988
Q ss_pred HHh
Q 047408 687 ISR 689 (830)
Q Consensus 687 m~~ 689 (830)
+.+
T Consensus 267 ~~~ 269 (308)
T d2onda1 267 RFT 269 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.62 E-value=1e-06 Score=87.02 Aligned_cols=198 Identities=10% Similarity=-0.114 Sum_probs=139.3
Q ss_pred ccccchhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC---CCChhhHHHHHHHHHh
Q 047408 460 TMACILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP---AKDLISWTIMIAGYGM 536 (830)
Q Consensus 460 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~ 536 (830)
++..+..++...|++++|.+.+..+++.. +.++.+++.+...|.+.|++++|...|++.. ..+..+|..+...|..
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 117 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 117 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH
Confidence 45555677888999999999999999875 5678899999999999999999999999875 3456789999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCC----H
Q 047408 537 HGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGN----L 611 (830)
Q Consensus 537 ~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~----~ 611 (830)
.|++++|++.|++..+. .|+.. ....+..+..+.+..+....+...... ..+....++. +..+..... .
T Consensus 118 ~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~ 191 (259)
T d1xnfa_ 118 GGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---SDKEQWGWNI-VEFYLGNISEQTLM 191 (259)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---SCCCSTHHHH-HHHHTTSSCHHHHH
T ss_pred HhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---cchhhhhhhH-HHHHHHHHHHHHHH
Confidence 99999999999999884 55543 333334445555655555555554432 2333333332 333322222 2
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchH
Q 047408 612 SEAYRFIEMM-PVAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYY 664 (830)
Q Consensus 612 ~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~ 664 (830)
+++...+... ...|+ ..+|..|...+...|++++|...+++++..+|++...|
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 246 (259)
T d1xnfa_ 192 ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 246 (259)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred HHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 2222222111 12233 35677888889999999999999999999999975444
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=1.9e-07 Score=79.89 Aligned_cols=89 Identities=16% Similarity=0.168 Sum_probs=72.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHH
Q 047408 601 MVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWE 678 (830)
Q Consensus 601 lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 678 (830)
-.+.+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..++.+|...|+++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 355677788888888888776 4445 56778888888888888888888888888888888888888888888889998
Q ss_pred HHHHHHHHHHh
Q 047408 679 EVKKLREKISR 689 (830)
Q Consensus 679 ~A~~~~~~m~~ 689 (830)
+|.+.++...+
T Consensus 89 ~A~~~~~~a~~ 99 (117)
T d1elwa_ 89 EAKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 88888887764
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.46 E-value=7.2e-08 Score=99.93 Aligned_cols=261 Identities=8% Similarity=-0.097 Sum_probs=181.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCCch---hHHHHHHHHHHHHHHHhCCCCCccccccchhhhcchhhHHHHHHHHH
Q 047408 406 SNALMDMYAKCGSMADAESVFNQMPVKDIV---SWNTMIGALDLFVAMLQNFEPDGVTMACILPACASLAALERGREIHG 482 (830)
Q Consensus 406 ~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~---~~n~~i~al~~f~~m~~~~~pd~~t~~~ll~a~~~~~~~~~a~~i~~ 482 (830)
...++....+.+..++|..+++.....|+- .|+..- .++.. +..........+.++++..++.
T Consensus 32 ~~~~~~~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~---~~l~~-----------l~~~~~~~~~~~~~~~al~~~~ 97 (334)
T d1dcea1 32 TQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRR---EVLQH-----------LETEKSPEESAALVKAELGFLE 97 (334)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHH---HHHHH-----------HHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHCCCcHHHHHHHH---HHHHH-----------HhhhcchHHHHHHHHHHHHHHH
Confidence 344444444555568999998877544321 122111 00000 1122233456677889999999
Q ss_pred HHHHhCCCCchhHHhHHHHHHHhcC--CHHHHHHHhhhCC---CCChhhHHHHH-HHHHhcCChHHHHHHHHHHHHcCCC
Q 047408 483 YILRHGISADRNVANAIVDMYVKCG--VLVLARSLFDMIP---AKDLISWTIMI-AGYGMHGFGCDAIATFNDMRQAGIE 556 (830)
Q Consensus 483 ~~~~~g~~~~~~~~~~Li~~y~k~g--~~~~A~~~f~~m~---~~d~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~g~~ 556 (830)
.+++.. +.+...+..+...+...+ +.++|...++++. .++...|...+ ..+...|.+++|++.+++..+ ..
T Consensus 98 ~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~--~~ 174 (334)
T d1dcea1 98 SCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RN 174 (334)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT--TT
T ss_pred HHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHH--cC
Confidence 988865 556777777777777766 4889999998764 44666765544 677788999999999999988 45
Q ss_pred CChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHHH
Q 047408 557 PDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM--PVAPDATIWGSL 633 (830)
Q Consensus 557 Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m--~~~p~~~~~~~l 633 (830)
|+.. .+..+..++...|++++|...+...... .|. ...+...+...+..+++...+... ...++...+..+
T Consensus 175 p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l 248 (334)
T d1dcea1 175 FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELS 248 (334)
T ss_dssp CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCC
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHH
Confidence 6654 5777778888888887776555443311 111 122334456667777787776664 223345566677
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 634 LCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 634 l~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
...+...|+.++|...+.++++.+|++...+..++++|.+.|++++|.+.++...+
T Consensus 249 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 249 VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77788889999999999999999999999999999999999999999999998765
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.44 E-value=3.3e-07 Score=86.76 Aligned_cols=92 Identities=13% Similarity=0.036 Sum_probs=46.7
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhh
Q 047408 596 EHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAE 673 (830)
Q Consensus 596 ~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 673 (830)
..+.-.+..|.+.|++++|++.|++. .+.| ++.+|..+..++...|+++.|+..++++++++|+++.+|..++.+|..
T Consensus 5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~ 84 (201)
T d2c2la1 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE 84 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 33334444455555555555555443 2233 344455555555555555555555555555555555555555555555
Q ss_pred hcCHHHHHHHHHHH
Q 047408 674 AEKWEEVKKLREKI 687 (830)
Q Consensus 674 ~g~~~~A~~~~~~m 687 (830)
.|++++|...+++.
T Consensus 85 l~~~~~A~~~~~~a 98 (201)
T d2c2la1 85 MESYDEAIANLQRA 98 (201)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 55555555555443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=2.9e-06 Score=79.44 Aligned_cols=139 Identities=9% Similarity=-0.061 Sum_probs=101.1
Q ss_pred HHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHH
Q 047408 500 VDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEG 578 (830)
Q Consensus 500 i~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a 578 (830)
...+...|+++.|.+.|+++..++...|..+...|...|++++|++.|++.++ +.|+.. .|..+..++.+.|++++|
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH--HhhhhhhhHHHHHHHHHhhccHHHH
Confidence 44577889999999999998888888899999999999999999999999988 566665 677788888899999999
Q ss_pred HHHHHHhHhhcCCCCCcc-hHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcc
Q 047408 579 WRFFNMMRYECNIEPKLE-HYACMVDLLSRTGNLSEAYRFIEMMPVAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFEL 656 (830)
Q Consensus 579 ~~~~~~m~~~~~~~p~~~-~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l 656 (830)
.+.|+...... .++.. .|. ..| +..+++ ..++..+..++...|+++.|...+++++++
T Consensus 90 ~~~~~kAl~~~--~~n~~~~~~-------~~~-----------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 90 IKDLKEALIQL--RGNQLIDYK-------ILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHTT--TTCSEEECG-------GGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhC--ccCchHHHH-------Hhh-----------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99888775321 11110 000 000 011111 234556666778888888888888888888
Q ss_pred CCCC
Q 047408 657 EPDN 660 (830)
Q Consensus 657 ~p~~ 660 (830)
.|+.
