Citrus Sinensis ID: 047422

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-
Protein Sequence
MDGTAGTEGSSSSSSCSDSVGIARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRLLGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSYVATFSDLLTLLYTGIVMGMTVPVIYEKMGIK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccEEEEcccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHccccHHEEEEEccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mdgtagtegsssssscsdsvgiARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRllgkeppklsgleisEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSYVATFSDLLTLLYTGIVMGMTVPVIYEKMGIK
Flexible Loop (DISEMBL)
mdgtagtegsssssscsdsVGIARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRLLGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSYVATFSDLLTLLYTGIVMGMTVPVIYEKMGIK
Low Complexity Region (SEG)
MDGTAGTEGsssssscsdsVGIARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRLLGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSYVATFSDLLTLLYTGIVMGMTVPVIYEKMGIK
Disordered region (IsUnstruct)
*******************VGIARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRLLGK*************SALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSYVATFSDLLTLLYTGIVMGMTVPVIYEK****
Disordered Region (DISOPRED)
**********************ARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRLLGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSYVATFSDLLTLLYTGIVMGMTVPVIYEKMG**
Disordered Region (DISEMBL)
*******************VGIARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRLLGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSYVATFSDLLTLLYTGIVMGMTVPVIYEKMGIK
Disordered Region (DISPRO)
************SSSCSDSVGIARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRLLGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSYVATFSDLLTLLYTGIVMGMTVPVIYEKMGI*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDGTAGTEGSSSSSSCSDSVGIARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRLLGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSYVATFSDLLTLLYTGIVMGMTVPVIYEKMGIK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	171	2.2.26 [Sep-21-2011]
O64837	206	Reticulon-like protein B1	yes	no	0.865	0.718	0.493	2e-37
Q6DBN4	253	Reticulon-like protein B6	no	no	0.859	0.581	0.326	1e-16
O82352	255	Reticulon-like protein B5	no	no	0.859	0.576	0.326	6e-15
Q8GYH6	226	Reticulon-like protein B1	no	no	0.859	0.650	0.292	3e-14
Q9SUR3	275	Reticulon-like protein B1	no	no	0.859	0.534	0.292	1e-13
Q9FFS0	257	Reticulon-like protein B4	no	no	0.859	0.571	0.306	1e-13
Q9SH59	255	Reticulon-like protein B3	no	no	0.859	0.576	0.306	3e-13
Q9SUT9	271	Reticulon-like protein B2	no	no	0.859	0.542	0.285	2e-12
Q9LT71	200	Reticulon-like protein B1	no	no	0.859	0.735	0.278	2e-11
Q9M392	203	Reticulon-like protein B1	no	no	0.859	0.724	0.285	4e-11

>sp|O64837|RTNLM_ARATH Reticulon-like protein B13 OS=Arabidopsis thaliana GN=RTNLB13 PE=2 SV=1

 Score =  154 bits (389), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 73/148 (49%), Positives = 102/148 (68%)

Query: 22  IARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRLL 81
           I  D++LWRRK L+F+ LLVST+ W+LL  Y F  +T+ SW+ +++VS  FL GS++RLL
Sbjct: 15  IVEDIYLWRRKKLAFSTLLVSTSTWILLSFYGFTTITIVSWIGIAVVSMIFLWGSLLRLL 74

Query: 82  GKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSYV 141
            K  P+LSGLE+SE+  +E   S R ++EE  RWMF V  E EWFVFA+ V G  +LS +
Sbjct: 75  SKVEPELSGLEVSEEFVVETVRSCRMLMEEMVRWMFRVGAESEWFVFARTVLGFWILSRI 134

Query: 142 ATFSDLLTLLYTGIVMGMTVPVIYEKMG 169
               D  T L+ G+VMG+TVP ++E+ G
Sbjct: 135 GNLLDFHTCLFIGLVMGLTVPKLWEEYG 162

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DBN4|RTNLF_ARATH Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1

 Score = 85.9 bits (211), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 86/147 (58%)

Query: 21  GIARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRL 80
           G+  DVFLWR K LS ++L V+TAIWVL E+ +++FL++   + +  ++  FL  +    
Sbjct: 66  GLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAF 125

Query: 81  LGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSY 140
           + K PPK+  + I E+  L + ++ R  + +    +  +++ ++   F   V GL ++S 
Sbjct: 126 MNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWIISV 185

Query: 141 VATFSDLLTLLYTGIVMGMTVPVIYEK 167
           V  + + LTL+Y   V+  TVP++YEK
Sbjct: 186 VGNWFNFLTLVYICFVVLHTVPMLYEK 212

Arabidopsis thaliana (taxid: 3702)

>sp|O82352|RTNLE_ARATH Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1

 Score = 80.1 bits (196), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 85/147 (57%)

Query: 21  GIARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRL 80
           G   DVFLWR K LS  +L V+TAIWVL E+ +++ L++   +++  +   FL  +   L
Sbjct: 66  GKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNAHTL 125

Query: 81  LGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSY 140
           + K  P++  + + E++ L VA+S R  + +    +  +++ ++   F   V GL ++S 
Sbjct: 126 INKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISV 185

Query: 141 VATFSDLLTLLYTGIVMGMTVPVIYEK 167
           V  + + LTL+Y   V+  TVP++YEK
Sbjct: 186 VGNWFNFLTLVYICFVILHTVPMLYEK 212

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GYH6|RTNLP_ARATH Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 80/147 (54%)

Query: 21  GIARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRL 80
           G A D+ LWRR++LS  ++++ST  W++ E     FL+V+S + + ++  +F+   +   
Sbjct: 39  GKAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAF 98

Query: 81  LGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSY 140
             ++   L  L +SE+     A SFR  +         V+V  ++ +F + V  L +LS 
Sbjct: 99  RNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSA 158

Query: 141 VATFSDLLTLLYTGIVMGMTVPVIYEK 167
           + ++  L TLLY G ++ +T+P +Y K
Sbjct: 159 IGSYISLCTLLYIGTILSVTIPALYSK 185

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUR3|RTNLA_ARATH Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 81/147 (55%)

Query: 21  GIARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRL 80
           G   D+F+W+ K +S  +L  +TA WV+ E+ +++ LT+   + + +++  FL  +    
Sbjct: 87  GKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNATMF 146

