Citrus Sinensis ID: 047490
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 323 | 2.2.26 [Sep-21-2011] | |||||||
| Q5VRY0 | 625 | DEAD-box ATP-dependent RN | yes | no | 1.0 | 0.516 | 0.888 | 1e-174 | |
| Q56X76 | 621 | DEAD-box ATP-dependent RN | yes | no | 1.0 | 0.520 | 0.854 | 1e-165 | |
| Q9VHP0 | 798 | ATP-dependent RNA helicas | yes | no | 0.866 | 0.350 | 0.354 | 4e-39 | |
| Q5B0J9 | 563 | ATP-dependent RNA helicas | yes | no | 0.842 | 0.483 | 0.344 | 4e-39 | |
| Q2U070 | 554 | ATP-dependent RNA helicas | yes | no | 0.832 | 0.485 | 0.348 | 6e-39 | |
| A1DGZ7 | 545 | ATP-dependent RNA helicas | N/A | no | 0.848 | 0.502 | 0.342 | 7e-39 | |
| A4RHF1 | 671 | ATP-dependent RNA helicas | N/A | no | 0.873 | 0.420 | 0.333 | 8e-39 | |
| A1C6C4 | 549 | ATP-dependent RNA helicas | N/A | no | 0.832 | 0.489 | 0.344 | 2e-38 | |
| Q2R1M8 | 623 | DEAD-box ATP-dependent RN | no | no | 0.922 | 0.478 | 0.323 | 2e-38 | |
| A2QC74 | 565 | ATP-dependent RNA helicas | yes | no | 0.832 | 0.476 | 0.341 | 3e-38 |
| >sp|Q5VRY0|RH39_ORYSJ DEAD-box ATP-dependent RNA helicase 39 OS=Oryza sativa subsp. japonica GN=Os01g0184500 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 610 bits (1574), Expect = e-174, Method: Compositional matrix adjust.
Identities = 287/323 (88%), Positives = 307/323 (95%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
LLR DEAMLG+ MKPRRPRAVVLCPTREL+EQVFRVAKSISHHARFRSTMVSGG R+RPQ
Sbjct: 171 LLRRDEAMLGMSMKPRRPRAVVLCPTRELTEQVFRVAKSISHHARFRSTMVSGGSRIRPQ 230
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
EDSLN P+DMVVGTPGRIL HI+DGNMVYGDIKYLVLDEADTMFD+GFGPDIRKFL PLK
Sbjct: 231 EDSLNMPVDMVVGTPGRILDHIKDGNMVYGDIKYLVLDEADTMFDQGFGPDIRKFLAPLK 290
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
NRA+KP QGFQTVLV+ATMTKAVQKL+DEE +GI HLRT+T K++A+ARHDFIKLSGS
Sbjct: 291 NRAAKPGDQGFQTVLVTATMTKAVQKLIDEEFEGIVHLRTTTFQKRVATARHDFIKLSGS 350
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
ENKLEALLQVLEPSL+KGNKVMVFCNTLNSSRAVDHFL ENQISTVNYHGEVPA+ERVEN
Sbjct: 351 ENKLEALLQVLEPSLAKGNKVMVFCNTLNSSRAVDHFLTENQISTVNYHGEVPAEERVEN 410
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
LNKF+NE+GDCPTLVCTDLAARGLDLDVDHVIMFDFP NSIDYLHRTGRTARMGAKGKVT
Sbjct: 411 LNKFRNEEGDCPTLVCTDLAARGLDLDVDHVIMFDFPSNSIDYLHRTGRTARMGAKGKVT 470
Query: 301 SLVAKKDVLLADRIEEAIRKNES 323
SLVAKKDV LA RIEEA++KNES
Sbjct: 471 SLVAKKDVTLATRIEEAMKKNES 493
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Oryza sativa subsp. japonica (taxid: 39947) EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3 |
| >sp|Q56X76|RH39_ARATH DEAD-box ATP-dependent RNA helicase 39 OS=Arabidopsis thaliana GN=RH39 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 582 bits (1499), Expect = e-165, Method: Compositional matrix adjust.
Identities = 276/323 (85%), Positives = 298/323 (92%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
L+R DEA LG KPRRPR VVLCPTRELSEQV+RVAKSISHHARFRS +VSGG R+RPQ
Sbjct: 173 LMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSRIRPQ 232
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
EDSLNN IDMVVGTPGRILQHIE+GNMVYGDI YLVLDEADTMFDRGFGP+IRKFL PL
Sbjct: 233 EDSLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEIRKFLAPLN 292
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
RA K N QGFQTVLV+ATMT AVQKLVDEE QGI HLRTSTLHKKIA+ARHDFIKLSG
Sbjct: 293 QRALKTNDQGFQTVLVTATMTMAVQKLVDEEFQGIEHLRTSTLHKKIANARHDFIKLSGG 352
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
E+KLEALLQVLEPSL+KG+KVMVFCNTLNSSRAVDH+L+ENQISTVNYHGEVPA++RVEN
Sbjct: 353 EDKLEALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHYLSENQISTVNYHGEVPAEQRVEN 412
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
L KFK+E+GDCPTLVCTDLAARGLDLDVDHV+MFDFP NSIDYLHRTGRTARMGAKGKVT
Sbjct: 413 LKKFKDEEGDCPTLVCTDLAARGLDLDVDHVVMFDFPKNSIDYLHRTGRTARMGAKGKVT 472
Query: 301 SLVAKKDVLLADRIEEAIRKNES 323
SLV++KD +LA RIEEA+R NES
Sbjct: 473 SLVSRKDQMLAARIEEAMRNNES 495
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Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q9VHP0|DDX3_DROME ATP-dependent RNA helicase bel OS=Drosophila melanogaster GN=bel PE=1 SV=1 | Back alignment and function description |
|---|
Score = 162 bits (409), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 106/299 (35%), Positives = 154/299 (51%), Gaps = 19/299 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q+F AK ++ +R R ++ GG Q L+ ++V TPGR
Sbjct: 379 PLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPGR 438
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ I G + +I++LVLDEAD M D GF P IR+ + L P GQ QT++ S
Sbjct: 439 LEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLN---MPPTGQ-RQTLMFS 494
Query: 138 ATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLE-- 192
AT K +Q+L + L R + + I I +K LL +L
Sbjct: 495 ATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQT----ILWVYEPDKRSYLLDLLSSI 550
Query: 193 ---PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
P +K + ++F T + +++ FL + + HG+ +ER E L F++ G
Sbjct: 551 RDGPEYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRS--G 608
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
DCP LV T +AARGLD+ V HVI FD P + +Y+HR GRT RMG G TS +K+
Sbjct: 609 DCPILVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEKN 667
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ATP-dependent RNA helicase that is essential and required for cellular function, larval growth, and for male and female fertility. Also required for RNA interference (RNAi), double-stranded RNA induces potent and specific gene silencing, by acting downstream of dsRNA internalization. RNAi is mediated by the RNA-induced silencing complex (RISC), a sequence-specific, multicomponent nuclease that destroys or silences messenger RNAs homologous to the silencing trigger. Drosophila melanogaster (taxid: 7227) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q5B0J9|DBP2_EMENI ATP-dependent RNA helicase dbp2 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=dbp2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 162 bits (409), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 155/290 (53%), Gaps = 18/290 (6%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++L PTREL+ Q+ +R R+T V GG PQ L+ +++ + TPGR
Sbjct: 214 PIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGR 273
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + YLVLDEAD M D GF P IRK + + +P+ QT + S
Sbjct: 274 LIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQI-----RPD---RQTCMWS 325
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARH---DFIKLSGSENKLEALLQVLEPS 194
AT K V++L + + ++ SA H +++ K + +++ LE
Sbjct: 326 ATWPKEVRQLASDFLNNYIQVNIGSMD---LSANHRITQIVEVISEFEKRDRMIKHLEKI 382
Query: 195 L-SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+ ++GNK +VF T + + FL ++ ++ HG+ QER LN+FK G P
Sbjct: 383 MENRGNKCLVFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKT--GKSPI 440
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
+V TD+A+RG+D+ D+ HVI +D+P NS DY+HR GRT R GAKG +
Sbjct: 441 MVATDVASRGIDVRDITHVINYDYPNNSEDYVHRIGRTGRAGAKGTAITF 490
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ATP-dependent RNA helicase involved nonsense-mediated mRNA decay and ribosome biogenesis through rRNA processing. Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q2U070|DBP2_ASPOR ATP-dependent RNA helicase dbp2 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=dbp2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 161 bits (407), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 102/293 (34%), Positives = 153/293 (52%), Gaps = 24/293 (8%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q+ +R R+T V GG PQ L+ +++ + TPGR
Sbjct: 204 PIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGR 263
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + YLVLDEAD M D GF P IRK + + +P+ QT + S
Sbjct: 264 LIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQI-----RPDR---QTCMWS 315
Query: 138 ATMTKAVQKLVDEECQ-----GIAHLRTSTLHK--KIASARHDFIKLSGSENKLEALLQV 190
AT K V++L + I + S H+ +I DF K LE +++
Sbjct: 316 ATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLEKIME- 374
Query: 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
++GNK ++F T + + FL ++ ++ HG+ QER LN+FK G
Sbjct: 375 -----NRGNKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKT--GK 427
Query: 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
P +V TD+A+RG+D+ D+ HV+ +D+P NS DY+HR GRT R GAKG +
Sbjct: 428 SPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITF 480
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ATP-dependent RNA helicase involved nonsense-mediated mRNA decay and ribosome biogenesis through rRNA processing. Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|A1DGZ7|DBP2_NEOFI ATP-dependent RNA helicase dbp2 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dbp2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 161 bits (407), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 102/298 (34%), Positives = 155/298 (52%), Gaps = 24/298 (8%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++L PTREL+ Q+ +R R+T V GG PQ L+ +++ + TPGR
Sbjct: 193 PIVLILAPTRELAVQIQTEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGR 252
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + YLVLDEAD M D GF P IRK + + +P+ QT + S
Sbjct: 253 LIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQI-----RPD---RQTCMWS 304
Query: 138 ATMTKAVQKLV-----DEECQGIAHLRTSTLHK--KIASARHDFIKLSGSENKLEALLQV 190
AT K V++L D I + S H+ +I DF K LE +++
Sbjct: 305 ATWPKEVRQLATDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLEKIME- 363
Query: 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
++GNK ++F T + + FL ++ ++ HG+ QER LN+FK G
Sbjct: 364 -----NRGNKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKT--GK 416
Query: 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
P +V TD+A+RG+D+ D+ HV+ +D+P NS DY+HR GRT R GAKG + ++
Sbjct: 417 SPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITFFTTEN 474
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ATP-dependent RNA helicase involved nonsense-mediated mRNA decay and ribosome biogenesis through rRNA processing. Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) (taxid: 331117) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|A4RHF1|DED1_MAGO7 ATP-dependent RNA helicase DED1 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) GN=DED1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 160 bits (406), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 97/291 (33%), Positives = 150/291 (51%), Gaps = 9/291 (3%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +++L PTREL Q++ ++ ++ + R +V GG + Q + D++V TPGR
Sbjct: 275 PTSLILAPTRELVSQIYDESRKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGR 334
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ IE G + +IKYLVLDEAD M D GF P IR+ + PN Q QT++ S
Sbjct: 335 LVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIV----EGEDMPNVQDRQTLMFS 390
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK 197
AT +Q+L + + L + + +++ ++K+ LL +L S
Sbjct: 391 ATFPGYIQQLARDFLKDYIFLSVGRVGSTSENITQRVMEVKHRDDKISHLLDLL--STHG 448
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
G ++F T ++ + FL + + HG+ +ER L F+ G CP LV T
Sbjct: 449 GGLTLIFVETKRNADELSDFLQNQNLPATSIHGDRTQRERERALEMFRT--GRCPILVAT 506
Query: 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
+AARGLD+ +V HVI +D P + DY+HR GRT R G G T+ KD
Sbjct: 507 AVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFDMKD 557
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ATP-binding RNA helicase involved in translation initiation. Remodels RNA in response to ADP and ATP concentrations by facilitating disruption, but also formation of RNA duplexes. Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 / FGSC 8958) (taxid: 242507) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|A1C6C4|DBP2_ASPCL ATP-dependent RNA helicase dbp2 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=dbp2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 160 bits (404), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 152/293 (51%), Gaps = 24/293 (8%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q+ +R R+T V GG PQ L+ +++ + TPGR
Sbjct: 199 PIVLVLAPTRELAVQIQTEITKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGR 258
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + YLVLDEAD M D GF P IRK + + +P+ QT + S
Sbjct: 259 LIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQI-----RPD---RQTCMWS 310
Query: 138 ATMTKAVQKLVDEECQ-----GIAHLRTSTLHK--KIASARHDFIKLSGSENKLEALLQV 190
AT K V++L + I + S H+ +I DF K LE +++
Sbjct: 311 ATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLEKIME- 369
Query: 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
+ NK+++F T + + FL ++ ++ HG+ QER LN+FK G
Sbjct: 370 -----DRSNKILIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKA--GK 422
Query: 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
P +V TD+A+RG+D+ D+ HV+ +D+P NS DY+HR GRT R GAKG +
Sbjct: 423 SPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYIHRIGRTGRAGAKGTAITF 475
|
ATP-dependent RNA helicase involved nonsense-mediated mRNA decay and ribosome biogenesis through rRNA processing. Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) (taxid: 344612) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q2R1M8|RH52C_ORYSJ DEAD-box ATP-dependent RNA helicase 52C OS=Oryza sativa subsp. japonica GN=Os11g0599500 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 159 bits (402), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 100/309 (32%), Positives = 156/309 (50%), Gaps = 11/309 (3%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P A++L PTRELS Q+ A+ S+ R + GG + Q L +D++V TPGR
Sbjct: 236 PLALILSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGR 295
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E + I+YL LDEAD M D GF P +R+ + + P QT+L S
Sbjct: 296 LVDLLERARVSLQSIRYLALDEADRMLDMGFEPQVRRIV----EQMDMPPPGARQTMLFS 351
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKK--IASARHDFIKLSGSENKLEALLQVLEPSL 195
AT K +Q++ + + L + + R +F++ + + L LL S
Sbjct: 352 ATFPKEIQRMASDFLENYIFLAVGRVGSSTDLIVQRVEFVQEADKRSHLMDLLHAQRDSA 411
Query: 196 SKGNK--VMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+ G +VF T + +++H+L N + HG+ QER L FK+ G P
Sbjct: 412 TPGKPTLTLVFVETKRGADSLEHWLCMNGFPATSIHGDRNQQEREYALRSFKS--GHTPI 469
Query: 254 LVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
LV TD+AARGLD+ V HV+ FD P + DY+HR GRT R G G T+ + + +A
Sbjct: 470 LVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNSSMAR 529
Query: 313 RIEEAIRKN 321
+ E ++++
Sbjct: 530 SLAELMQES 538
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|A2QC74|DBP2_ASPNC ATP-dependent RNA helicase dbp2 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=dbp2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 159 bits (402), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 100/293 (34%), Positives = 152/293 (51%), Gaps = 24/293 (8%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++L PTREL+ Q+ +R R+T V GG PQ L+ +++ + TPGR
Sbjct: 211 PIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGR 270
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + YLVLDEAD M D GF P IRK + + +P+ QT + S
Sbjct: 271 LIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQI-----RPDR---QTCMWS 322
Query: 138 ATMTKAVQKLVDEECQ-----GIAHLRTSTLHK--KIASARHDFIKLSGSENKLEALLQV 190
AT K V++L + I + S H+ +I DF K LE +++
Sbjct: 323 ATWPKEVRQLASDFLNDYIQVNIGSMDLSANHRITQIVEVVSDFEKRDKMIKHLEKIME- 381
Query: 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
++ NK ++F T + + FL ++ ++ HG+ QER LN+FK G
Sbjct: 382 -----NRANKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKT--GK 434
Query: 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
P +V TD+A+RG+D+ D+ HV+ +D+P NS DY+HR GRT R GAKG +
Sbjct: 435 SPIMVATDVASRGIDVRDITHVLNYDYPNNSEDYVHRIGRTGRAGAKGTAITF 487
|
ATP-dependent RNA helicase involved nonsense-mediated mRNA decay and ribosome biogenesis through rRNA processing. Aspergillus niger (strain CBS 513.88 / FGSC A1513) (taxid: 425011) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 323 | ||||||
| 225463083 | 635 | PREDICTED: DEAD-box ATP-dependent RNA he | 1.0 | 0.508 | 0.925 | 1e-177 | |
| 297739373 | 505 | unnamed protein product [Vitis vinifera] | 1.0 | 0.639 | 0.925 | 1e-176 | |
| 224085245 | 573 | predicted protein [Populus trichocarpa] | 1.0 | 0.563 | 0.907 | 1e-174 | |
| 242051801 | 612 | hypothetical protein SORBIDRAFT_03g00352 | 1.0 | 0.527 | 0.879 | 1e-172 | |
| 115434952 | 625 | Os01g0184500 [Oryza sativa Japonica Grou | 1.0 | 0.516 | 0.888 | 1e-172 | |
| 212275171 | 613 | uncharacterized protein LOC100191518 [Ze | 1.0 | 0.526 | 0.876 | 1e-171 | |
| 449443857 | 634 | PREDICTED: DEAD-box ATP-dependent RNA he | 1.0 | 0.509 | 0.891 | 1e-170 | |
| 449510866 | 634 | PREDICTED: DEAD-box ATP-dependent RNA he | 1.0 | 0.509 | 0.891 | 1e-170 | |
| 357125633 | 625 | PREDICTED: DEAD-box ATP-dependent RNA he | 1.0 | 0.516 | 0.882 | 1e-170 | |
| 218187644 | 618 | hypothetical protein OsI_00680 [Oryza sa | 0.984 | 0.514 | 0.873 | 1e-168 |
| >gi|225463083|ref|XP_002263640.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 625 bits (1612), Expect = e-177, Method: Compositional matrix adjust.
Identities = 299/323 (92%), Positives = 310/323 (95%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
LLR DEA+ GVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ
Sbjct: 180 LLRRDEALSGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 239
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
EDSLN PIDMVVGTPGR+LQHIE+GNMVYG+IKYLVLDEADTMFDRGFGPDIRKFL PLK
Sbjct: 240 EDSLNIPIDMVVGTPGRVLQHIEEGNMVYGEIKYLVLDEADTMFDRGFGPDIRKFLAPLK 299
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
NRASK + QGFQTVLV+ATMTKAVQKL+DEE QGI HLRTSTLHKKIASARHDFIKLSGS
Sbjct: 300 NRASKSDDQGFQTVLVTATMTKAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKLSGS 359
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
ENKLEALLQVLEPSL+KGNKVMVFCNTLNSSRAVDHFL ENQI TVNYHGEVPA++RVEN
Sbjct: 360 ENKLEALLQVLEPSLAKGNKVMVFCNTLNSSRAVDHFLGENQIFTVNYHGEVPAEQRVEN 419
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
L KFK EDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT
Sbjct: 420 LKKFKTEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 479
Query: 301 SLVAKKDVLLADRIEEAIRKNES 323
SLVAKKD+LLA RIEEAIRKNES
Sbjct: 480 SLVAKKDLLLATRIEEAIRKNES 502
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297739373|emb|CBI29363.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 624 bits (1610), Expect = e-176, Method: Compositional matrix adjust.
Identities = 299/323 (92%), Positives = 310/323 (95%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
LLR DEA+ GVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ
Sbjct: 50 LLRRDEALSGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 109
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
EDSLN PIDMVVGTPGR+LQHIE+GNMVYG+IKYLVLDEADTMFDRGFGPDIRKFL PLK
Sbjct: 110 EDSLNIPIDMVVGTPGRVLQHIEEGNMVYGEIKYLVLDEADTMFDRGFGPDIRKFLAPLK 169
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
NRASK + QGFQTVLV+ATMTKAVQKL+DEE QGI HLRTSTLHKKIASARHDFIKLSGS
Sbjct: 170 NRASKSDDQGFQTVLVTATMTKAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKLSGS 229
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
ENKLEALLQVLEPSL+KGNKVMVFCNTLNSSRAVDHFL ENQI TVNYHGEVPA++RVEN
Sbjct: 230 ENKLEALLQVLEPSLAKGNKVMVFCNTLNSSRAVDHFLGENQIFTVNYHGEVPAEQRVEN 289
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
L KFK EDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT
Sbjct: 290 LKKFKTEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 349
Query: 301 SLVAKKDVLLADRIEEAIRKNES 323
SLVAKKD+LLA RIEEAIRKNES
Sbjct: 350 SLVAKKDLLLATRIEEAIRKNES 372
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224085245|ref|XP_002307523.1| predicted protein [Populus trichocarpa] gi|222856972|gb|EEE94519.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 616 bits (1589), Expect = e-174, Method: Compositional matrix adjust.
Identities = 293/323 (90%), Positives = 309/323 (95%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
LLR DEA+LG LMKPRRPRAVVLCPTRELSEQVFRVAKSI HHARFRSTMVSGGGR+RPQ
Sbjct: 177 LLRRDEALLGRLMKPRRPRAVVLCPTRELSEQVFRVAKSIGHHARFRSTMVSGGGRMRPQ 236
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
EDSLNNPIDMVVGTPGR+LQHI+DGNMVYGDIKYLVLDEADTMFDRGFGPDI KFL PLK
Sbjct: 237 EDSLNNPIDMVVGTPGRVLQHIQDGNMVYGDIKYLVLDEADTMFDRGFGPDIHKFLGPLK 296
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
NR SK +GQGFQT+LV+ATMTKAVQKL+DEE QGI HLRTSTLHKKIASARHDFIKLSGS
Sbjct: 297 NRTSKSDGQGFQTILVTATMTKAVQKLIDEEFQGIEHLRTSTLHKKIASARHDFIKLSGS 356
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
ENKLEALLQVLEPSL+KGN+VMVFCNTLNSSRA DHFL ENQISTVNYHGEVPA++RVEN
Sbjct: 357 ENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAADHFLAENQISTVNYHGEVPAEQRVEN 416
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
LNKFK++DGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT
Sbjct: 417 LNKFKSDDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 476
Query: 301 SLVAKKDVLLADRIEEAIRKNES 323
SLVA+KD LA RIEEA+RKNES
Sbjct: 477 SLVARKDQQLAARIEEAMRKNES 499
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242051801|ref|XP_002455046.1| hypothetical protein SORBIDRAFT_03g003520 [Sorghum bicolor] gi|241927021|gb|EES00166.1| hypothetical protein SORBIDRAFT_03g003520 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust.
Identities = 284/323 (87%), Positives = 307/323 (95%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
LLR DEAMLG+ MKPRRPRAVVLCPTREL+EQV+RVAKSISHHARFRSTMVSGG RLRPQ
Sbjct: 155 LLRRDEAMLGISMKPRRPRAVVLCPTRELTEQVYRVAKSISHHARFRSTMVSGGTRLRPQ 214
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
EDSLN P+DMVVGTPGRIL HI+DGNMVYGDIKYLVLDEADTMFD+GFGPDIRKFL PLK
Sbjct: 215 EDSLNMPVDMVVGTPGRILDHIKDGNMVYGDIKYLVLDEADTMFDQGFGPDIRKFLAPLK 274
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
NRA+KP QGFQTVLV+ATMTKAVQKL+DEE +GI HLRTS+ K++++ARHDFIKLSG+
Sbjct: 275 NRAAKPGDQGFQTVLVTATMTKAVQKLIDEEFEGIVHLRTSSFQKRVSTARHDFIKLSGA 334
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
ENKLEALLQVLEPSL+KGNKVMVFCNTLNSSRAVDHFL ENQISTVNYHGEVPA+ERVEN
Sbjct: 335 ENKLEALLQVLEPSLAKGNKVMVFCNTLNSSRAVDHFLTENQISTVNYHGEVPAEERVEN 394
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
LNKF+NE+GDCPTLVCTDLAARGLDLDVDHVIMFDFP NSIDYLHRTGRTARMGAKGKVT
Sbjct: 395 LNKFRNEEGDCPTLVCTDLAARGLDLDVDHVIMFDFPSNSIDYLHRTGRTARMGAKGKVT 454
Query: 301 SLVAKKDVLLADRIEEAIRKNES 323
S+VAKKDV LA RIEEA++KNES
Sbjct: 455 SIVAKKDVALATRIEEAMKKNES 477
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115434952|ref|NP_001042234.1| Os01g0184500 [Oryza sativa Japonica Group] gi|75321764|sp|Q5VRY0.1|RH39_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 39 gi|55295927|dbj|BAD67795.1| putative VASA [Oryza sativa Japonica Group] gi|113531765|dbj|BAF04148.1| Os01g0184500 [Oryza sativa Japonica Group] gi|222617875|gb|EEE54007.1| hypothetical protein OsJ_00660 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust.
Identities = 287/323 (88%), Positives = 307/323 (95%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
LLR DEAMLG+ MKPRRPRAVVLCPTREL+EQVFRVAKSISHHARFRSTMVSGG R+RPQ
Sbjct: 171 LLRRDEAMLGMSMKPRRPRAVVLCPTRELTEQVFRVAKSISHHARFRSTMVSGGSRIRPQ 230
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
EDSLN P+DMVVGTPGRIL HI+DGNMVYGDIKYLVLDEADTMFD+GFGPDIRKFL PLK
Sbjct: 231 EDSLNMPVDMVVGTPGRILDHIKDGNMVYGDIKYLVLDEADTMFDQGFGPDIRKFLAPLK 290
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
NRA+KP QGFQTVLV+ATMTKAVQKL+DEE +GI HLRT+T K++A+ARHDFIKLSGS
Sbjct: 291 NRAAKPGDQGFQTVLVTATMTKAVQKLIDEEFEGIVHLRTTTFQKRVATARHDFIKLSGS 350
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
ENKLEALLQVLEPSL+KGNKVMVFCNTLNSSRAVDHFL ENQISTVNYHGEVPA+ERVEN
Sbjct: 351 ENKLEALLQVLEPSLAKGNKVMVFCNTLNSSRAVDHFLTENQISTVNYHGEVPAEERVEN 410
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
LNKF+NE+GDCPTLVCTDLAARGLDLDVDHVIMFDFP NSIDYLHRTGRTARMGAKGKVT
Sbjct: 411 LNKFRNEEGDCPTLVCTDLAARGLDLDVDHVIMFDFPSNSIDYLHRTGRTARMGAKGKVT 470
Query: 301 SLVAKKDVLLADRIEEAIRKNES 323
SLVAKKDV LA RIEEA++KNES
Sbjct: 471 SLVAKKDVTLATRIEEAMKKNES 493
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|212275171|ref|NP_001130422.1| uncharacterized protein LOC100191518 [Zea mays] gi|194689078|gb|ACF78623.1| unknown [Zea mays] gi|224029523|gb|ACN33837.1| unknown [Zea mays] gi|413942755|gb|AFW75404.1| putative DEAD-box ATP-dependent RNA helicase family protein [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust.
Identities = 283/323 (87%), Positives = 307/323 (95%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
LLR DEAMLG+ MKPRRPRAVVLCPTREL+EQV+RVAKSISHHARFRSTMVSGG RLRPQ
Sbjct: 156 LLRRDEAMLGMSMKPRRPRAVVLCPTRELTEQVYRVAKSISHHARFRSTMVSGGTRLRPQ 215
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
EDSLN P+DMVVGTPGRIL HI+DGNMVYGDIKYLVLDEADTMFD+GFGPDIRKFL PLK
Sbjct: 216 EDSLNMPVDMVVGTPGRILDHIKDGNMVYGDIKYLVLDEADTMFDQGFGPDIRKFLAPLK 275
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
NRA+KP+ QGFQTVLV+ATMTKAVQKL+DEE +GI HLRTS+ K++++ARHDFIKLSG+
Sbjct: 276 NRAAKPDDQGFQTVLVTATMTKAVQKLIDEEFEGIVHLRTSSFQKRVSTARHDFIKLSGA 335
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
ENKLEALLQVLEPSL+KGNKVMVFCNTLNSSRAVDHFL EN ISTVNYHGEVPA+ERVEN
Sbjct: 336 ENKLEALLQVLEPSLAKGNKVMVFCNTLNSSRAVDHFLTENHISTVNYHGEVPAEERVEN 395
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
LNKF+NE+GDCPTLVCTDLAARGLDLDVDHVIMFDFP NSIDYLHRTGRTARMGAKGKVT
Sbjct: 396 LNKFRNEEGDCPTLVCTDLAARGLDLDVDHVIMFDFPSNSIDYLHRTGRTARMGAKGKVT 455
Query: 301 SLVAKKDVLLADRIEEAIRKNES 323
S+VAKKDV LA RIEEA++KNES
Sbjct: 456 SIVAKKDVALATRIEEAMKKNES 478
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449443857|ref|XP_004139692.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 603 bits (1555), Expect = e-170, Method: Compositional matrix adjust.
Identities = 288/323 (89%), Positives = 304/323 (94%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
LLR DE + G LMKPRRPRAVVLCPTRELSEQVFRV+KSISHHARFRSTMVSGGGRLRPQ
Sbjct: 181 LLRRDEELFGRLMKPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGRLRPQ 240
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
EDSL+NPIDMVVGTPGR+LQHIE GNMVYGDIKYLVLDEADTMFD GFGPDIRKF+ PLK
Sbjct: 241 EDSLSNPIDMVVGTPGRVLQHIEAGNMVYGDIKYLVLDEADTMFDHGFGPDIRKFIGPLK 300
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
+RAS + QGFQT+LV+ATMTKAVQKL+DEE QGI HLRTSTLHKKIASARHDFIKLSGS
Sbjct: 301 HRASSHDDQGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKLSGS 360
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
ENKLEALLQVLEPSL+KGN+VMVFCNTLNSSRAVDHFL ENQISTVNYHGEVPAQ+RVEN
Sbjct: 361 ENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPAQKRVEN 420
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
L KFK++D DCPTLVCTDLAARGLDLDVDHVIMFDFP NSIDYLHRTGRTARMGAKGKVT
Sbjct: 421 LKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSIDYLHRTGRTARMGAKGKVT 480
Query: 301 SLVAKKDVLLADRIEEAIRKNES 323
SLV KKD +LA RIEEAIRKNES
Sbjct: 481 SLVGKKDNILATRIEEAIRKNES 503
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449510866|ref|XP_004163791.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 603 bits (1555), Expect = e-170, Method: Compositional matrix adjust.
Identities = 288/323 (89%), Positives = 304/323 (94%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
LLR DE + G LMKPRRPRAVVLCPTRELSEQVFRV+KSISHHARFRSTMVSGGGRLRPQ
Sbjct: 181 LLRRDEELFGRLMKPRRPRAVVLCPTRELSEQVFRVSKSISHHARFRSTMVSGGGRLRPQ 240
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
EDSL+NPIDMVVGTPGR+LQHIE GNMVYGDIKYLVLDEADTMFD GFGPDIRKF+ PLK
Sbjct: 241 EDSLSNPIDMVVGTPGRVLQHIEAGNMVYGDIKYLVLDEADTMFDHGFGPDIRKFIGPLK 300
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
+RAS + QGFQT+LV+ATMTKAVQKL+DEE QGI HLRTSTLHKKIASARHDFIKLSGS
Sbjct: 301 HRASSHDDQGFQTILVTATMTKAVQKLIDEEFQGIVHLRTSTLHKKIASARHDFIKLSGS 360
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
ENKLEALLQVLEPSL+KGN+VMVFCNTLNSSRAVDHFL ENQISTVNYHGEVPAQ+RVEN
Sbjct: 361 ENKLEALLQVLEPSLAKGNRVMVFCNTLNSSRAVDHFLGENQISTVNYHGEVPAQKRVEN 420
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
L KFK++D DCPTLVCTDLAARGLDLDVDHVIMFDFP NSIDYLHRTGRTARMGAKGKVT
Sbjct: 421 LKKFKSDDADCPTLVCTDLAARGLDLDVDHVIMFDFPSNSIDYLHRTGRTARMGAKGKVT 480
Query: 301 SLVAKKDVLLADRIEEAIRKNES 323
SLV KKD +LA RIEEAIRKNES
Sbjct: 481 SLVGKKDNILATRIEEAIRKNES 503
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357125633|ref|XP_003564496.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 39-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 602 bits (1552), Expect = e-170, Method: Compositional matrix adjust.
Identities = 285/323 (88%), Positives = 305/323 (94%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
LLRHDEA LG+ +KPRRPRAVVLCPTREL+EQVFRVAKSISHHARFRSTMVSGG RLRPQ
Sbjct: 152 LLRHDEATLGMSLKPRRPRAVVLCPTRELTEQVFRVAKSISHHARFRSTMVSGGTRLRPQ 211
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
EDSLN P+DMVVGTPGRIL HI++GN+VYGDIKYLVLDEADTMFD+GFG DIRKFL PLK
Sbjct: 212 EDSLNMPVDMVVGTPGRILDHIKEGNIVYGDIKYLVLDEADTMFDQGFGEDIRKFLAPLK 271
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
NRASKP QGFQTVLVSATMTKAVQKL+DEE +GI HLRTST K+IA+ARHDFIKLSGS
Sbjct: 272 NRASKPGDQGFQTVLVSATMTKAVQKLIDEEFEGIVHLRTSTFQKRIATARHDFIKLSGS 331
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
ENKLEALLQVLEPSL+KGNKVMVFCNTLNSSRAVDHFL ENQISTVNYHGEVPA+ERVEN
Sbjct: 332 ENKLEALLQVLEPSLAKGNKVMVFCNTLNSSRAVDHFLTENQISTVNYHGEVPAEERVEN 391
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
LNKF+NE+GDCPTLVCTDLAARGLDL+VDHVIMFDFP NSIDYLHRTGRTARMGAKGKVT
Sbjct: 392 LNKFRNEEGDCPTLVCTDLAARGLDLEVDHVIMFDFPKNSIDYLHRTGRTARMGAKGKVT 451
Query: 301 SLVAKKDVLLADRIEEAIRKNES 323
SLV KKDV LA RIE+A++KNES
Sbjct: 452 SLVTKKDVPLATRIEDAMKKNES 474
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|218187644|gb|EEC70071.1| hypothetical protein OsI_00680 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 597 bits (1538), Expect = e-168, Method: Compositional matrix adjust.