T Consensus 150 ~~~~ 153 (192)
T d1hh8a_ 150 KSEP 153 (192)
T ss_dssp CCSG
T ss_pred CCCc
Confidence 8874
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=1.1e-06 Score=79.60 Aligned_cols=89 Identities=15% Similarity=0.114 Sum_probs=75.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHH
Q 047408 601 MVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWE 678 (830)
Q Consensus 601 lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 678 (830)
....|.+.|++++|++.|++. .+.| +...|..+...+...|++++|...++++++++|+++.+|..++.+|...|+++
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHH
Confidence 456677889999999888886 4455 56888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 047408 679 EVKKLREKISR 689 (830)
Q Consensus 679 ~A~~~~~~m~~ 689 (830)
+|.+.++....
T Consensus 96 eA~~~~~~a~~ 106 (159)
T d1a17a_ 96 AALRDYETVVK 106 (159)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988877764
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=1e-06 Score=75.12 Aligned_cols=104 Identities=14% Similarity=0.134 Sum_probs=85.6
Q ss_pred HHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 047408 566 LYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHE 642 (830)
Q Consensus 566 l~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 642 (830)
...+...|++++|+..|+...+ +.| +...|..+..+|.+.|++++|++.+++. .+.| ++..|..+..++...|+
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~---~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIK---LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHh---cCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence 4556777888888888887763 345 3667888888888999999999888876 3445 67889999999999999
Q ss_pred HHHHHHHHHHHhccCCCCcchHHHHHHHHh
Q 047408 643 VKLAEKVAEHVFELEPDNTGYYVLLANVYA 672 (830)
Q Consensus 643 ~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 672 (830)
+++|+..++++++++|+++.++..+.++.+
T Consensus 87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 999999999999999999988888877754
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.33 E-value=6.5e-07 Score=75.71 Aligned_cols=89 Identities=18% Similarity=0.072 Sum_probs=80.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcC
Q 047408 599 ACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEK 676 (830)
Q Consensus 599 ~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 676 (830)
-.++..+.+.|++++|+..+++. ...| ++.+|..+...+...|++++|+..++++++++|+++.++..|+.+|...|+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence 34677788999999999999987 4566 578999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 047408 677 WEEVKKLREKI 687 (830)
Q Consensus 677 ~~~A~~~~~~m 687 (830)
+++|.+.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988764
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.25 E-value=1.3e-05 Score=80.37 Aligned_cols=201 Identities=11% Similarity=-0.009 Sum_probs=134.9
Q ss_pred chhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCC-----CCC----hhhHHHHHHHHHhcCCh
Q 047408 470 SLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIP-----AKD----LISWTIMIAGYGMHGFG 540 (830)
Q Consensus 470 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~-----~~d----~~~~~~li~~~~~~g~~ 540 (830)
..+++++|..++.. ..++|..+|++++|.+.|.+.. ..+ ..+|+.+...|.+.|++
T Consensus 29 ~~~~~~~Aa~~y~~---------------aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~ 93 (290)
T d1qqea_ 29 DSYKFEEAADLCVQ---------------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNS 93 (290)
T ss_dssp SHHHHHHHHHHHHH---------------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHH---------------HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCc
Confidence 34456666666554 4567889999999999988653 122 25788899999999999
Q ss_pred HHHHHHHHHHHHcCC---CCC--hhHHHHHHHHHH-ccCCHHHHHHHHHHhHhhcCCCCC----cchHHHHHHHHHhcCC
Q 047408 541 CDAIATFNDMRQAGI---EPD--EVSFISVLYACS-HSGLVDEGWRFFNMMRYECNIEPK----LEHYACMVDLLSRTGN 610 (830)
Q Consensus 541 ~~A~~l~~~m~~~g~---~Pd--~~t~~~ll~a~~-~~g~~~~a~~~~~~m~~~~~~~p~----~~~y~~lv~~l~r~g~ 610 (830)
++|++.|++..+.-. .+. ..++..+...|. ..|++++|.+++.....-+....+ ...|..+.+.|.+.|+
T Consensus 94 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~ 173 (290)
T d1qqea_ 94 VNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ 173 (290)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcCh
Confidence 999999998765211 111 224556666664 469999999999887532221111 3457788999999999
Q ss_pred HHHHHHHHHhC-CCCCC-------H-HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcch--H---HHHHHHHhh--h
Q 047408 611 LSEAYRFIEMM-PVAPD-------A-TIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGY--Y---VLLANVYAE--A 674 (830)
Q Consensus 611 ~~eA~~~~~~m-~~~p~-------~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~--~---~~l~~~y~~--~ 674 (830)
+++|.+.+++. ...|+ . ..+...+-.+...|+.+.|...+++..+++|..+.. + ..|+..|.. .
T Consensus 174 y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~ 253 (290)
T d1qqea_ 174 YIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDS 253 (290)
T ss_dssp HHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCH
Confidence 99999999886 11111 1 233444555678899999999999999999864432 2 334444443 3
Q ss_pred cCHHHHHHHHH
Q 047408 675 EKWEEVKKLRE 685 (830)
Q Consensus 675 g~~~~A~~~~~ 685 (830)
+++++|.+.++
T Consensus 254 e~~~eai~~y~ 264 (290)
T d1qqea_ 254 EQLSEHCKEFD 264 (290)
T ss_dssp TTHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 56888887764
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=7.2e-06 Score=74.97 Aligned_cols=83 Identities=13% Similarity=0.088 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCcCCCceeEEEECCEE
Q 047408 628 TIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIEIKGKV 707 (830)
Q Consensus 628 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~~~swi~~~~~~ 707 (830)
.+|+.+..+|...|++++|+..++++++++|+++.+|..++.+|...|++++|...++...+
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~------------------ 124 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ------------------ 124 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH------------------
Confidence 35666777788889999999999999999999999999999999999999999998887764
Q ss_pred EEEEeCCcCCCChhHHHHHHHHHHHHHHH
Q 047408 708 NIFVAGGSSHPHAKKIESLLKRLRLEMKR 736 (830)
Q Consensus 708 ~~f~~~~~~~p~~~~i~~~l~~l~~~~~~ 736 (830)
.+|+...+...+..+..++++
T Consensus 125 --------l~P~n~~~~~~l~~~~~~~~~ 145 (170)
T d1p5qa1 125 --------LYPNNKAAKTQLAVCQQRIRR 145 (170)
T ss_dssp --------HCSSCHHHHHHHHHHHHHHHH
T ss_pred --------hCCCCHHHHHHHHHHHHHHHH
Confidence 346666777777766655543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.21 E-value=2.5e-06 Score=80.48 Aligned_cols=121 Identities=7% Similarity=-0.153 Sum_probs=90.9
Q ss_pred CChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHH
Q 047408 557 PDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPD-ATIWGSL 633 (830)
Q Consensus 557 Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~l 633 (830)
|+.-.+......+...|++++|+..|..... +.| +...|..+..+|.+.|++++|++.+++. .+.|+ ..+|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~---~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT---RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHH
Confidence 5555566666777778888888888877653 345 3567778888888888888888888876 66774 6788889
Q ss_pred HHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHH
Q 047408 634 LCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEV 680 (830)
Q Consensus 634 l~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A 680 (830)
..++...|++++|...++++++++|++...+..+++.+...++...+
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~~~~~~ 125 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRW 125 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999988776666666665555544443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.20 E-value=7.5e-06 Score=76.51 Aligned_cols=116 Identities=13% Similarity=0.039 Sum_probs=83.3
Q ss_pred HHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 047408 569 CSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLA 646 (830)
Q Consensus 569 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 646 (830)
+...|++++|++.|..+ .+|+...|..+..+|.+.|++++|++.|++. .+.| ++..|..+..++...|++++|
T Consensus 15 ~~~~~d~~~Al~~~~~i-----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHH
Confidence 45566666666666543 2344555666777777777777777777665 4445 467788888888888888888
Q ss_pred HHHHHHHhccCCCCc----------------chHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 647 EKVAEHVFELEPDNT----------------GYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 647 ~~~~~~~~~l~p~~~----------------~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
...++++++..|.+. ..+..++.+|...|+|++|.+.++...+
T Consensus 90 ~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~ 148 (192)
T d1hh8a_ 90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 148 (192)
T ss_dssp HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 888888887655543 2356789999999999999999887765
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.19 E-value=4.6e-06 Score=75.38 Aligned_cols=114 Identities=10% Similarity=0.003 Sum_probs=86.5
Q ss_pred HHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 047408 567 YACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEV 643 (830)
Q Consensus 567 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~ 643 (830)
..+.+.|++++|...|+...+ +.|+ ...|..+..+|.+.|++++|++.|++. .+.| +..+|..+..++...|++
T Consensus 18 n~~~~~~~y~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIE---LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHhhhccc---cchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence 445567777777777776653 3453 566777778888888888888888776 4456 467899999999999999
Q ss_pred HHHHHHHHHHhccCCCCcchHHHHHHHH--hhhcCHHHHHHH
Q 047408 644 KLAEKVAEHVFELEPDNTGYYVLLANVY--AEAEKWEEVKKL 683 (830)
Q Consensus 644 ~~a~~~~~~~~~l~p~~~~~~~~l~~~y--~~~g~~~~A~~~ 683 (830)
++|...++++++++|+++..+..+..+. ...+.+++|...