Query: 81  LGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSY 140
           + K PPK+  + I E+  L++A+  R  +      +  ++  ++   F  A+AGL VLS 
Sbjct: 147 INKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWVLSI 206

Query: 141 VATFSDLLTLLYTGIVMGMTVPVIYEK 167
           +    + LTL Y  +V+  TVP+ Y+K
Sbjct: 207 LGGCFNFLTLAYIALVLLFTVPLAYDK 233

Plays a role in the Agrobacterium-mediated plant transformation via its interaction with VirB2, the major component of the T-pilus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFS0|RTNLD_ARATH Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 76/147 (51%)

Query: 21  GIARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRL 80
           G   D+FLWR K +S  +L   TA WVL E+++++ L      A+  ++  FL  +    
Sbjct: 66  GKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTF 125

Query: 81  LGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSY 140
           + K  P +  + I E   L++ +  R  +      + +++  K+   F   +AGL VLS 
Sbjct: 126 IHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSI 185

Query: 141 VATFSDLLTLLYTGIVMGMTVPVIYEK 167
           + +  + LTL YT  V+  T+PV+YEK
Sbjct: 186 IGSCYNFLTLFYTATVLLFTIPVLYEK 212

Plays a role in the Agrobacterium-mediated plant transformation via its interaction with VirB2, the major component of the T-pilus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SH59|RTNLC_ARATH Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1

 Score = 74.7 bits (182), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 78/147 (53%)

Query: 21  GIARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRL 80
           G   D+FLWR K +S  +L  +T  W+L E+ ++N LT+   +++  ++  FL  S    
Sbjct: 62  GKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSSASTF 121

Query: 81  LGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSY 140
           + K P  +  + I E   L++A+  R  +      +  ++  ++   F   +AGL VLS 
Sbjct: 122 IHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVLSK 181

Query: 141 VATFSDLLTLLYTGIVMGMTVPVIYEK 167
           V +  + LTL+Y   V+  T+PV+YEK
Sbjct: 182 VGSSCNFLTLIYIATVLLFTIPVLYEK 208

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUT9|RTNLB_ARATH Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1

 Score = 72.0 bits (175), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 77/147 (52%)

Query: 21  GIARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRL 80
           G   D+F+W+ K +S  +   +T  WVL E+ +++ LT+   + +  ++  FL  +    
Sbjct: 83  GKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMF 142

Query: 81  LGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSY 140
           + K PPK+  + I E+  L++A+  R  +      +  ++  ++   F  A+AGL VLS 
Sbjct: 143 IHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSI 202

Query: 141 VATFSDLLTLLYTGIVMGMTVPVIYEK 167
           +      LTL Y  +V+  TVP+ Y+K
Sbjct: 203 LGGCYSFLTLAYIALVLLFTVPLFYDK 229

Plays a role in the Agrobacterium-mediated plant transformation via its interaction with VirB2, the major component of the T-pilus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LT71|RTNLK_ARATH Reticulon-like protein B11 OS=Arabidopsis thaliana GN=RTNLB11 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 73/147 (49%)

Query: 21  GIARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRL 80
           G   D+ LWR +  +  LL+ ST  W L E   +N L+  S + + +V+  FL      +
Sbjct: 20  GSVADLLLWRNRTGAVILLISSTGFWFLFERAGYNLLSFVSNVLLLLVAIFFLWAKSATV 79

Query: 81  LGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSY 140
           L +  P +  +EI E+ A + A+  R  +         +++ +      Q    L  +SY
Sbjct: 80  LNRPLPPVPNMEIPEEFANKAADDLRVWINYVLSIASDITIARNPIRLLQVSLVLWAISY 139

Query: 141 VATFSDLLTLLYTGIVMGMTVPVIYEK 167
           V T  + LTL+Y G+++ ++ P++YEK
Sbjct: 140 VGTLINSLTLVYIGVLLSLSFPIVYEK 166

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M392|RTNLL_ARATH Reticulon-like protein B12 OS=Arabidopsis thaliana GN=RTNLB12 PE=2 SV=1

 Score = 67.4 bits (163), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 78/147 (53%)

Query: 21  GIARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRL 80
           GI  DV LWR+KN+S  ++ V+ A W++ E + +   T+ S + + ++S  FL      +
Sbjct: 22  GIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTLISSVLLLLLSILFLWSKSASI 81

Query: 81  LGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSY 140
           L +  P L   +ISE  A E +   R  V +  +    +++ ++  ++ +    L +LS 
Sbjct: 82  LNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMARDSELYTKVAVSLFLLSL 141

Query: 141 VATFSDLLTLLYTGIVMGMTVPVIYEK 167
           + +  D  TL +T +++ MTVP  YE+
Sbjct: 142 IGSLMDFQTLCHTSVLVVMTVPAFYER 168

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
225468508	214	PREDICTED: reticulon-like protein B13 [V	0.923	0.738	0.525	5e-41
255562661	206	conserved hypothetical protein [Ricinus	0.923	0.766	0.577	2e-40
255636379	212	unknown [Glycine max]	0.970	0.783	0.497	5e-39
351724107	212	24 kDa seed maturation protein [Glycine	0.970	0.783	0.497	5e-39
224096830	203	predicted protein [Populus trichocarpa]	0.842	0.709	0.638	7e-39
356496850	208	PREDICTED: LOW QUALITY PROTEIN: reticulo	0.970	0.798	0.467	3e-37
18400337	206	reticulon-like protein B13 [Arabidopsis	0.865	0.718	0.493	1e-35
297821619	206	reticulon family protein [Arabidopsis ly	0.918	0.762	0.464	2e-34
357483073	224	seed maturation protein [Medicago trunca	0.947	0.723	0.447	3e-32
357483041	160	seed maturation protein [Medicago trunca	0.795	0.85	0.492	8e-31

>gi|225468508|ref|XP_002270797.1| PREDICTED: reticulon-like protein B13 [Vitis vinifera] gi|297735839|emb|CBI18559.3| unnamed protein product [Vitis vinifera]

 Score =  172 bits (436), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 83/158 (52%), Positives = 110/158 (69%)

Query: 10  SSSSSSCSDSVGIARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVS 69
           SS+  S    + +ARD+ LWRRK +S  +  +STA WVL+EVYQFN +T+  W+ M++V+
Sbjct: 2   SSTEKSSQPILDLARDILLWRRKKMSVMVFFISTATWVLMEVYQFNSITIVCWVGMAVVT 61

Query: 70  FTFLSGSIMRLLGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFA 129
             F+ G++ RLLGKEPP LSGLEI+E+S  E+   FR  +EE  RWMF V  E EW+VFA
Sbjct: 62  SLFIWGNMCRLLGKEPPSLSGLEITEQSTTEMTILFRESIEEAVRWMFRVGAESEWYVFA 121

Query: 130 QAVAGLLVLSYVATFSDLLTLLYTGIVMGMTVPVIYEK 167
             V GL +LS V +  DLLTL Y GI+M +T+PVIY K
Sbjct: 122 GVVTGLWILSIVGSCMDLLTLAYIGIMMSVTIPVIYIK 159

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562661|ref|XP_002522336.1| conserved hypothetical protein [Ricinus communis] gi|223538414|gb|EEF40020.1| conserved hypothetical protein [Ricinus communis]

 Score =  170 bits (431), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 93/161 (57%), Positives = 119/161 (73%), Gaps = 3/161 (1%)

Query: 7   TEGSSSSSSCSDSVGIARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMS 66
           ++GS S    +D+V   +D+ LWRRK LS  +LLV+T  WVLL+VY+FNF+TVASWLAM 
Sbjct: 2   SDGSKSLLFSTDTV---KDIVLWRRKKLSLLVLLVATVTWVLLDVYEFNFITVASWLAML 58

Query: 67  IVSFTFLSGSIMRLLGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWF 126
           IV+  FL G+++RL  KE PK+S  +ISE++  E A S RG++EE  RWMFHVS E EWF
Sbjct: 59  IVTSLFLYGNLVRLFRKEEPKISNWKISEETTTETAKSVRGMIEEGIRWMFHVSAESEWF 118

Query: 127 VFAQAVAGLLVLSYVATFSDLLTLLYTGIVMGMTVPVIYEK 167
           +FA+ V  L +LSYV +F D LTLLY G VMGM+VPVIY K
Sbjct: 119 IFARVVTVLWLLSYVGSFFDFLTLLYVGTVMGMSVPVIYVK 159

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255636379|gb|ACU18528.1| unknown [Glycine max]

 Score =  165 bits (418), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 83/167 (49%), Positives = 118/167 (70%), Gaps = 1/167 (0%)

Query: 2   DGTAGTEGSSSSSSCSD-SVGIARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVA 60
           +  A T+  ++ S  SD   GI +DV LWRRK ++ ++L+ +TA WVL+EV++FNFLT+ 
Sbjct: 4   ETKAETQTLTTPSYSSDVDNGIVKDVVLWRRKKINISVLVAATAAWVLMEVFEFNFLTLI 63

Query: 61  SWLAMSIVSFTFLSGSIMRLLGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVS 120
           SW+A+  ++  FL  +++RLLGKEPP L GLE+SEK+   +A++ R  +EE  RW+F V 
Sbjct: 64  SWVAILGLASIFLYANMLRLLGKEPPNLLGLEVSEKTTTRIAHTVRAWIEEGIRWLFLVG 123

Query: 121 VEKEWFVFAQAVAGLLVLSYVATFSDLLTLLYTGIVMGMTVPVIYEK 167
            EKEW VF  AVAGLL LSY+ +  DLLTL+Y G ++GM VP+ Y K
Sbjct: 124 AEKEWPVFVGAVAGLLSLSYLGSCMDLLTLVYMGTLVGMAVPLTYVK 170

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724107|ref|NP_001237302.1| 24 kDa seed maturation protein [Glycine max] gi|4102690|gb|AAD01540.1| 24 kDa seed maturation protein [Glycine max]

 Score =  165 bits (418), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 83/167 (49%), Positives = 118/167 (70%), Gaps = 1/167 (0%)

Query: 2   DGTAGTEGSSSSSSCSD-SVGIARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVA 60
           +  A T+  ++ S  SD   GI +DV LWRRK ++ ++L+ +TA WVL+EV++FNFLT+ 
Sbjct: 4   ETKAETQTLTTPSYSSDVDNGIVKDVVLWRRKKINISVLVAATAAWVLMEVFEFNFLTLI 63

Query: 61  SWLAMSIVSFTFLSGSIMRLLGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVS 120
           SW+A+  ++  FL  +++RLLGKEPP L GLE+SEK+   +A++ R  +EE  RW+F V 
Sbjct: 64  SWVAILGLASIFLYANMLRLLGKEPPNLLGLEVSEKTTTRIAHTVRAWIEEGIRWLFLVG 123

Query: 121 VEKEWFVFAQAVAGLLVLSYVATFSDLLTLLYTGIVMGMTVPVIYEK 167
            EKEW VF  AVAGLL LSY+ +  DLLTL+Y G ++GM VP+ Y K
Sbjct: 124 AEKEWPVFVGAVAGLLSLSYLGSCMDLLTLVYMGTLVGMAVPLTYVK 170

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224096830|ref|XP_002310752.1| predicted protein [Populus trichocarpa] gi|222853655|gb|EEE91202.1| predicted protein [Populus trichocarpa]

 Score =  165 bits (417), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 92/144 (63%), Positives = 108/144 (75%)

Query: 24  RDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRLLGK 83
           RDVFLWRRK LS  +LLVSTA WV L+VYQFN +TVASW AM  V+  FL G+I R L K
Sbjct: 16  RDVFLWRRKKLSLLVLLVSTATWVSLDVYQFNLITVASWAAMFAVTSLFLYGNIARFLRK 75

Query: 84  EPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSYVAT 143
           E P LSGLEISE++A+E A S R  +EE  RWM HVS E+E F+FA+ VA L +LSYV +
Sbjct: 76  EEPDLSGLEISEQTAIEAARSVRQSIEEGVRWMCHVSAERELFLFARVVAALCLLSYVGS 135

Query: 144 FSDLLTLLYTGIVMGMTVPVIYEK 167
           F D L+LLY  IV+GMTVPVIY K
Sbjct: 136 FWDSLSLLYIDIVVGMTVPVIYVK 159

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356496850|ref|XP_003517278.1| PREDICTED: LOW QUALITY PROTEIN: reticulon-like protein B13-like [Glycine max]