Identities = 282/323 (87%), Positives = 302/323 (93%), Gaps = 5/323 (1%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
LLR DEAMLG+ MKPRRPRAVVLCPTREL+EQVFRVAKSISHHARFRSTMVSGG R+RPQ
Sbjct: 169 LLRRDEAMLGMSMKPRRPRAVVLCPTRELTEQVFRVAKSISHHARFRSTMVSGGSRIRPQ 228
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
EDSLN P+DMVVGTPGRIL HI+DGNMVYGDIKYLVLDEADTMFD+GFGPDIRKFL PLK
Sbjct: 229 EDSLNMPVDMVVGTPGRILDHIKDGNMVYGDIKYLVLDEADTMFDQGFGPDIRKFLAPLK 288
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
NRA+KP QGFQTVLV+ATMTKAVQKL+DEE +GI HLRT+T K++A+ARHDFIKLSGS
Sbjct: 289 NRAAKPGDQGFQTVLVTATMTKAVQKLIDEEFEGIVHLRTTTFQKRVATARHDFIKLSGS 348
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
ENKLEALLQVLEPSL+KGNKVMVFCNTLNSSRAVDHFL ENQISTVNYHGEVPA+ERVEN
Sbjct: 349 ENKLEALLQVLEPSLAKGNKVMVFCNTLNSSRAVDHFLTENQISTVNYHGEVPAEERVEN 408
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
LNKF+NE+GDCPTLVCTDLAARGLDLDVDHVIMFDFP NSIDYLHRTGRTARMGAKG
Sbjct: 409 LNKFRNEEGDCPTLVCTDLAARGLDLDVDHVIMFDFPSNSIDYLHRTGRTARMGAKG--- 465
Query: 301 SLVAKKDVLLADRIEEAIRKNES 323
VAKKDV LA RIEEA++KNES
Sbjct: 466 --VAKKDVTLATRIEEAMKKNES 486
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 323 | ||||||
| TAIR|locus:2118509 | 621 | RH39 "RH39" [Arabidopsis thali | 1.0 | 0.520 | 0.854 | 3.5e-146 | |
| UNIPROTKB|Q3AFI3 | 430 | CHY_0229 "ATP-dependent RNA he | 0.916 | 0.688 | 0.345 | 2e-40 | |
| TIGR_CMR|CHY_0229 | 430 | CHY_0229 "ATP-dependent RNA he | 0.916 | 0.688 | 0.345 | 2e-40 | |
| ASPGD|ASPL0000006660 | 563 | AN5931 [Emericella nidulans (t | 0.826 | 0.474 | 0.350 | 1.6e-38 | |
| FB|FBgn0263231 | 798 | bel "belle" [Drosophila melano | 0.925 | 0.374 | 0.334 | 2.6e-38 | |
| UNIPROTKB|Q83DM8 | 420 | rhlE "ATP-dependent RNA helica | 0.913 | 0.702 | 0.337 | 5.5e-38 | |
| TIGR_CMR|CBU_0670 | 420 | CBU_0670 "ATP-dependent RNA he | 0.913 | 0.702 | 0.337 | 5.5e-38 | |
| TIGR_CMR|GSU_0522 | 443 | GSU_0522 "ATP-dependent RNA he | 0.904 | 0.659 | 0.339 | 8.9e-38 | |
| UNIPROTKB|F1NM08 | 595 | DDX5 "Uncharacterized protein" | 0.897 | 0.487 | 0.337 | 9.2e-38 | |
| UNIPROTKB|F1NXI3 | 603 | DDX5 "Uncharacterized protein" | 0.897 | 0.480 | 0.337 | 1.1e-37 |
| TAIR|locus:2118509 RH39 "RH39" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1428 (507.7 bits), Expect = 3.5e-146, P = 3.5e-146
Identities = 276/323 (85%), Positives = 298/323 (92%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
L+R DEA LG KPRRPR VVLCPTRELSEQV+RVAKSISHHARFRS +VSGG R+RPQ
Sbjct: 173 LMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSRIRPQ 232
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK 120
EDSLNN IDMVVGTPGRILQHIE+GNMVYGDI YLVLDEADTMFDRGFGP+IRKFL PL
Sbjct: 233 EDSLNNAIDMVVGTPGRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEIRKFLAPLN 292
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGS 180
RA K N QGFQTVLV+ATMT AVQKLVDEE QGI HLRTSTLHKKIA+ARHDFIKLSG
Sbjct: 293 QRALKTNDQGFQTVLVTATMTMAVQKLVDEEFQGIEHLRTSTLHKKIANARHDFIKLSGG 352
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
E+KLEALLQVLEPSL+KG+KVMVFCNTLNSSRAVDH+L+ENQISTVNYHGEVPA++RVEN
Sbjct: 353 EDKLEALLQVLEPSLAKGSKVMVFCNTLNSSRAVDHYLSENQISTVNYHGEVPAEQRVEN 412
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
L KFK+E+GDCPTLVCTDLAARGLDLDVDHV+MFDFP NSIDYLHRTGRTARMGAKGKVT
Sbjct: 413 LKKFKDEEGDCPTLVCTDLAARGLDLDVDHVVMFDFPKNSIDYLHRTGRTARMGAKGKVT 472
Query: 301 SLVAKKDVLLADRIEEAIRKNES 323
SLV++KD +LA RIEEA+R NES
Sbjct: 473 SLVSRKDQMLAARIEEAMRNNES 495
|
|
| UNIPROTKB|Q3AFI3 CHY_0229 "ATP-dependent RNA helicase, DEAD box family" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
Identities = 107/310 (34%), Positives = 161/310 (51%)
Query: 12 LMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMV 71
+ + ++ + +++ PTREL+ QV + + + R+ V GG + Q L ++++
Sbjct: 64 IQRGKKAQVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQGVEVI 123
Query: 72 VGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGF 131
VGTPGRIL HI +IK ++LDEAD M D GF DI L L NR
Sbjct: 124 VGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQ-------- 175
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL 191
QT+L SAT+ ++ ++ + G ++ K + + R + +L +E K+E L+ +L
Sbjct: 176 QTLLFSATLPAPIKTIIKKFLGGYKTVKLVGREKTVPAIRQVYYELPETE-KIEGLVSIL 234
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
L + +VFC T V LN + HG++ +ER + + FK G
Sbjct: 235 NSELPI--QAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKA--GKT 290
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
LV TD+AARGLD+ DV HVI FD P N Y+HR GRT R G +GK +L+ ++ L
Sbjct: 291 ELLVATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERKL 350
Query: 311 ADRIEEAIRK 320
IEEAI K
Sbjct: 351 LKAIEEAINK 360
|
|
| TIGR_CMR|CHY_0229 CHY_0229 "ATP-dependent RNA helicase, DEAD box family" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
Identities = 107/310 (34%), Positives = 161/310 (51%)
Query: 12 LMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMV 71
+ + ++ + +++ PTREL+ QV + + + R+ V GG + Q L ++++
Sbjct: 64 IQRGKKAQVLIVTPTRELALQVADEVAKLGKYLKVRALAVYGGQAIERQIRGLRQGVEVI 123
Query: 72 VGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGF 131
VGTPGRIL HI +IK ++LDEAD M D GF DI L L NR
Sbjct: 124 VGTPGRILDHIGRKTFPAAEIKIVILDEADEMLDMGFIDDIEAILNTLTNRQ-------- 175
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL 191
QT+L SAT+ ++ ++ + G ++ K + + R + +L +E K+E L+ +L
Sbjct: 176 QTLLFSATLPAPIKTIIKKFLGGYKTVKLVGREKTVPAIRQVYYELPETE-KIEGLVSIL 234
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
L + +VFC T V LN + HG++ +ER + + FK G
Sbjct: 235 NSELPI--QAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGDMSQRERTQTIKSFKA--GKT 290
Query: 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
LV TD+AARGLD+ DV HVI FD P N Y+HR GRT R G +GK +L+ ++ L
Sbjct: 291 ELLVATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAGREGKAITLINYRERKL 350
Query: 311 ADRIEEAIRK 320
IEEAI K
Sbjct: 351 LKAIEEAINK 360
|
|
| ASPGD|ASPL0000006660 AN5931 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
Identities = 100/285 (35%), Positives = 154/285 (54%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++L PTREL+ Q+ +R R+T V GG PQ L+ +++ + TPGR
Sbjct: 214 PIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGR 273
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + YLVLDEAD M D GF P IRK + ++ P+ Q T + S
Sbjct: 274 LIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIR-----PDRQ---TCMWS 325
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARH---DFIKLSGSENKLEALLQVLEPS 194
AT K V++L + + ++ SA H +++ K + +++ LE
Sbjct: 326 ATWPKEVRQLASDFLNNYIQVNIGSMD---LSANHRITQIVEVISEFEKRDRMIKHLEKI 382
Query: 195 L-SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+ ++GNK +VF T + + FL ++ ++ HG+ QER LN+FK G P
Sbjct: 383 MENRGNKCLVFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKT--GKSPI 440
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
+V TD+A+RG+D+ D+ HVI +D+P NS DY+HR GRT R GAKG
Sbjct: 441 MVATDVASRGIDVRDITHVINYDYPNNSEDYVHRIGRTGRAGAKG 485
|
|
| FB|FBgn0263231 bel "belle" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 418 (152.2 bits), Expect = 2.6e-38, P = 2.6e-38
Identities = 104/311 (33%), Positives = 161/311 (51%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+ Q+F AK ++ +R R ++ GG Q L+ ++V TPGR
Sbjct: 379 PLGLVLAPTRELATQIFEEAKKFAYRSRMRPAVLYGGNNTSEQMRELDRGCHLIVATPGR 438
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
+ I G + +I++LVLDEAD M D GF P IR+ + L P GQ QT++ S
Sbjct: 439 LEDMITRGKVGLENIRFLVLDEADRMLDMGFEPQIRRIVEQLN---MPPTGQR-QTLMFS 494
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENK---LEALLQVLE-P 193
AT K +Q+L + L + + + + + + L+ L + + P
Sbjct: 495 ATFPKQIQELASDFLSNYIFLAVGRVGSTSENITQTILWVYEPDKRSYLLDLLSSIRDGP 554
Query: 194 SLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+K + ++F T + +++ FL + + HG+ +ER E L F++ GDCP
Sbjct: 555 EYTKDSLTLIFVETKKGADSLEEFLYQCNHPVTSIHGDRTQKEREEALRCFRS--GDCPI 612
Query: 254 LVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV-LLA 311
LV T +AARGLD+ V HVI FD P + +Y+HR GRT RMG G TS +K+ + +
Sbjct: 613 LVATAVAARGLDIPHVKHVINFDLPSDVEEYVHRIGRTGRMGNLGVATSFFNEKNRNICS 672
Query: 312 DRIEEAIRKNE 322
D +E I +
Sbjct: 673 DLLELLIETKQ 683
|
|
| UNIPROTKB|Q83DM8 rhlE "ATP-dependent RNA helicase" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
Identities = 105/311 (33%), Positives = 164/311 (52%)
Query: 12 LMKPRRP--RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPID 69
L + +P RA++L PTREL+ QVF ++ + ++T+V GG ++PQ + L +D
Sbjct: 79 LQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQINHLRRGVD 138
Query: 70 MVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQ 129
++V TPGR+L + G + +++ VLDEAD M D GF PDIR+ L L P +
Sbjct: 139 ILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLL------PESR 192
Query: 130 GFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQ 189
Q +L SAT +K +++L D+ A + + + A+AR + + LL
Sbjct: 193 --QNLLFSATFSKEIKELTDKLLHSPALIEVA--RRNTAAARITHVVHPVDRQRKRELLS 248
Query: 190 VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
+ S +V+VF T + + + L + +S+ HG R+ L +FK G
Sbjct: 249 FMIGS-KNWRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQ--G 305
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
LV TD+AARGLD+D + HVI F+ P + DY+HR GRT R G SLV+ +V
Sbjct: 306 KIRVLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEV 365
Query: 309 LLADRIEEAIR 319
L IE+ ++
Sbjct: 366 RLLRDIEKLLQ 376
|
|
| TIGR_CMR|CBU_0670 CBU_0670 "ATP-dependent RNA helicase RhlE, putative" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
Identities = 105/311 (33%), Positives = 164/311 (52%)
Query: 12 LMKPRRP--RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPID 69
L + +P RA++L PTREL+ QVF ++ + ++T+V GG ++PQ + L +D
Sbjct: 79 LQRSAKPVIRALILTPTRELAVQVFECVRAYGKYLPLKATVVHGGVSIKPQINHLRRGVD 138
Query: 70 MVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQ 129
++V TPGR+L + G + +++ VLDEAD M D GF PDIR+ L L P +
Sbjct: 139 ILVATPGRLLDLVNQGVLNLSRVEFFVLDEADRMLDMGFLPDIRRILKLL------PESR 192
Query: 130 GFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQ 189
Q +L SAT +K +++L D+ A + + + A+AR + + LL
Sbjct: 193 --QNLLFSATFSKEIKELTDKLLHSPALIEVA--RRNTAAARITHVVHPVDRQRKRELLS 248
Query: 190 VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
+ S +V+VF T + + + L + +S+ HG R+ L +FK G
Sbjct: 249 FMIGS-KNWRQVLVFTRTKHGANRLSQQLESDGLSSAAIHGNKSQAARMRALTQFKQ--G 305
Query: 250 DCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308
LV TD+AARGLD+D + HVI F+ P + DY+HR GRT R G SLV+ +V
Sbjct: 306 KIRVLVATDVAARGLDIDKLPHVINFELPDAAKDYVHRVGRTGRASNDGVAISLVSGDEV 365
Query: 309 LLADRIEEAIR 319
L IE+ ++
Sbjct: 366 RLLRDIEKLLQ 376
|
|
| TIGR_CMR|GSU_0522 GSU_0522 "ATP-dependent RNA helicase RhlB" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 405 (147.6 bits), Expect = 8.9e-38, P = 8.9e-38
Identities = 104/306 (33%), Positives = 162/306 (52%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R PRA++L PTREL Q+ + A+ + H F + GG Q+++L D+VVGTP
Sbjct: 73 RHPRAIILAPTRELVVQIEKDAQVLGAHCGFTIQAIYGGVDYMKQKNALKEGADVVVGTP 132
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR++ +++ +I+ LV+DEAD MFD GF D+R F++ R P + Q ++
Sbjct: 133 GRLIDYLKQKVYSLKEIEMLVIDEADRMFDMGFIADLR-FIL----RRLPPYDKR-QNLM 186
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
SAT+ + V +L E + T + A + G + K LL +L
Sbjct: 187 FSATLNQRVMELA-YEFMNVPEKVAVTPEQMTAERVEQVLYHVGRKEKFPLLLGLLR--- 242
Query: 196 SKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
+G + M+F NT + +D LN N G+V ++R++ L FK+ G P +
Sbjct: 243 KEGMERTMIFVNTKREAEFLDERLNANDFPCRVISGDVEQRKRLKILEDFKS--GKLPIM 300
Query: 255 VCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
+ TD+A+RGL +D V HVI +D P ++ DY+HR GRTAR GA+GK S+ + +
Sbjct: 301 IATDVASRGLHIDGVSHVINYDLPQDAEDYVHRIGRTARAGAEGKAISMADEDGAFHLEA 360
Query: 314 IEEAIR 319
I E I+
Sbjct: 361 IHEYIK 366
|
|
| UNIPROTKB|F1NM08 DDX5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 406 (148.0 bits), Expect = 9.2e-38, P = 9.2e-38
Identities = 104/308 (33%), Positives = 162/308 (52%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA S R +ST + GG PQ L +++ + TPGR
Sbjct: 156 PICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 215
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + ++ P+ Q T++ S
Sbjct: 216 LIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQ---TLMWS 267
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSG---SENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K + L++++E
Sbjct: 268 ATWPKEVRQLAEDFLKEYVHINIGALE---LSANHNILQIVDVCHDVEKDDKLIRLMEEI 324
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 325 MSEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 382
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++ +
Sbjct: 383 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVN 442
Query: 313 RIEEAIRK 320
+ +R+
Sbjct: 443 DLISVLRE 450
|
|
| UNIPROTKB|F1NXI3 DDX5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 406 (148.0 bits), Expect = 1.1e-37, P = 1.1e-37
Identities = 104/308 (33%), Positives = 162/308 (52%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA S R +ST + GG PQ L +++ + TPGR
Sbjct: 164 PICLVLAPTRELAQQVQQVAAEYSRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 223
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G YLVLDEAD M D GF P IRK + ++ P+ Q T++ S
Sbjct: 224 LIDFLEAGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIR-----PDRQ---TLMWS 275
Query: 138 ATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSG---SENKLEALLQVLEPS 194
AT K V++L ++ + H+ L SA H+ +++ K + L++++E
Sbjct: 276 ATWPKEVRQLAEDFLKEYVHINIGALE---LSANHNILQIVDVCHDVEKDDKLIRLMEEI 332
Query: 195 LS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+S K NK +VF T + + + + HG+ QER LN+FK+ G P
Sbjct: 333 MSEKENKTIVFVETKRRCDDLTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKH--GKAPI 390
Query: 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312
L+ TD+A+RGLD+ DV VI +D+P +S DY+HR GRTAR G + ++ +
Sbjct: 391 LIATDVASRGLDVEDVKFVINYDYPNSSEDYIHRIGRTARSTKTGTAYTFFTPNNIKQVN 450
Query: 313 RIEEAIRK 320
+ +R+
Sbjct: 451 DLISVLRE 458
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q56X76 | RH39_ARATH | 3, ., 6, ., 4, ., 1, 3 | 0.8544 | 1.0 | 0.5201 | yes | no |
| Q5VRY0 | RH39_ORYSJ | 3, ., 6, ., 4, ., 1, 3 | 0.8885 | 1.0 | 0.5168 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4.13 | 0.914 |
| 3rd Layer | 3.6.4 | 0.921 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00005397001 | SubName- Full=Chromosome undetermined scaffold_151, whole genome shotgun sequence; (635 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 323 | |||
| COG0513 | 513 | COG0513, SrmB, Superfamily II DNA and RNA helicase | 6e-79 | |
| PRK11776 | 460 | PRK11776, PRK11776, ATP-dependent RNA helicase Dbp | 9e-57 | |
| PRK11192 | 434 | PRK11192, PRK11192, ATP-dependent RNA helicase Srm | 2e-52 | |
| PTZ00110 | 545 | PTZ00110, PTZ00110, helicase; Provisional | 1e-45 | |
| PRK04537 | 572 | PRK04537, PRK04537, ATP-dependent RNA helicase Rhl | 3e-42 | |
| cd00268 | 203 | cd00268, DEADc, DEAD-box helicases | 2e-40 | |
| PRK10590 | 456 | PRK10590, PRK10590, ATP-dependent RNA helicase Rhl | 3e-40 | |
| PRK04837 | 423 | PRK04837, PRK04837, ATP-dependent RNA helicase Rhl | 4e-40 | |
| PRK01297 | 475 | PRK01297, PRK01297, ATP-dependent RNA helicase Rhl | 1e-39 | |
| PTZ00424 | 401 | PTZ00424, PTZ00424, helicase 45; Provisional | 2e-34 | |
| cd00079 | 131 | cd00079, HELICc, Helicase superfamily c-terminal d | 3e-34 | |
| pfam00270 | 169 | pfam00270, DEAD, DEAD/DEAH box helicase | 7e-32 | |
| PRK11634 | 629 | PRK11634, PRK11634, ATP-dependent RNA helicase Dea | 6e-31 | |
| PLN00206 | 518 | PLN00206, PLN00206, DEAD-box ATP-dependent RNA hel | 6e-31 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 2e-28 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 1e-24 | |
| pfam00271 | 78 | pfam00271, Helicase_C, Helicase conserved C-termin | 4e-24 | |
| smart00490 | 82 | smart00490, HELICc, helicase superfamily c-termina | 1e-21 | |
| COG1111 | 542 | COG1111, MPH1, ERCC4-like helicases [DNA replicati | 8e-12 | |
| COG0514 | 590 | COG0514, RecQ, Superfamily II DNA helicase [DNA re | 6e-10 | |
| TIGR01389 | 591 | TIGR01389, recQ, ATP-dependent DNA helicase RecQ | 2e-09 | |
| PRK13766 | 773 | PRK13766, PRK13766, Hef nuclease; Provisional | 1e-08 | |
| cd09639 | 353 | cd09639, Cas3_I, CRISPR/Cas system-associated prot | 4e-07 | |
| COG0553 | 866 | COG0553, HepA, Superfamily II DNA/RNA helicases, S | 2e-06 | |
| TIGR01587 | 358 | TIGR01587, cas3_core, CRISPR-associated helicase C | 3e-06 | |
| COG1203 | 733 | COG1203, COG1203, CRISPR-associated helicase Cas3 | 1e-04 | |
| COG1061 | 442 | COG1061, SSL2, DNA or RNA helicases of superfamily | 3e-04 | |
| COG1205 | 851 | COG1205, COG1205, Distinct helicase family with a | 3e-04 | |
| COG0556 | 663 | COG0556, UvrB, Helicase subunit of the DNA excisio | 0.003 |
| >gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 248 bits (636), Expect = 6e-79
Identities = 106/313 (33%), Positives = 161/313 (51%), Gaps = 19/313 (6%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSIS-HHARFRSTMVSGGGRLRPQEDSLNNPIDMVV 72
+ + A++L PTREL+ Q+ + + + R +V GG +R Q ++L +D+VV
Sbjct: 96 ERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVV 155
Query: 73 GTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRK-FLVPLKNRASKPNGQGF 131
TPGR+L I+ G + ++ LVLDEAD M D GF DI K +R
Sbjct: 156 ATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEKILKALPPDR--------- 206
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASAR--HDFIKLSGSENKLEALLQ 189
QT+L SATM +++L + S + + ++++ E KLE LL+
Sbjct: 207 QTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLK 266
Query: 190 VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
+L+ +V+VF T + L + HG++P +ER L KFK+ G
Sbjct: 267 LLK--DEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKD--G 322
Query: 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA-KKD 307
+ LV TD+AARGLD+ DV HVI +D PL+ DY+HR GRT R G KG S V +++
Sbjct: 323 ELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEE 382
Query: 308 VLLADRIEEAIRK 320
V RIE+ + +
Sbjct: 383 VKKLKRIEKRLER 395
|
Length = 513 |
| >gnl|CDD|236977 PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Score = 190 bits (484), Expect = 9e-57
Identities = 113/320 (35%), Positives = 167/320 (52%), Gaps = 30/320 (9%)
Query: 9 LGVLMK--PRRPR--AVVLCPTRELSEQVFRVAKSISHHARF----RSTMVSGGGRLRPQ 60
LG+L K +R R A+VLCPTREL++QV AK I ARF + + GG + PQ
Sbjct: 60 LGLLQKLDVKRFRVQALVLCPTRELADQV---AKEIRRLARFIPNIKVLTLCGGVPMGPQ 116
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VP 118
DSL + ++VGTPGRIL H+ G + + LVLDEAD M D GF I + P
Sbjct: 117 IDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAP 176
Query: 119 LKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLS 178
R QT+L SAT + + + + ++ + H A + F ++S
Sbjct: 177 -ARR---------QTLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQR-FYEVS 225
Query: 179 GSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERV 238
E +L AL ++L + +VFCNT + V LN S + HG++ ++R
Sbjct: 226 PDE-RLPALQRLL--LHHQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRD 282
Query: 239 ENLNKFKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297
+ L +F N C LV TD+AARGLD+ ++ VI ++ + ++HR GRT R G+KG
Sbjct: 283 QVLVRFAN--RSCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKG 340
Query: 298 KVTSLVAKKDVLLADRIEEA 317
SLVA +++ A+ IE+
Sbjct: 341 LALSLVAPEEMQRANAIEDY 360
|
Length = 460 |
| >gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Score = 177 bits (452), Expect = 2e-52
Identities = 106/312 (33%), Positives = 152/312 (48%), Gaps = 30/312 (9%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
K PR ++L PTREL+ QV A+ ++ H ++GG + + D+VV
Sbjct: 70 KSGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVA 129
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
TPGR+LQ+I++ N ++ L+LDEAD M D GF DI + R QT
Sbjct: 130 TPGRLLQYIKEENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRK--------QT 181
Query: 134 VLVSATMT-KAVQKLVDE------ECQGIAHLRTSTLHKKIASARHDFIKLSGS-ENKLE 185
+L SAT+ AVQ + E + R KKI H + + E+K
Sbjct: 182 LLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRE---RKKI----HQWYYRADDLEHKTA 234
Query: 186 ALLQVL-EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKF 244
L +L +P +++ +VF T + +L + I+ GE+ +R E + +
Sbjct: 235 LLCHLLKQPEVTRS---IVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRL 291
Query: 245 KNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLV 303
DG LV TD+AARG+D+ DV HVI FD P ++ YLHR GRT R G KG SLV
Sbjct: 292 T--DGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLV 349
Query: 304 AKKDVLLADRIE 315
D LL +IE
Sbjct: 350 EAHDHLLLGKIE 361
|
Length = 434 |
| >gnl|CDD|240273 PTZ00110, PTZ00110, helicase; Provisional | Back alignment and domain information |
|---|
Score = 162 bits (411), Expect = 1e-45
Identities = 97/284 (34%), Positives = 147/284 (51%), Gaps = 16/284 (5%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL+EQ+ ++ R+T+ GG R Q +L +++++ PGR
Sbjct: 204 PIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGR 263
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK-NRASKPNGQGFQTVLV 136
++ +E + YLVLDEAD M D GF P IRK + ++ +R QT++
Sbjct: 264 LIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDR---------QTLMW 314
Query: 137 SATMTKAVQKLVDEEC-QGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
SAT K VQ L + C + H+ +L + + K L +L+ +
Sbjct: 315 SATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIM 374
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
G+K+++F T + + L + + HG+ +ER LN+FK G P ++
Sbjct: 375 RDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKT--GKSPIMI 432
Query: 256 CTDLAARGLDL-DVDHVIMFDFPLNSI-DYLHRTGRTARMGAKG 297
TD+A+RGLD+ DV +VI FDFP N I DY+HR GRT R GAKG
Sbjct: 433 ATDVASRGLDVKDVKYVINFDFP-NQIEDYVHRIGRTGRAGAKG 475
|
Length = 545 |
| >gnl|CDD|235307 PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 153 bits (387), Expect = 3e-42
Identities = 108/310 (34%), Positives = 157/310 (50%), Gaps = 15/310 (4%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
KP PRA++L PTREL+ Q+ + A R +V GG Q + L +D+++
Sbjct: 81 KPEDPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIA 140
Query: 74 TPGRILQHIEDGNMVYGDI-KYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQ 132
TPGR++ +++ +V + VLDEAD MFD GF DIR L + R ++ Q
Sbjct: 141 TPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTR------Q 194
Query: 133 TVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASAR-HDFIKLSGSENKLEALLQVL 191
T+L SAT++ V +L E L T + I +AR I E K LL +L
Sbjct: 195 TLLFSATLSHRVLELAYEHMNEPEKLVVET--ETITAARVRQRIYFPADEEKQTLLLGLL 252
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
S S+G + MVF NT V L + G+VP ++R LN+F + G
Sbjct: 253 --SRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRF--QKGQL 308
Query: 252 PTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
LV TD+AARGL +D V +V +D P ++ DY+HR GRTAR+G +G S ++ +
Sbjct: 309 EILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMS 368
Query: 311 ADRIEEAIRK 320
IE I +
Sbjct: 369 LPDIEAYIEQ 378
|
Length = 572 |
| >gnl|CDD|238167 cd00268, DEADc, DEAD-box helicases | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 2e-40
Identities = 55/136 (40%), Positives = 76/136 (55%), Gaps = 12/136 (8%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
K P+A++L PTREL+ Q+ VA+ + H + ++ GG + Q L +VV
Sbjct: 66 KKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVA 125
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPNGQGF 131
TPGR+L +E G + +KYLVLDEAD M D GF IR+ L +P K+R
Sbjct: 126 TPGRLLDLLERGKLDLSKVKYLVLDEADRMLDMGFEDQIREILKLLP-KDR--------- 175
Query: 132 QTVLVSATMTKAVQKL 147
QT+L SATM K V+ L
Sbjct: 176 QTLLFSATMPKEVRDL 191
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. Length = 203 |
| >gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Score = 146 bits (369), Expect = 3e-40
Identities = 111/316 (35%), Positives = 163/316 (51%), Gaps = 27/316 (8%)
Query: 13 MKPRRP-RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMV 71
K RRP RA++L PTREL+ Q+ + S + RS +V GG + PQ L +D++
Sbjct: 70 AKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVL 129
Query: 72 VGTPGRILQHIEDGNMVYGD-IKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQG 130
V TPGR+L +E N V D ++ LVLDEAD M D GF DIR+ L L +
Sbjct: 130 VATPGRLLD-LEHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAKR------- 181
Query: 131 FQTVLVSATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEAL 187
Q +L SAT + ++ L ++ + R +T +++ H K + K E L
Sbjct: 182 -QNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDK----KRKRELL 236
Query: 188 LQVLEPSLSKGN--KVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245
Q+ + KGN +V+VF T + + + LN++ I + HG R L FK
Sbjct: 237 SQM----IGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFK 292
Query: 246 NEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304
GD LV TD+AARGLD++ + HV+ ++ P DY+HR GRT R A G+ SLV
Sbjct: 293 --SGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVC 350
Query: 305 KKDVLLADRIEEAIRK 320
+ L IE+ ++K
Sbjct: 351 VDEHKLLRDIEKLLKK 366
|
Length = 456 |
| >gnl|CDD|235314 PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 145 bits (367), Expect = 4e-40
Identities = 95/309 (30%), Positives = 153/309 (49%), Gaps = 18/309 (5%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
K +PRA+++ PTREL+ Q+ A+ ++ + + GG Q L + +D+++G
Sbjct: 80 KVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIG 139
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
T GR++ + + ++ G I+ +VLDEAD MFD GF DIR +L R N +
Sbjct: 140 TTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIR-WLF---RRMPPANQR--LN 193
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLE- 192
+L SAT++ V++L E ++ K + + S +E K+ L ++E
Sbjct: 194 MLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPS-NEEKMRLLQTLIEE 252
Query: 193 --PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250
P ++ ++F NT + + L + G+V ++R+ L +F GD
Sbjct: 253 EWP-----DRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFT--RGD 305
Query: 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309
LV TD+AARGL + V HV +D P + DY+HR GRT R GA G SL ++ L
Sbjct: 306 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYAL 365
Query: 310 LADRIEEAI 318
IE I
Sbjct: 366 NLPAIETYI 374
|
Length = 423 |
| >gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Score = 145 bits (366), Expect = 1e-39
Identities = 93/305 (30%), Positives = 150/305 (49%), Gaps = 13/305 (4%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLN-NPIDMVVGTPG 76
PRA+++ PTREL Q+ + A +++ + GG Q L D++V TPG
Sbjct: 163 PRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPG 222
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
R+L + G + ++ +VLDEAD M D GF P +R+ + R + + QT+L
Sbjct: 223 RLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQII-----RQTPRKEER-QTLLF 276
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS 196
SAT T V L + A + + + ++GS+ K + L ++ + +
Sbjct: 277 SATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSD-KYKLLYNLV--TQN 333
Query: 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256
+VMVF N + R ++ L ++ I+ G+VP +R++ L F+ +G LV
Sbjct: 334 PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFR--EGKIRVLVA 391
Query: 257 TDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIE 315
TD+A RG+ +D + HVI F P + DY+HR GRT R GA G S + D IE
Sbjct: 392 TDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIE 451
Query: 316 EAIRK 320
E + +
Sbjct: 452 ELLGR 456
|
Length = 475 |
| >gnl|CDD|185609 PTZ00424, PTZ00424, helicase 45; Provisional | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 2e-34
Identities = 87/301 (28%), Positives = 146/301 (48%), Gaps = 19/301 (6%)
Query: 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78
+A++L PTREL++Q+ +V ++ + + R GG +R + L + MVVGTPGR+
Sbjct: 98 QALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRV 157
Query: 79 LQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSA 138
I+ ++ D+K +LDEAD M RGF I L Q L SA
Sbjct: 158 YDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLP--------PDVQVALFSA 209
Query: 139 TMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKG 198
TM + +L + + + + R ++ + E K + L + E +L+
Sbjct: 210 TMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDLYE-TLTI- 267
Query: 199 NKVMVFCNTLNSSRAVDHF---LNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
+ +++CNT R VD+ ++E + HG++ ++R + +F++ G L+
Sbjct: 268 TQAIIYCNT---RRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRS--GSTRVLI 322
Query: 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314
TDL ARG+D+ V VI +D P + +Y+HR GR+ R G KG + V D+ I
Sbjct: 323 TTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEI 382
Query: 315 E 315
E
Sbjct: 383 E 383
|
Length = 401 |
| >gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 3e-34
Identities = 48/124 (38%), Positives = 66/124 (53%), Gaps = 3/124 (2%)
Query: 180 SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVE 239
+ KLEALL++L+ L KG KV++FC + + L + I HG+ +ER E
Sbjct: 10 EDEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREE 69
Query: 240 NLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGK 298
L F+ G+ LV TD+ ARG+DL +V VI +D P + YL R GR R G KG
Sbjct: 70 VLKDFRE--GEIVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGT 127
Query: 299 VTSL 302
L
Sbjct: 128 AILL 131
|
Length = 131 |
| >gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 7e-32
Identities = 49/144 (34%), Positives = 78/144 (54%), Gaps = 11/144 (7%)
Query: 7 AMLGVLMKPRR-PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL- 64
+L L+ + P+A+VL PTREL+EQ++ K + R +++GG L+ Q L
Sbjct: 34 PILQALLPKKGGPQALVLAPTRELAEQIYEELKKLFKILGLRVALLTGGTSLKEQARKLK 93
Query: 65 NNPIDMVVGTPGRILQHIEDGNMVY-GDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRA 123
D++VGTPGR+L + G + ++K LVLDEA + D GFG D+ + L L
Sbjct: 94 KGKADILVGTPGRLLDLLRRGKLKLLKNLKLLVLDEAHRLLDMGFGDDLEEILSRLPPD- 152
Query: 124 SKPNGQGFQTVLVSATMTKAVQKL 147
Q +L+SAT+ + ++ L
Sbjct: 153 -------RQILLLSATLPRNLEDL 169
|
Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. Length = 169 |
| >gnl|CDD|236941 PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 6e-31
Identities = 99/309 (32%), Positives = 154/309 (49%), Gaps = 21/309 (6%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHAR-FRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
+ P+ +VL PTREL+ QV S H R + GG R Q +L +VVGT
Sbjct: 73 KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGT 132
Query: 75 PGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTV 134
PGR+L H++ G + + LVLDEAD M GF D+ + A P G QT
Sbjct: 133 PGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIM------AQIPEGH--QTA 184
Query: 135 LVSATMTKAVQKLVD---EECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL 191
L SATM +A++++ +E Q + + T I+ + + + G K EAL++ L
Sbjct: 185 LFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQS---YWTVWGMR-KNEALVRFL 240
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
E + ++F T N++ V L N ++ +G++ R + L + K DG
Sbjct: 241 EA--EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLK--DGRL 296
Query: 252 PTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
L+ TD+AARGLD++ + V+ +D P++S Y+HR GRT R G G+ V ++ L
Sbjct: 297 DILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRL 356
Query: 311 ADRIEEAIR 319
IE ++
Sbjct: 357 LRNIERTMK 365
|
Length = 629 |
| >gnl|CDD|215103 PLN00206, PLN00206, DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 6e-31
Identities = 87/289 (30%), Positives = 138/289 (47%), Gaps = 24/289 (8%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R P A+VL PTREL QV AK + F++ +V GG + Q + ++++VGTP
Sbjct: 195 RNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTP 254
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
GR++ + ++ ++ LVLDE D M +RGF + + L S+P Q +L
Sbjct: 255 GRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQAL----SQP-----QVLL 305
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
SAT++ V+K + I + ++ A ++ K + L +L+
Sbjct: 306 FSATVSPEVEKFASSLAKDIILISIGNPNRP-NKAVKQLAIWVETKQKKQKLFDILKSKQ 364
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNE-----NQISTVNYHGEVPAQERVENLNKFKNEDGD 250
+VF + SR L + ++ HGE +ER E + F G+
Sbjct: 365 HFKPPAVVFVS----SRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLV--GE 418
Query: 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSID-YLHRTGRTARMGAKG 297
P +V T + RG+DL V VI+FD P N+I Y+H+ GR +RMG KG
Sbjct: 419 VPVIVATGVLGRGVDLLRVRQVIIFDMP-NTIKEYIHQIGRASRMGEKG 466
|
Length = 518 |
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 2e-28
Identities = 43/158 (27%), Positives = 71/158 (44%), Gaps = 9/158 (5%)
Query: 7 AMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL-N 65
L L + + R +VL PTREL+EQ K + + + GG R Q L +
Sbjct: 44 PALEALKRGKGGRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLES 103
Query: 66 NPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASK 125
D++V TPGR+L +E+ + ++ ++LDEA + D GFG + K L L
Sbjct: 104 GKTDILVTTPGRLLDLLENDKLSLSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNV-- 161
Query: 126 PNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTL 163
Q +L+SAT + ++ L++ +
Sbjct: 162 ------QLLLLSATPPEEIENLLELFLNDPVFIDVGFT 193
|
Length = 201 |
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 96.6 bits (241), Expect = 1e-24
Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 9/134 (6%)
Query: 7 AMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNN 66
+L +L + + +VL PTREL+ QV K + + + GG ++ QE L+
Sbjct: 20 PILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLLSG 78
Query: 67 PIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKP 126
D+VVGTPGR+L +E + + L+LDEA + ++GFG K L+ L
Sbjct: 79 KTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPK----- 133
Query: 127 NGQGFQTVLVSATM 140
Q +L+SAT
Sbjct: 134 ---DRQVLLLSATP 144
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Length = 144 |
| >gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 4e-24
Identities = 33/79 (41%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 217 FLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFD 275
L + I HG + +ER E L F+N G LV TD+A RG+DL DV+ VI +D
Sbjct: 2 LLRKPGIKVARLHGGLSQEEREEILEDFRN--GKSKVLVATDVAGRGIDLPDVNLVINYD 59
Query: 276 FPLNSIDYLHRTGRTARMG 294
P N Y+ R GR R G
Sbjct: 60 LPWNPASYIQRIGRAGRAG 78
|
The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. Length = 78 |
| >gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 1e-21
Identities = 35/80 (43%), Positives = 43/80 (53%), Gaps = 3/80 (3%)
Query: 216 HFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMF 274
L E I HG + +ER E L+KF N G LV TD+A RGLDL VD VI++
Sbjct: 5 ELLKELGIKVARLHGGLSQEEREEILDKFNN--GKIKVLVATDVAERGLDLPGVDLVIIY 62
Query: 275 DFPLNSIDYLHRTGRTARMG 294
D P + Y+ R GR R G
Sbjct: 63 DLPWSPASYIQRIGRAGRAG 82
|
Length = 82 |
| >gnl|CDD|224036 COG1111, MPH1, ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 8e-12
Identities = 55/220 (25%), Positives = 89/220 (40%), Gaps = 37/220 (16%)
Query: 122 RASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLR----------TSTLHKKIASAR 171
A + F+ + V A K L E QGI T K S
Sbjct: 266 MAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLL 325
Query: 172 HDFI-----------KLSGSEN-KLEALLQVLEPSLSK--GNKVMVFCNTLNSSRAVDHF 217
D SG E+ KLE L ++L+ L K ++V+VF +++ + +F
Sbjct: 326 ADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNF 385
Query: 218 LNENQIS---------TVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-D 267
L + I + + +E+ E +++F+ G+ LV T + GLD+ +
Sbjct: 386 LKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRK--GEYNVLVATSVGEEGLDIPE 443
Query: 268 VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
VD VI ++ + I + R GRT R KG+V LV +
Sbjct: 444 VDLVIFYEPVPSEIRSIQRKGRTGR-KRKGRVVVLVTEGT 482
|
Length = 542 |
| >gnl|CDD|223588 COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 6e-10
Identities = 57/233 (24%), Positives = 92/233 (39%), Gaps = 21/233 (9%)
Query: 90 GDIKYLVLDEADTMFDRG--FGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKL 147
I + +DEA + G F PD R+ L L+ P + ++AT T V+
Sbjct: 130 LPISLVAIDEAHCISQWGHDFRPDYRR-LGRLRAGLPNP-----PVLALTATATPRVRDD 183
Query: 148 VDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQV--LEPSLSKGNK-VMVF 204
+ E L + S + L K E Q+ L L + +K +++
Sbjct: 184 IRE------QLGLQDANIFRGSFDRPNLALK-VVEKGEPSDQLAFLATVLPQLSKSGIIY 236
Query: 205 CNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGL 264
C T + +L +N IS YH + +ER F N++ +V T+ G+
Sbjct: 237 CLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEI--KVMVATNAFGMGI 294
Query: 265 DL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEE 316
D DV VI +D P + Y TGR R G + L + +D+ + E
Sbjct: 295 DKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIE 347
|
Length = 590 |
| >gnl|CDD|130456 TIGR01389, recQ, ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 2e-09
Identities = 56/251 (22%), Positives = 91/251 (36%), Gaps = 33/251 (13%)
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRG--FGPDIRKFLVPLKNRASKPNGQGFQTV 134
L ++ I + +DEA + G F P+ ++ L L R F V
Sbjct: 118 YFLNMLQRIP-----IALVAVDEAHCVSQWGHDFRPEYQR-LGSLAER--------FPQV 163
Query: 135 LV---SATMTKAVQKLVDEE--CQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQ 189
+AT ++ + E TS + + NK + LL
Sbjct: 164 PRIALTATADAETRQDIRELLRLADANEFITSFDRPNL------RFSVVKKNNKQKFLLD 217
Query: 190 VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249
L +G +++ ++ + L IS + YH + + R EN F +D
Sbjct: 218 YL--KKHRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDV 275
Query: 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD- 307
+V T+ G+D +V VI +D P N Y GR R G + L + D
Sbjct: 276 K--VMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADI 333
Query: 308 VLLADRIEEAI 318
LL RIE++
Sbjct: 334 ALLKRRIEQSE 344
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ [DNA metabolism, DNA replication, recombination, and repair]. Length = 591 |
| >gnl|CDD|237496 PRK13766, PRK13766, Hef nuclease; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 1e-08
Identities = 40/136 (29%), Positives = 72/136 (52%), Gaps = 16/136 (11%)
Query: 183 KLEALLQVLEPSL--SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPA------ 234
KLE L ++++ L + ++++VF +++ + L + I V + G+
Sbjct: 348 KLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGM 407
Query: 235 --QERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNS-IDYLHRTGRT 290
+E++E L+KF+ + + LV T +A GLD+ VD VI ++ P+ S I + R GRT
Sbjct: 408 SQKEQIEILDKFRAGEFNV--LVSTSVAEEGLDIPSVDLVIFYE-PVPSEIRSIQRKGRT 464
Query: 291 ARMGAKGKVTSLVAKK 306
R +G+V L+AK
Sbjct: 465 GR-QEEGRVVVLIAKG 479
|
Length = 773 |
| >gnl|CDD|187770 cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3 | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 4e-07
Identities = 48/210 (22%), Positives = 82/210 (39%), Gaps = 26/210 (12%)
Query: 95 LVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQG 154
L+ DE + L L K N +L+SAT+ K + E +
Sbjct: 127 LIFDEVHFYDEYTLA----LILAVL--EVLKDNDVPI--LLMSATLPK----FLKEYAEK 174
Query: 155 IAHLRTSTLHKKIASARHDFIKLS----GSENKLEALLQVLEPSLSKGNKVMVFCNTLNS 210
I ++ + + R FIK+ G + LE LL+ + KG V + NT++
Sbjct: 175 IGYVEENEPLDLKPNERAPFIKIESDKVGEISSLERLLE----FIKKGGSVAIIVNTVDR 230
Query: 211 SRAVDHFLNE--NQISTVNYHGEVPAQERVENLNKFKNEDGDCPT--LVCTDLAARGLDL 266
++ L E + + H ++R + + E +V T + LD+
Sbjct: 231 AQEFYQQLKEKGPEEEIMLIHSRFTEKDRAKKEAELLLEFKKSEKFVIVATQVIEASLDI 290
Query: 267 DVDHVIMFDFPLNSIDYLHRTGRTARMGAK 296
VD +I P++S+ + R GR R G K
Sbjct: 291 SVDVMITELAPIDSL--IQRLGRLHRYGEK 318
|
CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; DEAD/DEAH box helicase DNA helicase cas3'; Often but not always is fused to HD nuclease domain; signature gene for Type I. Length = 353 |
| >gnl|CDD|223627 COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 49.0 bits (116), Expect = 2e-06
Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 12/146 (8%)
Query: 179 GSENKLEALLQVLEPSLSK---GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQ 235
S+ KL+AL ++L L + +KV++F ++ +L I V G PA+
Sbjct: 689 LSKGKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAK 748
Query: 236 ERVENLNKFKNEDGDCPTLVCTDLAARGLDLDV-DHVIMFDFPLNSIDYLHRTGRTARMG 294
R E +++F ++ + L+ GL+L D VI+FD N L R R+G
Sbjct: 749 RRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIG 808
Query: 295 AKG--KVTSLVAKKDVLLADRIEEAI 318
K KV L+ + IEE I
Sbjct: 809 QKRPVKVYRLITR------GTIEEKI 828
|
Length = 866 |
| >gnl|CDD|233483 TIGR01587, cas3_core, CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 3e-06
Identities = 50/213 (23%), Positives = 85/213 (39%), Gaps = 29/213 (13%)
Query: 95 LVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQG 154
L+ DE + L L K N +L+SAT+ K + E +
Sbjct: 128 LIFDEVHFYDEYTLA----LILAVL--EVLKDNDVPI--LLMSATLPK----FLKEYAEK 175
Query: 155 IAH---LRTSTLHKKIASARHDFIKLS----GSENKLEALLQVLEPSLSKGNKVMVFCNT 207
I + L ++ RH FIK+ G + LE LL+ + KG K+ + NT
Sbjct: 176 IGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERLLE----FIKKGGKIAIIVNT 231
Query: 208 LNSSRAVDHFLNEN--QISTVNYHGEVPAQERVENLNKFKNE--DGDCPTLVCTDLAARG 263
++ ++ L EN + + H ++R + + E + +V T +
Sbjct: 232 VDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEAS 291
Query: 264 LDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAK 296
LD+ D +I P++S+ + R GR R G K
Sbjct: 292 LDISADVMITELAPIDSL--IQRLGRLHRYGRK 322
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model [Mobile and extrachromosomal element functions, Other]. Length = 358 |
| >gnl|CDD|224124 COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 1e-04
Identities = 40/212 (18%), Positives = 82/212 (38%), Gaps = 19/212 (8%)
Query: 94 YLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQ 153
++LDE ++ L+ A G +L+SAT+ +++ + +
Sbjct: 341 LVILDEVH-LYADETMLAALLALLEALAEA------GVPVLLMSATLPPFLKEKLKKALG 393
Query: 154 ---GIAHLRTSTLH-KKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLN 209
+ + R + + + + L E + +G KV+V NT++
Sbjct: 394 KGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELISEE--VKEGKKVLVIVNTVD 451
Query: 210 SSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN--EDGDCPTLVCTDLAARGLDLD 267
+ + L E + H ++R E + K + + +V T + G+D+D
Sbjct: 452 RAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID 511
Query: 268 VDHVIMFDF-PLNSIDYLHRTGRTARMGAKGK 298
D +I + P++S+ + R GR R G K
Sbjct: 512 FDVLIT-ELAPIDSL--IQRAGRVNRHGKKEN 540
|
Length = 733 |
| >gnl|CDD|223989 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 3e-04
Identities = 36/152 (23%), Positives = 61/152 (40%), Gaps = 14/152 (9%)
Query: 176 KLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQ 235
SE K+ A+ +L ++G+K ++F + + + + I GE P +
Sbjct: 262 IAIASERKIAAVRGLL-LKHARGDKTLIFASDVEHAYEIAKLFLAPGIVEA-ITGETPKE 319
Query: 236 ERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMG 294
ER L +F+ G LV + G+D+ D D +I+ + ++ R GR R
Sbjct: 320 EREAILERFR--TGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR-P 376
Query: 295 AKGK------VTSLVAKKDVLLADRIEEAIRK 320
A+GK SLV + I R
Sbjct: 377 AEGKEDTLALDYSLVPDDLGE--EDIARRRRL 406
|
Length = 442 |
| >gnl|CDD|224126 COG1205, COG1205, Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 3e-04
Identities = 61/304 (20%), Positives = 116/304 (38%), Gaps = 28/304 (9%)
Query: 12 LMKPRRPRAVVLCPTRELSE-QVFRVAKSISHH-ARFRSTMVSGGGRLRPQEDSLNNPID 69
L++ RA++L PT L+ Q R+ + IS + +G + + NP D
Sbjct: 110 LLRDPSARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPD 169
Query: 70 MVVGTPG----RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASK 125
+++ P +L++ + + ++KYLV+DE T + G ++ L L R +
Sbjct: 170 ILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHT-YRGVQGSEVALLLRRLLRRLRR 228
Query: 126 PNGQGFQTVLVSATMT---KAVQKLVDEECQGIAHLRTSTLHKKIASAR---HDFIKLSG 179
Q + SAT+ + ++L + + S + R + S
Sbjct: 229 YGS-PLQIICTSATLANPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESI 287
Query: 180 SENKLEALLQVLEPSLSKGNKVMVFCN--------TLNSSRAVDHFLNENQISTVNYHGE 231
+ L L + + G + +VF L+ R + + + Y
Sbjct: 288 RRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAG 347