T Consensus 95 ~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 95 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999998888776664 344557776654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.14 E-value=1.4e-05 Score=71.44 Aligned_cols=83 Identities=16% Similarity=0.048 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCcCCCceeEEEECCEE
Q 047408 628 TIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIEIKGKV 707 (830)
Q Consensus 628 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~~~swi~~~~~~ 707 (830)
.+|..+..++...|+++.|...++++++++|+++.+|..++.+|...|+|++|...++...+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~------------------ 129 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS------------------ 129 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------------------
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH------------------
Confidence 46677888899999999999999999999999999999999999999999999999887764
Q ss_pred EEEEeCCcCCCChhHHHHHHHHHHHHHHH
Q 047408 708 NIFVAGGSSHPHAKKIESLLKRLRLEMKR 736 (830)
Q Consensus 708 ~~f~~~~~~~p~~~~i~~~l~~l~~~~~~ 736 (830)
..|...++...+..+..++++
T Consensus 130 --------l~P~n~~~~~~l~~~~~kl~~ 150 (153)
T d2fbna1 130 --------LNPNNLDIRNSYELCVNKLKE 150 (153)
T ss_dssp --------HSTTCHHHHHHHHHHHHHHHH
T ss_pred --------hCCCCHHHHHHHHHHHHHHHH
Confidence 357778888888888877765
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=3.4e-06 Score=72.09 Aligned_cols=107 Identities=16% Similarity=0.009 Sum_probs=81.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCH---HHHHHHHHhC-CCCCCH---HHHHHHHH
Q 047408 564 SVLYACSHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNL---SEAYRFIEMM-PVAPDA---TIWGSLLC 635 (830)
Q Consensus 564 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~---~eA~~~~~~m-~~~p~~---~~~~~ll~ 635 (830)
.+++.+...+++++|.+.|+... .+.| +..++..+..+|.+.++. ++|+++++++ ...|+. .+|..|..
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL---~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEK---AAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 56677777888888888888776 3445 357777788888776554 4688888886 445543 37888899
Q ss_pred HHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhh
Q 047408 636 GCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAE 673 (830)
Q Consensus 636 ~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 673 (830)
+|...|++++|+..++++++++|++..+..++..+.-+
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~ 118 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKA 118 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998777776655543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=1.6e-05 Score=72.50 Aligned_cols=134 Identities=14% Similarity=0.007 Sum_probs=99.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHH
Q 047408 526 SWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLL 605 (830)
Q Consensus 526 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l 605 (830)
.+......+.+.|++++|++.|++.+.. .|....+ .+.-......+. ...|..+..+|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~--~~~~~~~------------~~~~~~~~~~~~--------~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF------------SNEEAQKAQALR--------LASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC------------CSHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhcccc------------chHHHhhhchhH--------HHHHHHHHHHH
Confidence 4555666788888888898888888762 2211110 000001111111 13467788889
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHH
Q 047408 606 SRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVK 681 (830)
Q Consensus 606 ~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~ 681 (830)
.+.|++++|++.+++. .+.| ++.+|..+..++...|++++|...++++++++|+++.+...++.++.+.+...+..
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e 150 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 150 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999886 5566 67889999999999999999999999999999999999999999988877766553
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=9.4e-06 Score=69.26 Aligned_cols=113 Identities=11% Similarity=0.117 Sum_probs=90.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHhccCCCC--cchHHHHHHH
Q 047408 598 YACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIH---HEVKLAEKVAEHVFELEPDN--TGYYVLLANV 670 (830)
Q Consensus 598 y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~l~p~~--~~~~~~l~~~ 670 (830)
...+++.+...+++++|++.|++. ...| ++.++..+..++... ++.++|+.+++++++.+|.+ ..++..|+.+
T Consensus 2 ~~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 2 MEAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 456788888999999999999987 4455 567888888887654 45667999999999998865 3478899999
Q ss_pred HhhhcCHHHHHHHHHHHHhCCCcCCCceeEEEECCEEEEEEeCCcCCCChhHHHHHHHHHHHHHHH
Q 047408 671 YAEAEKWEEVKKLREKISRRGLKKNPGCSWIEIKGKVNIFVAGGSSHPHAKKIESLLKRLRLEMKR 736 (830)
Q Consensus 671 y~~~g~~~~A~~~~~~m~~~g~~~~~~~swi~~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~~~~ 736 (830)
|.+.|++++|.+.++++.+ ..|+..+....+..+.+++++
T Consensus 82 y~~~g~~~~A~~~~~~aL~--------------------------~~P~~~~A~~l~~~I~~~~~k 121 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQ--------------------------TEPQNNQAKELERLIDKAMKK 121 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHH--------------------------HCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHH--------------------------hCcCCHHHHHHHHHHHHHHcC
Confidence 9999999999999998875 356666777777777776654
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.04 E-value=1.3e-05 Score=69.27 Aligned_cols=91 Identities=13% Similarity=0.169 Sum_probs=75.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcch-------HHHHH
Q 047408 598 YACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGY-------YVLLA 668 (830)
Q Consensus 598 y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~-------~~~l~ 668 (830)
+-.+.+.|.+.|++++|++.|++. .+.| +..+|..+..++...|+++.|...++++++++|+++.. |..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 345678888999999999999886 4455 57889999999999999999999999999999988764 55566
Q ss_pred HHHhhhcCHHHHHHHHHHHH
Q 047408 669 NVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 669 ~~y~~~g~~~~A~~~~~~m~ 688 (830)
.++...|++++|.+.++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal 106 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSL 106 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHH
Confidence 77788889999999987654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.03 E-value=1.4e-05 Score=72.89 Aligned_cols=84 Identities=14% Similarity=0.111 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCcCCCceeEEEECCE
Q 047408 627 ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIEIKGK 706 (830)
Q Consensus 627 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~~~swi~~~~~ 706 (830)
...|..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.++...+
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~----------------- 139 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE----------------- 139 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH-----------------
Confidence 457788888889999999999999999999999999999999999999999999999888775
Q ss_pred EEEEEeCCcCCCChhHHHHHHHHHHHHHHH
Q 047408 707 VNIFVAGGSSHPHAKKIESLLKRLRLEMKR 736 (830)
Q Consensus 707 ~~~f~~~~~~~p~~~~i~~~l~~l~~~~~~ 736 (830)
..|+..++...|..+..++++
T Consensus 140 ---------l~p~n~~~~~~l~~~~~~l~~ 160 (169)
T d1ihga1 140 ---------IAPEDKAIQAELLKVKQKIKA 160 (169)
T ss_dssp ---------HCTTCHHHHHHHHHHHHHHHH
T ss_pred ---------hCCCCHHHHHHHHHHHHHHHH
Confidence 346667788877777766553
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.96 E-value=4.3e-05 Score=76.47 Aligned_cols=171 Identities=9% Similarity=-0.032 Sum_probs=128.5
Q ss_pred CHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCh-hHHHHHHHHHHccCCHHHHHHHH
Q 047408 508 VLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIATFNDMRQA----GIEPDE-VSFISVLYACSHSGLVDEGWRFF 582 (830)
Q Consensus 508 ~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~ 582 (830)
++++|.++|.+ ....|...|++++|++.|.+..+. +-.|+. .+|..+...+...|++++|.+.+
T Consensus 32 ~~~~Aa~~y~~-----------aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~ 100 (290)
T d1qqea_ 32 KFEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (290)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHH-----------HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 46777766554 577899999999999999998762 222322 36888889999999999999999
Q ss_pred HHhHhhcCCCCC----cchHHHHHHHHHh-cCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 047408 583 NMMRYECNIEPK----LEHYACMVDLLSR-TGNLSEAYRFIEMM----PVAPD----ATIWGSLLCGCRIHHEVKLAEKV 649 (830)
Q Consensus 583 ~~m~~~~~~~p~----~~~y~~lv~~l~r-~g~~~eA~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~ 649 (830)
+....-+.-..+ ...+..+...|.. .|++++|++.+++. +...+ ..+|..+...+...|++++|...