 Score =  159 bits (403), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 78/167 (46%), Positives = 113/167 (67%), Gaps = 1/167 (0%)

Query: 1   MDGTAGTEGSSSSSSCSDSVGIARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVA 60
           M      E   S SS  D+ GI +DV LWRRK ++ ++L+ +T  WVL+EV++FNFL V 
Sbjct: 1   MSSETKVETQPSYSSDVDN-GIEKDVVLWRRKKINISVLVXATVAWVLMEVFEFNFLAVV 59

Query: 61  SWLAMSIVSFTFLSGSIMRLLGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVS 120
           SW+A+ +++  FL  +++RLLGKEPP L  LE++E++   +A + R  ++E  RW+F V 
Sbjct: 60  SWVAILVLASIFLYANMLRLLGKEPPNLLRLEVTEETTTRIAKTVRAWIKEAIRWLFLVG 119

Query: 121 VEKEWFVFAQAVAGLLVLSYVATFSDLLTLLYTGIVMGMTVPVIYEK 167
            EKEW VF  AVA LL+LSY+ +  DLLTL+Y G ++GM VP+ Y K
Sbjct: 120 AEKEWPVFVGAVAALLLLSYIGSCMDLLTLVYMGTLVGMAVPLTYVK 166

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18400337|ref|NP_565555.1| reticulon-like protein B13 [Arabidopsis thaliana] gi|75099222|sp|O64837.1|RTNLM_ARATH RecName: Full=Reticulon-like protein B13; Short=AtRTNLB13 gi|3152617|gb|AAC17096.1| putative seed maturation protein [Arabidopsis thaliana] gi|20197004|gb|AAM14868.1| putative seed maturation protein [Arabidopsis thaliana] gi|330252381|gb|AEC07475.1| reticulon-like protein B13 [Arabidopsis thaliana]

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 73/148 (49%), Positives = 102/148 (68%)

Query: 22  IARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRLL 81
           I  D++LWRRK L+F+ LLVST+ W+LL  Y F  +T+ SW+ +++VS  FL GS++RLL
Sbjct: 15  IVEDIYLWRRKKLAFSTLLVSTSTWILLSFYGFTTITIVSWIGIAVVSMIFLWGSLLRLL 74

Query: 82  GKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSYV 141
            K  P+LSGLE+SE+  +E   S R ++EE  RWMF V  E EWFVFA+ V G  +LS +
Sbjct: 75  SKVEPELSGLEVSEEFVVETVRSCRMLMEEMVRWMFRVGAESEWFVFARTVLGFWILSRI 134

Query: 142 ATFSDLLTLLYTGIVMGMTVPVIYEKMG 169
               D  T L+ G+VMG+TVP ++E+ G
Sbjct: 135 GNLLDFHTCLFIGLVMGLTVPKLWEEYG 162

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821619|ref|XP_002878692.1| reticulon family protein [Arabidopsis lyrata subsp. lyrata] gi|297324531|gb|EFH54951.1| reticulon family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  150 bits (378), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/157 (46%), Positives = 102/157 (64%)

Query: 13  SSSCSDSVGIARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTF 72
           +   S    I  D+ LWRRK L+F++L VST+ W+LL  Y F  +T+ SW+ +++VS  F
Sbjct: 6   TKDPSPKSDIVEDIILWRRKKLAFSILSVSTSTWILLNFYGFTTITIISWIGIAVVSMVF 65

Query: 73  LSGSIMRLLGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAV 132
           L GS++RLL K  P+LSGLE+SE+  +E   S R ++EE  RWMF V  E EWFV A+ V
Sbjct: 66  LWGSLLRLLSKVEPELSGLEVSEEFVVETVRSCRMLMEETVRWMFRVGAESEWFVLARTV 125

Query: 133 AGLLVLSYVATFSDLLTLLYTGIVMGMTVPVIYEKMG 169
            G  VLS +    D  T L+ G+VMG+TVP +++K G
Sbjct: 126 LGFWVLSRIGNLLDFHTCLFIGLVMGLTVPKLWDKYG 162

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357483073|ref|XP_003611823.1| seed maturation protein [Medicago truncatula] gi|355513158|gb|AES94781.1| seed maturation protein [Medicago truncatula]

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 73/163 (44%), Positives = 108/163 (66%), Gaps = 1/163 (0%)

Query: 5   AGTEGSSSSSSCSDSVGIARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLA 64
           + T G++  S  S +  I  D+ LWRRK LS  +L+V+T+ W+LLEV QFNFLT+ SWLA
Sbjct: 16  SHTSGNNFVSQDSGN-DIMNDIVLWRRKKLSAIVLIVATSSWMLLEVCQFNFLTLISWLA 74

Query: 65  MSIVSFTFLSGSIMRLLGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKE 124
           + +V+  FL  +++   GKEPP L  LE+ E++A  +A + R  +E+  RW+F VS++++
Sbjct: 75  IFVVTSIFLYSNMLTFFGKEPPNLLRLELKEETATRMAKTVRAWIEKSIRWLFVVSIKED 134

Query: 125 WFVFAQAVAGLLVLSYVATFSDLLTLLYTGIVMGMTVPVIYEK 167
           W VF   +  LL +SYV T  D LT +Y GI+ GMT+P+ Y K
Sbjct: 135 WPVFVGVMVRLLAISYVGTCMDFLTFIYIGILTGMTLPITYMK 177

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357483041|ref|XP_003611807.1| seed maturation protein [Medicago truncatula] gi|355513142|gb|AES94765.1| seed maturation protein [Medicago truncatula]

 Score =  138 bits (347), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 67/136 (49%), Positives = 93/136 (68%)

Query: 28  LWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRLLGKEPPK 87
           LWRRK L   +L+ +T  WV +EVYQFNFLT+ SWL + +V+  FL  +++ L GKEPP 
Sbjct: 20  LWRRKKLGTIVLIAATTTWVSMEVYQFNFLTLISWLTIFVVTSIFLYSNMLTLFGKEPPN 79

Query: 88  LSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSYVATFSDL 147
           L  LE+ E++A  +A + R  +E+  RW+F VS++K+W VF   +A L V+SYV T  D 
Sbjct: 80  LLRLELKEETATRMAKTVRAWIEKSIRWLFVVSIKKDWPVFVGVMAALFVISYVGTCMDF 139