Query: 232 VPAQERVENLNKFKNEDGDCPTLVCTDLAAR-GLDL-DVDHVIMFDFPLNSI-DYLHRTG 288
+ +ER +FK + V A G+D+ +D VI + +P S+ + R G
Sbjct: 348 LHREERRRIEAEFKEGELL---GVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAG 404
Query: 289 RTAR 292
R R
Sbjct: 405 RAGR 408
|
Length = 851 |
| >gnl|CDD|223630 COG0556, UvrB, Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.003
Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 19/111 (17%)
Query: 217 FLNENQISTVNY-HGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMF 274
+L E I V Y H ++ ERVE + + + D LV +L GLDL +V V +
Sbjct: 465 YLKELGIK-VRYLHSDIDTLERVEIIRDLRLGEFDV--LVGINLLREGLDLPEVSLVAIL 521
Query: 275 D-----FPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRK 320
D F + + GR AR GKV +L AD+I ++++K
Sbjct: 522 DADKEGFLRSERSLIQTIGRAAR-NVNGKV--------ILYADKITDSMQK 563
|
Length = 663 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 323 | |||
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0330 | 476 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0328 | 400 | consensus Predicted ATP-dependent RNA helicase FAL | 100.0 | |
| PTZ00110 | 545 | helicase; Provisional | 100.0 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 100.0 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 100.0 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 100.0 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 100.0 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 100.0 | |
| KOG0326 | 459 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| KOG0333 | 673 | consensus U5 snRNP-like RNA helicase subunit [RNA | 100.0 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 100.0 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PTZ00424 | 401 | helicase 45; Provisional | 100.0 | |
| KOG0339 | 731 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0335 | 482 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0336 | 629 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0338 | 691 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0342 | 543 | consensus ATP-dependent RNA helicase pitchoune [RN | 100.0 | |
| KOG0332 | 477 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0340 | 442 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0345 | 567 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG0343 | 758 | consensus RNA Helicase [RNA processing and modific | 100.0 | |
| KOG0341 | 610 | consensus DEAD-box protein abstrakt [RNA processin | 100.0 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 100.0 | |
| KOG0346 | 569 | consensus RNA helicase [RNA processing and modific | 100.0 | |
| KOG0347 | 731 | consensus RNA helicase [RNA processing and modific | 100.0 | |
| KOG0348 | 708 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| KOG4284 | 980 | consensus DEAD box protein [Transcription] | 100.0 | |
| KOG0334 | 997 | consensus RNA helicase [RNA processing and modific | 100.0 | |
| KOG0327 | 397 | consensus Translation initiation factor 4F, helica | 100.0 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 100.0 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 100.0 | |
| KOG0350 | 620 | consensus DEAD-box ATP-dependent RNA helicase [RNA | 100.0 | |
| KOG0337 | 529 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 100.0 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 100.0 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 100.0 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 100.0 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 100.0 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 100.0 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 100.0 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 100.0 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 100.0 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 100.0 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 100.0 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 100.0 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 100.0 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 100.0 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 100.0 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 100.0 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 100.0 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 100.0 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 100.0 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 100.0 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 100.0 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 100.0 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 100.0 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 99.97 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 99.97 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 99.97 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 99.97 | |
| KOG0329 | 387 | consensus ATP-dependent RNA helicase [RNA processi | 99.97 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 99.97 | |
| KOG0351 | 941 | consensus ATP-dependent DNA helicase [Replication, | 99.97 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 99.97 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 99.97 | |
| KOG0349 | 725 | consensus Putative DEAD-box RNA helicase DDX1 [RNA | 99.97 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 99.97 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 99.96 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 99.96 | |
| KOG0354 | 746 | consensus DEAD-box like helicase [General function | 99.96 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 99.96 | |
| KOG0352 | 641 | consensus ATP-dependent DNA helicase [Replication, | 99.96 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 99.96 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 99.96 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 99.96 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 99.95 | |
| KOG0947 | 1248 | consensus Cytoplasmic exosomal RNA helicase SKI2, | 99.95 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 99.95 | |
| KOG0948 | 1041 | consensus Nuclear exosomal RNA helicase MTR4, DEAD | 99.94 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 99.94 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 99.94 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 99.93 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 99.93 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 99.93 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 99.93 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 99.93 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 99.92 | |
| KOG0353 | 695 | consensus ATP-dependent DNA helicase [General func | 99.92 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 99.92 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 99.91 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 99.91 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 99.9 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 99.9 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 99.89 | |
| KOG0385 | 971 | consensus Chromatin remodeling complex WSTF-ISWI, | 99.89 | |
| KOG0950 | 1008 | consensus DNA polymerase theta/eta, DEAD-box super | 99.89 | |
| KOG0387 | 923 | consensus Transcription-coupled repair protein CSB | 99.87 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 99.87 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 99.84 | |
| KOG0949 | 1330 | consensus Predicted helicase, DEAD-box superfamily | 99.84 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 99.83 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 99.83 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 99.82 | |
| KOG0922 | 674 | consensus DEAH-box RNA helicase [RNA processing an | 99.81 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 99.8 | |
| KOG0390 | 776 | consensus DNA repair protein, SNF2 family [Replica | 99.78 | |
| KOG0384 | 1373 | consensus Chromodomain-helicase DNA-binding protei | 99.78 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 99.78 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 99.78 | |
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 99.77 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 99.76 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 99.76 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 99.75 | |
| KOG0389 | 941 | consensus SNF2 family DNA-dependent ATPase [Chroma | 99.74 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 99.73 | |
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 99.73 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 99.73 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 99.73 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 99.72 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 99.72 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 99.71 | |
| PF06862 | 442 | DUF1253: Protein of unknown function (DUF1253); In | 99.71 | |
| KOG4150 | 1034 | consensus Predicted ATP-dependent RNA helicase [RN | 99.71 | |
| KOG0923 | 902 | consensus mRNA splicing factor ATP-dependent RNA h | 99.71 | |
| KOG0920 | 924 | consensus ATP-dependent RNA helicase A [RNA proces | 99.69 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 99.68 | |
| KOG0953 | 700 | consensus Mitochondrial RNA helicase SUV3, DEAD-bo | 99.65 | |
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 99.65 | |
| KOG1123 | 776 | consensus RNA polymerase II transcription initiati | 99.64 | |
| KOG0926 | 1172 | consensus DEAH-box RNA helicase [RNA processing an | 99.64 | |
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 99.64 | |
| KOG0924 | 1042 | consensus mRNA splicing factor ATP-dependent RNA h | 99.64 | |
| KOG1000 | 689 | consensus Chromatin remodeling protein HARP/SMARCA | 99.63 | |
| KOG1002 | 791 | consensus Nucleotide excision repair protein RAD16 | 99.6 | |
| KOG4439 | 901 | consensus RNA polymerase II transcription terminat | 99.59 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 99.57 | |
| KOG0925 | 699 | consensus mRNA splicing factor ATP-dependent RNA h | 99.5 | |
| KOG0386 | 1157 | consensus Chromatin remodeling complex SWI/SNF, co | 99.45 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 99.44 | |
| KOG0388 | 1185 | consensus SNF2 family DNA-dependent ATPase [Replic | 99.43 | |
| KOG1015 | 1567 | consensus Transcription regulator XNP/ATRX, DEAD-b | 99.41 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 99.4 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 99.39 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 99.38 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 99.37 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 99.29 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.22 | |
| KOG2340 | 698 | consensus Uncharacterized conserved protein [Funct | 99.21 | |
| TIGR02562 | 1110 | cas3_yersinia CRISPR-associated helicase Cas3. The | 99.16 | |
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 99.16 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 99.12 | |
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 99.09 | |
| COG0653 | 822 | SecA Preprotein translocase subunit SecA (ATPase, | 99.07 | |
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 99.06 | |
| COG0610 | 962 | Type I site-specific restriction-modification syst | 99.02 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 98.85 | |
| KOG1016 | 1387 | consensus Predicted DNA helicase, DEAD-box superfa | 98.83 | |
| KOG1001 | 674 | consensus Helicase-like transcription factor HLTF/ | 98.82 | |
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 98.77 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 98.72 | |
| PF13307 | 167 | Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 | 98.46 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 98.41 | |
| TIGR00596 | 814 | rad1 DNA repair protein (rad1). This family is bas | 98.38 | |
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 98.37 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 98.34 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 98.3 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 98.19 | |
| KOG0391 | 1958 | consensus SNF2 family DNA-dependent ATPase [Genera | 97.83 | |
| KOG0921 | 1282 | consensus Dosage compensation complex, subunit MLE | 97.78 | |
| PF14617 | 252 | CMS1: U3-containing 90S pre-ribosomal complex subu | 97.77 | |
| smart00492 | 141 | HELICc3 helicase superfamily c-terminal domain. | 97.55 | |
| PF07517 | 266 | SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 | 97.49 | |
| smart00491 | 142 | HELICc2 helicase superfamily c-terminal domain. | 97.37 | |
| PF13871 | 278 | Helicase_C_4: Helicase_C-like | 97.37 | |
| PF13872 | 303 | AAA_34: P-loop containing NTP hydrolase pore-1 | 97.15 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 97.02 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 96.96 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 96.94 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 96.91 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 96.83 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 96.4 | |
| KOG0298 | 1394 | consensus DEAD box-containing helicase-like transc | 96.37 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 96.05 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 95.42 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 95.38 | |
| KOG0298 | 1394 | consensus DEAD box-containing helicase-like transc | 95.29 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 95.08 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 94.83 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 94.62 | |
| KOG0383 | 696 | consensus Predicted helicase [General function pre | 94.57 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 94.54 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 94.45 | |
| KOG0701 | 1606 | consensus dsRNA-specific nuclease Dicer and relate | 94.34 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 93.83 | |
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 93.71 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 93.53 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 93.28 | |
| PRK15483 | 986 | type III restriction-modification system StyLTI en | 93.21 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 93.13 | |
| PF06733 | 174 | DEAD_2: DEAD_2; InterPro: IPR010614 This represent | 93.07 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 93.05 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 92.93 | |
| KOG1133 | 821 | consensus Helicase of the DEAD superfamily [Replic | 92.7 | |
| PF10593 | 239 | Z1: Z1 domain; InterPro: IPR018310 This entry repr | 92.37 | |
| KOG0338 | 691 | consensus ATP-dependent RNA helicase [RNA processi | 91.86 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 91.43 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 91.3 | |
| smart00488 | 289 | DEXDc2 DEAD-like helicases superfamily. | 90.87 | |
| smart00489 | 289 | DEXDc3 DEAD-like helicases superfamily. | 90.87 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 90.82 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 90.44 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 90.3 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 90.26 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 89.9 | |
| PHA03368 | 738 | DNA packaging terminase subunit 1; Provisional | 89.86 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 89.52 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 89.33 | |
| KOG0333 | 673 | consensus U5 snRNP-like RNA helicase subunit [RNA | 89.3 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 89.22 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 88.81 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 88.65 | |
| KOG0347 | 731 | consensus RNA helicase [RNA processing and modific | 88.58 | |
| PTZ00110 | 545 | helicase; Provisional | 88.55 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 88.11 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 88.05 | |
| COG0593 | 408 | DnaA ATPase involved in DNA replication initiation | 87.67 | |
| PRK12422 | 445 | chromosomal replication initiation protein; Provis | 87.58 | |
| KOG0339 | 731 | consensus ATP-dependent RNA helicase [RNA processi | 86.88 | |
| cd01524 | 90 | RHOD_Pyr_redox Member of the Rhodanese Homology Do | 86.53 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 86.14 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 86.11 | |
| PF12340 | 229 | DUF3638: Protein of unknown function (DUF3638); In | 86.06 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 86.01 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 85.77 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 85.5 | |
| cd01523 | 100 | RHOD_Lact_B Member of the Rhodanese Homology Domai | 85.19 | |
| KOG1513 | 1300 | consensus Nuclear helicase MOP-3/SNO (DEAD-box sup | 84.84 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 84.54 | |
| PF05127 | 177 | Helicase_RecD: Helicase; InterPro: IPR007807 This | 84.17 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 84.16 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 83.86 | |
| PF03354 | 477 | Terminase_1: Phage Terminase ; InterPro: IPR005021 | 83.75 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 83.67 | |
| PTZ00424 | 401 | helicase 45; Provisional | 83.58 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 83.15 | |
| KOG0350 | 620 | consensus DEAD-box ATP-dependent RNA helicase [RNA | 82.32 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 82.31 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 82.2 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 82.15 | |
| KOG1132 | 945 | consensus Helicase of the DEAD superfamily [Replic | 81.71 | |
| PF04364 | 137 | DNA_pol3_chi: DNA polymerase III chi subunit, HolC | 81.53 | |
| COG3421 | 812 | Uncharacterized protein conserved in bacteria [Fun | 81.13 | |
| PF02302 | 90 | PTS_IIB: PTS system, Lactose/Cellobiose specific I | 81.02 | |
| COG3587 | 985 | Restriction endonuclease [Defense mechanisms] | 80.86 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 80.78 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 80.57 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 80.36 | |
| cd05563 | 86 | PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB o | 80.14 |
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-53 Score=362.62 Aligned_cols=301 Identities=36% Similarity=0.573 Sum_probs=269.9
Q ss_pred ccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCC
Q 047490 12 LMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGD 91 (323)
Q Consensus 12 ~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~ 91 (323)
..+.++|++|||+|||+||.|+.+.+..+....+++..+++||.....+...+..+.+|+|+||+++.+++..+...+++
T Consensus 160 ~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~ 239 (519)
T KOG0331|consen 160 LSRGDGPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSR 239 (519)
T ss_pred ccCCCCCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccc
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccc-ccccccc
Q 047490 92 IKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTL-HKKIASA 170 (323)
Q Consensus 92 ~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 170 (323)
+.++|+||||+|++.+|.+.++.|+..++... .|.+++|||++..+..+...++..+..+..... .......
T Consensus 240 v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~-------rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~ 312 (519)
T KOG0331|consen 240 VTYLVLDEADRMLDMGFEPQIRKILSQIPRPD-------RQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHN 312 (519)
T ss_pred eeEEEeccHHhhhccccHHHHHHHHHhcCCCc-------ccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcc
Confidence 99999999999999999999999999995432 289999999999999999999998877666544 2222233
Q ss_pred eeeEEeccCChhHHHHHHHHhccCC-CCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCC
Q 047490 171 RHDFIKLSGSENKLEALLQVLEPSL-SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249 (323)
Q Consensus 171 ~~~~~~~~~~~~k~~~l~~~l~~~~-~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g 249 (323)
..+.....+...|...|.++|.... +.++|+||||++.+.|+++...++..+.++..+||+.++.+|+.+++.|++ |
T Consensus 313 i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~Fre--G 390 (519)
T KOG0331|consen 313 IRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFRE--G 390 (519)
T ss_pred hhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhccc--C
Confidence 3334444446677777777776654 466899999999999999999999888999999999999999999999999 9
Q ss_pred CCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHhc
Q 047490 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRKN 321 (323)
Q Consensus 250 ~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~~ 321 (323)
+..|||||+++++|+|+ ++++||+||+|.+..+|.||+||.||.|+.|.+++|++..+....+.+.+.++..
T Consensus 391 ~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~ 463 (519)
T KOG0331|consen 391 KSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREA 463 (519)
T ss_pred CcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHc
Confidence 99999999999999999 9999999999999999999999999999999999999999999999999999653
|
|
| >KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-51 Score=334.03 Aligned_cols=300 Identities=36% Similarity=0.587 Sum_probs=278.9
Q ss_pred ccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHc-CCCC
Q 047490 10 GVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIED-GNMV 88 (323)
Q Consensus 10 ~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~-~~~~ 88 (323)
+++.+++.++++||+|||+|+.|+.+.+..++...|+++..+.||.+...+...+...++|+|+||+++++.+.+ +.+.
T Consensus 122 ~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~ 201 (476)
T KOG0330|consen 122 RLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFS 201 (476)
T ss_pred HHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCcc
Confidence 344567779999999999999999999999999999999999999999888888888899999999999999985 6788
Q ss_pred CCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccc
Q 047490 89 YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIA 168 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (323)
+..++++|+||||++++..|.+.+..|+..++... |.+++|||++..+.+.....+..+..+.........+
T Consensus 202 le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~er--------qt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~ 273 (476)
T KOG0330|consen 202 LEQLKFLVLDEADRLLDMDFEEELDYILKVIPRER--------QTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVD 273 (476)
T ss_pred HHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCccc--------eEEEEEeecchhhHHHHhhccCCCeEEeccchhcchH
Confidence 99999999999999999999999999999998644 9999999999999998888888888888888888888
Q ss_pred cceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccC
Q 047490 169 SARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNED 248 (323)
Q Consensus 169 ~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 248 (323)
...++|..++. ..|...|..++++. .+..+||||++...+..++-.|+..|+.+..+||.|+...|...++.|++
T Consensus 274 ~lkQ~ylfv~~-k~K~~yLV~ll~e~--~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~-- 348 (476)
T KOG0330|consen 274 HLKQTYLFVPG-KDKDTYLVYLLNEL--AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKA-- 348 (476)
T ss_pred HhhhheEeccc-cccchhHHHHHHhh--cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhc--
Confidence 88888888774 55888899999876 66899999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHhcC
Q 047490 249 GDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRKNE 322 (323)
Q Consensus 249 g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~~~ 322 (323)
|.+.||+||+++++|+|+ .+++|||||.|.+..+|++|+||.+|.|..|.+|.+++.-|.+...+|+..+++..
T Consensus 349 ~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl 423 (476)
T KOG0330|consen 349 GARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKL 423 (476)
T ss_pred cCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCC
Confidence 999999999999999999 99999999999999999999999999999999999999999999999999999864
|
|
| >KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-49 Score=310.41 Aligned_cols=294 Identities=29% Similarity=0.469 Sum_probs=275.3
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCc
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIK 93 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~ 93 (323)
..+..++|||.||++|+.|+.+.+..++...++.++.+.||.+..+..+.+..+.+++.+||++.++++.+..+..+.++
T Consensus 92 ~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vk 171 (400)
T KOG0328|consen 92 SVRETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVK 171 (400)
T ss_pred ccceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhcccccccee
Confidence 45668999999999999999999999999999999999999998888888888899999999999999999999999999
Q ss_pred EEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceee
Q 047490 94 YLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHD 173 (323)
Q Consensus 94 ~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (323)
++|+||+|.+++.+|.+.+-.+...++..+ |.+++|||++.+..+....++..++.+.......+..++.++
T Consensus 172 mlVLDEaDemL~kgfk~Qiydiyr~lp~~~--------Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf 243 (400)
T KOG0328|consen 172 MLVLDEADEMLNKGFKEQIYDIYRYLPPGA--------QVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQF 243 (400)
T ss_pred EEEeccHHHHHHhhHHHHHHHHHHhCCCCc--------eEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhh
Confidence 999999999999999999999999998554 999999999999999999999999988877777888889999
Q ss_pred EEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCE
Q 047490 174 FIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253 (323)
Q Consensus 174 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~i 253 (323)
|+.+...+.|.+.|.++-... .-.+.+|||+++..+..+.+.+++.++.+...||+|+.++|+++..+|+. |+-+|
T Consensus 244 ~v~ve~EewKfdtLcdLYd~L--tItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRs--g~Srv 319 (400)
T KOG0328|consen 244 FVAVEKEEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRS--GKSRV 319 (400)
T ss_pred eeeechhhhhHhHHHHHhhhh--ehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhc--CCceE
Confidence 999998888999988876543 34688999999999999999999999999999999999999999999999 99999
Q ss_pred EEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHH
Q 047490 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIR 319 (323)
Q Consensus 254 lv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~ 319 (323)
|++|++..+|+|+ .+++||+||+|.+...|++|+||+||.|.+|.++-|+...|...++.|++++.
T Consensus 320 LitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~ys 386 (400)
T KOG0328|consen 320 LITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYS 386 (400)
T ss_pred EEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHh
Confidence 9999999999999 99999999999999999999999999999999999999999999999999875
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-48 Score=352.29 Aligned_cols=297 Identities=33% Similarity=0.544 Sum_probs=256.1
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcE
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKY 94 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~ 94 (323)
..++++|||+||++|+.|+.+.++++....++++..++|+.....+...+..+++|+|+||++|.+++......++++++
T Consensus 201 ~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~ 280 (545)
T PTZ00110 201 GDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTY 280 (545)
T ss_pred CCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcE
Confidence 45789999999999999999999999988889999999998877776677778999999999999999988888999999
Q ss_pred EeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcC-ceeeeccccc-ccccccee
Q 047490 95 LVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQG-IAHLRTSTLH-KKIASARH 172 (323)
Q Consensus 95 vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~ 172 (323)
||+||||++.+.+|.+.+..++..+... .|++++|||++.....+....+.. +..+...... .....+.+
T Consensus 281 lViDEAd~mld~gf~~~i~~il~~~~~~--------~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q 352 (545)
T PTZ00110 281 LVLDEADRMLDMGFEPQIRKIVSQIRPD--------RQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQ 352 (545)
T ss_pred EEeehHHhhhhcchHHHHHHHHHhCCCC--------CeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeE
Confidence 9999999999999999999998877543 399999999999888877766642 3333332222 12233444
Q ss_pred eEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCC
Q 047490 173 DFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252 (323)
Q Consensus 173 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ 252 (323)
.+..+ ....|...|.+++......+.++||||++++.|+.+++.|+..++.+..+||+++..+|..++++|++ |+.+
T Consensus 353 ~~~~~-~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~--G~~~ 429 (545)
T PTZ00110 353 EVFVV-EEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKT--GKSP 429 (545)
T ss_pred EEEEE-echhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhc--CCCc
Confidence 44333 35667888888887765567899999999999999999999999999999999999999999999999 9999
Q ss_pred EEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHhcC
Q 047490 253 TLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRKNE 322 (323)
Q Consensus 253 ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~~~ 322 (323)
|||||+++++|+|+ ++++||+||+|.+...|.||+||+||.|+.|.+++|+++.+...++.+.+.++..+
T Consensus 430 ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~ 500 (545)
T PTZ00110 430 IMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLREAK 500 (545)
T ss_pred EEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHHcc
Confidence 99999999999999 99999999999999999999999999999999999999999999999999887654
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-48 Score=348.46 Aligned_cols=290 Identities=37% Similarity=0.598 Sum_probs=265.7
Q ss_pred EEEEcCCHHHHHHHHHHHHHhcccc-ceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEeec
Q 047490 20 AVVLCPTRELSEQVFRVAKSISHHA-RFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLD 98 (323)
Q Consensus 20 ~lvl~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vIiD 98 (323)
+||++||++||.|+.+.++.+.... ++++..++||.....+...+..+++|+|+||+++++++.+..+.++.++++|+|
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlD 181 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLD 181 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEec
Confidence 9999999999999999999999988 799999999999888888787789999999999999999999999999999999
Q ss_pred chhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccccc--ccccceeeEEe
Q 047490 99 EADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHK--KIASARHDFIK 176 (323)
Q Consensus 99 E~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 176 (323)
|||+|++.+|.+.+..|+..++.. .|.+++|||++.....+...++.++..+....... ....+.+.++.
T Consensus 182 EADrmLd~Gf~~~i~~I~~~~p~~--------~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~ 253 (513)
T COG0513 182 EADRMLDMGFIDDIEKILKALPPD--------RQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLE 253 (513)
T ss_pred cHhhhhcCCCHHHHHHHHHhCCcc--------cEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEE
Confidence 999999999999999999999863 39999999999999999999999887666653333 56677777777
Q ss_pred ccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEE
Q 047490 177 LSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256 (323)
Q Consensus 177 ~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~ 256 (323)
+.....|...|..++... ...++||||++...++.+++.|...|+.+..+||++++.+|.++++.|++ |+.+||||
T Consensus 254 v~~~~~k~~~L~~ll~~~--~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~--g~~~vLVa 329 (513)
T COG0513 254 VESEEEKLELLLKLLKDE--DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKD--GELRVLVA 329 (513)
T ss_pred eCCHHHHHHHHHHHHhcC--CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHc--CCCCEEEE
Confidence 775556999999999764 44589999999999999999999999999999999999999999999999 99999999
Q ss_pred ecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCC-cHHHHHHHHHHHHhc
Q 047490 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKK-DVLLADRIEEAIRKN 321 (323)
Q Consensus 257 t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~-~~~~~~~i~~~l~~~ 321 (323)
|+++++|+|+ ++++||+||.|.+...|.||+||+||.|..|.+++|+++. |...+..+++.+++.
T Consensus 330 TDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~ 396 (513)
T COG0513 330 TDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERK 396 (513)
T ss_pred echhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 9999999999 9999999999999999999999999999999999999986 899999999987654
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-47 Score=341.76 Aligned_cols=296 Identities=28% Similarity=0.487 Sum_probs=253.8
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcE
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKY 94 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~ 94 (323)
.+++++|||+||++|+.|+.+.++.+....++++..++||.....+...+..+++|+|+||++|.+++.+....++++++
T Consensus 194 ~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~ 273 (518)
T PLN00206 194 QRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSV 273 (518)
T ss_pred cCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeE
Confidence 46789999999999999999999999888888888899987776666667778999999999999999988888999999
Q ss_pred EeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeE
Q 047490 95 LVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDF 174 (323)
Q Consensus 95 vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (323)
+|+||||++.+++|.+.+..++..+.. .|++++|||+++............+..+...........+.+.+
T Consensus 274 lViDEad~ml~~gf~~~i~~i~~~l~~---------~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~ 344 (518)
T PLN00206 274 LVLDEVDCMLERGFRDQVMQIFQALSQ---------PQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLA 344 (518)
T ss_pred EEeecHHHHhhcchHHHHHHHHHhCCC---------CcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEE
Confidence 999999999999999988888877643 38999999999998887777776665554443333333344444
Q ss_pred EeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhh-CCCeeEEecCCCCHHHHHHHHHhccccCCCCCE
Q 047490 175 IKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE-NQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253 (323)
Q Consensus 175 ~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~i 253 (323)
..+. ...|...+.+++........++||||+++..++.+++.|.. .+..+..+||+++..+|..+++.|++ |+.+|
T Consensus 345 ~~~~-~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~--G~~~I 421 (518)
T PLN00206 345 IWVE-TKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLV--GEVPV 421 (518)
T ss_pred Eecc-chhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHC--CCCCE
Confidence 4443 45577778887765444456899999999999999999975 58899999999999999999999999 99999
Q ss_pred EEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHhcC
Q 047490 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRKNE 322 (323)
Q Consensus 254 lv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~~~ 322 (323)
||||+++++|+|+ ++++||+||+|.+..+|.||+||+||.|..|.+++|++..|...+..+.+.++..+
T Consensus 422 LVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~~~ 491 (518)
T PLN00206 422 IVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKSSG 491 (518)
T ss_pred EEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHHHcC
Confidence 9999999999999 99999999999999999999999999999999999999999999999999888654
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-47 Score=337.11 Aligned_cols=294 Identities=30% Similarity=0.477 Sum_probs=253.0
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEE
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYL 95 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~v 95 (323)
.++++|||+||++|+.|+.+.++.+....++++..++|+.....+...+.++++|+|+||+++.+++....+.+++++++
T Consensus 82 ~~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~l 161 (423)
T PRK04837 82 NQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVV 161 (423)
T ss_pred CCceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEE
Confidence 46899999999999999999999999888999999999987766666677788999999999999998888889999999
Q ss_pred eecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEE
Q 047490 96 VLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFI 175 (323)
Q Consensus 96 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (323)
|+||||++.++++...+..++..++.. ...+.+++|||++..........+..+..+...........+.+.+.
T Consensus 162 ViDEad~l~~~~f~~~i~~i~~~~~~~------~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~ 235 (423)
T PRK04837 162 VLDEADRMFDLGFIKDIRWLFRRMPPA------NQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELF 235 (423)
T ss_pred EEecHHHHhhcccHHHHHHHHHhCCCc------cceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEE
Confidence 999999999999999888888777532 13367999999998888877777776655544333333333334333
Q ss_pred eccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEE
Q 047490 176 KLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255 (323)
Q Consensus 176 ~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv 255 (323)
......|...+..++... ...++||||++...|+.+++.|...+..+..+||+|+..+|..++++|++ |+++|||
T Consensus 236 -~~~~~~k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~--g~~~vLV 310 (423)
T PRK04837 236 -YPSNEEKMRLLQTLIEEE--WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTR--GDLDILV 310 (423)
T ss_pred -eCCHHHHHHHHHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHc--CCCcEEE
Confidence 334566888888877653 46799999999999999999999999999999999999999999999999 9999999
Q ss_pred EecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHh
Q 047490 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRK 320 (323)
Q Consensus 256 ~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~ 320 (323)
||+++++|+|+ ++++||+||+|.+...|.||+||+||.|+.|.+++|+++.|...+..+++.++.
T Consensus 311 aTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~ 376 (423)
T PRK04837 311 ATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGH 376 (423)
T ss_pred EechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCC
Confidence 99999999999 999999999999999999999999999999999999999999999998877654
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-47 Score=337.91 Aligned_cols=292 Identities=34% Similarity=0.566 Sum_probs=256.3
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhcccc-ceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCc
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHA-RFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIK 93 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~ 93 (323)
...+++|||+||++|+.|+.+.++.+.... ++++..++|+.....+...+..+++|+|+||+++.+++.++...+++++
T Consensus 70 ~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~ 149 (460)
T PRK11776 70 RFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALN 149 (460)
T ss_pred cCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCC
Confidence 346789999999999999999999987644 6789999999888777777778899999999999999998888899999
Q ss_pred EEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceee
Q 047490 94 YLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHD 173 (323)
Q Consensus 94 ~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (323)
++|+||+|++.+.+|...+..++..++.. .|++++|||+++........++..+..+...... ....+.+.
T Consensus 150 ~lViDEad~~l~~g~~~~l~~i~~~~~~~--------~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~ 220 (460)
T PRK11776 150 TLVLDEADRMLDMGFQDAIDAIIRQAPAR--------RQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQR 220 (460)
T ss_pred EEEEECHHHHhCcCcHHHHHHHHHhCCcc--------cEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEE
Confidence 99999999999999999999998887654 3999999999999988888887777665544332 33345566
Q ss_pred EEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCE
Q 047490 174 FIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253 (323)
Q Consensus 174 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~i 253 (323)
++... ...|...+..++... .+.++||||+++..++.+++.|.+.+..+..+||+|++.+|+.+++.|++ |+.+|
T Consensus 221 ~~~~~-~~~k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~--g~~~v 295 (460)
T PRK11776 221 FYEVS-PDERLPALQRLLLHH--QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFAN--RSCSV 295 (460)
T ss_pred EEEeC-cHHHHHHHHHHHHhc--CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHc--CCCcE
Confidence 66555 455888888888654 45789999999999999999999999999999999999999999999999 99999
Q ss_pred EEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHh
Q 047490 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRK 320 (323)
Q Consensus 254 lv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~ 320 (323)
||||+++++|+|+ ++++||+|+.|.+...|.||+||+||.|..|.+++++++.|...++.+++.++.
T Consensus 296 LVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~ 363 (460)
T PRK11776 296 LVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGR 363 (460)
T ss_pred EEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCC
Confidence 9999999999999 999999999999999999999999999999999999999999999999887754
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-46 Score=332.94 Aligned_cols=294 Identities=33% Similarity=0.519 Sum_probs=253.9
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcE
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKY 94 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~ 94 (323)
.+.+++||++||++|+.|+.+.++.+....++++..++|+.....+...+.++++|+|+||++|.+++....+.++++++
T Consensus 71 ~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~ 150 (434)
T PRK11192 71 SGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVET 150 (434)
T ss_pred CCCceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCE
Confidence 34579999999999999999999999988899999999998877777777778899999999999999988888899999
Q ss_pred EeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchh-hHHHHHHHhcCceeeeccccccccccceee
Q 047490 95 LVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKA-VQKLVDEECQGIAHLRTSTLHKKIASARHD 173 (323)
Q Consensus 95 vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (323)
||+||||++.+.+|...+..+...+... .|++++|||++.. ...+....+..+..+...........+.+.
T Consensus 151 lViDEah~~l~~~~~~~~~~i~~~~~~~--------~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~ 222 (434)
T PRK11192 151 LILDEADRMLDMGFAQDIETIAAETRWR--------KQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQW 222 (434)
T ss_pred EEEECHHHHhCCCcHHHHHHHHHhCccc--------cEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEE
Confidence 9999999999999999998887766543 3899999999754 555556666666555444443444445555
Q ss_pred EEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCE
Q 047490 174 FIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253 (323)
Q Consensus 174 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~i 253 (323)
+........|...+..++... ...++||||+++..++.+++.|+..++.+..+||+|+..+|..+++.|++ |+++|
T Consensus 223 ~~~~~~~~~k~~~l~~l~~~~--~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~--G~~~v 298 (434)
T PRK11192 223 YYRADDLEHKTALLCHLLKQP--EVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTD--GRVNV 298 (434)
T ss_pred EEEeCCHHHHHHHHHHHHhcC--CCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhC--CCCcE
Confidence 555555567777777777642 46799999999999999999999999999999999999999999999999 99999
Q ss_pred EEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHh
Q 047490 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRK 320 (323)
Q Consensus 254 lv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~ 320 (323)
||||+++++|+|+ ++++||+|++|.+...|.||+||+||.|..|.++++++..|...+..+++.+..