T Consensus 101 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~ 180 (290)
T d1qqea_ 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHH
Confidence 876543221112 3455666667754 69999999999876 11111 35678888899999999999999
Q ss_pred HHHHhccCCCCcc-------hHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 650 AEHVFELEPDNTG-------YYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 650 ~~~~~~l~p~~~~-------~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
++++....|.++. .+..++.+|...|+++.|.+.++...+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~ 227 (290)
T d1qqea_ 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (290)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 9999998887653 345667778889999999999887764
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.93 E-value=5.3e-05 Score=68.78 Aligned_cols=81 Identities=15% Similarity=0.064 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCcCCCceeEEEECCEEE
Q 047408 629 IWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIEIKGKVN 708 (830)
Q Consensus 629 ~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~~~swi~~~~~~~ 708 (830)
+|..+..++...|++++|+..++++++++|++..+|..++.+|...|++++|.+.++.+.+
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~------------------- 126 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE------------------- 126 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------------
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------------------
Confidence 4555666778888999999999999999999988999999999999999999988887764
Q ss_pred EEEeCCcCCCChhHHHHHHHHHHHHHH
Q 047408 709 IFVAGGSSHPHAKKIESLLKRLRLEMK 735 (830)
Q Consensus 709 ~f~~~~~~~p~~~~i~~~l~~l~~~~~ 735 (830)
.+|+..++...+..+...++
T Consensus 127 -------l~P~n~~~~~~l~~~~~~~~ 146 (168)
T d1kt1a1 127 -------VNPQNKAARLQIFMCQKKAK 146 (168)
T ss_dssp -------SCTTCHHHHHHHHHHHHHHH
T ss_pred -------hCCCCHHHHHHHHHHHHHHH
Confidence 35666777777766655443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.87 E-value=0.00014 Score=65.81 Aligned_cols=86 Identities=12% Similarity=0.023 Sum_probs=74.3
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHh
Q 047408 595 LEHYACMVDLLSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYA 672 (830)
Q Consensus 595 ~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 672 (830)
...|..+..+|.+.|++++|+..+++. .+.| ++.+|..+..++...|++++|+..++++++++|+++.++..|..++.
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~ 156 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ 156 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 456777888999999999999999886 6667 47899999999999999999999999999999999999999988887
Q ss_pred hhcCHHHH
Q 047408 673 EAEKWEEV 680 (830)
Q Consensus 673 ~~g~~~~A 680 (830)
......++
T Consensus 157 ~l~~~~~~ 164 (169)
T d1ihga1 157 KIKAQKDK 164 (169)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655554
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.84 E-value=0.00012 Score=66.29 Aligned_cols=140 Identities=11% Similarity=0.002 Sum_probs=97.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHH
Q 047408 526 SWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLL 605 (830)
Q Consensus 526 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l 605 (830)
.+.-....+...|++.+|+..|++.+.. .|.... ...+. ......+. ...|..+..+|
T Consensus 17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~--~~~~~~-----------~~~~~-~~~~~~~~--------~~~~~Nla~~~ 74 (168)
T d1kt1a1 17 IVKEKGTVYFKGGKYVQAVIQYGKIVSW--LEMEYG-----------LSEKE-SKASESFL--------LAAFLNLAMCY 74 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCS-----------CCHHH-HHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHHhhc-----------cchhh-hhhcchhH--------HHHHHhHHHHH
Confidence 4555566677778888888877775541 110000 00000 00111111 23466678889
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHH-HHH
Q 047408 606 SRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEE-VKK 682 (830)
Q Consensus 606 ~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~-A~~ 682 (830)
.+.|++++|++.+++. .+.| +..+|..+..++...|++++|+..++++++++|+++.+...+..+....+...+ ..+
T Consensus 75 ~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk 154 (168)
T d1kt1a1 75 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRR 154 (168)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 9999999999999886 4445 578899999999999999999999999999999999999999999888776654 344
Q ss_pred HHHHH
Q 047408 683 LREKI 687 (830)
Q Consensus 683 ~~~~m 687 (830)
+++.|
T Consensus 155 ~~~~~ 159 (168)
T d1kt1a1 155 TYANM 159 (168)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.80 E-value=5.1e-06 Score=90.50 Aligned_cols=145 Identities=13% Similarity=0.002 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHHcCCCCChhHHHHHHHHH--HccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHHHHH
Q 047408 540 GCDAIATFNDMRQAGIEPDEVSFISVLYAC--SHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSEAYR 616 (830)
Q Consensus 540 ~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~--~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~eA~~ 616 (830)
+..+++.+++..+....|+..-....+..+ ...+.++.++..+. +.+++.|+ ...+..+...+.+.|+.++|..
T Consensus 65 y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~---~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~ 141 (497)
T d1ya0a1 65 FKNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELC---TVFNVDLPCRVKSSQLGIISNKQTHTSAIVK 141 (497)
T ss_dssp THHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHT---C------------------------------
T ss_pred HHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCCChhhHHHHHHhHHHHHhCCCHHHHHH
Confidence 345566666665544344443322222221 12233333433332 23345553 4556667777777777777766
Q ss_pred HHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHH
Q 047408 617 FIEMMPVAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKIS 688 (830)
Q Consensus 617 ~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~ 688 (830)
.++.. +.++ ..++..|+..++..|++++|+..++++++++|+++..|..|+.+|...|+..+|...+.+..