Query: 148 LTLLYTGIVMGMTVPV 163
           LT +Y GIV GMT+PV
Sbjct: 140 LTFIYIGIVAGMTLPV 155

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
TAIR|locus:2046783	206	RTNLB13 "AT2G23640" [Arabidops	0.865	0.718	0.493	1.1e-37
TAIR|locus:2062882	255	AT2G46170 [Arabidopsis thalian	0.859	0.576	0.326	2e-17
TAIR|locus:2080315	203	AT3G54120 "AT3G54120" [Arabido	0.859	0.724	0.285	2.9e-16
TAIR|locus:1005716554	249	AT3G10915 [Arabidopsis thalian	0.853	0.586	0.299	2.9e-16
TAIR|locus:2128494	275	BTI1 "VIRB2-interacting protei	0.859	0.534	0.292	7.7e-16
TAIR|locus:2160447	257	BTI3 "VIRB2-interacting protei	0.859	0.571	0.306	9.8e-16
TAIR|locus:2128238	271	BTI2 "VIRB2-interacting protei	0.859	0.542	0.285	8.8e-15
TAIR|locus:2089663	225	AT3G18260 "AT3G18260" [Arabido	0.853	0.648	0.267	3e-14
TAIR|locus:2090609	218	AT3G19460 "AT3G19460" [Arabido	0.479	0.376	0.304	4.7e-12
TAIR|locus:2049077	201	AT2G15280 "AT2G15280" [Arabido	0.853	0.726	0.270	1.7e-11

TAIR|locus:2046783 RTNLB13 "AT2G23640" [Arabidopsis thaliana (taxid:3702)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 73/148 (49%), Positives = 102/148 (68%)

Query:    22 IARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRLL 81
             I  D++LWRRK L+F+ LLVST+ W+LL  Y F  +T+ SW+ +++VS  FL GS++RLL
Sbjct:    15 IVEDIYLWRRKKLAFSTLLVSTSTWILLSFYGFTTITIVSWIGIAVVSMIFLWGSLLRLL 74

Query:    82 GKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSYV 141
              K  P+LSGLE+SE+  +E   S R ++EE  RWMF V  E EWFVFA+ V G  +LS +
Sbjct:    75 SKVEPELSGLEVSEEFVVETVRSCRMLMEEMVRWMFRVGAESEWFVFARTVLGFWILSRI 134

Query:   142 ATFSDLLTLLYTGIVMGMTVPVIYEKMG 169
                 D  T L+ G+VMG+TVP ++E+ G
Sbjct:   135 GNLLDFHTCLFIGLVMGLTVPKLWEEYG 162

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IDA

GO:0071782 "endoplasmic reticulum tubular network" evidence=IDA

GO:0071786 "endoplasmic reticulum tubular network organization" evidence=IMP

TAIR|locus:2062882 AT2G46170 [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 48/147 (32%), Positives = 85/147 (57%)

Query:    21 GIARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRL 80
             G   DVFLWR K LS  +L V+TAIWVL E+ +++ L++   +++  +   FL  +   L
Sbjct:    66 GKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNAHTL 125

Query:    81 LGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSY 140
             + K  P++  + + E++ L VA+S R  + +    +  +++ ++   F   V GL ++S 
Sbjct:   126 INKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISV 185

Query:   141 VATFSDLLTLLYTGIVMGMTVPVIYEK 167
             V  + + LTL+Y   V+  TVP++YEK
Sbjct:   186 VGNWFNFLTLVYICFVILHTVPMLYEK 212

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

GO:0006007 "glucose catabolic process" evidence=RCA

TAIR|locus:2080315 AT3G54120 "AT3G54120" [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 42/147 (28%), Positives = 78/147 (53%)

Query:    21 GIARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRL 80
             GI  DV LWR+KN+S  ++ V+ A W++ E + +   T+ S + + ++S  FL      +
Sbjct:    22 GIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTLISSVLLLLLSILFLWSKSASI 81

Query:    81 LGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSY 140
             L +  P L   +ISE  A E +   R  V +  +    +++ ++  ++ +    L +LS 
Sbjct:    82 LNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMARDSELYTKVAVSLFLLSL 141

Query:   141 VATFSDLLTLLYTGIVMGMTVPVIYEK 167
             + +  D  TL +T +++ MTVP  YE+
Sbjct:   142 IGSLMDFQTLCHTSVLVVMTVPAFYER 168

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:1005716554 AT3G10915 [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 44/147 (29%), Positives = 79/147 (53%)

Query:    22 IARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRLL 81
             IA D+ LWRR++LS  ++++ST  W++ E     FL+V+S + + ++  +F+   +    
Sbjct:    62 IAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFR 121

Query:    82 GKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEW-FVFAQAVAGLLVLSY 140
              ++   L  L +SE+     A SFR  +         V+V  ++   F Q V  L +LS 
Sbjct:   122 NRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKQVVICLWLLSA 181

Query:   141 VATFSDLLTLLYTGIVMGMTVPVIYEK 167
             + ++  L TLLY G ++ +T+P +Y K
Sbjct:   182 IGSYISLCTLLYIGTILSVTIPALYSK 208

GO:0005634 "nucleus" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128494 BTI1 "VIRB2-interacting protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 43/147 (29%), Positives = 81/147 (55%)

Query:    21 GIARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRL 80
             G   D+F+W+ K +S  +L  +TA WV+ E+ +++ LT+   + + +++  FL  +    
Sbjct:    87 GKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNATMF 146

Query:    81 LGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSY 140
             + K PPK+  + I E+  L++A+  R  +      +  ++  ++   F  A+AGL VLS 
Sbjct:   147 INKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWVLSI 206

Query:   141 VATFSDLLTLLYTGIVMGMTVPVIYEK 167
             +    + LTL Y  +V+  TVP+ Y+K
Sbjct:   207 LGGCFNFLTLAYIALVLLFTVPLAYDK 233

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IDA

GO:0071782 "endoplasmic reticulum tubular network" evidence=IDA

GO:0071786 "endoplasmic reticulum tubular network organization" evidence=IMP

TAIR|locus:2160447 BTI3 "VIRB2-interacting protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 45/147 (30%), Positives = 76/147 (51%)

Query:    21 GIARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRL 80
             G   D+FLWR K +S  +L   TA WVL E+++++ L      A+  ++  FL  +    
Sbjct:    66 GKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTF 125