T Consensus 299 LVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~ 366 (434)
T PRK11192 299 LVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEE 366 (434)
T ss_pred EEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhc
Confidence 9999999999999 999999999999999999999999999999999999999999999999887754
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-46 Score=334.86 Aligned_cols=291 Identities=33% Similarity=0.498 Sum_probs=250.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEe
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLV 96 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vI 96 (323)
.+++|||+||++|+.|+.+.++.+....++++..++|+.....+...+.++++|+|+||++|.+++......+++++++|
T Consensus 75 ~~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lV 154 (456)
T PRK10590 75 PVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILV 154 (456)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEE
Confidence 45899999999999999999999998888999999999887776666777889999999999999888888899999999
Q ss_pred ecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEe
Q 047490 97 LDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIK 176 (323)
Q Consensus 97 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (323)
+||||++.++++...+..++..++.. .|.+++|||+++.........+..+..+...........+.+.+..
T Consensus 155 iDEah~ll~~~~~~~i~~il~~l~~~--------~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~ 226 (456)
T PRK10590 155 LDEADRMLDMGFIHDIRRVLAKLPAK--------RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHF 226 (456)
T ss_pred eecHHHHhccccHHHHHHHHHhCCcc--------CeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEE
Confidence 99999999999988888888777543 3899999999998888777777666555443333333344444443
Q ss_pred ccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEE
Q 047490 177 LSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256 (323)
Q Consensus 177 ~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~ 256 (323)
.....+...+..++... ...++||||+++..++.+++.|...++.+..+||+|+..+|..+++.|++ |+++||||
T Consensus 227 -~~~~~k~~~l~~l~~~~--~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~--g~~~iLVa 301 (456)
T PRK10590 227 -VDKKRKRELLSQMIGKG--NWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKS--GDIRVLVA 301 (456)
T ss_pred -cCHHHHHHHHHHHHHcC--CCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHc--CCCcEEEE
Confidence 33455666666666542 45799999999999999999999999999999999999999999999999 99999999
Q ss_pred ecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHh
Q 047490 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRK 320 (323)
Q Consensus 257 t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~ 320 (323)
|+++++|+|+ ++++||+|++|.+..+|.||+||+||.|..|.++++++..|...++.+++.++.
T Consensus 302 Tdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~ 366 (456)
T PRK10590 302 TDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKK 366 (456)
T ss_pred ccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcC
Confidence 9999999999 999999999999999999999999999999999999999999999999988764
|
|
| >KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-47 Score=302.05 Aligned_cols=302 Identities=31% Similarity=0.489 Sum_probs=270.2
Q ss_pred hhhhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcC
Q 047490 6 EAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDG 85 (323)
Q Consensus 6 ~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~ 85 (323)
+.+...-.+...-+++|+|||++||-|+...++++.+..++++...+||++..+..-.+.+..+++|+||++++++..++
T Consensus 142 P~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~Kg 221 (459)
T KOG0326|consen 142 PVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKG 221 (459)
T ss_pred hhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcc
Confidence 33444445566789999999999999999999999999999999999999988888778888999999999999999999
Q ss_pred CCCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccccc
Q 047490 86 NMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHK 165 (323)
Q Consensus 86 ~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (323)
.-.+++...+|+||||.+++..|.+.+..++..++... |++++|||+|-....+.++++..+..+..- .+.
T Consensus 222 Va~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~r--------QillySATFP~tVk~Fm~~~l~kPy~INLM-~eL 292 (459)
T KOG0326|consen 222 VADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKER--------QILLYSATFPLTVKGFMDRHLKKPYEINLM-EEL 292 (459)
T ss_pred cccchhceEEEechhhhhhchhhhhHHHHHHHhCCccc--------eeeEEecccchhHHHHHHHhccCcceeehh-hhh
Confidence 88899999999999999999999999999999998754 999999999999999999999998876554 345
Q ss_pred ccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhcc
Q 047490 166 KIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245 (323)
Q Consensus 166 ~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~ 245 (323)
...++.++|..+. ...|+..|-.++... +-.+.|||||+...+|.+++.+.+.|+++.++|+.|.+++|..+.++|+
T Consensus 293 tl~GvtQyYafV~-e~qKvhCLntLfskL--qINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr 369 (459)
T KOG0326|consen 293 TLKGVTQYYAFVE-ERQKVHCLNTLFSKL--QINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFR 369 (459)
T ss_pred hhcchhhheeeec-hhhhhhhHHHHHHHh--cccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhh
Confidence 5667777776665 455666555555432 3357899999999999999999999999999999999999999999999
Q ss_pred ccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHhc
Q 047490 246 NEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRKN 321 (323)
Q Consensus 246 ~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~~ 321 (323)
+ |.|+.||||+.+.+|+|+ .++.||+||.|++..+|.+|+||+||.|..|.++.+++-.|...+.+|++.|+..
T Consensus 370 ~--G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtE 444 (459)
T KOG0326|consen 370 N--GKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTE 444 (459)
T ss_pred c--cccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccc
Confidence 9 999999999999999999 9999999999999999999999999999999999999999999999999999753
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-46 Score=339.77 Aligned_cols=293 Identities=34% Similarity=0.506 Sum_probs=252.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcC-CCCCCCCcEE
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDG-NMVYGDIKYL 95 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~-~~~~~~~~~v 95 (323)
.+++|||+||++|+.|+.+.++.+....++++..++|+.....+...+.++++|+|+||++|++++... .+.++.++++
T Consensus 84 ~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~l 163 (572)
T PRK04537 84 DPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEIC 163 (572)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeee
Confidence 589999999999999999999999988899999999998877777777778899999999999988765 4668899999
Q ss_pred eecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEE
Q 047490 96 VLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFI 175 (323)
Q Consensus 96 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (323)
|+||+|++.+.+|...+..++..++... ..|++++|||++..........+..+..+...........+.+.++
T Consensus 164 ViDEAh~lld~gf~~~i~~il~~lp~~~------~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~ 237 (572)
T PRK04537 164 VLDEADRMFDLGFIKDIRFLLRRMPERG------TRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIY 237 (572)
T ss_pred EecCHHHHhhcchHHHHHHHHHhccccc------CceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEE
Confidence 9999999999999999998888876531 3489999999998888877777766544433322223333444444
Q ss_pred eccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEE
Q 047490 176 KLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255 (323)
Q Consensus 176 ~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv 255 (323)
. .....|...+..++... .+.++||||++...++.+++.|...++.+..+||+|+..+|..+++.|++ |+.+|||
T Consensus 238 ~-~~~~~k~~~L~~ll~~~--~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~--G~~~VLV 312 (572)
T PRK04537 238 F-PADEEKQTLLLGLLSRS--EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQK--GQLEILV 312 (572)
T ss_pred e-cCHHHHHHHHHHHHhcc--cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHc--CCCeEEE
Confidence 3 44567888888887653 56799999999999999999999999999999999999999999999999 9999999
Q ss_pred EecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHh
Q 047490 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRK 320 (323)
Q Consensus 256 ~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~ 320 (323)
||+++++|+|+ ++++||+|+.|.+...|.||+||+||.|+.|.+++|++..+...+..+++.++.
T Consensus 313 aTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~ 378 (572)
T PRK04537 313 ATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQ 378 (572)
T ss_pred EehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcC
Confidence 99999999999 999999999999999999999999999999999999999999999999887654
|
|
| >KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-46 Score=315.71 Aligned_cols=307 Identities=30% Similarity=0.498 Sum_probs=277.2
Q ss_pred hhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCC
Q 047490 8 MLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNM 87 (323)
Q Consensus 8 ~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~ 87 (323)
|........+|++++|.||++|++|+.++-.+++...+.+++.+.||...+++--.+..+|.|+|+||++|...+.+..+
T Consensus 313 ~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~l 392 (673)
T KOG0333|consen 313 MARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYL 392 (673)
T ss_pred cchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHH
Confidence 34444556789999999999999999999999999999999999999988887667788899999999999999999889
Q ss_pred CCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCC-----CCC------------ceEEEEEeecchhhHHHHHH
Q 047490 88 VYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPN-----GQG------------FQTVLVSATMTKAVQKLVDE 150 (323)
Q Consensus 88 ~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~-----~~~------------~~~i~~sat~~~~~~~~~~~ 150 (323)
.++++.++|+|||++|.+.+|.+.+..++..++.....++ +.. .|.++||||+++....+...
T Consensus 393 vl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ 472 (673)
T KOG0333|consen 393 VLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARS 472 (673)
T ss_pred HhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHH
Confidence 9999999999999999999999999999999987655421 111 79999999999999999999
Q ss_pred HhcCceeeeccccccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecC
Q 047490 151 ECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHG 230 (323)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~ 230 (323)
++..++...+...-.+.+.+.+.+..++ .+.|...|.+++... -..++|||+|+.+.|+.+++.|.+.++.+..+||
T Consensus 473 ylr~pv~vtig~~gk~~~rveQ~v~m~~-ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg 549 (673)
T KOG0333|consen 473 YLRRPVVVTIGSAGKPTPRVEQKVEMVS-EDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHG 549 (673)
T ss_pred HhhCCeEEEeccCCCCccchheEEEEec-chHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEEEeeC
Confidence 9999999988888777777777776665 566799999999876 3469999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHH
Q 047490 231 EVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309 (323)
Q Consensus 231 ~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 309 (323)
+-+.++|+..++.|++ |...|||||+++++|||+ ++.+||+||+++|..+|.+|+||.||.|+.|.+++|+++.|-.
T Consensus 550 ~k~qeQRe~aL~~fr~--~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~ 627 (673)
T KOG0333|consen 550 GKSQEQRENALADFRE--GTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTA 627 (673)
T ss_pred CccHHHHHHHHHHHHh--cCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhH
Confidence 9999999999999999 999999999999999999 9999999999999999999999999999999999999999987
Q ss_pred HHHHHHHHHH
Q 047490 310 LADRIEEAIR 319 (323)
Q Consensus 310 ~~~~i~~~l~ 319 (323)
....+.+.+.
T Consensus 628 v~ydLkq~l~ 637 (673)
T KOG0333|consen 628 VFYDLKQALR 637 (673)
T ss_pred HHHHHHHHHH
Confidence 7777776665
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-46 Score=340.06 Aligned_cols=293 Identities=31% Similarity=0.501 Sum_probs=256.0
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHhcccc-ceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCC
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHA-RFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDI 92 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~ 92 (323)
..+++++|||+||++|+.|+++.++.+.... ++++..++|+.....+...+..+++|+|+||+++.+.+.+..+.++++
T Consensus 71 ~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l 150 (629)
T PRK11634 71 ELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKL 150 (629)
T ss_pred ccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhc
Confidence 3456899999999999999999999987654 688999999987777666777789999999999999999888889999
Q ss_pred cEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccccccccccee
Q 047490 93 KYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARH 172 (323)
Q Consensus 93 ~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (323)
++||+||||.+++.+|...+..++..++... |.+++|||+++........++..+..+.........+.+.+
T Consensus 151 ~~lVlDEAd~ml~~gf~~di~~Il~~lp~~~--------q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q 222 (629)
T PRK11634 151 SGLVLDEADEMLRMGFIEDVETIMAQIPEGH--------QTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQ 222 (629)
T ss_pred eEEEeccHHHHhhcccHHHHHHHHHhCCCCC--------eEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEE
Confidence 9999999999999999999999988876543 89999999999998888888877766554444334445555
Q ss_pred eEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCC
Q 047490 173 DFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252 (323)
Q Consensus 173 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ 252 (323)
.+..+. ...|...|..++... ...++||||+++..++.+++.|.+.++.+..+||+|++.+|+.++++|++ |+.+
T Consensus 223 ~~~~v~-~~~k~~~L~~~L~~~--~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~--G~~~ 297 (629)
T PRK11634 223 SYWTVW-GMRKNEALVRFLEAE--DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKD--GRLD 297 (629)
T ss_pred EEEEec-hhhHHHHHHHHHHhc--CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhC--CCCC
Confidence 555443 456888888888653 45689999999999999999999999999999999999999999999999 9999
Q ss_pred EEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHH
Q 047490 253 TLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIR 319 (323)
Q Consensus 253 ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~ 319 (323)
|||||+++++|+|+ ++++||+||.|.+...|.||+||+||.|+.|.+++++...|...++.|++.++
T Consensus 298 ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~ 365 (629)
T PRK11634 298 ILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMK 365 (629)
T ss_pred EEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhC
Confidence 99999999999999 99999999999999999999999999999999999999999989999888755
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=330.12 Aligned_cols=294 Identities=30% Similarity=0.507 Sum_probs=250.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc-CCCCCEEEeChHHHHHHHHcCCCCCCCCcEE
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL-NNPIDMVVGTPGRILQHIEDGNMVYGDIKYL 95 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~v 95 (323)
.+++|||+||++|+.|+.+.++.+....++++..++|+.+...+.+.+ ...++|+|+||++|..++.++...++++++|
T Consensus 162 ~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~l 241 (475)
T PRK01297 162 EPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVM 241 (475)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceE
Confidence 579999999999999999999999888889999999987766555444 4568999999999999988888889999999
Q ss_pred eecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEE
Q 047490 96 VLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFI 175 (323)
Q Consensus 96 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (323)
|+||+|++.+.++...+..++..+... .+.|++++|||++.........++..+..+.............+++.
T Consensus 242 ViDEah~l~~~~~~~~l~~i~~~~~~~------~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 315 (475)
T PRK01297 242 VLDEADRMLDMGFIPQVRQIIRQTPRK------EERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVY 315 (475)
T ss_pred EechHHHHHhcccHHHHHHHHHhCCCC------CCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEE
Confidence 999999999988988888888766432 13489999999998888877777766655444333333333444444
Q ss_pred eccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEE
Q 047490 176 KLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255 (323)
Q Consensus 176 ~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv 255 (323)
... ...|...+.+++... ...++||||+++..++.+++.|...++.+..+||+++.++|.++++.|++ |++++||
T Consensus 316 ~~~-~~~k~~~l~~ll~~~--~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~--G~~~vLv 390 (475)
T PRK01297 316 AVA-GSDKYKLLYNLVTQN--PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFRE--GKIRVLV 390 (475)
T ss_pred Eec-chhHHHHHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhC--CCCcEEE
Confidence 433 455777777777653 45699999999999999999999999999999999999999999999999 9999999
Q ss_pred EecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHhc
Q 047490 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRKN 321 (323)
Q Consensus 256 ~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~~ 321 (323)
||+++++|+|+ ++++||++++|.|...|.||+||+||.|+.|.+++++...|...+..+++.++++
T Consensus 391 aT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~ 457 (475)
T PRK01297 391 ATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRK 457 (475)
T ss_pred EccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCC
Confidence 99999999999 9999999999999999999999999999999999999999999999999988765
|
|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=320.29 Aligned_cols=294 Identities=28% Similarity=0.488 Sum_probs=250.2
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcE
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKY 94 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~ 94 (323)
.++.++|||+|+++|+.|+.+.++.+....++.+..+.|+.........+..+++|+|+||+++...+.+....++++++
T Consensus 94 ~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~l 173 (401)
T PTZ00424 94 LNACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKL 173 (401)
T ss_pred CCCceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccE
Confidence 45779999999999999999999999877778888888887766655666677899999999999999887778999999
Q ss_pred EeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeE
Q 047490 95 LVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDF 174 (323)
Q Consensus 95 vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (323)
+|+||+|++.+.++...+..++..+.. +.|++++|||+++........+...+..............+.+.+
T Consensus 174 vViDEah~~~~~~~~~~~~~i~~~~~~--------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (401)
T PTZ00424 174 FILDEADEMLSRGFKGQIYDVFKKLPP--------DVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFY 245 (401)
T ss_pred EEEecHHHHHhcchHHHHHHHHhhCCC--------CcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEE
Confidence 999999999988888777777766543 349999999999988887777776665444333333444555666
Q ss_pred EeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEE
Q 047490 175 IKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254 (323)
Q Consensus 175 ~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~il 254 (323)
........+...+.+.+... ...++||||+++.+++.+++.|.+.+..+..+||+++..+|..++++|++ |+++||
T Consensus 246 ~~~~~~~~~~~~l~~~~~~~--~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~--g~~~vL 321 (401)
T PTZ00424 246 VAVEKEEWKFDTLCDLYETL--TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRS--GSTRVL 321 (401)
T ss_pred EecChHHHHHHHHHHHHHhc--CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHc--CCCCEE
Confidence 65555555667777766543 44689999999999999999999999999999999999999999999999 999999
Q ss_pred EEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHh
Q 047490 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRK 320 (323)
Q Consensus 255 v~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~ 320 (323)
|||+.+++|+|+ ++++||++++|.+...|.||+||+||.|+.|.|+++++..+...++.+++.+..
T Consensus 322 vaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~ 388 (401)
T PTZ00424 322 ITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNT 388 (401)
T ss_pred EEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCC
Confidence 999999999999 999999999999999999999999999999999999999999999999887754
|
|
| >KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-45 Score=305.41 Aligned_cols=299 Identities=32% Similarity=0.474 Sum_probs=279.8
Q ss_pred cCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCC
Q 047490 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDI 92 (323)
Q Consensus 13 ~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~ 92 (323)
....+|..+|||||++|+.|+..+++++.+..+++++.+|||....++...+..++.|+|+||++|.+++..+...+.++
T Consensus 292 ~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rv 371 (731)
T KOG0339|consen 292 KPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRV 371 (731)
T ss_pred cCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceee
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccccccccccee
Q 047490 93 KYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARH 172 (323)
Q Consensus 93 ~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (323)
.++|+||+++|++.+|.+.++.|...++... |.++||||+...+....+..+..++..........-..+.+
T Consensus 372 S~LV~DEadrmfdmGfe~qVrSI~~hirpdr--------QtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ 443 (731)
T KOG0339|consen 372 SYLVLDEADRMFDMGFEPQVRSIKQHIRPDR--------QTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQ 443 (731)
T ss_pred eEEEEechhhhhccccHHHHHHHHhhcCCcc--------eEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhh
Confidence 9999999999999999999999999887654 99999999999999999999999988777766677777888
Q ss_pred eEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCC
Q 047490 173 DFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252 (323)
Q Consensus 173 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ 252 (323)
.+..+...+.|+++|+..|.++.+ .+++|+|+.-...++.++..|+-.++.+..+||+|.+.+|.+++.+|+. +.+.
T Consensus 444 ~V~V~~s~~~Kl~wl~~~L~~f~S-~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKk--k~~~ 520 (731)
T KOG0339|consen 444 TVSVCPSEEKKLNWLLRHLVEFSS-EGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKK--KRKP 520 (731)
T ss_pred eeeeccCcHHHHHHHHHHhhhhcc-CCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhh--cCCc
Confidence 888888889999999999988644 4699999999999999999999999999999999999999999999999 9999
Q ss_pred EEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHhcC
Q 047490 253 TLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRKNE 322 (323)
Q Consensus 253 ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~~~ 322 (323)
|+++|+...+|+|+ .+..||+||.-.+...|.||+||.||.|.+|..+++++.+|......+.+.|+.-+
T Consensus 521 VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe~ag 591 (731)
T KOG0339|consen 521 VLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEGAG 591 (731)
T ss_pred eEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHhhcc
Confidence 99999999999999 99999999999999999999999999999999999999999999999999887543
|
|
| >KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=307.40 Aligned_cols=300 Identities=35% Similarity=0.562 Sum_probs=269.0
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEE
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYL 95 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~v 95 (323)
.+|+++||+||++|+.|++++.+++....++++..++|+.+...+.+....+++|+|+||++|.+++..+.+.+++++++
T Consensus 151 ~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~ 230 (482)
T KOG0335|consen 151 VYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFL 230 (482)
T ss_pred CCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEE
Confidence 36999999999999999999999999999999999999988888888889999999999999999999999999999999
Q ss_pred eecchhhhhc-CCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcC-ceeeeccccccccccceee
Q 047490 96 VLDEADTMFD-RGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQG-IAHLRTSTLHKKIASARHD 173 (323)
Q Consensus 96 IiDE~h~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 173 (323)
|+||||+|++ -+|.+.++.|+........ .+.|.++||||.+..+......++.. +..+..........++.+.
T Consensus 231 vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~----~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~ 306 (482)
T KOG0335|consen 231 VLDEADRMLDEMGFEPQIRKIVEQLGMPPK----NNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQK 306 (482)
T ss_pred EecchHHhhhhccccccHHHHhcccCCCCc----cceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeE
Confidence 9999999999 8899999999988765322 24599999999999998877777665 5566666666677777787
Q ss_pred EEeccCChhHHHHHHHHhccCCCC--C-----CeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccc
Q 047490 174 FIKLSGSENKLEALLQVLEPSLSK--G-----NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN 246 (323)
Q Consensus 174 ~~~~~~~~~k~~~l~~~l~~~~~~--~-----~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 246 (323)
+.++. ..+|...|++++...... . ++++|||.+.+.|..++.+|...+++...+||+-++.+|.+.+..|+.
T Consensus 307 i~~V~-~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~ 385 (482)
T KOG0335|consen 307 ILFVN-EMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRN 385 (482)
T ss_pred eeeec-chhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhc
Confidence 77776 466888888888754311 2 389999999999999999999999999999999999999999999999
Q ss_pred cCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHhcC
Q 047490 247 EDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRKNE 322 (323)
Q Consensus 247 ~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~~~ 322 (323)
|.+.+||||.++++|+|+ +++|||+||+|.+..+|.+|+||+||.|+.|.+.+|++..+....+.+.+.+...+
T Consensus 386 --g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ea~ 460 (482)
T KOG0335|consen 386 --GKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTEAN 460 (482)
T ss_pred --CCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHHhc
Confidence 999999999999999999 99999999999999999999999999999999999999999999999999887654
|
|
| >KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-45 Score=299.18 Aligned_cols=299 Identities=32% Similarity=0.505 Sum_probs=267.3
Q ss_pred cCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCC
Q 047490 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDI 92 (323)
Q Consensus 13 ~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~ 92 (323)
....+|.+|++.||++|+.|+.-+..++. ..+++..+++|+.+...+.+.+..+.+|+++||++|.++...+...+.++
T Consensus 290 ~qr~~p~~lvl~ptreLalqie~e~~kys-yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~si 368 (629)
T KOG0336|consen 290 EQRNGPGVLVLTPTRELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASI 368 (629)
T ss_pred hccCCCceEEEeccHHHHHHHHhHHhHhh-hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeee
Confidence 35668999999999999999999988885 45889999999999999999999999999999999999999999999999
Q ss_pred cEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccccccccccee
Q 047490 93 KYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARH 172 (323)
Q Consensus 93 ~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (323)
.|+|+|||++|++.+|.+.++.|+..++.. .|.++.|||+|+.+.++.+.++..+............-....
T Consensus 369 TYlVlDEADrMLDMgFEpqIrkilldiRPD--------RqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVk 440 (629)
T KOG0336|consen 369 TYLVLDEADRMLDMGFEPQIRKILLDIRPD--------RQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVK 440 (629)
T ss_pred EEEEecchhhhhcccccHHHHHHhhhcCCc--------ceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeee
Confidence 999999999999999999999999887654 499999999999999999999999877666665555545445
Q ss_pred eEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCC
Q 047490 173 DFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252 (323)
Q Consensus 173 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ 252 (323)
+++.++....|.+.+-..+. ......|+||||.+...|..+..-|.-.|+..-.+||+-.+.+|+..+++|+. |+++
T Consensus 441 Q~i~v~~d~~k~~~~~~f~~-~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ks--G~vr 517 (629)
T KOG0336|consen 441 QNIIVTTDSEKLEIVQFFVA-NMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKS--GEVR 517 (629)
T ss_pred eeEEecccHHHHHHHHHHHH-hcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhc--CceE
Confidence 55566666777754444443 34567899999999999999999888889999999999999999999999999 9999
Q ss_pred EEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHhcCC
Q 047490 253 TLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRKNES 323 (323)
Q Consensus 253 ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~~~~ 323 (323)
|||+|+.+.+|+|+ +++||++||+|.+..+|.+|+||.||.|..|..+++++..|....+.+.++|++.++
T Consensus 518 ILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~aeQ 589 (629)
T KOG0336|consen 518 ILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILERAEQ 589 (629)
T ss_pred EEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHHHHhhh
Confidence 99999999999999 999999999999999999999999999999999999999999999999999988653
|
|
| >KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=303.57 Aligned_cols=292 Identities=31% Similarity=0.513 Sum_probs=264.4
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcC-CCCCCCC
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDG-NMVYGDI 92 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~-~~~~~~~ 92 (323)
+....+|||||||++|+-|+....+++.....+.+.++.||.+...+...+..+++|+|+||++|.+.+.+. ++.++++
T Consensus 249 ~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsi 328 (691)
T KOG0338|consen 249 KVAATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSI 328 (691)
T ss_pred cCcceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccce
Confidence 344589999999999999999999999988899999999999999999999999999999999998888774 6779999
Q ss_pred cEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccccccccccee
Q 047490 93 KYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARH 172 (323)
Q Consensus 93 ~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (323)
..+|+||||+|++.+|.+.+..|+..++... |..+||||+...+..+..-.+..++.+.........+...+
T Consensus 329 EVLvlDEADRMLeegFademnEii~lcpk~R--------QTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQ 400 (691)
T KOG0338|consen 329 EVLVLDEADRMLEEGFADEMNEIIRLCPKNR--------QTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQ 400 (691)
T ss_pred eEEEechHHHHHHHHHHHHHHHHHHhccccc--------cceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhH
Confidence 9999999999999999999999999888654 99999999999999999999999999888877778888888
Q ss_pred eEEeccCC--hhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCC
Q 047490 173 DFIKLSGS--ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250 (323)
Q Consensus 173 ~~~~~~~~--~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~ 250 (323)
.|+.+.+. ..+-..+..++...+ ..++|||+.+.+.|+.+.-.|--.|..++.+||.+++.+|-+.++.|+. ++
T Consensus 401 EFiRIR~~re~dRea~l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~--~e 476 (691)
T KOG0338|consen 401 EFIRIRPKREGDREAMLASLITRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKK--EE 476 (691)
T ss_pred HHheeccccccccHHHHHHHHHHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHh--cc
Confidence 88877643 234444455555443 4699999999999999999988889999999999999999999999999 99
Q ss_pred CCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHH
Q 047490 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317 (323)
Q Consensus 251 ~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~ 317 (323)
+++||||+++.+|+|+ .+..||+|.+|.+...|.+|+||..|.|..|.+++|+...|...++.|.+.
T Consensus 477 idvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 477 IDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred CCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 9999999999999999 999999999999999999999999999999999999999999999888766
|
|
| >KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=291.42 Aligned_cols=290 Identities=30% Similarity=0.520 Sum_probs=252.5
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhcccc-ceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcC-CCCCCCC
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHA-RFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDG-NMVYGDI 92 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~-~~~~~~~ 92 (323)
.++..++|++||++|+.|++.+++++...+ ++.+..+-||.+.....+.+..+++|+|+||++|.+.+++. .+...+.
T Consensus 152 r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~ 231 (543)
T KOG0342|consen 152 RNGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNL 231 (543)
T ss_pred CCCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhcc
Confidence 456789999999999999999999999988 89999999999988888888779999999999999999884 4667788
Q ss_pred cEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcC-ceee--ecccccccccc
Q 047490 93 KYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQG-IAHL--RTSTLHKKIAS 169 (323)
Q Consensus 93 ~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~ 169 (323)
+++|+||||++++.+|.+.+..|+..++... |..++|||.++.+.+.....+.. +..+ .......+...
T Consensus 232 k~lvlDEADrlLd~GF~~di~~Ii~~lpk~r--------qt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~ 303 (543)
T KOG0342|consen 232 KCLVLDEADRLLDIGFEEDVEQIIKILPKQR--------QTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHER 303 (543)
T ss_pred ceeEeecchhhhhcccHHHHHHHHHhccccc--------eeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhc
Confidence 9999999999999999999999999998654 99999999999998887766655 2222 22233334445
Q ss_pred ceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCC
Q 047490 170 ARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249 (323)
Q Consensus 170 ~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g 249 (323)
+.+-|+..+ .+.+.-.+..+|+++... .++||||+|...+..+++.|+..++++..+||+.++..|-.+..+|++ .
T Consensus 304 l~Qgyvv~~-~~~~f~ll~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~k--a 379 (543)
T KOG0342|consen 304 LEQGYVVAP-SDSRFSLLYTFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCK--A 379 (543)
T ss_pred ccceEEecc-ccchHHHHHHHHHHhcCC-ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhh--c
Confidence 555555544 455678888888886443 899999999999999999999999999999999999999999999999 7
Q ss_pred CCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHH
Q 047490 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEE 316 (323)
Q Consensus 250 ~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~ 316 (323)
+-.||+||++.++|+|+ +++.||.||+|.++.+|++|+||.||.|+.|.++.+..+.|...++.+++
T Consensus 380 esgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK~ 447 (543)
T KOG0342|consen 380 ESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLKK 447 (543)
T ss_pred ccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHhh
Confidence 77899999999999999 99999999999999999999999999999999999999999999888873
|
|
| >KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=281.14 Aligned_cols=300 Identities=25% Similarity=0.437 Sum_probs=260.6
Q ss_pred hhhccc-cCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHc-
Q 047490 7 AMLGVL-MKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIED- 84 (323)
Q Consensus 7 ~~~~~~-~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~- 84 (323)
+|+..+ +....|++++|+||++||.|+.+.+.++++..++......-+..... -..+ ..+|+|+||+.+.+++..
T Consensus 149 ~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~r-G~~i--~eqIviGTPGtv~Dlm~kl 225 (477)
T KOG0332|consen 149 TMLSRVDPDVVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKR-GNKL--TEQIVIGTPGTVLDLMLKL 225 (477)
T ss_pred HHHHhcCccccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCccccc-CCcc--hhheeeCCCccHHHHHHHH
Confidence 344443 34668999999999999999999999999888777777666642211 1112 248999999999999888
Q ss_pred CCCCCCCCcEEeecchhhhhc-CCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccc
Q 047490 85 GNMVYGDIKYLVLDEADTMFD-RGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTL 163 (323)
Q Consensus 85 ~~~~~~~~~~vIiDE~h~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~ 163 (323)
..+.++.++.+|+|||+.+++ .||.+.-..|+..++..+ |.+++|||.......+..+.......+.....
T Consensus 226 k~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~--------QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~e 297 (477)
T KOG0332|consen 226 KCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQ--------QLLLFSATFVEKVAAFALKIVPNANVIILKRE 297 (477)
T ss_pred HhhChhhceEEEecchhhhhhcccccccchhhhhhcCCcc--------eEEeeechhHHHHHHHHHHhcCCCceeeeehh
Confidence 678899999999999999875 568898888888887543 99999999999999999999999988888888
Q ss_pred ccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHh
Q 047490 164 HKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNK 243 (323)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 243 (323)
......+.++++.+...++|.+.|.++. ... .-++.||||.++++|..++..+.+.|..|..+||+|...+|..++++
T Consensus 298 el~L~~IkQlyv~C~~~~~K~~~l~~ly-g~~-tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~ 375 (477)
T KOG0332|consen 298 ELALDNIKQLYVLCACRDDKYQALVNLY-GLL-TIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDR 375 (477)
T ss_pred hccccchhhheeeccchhhHHHHHHHHH-hhh-hhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHH
Confidence 8999999999999999999999999844 332 34688999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCEEEEecccccccCC-CCCEEEEcCCCC------CchhhhhhhcccccCCCcceEEEEeeCC-cHHHHHHHH
Q 047490 244 FKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPL------NSIDYLHRTGRTARMGAKGKVTSLVAKK-DVLLADRIE 315 (323)
Q Consensus 244 f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~------s~~~~~Q~~GR~~R~~~~g~~~~~~~~~-~~~~~~~i~ 315 (323)
|++ |..+|||+|+++.+|+|+ .++.||+||+|. ++.+|.+|+||+||.|++|.++.++..+ ....+..|+
T Consensus 376 Fr~--g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq 453 (477)
T KOG0332|consen 376 FRE--GKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQ 453 (477)
T ss_pred Hhc--CcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHH
Confidence 999 999999999999999999 999999999995 7889999999999999999999999876 556888999
Q ss_pred HHHHhc
Q 047490 316 EAIRKN 321 (323)
Q Consensus 316 ~~l~~~ 321 (323)
++++.+
T Consensus 454 ~~F~~~ 459 (477)
T KOG0332|consen 454 KHFNMK 459 (477)
T ss_pred HHHhhc
Confidence 998654
|
|
| >KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-42 Score=277.26 Aligned_cols=304 Identities=31% Similarity=0.477 Sum_probs=258.9
Q ss_pred hhhccccC-CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcC
Q 047490 7 AMLGVLMK-PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDG 85 (323)
Q Consensus 7 ~~~~~~~~-~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~ 85 (323)
.++..+++ +.+--++|++||++|+-|+++.|...+...++++..++||.+.-.+...+.++++++|+||+++...+..+
T Consensus 64 Pil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn 143 (442)
T KOG0340|consen 64 PILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSN 143 (442)
T ss_pred HHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccC
Confidence 45556665 44688999999999999999999999999999999999999988888888889999999999998887765
Q ss_pred ----CCCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcC--ceeee
Q 047490 86 ----NMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQG--IAHLR 159 (323)
Q Consensus 86 ----~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~--~~~~~ 159 (323)
...+++++++|+|||+++++..|.+.+..+...++... |.+++|||+.+............ ..++.
T Consensus 144 ~~~~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~lP~~R--------QtLlfSATitd~i~ql~~~~i~k~~a~~~e 215 (442)
T KOG0340|consen 144 LGVCSWIFQRLKFLVLDEADRVLAGCFPDILEGIEECLPKPR--------QTLLFSATITDTIKQLFGCPITKSIAFELE 215 (442)
T ss_pred CccchhhhhceeeEEecchhhhhccchhhHHhhhhccCCCcc--------ceEEEEeehhhHHHHhhcCCcccccceEEe
Confidence 24578899999999999999999999999998887653 99999999988777654333332 12222
Q ss_pred ccccccccccceeeEEeccCChhHHHHHHHHhccCCC-CCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHH
Q 047490 160 TSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLS-KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERV 238 (323)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~ 238 (323)
............+.|+.++ .+.|-.-+...|..+.+ ..+.++||+++..+|+.++..|+..+..+..+|+.|++.+|-
T Consensus 216 ~~~~vstvetL~q~yI~~~-~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~ 294 (442)
T KOG0340|consen 216 VIDGVSTVETLYQGYILVS-IDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERL 294 (442)
T ss_pred ccCCCCchhhhhhheeecc-hhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHH
Confidence 2222233344455555554 45576777777777654 457899999999999999999999999999999999999999
Q ss_pred HHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHH
Q 047490 239 ENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317 (323)
Q Consensus 239 ~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~ 317 (323)
.-+.+|+. +..+|||||+++++|+|+ .++.||+|+.|.++.+|++|+||..|.|..|.++++++..|...+..|++.
T Consensus 295 ~aLsrFrs--~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~ 372 (442)
T KOG0340|consen 295 AALSRFRS--NAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEE 372 (442)
T ss_pred HHHHHHhh--cCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHH
Confidence 99999999 999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred HHhc
Q 047490 318 IRKN 321 (323)
Q Consensus 318 l~~~ 321 (323)
.+++
T Consensus 373 igkK 376 (442)
T KOG0340|consen 373 IGKK 376 (442)
T ss_pred Hhcc
Confidence 8875
|
|
| >KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=282.28 Aligned_cols=292 Identities=28% Similarity=0.475 Sum_probs=248.0
Q ss_pred hhhccccCCCC--ccEEEEcCCHHHHHHHHHHHHHhccc-cceeEEEeecCccCCcccccc-CCCCCEEEeChHHHHHHH
Q 047490 7 AMLGVLMKPRR--PRAVVLCPTRELSEQVFRVAKSISHH-ARFRSTMVSGGGRLRPQEDSL-NNPIDMVVGTPGRILQHI 82 (323)
Q Consensus 7 ~~~~~~~~~~~--~~~lvl~P~~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~Iii~Tp~~l~~~~ 82 (323)
-++..-.+.++ ..+||++|||+|+.|+.+.+..+... ..+++.++.||.........+ ..+++|+|+||+++.+++
T Consensus 67 ~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~ 146 (567)
T KOG0345|consen 67 IIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDIL 146 (567)
T ss_pred HHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHH
Confidence 33334444333 47999999999999999999999887 578999999997766655544 457899999999999999
Q ss_pred HcCC--CCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeec
Q 047490 83 EDGN--MVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRT 160 (323)
Q Consensus 83 ~~~~--~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~ 160 (323)
.+.. +.+.++.++|+||||++++.||...++.|+..++... +.=++|||...+..+...-.+.+++.+..
T Consensus 147 ~~~~~~l~~rsLe~LVLDEADrLldmgFe~~~n~ILs~LPKQR--------RTGLFSATq~~~v~dL~raGLRNpv~V~V 218 (567)
T KOG0345|consen 147 QREAEKLSFRSLEILVLDEADRLLDMGFEASVNTILSFLPKQR--------RTGLFSATQTQEVEDLARAGLRNPVRVSV 218 (567)
T ss_pred hchhhhccccccceEEecchHhHhcccHHHHHHHHHHhccccc--------ccccccchhhHHHHHHHHhhccCceeeee
Confidence 9854 4455999999999999999999999999999998765 88899999999999988888998887655
Q ss_pred ccccc--ccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC--CCeeEEecCCCCHHH
Q 047490 161 STLHK--KIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN--QISTVNYHGEVPAQE 236 (323)
Q Consensus 161 ~~~~~--~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~ 236 (323)
..... .+.....+|..+. .+.|...++++|... ..+++|||.++...++-.+..|... ...+..+||.|....
T Consensus 219 ~~k~~~~tPS~L~~~Y~v~~-a~eK~~~lv~~L~~~--~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~ 295 (567)
T KOG0345|consen 219 KEKSKSATPSSLALEYLVCE-ADEKLSQLVHLLNNN--KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKA 295 (567)
T ss_pred cccccccCchhhcceeeEec-HHHHHHHHHHHHhcc--ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchh
Confidence 54443 4444555555554 577999999999874 5689999999999999999988765 678889999999999
Q ss_pred HHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHH
Q 047490 237 RVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311 (323)
Q Consensus 237 r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~ 311 (323)
|..+++.|+. ..-.+|+||+++.+|+|+ +++.||+||+|.++.-|.+|+||++|.|..|.+++|..+.+....
T Consensus 296 R~k~~~~F~~--~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYv 369 (567)
T KOG0345|consen 296 RAKVLEAFRK--LSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYV 369 (567)
T ss_pred HHHHHHHHHh--ccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHH
Confidence 9999999998 666699999999999999 999999999999999999999999999999999999999766543
|
|
| >KOG0343 consensus RNA Helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=287.40 Aligned_cols=292 Identities=28% Similarity=0.488 Sum_probs=254.3
Q ss_pred ccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCC-CCCC
Q 047490 12 LMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGN-MVYG 90 (323)
Q Consensus 12 ~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~-~~~~ 90 (323)
+....|--+||+.|||+||.|+.+.+.+.+..++.+.+.+-||.+.......+. +.+|+||||++|+..+.... +.-+
T Consensus 136 Ws~~DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~f~t~ 214 (758)
T KOG0343|consen 136 WSPTDGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENPNFSTS 214 (758)
T ss_pred CCCCCCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCCCCCC
Confidence 345668899999999999999999999999999999999999988665544444 48999999999999988764 5577
Q ss_pred CCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccc-c-ccc
Q 047490 91 DIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLH-K-KIA 168 (323)
Q Consensus 91 ~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~ 168 (323)
++.++|+|||+++++.||...+..|+..++... |.+++|||....+.+.....+.++..+...... . .+.