T Consensus 142 ~~~~a-l~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral 213 (497)
T d1ya0a1 142 PQSSS-CSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSI 213 (497)
T ss_dssp -CCHH-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHH-hCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55443 1122 24566677777777888888888888888888888888888888888888888877766554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.71 E-value=3.2e-05 Score=68.26 Aligned_cols=85 Identities=12% Similarity=0.045 Sum_probs=60.5
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh----------cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHh
Q 047408 605 LSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRI----------HHEVKLAEKVAEHVFELEPDNTGYYVLLANVYA 672 (830)
Q Consensus 605 l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~----------~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 672 (830)
|-|.+.+++|++.+++. .+.| ++.+|..+..++.. .+.+++|+..++++++++|+++.+|..++++|.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence 34555666666666665 3344 34555555555442 245688999999999999999999999999999
Q ss_pred hhcC-----------HHHHHHHHHHHHh
Q 047408 673 EAEK-----------WEEVKKLREKISR 689 (830)
Q Consensus 673 ~~g~-----------~~~A~~~~~~m~~ 689 (830)
..|+ +++|.+.+++..+
T Consensus 87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 87 SFAFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HcccchhhHHHHHHhHHHhhhhhhcccc
Confidence 8875 5777777776653
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.68 E-value=0.00013 Score=64.78 Aligned_cols=128 Identities=6% Similarity=-0.075 Sum_probs=94.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHH
Q 047408 525 ISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDL 604 (830)
Q Consensus 525 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~ 604 (830)
..+......+.+.|++.+|+..|++.+.. .|..... .-.........+ ....|..+..+
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~~~-----------~~~~~~~~~~~~--------~~~~~~Nla~~ 76 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEW-----------DDQILLDKKKNI--------EISCNLNLATC 76 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTC-----------CCHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchhhh-----------hhHHHHHhhhhH--------HHHHHhhHHHH
Confidence 46777778888999999999999988862 2211100 000000001111 12357778889
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhh
Q 047408 605 LSRTGNLSEAYRFIEMM-PVAP-DATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAE 673 (830)
Q Consensus 605 l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 673 (830)
|.+.|++++|++.+++. .+.| +..+|..+..++...|++++|...++++++++|+|+.+...+..+..+
T Consensus 77 ~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k 147 (153)
T d2fbna1 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 147 (153)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999999886 5566 578999999999999999999999999999999999887777665543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.57 E-value=0.00014 Score=66.54 Aligned_cols=120 Identities=8% Similarity=-0.033 Sum_probs=84.1
Q ss_pred HHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 047408 565 VLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAYRFIEMMPVAPDATIWGSLLCGCRIHHEVK 644 (830)
Q Consensus 565 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~ 644 (830)
........|++++|.+.|.....-+.-.+-... ...........-++. -....|..+...+...|+++
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~--------~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~~~ 84 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDL--------RDFQFVEPFATALVE----DKVLAHTAKAEAEIACGRAS 84 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG--------TTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccccccC--------cchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCch
Confidence 335677889999999999887743221110000 000111111111111 01356788899999999999
Q ss_pred HHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHH-----hCCCcCCC
Q 047408 645 LAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKIS-----RRGLKKNP 696 (830)
Q Consensus 645 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~-----~~g~~~~~ 696 (830)
+|...++++++++|.+...|..|+.+|.+.|++++|.+.++.++ +-|+.|.+
T Consensus 85 ~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~ 141 (179)
T d2ff4a2 85 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 141 (179)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence 99999999999999999999999999999999999999998874 35776543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.50 E-value=3.7e-05 Score=67.83 Aligned_cols=119 Identities=13% Similarity=0.031 Sum_probs=67.9
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHH
Q 047408 534 YGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLS 612 (830)
Q Consensus 534 ~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~ 612 (830)
|-+.+.+++|++.|++..+ +.|+.. .+..+..++...+....+.+ ..+.++
T Consensus 7 ~~r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e--------------------------~~~~~~ 58 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISD--------------------------AKQMIQ 58 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHH--------------------------HHHHHH
T ss_pred HHHHccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHhhhhhhhhH--------------------------HHHHHH
Confidence 4455667777777777777 456655 44444445543322211111 112234
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHH
Q 047408 613 EAYRFIEMM-PVAP-DATIWGSLLCGCRIH-----------HEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEE 679 (830)
Q Consensus 613 eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 679 (830)
+|++.+++. .+.| +..+|..+..++... ++++.|...++++++++|++..++..|+...-..+.+.+
T Consensus 59 ~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e 138 (145)
T d1zu2a1 59 EAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAE 138 (145)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 444444443 3334 244555555554433 246889999999999999998888777766554444444
Q ss_pred H
Q 047408 680 V 680 (830)
Q Consensus 680 A 680 (830)
+
T Consensus 139 ~ 139 (145)
T d1zu2a1 139 A 139 (145)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.46 E-value=0.00014 Score=60.68 Aligned_cols=86 Identities=15% Similarity=0.062 Sum_probs=45.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHh
Q 047408 530 MIAGYGMHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSR 607 (830)
Q Consensus 530 li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r 607 (830)
+...+.+.|++++|+..|++.+. ..|+.. .+..+..++.+.|++++|+..|+... .+.|+ ...+..+...|..
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al---~~~p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHAR---MLDPKDIAVHAALAVSHTN 96 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc--cccccchhhhhhhhhhhhhhhHHHhhccccccc---ccccccccchHHHHHHHHH
Confidence 34445555666666666666655 344433 45555555555566666665555544 22332 4445555555555
Q ss_pred cCCHHHHHHHHHh
Q 047408 608 TGNLSEAYRFIEM 620 (830)
Q Consensus 608 ~g~~~eA~~~~~~ 620 (830)
.|++++|++.+++
T Consensus 97 ~g~~~~A~~~l~~ 109 (112)
T d1hxia_ 97 EHNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 5555555555543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.45 E-value=0.0025 Score=61.97 Aligned_cols=219 Identities=11% Similarity=-0.030 Sum_probs=152.8
Q ss_pred chhhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHh----cCCHHHHHHHhhhCCC-CChhhHHHHHHHHHh--
Q 047408 464 ILPACASLAALERGREIHGYILRHGISADRNVANAIVDMYVK----CGVLVLARSLFDMIPA-KDLISWTIMIAGYGM-- 536 (830)
Q Consensus 464 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k----~g~~~~A~~~f~~m~~-~d~~~~~~li~~~~~-- 536 (830)
+-......++.++|.+.+..+.+.| +......|..+|.. ..+...|...+..... .+...+..+...+..
T Consensus 8 lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~ 84 (265)
T d1ouva_ 8 LGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQ 84 (265)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhcccccccccc
Confidence 3344456789999999999998876 55666668888877 5688999998887653 355666666555543
Q ss_pred --cCChHHHHHHHHHHHHcCCCCChhHHHHHHHHH--HccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHh----c
Q 047408 537 --HGFGCDAIATFNDMRQAGIEPDEVSFISVLYAC--SHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSR----T 608 (830)
Q Consensus 537 --~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~--~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r----~ 608 (830)
.++.+.|+..+++....|..+.... ....... ........+...+...... .+...+..|...|.. .
T Consensus 85 ~~~~~~~~a~~~~~~a~~~g~~~a~~~-l~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~L~~~~~~~~~~~ 159 (265)
T d1ouva_ 85 GVSQNTNKALQYYSKACDLKYAEGCAS-LGGIYHDGKVVTRDFKKAVEYFTKACDL----NDGDGCTILGSLYDAGRGTP 159 (265)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHCSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSC
T ss_pred ccchhhHHHHHHHhhhhhhhhhhHHHh-hcccccCCCcccchhHHHHHHhhhhhcc----cccchhhhhhhhhccCCCcc
Confidence 5678999999999888664322211 1122221 2345677777777765422 345667777777765 4
Q ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhh----hcCHHHH
Q 047408 609 GNLSEAYRFIEMMPVAPDATIWGSLLCGCRI----HHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAE----AEKWEEV 680 (830)
Q Consensus 609 g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~----~g~~~~A 680 (830)
.+...+...++...-..+..++..|...+.. ..|.+.|+..++++.+.+ ++..+..|+.+|.. ..+.++|
T Consensus 160 ~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A 237 (265)
T d1ouva_ 160 KDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQA 237 (265)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTH
T ss_pred cccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHH
Confidence 5677788887776434466666666655544 569999999999998874 56788999999986 4479999
Q ss_pred HHHHHHHHhCCC
Q 047408 681 KKLREKISRRGL 692 (830)
Q Consensus 681 ~~~~~~m~~~g~ 692 (830)
.+.+++.-+.|.