Query:    81 LGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSY 140
             + K  P +  + I E   L++ +  R  +      + +++  K+   F   +AGL VLS 
Sbjct:   126 IHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSI 185

Query:   141 VATFSDLLTLLYTGIVMGMTVPVIYEK 167
             + +  + LTL YT  V+  T+PV+YEK
Sbjct:   186 IGSCYNFLTLFYTATVLLFTIPVLYEK 212

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IDA

GO:0071782 "endoplasmic reticulum tubular network" evidence=IDA

GO:0071786 "endoplasmic reticulum tubular network organization" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2128238 BTI2 "VIRB2-interacting protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 42/147 (28%), Positives = 77/147 (52%)

Query:    21 GIARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRL 80
             G   D+F+W+ K +S  +   +T  WVL E+ +++ LT+   + +  ++  FL  +    
Sbjct:    83 GKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMF 142

Query:    81 LGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSY 140
             + K PPK+  + I E+  L++A+  R  +      +  ++  ++   F  A+AGL VLS 
Sbjct:   143 IHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSI 202

Query:   141 VATFSDLLTLLYTGIVMGMTVPVIYEK 167
             +      LTL Y  +V+  TVP+ Y+K
Sbjct:   203 LGGCYSFLTLAYIALVLLFTVPLFYDK 229

GO:0005634 "nucleus" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IDA

GO:0071782 "endoplasmic reticulum tubular network" evidence=IDA

GO:0071786 "endoplasmic reticulum tubular network organization" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2089663 AT3G18260 "AT3G18260" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 39/146 (26%), Positives = 76/146 (52%)

Query:    21 GIARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRL 80
             G   D+ LWR   ++ TL++  + +W L+EV ++NF+T+    +M+ + F F+  +    
Sbjct:    37 GKVADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHASMTSMLFFFIWSTASDF 96

Query:    81 LGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSY 140
             L  E P +  + + E S  ++A SF     +    +  V+  ++  +F      L ++S 
Sbjct:    97 LNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDPPLFFLTTISLYIVSI 156

Query:   141 VATFSDLLTLLYTGIVMGMTVPVIYE 166
             + T+ + + LL+ G V   T+PV+YE
Sbjct:   157 IGTYFNFVNLLFIGFVSMQTLPVMYE 182

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2090609 AT3G19460 "AT3G19460" [Arabidopsis thaliana (taxid:3702)]

 Score = 109 (43.4 bits), Expect = 4.7e-12, Sum P(2) = 4.7e-12
 Identities = 25/82 (30%), Positives = 42/82 (51%)

Query:    25 DVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRLLGKE 84
             D+ LWR +  +  LL+ ST  W L E   +N L+  S + + +V+  FL      +L + 
Sbjct:     8 DLLLWRNRTGAVILLISSTGFWFLFERAGYNLLSFVSNVLLLLVAIFFLWAKSATVLNRP 67

Query:    85 PPKLSGLEISEKSALEVANSFR 106
              P +  +EI E+ A + A+  R
Sbjct:    68 LPPVPNMEIPEEFANKAADDLR 89

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2049077 AT2G15280 "AT2G15280" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 40/148 (27%), Positives = 71/148 (47%)

Query:    21 GIARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLT-VASWLAMSIVSFTFLSGSIMR 79
             G   D+ +W+ +   F LL  +T +W L E   ++F   V +   +S+V   FL      
Sbjct:    12 GSVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVV-ILFLWAKSAI 70

Query:    80 LLGKEPPKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLS 139
             L  +  P+L  LEI+E+    VA++ R  +         + V +      +    L  +S
Sbjct:    71 LFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFRVSVVLWTVS 130

Query:   140 YVATFSDLLTLLYTGIVMGMTVPVIYEK 167
             +V  F + LT+LY G+V+ + +P +YE+
Sbjct:   131 FVGNFLNFLTILYLGVVLSLLIPFLYER 158

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	171
pfam02453	164	pfam02453, Reticulon, Reticulon	8e-32

>gnl|CDD|217046 pfam02453, Reticulon, Reticulon

 Score =  111 bits (280), Expect = 8e-32
 Identities = 43/144 (29%), Positives = 80/144 (55%), Gaps = 1/144 (0%)

Query: 25  DVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRLLGKE 84
           D+ LWR    S  +      IW+L  +  ++ L+V S+L + +++ TFL     +LL   
Sbjct: 3   DLLLWRDPKKSGVVFGSLLVIWLLFSLSGYSLLSVLSYLLLLLLAVTFLWRLAKKLLNAV 62

Query: 85  P-PKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSYVAT 143
           P P    + +SE++  E+A+S R ++ +  + +  + + ++     +A  GL +LSY+ +
Sbjct: 63  PEPLDPDVTLSEETVEEIADSLRVLINKALKELRRLFLGEDLVDSLKAAVGLWLLSYLGS 122

Query: 144 FSDLLTLLYTGIVMGMTVPVIYEK 167
               LTLLY G+++  TVP++YEK
Sbjct: 123 LFSGLTLLYIGVILAFTVPLLYEK 146

Reticulon, also know as neuroendocrine-specific protein (NSP), is a protein of unknown function which associates with the endoplasmic reticulum. This family represents the C-terminal domain of the three reticulon isoforms and their homologues. Length = 164

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	171
KOG1792	230	consensus Reticulon [Intracellular trafficking, se	100.0
PF02453	169	Reticulon: Reticulon; InterPro: IPR003388 Eukaryot	99.98
PF04842	683	DUF639: Plant protein of unknown function (DUF639)	96.7
PF06398	359	Pex24p: Integral peroxisomal membrane peroxin; Int	93.33
PF08372	156	PRT_C: Plant phosphoribosyltransferase C-terminal;	89.74
PF08372	156	PRT_C: Plant phosphoribosyltransferase C-terminal;	84.16
KOG1792	230	consensus Reticulon [Intracellular trafficking, se	82.48

>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.6e-41  Score=275.81  Aligned_cols=153  Identities=33%  Similarity=0.550  Sum_probs=148.2