T Consensus 215 ~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~R--------QTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~ 286 (758)
T KOG0343|consen 215 NLQMLVLDEADRMLDMGFKKTLNAIIENLPKKR--------QTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPS 286 (758)
T ss_pred cceEEEeccHHHHHHHhHHHHHHHHHHhCChhh--------eeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChh
Confidence 899999999999999999999999999998765 999999999999999998888888776655222 2 333
Q ss_pred cceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC--CCeeEEecCCCCHHHHHHHHHhccc
Q 047490 169 SARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN--QISTVNYHGEVPAQERVENLNKFKN 246 (323)
Q Consensus 169 ~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~ 246 (323)
...++|+ +....+|+..|...+..++ ..++|||+.+.+++..+++.|... |.++..+||.|++..|-++..+|.+
T Consensus 287 ~L~Q~y~-~v~l~~Ki~~L~sFI~shl--k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~ 363 (758)
T KOG0343|consen 287 NLQQSYV-IVPLEDKIDMLWSFIKSHL--KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVR 363 (758)
T ss_pred hhhheEE-EEehhhHHHHHHHHHHhcc--ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHH
Confidence 4445554 4457889999999999874 469999999999999999998865 7888999999999999999999998
Q ss_pred cCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCc-HHHHHHHHHH
Q 047490 247 EDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD-VLLADRIEEA 317 (323)
Q Consensus 247 ~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~-~~~~~~i~~~ 317 (323)
.+-.||+||+++.+|+|+ .++.||.+|+|.+..+|++|+||..|.+..|.++++.++.+ ...+..+++.
T Consensus 364 --~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k 434 (758)
T KOG0343|consen 364 --KRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKK 434 (758)
T ss_pred --hcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHc
Confidence 777899999999999999 99999999999999999999999999999999999999988 6677777654
|
|
| >KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-42 Score=279.26 Aligned_cols=299 Identities=28% Similarity=0.483 Sum_probs=260.9
Q ss_pred hhccccCCCCccEEEEcCCHHHHHHHHHHHHHhcccc------ceeEEEeecCccCCccccccCCCCCEEEeChHHHHHH
Q 047490 8 MLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHA------RFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQH 81 (323)
Q Consensus 8 ~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~ 81 (323)
+.--.++..+|..||+||+++|+.|+.+.+.+|.... .++...+-||.....+......+.+|+|+||++|.++
T Consensus 237 ~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~Dm 316 (610)
T KOG0341|consen 237 MMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDM 316 (610)
T ss_pred hcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHH
Confidence 3334567789999999999999999999999886554 3788889999998888888899999999999999999
Q ss_pred HHcCCCCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecc
Q 047490 82 IEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTS 161 (323)
Q Consensus 82 ~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~ 161 (323)
+......++-++|+.+|||++|++.+|.+.++.++..++... |.+++|||+|...+.+....+-.++.+...
T Consensus 317 L~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QR--------QTLLFSATMP~KIQ~FAkSALVKPvtvNVG 388 (610)
T KOG0341|consen 317 LAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQR--------QTLLFSATMPKKIQNFAKSALVKPVTVNVG 388 (610)
T ss_pred HHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhh--------heeeeeccccHHHHHHHHhhcccceEEecc
Confidence 999888899999999999999999999999999999998765 999999999999998888888777766555
Q ss_pred ccccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHH
Q 047490 162 TLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENL 241 (323)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~ 241 (323)
..-..-.++.+..-++ ..+.|+.-|++.|.. ...|++|||.....+..+.+.|--.|..+..+||+-++++|...+
T Consensus 389 RAGAAsldViQevEyV-kqEaKiVylLeCLQK---T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai 464 (610)
T KOG0341|consen 389 RAGAASLDVIQEVEYV-KQEAKIVYLLECLQK---TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAI 464 (610)
T ss_pred cccccchhHHHHHHHH-HhhhhhhhHHHHhcc---CCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHH
Confidence 4444444444433332 356788888888875 467999999999999999999988899999999999999999999
Q ss_pred HhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCC-cHHHHHHHHHHHH
Q 047490 242 NKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKK-DVLLADRIEEAIR 319 (323)
Q Consensus 242 ~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~-~~~~~~~i~~~l~ 319 (323)
+.|+. |+.+|||+|++++.|+|+ ++.|||+||+|.....|.+|+||.||.|+.|.+.+|+++. +...+-.++..|.
T Consensus 465 ~afr~--gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL~ 542 (610)
T KOG0341|consen 465 EAFRA--GKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLLQ 542 (610)
T ss_pred HHHhc--CCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHHH
Confidence 99999 999999999999999999 9999999999999999999999999999999999999974 6677777776664
Q ss_pred h
Q 047490 320 K 320 (323)
Q Consensus 320 ~ 320 (323)
.
T Consensus 543 E 543 (610)
T KOG0341|consen 543 E 543 (610)
T ss_pred H
Confidence 3
|
|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=307.41 Aligned_cols=295 Identities=18% Similarity=0.246 Sum_probs=220.7
Q ss_pred cCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHc----CCCC
Q 047490 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIED----GNMV 88 (323)
Q Consensus 13 ~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~----~~~~ 88 (323)
.+++++++|||+||++|+.|+.+.++++. ..++++..+.|+... .+...+..+++|+|+||+.+...+.. +...
T Consensus 77 ~~~~~~~aL~l~PtraLa~q~~~~l~~l~-~~~i~v~~~~Gdt~~-~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~ 154 (742)
T TIGR03817 77 ADDPRATALYLAPTKALAADQLRAVRELT-LRGVRPATYDGDTPT-EERRWAREHARYVLTNPDMLHRGILPSHARWARF 154 (742)
T ss_pred hhCCCcEEEEEcChHHHHHHHHHHHHHhc-cCCeEEEEEeCCCCH-HHHHHHhcCCCEEEEChHHHHHhhccchhHHHHH
Confidence 34567899999999999999999999997 346788777777653 33345556689999999998643322 2234
Q ss_pred CCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccc
Q 047490 89 YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIA 168 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (323)
++++++||+||+|.+.+ .|+..+..++..+...+... +.++|++++|||+++... ........+..... . .....
T Consensus 155 l~~l~~vViDEah~~~g-~fg~~~~~il~rL~ri~~~~-g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~i~-~-~~~~~ 229 (742)
T TIGR03817 155 LRRLRYVVIDECHSYRG-VFGSHVALVLRRLRRLCARY-GASPVFVLASATTADPAA-AASRLIGAPVVAVT-E-DGSPR 229 (742)
T ss_pred HhcCCEEEEeChhhccC-ccHHHHHHHHHHHHHHHHhc-CCCCEEEEEecCCCCHHH-HHHHHcCCCeEEEC-C-CCCCc
Confidence 78999999999999976 48888888877776543322 235699999999988754 44444444432211 1 11111
Q ss_pred cceeeEEeccC----------------ChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC--------CCe
Q 047490 169 SARHDFIKLSG----------------SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN--------QIS 224 (323)
Q Consensus 169 ~~~~~~~~~~~----------------~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~--------~~~ 224 (323)
.........+. ...+...+.+++. .+.++||||++++.++.++..+++. +..
T Consensus 230 ~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~----~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~ 305 (742)
T TIGR03817 230 GARTVALWEPPLTELTGENGAPVRRSASAEAADLLADLVA----EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAER 305 (742)
T ss_pred CceEEEEecCCccccccccccccccchHHHHHHHHHHHHH----CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccc
Confidence 11222211111 1123444444443 4679999999999999999988753 567
Q ss_pred eEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEe
Q 047490 225 TVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLV 303 (323)
Q Consensus 225 ~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~ 303 (323)
+..+||++++++|++++++|++ |++++||||+++++|||+ ++++||+++.|.+...|.||+||+||.|+.|.++++.
T Consensus 306 v~~~hgg~~~~eR~~ie~~f~~--G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~ 383 (742)
T TIGR03817 306 VAAYRAGYLPEDRRELERALRD--GELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVA 383 (742)
T ss_pred hhheecCCCHHHHHHHHHHHHc--CCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEe
Confidence 8899999999999999999999 999999999999999999 9999999999999999999999999999999999988
Q ss_pred e--CCcHHHHHHHHHHHHh
Q 047490 304 A--KKDVLLADRIEEAIRK 320 (323)
Q Consensus 304 ~--~~~~~~~~~i~~~l~~ 320 (323)
. +.|...+..+++.++.
T Consensus 384 ~~~~~d~~~~~~~~~~~~~ 402 (742)
T TIGR03817 384 RDDPLDTYLVHHPEALFDR 402 (742)
T ss_pred CCChHHHHHHhCHHHHhcC
Confidence 6 4566677777766654
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >KOG0346 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-40 Score=271.54 Aligned_cols=296 Identities=29% Similarity=0.443 Sum_probs=253.6
Q ss_pred cCCCCccEEEEcCCHHHHHHHHHHHHHhccccc--eeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCC-CCC
Q 047490 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHAR--FRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGN-MVY 89 (323)
Q Consensus 13 ~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~-~~~ 89 (323)
....++.++||+||++|+.|+++.+.++....+ +++.-++++.+......++.+.++|+|+||.++..++..+. ...
T Consensus 89 ~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~ 168 (569)
T KOG0346|consen 89 DGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYL 168 (569)
T ss_pred cccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhh
Confidence 345689999999999999999999999876543 56666666655555556777889999999999999998876 567
Q ss_pred CCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccccccc-c
Q 047490 90 GDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKI-A 168 (323)
Q Consensus 90 ~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 168 (323)
..+.++|+||||.+++.|+.+.+..+.+.++..+ |-++||||+.+.+...-..++.++..+.....+... .
T Consensus 169 ~~l~~LVvDEADLllsfGYeedlk~l~~~LPr~~--------Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~d 240 (569)
T KOG0346|consen 169 DSLSFLVVDEADLLLSFGYEEDLKKLRSHLPRIY--------QCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPD 240 (569)
T ss_pred hheeeEEechhhhhhhcccHHHHHHHHHhCCchh--------hheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcc
Confidence 8899999999999999999999999999998766 999999999999999999999999887665544443 3
Q ss_pred cceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccC
Q 047490 169 SARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNED 248 (323)
Q Consensus 169 ~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 248 (323)
...++++.+. ..+|...+..+++-.+ -.++.|||+|+.+.+..+.-+|+..|++.+++.|.||...|..++++|++
T Consensus 241 qL~Qy~v~cs-e~DKflllyallKL~L-I~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNk-- 316 (569)
T KOG0346|consen 241 QLTQYQVKCS-EEDKFLLLYALLKLRL-IRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNK-- 316 (569)
T ss_pred cceEEEEEec-cchhHHHHHHHHHHHH-hcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhC--
Confidence 4556666665 6778777776665433 23699999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEec-----------------------------------ccccccCC-CCCEEEEcCCCCCchhhhhhhccccc
Q 047490 249 GDCPTLVCTD-----------------------------------LAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTAR 292 (323)
Q Consensus 249 g~~~ilv~t~-----------------------------------~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R 292 (323)
|-.+++|||+ -..+|||+ ++.+|++||+|.+...|++|+||.+|
T Consensus 317 G~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaR 396 (569)
T KOG0346|consen 317 GLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTAR 396 (569)
T ss_pred cceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhcccccc
Confidence 9999999998 13579999 99999999999999999999999999
Q ss_pred CCCcceEEEEeeCCcHHHHHHHHHHHHh
Q 047490 293 MGAKGKVTSLVAKKDVLLADRIEEAIRK 320 (323)
Q Consensus 293 ~~~~g~~~~~~~~~~~~~~~~i~~~l~~ 320 (323)
.+++|.+++|+.+.+......+++.+..
T Consensus 397 g~n~GtalSfv~P~e~~g~~~le~~~~d 424 (569)
T KOG0346|consen 397 GNNKGTALSFVSPKEEFGKESLESILKD 424 (569)
T ss_pred CCCCCceEEEecchHHhhhhHHHHHHhh
Confidence 9999999999999998877777776654
|
|
| >KOG0347 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-41 Score=283.46 Aligned_cols=303 Identities=31% Similarity=0.491 Sum_probs=238.3
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCC---CCCC
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNM---VYGD 91 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~---~~~~ 91 (323)
...+.+||++|||+||-|+.+.+....+..++++..++||.....+.+.++..++|+|+||++||.++..... .+++
T Consensus 261 ~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~ 340 (731)
T KOG0347|consen 261 YVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKK 340 (731)
T ss_pred cCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhh
Confidence 3344599999999999999999999999999999999999999889999999999999999999999987654 4778
Q ss_pred CcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCc-------eeeeccccc
Q 047490 92 IKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGI-------AHLRTSTLH 164 (323)
Q Consensus 92 ~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~-------~~~~~~~~~ 164 (323)
++++|+||+|+|++.|.-..+..++..+.....+. ..|.+.+|||++-....-+....... ..+..-...
T Consensus 341 vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~---qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ 417 (731)
T KOG0347|consen 341 VKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNR---QRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKK 417 (731)
T ss_pred ceEEEEccHHHHhhhccHHHHHHHHHHhhhhhccc---ccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHH
Confidence 89999999999999998899999998887433332 45999999998632221111000000 000000000
Q ss_pred cccccceeeEEeccCChhHHHHHHHHhccCC-------------CCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCC
Q 047490 165 KKIASARHDFIKLSGSENKLEALLQVLEPSL-------------SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGE 231 (323)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~-------------~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~ 231 (323)
....+ ..-+++.+....-...|.+-+-++. .-++++|||||+.+.+.+++-.|+..++....+|+.
T Consensus 418 ig~~~-kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~ 496 (731)
T KOG0347|consen 418 IGFRG-KPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHAS 496 (731)
T ss_pred hCccC-CCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhhcCCCCchhhHH
Confidence 00000 0023333333333333333221110 235799999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHH
Q 047490 232 VPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310 (323)
Q Consensus 232 ~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~ 310 (323)
|.+.+|-..+++|++ ..-.|||||+++.+|+|+ .++|||||-.|.+...|.+|.||..|.++.|..+.++.+++...
T Consensus 497 M~QKqRLknLEkF~~--~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~ 574 (731)
T KOG0347|consen 497 MIQKQRLKNLEKFKQ--SPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGP 574 (731)
T ss_pred HHHHHHHHhHHHHhc--CCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHH
Confidence 999999999999999 666699999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC
Q 047490 311 ADRIEEAIRKNES 323 (323)
Q Consensus 311 ~~~i~~~l~~~~~ 323 (323)
+.++.+-|++.++
T Consensus 575 ~~KL~ktL~k~~d 587 (731)
T KOG0347|consen 575 LKKLCKTLKKKED 587 (731)
T ss_pred HHHHHHHHhhccC
Confidence 9999999988764
|
|
| >KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-40 Score=276.32 Aligned_cols=308 Identities=28% Similarity=0.495 Sum_probs=244.9
Q ss_pred hhhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccc-eeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHc-
Q 047490 7 AMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHAR-FRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIED- 84 (323)
Q Consensus 7 ~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~- 84 (323)
+|-..+.+..|+.+||++|||+|+.|+++.++++..... +-.+.+-||+........+..|++|+|+||+++.+.+.+
T Consensus 201 ~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT 280 (708)
T KOG0348|consen 201 AMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNT 280 (708)
T ss_pred hcCccccccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhcc
Confidence 444556677899999999999999999999999987654 455677788888888888889999999999999998887
Q ss_pred CCCCCCCCcEEeecchhhhhcCCChhhHHHHHhhhc----cccCCCCC-CCceEEEEEeecchhhHHHHHHHhcCceeee
Q 047490 85 GNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK----NRASKPNG-QGFQTVLVSATMTKAVQKLVDEECQGIAHLR 159 (323)
Q Consensus 85 ~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~----~~~~~~~~-~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~ 159 (323)
..+.+++++++|+||+|++.+.||...+..|+..+. ..+....- ...|.+++|||+.+.+.+..+..+.++..+.
T Consensus 281 ~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ 360 (708)
T KOG0348|consen 281 KSIKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYIS 360 (708)
T ss_pred chheeeeeeEEEecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeee
Confidence 567789999999999999999999999999998883 23322111 1368899999999998888877777766654
Q ss_pred cccc-------------------------ccccccceeeEEeccCChhHHHHHHHHhccCC--CCCCeEEEEecCcccHH
Q 047490 160 TSTL-------------------------HKKIASARHDFIKLSGSENKLEALLQVLEPSL--SKGNKVMVFCNTLNSSR 212 (323)
Q Consensus 160 ~~~~-------------------------~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~--~~~~~~lvf~~~~~~~~ 212 (323)
.+.. ...+....+.|..+++. -++..|..+|.... +...++|||..+.+.++
T Consensus 361 ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpK-LRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~Ve 439 (708)
T KOG0348|consen 361 LDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPK-LRLVALAALLLNKVKFEEKQKMIVFFSCSDSVE 439 (708)
T ss_pred ccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCc-hhHHHHHHHHHHHhhhhhhceeEEEEechhHHH
Confidence 1110 01112233445544443 34555555554422 24469999999999998
Q ss_pred HHHHHHhh----------------------CCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCC
Q 047490 213 AVDHFLNE----------------------NQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVD 269 (323)
Q Consensus 213 ~l~~~l~~----------------------~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~ 269 (323)
.=+..|.+ .+.++..+||+|++++|..++..|.. .+..||+||+++++|+|+ +++
T Consensus 440 FHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~--~~~~VLLcTDVAaRGLDlP~V~ 517 (708)
T KOG0348|consen 440 FHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSH--SRRAVLLCTDVAARGLDLPHVG 517 (708)
T ss_pred HHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhcc--ccceEEEehhhhhccCCCCCcC
Confidence 77777654 13466779999999999999999998 777799999999999999 999
Q ss_pred EEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHH
Q 047490 270 HVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317 (323)
Q Consensus 270 ~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~ 317 (323)
.||.|++|.+..+|.+|+||..|.|.+|.++.|..+.|..++..++..
T Consensus 518 ~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~ 565 (708)
T KOG0348|consen 518 LVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKH 565 (708)
T ss_pred eEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999887777653
|
|
| >KOG4284 consensus DEAD box protein [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=279.60 Aligned_cols=287 Identities=25% Similarity=0.420 Sum_probs=254.4
Q ss_pred hccccCCCCccEEEEcCCHHHHHHHHHHHHHhcccc-ceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCC
Q 047490 9 LGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHA-RFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNM 87 (323)
Q Consensus 9 ~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~ 87 (323)
-........++.+||+|||+++-|+.+.++..++.+ |.++..+.||+........++. ++|+|+||+++.+++....+
T Consensus 85 ~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~~~ 163 (980)
T KOG4284|consen 85 ESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELGAM 163 (980)
T ss_pred hhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhcCC
Confidence 344456667899999999999999999999998754 7899999999876655555554 78999999999999999999
Q ss_pred CCCCCcEEeecchhhhhc-CCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccc
Q 047490 88 VYGDIKYLVLDEADTMFD-RGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKK 166 (323)
Q Consensus 88 ~~~~~~~vIiDE~h~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (323)
.+++++++|+||||.+.+ ..|...+..|+..+++.. |++++|||++..+...+..++..+..+..-.....
T Consensus 164 n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~~r--------Qv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~ 235 (980)
T KOG4284|consen 164 NMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQIR--------QVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQ 235 (980)
T ss_pred CccceeEEEeccHHhhhchhhHHHHHHHHHHhcchhh--------eeeEEeccCchhHHHHHHHHhcccceeecccCCce
Confidence 999999999999999998 558899999999988755 99999999999999999999999988887777777
Q ss_pred cccceeeEEeccCCh-------hHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHH
Q 047490 167 IASARHDFIKLSGSE-------NKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVE 239 (323)
Q Consensus 167 ~~~~~~~~~~~~~~~-------~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~ 239 (323)
..+++++++...... .|.+.|-+++.+. +-.+.||||+....|+-++..|+..|+++..+.|.|++.+|..
T Consensus 236 L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~i--py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~ 313 (980)
T KOG4284|consen 236 LFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSI--PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLL 313 (980)
T ss_pred eechhheeeeccCCcchHHHHHHHHHHHHHHHhhC--chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHH
Confidence 888888887776543 2666666776665 4468899999999999999999999999999999999999999
Q ss_pred HHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcH
Q 047490 240 NLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308 (323)
Q Consensus 240 ~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~ 308 (323)
+.+.++. -.++|||+|+...+|||- +++.||+.|+|.+..+|.+|+||+||+|.+|.+++++..+..
T Consensus 314 a~~~lr~--f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 314 AVDQLRA--FRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred HHHHhhh--ceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 9999999 899999999999999999 999999999999999999999999999999999999997654
|
|
| >KOG0334 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=293.15 Aligned_cols=299 Identities=29% Similarity=0.451 Sum_probs=269.4
Q ss_pred cCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCC
Q 047490 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDI 92 (323)
Q Consensus 13 ~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~ 92 (323)
....||.+||++||++|+.|+.++++.+....++++.+++|+.....+...+..++.|+|+||+++..++-.+.-.+.++
T Consensus 434 ~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnl 513 (997)
T KOG0334|consen 434 EEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNL 513 (997)
T ss_pred hhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccc
Confidence 44569999999999999999999999999999999999999999999988898889999999999999887766555555
Q ss_pred c---EEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccccccccc
Q 047490 93 K---YLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIAS 169 (323)
Q Consensus 93 ~---~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (323)
+ ++|+||+|+|++.+|.+....|+..++.. .|.+++|||++..+...-...+..+..+...........
T Consensus 514 rR~t~lv~deaDrmfdmgfePq~~~Ii~nlrpd--------rQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~ 585 (997)
T KOG0334|consen 514 RRVTYLVLDEADRMFDMGFEPQITRILQNLRPD--------RQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKE 585 (997)
T ss_pred cccceeeechhhhhheeccCcccchHHhhcchh--------hhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEecc
Confidence 5 99999999999999999988898888544 499999999999988887777777777666655566667
Q ss_pred ceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCC
Q 047490 170 ARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249 (323)
Q Consensus 170 ~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g 249 (323)
+.+.+..+...+.|+..|+++|.+..+ ..++||||.+...|..+.+.|.+.++.+..+||+.+..+|..++++|++ +
T Consensus 586 V~q~v~V~~~e~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~--~ 662 (997)
T KOG0334|consen 586 VTQVVRVCAIENEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKN--G 662 (997)
T ss_pred ceEEEEEecCchHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhc--c
Confidence 777777777788999999999988766 6799999999999999999999999999999999999999999999999 9
Q ss_pred CCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHhcC
Q 047490 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRKNE 322 (323)
Q Consensus 250 ~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~~~ 322 (323)
.+.+||+|+.+.+|+|+ .+..||+|+.|.-+.+|.+|+||+||.|.+|.+++|+++.+......|.+.+...+
T Consensus 663 ~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~ 736 (997)
T KOG0334|consen 663 VVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALELSK 736 (997)
T ss_pred CceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHHhcc
Confidence 99999999999999999 99999999999999999999999999999999999999988889999988886543
|
|
| >KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-39 Score=261.19 Aligned_cols=292 Identities=30% Similarity=0.527 Sum_probs=264.9
Q ss_pred ccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc-CCCCCEEEeChHHHHHHHHcCCCCCC
Q 047490 12 LMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL-NNPIDMVVGTPGRILQHIEDGNMVYG 90 (323)
Q Consensus 12 ~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Iii~Tp~~l~~~~~~~~~~~~ 90 (323)
..+.+..++|+++|+++|+.|..+....++...+.++..+.|+.....+...+ ...++|+++||++....+....+...
T Consensus 89 D~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~ 168 (397)
T KOG0327|consen 89 DMSVKETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTD 168 (397)
T ss_pred CcchHHHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhcccccccc
Confidence 34556788999999999999999999999998899999999988877555444 44579999999999999998888888
Q ss_pred CCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccc
Q 047490 91 DIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASA 170 (323)
Q Consensus 91 ~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (323)
.+++.|+||++.+.+.+|.+.+..++..++.. +|.+++|||.+.++....++++..+..+...........+
T Consensus 169 ~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~~--------vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gi 240 (397)
T KOG0327|consen 169 GIKMFVLDEADEMLSRGFKDQIYDIFQELPSD--------VQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGI 240 (397)
T ss_pred ceeEEeecchHhhhccchHHHHHHHHHHcCcc--------hhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhhe
Confidence 89999999999999999999999999998864 4999999999999999999999998887777777778888
Q ss_pred eeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCC
Q 047490 171 RHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250 (323)
Q Consensus 171 ~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~ 250 (323)
+++|.....+. |+..|.++.. .-.+.++|||++..+..+...|...+..+..+||+|.+.+|..++.+|+. |.
T Consensus 241 kq~~i~v~k~~-k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~--gs 313 (397)
T KOG0327|consen 241 KQFYINVEKEE-KLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRS--GS 313 (397)
T ss_pred eeeeeeccccc-cccHHHHHHH----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhc--CC
Confidence 88888877655 8888888776 34678999999999999999999999999999999999999999999999 99
Q ss_pred CCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHH
Q 047490 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAI 318 (323)
Q Consensus 251 ~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l 318 (323)
.++||+|..+++|+|+ .++.|++|+.|.....|.+|+||+||.|.+|.++.+++..|...++.+++.+
T Consensus 314 srvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y 382 (397)
T KOG0327|consen 314 SRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFY 382 (397)
T ss_pred ceEEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhc
Confidence 9999999999999999 9999999999999999999999999999999999999999999999998765
|
|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=283.25 Aligned_cols=281 Identities=20% Similarity=0.261 Sum_probs=209.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccc----ccCCCCCEEEeChHHHHHHHH-cCCC-CCC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQED----SLNNPIDMVVGTPGRILQHIE-DGNM-VYG 90 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Iii~Tp~~l~~~~~-~~~~-~~~ 90 (323)
+..+||++|+++|+.|+.+.++.. ++.+..+.++........ ...+.++|+++||+++..... ...+ ...
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~ 126 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKAS----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERK 126 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcC
Confidence 457999999999999999988865 556777776654432221 123457999999999753220 0111 467
Q ss_pred CCcEEeecchhhhhcCC--ChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcC--ceeeeccccccc
Q 047490 91 DIKYLVLDEADTMFDRG--FGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQG--IAHLRTSTLHKK 166 (323)
Q Consensus 91 ~~~~vIiDE~h~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 166 (323)
+++++|+||||++.+|+ |.+.+..+... .... .+.+++++|||+++.....+...+.. +....... .
T Consensus 127 ~i~~iViDEaH~i~~~g~~fr~~~~~l~~l-~~~~-----~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~---~ 197 (470)
T TIGR00614 127 GITLIAVDEAHCISQWGHDFRPDYKALGSL-KQKF-----PNVPIMALTATASPSVREDILRQLNLKNPQIFCTSF---D 197 (470)
T ss_pred CcCEEEEeCCcccCccccccHHHHHHHHHH-HHHc-----CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCC---C
Confidence 89999999999999877 56666554321 1111 13489999999998877666554322 22211111 1
Q ss_pred cccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccc
Q 047490 167 IASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN 246 (323)
Q Consensus 167 ~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 246 (323)
.+++. +............+.+.+... ..+.++||||++++.++.+++.|+..++.+..+||+|++.+|..++++|++
T Consensus 198 r~nl~--~~v~~~~~~~~~~l~~~l~~~-~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~ 274 (470)
T TIGR00614 198 RPNLY--YEVRRKTPKILEDLLRFIRKE-FKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQR 274 (470)
T ss_pred CCCcE--EEEEeCCccHHHHHHHHHHHh-cCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHc
Confidence 11221 111122224556677666532 245677999999999999999999999999999999999999999999999
Q ss_pred cCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHH
Q 047490 247 EDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIE 315 (323)
Q Consensus 247 ~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~ 315 (323)
|+++|||||+++++|+|+ ++++||++++|.|...|.||+||+||.|..|.|+++++..|...++.+.
T Consensus 275 --g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~ 342 (470)
T TIGR00614 275 --DEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRRLL 342 (470)
T ss_pred --CCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHH
Confidence 999999999999999999 9999999999999999999999999999999999999998887666654
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-38 Score=290.74 Aligned_cols=283 Identities=17% Similarity=0.211 Sum_probs=210.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc------CCCCCEEEeChHHHHH---HHHc--C
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL------NNPIDMVVGTPGRILQ---HIED--G 85 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~Iii~Tp~~l~~---~~~~--~ 85 (323)
+..+|||+|+++|+.++...+.+. ++....+.++.....+...+ .+.++|+|+||+++.. ++.. .
T Consensus 500 ~GiTLVISPLiSLmqDQV~~L~~~----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~ 575 (1195)
T PLN03137 500 PGITLVISPLVSLIQDQIMNLLQA----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLEN 575 (1195)
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhC----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHh
Confidence 458999999999998666666553 67888888887655443322 1468999999999852 1211 1
Q ss_pred CCCCCCCcEEeecchhhhhcCC--ChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccc
Q 047490 86 NMVYGDIKYLVLDEADTMFDRG--FGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTL 163 (323)
Q Consensus 86 ~~~~~~~~~vIiDE~h~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~ 163 (323)
......+.+|||||||++.+|| |++.+..+-.. .... .+++++++|||++......+...+..........
T Consensus 576 L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~L-r~~f-----p~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~- 648 (1195)
T PLN03137 576 LNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGIL-KQKF-----PNIPVLALTATATASVKEDVVQALGLVNCVVFRQ- 648 (1195)
T ss_pred hhhccccceeccCcchhhhhcccchHHHHHHHHHH-HHhC-----CCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeec-
Confidence 1123458899999999999988 77777764221 1111 1348999999999888876666554322111110
Q ss_pred ccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHh
Q 047490 164 HKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNK 243 (323)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~ 243 (323)
....+++ .|............+.+.+.... .+.+.||||.+++.++.+++.|...++.+..|||+|++.+|..++++
T Consensus 649 Sf~RpNL--~y~Vv~k~kk~le~L~~~I~~~~-~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~ 725 (1195)
T PLN03137 649 SFNRPNL--WYSVVPKTKKCLEDIDKFIKENH-FDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQ 725 (1195)
T ss_pred ccCccce--EEEEeccchhHHHHHHHHHHhcc-cCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHH
Confidence 1111222 22222222223456666665431 34678999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHH
Q 047490 244 FKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIE 315 (323)
Q Consensus 244 f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~ 315 (323)
|.. |+++|||||.++++|||+ ++++||+|++|.|...|.|++||+||.|..|.|++++...|...++.+.
T Consensus 726 F~~--Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI 796 (1195)
T PLN03137 726 WSK--DEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMI 796 (1195)
T ss_pred Hhc--CCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHH
Confidence 999 999999999999999999 9999999999999999999999999999999999999988776665554
|
|
| >KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-38 Score=263.97 Aligned_cols=299 Identities=29% Similarity=0.484 Sum_probs=231.9
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCC-C----CCEEEeChHHHHHHHHc-CCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNN-P----IDMVVGTPGRILQHIED-GNMVY 89 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~Iii~Tp~~l~~~~~~-~~~~~ 89 (323)
+.-+++|++||++|+.|+++.|..|....|+.+..+.|..........+.+ . .+|+|+||++|.+.+.. ..+.+
T Consensus 214 ~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~L 293 (620)
T KOG0350|consen 214 KRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDL 293 (620)
T ss_pred cceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcch
Confidence 458999999999999999999999999999999999998887766655533 2 38999999999998884 67889
Q ss_pred CCCcEEeecchhhhhcCCChhhHHHHHhhhcccc-----C-------------------CCC--CCCceEEEEEeecchh
Q 047490 90 GDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRA-----S-------------------KPN--GQGFQTVLVSATMTKA 143 (323)
Q Consensus 90 ~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~-----~-------------------~~~--~~~~~~i~~sat~~~~ 143 (323)
++++|+|+||||++.+..|..+...++..+...- . ..+ ..+...+++|||+...
T Consensus 294 k~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqd 373 (620)
T KOG0350|consen 294 KHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQD 373 (620)
T ss_pred hhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcC
Confidence 9999999999999998777776666655443320 0 000 1234477888888766
Q ss_pred hHHHHHHHhcCceeeecc----ccccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHh
Q 047490 144 VQKLVDEECQGIAHLRTS----TLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLN 219 (323)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~ 219 (323)
..+..+..+..+.-.... ..........+...... ..-|...+...+... +..++|+|+++...+.+++..|+
T Consensus 374 P~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~-~~~kpl~~~~lI~~~--k~~r~lcf~~S~~sa~Rl~~~L~ 450 (620)
T KOG0350|consen 374 PSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTE-PKFKPLAVYALITSN--KLNRTLCFVNSVSSANRLAHVLK 450 (620)
T ss_pred hHHHhhhhcCCCceEEeecccceeeecChhhhhceeecc-cccchHhHHHHHHHh--hcceEEEEecchHHHHHHHHHHH
Confidence 666555555555222111 22223333334333332 233555666666553 67899999999999999999887
Q ss_pred ----hCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCC
Q 047490 220 ----ENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMG 294 (323)
Q Consensus 220 ----~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~ 294 (323)
..+..+..+.|.++...|.+.++.|.. |++++|||++++.+|+|+ ++++||+||+|.+...|.+|+||.+|.|
T Consensus 451 v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~--g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAg 528 (620)
T KOG0350|consen 451 VEFCSDNFKVSEFTGQLNGKRRYKMLEKFAK--GDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAG 528 (620)
T ss_pred HHhccccchhhhhhhhhhHHHHHHHHHHHhc--CCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhccccccc
Confidence 236677779999999999999999999 999999999999999999 9999999999999999999999999999
Q ss_pred CcceEEEEeeCCcHHHHHHHHHHHH
Q 047490 295 AKGKVTSLVAKKDVLLADRIEEAIR 319 (323)
Q Consensus 295 ~~g~~~~~~~~~~~~~~~~i~~~l~ 319 (323)
+.|.++.+....+...+..+-+...
T Consensus 529 q~G~a~tll~~~~~r~F~klL~~~~ 553 (620)
T KOG0350|consen 529 QDGYAITLLDKHEKRLFSKLLKKTN 553 (620)
T ss_pred CCceEEEeeccccchHHHHHHHHhc
Confidence 9999999999988876666655443
|
|
| >KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=260.05 Aligned_cols=305 Identities=28% Similarity=0.425 Sum_probs=269.3
Q ss_pred cchhhhhhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHH
Q 047490 2 LRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQH 81 (323)
Q Consensus 2 l~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~ 81 (323)
+.+.+++..+. ..+.++++++||++|+.|+.+..+.++...++++.+++|+....++...++.++|||++||+++.++
T Consensus 77 ipm~e~Lk~~s--~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~ 154 (529)
T KOG0337|consen 77 IPMIEKLKSHS--QTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHL 154 (529)
T ss_pred HHHHHHHhhcc--ccccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeee
Confidence 34455555554 5589999999999999999999999999999999999999999999999998899999999999988
Q ss_pred HHcCCCCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecc
Q 047490 82 IEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTS 161 (323)
Q Consensus 82 ~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~ 161 (323)
.-.-.+.++.+.||||||++++...||.+....++..++... |.++||||+|..+..+....+..+..++.+
T Consensus 155 ~vem~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~~~~--------QTllfSatlp~~lv~fakaGl~~p~lVRld 226 (529)
T KOG0337|consen 155 GVEMTLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLPESR--------QTLLFSATLPRDLVDFAKAGLVPPVLVRLD 226 (529)
T ss_pred ehheeccccceeeeeehhhhHHHhhhhHHHHHHHHHhCCCcc--------eEEEEeccCchhhHHHHHccCCCCceEEee
Confidence 777678899999999999999999999999999999998654 999999999999999888888888887765
Q ss_pred ccccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHH
Q 047490 162 TLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENL 241 (323)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~ 241 (323)
.....-+.....|..+ ...+|...|+.++..... ..++++||.+..+++-+.+.|+..++.+..++|.|++..|....
T Consensus 227 vetkise~lk~~f~~~-~~a~K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~ 304 (529)
T KOG0337|consen 227 VETKISELLKVRFFRV-RKAEKEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKING 304 (529)
T ss_pred hhhhcchhhhhheeee-ccHHHHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhcc
Confidence 5444443444444443 467899999999887543 46899999999999999999999999999999999999999999
Q ss_pred HhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHh
Q 047490 242 NKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRK 320 (323)
Q Consensus 242 ~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~ 320 (323)
.+|+. ++..++|.|+.+.+|+|+ -.+.||+|+.|.+...|.+|+||+.|.|..|..|.++...|...+-.+...+++
T Consensus 305 ~~F~~--~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr 382 (529)
T KOG0337|consen 305 RDFRG--RKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGR 382 (529)
T ss_pred ccccC--CccceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCC
Confidence 99999 999999999999999999 899999999999999999999999999999999999999999888888776654
|
|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-37 Score=282.56 Aligned_cols=279 Identities=18% Similarity=0.249 Sum_probs=208.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccc----ccCCCCCEEEeChHHHHHHHHcCCCCCCCC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQED----SLNNPIDMVVGTPGRILQHIEDGNMVYGDI 92 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~ 92 (323)
+..+||++|+++|+.|+.+.++.. ++....+.++........ ...+..+++++||+++........+...++
T Consensus 65 ~g~tlVisPl~sL~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l 140 (607)
T PRK11057 65 DGLTLVVSPLISLMKDQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNP 140 (607)
T ss_pred CCCEEEEecHHHHHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCC
Confidence 357999999999999999999875 456666666544333222 123457899999999863221122334578
Q ss_pred cEEeecchhhhhcCC--ChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhc--Cceeeeccccccccc
Q 047490 93 KYLVLDEADTMFDRG--FGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQ--GIAHLRTSTLHKKIA 168 (323)
Q Consensus 93 ~~vIiDE~h~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 168 (323)
+++|+||||++.+|+ |.+.+..+.. +.... .+.+++++|||+++.....+...+. .+....... ..+
T Consensus 141 ~~iVIDEaH~i~~~G~~fr~~y~~L~~-l~~~~-----p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~---~r~ 211 (607)
T PRK11057 141 ALLAVDEAHCISQWGHDFRPEYAALGQ-LRQRF-----PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSF---DRP 211 (607)
T ss_pred CEEEEeCccccccccCcccHHHHHHHH-HHHhC-----CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCC---CCC
Confidence 999999999999877 6666655422 22211 1348999999999877665544432 222211111 111
Q ss_pred cceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccC
Q 047490 169 SARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNED 248 (323)
Q Consensus 169 ~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 248 (323)
++. +. +.....+...+...+... .+.++||||+++++++.+++.|+..++.+..+||+|++.+|..++++|++
T Consensus 212 nl~--~~-v~~~~~~~~~l~~~l~~~--~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~-- 284 (607)
T PRK11057 212 NIR--YT-LVEKFKPLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQR-- 284 (607)
T ss_pred cce--ee-eeeccchHHHHHHHHHhc--CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHC--
Confidence 221 11 122233556666666543 56799999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHH
Q 047490 249 GDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIE 315 (323)
Q Consensus 249 g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~ 315 (323)
|+.+|||||+++++|+|+ ++++||+|++|.|...|.|++||+||.|.+|.|+++++..|...++++.