T Consensus 238 ~~~~~kAa~~g~ 249 (265)
T d1ouva_ 238 IENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHCcC
Confidence 999998877664
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.37 E-value=0.021 Score=56.80 Aligned_cols=189 Identities=13% Similarity=0.023 Sum_probs=104.8
Q ss_pred HHHHHHhhcCCChHHHHHHHhhcCCCCeehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCcchHHHHHHHhhccCcch
Q 047408 306 NTLLDMYSKCGDLDGAIRVFEKMGERSVVSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDVYAITSILHACACDGLLE 385 (830)
Q Consensus 306 ~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~ 385 (830)
..++..|.+.++.+.|.+++.+.. +..+|..+...+.+.....-| .+...+...+......++..+-..|..+
T Consensus 44 ~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e 116 (336)
T d1b89a_ 44 GRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFE 116 (336)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChH
Confidence 456666777777777777776553 445777777777776654432 2222333445555566777777777777
Q ss_pred hhhhHHHHHHhhcCCCchhhHHHHHHHHHhcCChHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhCCCCCccccccch
Q 047408 386 IGKDVHDYIKENDMQSSLYVSNALMDMYAKCGSMADAESVFNQMPVKDIVSWNTMIGALDLFVAMLQNFEPDGVTMACIL 465 (830)
Q Consensus 386 ~a~~~~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~~~~~~n~~i~al~~f~~m~~~~~pd~~t~~~ll 465 (830)
+...++...+... ..+..+++-|+..|++.+. ++-.+.+..... .+-..-++
T Consensus 117 ~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~~-~kl~e~l~~~s~--------------------------~y~~~k~~ 168 (336)
T d1b89a_ 117 ELITMLEAALGLE-RAHMGMFTELAILYSKFKP-QKMREHLELFWS--------------------------RVNIPKVL 168 (336)
T ss_dssp HHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCH-HHHHHHHHHHST--------------------------TSCHHHHH
T ss_pred HHHHHHHHHHcCC-ccchHHHHHHHHHHHHhCh-HHHHHHHHhccc--------------------------cCCHHHHH
Confidence 7777777655332 4456677778888877643 333333322211 11111223
Q ss_pred hhhcchhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHHhcCCHHHHHHHhhhCCCCChhhHHHHHHHHHhcCChHHHHH
Q 047408 466 PACASLAALERGREIHGYILRHGISADRNVANAIVDMYVKCGVLVLARSLFDMIPAKDLISWTIMIAGYGMHGFGCDAIA 545 (830)
Q Consensus 466 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~ 545 (830)
..|-..+ .|.-++-.|.+.|.+++|..+.-.-+ +++..-...+..+.+.++.+...+
T Consensus 169 ~~c~~~~----------------------l~~elv~Ly~~~~~~~~A~~~~i~~~-~~~~~~~~f~e~~~k~~N~e~~~~ 225 (336)
T d1b89a_ 169 RAAEQAH----------------------LWAELVFLYDKYEEYDNAIITMMNHP-TDAWKEGQFKDIITKVANVELYYR 225 (336)
T ss_dssp HHHHTTT----------------------CHHHHHHHHHHTTCHHHHHHHHHHST-TTTCCHHHHHHHHHHCSSTHHHHH
T ss_pred HHHHHcC----------------------ChHHHHHHHHhcCCHHHHHHHHHHcc-hhhhhHHHHHHHHHccCChHHHHH
Confidence 3332222 23446777888888888776653321 122233445566666666665555
Q ss_pred HHHHHHH
Q 047408 546 TFNDMRQ 552 (830)
Q Consensus 546 l~~~m~~ 552 (830)
+.....+
T Consensus 226 ~i~~yL~ 232 (336)
T d1b89a_ 226 AIQFYLE 232 (336)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555444
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.23 E-value=0.12 Score=51.13 Aligned_cols=279 Identities=11% Similarity=0.094 Sum_probs=156.0
Q ss_pred hhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCCccchHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhC
Q 047408 97 KTYCSILQLCADLKSLEDGKKVHSIICESGIVIDDGVLGSKLVFMFVTCGDLKEGRRVFNKIDNGKVFIWNLLMHEYSKT 176 (830)
Q Consensus 97 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~ 176 (830)
.....+...|.+.|.++.|..++..+ .-+..++..|.+.+++..|.+++.+.. +..+|.-+...+.+.
T Consensus 15 ~d~~~i~~~c~~~~lye~A~~lY~~~----------~d~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~~~ 82 (336)
T d1b89a_ 15 AHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDG 82 (336)
T ss_dssp --------------CTTTHHHHHHHT----------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHhC----------CCHHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHHhC
Confidence 34456677788888888888888633 225677788888888888887776543 455787788887777
Q ss_pred CChhHHHHHHHHHHHcCCCCCcccHHHHHHHHHhcCCCCCHHHHHHHHhhC---CCCCcchHHHHHHHHHhCCChhHHHH
Q 047408 177 GNFKESLYLFKKMQSLGIAADSYTFSCVLKCLAVVGNSRRVKDAHKLFDEL---SDRDVVSWNCMISGYIANGVAEKGLE 253 (830)
Q Consensus 177 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~~~~A~~lf~~m---~~~~~~~~n~li~~~~~~g~~~~A~~ 253 (830)
....-| .+...+...++.....++..|-..| ..++...+++.. ...+...++-++..|++.+ .++-++
T Consensus 83 ~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~---~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e 153 (336)
T d1b89a_ 83 KEFRLA-----QMCGLHIVVHADELEELINYYQDRG---YFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMRE 153 (336)
T ss_dssp TCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHH
T ss_pred cHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHH
Confidence 655432 2223334445555666777777766 467777777643 2345566777777777754 233333
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCchHHHHHHHHhhcCCChHHHHHHHhhcCCCCe
Q 047408 254 VFKEMLNLGFNVDLATMVTVLSGCANCGALMFGRAVHAFALKACFSKEISFNNTLLDMYSKCGDLDGAIRVFEKMGERSV 333 (830)
Q Consensus 254 l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~ 333 (830)
.++.. + +.....-++..|-..+-+ ..++-.|.+.|.+++|..+.=.-+ +++
T Consensus 154 ~l~~~---s---~~y~~~k~~~~c~~~~l~----------------------~elv~Ly~~~~~~~~A~~~~i~~~-~~~ 204 (336)
T d1b89a_ 154 HLELF---W---SRVNIPKVLRAAEQAHLW----------------------AELVFLYDKYEEYDNAIITMMNHP-TDA 204 (336)
T ss_dssp HHHHH---S---TTSCHHHHHHHHHTTTCH----------------------HHHHHHHHHTTCHHHHHHHHHHST-TTT
T ss_pred HHHhc---c---ccCCHHHHHHHHHHcCCh----------------------HHHHHHHHhcCCHHHHHHHHHHcc-hhh
Confidence 33222 1 223334445555444433 445666777777776655443211 122
Q ss_pred ehHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCc-----------chHHHHHHHhhccCcchhhhhHHHHHHhhcCCCc
Q 047408 334 VSWTSMIAGYAREGVFDGAIRLFRGMVREGIEPDV-----------YAITSILHACACDGLLEIGKDVHDYIKENDMQSS 402 (830)
Q Consensus 334 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-----------~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~ 402 (830)
......+..+.+..+++...++.....+. .|+. ..-.-++.-+.+.+++...+..+..+...| +
T Consensus 205 ~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n---~ 279 (336)
T d1b89a_ 205 WKEGQFKDIITKVANVELYYRAIQFYLEF--KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN---N 279 (336)
T ss_dssp CCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC---C
T ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHc--CHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC---h
Confidence 23334445555555555444444333331 1211 112344555566778888888888877666 3
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHhcCC
Q 047408 403 LYVSNALMDMYAKCGSMADAESVFNQMP 430 (830)
Q Consensus 403 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~ 430 (830)
..+.++|.+.|...++.+.-++..+.-.
T Consensus 280 ~~vn~al~~lyie~~d~~~l~~~i~~~~ 307 (336)
T d1b89a_ 280 KSVNESLNNLFITEEDYQALRTSIDAYD 307 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 4699999999999999776665555443
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.21 E-value=0.00047 Score=61.31 Aligned_cols=87 Identities=13% Similarity=-0.054 Sum_probs=61.2
Q ss_pred HHHHhcCCHHHHHHHHHhC----CCCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCC-------C-
Q 047408 603 DLLSRTGNLSEAYRFIEMM----PVAPD----------ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPD-------N- 660 (830)
Q Consensus 603 ~~l~r~g~~~eA~~~~~~m----~~~p~----------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~-------~- 660 (830)
..+.+.|++++|++.|++. +..|+ ...|+.+..++...|++++|...+++++++.|. .
T Consensus 17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~ 96 (156)
T d2hr2a1 17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG 96 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccccc
Confidence 3444556666666655554 22221 356778888888888888888888888765432 1
Q ss_pred ---cchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 661 ---TGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 661 ---~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
...|..++.+|...|++++|.+.+++..+
T Consensus 97 ~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 97 KLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22578899999999999999999988764
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.16 E-value=0.00064 Score=54.52 Aligned_cols=72 Identities=11% Similarity=0.099 Sum_probs=55.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhC----C----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHH
Q 047408 599 ACMVDLLSRTGNLSEAYRFIEMM----P----VAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLAN 669 (830)
Q Consensus 599 ~~lv~~l~r~g~~~eA~~~~~~m----~----~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 669 (830)
--++..+.+.|++++|.+.+++. + ..++ ..++..|..++...|++++|...++++++++|+++.++..+..