Q ss_pred             CCCccceeeecccCchhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCC--CCC-ceeeC
Q 047422           19 SVGIARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRLLGK-EPP--KLS-GLEIS   94 (171)
Q Consensus        19 ~~~~vaDlllWrd~~~S~~vf~~~t~~~~L~~~~~~s~iSvvs~~~l~~l~~~fl~~~~~~~~~~-~~p--~~~-~~~is   94 (171)
                      +||+++|+++|||+|+|+.+|++++++|++|+..+|+.+|++|+++++.+.+.|.|.+...+++| +.|  ..| ++++|
T Consensus        39 g~~~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ll~~~i~F~w~~~~~~~~k~~~~~~~lp~~i~ip  118 (230)
T KOG1792|consen   39 GGGKVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHILLLALAILFLWSKAVTFLNKKSEPGAYLPVEITIP  118 (230)
T ss_pred             CCCchhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCceeecC
Confidence            78999999999999999999999999999999999999999999999999999999999888888 666  456 99999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhcCC
Q 047422           95 EKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSYVATFSDLLTLLYTGIVMGMTVPVIYEKMGIK  171 (171)
Q Consensus        95 ee~~~~~a~~~~~~~n~~l~~l~~l~~~~d~~~flkv~~~L~ils~vGs~fs~lTLl~i~~v~~fTvP~lYe~~q~~  171 (171)
                      ||.++++++.++.++|+.++++|+++.++|++.|+|+++.||++|++|+|||++|++|+|++++||+|++|||||||
T Consensus       119 ee~~~~~a~~~~~~in~~l~~l~~ia~~~d~~~~lk~~v~lw~lS~vGs~fn~lTll~ig~v~~~TvP~~YEky~d~  195 (230)
T KOG1792|consen  119 EEFVLALASSLRVEINQALSELRDIALGRDLKDFLKVAVGLWILSYVGSLFNFLTLLYIGLVLLFTVPVLYEKYEDQ  195 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchhHHhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999986

>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER)

Probab=99.98  E-value=8.7e-36  Score=231.44  Aligned_cols=149  Identities=24%  Similarity=0.479  Sum_probs=48.2

Q ss_pred             cceeeecccCchhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------CCCCceeeCHH
Q 047422           23 ARDVFLWRRKNLSFTLLLVSTAIWVLLEVYQFNFLTVASWLAMSIVSFTFLSGSIMRLLGKEP------PKLSGLEISEK   96 (171)
Q Consensus        23 vaDlllWrd~~~S~~vf~~~t~~~~L~~~~~~s~iSvvs~~~l~~l~~~fl~~~~~~~~~~~~------p~~~~~~isee   96 (171)
                      |+|+++||||++||.+|++++++|++++++++|++|++|+++++.+.+.++++...+.+++.+      |..++.++|||
T Consensus         1 V~dll~W~~~~~S~~v~~~~~~~~~l~~~~~~s~is~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (169)
T PF02453_consen    1 VADLLLWRDPKKSGIVFGAILLFWLLFWLFNYSLISLVSYILLLLLAISFLYRLLSKVLSRSPKGPFKEPLDYDLEISEE   80 (169)
T ss_dssp             ----------------------------------------------------THCCCTCCHHHHCTTHHHHCHHHHHCCH
T ss_pred             CceeeEecCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccCCccccccccHH
Confidence            689999999999999999999999999999999999999999999999999888777777754      33567899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhcCC
Q 047422           97 SALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSYVATFSDLLTLLYTGIVMGMTVPVIYEKMGIK  171 (171)
Q Consensus        97 ~~~~~a~~~~~~~n~~l~~l~~l~~~~d~~~flkv~~~L~ils~vGs~fs~lTLl~i~~v~~fTvP~lYe~~q~~  171 (171)
                      .+++.++.+.+.+|+.++.+|++..++|+..++|+++++|+++++|+++|++||+|++++++||+|++||+||+|
T Consensus        81 ~~~~~~~~~~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l~~~~~f~~P~ly~~~~~~  155 (169)
T PF02453_consen   81 RVERLADSVAEWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYLGVLGAFTVPKLYEKYQEE  155 (169)
T ss_dssp             HHHHHHHHCCCCCCHHHHHHHCCCHCT-TTGGG------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999986

Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.

>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function

Probab=96.70  E-value=0.043  Score=51.81  Aligned_cols=135  Identities=13%  Similarity=0.074  Sum_probs=88.1

Q ss_pred             CccceeeecccCchhHHHHHHHHHHHHHH-HhhCchHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------CCCCCCce
Q 047422           21 GIARDVFLWRRKNLSFTLLLVSTAIWVLL-EVYQFNFLTVASWLAMSIVSFTFLSGSIMRLLGK--------EPPKLSGL   91 (171)
Q Consensus        21 ~~vaDlllWrd~~~S~~vf~~~t~~~~L~-~~~~~s~iSvvs~~~l~~l~~~fl~~~~~~~~~~--------~~p~~~~~   91 (171)
                      ..+.++..|+||.+|...++....  ..+ .+.+|-+     -..++.+++..+|...-+-.+|        .+|+...+
T Consensus       504 ~~~~~l~~We~P~kt~~Fl~~~~~--iI~r~wl~Y~~-----p~~Ll~~a~~Ml~~r~~~~~g~~~~~v~V~~pP~~nTv  576 (683)
T PF04842_consen  504 KWLQKLASWEEPLKTLVFLALFLY--IIYRGWLGYIF-----PAFLLFSAVFMLWLRYQGRLGKSFGEVTVRDPPPKNTV  576 (683)
T ss_pred             HHHHHHhhccCcchhHHHHHHHHH--HHHHHHHHHHH-----HHHHHHHHHHHHHHHhhhccCCccceEEecCCCCccHH
Confidence            345578999999999998854432  222 2222322     2223333333455332211222        23332211


Q ss_pred             --eeCHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 047422           92 --EISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSYVATFSDLLTLLYTGIVMGMTVP  162 (171)
Q Consensus        92 --~isee~~~~~a~~~~~~~n~~l~~l~~l~~~~d~~~flkv~~~L~ils~vGs~fs~lTLl~i~~v~~fTvP  162 (171)
                        .+.-..+..-++......|-++-++|.|...+.+.-+-+|++.|..++.+-..+-+--++...++-.||-.
T Consensus       577 EqilalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va~~Ll~~A~~LavvP~kyil~~v~l~~FTre  649 (683)
T PF04842_consen  577 EQILALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVALALLGLAAVLAVVPFKYILLFVFLEVFTRE  649 (683)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence              12223334445666778899999999999999999999999999999999999999999998888888853

>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide

Probab=93.33  E-value=1.5  Score=38.01  Aligned_cols=21  Identities=14%  Similarity=0.505  Sum_probs=16.7

Q ss_pred             CccceeeecccCchhHHHHHH
Q 047422           21 GIARDVFLWRRKNLSFTLLLV   41 (171)
Q Consensus        21 ~~vaDlllWrd~~~S~~vf~~   41 (171)
                      ..+.+++.|+|+..+-.++..
T Consensus        30 d~vl~il~W~~p~~t~~~L~l   50 (359)
T PF06398_consen   30 DRVLRILTWTNPDYTLSFLLL   50 (359)
T ss_pred             HHHHHeEEeCCCCcchHHHHH
Confidence            457789999999988777743

Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].