T Consensus 285 g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~ 352 (607)
T PRK11057 285 DDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (607)
T ss_pred CCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 999999999999999999 9999999999999999999999999999999999999998876665543
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-37 Score=282.26 Aligned_cols=279 Identities=20% Similarity=0.280 Sum_probs=214.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccc----ccCCCCCEEEeChHHHHHHHHcCCCCCCCC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQED----SLNNPIDMVVGTPGRILQHIEDGNMVYGDI 92 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~ 92 (323)
+..++|++|+++|+.|+.+.++.+ ++.+..+.++........ ...+..+|+++||+++........+...++
T Consensus 53 ~g~~lVisPl~sL~~dq~~~l~~~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l 128 (591)
T TIGR01389 53 KGLTVVISPLISLMKDQVDQLRAA----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPI 128 (591)
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCC
Confidence 457899999999999999999885 567777777765443322 234568999999999864332223445689
Q ss_pred cEEeecchhhhhcCC--ChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCc--eeeeccccccccc
Q 047490 93 KYLVLDEADTMFDRG--FGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGI--AHLRTSTLHKKIA 168 (323)
Q Consensus 93 ~~vIiDE~h~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 168 (323)
+++|+||||++.+|+ |.+.+..+....... .+.+++++|||+++.....+...+... ..+... ...+
T Consensus 129 ~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~------~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~---~~r~ 199 (591)
T TIGR01389 129 ALVAVDEAHCVSQWGHDFRPEYQRLGSLAERF------PQVPRIALTATADAETRQDIRELLRLADANEFITS---FDRP 199 (591)
T ss_pred CEEEEeCCcccccccCccHHHHHHHHHHHHhC------CCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecC---CCCC
Confidence 999999999999876 677776665433221 123699999999988877666655322 111111 1111
Q ss_pred cceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccC
Q 047490 169 SARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNED 248 (323)
Q Consensus 169 ~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 248 (323)
++ ++.+.....+...+.+.+... .+.++||||++++.++.+++.|...++.+..+||+|+.++|..+++.|.+
T Consensus 200 nl---~~~v~~~~~~~~~l~~~l~~~--~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~-- 272 (591)
T TIGR01389 200 NL---RFSVVKKNNKQKFLLDYLKKH--RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLY-- 272 (591)
T ss_pred Cc---EEEEEeCCCHHHHHHHHHHhc--CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHc--
Confidence 22 222222345667777777654 36789999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHH
Q 047490 249 GDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIE 315 (323)
Q Consensus 249 g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~ 315 (323)
|+.+|||||+++++|+|+ ++++||++++|.|...|.|++||+||.|..|.|+++++..|...++.+.
T Consensus 273 g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~i 340 (591)
T TIGR01389 273 DDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIALLKRRI 340 (591)
T ss_pred CCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHHHHHHHH
Confidence 999999999999999999 9999999999999999999999999999999999999988765555443
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=292.22 Aligned_cols=276 Identities=20% Similarity=0.255 Sum_probs=200.7
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhc------------cccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHH
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSIS------------HHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIE 83 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~ 83 (323)
++.++|||+|+++|++|+.+.++... ...++++...+|+.....+.+.+.++++|+|+||++|..++.
T Consensus 36 ~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLt 115 (1490)
T PRK09751 36 KTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTRNPPDILITTPESLYLMLT 115 (1490)
T ss_pred CCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHh
Confidence 46899999999999999999987521 123688999999988877777777788999999999998876
Q ss_pred cC-CCCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcC--ceeeec
Q 047490 84 DG-NMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQG--IAHLRT 160 (323)
Q Consensus 84 ~~-~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~--~~~~~~ 160 (323)
+. ...++++++||+||+|.+.+..++.++...+..+..... .+.|+|++|||+.+. .+ +.+++.. +..+..
T Consensus 116 sk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~----~~~QrIgLSATI~n~-ee-vA~~L~g~~pv~Iv~ 189 (1490)
T PRK09751 116 SRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLH----TSAQRIGLSATVRSA-SD-VAAFLGGDRPVTVVN 189 (1490)
T ss_pred hhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCC----CCCeEEEEEeeCCCH-HH-HHHHhcCCCCEEEEC
Confidence 53 346899999999999999987778887777777765432 356999999999873 22 3334332 222221
Q ss_pred cccccccccceeeEEeccCC------------------h-hHHHHH-HHHhccCCCCCCeEEEEecCcccHHHHHHHHhh
Q 047490 161 STLHKKIASARHDFIKLSGS------------------E-NKLEAL-LQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE 220 (323)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~------------------~-~k~~~l-~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~ 220 (323)
... .....+. .+....+. . .....+ ..++.. ...++++|||||++..|+.++..|++
T Consensus 190 ~~~-~r~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~~-i~~~~stLVFvNSR~~AE~La~~L~~ 266 (1490)
T PRK09751 190 PPA-MRHPQIR-IVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDE-VLRHRSTIVFTNSRGLAEKLTARLNE 266 (1490)
T ss_pred CCC-CcccceE-EEEecCchhhccccccccccccchhhhhhhhHHHHHHHHHH-HhcCCCEEEECCCHHHHHHHHHHHHH
Confidence 111 1111111 11111100 0 000111 112221 12457999999999999999998875
Q ss_pred CC---------------------------------CeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-
Q 047490 221 NQ---------------------------------ISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL- 266 (323)
Q Consensus 221 ~~---------------------------------~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~- 266 (323)
.. ..+..|||+|++++|..+++.|++ |++++||||++++.|||+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~--G~LrvLVATssLELGIDIg 344 (1490)
T PRK09751 267 LYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKS--GELRCVVATSSLELGIDMG 344 (1490)
T ss_pred hhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHh--CCceEEEeCcHHHccCCcc
Confidence 31 125679999999999999999999 999999999999999999
Q ss_pred CCCEEEEcCCCCCchhhhhhhcccccCC-CcceEEEE
Q 047490 267 DVDHVIMFDFPLNSIDYLHRTGRTARMG-AKGKVTSL 302 (323)
Q Consensus 267 ~~~~vi~~~~p~s~~~~~Q~~GR~~R~~-~~g~~~~~ 302 (323)
++++||+++.|.+...|.||+||+||.. ..+.++++
T Consensus 345 ~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~ 381 (1490)
T PRK09751 345 AVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFF 381 (1490)
T ss_pred cCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEE
Confidence 8999999999999999999999999973 33445533
|
|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-37 Score=289.95 Aligned_cols=282 Identities=19% Similarity=0.273 Sum_probs=202.6
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHh-------c----ccc-ceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHH
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSI-------S----HHA-RFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHI 82 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~-------~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~ 82 (323)
.++.++||++|+++|++|+.+.+.+. . ... ++++...+|+.......+.+.++++|+|+||+++..++
T Consensus 82 ~~~~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll 161 (876)
T PRK13767 82 EDKVYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILL 161 (876)
T ss_pred CCCeEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHh
Confidence 34678999999999999998866532 2 222 66888899998776666667777899999999998777
Q ss_pred HcCCC--CCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecch--hhHHHHHHHhc----C
Q 047490 83 EDGNM--VYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTK--AVQKLVDEECQ----G 154 (323)
Q Consensus 83 ~~~~~--~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~--~~~~~~~~~~~----~ 154 (323)
..... .++++++||+||+|.+.+..++..+...+..+.... +.+.|++++|||+++ ....++..... .
T Consensus 162 ~~~~~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~----~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r 237 (876)
T PRK13767 162 NSPKFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELA----GGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPR 237 (876)
T ss_pred cChhHHHHHhcCCEEEEechhhhccCccHHHHHHHHHHHHHhc----CCCCeEEEEecccCCHHHHHHHhcCccccCCCC
Confidence 55432 478999999999999998778888777777666543 124599999999975 23333322110 0
Q ss_pred ceeeeccccccccccceeeEEec------cCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC------C
Q 047490 155 IAHLRTSTLHKKIASARHDFIKL------SGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN------Q 222 (323)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~------~ 222 (323)
...+..... ........... .........+.+.+......++++||||+++..|+.++..|++. +
T Consensus 238 ~~~iv~~~~---~k~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~ 314 (876)
T PRK13767 238 DCEIVDARF---VKPFDIKVISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDE 314 (876)
T ss_pred ceEEEccCC---CccceEEEeccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccc
Confidence 111110000 00000000000 01111223334444433345679999999999999999999863 4
Q ss_pred CeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCC-CcceEE
Q 047490 223 ISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMG-AKGKVT 300 (323)
Q Consensus 223 ~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~-~~g~~~ 300 (323)
..+..+||++++++|..+++.|++ |++++||||++++.|+|+ ++++||+++.|.+...|.||+||+||.+ ..+.+.
T Consensus 315 ~~i~~hHg~ls~~~R~~ve~~fk~--G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ 392 (876)
T PRK13767 315 DNIGAHHSSLSREVRLEVEEKLKR--GELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGR 392 (876)
T ss_pred cceeeeeCCCCHHHHHHHHHHHHc--CCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEE
Confidence 678999999999999999999999 999999999999999999 9999999999999999999999999874 444444
Q ss_pred EEeeC
Q 047490 301 SLVAK 305 (323)
Q Consensus 301 ~~~~~ 305 (323)
++...
T Consensus 393 ii~~~ 397 (876)
T PRK13767 393 IIVVD 397 (876)
T ss_pred EEEcC
Confidence 44443
|
|
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-36 Score=256.75 Aligned_cols=297 Identities=26% Similarity=0.421 Sum_probs=254.7
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhc--cccceeEEEeecCccCCccc-cccCCCCCEEEeChHHHHHHHHcCC--CCC
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSIS--HHARFRSTMVSGGGRLRPQE-DSLNNPIDMVVGTPGRILQHIEDGN--MVY 89 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Iii~Tp~~l~~~~~~~~--~~~ 89 (323)
.-+-+++|+.|+++|+.|++++++++. ...+.++..+.......... ......++|+++||.++...+.... ..+
T Consensus 207 ~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl 286 (593)
T KOG0344|consen 207 KVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDL 286 (593)
T ss_pred ccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchh
Confidence 456899999999999999999999998 55556665555543322211 1123347999999999998888765 678
Q ss_pred CCCcEEeecchhhhhcC-CChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccc
Q 047490 90 GDIKYLVLDEADTMFDR-GFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIA 168 (323)
Q Consensus 90 ~~~~~vIiDE~h~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (323)
+.+.++|+||+|.+.+. .|...+..|...+.. .++++-++|||.+...+++..........+..+..+....
T Consensus 287 ~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s-------~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~ 359 (593)
T KOG0344|consen 287 SKVEWLVVDEADLLFEPEFFVEQLADIYSACQS-------PDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANE 359 (593)
T ss_pred heeeeEeechHHhhhChhhHHHHHHHHHHHhcC-------cchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhh
Confidence 99999999999999987 677777777777654 3568899999999999999998888877776666666666
Q ss_pred cceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHH-hhCCCeeEEecCCCCHHHHHHHHHhcccc
Q 047490 169 SARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFL-NENQISTVNYHGEVPAQERVENLNKFKNE 247 (323)
Q Consensus 169 ~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l-~~~~~~~~~~~~~~~~~~r~~~~~~f~~~ 247 (323)
.+.+....+.....|+-++.+++.... ..|++||+++.+.|..+...| .-.++.+..+||+.+..+|+++++.|+.
T Consensus 360 ~V~QelvF~gse~~K~lA~rq~v~~g~--~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~- 436 (593)
T KOG0344|consen 360 TVDQELVFCGSEKGKLLALRQLVASGF--KPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRI- 436 (593)
T ss_pred hhhhhheeeecchhHHHHHHHHHhccC--CCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhc-
Confidence 777888888888899999999998763 459999999999999999999 5668999999999999999999999999
Q ss_pred CCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHhcC
Q 047490 248 DGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRKNE 322 (323)
Q Consensus 248 ~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~~~ 322 (323)
|++-+||||+.+++|+|+ +++.||+||.|.+...|++|+||+||.|+.|.+++|+++.|...++-+.+..+.++
T Consensus 437 -g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~sG 511 (593)
T KOG0344|consen 437 -GKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQSG 511 (593)
T ss_pred -cCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHHcC
Confidence 999999999999999999 99999999999999999999999999999999999999999999999999887653
|
|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=259.92 Aligned_cols=282 Identities=20% Similarity=0.261 Sum_probs=220.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCCCCCCc
Q 047490 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMVYGDIK 93 (323)
Q Consensus 18 ~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~ 93 (323)
..+||++|..+|..++.+.+++. |+.+..+.+..+.++....+ .+..++++-+||++..-.....+....+.
T Consensus 58 G~TLVVSPLiSLM~DQV~~l~~~----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~ 133 (590)
T COG0514 58 GLTLVVSPLISLMKDQVDQLEAA----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPIS 133 (590)
T ss_pred CCEEEECchHHHHHHHHHHHHHc----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCc
Confidence 38999999999999999999887 56777777775554443322 34579999999999544332233356788
Q ss_pred EEeecchhhhhcCC--ChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCce--eeecccccccccc
Q 047490 94 YLVLDEADTMFDRG--FGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIA--HLRTSTLHKKIAS 169 (323)
Q Consensus 94 ~vIiDE~h~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 169 (323)
+++|||||++.+|| |++.+..+........ +++++++|||.++.+...+...+.... .+... ...++
T Consensus 134 l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~------~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~s---fdRpN 204 (590)
T COG0514 134 LVAIDEAHCISQWGHDFRPDYRRLGRLRAGLP------NPPVLALTATATPRVRDDIREQLGLQDANIFRGS---FDRPN 204 (590)
T ss_pred eEEechHHHHhhcCCccCHhHHHHHHHHhhCC------CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEec---CCCch
Confidence 99999999999998 9999998876655432 558999999999999888877765433 22222 22233
Q ss_pred ceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCC
Q 047490 170 ARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249 (323)
Q Consensus 170 ~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g 249 (323)
+............+...+.+ . ....++..||||.|++.++.++++|...|..+..||++|+.++|+.+.++|.. +
T Consensus 205 i~~~v~~~~~~~~q~~fi~~-~--~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~--~ 279 (590)
T COG0514 205 LALKVVEKGEPSDQLAFLAT-V--LPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLN--D 279 (590)
T ss_pred hhhhhhhcccHHHHHHHHHh-h--ccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhc--C
Confidence 33332222222334443333 1 11245678999999999999999999999999999999999999999999999 9
Q ss_pred CCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHH
Q 047490 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317 (323)
Q Consensus 250 ~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~ 317 (323)
+.+|+|||.++++|||- ++..||||++|.|...|.|-+||+||.|.+..|++++.+.|....+.+.+.
T Consensus 280 ~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~ 348 (590)
T COG0514 280 EIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQ 348 (590)
T ss_pred CCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccHHHHHHHHHh
Confidence 99999999999999999 999999999999999999999999999999999999999997655555443
|
|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=249.90 Aligned_cols=287 Identities=21% Similarity=0.304 Sum_probs=215.4
Q ss_pred hccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCC
Q 047490 9 LGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMV 88 (323)
Q Consensus 9 ~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~ 88 (323)
+..+...++ ++|+|+||+.|+.|.++.+++.+......+..++|....+.+...|.. ..|+|+||+.+.+.+..+.+.
T Consensus 51 ~~~l~~~~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w~~-~kVfvaTPQvveNDl~~Grid 128 (542)
T COG1111 51 ANRLRWFGG-KVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELWAK-KKVFVATPQVVENDLKAGRID 128 (542)
T ss_pred HHHHHhcCC-eEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHHhh-CCEEEeccHHHHhHHhcCccC
Confidence 344556666 999999999999999999999998777789999999998887777766 489999999999999999999
Q ss_pred CCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHH-------------------
Q 047490 89 YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVD------------------- 149 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~------------------- 149 (323)
+.++.++||||||+-.+.- .+-.+........ .++.++++||||.....+...
T Consensus 129 ~~dv~~lifDEAHRAvGny---AYv~Va~~y~~~~-----k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~D 200 (542)
T COG1111 129 LDDVSLLIFDEAHRAVGNY---AYVFVAKEYLRSA-----KNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPD 200 (542)
T ss_pred hHHceEEEechhhhccCcc---hHHHHHHHHHHhc-----cCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCcc
Confidence 9999999999999976532 2333333222221 244899999999753333211
Q ss_pred -----------------------------HH-------hcCceeeeccc-------cccc------ccccee--------
Q 047490 150 -----------------------------EE-------CQGIAHLRTST-------LHKK------IASARH-------- 172 (323)
Q Consensus 150 -----------------------------~~-------~~~~~~~~~~~-------~~~~------~~~~~~-------- 172 (323)
.. +...-.+.... .... ..+...
T Consensus 201 V~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~ 280 (542)
T COG1111 201 VRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSV 280 (542)
T ss_pred HHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHH
Confidence 00 00000000000 0000 000000
Q ss_pred ----------------------------------------------------------eEEeccCChhHHHHHHHHhccC
Q 047490 173 ----------------------------------------------------------DFIKLSGSENKLEALLQVLEPS 194 (323)
Q Consensus 173 ----------------------------------------------------------~~~~~~~~~~k~~~l~~~l~~~ 194 (323)
.........+|++.+.+++.+.
T Consensus 281 ~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~ 360 (542)
T COG1111 281 LAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQ 360 (542)
T ss_pred HHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHH
Confidence 0011111345888888888776
Q ss_pred C--CCCCeEEEEecCcccHHHHHHHHhhCCCeeE-E--------ecCCCCHHHHHHHHHhccccCCCCCEEEEecccccc
Q 047490 195 L--SKGNKVMVFCNTLNSSRAVDHFLNENQISTV-N--------YHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARG 263 (323)
Q Consensus 195 ~--~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~-~--------~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~G 263 (323)
+ ..+.++|||++.+++|+.+...|.+.+..+. . ...||++.++.++++.|++ |+.++||||++.++|
T Consensus 361 ~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~--Ge~nVLVaTSVgEEG 438 (542)
T COG1111 361 LEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRK--GEYNVLVATSVGEEG 438 (542)
T ss_pred HhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhc--CCceEEEEccccccc
Confidence 6 4567999999999999999999998877664 2 2357999999999999999 999999999999999
Q ss_pred cCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcH
Q 047490 264 LDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308 (323)
Q Consensus 264 id~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~ 308 (323)
+|+ .+|.||+|++-.|...++||.||+||. +.|.++++++..+.
T Consensus 439 LDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gtr 483 (542)
T COG1111 439 LDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGTR 483 (542)
T ss_pred CCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCch
Confidence 999 999999999999999999999999999 89999999998743
|
|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=278.69 Aligned_cols=275 Identities=20% Similarity=0.311 Sum_probs=199.0
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEE
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYL 95 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~v 95 (323)
++.+++|++|+++|+.|+.+.++++.. .++++..++|+...... ....++|+|+||+++..++.+....+++++++
T Consensus 66 ~~~kal~i~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lv 141 (737)
T PRK02362 66 RGGKALYIVPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCV 141 (737)
T ss_pred cCCcEEEEeChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEE
Confidence 467999999999999999999998753 47889889888654332 22347999999999999888766668899999
Q ss_pred eecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecch--hhHHHHHHHhcC----ceeeecccc---ccc
Q 047490 96 VLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTK--AVQKLVDEECQG----IAHLRTSTL---HKK 166 (323)
Q Consensus 96 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~--~~~~~~~~~~~~----~~~~~~~~~---~~~ 166 (323)
|+||+|.+.+.++++.++.++..+.... .+.|++++|||+++ .+..++...... +..+..... ...
T Consensus 142 ViDE~H~l~d~~rg~~le~il~rl~~~~-----~~~qii~lSATl~n~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~ 216 (737)
T PRK02362 142 VVDEVHLIDSANRGPTLEVTLAKLRRLN-----PDLQVVALSATIGNADELADWLDAELVDSEWRPIDLREGVFYGGAIH 216 (737)
T ss_pred EEECccccCCCcchHHHHHHHHHHHhcC-----CCCcEEEEcccCCCHHHHHHHhCCCcccCCCCCCCCeeeEecCCeec
Confidence 9999999998889999998888776543 24599999999975 333333211110 000000000 000
Q ss_pred cccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC-------------------------
Q 047490 167 IASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN------------------------- 221 (323)
Q Consensus 167 ~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~------------------------- 221 (323)
... ................+.+.+ ..++++||||++++.|+.+++.|...
T Consensus 217 ~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 291 (737)
T PRK02362 217 FDD-SQREVEVPSKDDTLNLVLDTL----EEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSD 291 (737)
T ss_pred ccc-ccccCCCccchHHHHHHHHHH----HcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccC
Confidence 000 000011111122333333333 35689999999999999988877542
Q ss_pred -----------CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEE----cC-----CCCCc
Q 047490 222 -----------QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIM----FD-----FPLNS 280 (323)
Q Consensus 222 -----------~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~----~~-----~p~s~ 280 (323)
..+++.+||+|++.+|..+++.|++ |.++|||||+++++|+|+ ..++||. |+ .|.+.
T Consensus 292 ~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~--G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~ 369 (737)
T PRK02362 292 TETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRD--RLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPV 369 (737)
T ss_pred ccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHc--CCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCH
Confidence 1368899999999999999999999 999999999999999999 5555554 54 58899
Q ss_pred hhhhhhhcccccCCC--cceEEEEeeCC
Q 047490 281 IDYLHRTGRTARMGA--KGKVTSLVAKK 306 (323)
Q Consensus 281 ~~~~Q~~GR~~R~~~--~g~~~~~~~~~ 306 (323)
.+|.||+||+||.|. .|.+++++...
T Consensus 370 ~~y~Qm~GRAGR~g~d~~G~~ii~~~~~ 397 (737)
T PRK02362 370 LEYHQMAGRAGRPGLDPYGEAVLLAKSY 397 (737)
T ss_pred HHHHHHhhcCCCCCCCCCceEEEEecCc
Confidence 999999999999985 48888888664
|
|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=269.30 Aligned_cols=275 Identities=19% Similarity=0.285 Sum_probs=218.9
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcC--CCCCCCCc
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDG--NMVYGDIK 93 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~--~~~~~~~~ 93 (323)
.+-.+||++|.++|.+++.+.++.++...|+.+...+|++......+...++++|+|+|||+|.-++... ...+.+++
T Consensus 72 ~~i~~lYIsPLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr 151 (814)
T COG1201 72 DGIYALYISPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVR 151 (814)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCc
Confidence 4578999999999999999999999999999999999999988888888999999999999998887653 23588999
Q ss_pred EEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchh--hHHHHHHHhcCceeeeccccccccccce
Q 047490 94 YLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKA--VQKLVDEECQGIAHLRTSTLHKKIASAR 171 (323)
Q Consensus 94 ~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (323)
+||+||+|.+.+...+.++...+..+..... ++|.|++|||..+. ..+++..... .+.+...... ....
T Consensus 152 ~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~-----~~qRIGLSATV~~~~~varfL~g~~~-~~~Iv~~~~~---k~~~ 222 (814)
T COG1201 152 YVIVDEIHALAESKRGVQLALSLERLRELAG-----DFQRIGLSATVGPPEEVAKFLVGFGD-PCEIVDVSAA---KKLE 222 (814)
T ss_pred EEEeehhhhhhccccchhhhhhHHHHHhhCc-----ccEEEeehhccCCHHHHHHHhcCCCC-ceEEEEcccC---Ccce
Confidence 9999999999988888888888888876643 56999999998643 3333222111 1222221111 1111
Q ss_pred eeEEeccCC--------hhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCC-CeeEEecCCCCHHHHHHHHH
Q 047490 172 HDFIKLSGS--------ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQ-ISTVNYHGEVPAQERVENLN 242 (323)
Q Consensus 172 ~~~~~~~~~--------~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~r~~~~~ 242 (323)
......... ......+.+.++ +...+|||+||+..+|.++..|+..+ ..+..|||.++.++|..+.+
T Consensus 223 i~v~~p~~~~~~~~~~~~~~~~~i~~~v~----~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~ 298 (814)
T COG1201 223 IKVISPVEDLIYDEELWAALYERIAELVK----KHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEE 298 (814)
T ss_pred EEEEecCCccccccchhHHHHHHHHHHHh----hcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHH
Confidence 111111111 123344444444 45699999999999999999999876 88999999999999999999
Q ss_pred hccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhccccc-CCCcceEEEEeeC
Q 047490 243 KFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTAR-MGAKGKVTSLVAK 305 (323)
Q Consensus 243 ~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R-~~~~g~~~~~~~~ 305 (323)
+|++ |+++.+|||+.++-|||+ +++.||+++.|.+...+.||+||+|+ .+...+++++...
T Consensus 299 ~lk~--G~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 299 RLKE--GELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred HHhc--CCceEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 9999 999999999999999999 99999999999999999999999985 5566777777766
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=271.79 Aligned_cols=263 Identities=21% Similarity=0.288 Sum_probs=197.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccc---c-CCCCCEEEeChHHHHHHHHcCCCCCCCC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS---L-NNPIDMVVGTPGRILQHIEDGNMVYGDI 92 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~Iii~Tp~~l~~~~~~~~~~~~~~ 92 (323)
+++++||+||++|+.|+++.+++++...++++..++++......... + .+.++|+|+||..+ .....++++
T Consensus 500 g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L 574 (926)
T TIGR00580 500 GKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLL-----QKDVKFKDL 574 (926)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHh-----hCCCCcccC
Confidence 57999999999999999999999988888888888887654433322 2 34589999999532 234568899
Q ss_pred cEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccccccccccee
Q 047490 93 KYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARH 172 (323)
Q Consensus 93 ~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (323)
+++|+||+|++ +......+..+.. ++++++||||+.+...............+...... ...+..
T Consensus 575 ~llVIDEahrf-----gv~~~~~L~~~~~--------~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~--R~~V~t 639 (926)
T TIGR00580 575 GLLIIDEEQRF-----GVKQKEKLKELRT--------SVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED--RLPVRT 639 (926)
T ss_pred CEEEeeccccc-----chhHHHHHHhcCC--------CCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC--ccceEE
Confidence 99999999974 3344444444332 34899999999876655544444444333322211 112222
Q ss_pred eEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC--CCeeEEecCCCCHHHHHHHHHhccccCCC
Q 047490 173 DFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN--QISTVNYHGEVPAQERVENLNKFKNEDGD 250 (323)
Q Consensus 173 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~g~ 250 (323)
++.... .......+...+ ..++++++||++.++++.+++.|++. +..+..+||+|++.+|++++++|++ |+
T Consensus 640 ~v~~~~-~~~i~~~i~~el----~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~--Gk 712 (926)
T TIGR00580 640 FVMEYD-PELVREAIRREL----LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYK--GE 712 (926)
T ss_pred EEEecC-HHHHHHHHHHHH----HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHc--CC
Confidence 222211 111122233322 35789999999999999999999874 7789999999999999999999999 99
Q ss_pred CCEEEEecccccccCC-CCCEEEEcCCCC-CchhhhhhhcccccCCCcceEEEEeeCC
Q 047490 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPL-NSIDYLHRTGRTARMGAKGKVTSLVAKK 306 (323)
Q Consensus 251 ~~ilv~t~~~~~Gid~-~~~~vi~~~~p~-s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 306 (323)
.+|||||+++++|+|+ ++++||+++.|. +..+|.|++||+||.|+.|.|++++...
T Consensus 713 ~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 713 FQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred CCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 9999999999999999 999999999875 6778999999999999999999998653
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=265.47 Aligned_cols=264 Identities=17% Similarity=0.267 Sum_probs=192.3
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccc---cc-CCCCCEEEeChHHHHHHHHcCCCCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQED---SL-NNPIDMVVGTPGRILQHIEDGNMVYGD 91 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~Iii~Tp~~l~~~~~~~~~~~~~ 91 (323)
++.+++|++||++|+.|+++.+++++...++++..++|+........ .+ .+.++|+|+||+.+.. ...+++
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~ 383 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHN 383 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcc
Confidence 47799999999999999999999999888899999999977544332 22 3458999999986643 345789
Q ss_pred CcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccce
Q 047490 92 IKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASAR 171 (323)
Q Consensus 92 ~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (323)
++++|+||+|++. ...+..+.... .+.++++||||+.+...............+. ..+.....+.
T Consensus 384 l~lvVIDE~Hrfg-----~~qr~~l~~~~--------~~~~iL~~SATp~prtl~~~~~g~~~~s~i~--~~p~~r~~i~ 448 (681)
T PRK10917 384 LGLVIIDEQHRFG-----VEQRLALREKG--------ENPHVLVMTATPIPRTLAMTAYGDLDVSVID--ELPPGRKPIT 448 (681)
T ss_pred cceEEEechhhhh-----HHHHHHHHhcC--------CCCCEEEEeCCCCHHHHHHHHcCCCceEEEe--cCCCCCCCcE
Confidence 9999999999752 23333332221 1348999999997665443322111111111 1111111222
Q ss_pred eeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcc--------cHHHHHHHHhhC--CCeeEEecCCCCHHHHHHHH
Q 047490 172 HDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLN--------SSRAVDHFLNEN--QISTVNYHGEVPAQERVENL 241 (323)
Q Consensus 172 ~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~--------~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~ 241 (323)
..+.. ..+...+.+.+......+++++|||+..+ .++.+++.|.+. +..+..+||+|++.+|+.++
T Consensus 449 ~~~~~----~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~ 524 (681)
T PRK10917 449 TVVIP----DSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVM 524 (681)
T ss_pred EEEeC----cccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHH
Confidence 22222 11223344444443457889999999654 455667777655 46899999999999999999
Q ss_pred HhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCC-CchhhhhhhcccccCCCcceEEEEeeC
Q 047490 242 NKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPL-NSIDYLHRTGRTARMGAKGKVTSLVAK 305 (323)
Q Consensus 242 ~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~-s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 305 (323)
++|++ |+.+|||||+++++|+|+ ++++||+++.|. ....+.|++||+||.|..|.|++++..
T Consensus 525 ~~F~~--g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~~ 588 (681)
T PRK10917 525 AAFKA--GEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYKD 588 (681)
T ss_pred HHHHc--CCCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEECC
Confidence 99999 999999999999999999 999999999987 578899999999999999999999963
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=260.49 Aligned_cols=266 Identities=16% Similarity=0.236 Sum_probs=191.6
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccc---c-CCCCCEEEeChHHHHHHHHcCCCCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS---L-NNPIDMVVGTPGRILQHIEDGNMVYGD 91 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~Iii~Tp~~l~~~~~~~~~~~~~ 91 (323)
.+.+++|++||++|+.|+++.++++++..++++..++|+......... + .+.++|+|+||+.+.+ ...+.+
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~ 357 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKR 357 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccc
Confidence 477999999999999999999999998889999999998776543222 2 3457999999987653 345788
Q ss_pred CcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccce
Q 047490 92 IKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASAR 171 (323)
Q Consensus 92 ~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (323)
++++|+||+|++. ...+..+....... ...++++||||+.+...............+. ..+.....+.
T Consensus 358 l~lvVIDEaH~fg-----~~qr~~l~~~~~~~-----~~~~~l~~SATp~prtl~l~~~~~l~~~~i~--~~p~~r~~i~ 425 (630)
T TIGR00643 358 LALVIIDEQHRFG-----VEQRKKLREKGQGG-----FTPHVLVMSATPIPRTLALTVYGDLDTSIID--ELPPGRKPIT 425 (630)
T ss_pred cceEEEechhhcc-----HHHHHHHHHhcccC-----CCCCEEEEeCCCCcHHHHHHhcCCcceeeec--cCCCCCCceE
Confidence 9999999999753 22222222211100 1348999999987654433221111111111 0011111122
Q ss_pred eeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcc--------cHHHHHHHHhhC--CCeeEEecCCCCHHHHHHHH
Q 047490 172 HDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLN--------SSRAVDHFLNEN--QISTVNYHGEVPAQERVENL 241 (323)
Q Consensus 172 ~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~--------~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~ 241 (323)
..+. . .. ....+.+.+......+.+++|||+..+ .++.+++.|.+. +..+..+||+|++.+|..++
T Consensus 426 ~~~~--~-~~-~~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~ 501 (630)
T TIGR00643 426 TVLI--K-HD-EKDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVM 501 (630)
T ss_pred EEEe--C-cc-hHHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHH
Confidence 2221 1 12 224555555554457789999999764 455667777653 67899999999999999999
Q ss_pred HhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCC-CchhhhhhhcccccCCCcceEEEEee
Q 047490 242 NKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPL-NSIDYLHRTGRTARMGAKGKVTSLVA 304 (323)
Q Consensus 242 ~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~-s~~~~~Q~~GR~~R~~~~g~~~~~~~ 304 (323)
++|++ |+.+|||||+++++|+|+ ++++||+++.|. +...+.|++||+||.|++|.|++++.
T Consensus 502 ~~F~~--g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 502 EEFRE--GEVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred HHHHc--CCCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 99999 999999999999999999 999999999986 67889999999999999999999993
|
|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=269.86 Aligned_cols=263 Identities=18% Similarity=0.259 Sum_probs=197.4
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMVYGD 91 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~~~~ 91 (323)
++++++||+||++|+.|+++.+++.+...++++..++++.....+...+ .++++|+|+||+.+. ....+.+
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~ 722 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ-----SDVKWKD 722 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh-----CCCCHhh
Confidence 4789999999999999999999998777778888888876655544332 246899999997432 3455789
Q ss_pred CcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccce
Q 047490 92 IKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASAR 171 (323)
Q Consensus 92 ~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (323)
++++|+||+|++ +. .....+..+.. +.+++++|||+.+.........+..+..+...... ...+.
T Consensus 723 L~lLVIDEahrf---G~--~~~e~lk~l~~--------~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~--r~~v~ 787 (1147)
T PRK10689 723 LGLLIVDEEHRF---GV--RHKERIKAMRA--------DVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR--RLAVK 787 (1147)
T ss_pred CCEEEEechhhc---ch--hHHHHHHhcCC--------CCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC--CCCce
Confidence 999999999986 22 22333433332 44999999999887776665666565555432221 11222
Q ss_pred eeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC--CCeeEEecCCCCHHHHHHHHHhccccCC
Q 047490 172 HDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN--QISTVNYHGEVPAQERVENLNKFKNEDG 249 (323)
Q Consensus 172 ~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~g 249 (323)
..+.... .......++..+ ..+++++|||++.+.++.+++.|++. +..+..+||+|+..+|+.++.+|++ |
T Consensus 788 ~~~~~~~-~~~~k~~il~el----~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~--G 860 (1147)
T PRK10689 788 TFVREYD-SLVVREAILREI----LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH--Q 860 (1147)
T ss_pred EEEEecC-cHHHHHHHHHHH----hcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHh--c
Confidence 3222222 111122322222 24679999999999999999999876 6789999999999999999999999 9
Q ss_pred CCCEEEEecccccccCC-CCCEEEEcCCC-CCchhhhhhhcccccCCCcceEEEEeeC
Q 047490 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFP-LNSIDYLHRTGRTARMGAKGKVTSLVAK 305 (323)
Q Consensus 250 ~~~ilv~t~~~~~Gid~-~~~~vi~~~~p-~s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 305 (323)
+.+|||||+++++|+|+ ++++||+.+.+ .+..+|.|++||+||.|+.|.|++++..
T Consensus 861 k~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 861 RFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred CCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 99999999999999999 99999966543 3567899999999999999999998864
|
|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-34 Score=266.86 Aligned_cols=275 Identities=19% Similarity=0.228 Sum_probs=194.6
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEE
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYL 95 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~v 95 (323)
++.++|||+|+++|+.|+.+.++.+. ..++++..++|+...... ..++++|+|+||+++..++.+....+++++++
T Consensus 67 ~~~~~l~l~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lv 142 (720)
T PRK00254 67 EGGKAVYLVPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLV 142 (720)
T ss_pred cCCeEEEEeChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEE
Confidence 36799999999999999999999864 457899999998664322 23457999999999999888766678999999
Q ss_pred eecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccc-c-ceee
Q 047490 96 VLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIA-S-ARHD 173 (323)
Q Consensus 96 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~ 173 (323)
|+||+|.+.+.+++..+..++..+.. +.|++++|||+++. . .+...+...... ....+.... . ..+.
T Consensus 143 ViDE~H~l~~~~rg~~le~il~~l~~--------~~qiI~lSATl~n~-~-~la~wl~~~~~~-~~~rpv~l~~~~~~~~ 211 (720)
T PRK00254 143 VADEIHLIGSYDRGATLEMILTHMLG--------RAQILGLSATVGNA-E-ELAEWLNAELVV-SDWRPVKLRKGVFYQG 211 (720)
T ss_pred EEcCcCccCCccchHHHHHHHHhcCc--------CCcEEEEEccCCCH-H-HHHHHhCCcccc-CCCCCCcceeeEecCC
Confidence 99999999888888888888877653 34999999999753 2 222233221111 100011100 0 0011
Q ss_pred EEeccCC-hhH-HHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhh-------------------------------
Q 047490 174 FIKLSGS-ENK-LEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE------------------------------- 220 (323)
Q Consensus 174 ~~~~~~~-~~k-~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~------------------------------- 220 (323)
+...... ..+ ...+...+......++++||||++++.|+.++..+..
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 291 (720)
T PRK00254 212 FLFWEDGKIERFPNSWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLK 291 (720)
T ss_pred eeeccCcchhcchHHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHH
Confidence 1111111 111 1122222222223578999999999999887765532
Q ss_pred --CCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEE-------cCCCC-Cchhhhhhhcc
Q 047490 221 --NQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIM-------FDFPL-NSIDYLHRTGR 289 (323)
Q Consensus 221 --~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~-------~~~p~-s~~~~~Q~~GR 289 (323)
...++..+|++|++++|..+++.|++ |.++|||||++++.|+|+ ..+.||. ++.|. +..+|.||+||
T Consensus 292 ~~l~~gv~~hHagl~~~eR~~ve~~F~~--G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GR 369 (720)
T PRK00254 292 KALRGGVAFHHAGLGRTERVLIEDAFRE--GLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGR 369 (720)
T ss_pred HHHhhCEEEeCCCCCHHHHHHHHHHHHC--CCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhc
Confidence 12358899999999999999999999 999999999999999999 5555553 34433 56789999999
Q ss_pred cccCC--CcceEEEEeeCCc
Q 047490 290 TARMG--AKGKVTSLVAKKD 307 (323)
Q Consensus 290 ~~R~~--~~g~~~~~~~~~~ 307 (323)
+||.| ..|.+++++...+
T Consensus 370 AGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 370 AGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred cCCCCcCCCceEEEEecCcc
Confidence 99976 5789999887644
|
|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=264.14 Aligned_cols=276 Identities=18% Similarity=0.232 Sum_probs=196.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEe
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLV 96 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vI 96 (323)
+.+++|++|+++|+.|+++.++++. ..+.++....|+...... ....++|+|+||+++..++.++...+++++++|
T Consensus 65 ~~k~v~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvV 140 (674)
T PRK01172 65 GLKSIYIVPLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIV 140 (674)
T ss_pred CCcEEEEechHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEE
Confidence 5689999999999999999999864 457788888887554322 223579999999999998888777788999999
Q ss_pred ecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccc-ccee-eE
Q 047490 97 LDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIA-SARH-DF 174 (323)
Q Consensus 97 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~ 174 (323)
+||+|.+.+.+++..++.++..+.... .+.|+|++|||+++.. .+...+.... +.....+.+.. .+.. ..