T Consensus 9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~ 88 (95)
T d1tjca_ 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKY 88 (95)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 34566666777777776666654 1 1233 4678899999999999999999999999999999988877754
Q ss_pred H
Q 047408 670 V 670 (830)
Q Consensus 670 ~ 670 (830)
+
T Consensus 89 ~ 89 (95)
T d1tjca_ 89 F 89 (95)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.12 E-value=0.0003 Score=76.04 Aligned_cols=133 Identities=7% Similarity=-0.075 Sum_probs=81.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHH
Q 047408 537 HGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAY 615 (830)
Q Consensus 537 ~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~ 615 (830)
.|.++.|+..+++..+ +.|+.. .+..+...+...|+.++|...+...... .| ...+.++++++...|++++|.
T Consensus 99 ~~~Y~~ai~~l~~~~~--l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~~-~~~~~~LG~l~~~~~~~~~A~ 172 (497)
T d1ya0a1 99 SGFYTQLLQELCTVFN--VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY---IC-QHCLVHLGDIARYRNQTSQAE 172 (497)
T ss_dssp HHHHHHHHHHHTC---------------------------------CCHHHHH---HH-HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHC--CChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC---CH-HHHHHHHHHHHHHcccHHHHH
Confidence 4556666666555443 455544 5666777788888888888777654321 11 246778999999999999999
Q ss_pred HHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhc
Q 047408 616 RFIEMM-PVAPD-ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAE 675 (830)
Q Consensus 616 ~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 675 (830)
+.+++. .+.|+ ...|+.|...+...|+..+|...+.+++.++|+.+.++..|..+|.+..
T Consensus 173 ~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 173 SYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence 999887 56675 5789999999999999999999999999999999999999988876543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.03 E-value=0.0007 Score=57.81 Aligned_cols=62 Identities=24% Similarity=0.221 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 628 TIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 628 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
..+..++..+...|++++|+..++++++++|+++..+..++.+|...|+|++|.+.++.+.+
T Consensus 5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 66 (128)
T d1elra_ 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (128)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence 34667888899999999999999999999999999999999999999999999999988764
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.92 E-value=0.0017 Score=51.87 Aligned_cols=80 Identities=13% Similarity=0.033 Sum_probs=64.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhccCCCC-------cchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCcCCCceeEEE
Q 047408 630 WGSLLCGCRIHHEVKLAEKVAEHVFELEPDN-------TGYYVLLANVYAEAEKWEEVKKLREKISRRGLKKNPGCSWIE 702 (830)
Q Consensus 630 ~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~-------~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~~~~~~swi~ 702 (830)
+-.++..+...|+++.|...+++++++.|.+ +.+|..|+++|.+.|++++|.+.++++.+
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~------------- 74 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE------------- 74 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH-------------
Confidence 4467778999999999999999999876554 34688999999999999999999998875
Q ss_pred ECCEEEEEEeCCcCCCChhHHHHHHHHHHHHHH
Q 047408 703 IKGKVNIFVAGGSSHPHAKKIESLLKRLRLEMK 735 (830)
Q Consensus 703 ~~~~~~~f~~~~~~~p~~~~i~~~l~~l~~~~~ 735 (830)
..|+..++...|..+.+.|.
T Consensus 75 -------------l~P~~~~a~~Nl~~~~~~l~ 94 (95)
T d1tjca_ 75 -------------LDPEHQRANGNLKYFEYIMA 94 (95)
T ss_dssp -------------HCTTCHHHHHHHHHHHHHHH
T ss_pred -------------hCcCCHHHHHHHHHHHHHhC
Confidence 35666777777776666553
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.84 E-value=0.00056 Score=66.57 Aligned_cols=123 Identities=10% Similarity=-0.016 Sum_probs=65.6
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCC-cchHHHHHHHHHhcCCHHH
Q 047408 536 MHGFGCDAIATFNDMRQAGIEPDEV-SFISVLYACSHSGLVDEGWRFFNMMRYECNIEPK-LEHYACMVDLLSRTGNLSE 613 (830)
Q Consensus 536 ~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~y~~lv~~l~r~g~~~e 613 (830)
+.|++++|++.|++.++ ..|+.. .+..+...+...|++++|.+.|+... .+.|+ ...+..+..++...+..++
T Consensus 8 ~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~---~l~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSI---KLFPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp TTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---HHCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHhccccHH
Confidence 45666666666666666 355443 45555566666666666666666655 23443 2333334444443444444
Q ss_pred HHHHHHhC--CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcch
Q 047408 614 AYRFIEMM--PVAPDA-TIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGY 663 (830)
Q Consensus 614 A~~~~~~m--~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 663 (830)
+..-.... ..+|+. ..+......+...|+.++|...++++.++.|+.+..
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~ 135 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 135 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence 33222211 122322 233333444666677777777777777777776554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.83 E-value=0.00034 Score=68.15 Aligned_cols=117 Identities=14% Similarity=0.117 Sum_probs=86.2
Q ss_pred HccCCHHHHHHHHHHhHhhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 047408 570 SHSGLVDEGWRFFNMMRYECNIEP-KLEHYACMVDLLSRTGNLSEAYRFIEMM-PVAPD-ATIWGSLLCGCRIHHEVKLA 646 (830)
Q Consensus 570 ~~~g~~~~a~~~~~~m~~~~~~~p-~~~~y~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a 646 (830)
.+.|++++|+..++... ...| +...+..+..+|++.|++++|.+.++.. ...|+ ...+..+...+...+..+++
T Consensus 7 L~~G~l~eAl~~l~~al---~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAI---KASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp TTTTCHHHHHHHHHHHH---HTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 45799999999999987 3466 4789999999999999999999999987 56675 45666555555544433333
Q ss_pred HHHHHHH-hccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 647 EKVAEHV-FELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 647 ~~~~~~~-~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
....... +..+|++...+...+.++...|++++|.+.++.+.+
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e 127 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 127 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 2222221 223455556677788999999999999999988876
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.69 E-value=0.0044 Score=54.65 Aligned_cols=67 Identities=15% Similarity=0.013 Sum_probs=44.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcch
Q 047408 597 HYACMVDLLSRTGNLSEAYRFIEMM--------PVAPD-----ATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGY 663 (830)
Q Consensus 597 ~y~~lv~~l~r~g~~~eA~~~~~~m--------~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 663 (830)
.|+.+..+|...|++++|.+.+++. ...++ ..+|..+..++...|++++|...+++++++.|+..+.
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~ 136 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 136 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhch
Confidence 3445555566666666665555443 12222 1356778888999999999999999999987765443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.53 E-value=0.0087 Score=53.99 Aligned_cols=71 Identities=13% Similarity=0.113 Sum_probs=55.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hHHHHHHHHHHccCCHHHHHHHHHHhH----hhcCCCCCcch
Q 047408 525 ISWTIMIAGYGMHGFGCDAIATFNDMRQAGIEPDE-VSFISVLYACSHSGLVDEGWRFFNMMR----YECNIEPKLEH 597 (830)
Q Consensus 525 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~~~~~p~~~~ 597 (830)
..|..+...+...|++++|+..++++++ +.|.. ..+..++.++...|+.++|++.|+.+. ++.|+.|..++
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~--~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 4677788888888999999999999888 45654 468888888999999999988888763 34688887654
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=96.30 E-value=0.072 Score=50.90 Aligned_cols=191 Identities=10% Similarity=-0.012 Sum_probs=132.5
Q ss_pred chhHHhHHHHHHHhcCCHHHHHHHhhhCC-CCChhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhHHHHHH
Q 047408 492 DRNVANAIVDMYVKCGVLVLARSLFDMIP-AKDLISWTIMIAGYGM----HGFGCDAIATFNDMRQAGIEPDEVSFISVL 566 (830)
Q Consensus 492 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~-~~d~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll 566 (830)
|+..+..|...+-+.|++++|.+.|++.. ..|..++-.|...|.. ..+...|...++.....+ .|... ..+.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~-~~~a~--~~l~ 77 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-YSNGC--HLLG 77 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHH--HHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc-ccchh--hccc
Confidence 34566677788889999999999999875 4467777777777765 568999999999988765 23222 2222
Q ss_pred HHH----HccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHH----hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047408 567 YAC----SHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLS----RTGNLSEAYRFIEMMPVAPDATIWGSLLCGCR 638 (830)
Q Consensus 567 ~a~----~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~----r~g~~~eA~~~~~~m~~~p~~~~~~~ll~~~~ 638 (830)
..+ ......++|...++..... |.. .....+...+. .......|...+.......+...|..|...+.