>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins

Probab=89.74  E-value=3  Score=32.71  Aligned_cols=60  Identities=17%  Similarity=-0.007  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 047422          106 RGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSYVATFSDLLTLLYTGIVMGMTVPVIY  165 (171)
Q Consensus       106 ~~~~n~~l~~l~~l~~~~d~~~flkv~~~L~ils~vGs~fs~lTLl~i~~v~~fTvP~lY  165 (171)
                      ...+....++++.++.++|+..+..+++++++.+++--+.-+..++.+..+-.++=|++-
T Consensus        75 lgd~At~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~r~P~~R  134 (156)
T PF08372_consen   75 LGDVATQGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKLRHPRFR  134 (156)
T ss_pred             HHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCcccc
Confidence            333445578899999999999999999998888888777777777777777777776653

It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).

>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins

Probab=84.16  E-value=0.84  Score=35.82  Aligned_cols=26  Identities=8%  Similarity=0.194  Sum_probs=21.8

Q ss_pred             CCCccceeeecccCchhHHHHHHHHH
Q 047422           19 SVGIARDVFLWRRKNLSFTLLLVSTA   44 (171)
Q Consensus        19 ~~~~vaDlllWrd~~~S~~vf~~~t~   44 (171)
                      .|+++..++.||||..|+....+..+
T Consensus        81 ~gERl~allsWrdP~aT~lf~~~clv  106 (156)
T PF08372_consen   81 QGERLQALLSWRDPRATALFVVFCLV  106 (156)
T ss_pred             HHHHHHHhhccCCccHHHHHHHHHHH
Confidence            68899999999999999988865433

It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).

>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.48  E-value=1.6  Score=36.38  Aligned_cols=55  Identities=4%  Similarity=-0.044  Sum_probs=51.1

Q ss_pred             HHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhc
Q 047422          115 WMFHVSVEKEWFVFAQAVAGLLVLSYVATFSDLLTLLYTGIVMGMTVPVIYEKMG  169 (171)
Q Consensus       115 ~l~~l~~~~d~~~flkv~~~L~ils~vGs~fs~lTLl~i~~v~~fTvP~lYe~~q  169 (171)
                      +..|+..|||.++++.+.++..++-.+-..++..++...+.+.++++++.|.+++
T Consensus        42 ~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ll~~~i~F~w~~   96 (230)
T KOG1792|consen   42 KVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHILLLALAILFLWSK   96 (230)
T ss_pred             chhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            5678999999999999999999999999999999999999999999999999886

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	171
2ko2_A	79	Reticulon-4; NOGO, membrane protein, peripheral, D	98.06
2g31_A	60	Reticulon-4; NOGO, helix, signaling protein; NMR {	97.62

>2ko2_A Reticulon-4; NOGO, membrane protein, peripheral, DPC micelle, myelin INHI endoplasmic reticulum, membrane, phosphoprotein, transmembr; NMR {Mus musculus}

Probab=98.06  E-value=1.3e-07  Score=65.13  Aligned_cols=58  Identities=17%  Similarity=0.155  Sum_probs=52.1

Q ss_pred             HHHHHHHHhCCC---CCCC----CceeeCHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHH
Q 047422           73 LSGSIMRLLGKE---PPKL----SGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQ  130 (171)
Q Consensus        73 l~~~~~~~~~~~---~p~~----~~~~isee~~~~~a~~~~~~~n~~l~~l~~l~~~~d~~~flk  130 (171)
                      +|+++.+.++|+   +|+.    .|+.+|+|.++++++.+..++|.+++++|+++..+|+..++|
T Consensus        15 iYk~vlqavqKtd~~hPFk~YLd~Di~ls~E~~~~~~~~~v~~in~~l~~LRrLfLVedlvDSLK   79 (79)
T 2ko2_A           15 IYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLK   79 (79)
T ss_dssp             HHHHTHHHHHCTTTTCCSHHHHHHHHHHTTCHHHHHHHCTTTHHHHHHHHHHHHHHHTCTTGGGC
T ss_pred             HHHHHHHHHHhCCCCCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcccHHHhcC
Confidence            788888888884   6774    799999999999999999999999999999999999887764

>2g31_A Reticulon-4; NOGO, helix, signaling protein; NMR {Homo sapiens} PDB: 2jv5_A

Probab=97.62  E-value=6.4e-07  Score=58.62  Aligned_cols=50  Identities=20%  Similarity=0.185  Sum_probs=42.5

Q ss_pred             HHHHHHhCC---CCCCC----CceeeCHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q 047422           75 GSIMRLLGK---EPPKL----SGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKE  124 (171)
Q Consensus        75 ~~~~~~~~~---~~p~~----~~~~isee~~~~~a~~~~~~~n~~l~~l~~l~~~~d  124 (171)
                      +++.+.++|   .||+.    .|+.+|+|.++++++.+..++|.+++.+|+++..+|
T Consensus         4 k~vlqavqKt~~~hPFk~yLd~di~ls~e~~~~~~~~~v~~in~~l~~lrrLfLVed   60 (60)
T 2g31_A            4 KGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDD   60 (60)
T ss_dssp             CTTTTHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHGGGTCHHHHHHHHTSSCTTC
T ss_pred             HHHHHHHHhCCCCCCchhccccCcCCCHHHHHHHHHHHHHHHHHHHHHHhHhhccCC
Confidence            344455555   48884    799999999999999999999999999999998876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00