T Consensus 141 iDEaH~l~d~~rg~~le~ll~~~~~~~-----~~~riI~lSATl~n~~--~la~wl~~~~-~~~~~r~vpl~~~i~~~~~ 212 (674)
T PRK01172 141 ADEIHIIGDEDRGPTLETVLSSARYVN-----PDARILALSATVSNAN--ELAQWLNASL-IKSNFRPVPLKLGILYRKR 212 (674)
T ss_pred EecchhccCCCccHHHHHHHHHHHhcC-----cCCcEEEEeCccCCHH--HHHHHhCCCc-cCCCCCCCCeEEEEEecCe
Confidence 999999988788888888877665432 2459999999997532 1222222211 11100000000 0000 00
Q ss_pred EeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC-------------------------CCeeEEec
Q 047490 175 IKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN-------------------------QISTVNYH 229 (323)
Q Consensus 175 ~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~-------------------------~~~~~~~~ 229 (323)
............+...+.+....++++||||++++.++.+++.|... ..++..+|
T Consensus 213 ~~~~~~~~~~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~h 292 (674)
T PRK01172 213 LILDGYERSQVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHH 292 (674)
T ss_pred eeecccccccccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEec
Confidence 00111111111123333333346789999999999999999887643 12578899
Q ss_pred CCCCHHHHHHHHHhccccCCCCCEEEEecccccccCCCCCEEEEcCC---------CCCchhhhhhhcccccCCC--cce
Q 047490 230 GEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDF---------PLNSIDYLHRTGRTARMGA--KGK 298 (323)
Q Consensus 230 ~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~~~~~vi~~~~---------p~s~~~~~Q~~GR~~R~~~--~g~ 298 (323)
|+|+.++|..+++.|++ |.++|||||+++++|+|++...||+.+. |.+..+|.||+||+||.|. .|.
T Consensus 293 agl~~~eR~~ve~~f~~--g~i~VLvaT~~la~Gvnipa~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~ 370 (674)
T PRK01172 293 AGLSNEQRRFIEEMFRN--RYIKVIVATPTLAAGVNLPARLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGI 370 (674)
T ss_pred CCCCHHHHHHHHHHHHc--CCCeEEEecchhhccCCCcceEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcce
Confidence 99999999999999999 9999999999999999997778888764 3477889999999999984 667
Q ss_pred EEEEeeCC
Q 047490 299 VTSLVAKK 306 (323)
Q Consensus 299 ~~~~~~~~ 306 (323)
+++++...
T Consensus 371 ~~i~~~~~ 378 (674)
T PRK01172 371 GYIYAASP 378 (674)
T ss_pred EEEEecCc
Confidence 77776544
|
|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-34 Score=243.56 Aligned_cols=277 Identities=20% Similarity=0.289 Sum_probs=225.0
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccc----ccCCCCCEEEeChHHHHHHHHcCCCCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQED----SLNNPIDMVVGTPGRILQHIEDGNMVYGD 91 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~ 91 (323)
.+.+-|+|||..+|++|.++.|+.-..+.++++..-.|......... ....++||||+|++-+..++..+ ..+.+
T Consensus 260 ~g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgd 338 (830)
T COG1202 260 GGKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGD 338 (830)
T ss_pred CCCeEEEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-Ccccc
Confidence 37799999999999999999999999999988877777665544432 22345799999999999988876 67899
Q ss_pred CcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccce
Q 047490 92 IKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASAR 171 (323)
Q Consensus 92 ~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (323)
+..||+||+|.+-+...++.+.-++..++..++.. |+|.+|||..++..-. ..+..-. ...+..+..+.
T Consensus 339 iGtVVIDEiHtL~deERG~RLdGLI~RLr~l~~~A-----Q~i~LSATVgNp~elA--~~l~a~l----V~y~~RPVplE 407 (830)
T COG1202 339 IGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFPGA-----QFIYLSATVGNPEELA--KKLGAKL----VLYDERPVPLE 407 (830)
T ss_pred cceEEeeeeeeccchhcccchhhHHHHHHHhCCCC-----eEEEEEeecCChHHHH--HHhCCee----EeecCCCCChh
Confidence 99999999999998889999999998888877543 9999999997654322 1222111 11223333455
Q ss_pred eeEEeccCChhHHHHHHHHhccCCC------CCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhcc
Q 047490 172 HDFIKLSGSENKLEALLQVLEPSLS------KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245 (323)
Q Consensus 172 ~~~~~~~~~~~k~~~l~~~l~~~~~------~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~ 245 (323)
.+.+...+...|.+.+.++.+...+ -.++||||++++..|+.++..|...|+++..||++++-.+|+.+...|.
T Consensus 408 rHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~ 487 (830)
T COG1202 408 RHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFA 487 (830)
T ss_pred HeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHh
Confidence 5666677677888888777755321 2379999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCEEEEecccccccCCCCCEEEEcC----C-CCCchhhhhhhcccccCC--CcceEEEEeeCC
Q 047490 246 NEDGDCPTLVCTDLAARGLDLDVDHVIMFD----F-PLNSIDYLHRTGRTARMG--AKGKVTSLVAKK 306 (323)
Q Consensus 246 ~~~g~~~ilv~t~~~~~Gid~~~~~vi~~~----~-p~s~~~~~Q~~GR~~R~~--~~g~~~~~~~~~ 306 (323)
+ +++.++|+|.+++.|+|++++.||+-. . .-|+++|.|+.||+||.+ ..|+++++..+.
T Consensus 488 ~--q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 488 A--QELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred c--CCcceEeehhhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 9 999999999999999999999998743 3 349999999999999988 478999998864
|
|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=258.53 Aligned_cols=283 Identities=21% Similarity=0.312 Sum_probs=213.2
Q ss_pred hhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCC
Q 047490 8 MLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNM 87 (323)
Q Consensus 8 ~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~ 87 (323)
|++.+.+. +.+++|+||+++|+.|.+++++ .+...|+++...+|+...... ...+++|+|+|||++..+.++...
T Consensus 68 i~~~l~~~-~~k~vYivPlkALa~Ek~~~~~-~~~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~ 142 (766)
T COG1204 68 ILSTLLEG-GGKVVYIVPLKALAEEKYEEFS-RLEELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPS 142 (766)
T ss_pred HHHHHHhc-CCcEEEEeChHHHHHHHHHHhh-hHHhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcc
Confidence 33344443 6799999999999999999999 555679999999999776552 223479999999999999998877
Q ss_pred CCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchh--hHHHHHHHhcCceeeecccccc
Q 047490 88 VYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKA--VQKLVDEECQGIAHLRTSTLHK 165 (323)
Q Consensus 88 ~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~--~~~~~~~~~~~~~~~~~~~~~~ 165 (323)
....+++||+||+|.+.+...++.++.++........ .++++++|||+++. +..++.-.... ...+......
T Consensus 143 ~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~-----~~rivgLSATlpN~~evA~wL~a~~~~-~~~rp~~l~~ 216 (766)
T COG1204 143 WIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNE-----LIRIVGLSATLPNAEEVADWLNAKLVE-SDWRPVPLRR 216 (766)
T ss_pred hhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCc-----ceEEEEEeeecCCHHHHHHHhCCcccc-cCCCCccccc
Confidence 8889999999999999987789999999988877653 35999999999864 44444332221 1111111122
Q ss_pred ccccceeeEEeccCCh-----hHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC-------------------
Q 047490 166 KIASARHDFIKLSGSE-----NKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN------------------- 221 (323)
Q Consensus 166 ~~~~~~~~~~~~~~~~-----~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~------------------- 221 (323)
..+.. ..+....... ...+...+.+......++++||||++++.+...++.+...
T Consensus 217 ~v~~~-~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~ 295 (766)
T COG1204 217 GVPYV-GAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASP 295 (766)
T ss_pred CCccc-eEEEEecCccccccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccc
Confidence 22222 2222222111 2334555555556678899999999999999999888730
Q ss_pred ------------------CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCCCCCEEEEcCC-------
Q 047490 222 ------------------QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDF------- 276 (323)
Q Consensus 222 ------------------~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~~~~~vi~~~~------- 276 (323)
..+++.||++++.++|.-+.+.|+. |.++||+||+++..|+|++++.||+-|.
T Consensus 296 ~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~--g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~ 373 (766)
T COG1204 296 ILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRK--GKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKG 373 (766)
T ss_pred cccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhc--CCceEEEechHHhhhcCCcceEEEEeeeEEEcCCC
Confidence 1245679999999999999999999 9999999999999999999999998542
Q ss_pred ---CCCchhhhhhhcccccCC--CcceEEEEee
Q 047490 277 ---PLNSIDYLHRTGRTARMG--AKGKVTSLVA 304 (323)
Q Consensus 277 ---p~s~~~~~Q~~GR~~R~~--~~g~~~~~~~ 304 (323)
+-+..++.|+.||+||.| ..|.++++.+
T Consensus 374 g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~ 406 (766)
T COG1204 374 GIVDIPVLDVLQMAGRAGRPGYDDYGEAIILAT 406 (766)
T ss_pred CeEECchhhHhhccCcCCCCCcCCCCcEEEEec
Confidence 347788999999999998 4666666663
|
|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-32 Score=251.29 Aligned_cols=274 Identities=20% Similarity=0.223 Sum_probs=198.0
Q ss_pred CCCccEEE-EcCCHHHHHHHHHHHHHhcccc-----------------------ceeEEEeecCccCCccccccCCCCCE
Q 047490 15 PRRPRAVV-LCPTRELSEQVFRVAKSISHHA-----------------------RFRSTMVSGGGRLRPQEDSLNNPIDM 70 (323)
Q Consensus 15 ~~~~~~lv-l~P~~~L~~q~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~I 70 (323)
.+.++.|| ++||++|+.|+++.++++.... .+++..++||.....+...+..+++|
T Consensus 59 ~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~I 138 (844)
T TIGR02621 59 AKVPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAV 138 (844)
T ss_pred ccccceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcE
Confidence 34455555 6799999999999999998754 47899999999988888888888999
Q ss_pred EEeChHHHHHHHHcCCC----------------CCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEE
Q 047490 71 VVGTPGRILQHIEDGNM----------------VYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTV 134 (323)
Q Consensus 71 ii~Tp~~l~~~~~~~~~----------------~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i 134 (323)
+|+|++.+ .+..+ .++++.++|+|||| ++.+|.+.+..|+..+.... ...+.|++
T Consensus 139 IVgT~D~i----~sr~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~---~~rprQtL 209 (844)
T TIGR02621 139 IVGTVDMI----GSRLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPP---DFLPLRVV 209 (844)
T ss_pred EEECHHHH----cCCccccccccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCc---ccccceEE
Confidence 99996544 22222 26789999999999 56679999999988642100 00135999
Q ss_pred EEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEeccCChhHHHHHHHHhcc-CCCCCCeEEEEecCcccHHH
Q 047490 135 LVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEP-SLSKGNKVMVFCNTLNSSRA 213 (323)
Q Consensus 135 ~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~~~~~~~~lvf~~~~~~~~~ 213 (323)
+||||++............................+.+ ++... ...|...+...+.. ....++++|||||+++.|+.
T Consensus 210 LFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki~q-~v~v~-~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~ 287 (844)
T TIGR02621 210 ELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKIVK-LVPPS-DEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRK 287 (844)
T ss_pred EEecCCCccHHHHHHHHccCCceeecccccccccceEE-EEecC-hHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHH
Confidence 99999988776655555444433322222222223333 33322 23344443333211 12356799999999999999
Q ss_pred HHHHHhhCCCeeEEecCCCCHHHHH-----HHHHhccc----cC-----CCCCEEEEecccccccCCCCCEEEEcCCCCC
Q 047490 214 VDHFLNENQISTVNYHGEVPAQERV-----ENLNKFKN----ED-----GDCPTLVCTDLAARGLDLDVDHVIMFDFPLN 279 (323)
Q Consensus 214 l~~~l~~~~~~~~~~~~~~~~~~r~-----~~~~~f~~----~~-----g~~~ilv~t~~~~~Gid~~~~~vi~~~~p~s 279 (323)
+++.|++.++ ..+||+|++.+|. .++++|++ .. +...|||||+++++|+|++.++||++..|
T Consensus 288 L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~d~VI~d~aP-- 363 (844)
T TIGR02621 288 VFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISADHLVCDLAP-- 363 (844)
T ss_pred HHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCcceEEECCCC--
Confidence 9999998776 8899999999999 77889975 11 12579999999999999966999997776
Q ss_pred chhhhhhhcccccCCCcc-eEEEEe
Q 047490 280 SIDYLHRTGRTARMGAKG-KVTSLV 303 (323)
Q Consensus 280 ~~~~~Q~~GR~~R~~~~g-~~~~~~ 303 (323)
...|+||+||+||.|+.| ..+.++
T Consensus 364 ~esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 364 FESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred HHHHHHHhcccCCCCCCCCceEEEE
Confidence 589999999999999753 334444
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-33 Score=241.50 Aligned_cols=280 Identities=20% Similarity=0.241 Sum_probs=186.0
Q ss_pred cccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCC------------cccccc-C-----CCCCEEE
Q 047490 11 VLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLR------------PQEDSL-N-----NPIDMVV 72 (323)
Q Consensus 11 ~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~-~-----~~~~Iii 72 (323)
.+.+.++.+++|++|+++|+.|+.+.++.++.. +++.++++.... ...... . ...+|++
T Consensus 23 ~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v 99 (358)
T TIGR01587 23 SIKSQKADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKEMGDSEEFEHLFPLYIHSNDKLFLDPITV 99 (358)
T ss_pred HHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhccCCchhHHHHHHHHhhchhhhhhCCeee
Confidence 344556789999999999999999999998643 344444432210 000000 0 1257999
Q ss_pred eChHHHHHHHHcCC----CC--CCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHH
Q 047490 73 GTPGRILQHIEDGN----MV--YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQK 146 (323)
Q Consensus 73 ~Tp~~l~~~~~~~~----~~--~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~ 146 (323)
+||+.+...+.... .. .-..+++|+||+|.+.+.++.. +..++..+.. .+.|++++|||+++...+
T Consensus 100 ~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~~-------~~~~~i~~SATlp~~l~~ 171 (358)
T TIGR01587 100 CTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLKD-------NDVPILLMSATLPKFLKE 171 (358)
T ss_pred CCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHHH-------cCCCEEEEecCchHHHHH
Confidence 99999988766521 01 1123789999999987654332 5555554442 134899999999976665
Q ss_pred HHHHHhcCceeeeccccccccccceeeEEe-ccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCC--
Q 047490 147 LVDEECQGIAHLRTSTLHKKIASARHDFIK-LSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQI-- 223 (323)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~-- 223 (323)
+................ .......+.+.. ......+...+.+++.. ...++++||||++.+.++.+++.|++.+.
T Consensus 172 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~ 249 (358)
T TIGR01587 172 YAEKIGYVEFNEPLDLK-EERRFERHRFIKIESDKVGEISSLERLLEF-IKKGGKIAIIVNTVDRAQEFYQQLKENAPEE 249 (358)
T ss_pred HHhcCCCcccccCCCCc-cccccccccceeeccccccCHHHHHHHHHH-hhCCCeEEEEECCHHHHHHHHHHHHhhcCCC
Confidence 55443222111000000 000001122211 11122344444444432 23568999999999999999999987665
Q ss_pred eeEEecCCCCHHHHHH----HHHhccccCCCCCEEEEecccccccCCCCCEEEEcCCCCCchhhhhhhcccccCCCc---
Q 047490 224 STVNYHGEVPAQERVE----NLNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAK--- 296 (323)
Q Consensus 224 ~~~~~~~~~~~~~r~~----~~~~f~~~~g~~~ilv~t~~~~~Gid~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~--- 296 (323)
.+..+||++++.+|.. +++.|++ +...+||||+++++|+|++++.||++..| ...|.||+||+||.|+.
T Consensus 250 ~~~~~h~~~~~~~r~~~~~~~~~~f~~--~~~~ilvaT~~~~~GiDi~~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~ 325 (358)
T TIGR01587 250 EIMLLHSRFTEKDRAKKEAELLEEMKK--NEKFVIVATQVIEASLDISADVMITELAP--IDSLIQRLGRLHRYGRKNGE 325 (358)
T ss_pred eEEEEECCCCHHHHHHHHHHHHHHhcC--CCCeEEEECcchhceeccCCCEEEEcCCC--HHHHHHHhccccCCCCCCCC
Confidence 5899999999999876 4889998 99999999999999999999999998766 67899999999998843
Q ss_pred -ceEEEEeeCCc
Q 047490 297 -GKVTSLVAKKD 307 (323)
Q Consensus 297 -g~~~~~~~~~~ 307 (323)
|.++++....+
T Consensus 326 ~~~~~v~~~~~~ 337 (358)
T TIGR01587 326 NFEVYIITIAPE 337 (358)
T ss_pred CCeEEEEeecCC
Confidence 36777766543
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=245.47 Aligned_cols=258 Identities=14% Similarity=0.177 Sum_probs=181.5
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcE
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKY 94 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~ 94 (323)
.+..++|||+||++|+.||.+.++++.......+..+.+|.... .+.+|+|+||+++.+... ..++++++
T Consensus 156 ~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~ 225 (501)
T PHA02558 156 NYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGM 225 (501)
T ss_pred cCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCE
Confidence 34559999999999999999999998754444555566664322 236899999999876432 24678999
Q ss_pred EeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHH--HHHhcCceeeeccccc--------
Q 047490 95 LVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLV--DEECQGIAHLRTSTLH-------- 164 (323)
Q Consensus 95 vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~--~~~~~~~~~~~~~~~~-------- 164 (323)
||+||||++.+. .+..++..+... .+++++||||.+...... ...+.... .......
T Consensus 226 iIvDEaH~~~~~----~~~~il~~~~~~--------~~~lGLTATp~~~~~~~~~~~~~fG~i~-~~v~~~~li~~g~l~ 292 (501)
T PHA02558 226 VIVDECHLFTGK----SLTSIITKLDNC--------KFKFGLTGSLRDGKANILQYVGLFGDIF-KPVTTSQLMEEGQVT 292 (501)
T ss_pred EEEEchhcccch----hHHHHHHhhhcc--------ceEEEEeccCCCccccHHHHHHhhCCce-EEecHHHHHhCCCcC
Confidence 999999998653 455565555322 179999999975432211 11111111 0000000
Q ss_pred --------cccc-----cc-----eeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeE
Q 047490 165 --------KKIA-----SA-----RHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTV 226 (323)
Q Consensus 165 --------~~~~-----~~-----~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~ 226 (323)
.... .. ...+........+...+.+.+....+.+.+++|||++.++++.+++.|++.+.++.
T Consensus 293 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~ 372 (501)
T PHA02558 293 DLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVY 372 (501)
T ss_pred CceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEE
Confidence 0000 00 00000011122233344444444334678899999999999999999999999999
Q ss_pred EecCCCCHHHHHHHHHhccccCCCCCEEEEe-cccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcc
Q 047490 227 NYHGEVPAQERVENLNKFKNEDGDCPTLVCT-DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG 297 (323)
Q Consensus 227 ~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t-~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g 297 (323)
.+||+++.++|..+++.|++ |...+|||| +.+++|+|+ ++++||++.++.|...|.||+||++|.+..+
T Consensus 373 ~i~G~~~~~eR~~i~~~~~~--~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 373 YVSGEVDTEDRNEMKKIAEG--GKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred EEeCCCCHHHHHHHHHHHhC--CCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCC
Confidence 99999999999999999998 888899998 899999999 9999999999999999999999999987543
|
|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-32 Score=250.83 Aligned_cols=268 Identities=16% Similarity=0.210 Sum_probs=192.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHh-ccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEE
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSI-SHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYL 95 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~v 95 (323)
+.+++|+.|+++++.|+++.+.+. ....+..++....+.. ....+.+|+|+||+.|.+.+.. ...++++++|
T Consensus 45 ~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~-d~~L~~v~~V 117 (819)
T TIGR01970 45 GGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGEN------KVSRRTRLEVVTEGILTRMIQD-DPELDGVGAL 117 (819)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcccc------ccCCCCcEEEECCcHHHHHHhh-CcccccCCEE
Confidence 569999999999999999998644 3334445554444322 2233468999999999998876 3568999999
Q ss_pred eecchhh-hhcCCChhhH-HHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceee
Q 047490 96 VLDEADT-MFDRGFGPDI-RKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHD 173 (323)
Q Consensus 96 IiDE~h~-~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (323)
|+||+|. .++.++.-.+ ..+...++ .+.++++||||++... +..++.....+..... ...+.++
T Consensus 118 IiDEaHER~L~~Dl~L~ll~~i~~~lr--------~dlqlIlmSATl~~~~---l~~~l~~~~vI~~~gr---~~pVe~~ 183 (819)
T TIGR01970 118 IFDEFHERSLDADLGLALALDVQSSLR--------EDLKILAMSATLDGER---LSSLLPDAPVVESEGR---SFPVEIR 183 (819)
T ss_pred EEeccchhhhccchHHHHHHHHHHhcC--------CCceEEEEeCCCCHHH---HHHHcCCCcEEEecCc---ceeeeeE
Confidence 9999994 5554443222 23333232 2459999999998654 3444443333322211 1123344
Q ss_pred EEeccCChhHH----HHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhh---CCCeeEEecCCCCHHHHHHHHHhccc
Q 047490 174 FIKLSGSENKL----EALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE---NQISTVNYHGEVPAQERVENLNKFKN 246 (323)
Q Consensus 174 ~~~~~~~~~k~----~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~ 246 (323)
|.......... ..+...+.. .++++|||+++..+++.+++.|++ .++.+..+||+|+.++|..+++.|++
T Consensus 184 y~~~~~~~~~~~~v~~~l~~~l~~---~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~ 260 (819)
T TIGR01970 184 YLPLRGDQRLEDAVSRAVEHALAS---ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQ 260 (819)
T ss_pred EeecchhhhHHHHHHHHHHHHHHh---cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhccc
Confidence 44333222111 223333332 357899999999999999999987 37889999999999999999999998
Q ss_pred cCCCCCEEEEecccccccCC-CCCEEEEcCCCC------------------CchhhhhhhcccccCCCcceEEEEeeCCc
Q 047490 247 EDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPL------------------NSIDYLHRTGRTARMGAKGKVTSLVAKKD 307 (323)
Q Consensus 247 ~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~------------------s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 307 (323)
|+.+|+|||+++++|+|+ ++++||++|.|. |...+.||+||+||. .+|.||.+++..+
T Consensus 261 --G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~ 337 (819)
T TIGR01970 261 --GRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQ 337 (819)
T ss_pred --CCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHH
Confidence 999999999999999999 999999999875 234589999999999 7999999999876
Q ss_pred HHHH
Q 047490 308 VLLA 311 (323)
Q Consensus 308 ~~~~ 311 (323)
...+
T Consensus 338 ~~~l 341 (819)
T TIGR01970 338 HQRL 341 (819)
T ss_pred HHhh
Confidence 5443
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-31 Score=242.00 Aligned_cols=277 Identities=16% Similarity=0.131 Sum_probs=195.0
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHhccc---cceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCC
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHH---ARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYG 90 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~ 90 (323)
..++.+++|++||++|+.|+...+.+..+. .+..+...+|+... ........+.+|+++|+.. ....++
T Consensus 219 ~~~~~~ilvt~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L-------~l~~L~ 290 (675)
T PHA02653 219 NFIERPIVLSLPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKL-------TLNKLF 290 (675)
T ss_pred ccCCcEEEEECcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCcc-------cccccc
Confidence 334679999999999999999999876543 24567778888652 1111222256899999752 113478
Q ss_pred CCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccc
Q 047490 91 DIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASA 170 (323)
Q Consensus 91 ~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (323)
++++||+||+|++...+ +.+..++..+... ..|+++||||++.....+ ..++..+..+.... .....+
T Consensus 291 ~v~~VVIDEaHEr~~~~--DllL~llk~~~~~-------~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~g--rt~~pV 358 (675)
T PHA02653 291 DYGTVIIDEVHEHDQIG--DIIIAVARKHIDK-------IRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPG--GTLFPI 358 (675)
T ss_pred cCCEEEccccccCccch--hHHHHHHHHhhhh-------cCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCC--CcCCCe
Confidence 89999999999876533 4444444333211 128999999998777654 56666555544331 122334
Q ss_pred eeeEEeccCC--------hhHHHHHHHHhccC-CCCCCeEEEEecCcccHHHHHHHHhhC--CCeeEEecCCCCHHHHHH
Q 047490 171 RHDFIKLSGS--------ENKLEALLQVLEPS-LSKGNKVMVFCNTLNSSRAVDHFLNEN--QISTVNYHGEVPAQERVE 239 (323)
Q Consensus 171 ~~~~~~~~~~--------~~k~~~l~~~l~~~-~~~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~ 239 (323)
.+.|...... ......+...+... ...++++||||++..+++.+++.|++. +..+..+||+|++. ++
T Consensus 359 ~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq 436 (675)
T PHA02653 359 SEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DE 436 (675)
T ss_pred EEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HH
Confidence 4444332210 11112233333322 124568999999999999999999876 68899999999964 56
Q ss_pred HHHhc-cccCCCCCEEEEecccccccCC-CCCEEEEcC---CCC---------CchhhhhhhcccccCCCcceEEEEeeC
Q 047490 240 NLNKF-KNEDGDCPTLVCTDLAARGLDL-DVDHVIMFD---FPL---------NSIDYLHRTGRTARMGAKGKVTSLVAK 305 (323)
Q Consensus 240 ~~~~f-~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~---~p~---------s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 305 (323)
.+++| ++ |+.+|||||+++++|+|+ ++++||++| .|. |.+.|.||+||+||. ++|.|+.+++.
T Consensus 437 ~l~~ff~~--gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~ 513 (675)
T PHA02653 437 ILEKVYSS--KNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDL 513 (675)
T ss_pred HHHHHhcc--CceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECH
Confidence 67777 56 899999999999999999 999999998 554 788999999999999 79999999998
Q ss_pred CcHHHHHHHH
Q 047490 306 KDVLLADRIE 315 (323)
Q Consensus 306 ~~~~~~~~i~ 315 (323)
.+...++++.
T Consensus 514 ~~~~pI~ri~ 523 (675)
T PHA02653 514 DLLKPIKRID 523 (675)
T ss_pred HHhHHHHHHh
Confidence 7765555544
|
|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-31 Score=249.14 Aligned_cols=265 Identities=13% Similarity=0.204 Sum_probs=191.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHHH-hccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEE
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKS-ISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYL 95 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~v 95 (323)
+.+++|++||++++.|+++.+.+ +....+..++...++.... ..+.+|+|+||+.+.+.+.. ...++++++|
T Consensus 48 ~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~~------~~~t~I~v~T~G~Llr~l~~-d~~L~~v~~I 120 (812)
T PRK11664 48 NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESKV------GPNTRLEVVTEGILTRMIQR-DPELSGVGLV 120 (812)
T ss_pred CCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCcccc------CCCCcEEEEChhHHHHHHhh-CCCcCcCcEE
Confidence 35899999999999999999864 4444455666655553321 22358999999999998876 4568999999
Q ss_pred eecchhhh-hcCCCh-hhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceee
Q 047490 96 VLDEADTM-FDRGFG-PDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHD 173 (323)
Q Consensus 96 IiDE~h~~-~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (323)
|+||+|.. ++..+. .....+...++ .++++++||||++... +..++.....+.... ....+.++
T Consensus 121 IlDEaHER~l~~Dl~L~ll~~i~~~lr--------~~lqlilmSATl~~~~---l~~~~~~~~~I~~~g---r~~pV~~~ 186 (812)
T PRK11664 121 ILDEFHERSLQADLALALLLDVQQGLR--------DDLKLLIMSATLDNDR---LQQLLPDAPVIVSEG---RSFPVERR 186 (812)
T ss_pred EEcCCCccccccchHHHHHHHHHHhCC--------ccceEEEEecCCCHHH---HHHhcCCCCEEEecC---ccccceEE
Confidence 99999962 222111 11122222222 2459999999998642 334444333332221 11224444
Q ss_pred EEeccCChhHHH-----HHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhh---CCCeeEEecCCCCHHHHHHHHHhcc
Q 047490 174 FIKLSGSENKLE-----ALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE---NQISTVNYHGEVPAQERVENLNKFK 245 (323)
Q Consensus 174 ~~~~~~~~~k~~-----~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~ 245 (323)
|..... .++.. .+...+.+ .++.+|||+++..+++.+++.|++ .+..+..+||+|+..+|..+++.|+
T Consensus 187 y~~~~~-~~~~~~~v~~~l~~~l~~---~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~ 262 (812)
T PRK11664 187 YQPLPA-HQRFDEAVARATAELLRQ---ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAP 262 (812)
T ss_pred eccCch-hhhHHHHHHHHHHHHHHh---CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhcccc
Confidence 444332 23332 23333332 357999999999999999999987 4778899999999999999999999
Q ss_pred ccCCCCCEEEEecccccccCC-CCCEEEEcCCCC------------------CchhhhhhhcccccCCCcceEEEEeeCC
Q 047490 246 NEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPL------------------NSIDYLHRTGRTARMGAKGKVTSLVAKK 306 (323)
Q Consensus 246 ~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~------------------s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 306 (323)
+ |+.+|+|||+++++|+|+ ++++||++|.+. |...|.||+||+||. .+|.||.+++..
T Consensus 263 ~--G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~ 339 (812)
T PRK11664 263 A--GRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKE 339 (812)
T ss_pred C--CCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHH
Confidence 8 999999999999999999 999999988764 335799999999999 699999999976
Q ss_pred cHH
Q 047490 307 DVL 309 (323)
Q Consensus 307 ~~~ 309 (323)
+..
T Consensus 340 ~~~ 342 (812)
T PRK11664 340 QAE 342 (812)
T ss_pred HHh
Confidence 553
|
|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=240.53 Aligned_cols=282 Identities=23% Similarity=0.372 Sum_probs=200.3
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCc
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIK 93 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~ 93 (323)
..++.++|||+||++|+.|+.+.+++++...+.++..++|+.........+ .+++|+|+||+.+...+......+.+++
T Consensus 55 ~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~-~~~~iiv~T~~~l~~~l~~~~~~~~~~~ 133 (773)
T PRK13766 55 HKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELW-EKAKVIVATPQVIENDLIAGRISLEDVS 133 (773)
T ss_pred HhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHH-hCCCEEEECHHHHHHHHHcCCCChhhCc
Confidence 345679999999999999999999998755445777788776654433333 3469999999999888777777888999
Q ss_pred EEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcC-------------------
Q 047490 94 YLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQG------------------- 154 (323)
Q Consensus 94 ~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~------------------- 154 (323)
+||+||||++.+... ...+........ ....++++||||....... ...+..
T Consensus 134 liVvDEaH~~~~~~~---~~~i~~~~~~~~-----~~~~il~lTaTP~~~~~~i-~~~~~~L~i~~v~~~~~~~~~v~~~ 204 (773)
T PRK13766 134 LLIFDEAHRAVGNYA---YVYIAERYHEDA-----KNPLVLGLTASPGSDEEKI-KEVCENLGIEHVEVRTEDDPDVKPY 204 (773)
T ss_pred EEEEECCcccccccc---HHHHHHHHHhcC-----CCCEEEEEEcCCCCCHHHH-HHHHHhCCceEEEEcCCCChhHHhh
Confidence 999999999865322 222333222221 1237999999984321111 000000
Q ss_pred -------------------------------------ceeeeccc-----cc---------ccccc--------------
Q 047490 155 -------------------------------------IAHLRTST-----LH---------KKIAS-------------- 169 (323)
Q Consensus 155 -------------------------------------~~~~~~~~-----~~---------~~~~~-------------- 169 (323)
........ .. .....
T Consensus 205 ~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~ 284 (773)
T PRK13766 205 VHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAE 284 (773)
T ss_pred hccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHH
Confidence 00000000 00 00000
Q ss_pred --------------------------------------------------ceeeEEeccCChhHHHHHHHHhccCC--CC
Q 047490 170 --------------------------------------------------ARHDFIKLSGSENKLEALLQVLEPSL--SK 197 (323)
Q Consensus 170 --------------------------------------------------~~~~~~~~~~~~~k~~~l~~~l~~~~--~~ 197 (323)
.......+.....|.+.|.+++.+.. ..
T Consensus 285 ~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~ 364 (773)
T PRK13766 285 AMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNP 364 (773)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCC
Confidence 00000001122456777777776543 46
Q ss_pred CCeEEEEecCcccHHHHHHHHhhCCCeeEEecCC--------CCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CC
Q 047490 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGE--------VPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DV 268 (323)
Q Consensus 198 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~--------~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~ 268 (323)
+.++||||+++.+++.+.+.|...++.+..+||. |+..+|.+++++|++ |+.++||+|+++++|+|+ .+
T Consensus 365 ~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~--g~~~vLvaT~~~~eGldi~~~ 442 (773)
T PRK13766 365 DSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRA--GEFNVLVSTSVAEEGLDIPSV 442 (773)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHc--CCCCEEEECChhhcCCCcccC
Confidence 7899999999999999999998888888888876 898999999999999 999999999999999999 99
Q ss_pred CEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcH
Q 047490 269 DHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308 (323)
Q Consensus 269 ~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~ 308 (323)
++||+|++|+|...|.||+||+||.+ .|.++.++.....
T Consensus 443 ~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~~l~~~~t~ 481 (773)
T PRK13766 443 DLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVVVLIAKGTR 481 (773)
T ss_pred CEEEEeCCCCCHHHHHHHhcccCcCC-CCEEEEEEeCCCh
Confidence 99999999999999999999999986 4888888886544
|
|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-29 Score=222.03 Aligned_cols=268 Identities=18% Similarity=0.257 Sum_probs=206.8
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCCCC
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMVYG 90 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~~~ 90 (323)
..|.++..++||.-||.|.++.+.+|++..++++..++|..........+ .+..+|+|+| +.+......+.
T Consensus 309 ~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGT-----HALiQd~V~F~ 383 (677)
T COG1200 309 EAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGT-----HALIQDKVEFH 383 (677)
T ss_pred HcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEc-----chhhhcceeec
Confidence 44789999999999999999999999999999999999988766654433 4558999999 55666677799
Q ss_pred CCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccc
Q 047490 91 DIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASA 170 (323)
Q Consensus 91 ~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (323)
++.++|+||-|+ |+.+.+..+..-... .+..++|||||.|.+-......-...+.+ ...+.....+
T Consensus 384 ~LgLVIiDEQHR-----FGV~QR~~L~~KG~~-------~Ph~LvMTATPIPRTLAlt~fgDldvS~I--dElP~GRkpI 449 (677)
T COG1200 384 NLGLVIIDEQHR-----FGVHQRLALREKGEQ-------NPHVLVMTATPIPRTLALTAFGDLDVSII--DELPPGRKPI 449 (677)
T ss_pred ceeEEEEecccc-----ccHHHHHHHHHhCCC-------CCcEEEEeCCCchHHHHHHHhccccchhh--ccCCCCCCce
Confidence 999999999996 777777776654331 34899999999887766554433322222 2222222223
Q ss_pred eeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHH--------HHHHHHhhC--CCeeEEecCCCCHHHHHHH
Q 047490 171 RHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSR--------AVDHFLNEN--QISTVNYHGEVPAQERVEN 240 (323)
Q Consensus 171 ~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~--------~l~~~l~~~--~~~~~~~~~~~~~~~r~~~ 240 (323)
.-.++.. .+...+.+.+.....+|+++.|.|+-.++.+ .+++.|+.. +..+..+||.|+.++++++
T Consensus 450 ~T~~i~~----~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~v 525 (677)
T COG1200 450 TTVVIPH----ERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAV 525 (677)
T ss_pred EEEEecc----ccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHH
Confidence 3333322 3444555555554558899999999877554 555666643 5679999999999999999
Q ss_pred HHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCC-CchhhhhhhcccccCCCcceEEEEeeCCc
Q 047490 241 LNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPL-NSIDYLHRTGRTARMGAKGKVTSLVAKKD 307 (323)
Q Consensus 241 ~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~-s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 307 (323)
+++|++ |+.+|||||.+.+.|+|+ +++..|+.+.-. -.++..|..||+||.+.++.|+.++.++.
T Consensus 526 M~~Fk~--~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 526 MEAFKE--GEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred HHHHHc--CCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 999999 999999999999999999 999999987543 78889999999999999999999999887
|
|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-29 Score=226.10 Aligned_cols=286 Identities=16% Similarity=0.162 Sum_probs=204.6
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHH-HHHHHcCC-------
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI-LQHIEDGN------- 86 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l-~~~~~~~~------- 86 (323)
..++.++|++||++||.|.++.+..++...++++..++|+... +.+....+++|+|+|...| ++++..+.
T Consensus 142 l~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg~~~--~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~ 219 (656)
T PRK12898 142 LAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSP--DERRAAYGADITYCTNKELVFDYLRDRLALGQRAS 219 (656)
T ss_pred hcCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCH--HHHHHHcCCCEEEECCCchhhhhcccccccccccc
Confidence 3478999999999999999999999999999999999999653 2333445689999999998 55655432
Q ss_pred ------------------CCCCCCcEEeecchhhhhcCC------------------ChhhHHHHHhhhcc---------
Q 047490 87 ------------------MVYGDIKYLVLDEADTMFDRG------------------FGPDIRKFLVPLKN--------- 121 (323)
Q Consensus 87 ------------------~~~~~~~~vIiDE~h~~~~~~------------------~~~~~~~i~~~~~~--------- 121 (323)
...+.+.+.|+||+|.++=++ .......+...+..
T Consensus 220 ~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~ 299 (656)
T PRK12898 220 DARLALESLHGRSSRSTQLLLRGLHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAA 299 (656)
T ss_pred chhhhhhhhccccCchhhhcccccceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECC
Confidence 223568899999999854100 00001111111100
Q ss_pred -----------------------ccCC------------------------------------CCC-----CC-------
Q 047490 122 -----------------------RASK------------------------------------PNG-----QG------- 130 (323)
Q Consensus 122 -----------------------~~~~------------------------------------~~~-----~~------- 130 (323)
.+.. ..+ ..
T Consensus 300 ~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQ 379 (656)
T PRK12898 300 EKRIELTEAGRARIAELAESLPPAWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQ 379 (656)
T ss_pred CCeEEEcHHHHHHHHHHhCcchhhcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHH
Confidence 0000 000 00
Q ss_pred -----------------------------ceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEeccCCh
Q 047490 131 -----------------------------FQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSE 181 (323)
Q Consensus 131 -----------------------------~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (323)
.++.+||||......++...+...+..++..... .....+.++.. ...