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~-g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~ 153 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDL-KYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYD 153 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHT-TCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHHHHHhhhhhh-hhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhc
Confidence 222 2356788999988876532 322 11122222222 34567777887777644567778888877776
Q ss_pred h----cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhh----hcCHHHHHHHHHHHHhCC
Q 047408 639 I----HHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAE----AEKWEEVKKLREKISRRG 691 (830)
Q Consensus 639 ~----~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~----~g~~~~A~~~~~~m~~~g 691 (830)
. ..+...+...++.+.+ +.++.+...|+.+|.. ..+.++|...+++..+.|
T Consensus 154 ~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g 212 (265)
T d1ouva_ 154 AGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE 212 (265)
T ss_dssp HTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT
T ss_pred cCCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhccc
Confidence 4 4577788888887764 5577888999999987 668999999998887755
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.92 E-value=0.14 Score=41.93 Aligned_cols=64 Identities=8% Similarity=0.067 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHHHhc---CCHHHHHHHHHHHhccCCCCc-chHHHHHHHHhhhcCHHHHHHHHHHHHh
Q 047408 626 DATIWGSLLCGCRIH---HEVKLAEKVAEHVFELEPDNT-GYYVLLANVYAEAEKWEEVKKLREKISR 689 (830)
Q Consensus 626 ~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~l~p~~~-~~~~~l~~~y~~~g~~~~A~~~~~~m~~ 689 (830)
...+.-...+++.++ .+.++|+.+++.++..+|.+. ..+..|+-.|.+.|++++|.+.++.+.+
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 333333344444433 345566667777776666553 4556666777777777777777666553
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=90.71 E-value=3.3 Score=33.16 Aligned_cols=139 Identities=9% Similarity=0.079 Sum_probs=84.8
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHhcCCHHHHH
Q 047408 536 MHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSRTGNLSEAY 615 (830)
Q Consensus 536 ~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r~g~~~eA~ 615 (830)
-.|..++..++..+.... .+..-|+-++--....-+-+-..+.++.+-+-+.+. .++++....
T Consensus 14 ldG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls--------------~C~Nlk~vv 76 (161)
T d1wy6a1 14 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKSVV 76 (161)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHHHH
T ss_pred HhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCch--------------hhhcHHHHH
Confidence 446666667766666542 122223333332233333344444444443333333 344444444
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhhhcCHHHHHHHHHHHHhCCCc
Q 047408 616 RFIEMMPVAPDATIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAEAEKWEEVKKLREKISRRGLK 693 (830)
Q Consensus 616 ~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~A~~~~~~m~~~g~~ 693 (830)
.-+-.+. .+....+--|....++|.-+.-..+++.+++-+.-+|.....+++.|.+.|.-.++-++..+.-++|++
T Consensus 77 ~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 77 ECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 4444432 223334445677788888888888988888877667888999999999999999999999888888875
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=88.62 E-value=1.6 Score=35.98 Aligned_cols=81 Identities=12% Similarity=0.043 Sum_probs=47.8
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCCCcchHHHHHHHHhh----hcCHHHHH
Q 047408 610 NLSEAYRFIEMMPVAPDATIWGSLLCGCRI----HHEVKLAEKVAEHVFELEPDNTGYYVLLANVYAE----AEKWEEVK 681 (830)
Q Consensus 610 ~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~----~g~~~~A~ 681 (830)
+.++|.+++++.--.-++.....|...+.. ..|.+.|...++++.+.. ++.....|+.+|.. ..+.++|.
T Consensus 38 ~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~ 115 (133)
T d1klxa_ 38 NKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAV 115 (133)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHH
Confidence 445555555544211233333333333322 346778888888877653 45567778888776 35788888
Q ss_pred HHHHHHHhCCC
Q 047408 682 KLREKISRRGL 692 (830)
Q Consensus 682 ~~~~~m~~~g~ 692 (830)
+.+++..+.|.
T Consensus 116 ~~~~~Aa~~G~ 126 (133)
T d1klxa_ 116 KTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHCCC
Confidence 88887777664
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=85.17 E-value=7.8 Score=30.94 Aligned_cols=114 Identities=10% Similarity=-0.053 Sum_probs=68.8
Q ss_pred chhhHHHHHHHHHHHHHhCCCCchhHHhHHHHHHH----------------------hcCCHHHHHHHhhhCCCCChhhH
Q 047408 470 SLAALERGREIHGYILRHGISADRNVANAIVDMYV----------------------KCGVLVLARSLFDMIPAKDLISW 527 (830)
Q Consensus 470 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~----------------------k~g~~~~A~~~f~~m~~~d~~~~ 527 (830)
..|.+++|.++.....+.. +..-||.+|--.. +|+++......|-.+. .+....
T Consensus 14 ldG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~n-~~se~v 89 (161)
T d1wy6a1 14 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINN-TLNEHV 89 (161)
T ss_dssp HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTT-CCCHHH
T ss_pred HhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHhc-chHHHH
Confidence 3477888888888877643 3333333332222 3344443333333322 233344
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhh
Q 047408 528 TIMIAGYGMHGFGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYE 588 (830)
Q Consensus 528 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 588 (830)
+..+..+.++|+-++-.++++.+.+. -+|+......+.+||.+.|...++-+++.+..++
T Consensus 90 dlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 90 NKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 55666777778777777777776663 4677777777778888888888888877776643
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.43 E-value=2.5 Score=34.12 Aligned_cols=54 Identities=19% Similarity=0.181 Sum_probs=37.6
Q ss_pred HHHHHHHHHhC-CCCC-CH-HHHHHHHHHHHhcCCHHHHHHHHHHHhccCCCCcchH
Q 047408 611 LSEAYRFIEMM-PVAP-DA-TIWGSLLCGCRIHHEVKLAEKVAEHVFELEPDNTGYY 664 (830)
Q Consensus 611 ~~eA~~~~~~m-~~~p-~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~ 664 (830)
+++|+.++++. ...| +. ..|--|.-+|.+.|+++.|+..++++++++|+|..+.
T Consensus 54 ~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~ 110 (124)
T d2pqrb1 54 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 110 (124)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHH
Confidence 34555555544 1223 22 4555667778899999999999999999999986443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=83.01 E-value=4.8 Score=32.75 Aligned_cols=112 Identities=13% Similarity=-0.019 Sum_probs=63.2
Q ss_pred ChHHHHHHHHHHHHcCCCCChhHHHHHHHHHHccCCHHHHHHHHHHhHhhcCCCCCcchHHHHHHHHHh----cCCHHHH
Q 047408 539 FGCDAIATFNDMRQAGIEPDEVSFISVLYACSHSGLVDEGWRFFNMMRYECNIEPKLEHYACMVDLLSR----TGNLSEA 614 (830)
Q Consensus 539 ~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~y~~lv~~l~r----~g~~~eA 614 (830)
++++|+++|++..+.|. | .....|. .....+.++|.++++...+. | +...+..|..+|.. ..+.++|
T Consensus 8 d~~~A~~~~~kaa~~g~-~--~a~~~l~--~~~~~~~~~a~~~~~~aa~~-g---~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE-M--FGCLSLV--SNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHTTC-T--THHHHHH--TCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHCCC-h--hhhhhhc--cccccCHHHHHHHHhhhhcc-c---chhhhhhHHHhhhhccccchhhHHH
Confidence 45677777777666552 2 2222222 23345667777777765432 2 23444445555543 3467888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhccCCC
Q 047408 615 YRFIEMMPVAPDATIWGSLLCGCRI----HHEVKLAEKVAEHVFELEPD 659 (830)
Q Consensus 615 ~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~l~p~ 659 (830)
.++|++.--.-++.....|...+.. ..|.++|...++++.++...
T Consensus 79 ~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~ 127 (133)
T d1klxa_ 79 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 127 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence 8888876222334444444444433 45888898888888776543
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