T Consensus 380 aieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~--~r~~~~~~v~~-t~~ 456 (656)
T PRK12898 380 MIEAKEGCELTDPRETLARITYQRFFRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPS--QRRHLPDEVFL-TAA 456 (656)
T ss_pred HHHHhcCCCCCcCceeeeeehHHHHHHhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCc--cceecCCEEEe-CHH
Confidence 2678889998877666666666555544333222 21222333333 356
Q ss_pred hHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccc
Q 047490 182 NKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAA 261 (323)
Q Consensus 182 ~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~ 261 (323)
.|...|.+.+......+.++||||++.+.++.+++.|.+.++++..+||+++..++..+...+.. | .|+|||+.++
T Consensus 457 ~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~~rE~~ii~~ag~~--g--~VlVATdmAg 532 (656)
T PRK12898 457 AKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQDAEEAAIVARAGQR--G--RITVATNMAG 532 (656)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcHHHHHHHHHHcCCC--C--cEEEEccchh
Confidence 78999999887754567899999999999999999999999999999999765554444444333 4 5999999999
Q ss_pred cccCC-CCC--------EEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHH
Q 047490 262 RGLDL-DVD--------HVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309 (323)
Q Consensus 262 ~Gid~-~~~--------~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 309 (323)
+|+|+ ... +||+++.|.|.+.|.||+||+||.|.+|.++.+++..|.-
T Consensus 533 RGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~l 589 (656)
T PRK12898 533 RGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDDL 589 (656)
T ss_pred cccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechhHHH
Confidence 99998 444 8999999999999999999999999999999999986643
|
|
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-29 Score=230.05 Aligned_cols=285 Identities=15% Similarity=0.180 Sum_probs=203.0
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHH-HHHHHcCC------CC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI-LQHIEDGN------MV 88 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l-~~~~~~~~------~~ 88 (323)
.++.+.|++||+.||.|.++.+..+....++++..+.|+.....+.+.. .+++|+++||..| ++++.... ..
T Consensus 118 ~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~i~g~~~~~~~r~~~-y~~dIvygT~~~l~fDyLrd~~~~~~~~~~ 196 (790)
T PRK09200 118 EGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDASEKKAI-YEADIIYTTNSELGFDYLRDNLADSKEDKV 196 (790)
T ss_pred cCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCcHHHHHHh-cCCCEEEECCccccchhHHhccccchhhhc
Confidence 4789999999999999999999999999999999999987733333322 3489999999999 56555432 35
Q ss_pred CCCCcEEeecchhhhhcCC----------------ChhhHHHHHhhhccc---------------------------cCC
Q 047490 89 YGDIKYLVLDEADTMFDRG----------------FGPDIRKFLVPLKNR---------------------------ASK 125 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~----------------~~~~~~~i~~~~~~~---------------------------~~~ 125 (323)
++.++++|+||+|.++=.+ .......+...+... ...
T Consensus 197 ~r~~~~~IvDEaDsiLiDea~tpliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~ 276 (790)
T PRK09200 197 QRPLNYAIIDEIDSILLDEAQTPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDN 276 (790)
T ss_pred ccccceEEEeccccceeccCCCceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCcc
Confidence 6889999999999954100 001111111111100 000
Q ss_pred CC-----------------------CCC----------------------------------------------------
Q 047490 126 PN-----------------------GQG---------------------------------------------------- 130 (323)
Q Consensus 126 ~~-----------------------~~~---------------------------------------------------- 130 (323)
.. +.+
T Consensus 277 l~~~~~~~~~~~i~~Al~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~ 356 (790)
T PRK09200 277 LYSLEHQVLYRHIILALRAHVLFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITI 356 (790)
T ss_pred ccChhhhHHHHHHHHHHHHHHHhhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhH
Confidence 00 000
Q ss_pred -------ceEEEEEeecchhhHHHHHHHhcCceeeecccccccccccee-eEEeccCChhHHHHHHHHhccCCCCCCeEE
Q 047490 131 -------FQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARH-DFIKLSGSENKLEALLQVLEPSLSKGNKVM 202 (323)
Q Consensus 131 -------~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~~~l~~~l~~~~~~~~~~l 202 (323)
.++.+||+|......++.+-+......++.. .+...... ..+. .....|...+.+.+......+.|+|
T Consensus 357 q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y~l~v~~IPt~---kp~~r~d~~~~i~-~~~~~K~~al~~~i~~~~~~~~pvL 432 (790)
T PRK09200 357 QNLFRMFPKLSGMTGTAKTEEKEFFEVYNMEVVQIPTN---RPIIRIDYPDKVF-VTLDEKYKAVIEEVKERHETGRPVL 432 (790)
T ss_pred HHHHHHhHHHhccCCCChHHHHHHHHHhCCcEEECCCC---CCcccccCCCeEE-cCHHHHHHHHHHHHHHHHhcCCCEE
Confidence 1566777776444433333332222222111 11111111 1122 2346788999888876545688999
Q ss_pred EEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC----CCC-----EEEE
Q 047490 203 VFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL----DVD-----HVIM 273 (323)
Q Consensus 203 vf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~----~~~-----~vi~ 273 (323)
|||++.+.++.++..|...++++..+||++...++..+...++. | .|+|||+.+++|+|+ .+. +||+
T Consensus 433 If~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~--g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~ 508 (790)
T PRK09200 433 IGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQK--G--AVTVATNMAGRGTDIKLGEGVHELGGLAVIG 508 (790)
T ss_pred EEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCC--C--eEEEEccchhcCcCCCcccccccccCcEEEe
Confidence 99999999999999999999999999999998888888888876 6 599999999999998 466 9999
Q ss_pred cCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHH
Q 047490 274 FDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309 (323)
Q Consensus 274 ~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 309 (323)
++.|.|.+.|.||+||+||.|.+|.++.+++..|.-
T Consensus 509 ~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~eD~l 544 (790)
T PRK09200 509 TERMESRRVDLQLRGRSGRQGDPGSSQFFISLEDDL 544 (790)
T ss_pred ccCCCCHHHHHHhhccccCCCCCeeEEEEEcchHHH
Confidence 999999999999999999999999999999976553
|
|
| >KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-30 Score=198.43 Aligned_cols=255 Identities=29% Similarity=0.486 Sum_probs=200.5
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHhcccc-ceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCC
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHA-RFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDI 92 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~ 92 (323)
.+....++|+|+|++|+.|+.++...+.+.. +.++..++||.......+.+.+-++|+|+||+++..+.++..+.++++
T Consensus 107 v~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~v 186 (387)
T KOG0329|consen 107 VDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNV 186 (387)
T ss_pred CCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhc
Confidence 3556788999999999999998877776554 579999999999888888888888999999999999999999999999
Q ss_pred cEEeecchhhhhcCC-ChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccc-cccccc
Q 047490 93 KYLVLDEADTMFDRG-FGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLH-KKIASA 170 (323)
Q Consensus 93 ~~vIiDE~h~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 170 (323)
+..|+|||+.++++- .+..+..|....+.. -|..++|||++.++...-.+++..+..+..+... ...-+.
T Consensus 187 khFvlDEcdkmle~lDMrRDvQEifr~tp~~--------KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGL 258 (387)
T KOG0329|consen 187 KHFVLDECDKMLEQLDMRRDVQEIFRMTPHE--------KQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGL 258 (387)
T ss_pred ceeehhhHHHHHHHHHHHHHHHHHhhcCccc--------ceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhH
Confidence 999999999987632 445556665544432 2899999999999998888888887665544333 334456
Q ss_pred eeeEEeccCC--hhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccC
Q 047490 171 RHDFIKLSGS--ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNED 248 (323)
Q Consensus 171 ~~~~~~~~~~--~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 248 (323)
.++|+..... ..|+..|++.|. ..+++||+.+... +. |+.
T Consensus 259 qQ~YvkLke~eKNrkl~dLLd~Le-----FNQVvIFvKsv~R-------l~------------------------f~k-- 300 (387)
T KOG0329|consen 259 QQYYVKLKENEKNRKLNDLLDVLE-----FNQVVIFVKSVQR-------LS------------------------FQK-- 300 (387)
T ss_pred HHHHHhhhhhhhhhhhhhhhhhhh-----hcceeEeeehhhh-------hh------------------------hhh--
Confidence 6666666542 345555555553 4689999988763 10 322
Q ss_pred CCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCC-cHHHHHHHHHHH
Q 047490 249 GDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKK-DVLLADRIEEAI 318 (323)
Q Consensus 249 g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~-~~~~~~~i~~~l 318 (323)
+ +|+|+..++|+|+ +++.+++||+|.+..+|.+|+||+||.|.+|.++.+.+.. |...+..+.+-+
T Consensus 301 ---r-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf 368 (387)
T KOG0329|consen 301 ---R-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRF 368 (387)
T ss_pred ---h-hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhh
Confidence 2 8999999999999 9999999999999999999999999999999999999875 445555555543
|
|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=223.64 Aligned_cols=277 Identities=17% Similarity=0.216 Sum_probs=187.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcC--------CCC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDG--------NMV 88 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~--------~~~ 88 (323)
+.++|||||+..|+.||.+++.+|.......+..++|+.... ......|+|+|++.+.....+. .+.
T Consensus 298 ~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~ 372 (732)
T TIGR00603 298 KKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLT 372 (732)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHhcCCCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhc
Confidence 357999999999999999999999754445666666653221 1223589999999875432221 122
Q ss_pred CCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHH--HHHHhcCceeeecccccc-
Q 047490 89 YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKL--VDEECQGIAHLRTSTLHK- 165 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~--~~~~~~~~~~~~~~~~~~- 165 (323)
-..|++||+||+|++.. ..+..++..+... ..+++||||....... +...+ .+..+...-...
T Consensus 373 ~~~~gLII~DEvH~lpA----~~fr~il~~l~a~---------~RLGLTATP~ReD~~~~~L~~Li-GP~vye~~~~eLi 438 (732)
T TIGR00603 373 NREWGLILLDEVHVVPA----AMFRRVLTIVQAH---------CKLGLTATLVREDDKITDLNFLI-GPKLYEANWMELQ 438 (732)
T ss_pred cccCCEEEEEccccccH----HHHHHHHHhcCcC---------cEEEEeecCcccCCchhhhhhhc-CCeeeecCHHHHH
Confidence 35789999999998743 5566666655443 5899999996433221 22211 121111100000
Q ss_pred ---ccccce--eeEEec--------------------cCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhh
Q 047490 166 ---KIASAR--HDFIKL--------------------SGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE 220 (323)
Q Consensus 166 ---~~~~~~--~~~~~~--------------------~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~ 220 (323)
...... ..+... .....|...+..++..+...+.++||||++...++.+++.|.
T Consensus 439 ~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~- 517 (732)
T TIGR00603 439 KKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG- 517 (732)
T ss_pred hCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-
Confidence 000000 000000 112346666666665544477899999999999999988873
Q ss_pred CCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCC-CCchhhhhhhcccccCCCcce
Q 047490 221 NQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFP-LNSIDYLHRTGRTARMGAKGK 298 (323)
Q Consensus 221 ~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p-~s~~~~~Q~~GR~~R~~~~g~ 298 (323)
+..+||+++..+|..++++|+. .+.+++||+|+++.+|+|+ ++++||+++.| .|..+|.||+||++|.+..|.
T Consensus 518 ----~~~I~G~ts~~ER~~il~~Fr~-~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~ 592 (732)
T TIGR00603 518 ----KPFIYGPTSQQERMQILQNFQH-NPKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSD 592 (732)
T ss_pred ----CceEECCCCHHHHHHHHHHHHh-CCCccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCc
Confidence 4568999999999999999986 1377999999999999999 99999999987 599999999999999876554
Q ss_pred E-------EEEeeCC--cHHHHHHHHHHH
Q 047490 299 V-------TSLVAKK--DVLLADRIEEAI 318 (323)
Q Consensus 299 ~-------~~~~~~~--~~~~~~~i~~~l 318 (323)
+ |.+++.. |.....+-.+.|
T Consensus 593 ~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl 621 (732)
T TIGR00603 593 AEEYNAFFYSLVSKDTQEMYYSTKRQRFL 621 (732)
T ss_pred cccccceEEEEecCCchHHHHHHHHHHHH
Confidence 3 7777765 444444444444
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-29 Score=231.47 Aligned_cols=284 Identities=18% Similarity=0.202 Sum_probs=214.9
Q ss_pred ccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccc---c-CC--CCCEEEeChHHHHHHHH--cCCCCC
Q 047490 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS---L-NN--PIDMVVGTPGRILQHIE--DGNMVY 89 (323)
Q Consensus 18 ~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~--~~~Iii~Tp~~l~~~~~--~~~~~~ 89 (323)
+..|||.|..+|+..+...+.. .++....+.++.....+... + .+ ..+|++-|||++...-. .....+
T Consensus 305 gitvVISPL~SLm~DQv~~L~~----~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L 380 (941)
T KOG0351|consen 305 GVTVVISPLISLMQDQVTHLSK----KGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADL 380 (941)
T ss_pred CceEEeccHHHHHHHHHHhhhh----cCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhc
Confidence 4899999999999877666633 36788888887666433222 2 22 47899999999854321 111122
Q ss_pred C---CCcEEeecchhhhhcCC--ChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccc
Q 047490 90 G---DIKYLVLDEADTMFDRG--FGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLH 164 (323)
Q Consensus 90 ~---~~~~vIiDE~h~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (323)
. -+.++|+||||++.+|+ |++.+..+........ +++++++|||....+...+-..+.-...... ...
T Consensus 381 ~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~------~vP~iALTATAT~~v~~DIi~~L~l~~~~~~-~~s 453 (941)
T KOG0351|consen 381 YARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFP------GVPFIALTATATERVREDVIRSLGLRNPELF-KSS 453 (941)
T ss_pred cCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhCC------CCCeEEeehhccHHHHHHHHHHhCCCCccee-ccc
Confidence 2 38899999999999999 8898888876554432 3699999999999888887766554322211 111
Q ss_pred cccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhc
Q 047490 165 KKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKF 244 (323)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f 244 (323)
...++....+..-.+ ......+...+... ......||||.++.+++.+...|+..+.....||++|++.+|+.|.+.|
T Consensus 454 fnR~NL~yeV~~k~~-~~~~~~~~~~~~~~-~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w 531 (941)
T KOG0351|consen 454 FNRPNLKYEVSPKTD-KDALLDILEESKLR-HPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAW 531 (941)
T ss_pred CCCCCceEEEEeccC-ccchHHHHHHhhhc-CCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHH
Confidence 122233322222211 22333333334332 4567999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHH
Q 047490 245 KNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEE 316 (323)
Q Consensus 245 ~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~ 316 (323)
.. ++++|++||=++++|||- ++..||||+.|+|...|.|-+|||||.|....|++|+...|...++.+..
T Consensus 532 ~~--~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~ 602 (941)
T KOG0351|consen 532 MS--DKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRLLT 602 (941)
T ss_pred hc--CCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHHHH
Confidence 99 999999999999999999 99999999999999999999999999999999999999998877776544
|
|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-29 Score=238.90 Aligned_cols=258 Identities=16% Similarity=0.259 Sum_probs=190.0
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccC-Cc----ccccc-CCCCCEEEeChHHHHHHHHcCCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRL-RP----QEDSL-NNPIDMVVGTPGRILQHIEDGNMVY 89 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~-~~~~~Iii~Tp~~l~~~~~~~~~~~ 89 (323)
++++++||+||++|+.|+.+.++.++...++.+..++++... .. ....+ .++++|+|+||+++.+.+. .+..
T Consensus 122 ~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~ 199 (1176)
T PRK09401 122 KGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPK 199 (1176)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccc
Confidence 478999999999999999999999998888888878776542 11 11222 3458999999999988766 3445
Q ss_pred CCCcEEeecchhhhhc-----------CCCh-hhHHHHHhhhccc----------------cCCCCCCCceEEEEEeecc
Q 047490 90 GDIKYLVLDEADTMFD-----------RGFG-PDIRKFLVPLKNR----------------ASKPNGQGFQTVLVSATMT 141 (323)
Q Consensus 90 ~~~~~vIiDE~h~~~~-----------~~~~-~~~~~i~~~~~~~----------------~~~~~~~~~~~i~~sat~~ 141 (323)
..++++|+||||++++ .||. +.+..++..++.. .....+.+.|++++|||.+
T Consensus 200 ~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~ 279 (1176)
T PRK09401 200 KKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGR 279 (1176)
T ss_pred cccCEEEEEChHHhhhcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCC
Confidence 6799999999999986 4564 4566666555430 0000111458999999998
Q ss_pred hh-hHHHHHHHhcCceeeeccccccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCccc---HHHHHHH
Q 047490 142 KA-VQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNS---SRAVDHF 217 (323)
Q Consensus 142 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~---~~~l~~~ 217 (323)
+. ....+.+ ....+..........++.+.+.... ++...+.+++... +.++||||++... ++.+++.
T Consensus 280 ~~~~~~~l~~---~ll~~~v~~~~~~~rnI~~~yi~~~---~k~~~L~~ll~~l---~~~~LIFv~t~~~~~~ae~l~~~ 350 (1176)
T PRK09401 280 PRGNRVKLFR---ELLGFEVGSPVFYLRNIVDSYIVDE---DSVEKLVELVKRL---GDGGLIFVPSDKGKEYAEELAEY 350 (1176)
T ss_pred ccchHHHHhh---ccceEEecCcccccCCceEEEEEcc---cHHHHHHHHHHhc---CCCEEEEEecccChHHHHHHHHH
Confidence 64 3321111 1112222222334455666666543 4666777777543 3579999999888 9999999
Q ss_pred HhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEE----ecccccccCC-C-CCEEEEcCCCC------Cchhhhh
Q 047490 218 LNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC----TDLAARGLDL-D-VDHVIMFDFPL------NSIDYLH 285 (323)
Q Consensus 218 l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~----t~~~~~Gid~-~-~~~vi~~~~p~------s~~~~~Q 285 (323)
|+..|+.+..+||+| +..+++|++ |+++|||| |+.+++|+|+ + +++|||||.|. ....+.+
T Consensus 351 L~~~gi~v~~~hg~l-----~~~l~~F~~--G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~ 423 (1176)
T PRK09401 351 LEDLGINAELAISGF-----ERKFEKFEE--GEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPF 423 (1176)
T ss_pred HHHCCCcEEEEeCcH-----HHHHHHHHC--CCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHH
Confidence 999999999999999 233599999 99999999 5889999999 7 89999999998 6677889
Q ss_pred hhcccc
Q 047490 286 RTGRTA 291 (323)
Q Consensus 286 ~~GR~~ 291 (323)
+.||..
T Consensus 424 ~~~r~~ 429 (1176)
T PRK09401 424 LLLRLL 429 (1176)
T ss_pred HHHHHH
Confidence 999985
|
|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-29 Score=233.96 Aligned_cols=306 Identities=19% Similarity=0.258 Sum_probs=227.0
Q ss_pred hhhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccc--eeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHc
Q 047490 7 AMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHAR--FRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIED 84 (323)
Q Consensus 7 ~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~ 84 (323)
+++.++.+.+..++|+|.||++|++++.++++++....+ +.+....|+...........++++|++|||+++..++.+
T Consensus 105 PIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr 184 (851)
T COG1205 105 PILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLR 184 (851)
T ss_pred HHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhcc
Confidence 455566666777999999999999999999999998887 778888888777777677788899999999999875544
Q ss_pred C----CCCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeec
Q 047490 85 G----NMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRT 160 (323)
Q Consensus 85 ~----~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~ 160 (323)
. ...++++++||+||+|.+-. .++.++-.+++.+...+... +.++|+|++|||..+......+ .........
T Consensus 185 ~~~~~~~~~~~Lk~lVvDElHtYrG-v~GS~vA~llRRL~~~~~~~-~~~~q~i~~SAT~~np~e~~~~-l~~~~f~~~- 260 (851)
T COG1205 185 NHDAWLWLLRNLKYLVVDELHTYRG-VQGSEVALLLRRLLRRLRRY-GSPLQIICTSATLANPGEFAEE-LFGRDFEVP- 260 (851)
T ss_pred CcchHHHHHhcCcEEEEecceeccc-cchhHHHHHHHHHHHHHhcc-CCCceEEEEeccccChHHHHHH-hcCCcceee-
Confidence 3 34577899999999998754 48888888888888776433 3578999999999766544333 222222221
Q ss_pred cccccccccceeeEEeccC--------ChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHH----HHHhhCC----Ce
Q 047490 161 STLHKKIASARHDFIKLSG--------SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVD----HFLNENQ----IS 224 (323)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~--------~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~----~~l~~~~----~~ 224 (323)
..........++.....+. ...+...+..+.......+-++|+|+.++..++.+. +.+...+ ..
T Consensus 261 v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~ 340 (851)
T COG1205 261 VDEDGSPRGLRYFVRREPPIRELAESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDA 340 (851)
T ss_pred ccCCCCCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhh
Confidence 1112222223333332220 123444444555445557889999999999999996 3344344 56
Q ss_pred eEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCC-CchhhhhhhcccccCCCcceEEEE
Q 047490 225 TVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPL-NSIDYLHRTGRTARMGAKGKVTSL 302 (323)
Q Consensus 225 ~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~-s~~~~~Q~~GR~~R~~~~g~~~~~ 302 (323)
+..+++++...+|..+..+|+. |+..++++|++++.|+|+ .++.||..+.|. +...+.|+.||+||.++.+..+..
T Consensus 341 v~~~~~~~~~~er~~ie~~~~~--g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v 418 (851)
T COG1205 341 VSTYRAGLHREERRRIEAEFKE--GELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVV 418 (851)
T ss_pred eeeccccCCHHHHHHHHHHHhc--CCccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEE
Confidence 7889999999999999999999 999999999999999999 999999999999 999999999999999866655555
Q ss_pred eeC--CcHHHHHHHHHHH
Q 047490 303 VAK--KDVLLADRIEEAI 318 (323)
Q Consensus 303 ~~~--~~~~~~~~i~~~l 318 (323)
... -|.......++.+
T Consensus 419 ~~~~~~d~yy~~~p~~~~ 436 (851)
T COG1205 419 LRSDPLDSYYLRHPEELL 436 (851)
T ss_pred eCCCccchhhhhCcHhhh
Confidence 442 2334444444433
|
|
| >KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=210.47 Aligned_cols=287 Identities=31% Similarity=0.489 Sum_probs=218.5
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccc---cceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCC
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHH---ARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGD 91 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~ 91 (323)
++.|.++|+-|+++|+.|+.+.++++-.. ..++.....||.....+...+.++.+|+|+||+++.+.+......+.+
T Consensus 284 pNap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~ 363 (725)
T KOG0349|consen 284 PNAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTH 363 (725)
T ss_pred CCCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeee
Confidence 56799999999999999999966666433 345666788888888888899999999999999999999998889999
Q ss_pred CcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchh-hHHHHHHHhcCceeeeccccccccccc
Q 047490 92 IKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKA-VQKLVDEECQGIAHLRTSTLHKKIASA 170 (323)
Q Consensus 92 ~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (323)
++++++||++.++..++.+.+..+...++..++.. ..+|.+++|||+.-. ....-++.+--+.-.... .+...+..
T Consensus 364 crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg--~rlq~~vCsatlh~feVkk~~ervmhfptwVdLk-geD~vpet 440 (725)
T KOG0349|consen 364 CRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDG--FRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLK-GEDLVPET 440 (725)
T ss_pred eEEEEecchhhhhhcccHHHHHHHhccchhhhcCC--cccccceeeeEEeEEEeeehhhhhccCceeEecc-cccccchh
Confidence 99999999999999999999999998888876542 357999999998532 222222222111111111 12222233
Q ss_pred eeeEEeccCC--hhHHH----------------------------HHHHHhccC-------CCCCCeEEEEecCcccHHH
Q 047490 171 RHDFIKLSGS--ENKLE----------------------------ALLQVLEPS-------LSKGNKVMVFCNTLNSSRA 213 (323)
Q Consensus 171 ~~~~~~~~~~--~~k~~----------------------------~l~~~l~~~-------~~~~~~~lvf~~~~~~~~~ 213 (323)
.|++...... +.... .-..+++.. .....+.||||.+...|..
T Consensus 441 vHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDn 520 (725)
T KOG0349|consen 441 VHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDN 520 (725)
T ss_pred hccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchH
Confidence 3332222110 01111 111111111 0234689999999999999
Q ss_pred HHHHHhhC---CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcc
Q 047490 214 VDHFLNEN---QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGR 289 (323)
Q Consensus 214 l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR 289 (323)
+.+++.++ .+++..+||+..+.+|++.++.|++ +..+.||||+++.+|+|+ .+..+|+..+|.....|.+|+||
T Consensus 521 Ler~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk--~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigr 598 (725)
T KOG0349|consen 521 LERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKK--FDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGR 598 (725)
T ss_pred HHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhh--cCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhc
Confidence 99999876 4578889999999999999999999 999999999999999999 99999999999999999999999
Q ss_pred cccCCCcceEEEEeeCC
Q 047490 290 TARMGAKGKVTSLVAKK 306 (323)
Q Consensus 290 ~~R~~~~g~~~~~~~~~ 306 (323)
+||...-|.+|+++...
T Consensus 599 vgraermglaislvat~ 615 (725)
T KOG0349|consen 599 VGRAERMGLAISLVATV 615 (725)
T ss_pred cchhhhcceeEEEeecc
Confidence 99998888888887653
|
|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.8e-29 Score=223.30 Aligned_cols=285 Identities=15% Similarity=0.169 Sum_probs=206.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHH-HHHHHcC------CCCC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI-LQHIEDG------NMVY 89 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l-~~~~~~~------~~~~ 89 (323)
+..+.|++||..||.|.++.+.++....++++..+.|+.....+.... .++|+|+||..| ++++..+ ...+
T Consensus 97 G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~ 174 (745)
T TIGR00963 97 GKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQ 174 (745)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhc
Confidence 557999999999999999999999999999999999987754443333 379999999999 8888776 3467
Q ss_pred CCCcEEeecchhhhhcCC-Ch----------h-----hHHHHHhhhccc----------------------------cCC
Q 047490 90 GDIKYLVLDEADTMFDRG-FG----------P-----DIRKFLVPLKNR----------------------------ASK 125 (323)
Q Consensus 90 ~~~~~vIiDE~h~~~~~~-~~----------~-----~~~~i~~~~~~~----------------------------~~~ 125 (323)
+.+.++|+||+|.++-.+ .. + ....+...+... ...
T Consensus 175 r~l~~aIIDEaDs~LIDeaRtpLiisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~l 254 (745)
T TIGR00963 175 RPFHFAIIDEVDSILIDEARTPLIISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNL 254 (745)
T ss_pred cccceeEeecHHHHhHHhhhhHHhhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccc
Confidence 889999999999965210 00 0 001111111000 000
Q ss_pred CCCCC---------------------------------------------------------------------------
Q 047490 126 PNGQG--------------------------------------------------------------------------- 130 (323)
Q Consensus 126 ~~~~~--------------------------------------------------------------------------- 130 (323)
....+
T Consensus 255 y~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~q 334 (745)
T TIGR00963 255 YDLENSPLIHYINNALKAKELFEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQ 334 (745)
T ss_pred cChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHH
Confidence 00000
Q ss_pred ------ceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEE
Q 047490 131 ------FQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVF 204 (323)
Q Consensus 131 ------~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf 204 (323)
.++.+||+|...+..++.+-+......++.-........... + ......|..++.+.+.+....+.|+|||
T Consensus 335 n~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~IPtnkp~~R~d~~d~--i-~~t~~~k~~ai~~~i~~~~~~grpvLV~ 411 (745)
T TIGR00963 335 NFFRLYEKLSGMTGTAKTEEEEFEKIYNLEVVVVPTNRPVIRKDLSDL--V-YKTEEEKWKAVVDEIKERHAKGQPVLVG 411 (745)
T ss_pred HHHhhCchhhccCCCcHHHHHHHHHHhCCCEEEeCCCCCeeeeeCCCe--E-EcCHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 156677777755444444433333333222211111111111 1 1224568888888776655689999999
Q ss_pred ecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-C-------CCEEEEcCC
Q 047490 205 CNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-D-------VDHVIMFDF 276 (323)
Q Consensus 205 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~-------~~~vi~~~~ 276 (323)
|++...++.+++.|.+.+++...+|++ ..+|+..+..|.. +...|+|||+.+++|+|+ . ..+||+++.
T Consensus 412 t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag--~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~ 487 (745)
T TIGR00963 412 TTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAG--RKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTER 487 (745)
T ss_pred eCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcC--CCceEEEEeccccCCcCCCccchhhcCCcEEEecCC
Confidence 999999999999999999999999998 6788889999987 777899999999999999 7 449999999
Q ss_pred CCCchhhhhhhcccccCCCcceEEEEeeCCcHHH
Q 047490 277 PLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310 (323)
Q Consensus 277 p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~ 310 (323)
|.|.+.|.|+.||+||.|.+|.+..+++..|.-.
T Consensus 488 p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD~l~ 521 (745)
T TIGR00963 488 HESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNLM 521 (745)
T ss_pred CCcHHHHHHHhccccCCCCCcceEEEEeccHHHH
Confidence 9999999999999999999999999999876543
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. |
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-28 Score=228.95 Aligned_cols=138 Identities=22% Similarity=0.427 Sum_probs=120.6
Q ss_pred hhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHh-hCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc
Q 047490 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLN-ENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL 259 (323)
Q Consensus 181 ~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~-~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~ 259 (323)
+.|++.|.+++... .+.|+||||++..++..+.+.|+ ..|+.+..+||+|+..+|..+++.|++++|..+|||||.+
T Consensus 478 d~Ki~~L~~~L~~~--~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdv 555 (956)
T PRK04914 478 DPRVEWLIDFLKSH--RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEI 555 (956)
T ss_pred CHHHHHHHHHHHhc--CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechh
Confidence 34677778877664 46799999999999999999994 5699999999999999999999999985557899999999
Q ss_pred cccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHh
Q 047490 260 AARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRK 320 (323)
Q Consensus 260 ~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~ 320 (323)
+++|+|+ .+++||+||+|+|+..|.||+||++|.|+.+.+.++....+......+.+.+..
T Consensus 556 gseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~ 617 (956)
T PRK04914 556 GSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHE 617 (956)
T ss_pred hccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhh
Confidence 9999999 999999999999999999999999999999988777776666666666666654
|
|
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-29 Score=225.71 Aligned_cols=281 Identities=19% Similarity=0.254 Sum_probs=205.0
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcC---CCCCC
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDG---NMVYG 90 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~---~~~~~ 90 (323)
...+.+++|++|+++||.++.+.+.+-+...|+++..++|+....... -..++|+|+|||+|.-.-+++ ..+++
T Consensus 161 ~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~ 237 (1230)
T KOG0952|consen 161 AKDDFKIVYIAPMKALAAEMVDKFSKKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFS 237 (1230)
T ss_pred ccCCceEEEEechHHHHHHHHHHHhhhcccccceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhh
Confidence 456789999999999999999999999988899999999997765443 234799999999996554443 24577
Q ss_pred CCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcC--ceeeeccccccccc
Q 047490 91 DIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQG--IAHLRTSTLHKKIA 168 (323)
Q Consensus 91 ~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 168 (323)
.+++||+||+|.+.+ .+++.++.|+.+...... .....++++++|||+|+-.. +.+++.- +..+......-.+.
T Consensus 238 ~V~LviIDEVHlLhd-~RGpvlEtiVaRtlr~ve-ssqs~IRivgLSATlPN~eD--vA~fL~vn~~~glfsFd~~yRPv 313 (1230)
T KOG0952|consen 238 LVRLVIIDEVHLLHD-DRGPVLETIVARTLRLVE-SSQSMIRIVGLSATLPNYED--VARFLRVNPYAGLFSFDQRYRPV 313 (1230)
T ss_pred heeeEEeeeehhhcC-cccchHHHHHHHHHHHHH-hhhhheEEEEeeccCCCHHH--HHHHhcCCCccceeeeccccccc
Confidence 899999999998876 589999999887764332 23357899999999997443 2222222 11111111111111
Q ss_pred cceeeEEeccCC----------hhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC-----------------
Q 047490 169 SARHDFIKLSGS----------ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN----------------- 221 (323)
Q Consensus 169 ~~~~~~~~~~~~----------~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~----------------- 221 (323)
.....++-.... ....+++.+. ...|.+++|||.+++.+...++.|.+.
T Consensus 314 pL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~----~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k 389 (1230)
T KOG0952|consen 314 PLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEF----LQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNK 389 (1230)
T ss_pred ceeeeEEeeecccchhhhhhHHHHHHHHHHHH----HHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhH
Confidence 222222222221 1122333333 357899999999999999888887541
Q ss_pred ------CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCCCCCEEEEcCCCC-----------Cchhhh
Q 047490 222 ------QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPL-----------NSIDYL 284 (323)
Q Consensus 222 ------~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~~~~~vi~~~~p~-----------s~~~~~ 284 (323)
..+.+++|.+|...+|.-+...|.. |.++||+||.++..|+|+++.+||+-|.+. +.-+..
T Consensus 390 ~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~--G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVl 467 (1230)
T KOG0952|consen 390 QLKELFQQGMGIHHAGMLRSDRQLVEKEFKE--GHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVL 467 (1230)
T ss_pred HHHHHHHhhhhhcccccchhhHHHHHHHHhc--CCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHH
Confidence 1456789999999999999999999 999999999999999999999999977652 445668
Q ss_pred hhhcccccCC--CcceEEEEeeCCc
Q 047490 285 HRTGRTARMG--AKGKVTSLVAKKD 307 (323)
Q Consensus 285 Q~~GR~~R~~--~~g~~~~~~~~~~ 307 (323)
|..|||||.+ ..|.++++.+..-
T Consensus 468 QifGRAGRPqFd~~G~giIiTt~dk 492 (1230)
T KOG0952|consen 468 QIFGRAGRPQFDSSGEGIIITTRDK 492 (1230)
T ss_pred HHHhccCCCCCCCCceEEEEecccH
Confidence 9999999976 5788887777543
|
|
| >KOG0354 consensus DEAD-box like helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-28 Score=217.29 Aligned_cols=298 Identities=21% Similarity=0.309 Sum_probs=203.2
Q ss_pred hhhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCC
Q 047490 7 AMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGN 86 (323)
Q Consensus 7 ~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~ 86 (323)
.|+.++...++.++++++|++-|+.|+...+..++.. ..+....||.........+-...+|+|+||+.+.+.+.+..
T Consensus 96 Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~ 173 (746)
T KOG0354|consen 96 IMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGL 173 (746)
T ss_pred HHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhccccc
Confidence 3566777777899999999999999999888888764 45666666655444444444456999999999999888765
Q ss_pred CC-CCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHH----------------
Q 047490 87 MV-YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVD---------------- 149 (323)
Q Consensus 87 ~~-~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~---------------- 149 (323)
.. ++.+.++||||||+.... ..+..++..+..... ...|++++||||.........
T Consensus 174 ~~~ls~fs~iv~DE~Hra~kn---~~Y~~Vmr~~l~~k~----~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ss 246 (746)
T KOG0354|consen 174 HDELSDFSLIVFDECHRTSKN---HPYNNIMREYLDLKN----QGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESS 246 (746)
T ss_pred ccccceEEEEEEccccccccc---ccHHHHHHHHHHhhh----ccccEEEEecCCCccHHHHHHHHHhhheecccchhhh
Confidence 43 589999999999987653 234444433222111 122999999999754333211
Q ss_pred ----------------------------------HHhc-----Cceeeec----------cccccccccce---e-----
Q 047490 150 ----------------------------------EECQ-----GIAHLRT----------STLHKKIASAR---H----- 172 (323)
Q Consensus 150 ----------------------------------~~~~-----~~~~~~~----------~~~~~~~~~~~---~----- 172 (323)
.++. ....+.. .......++.. +
T Consensus 247 i~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~ 326 (746)
T KOG0354|consen 247 IKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYA 326 (746)
T ss_pred hhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHH
Confidence 0000 0000000 00000000000 0
Q ss_pred ----------------------------------------------------------eE-EeccCChhHHHHHHHHhcc
Q 047490 173 ----------------------------------------------------------DF-IKLSGSENKLEALLQVLEP 193 (323)
Q Consensus 173 ----------------------------------------------------------~~-~~~~~~~~k~~~l~~~l~~ 193 (323)
+. ...+....|++.+.+.+.+
T Consensus 327 ~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e 406 (746)
T KOG0354|consen 327 LHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVE 406 (746)
T ss_pred HHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHH
Confidence 00 0001124467777776655
Q ss_pred CCC--CCCeEEEEecCcccHHHHHHHHhh-C--CCeeEEec--------CCCCHHHHHHHHHhccccCCCCCEEEEeccc
Q 047490 194 SLS--KGNKVMVFCNTLNSSRAVDHFLNE-N--QISTVNYH--------GEVPAQERVENLNKFKNEDGDCPTLVCTDLA 260 (323)
Q Consensus 194 ~~~--~~~~~lvf~~~~~~~~~l~~~l~~-~--~~~~~~~~--------~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~ 260 (323)
+.+ +..++||||.++..|+.+..+|.. . +.....+- .+|++.++.+++++|+. |+.++||||+++
T Consensus 407 ~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~--G~~NvLVATSV~ 484 (746)
T KOG0354|consen 407 QFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRD--GEINVLVATSVA 484 (746)
T ss_pred HhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhC--CCccEEEEecch
Confidence 443 446999999999999999999873 2 22333322 37999999999999999 999999999999
Q ss_pred ccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHH
Q 047490 261 ARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317 (323)
Q Consensus 261 ~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~ 317 (323)
++|+|+ .|+.||-||...|+..++||+|| ||. +.|+|+.+.+..+....++....
T Consensus 485 EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~~~~~~~E~~~~~ 540 (746)
T KOG0354|consen 485 EEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGSEVIEFERNNLA 540 (746)
T ss_pred hccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcchhHHHHHHHHHh
Confidence 999999 99999999999999999999999 888 68999999985555555544443
|
|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-27 Score=218.07 Aligned_cols=285 Identities=16% Similarity=0.174 Sum_probs=198.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccC---CccccccCCCCCEEEeChHHH-HHHHHc------CC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRL---RPQEDSLNNPIDMVVGTPGRI-LQHIED------GN 86 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~Iii~Tp~~l-~~~~~~------~~ 86 (323)
++.++|++|+++|+.|+++++..+....|+++...+++... .........+++|+++||+.| .+++.. +.
T Consensus 111 g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~ 190 (762)
T TIGR03714 111 GKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEG 190 (762)
T ss_pred CCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhh
Confidence 55799999999999999999999999999999888776322 111223334689999999999 565543 23
Q ss_pred CCCCCCcEEeecchhhhhcCC----------------ChhhHHHHHhhhccc---------------------------c
Q 047490 87 MVYGDIKYLVLDEADTMFDRG----------------FGPDIRKFLVPLKNR---------------------------A 123 (323)
Q Consensus 87 ~~~~~~~~vIiDE~h~~~~~~----------------~~~~~~~i~~~~~~~---------------------------~ 123 (323)
..++.+.++|+||||.++-.+ .......++..+... .
T Consensus 191 ~~~r~l~~~IVDEaDsILiDeartpliisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~ 270 (762)
T TIGR03714 191 KFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKI 270 (762)
T ss_pred cccccCcEEEEecHhhHhhccCcCCeeeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCC
Confidence 457789999999999974211 000111111111110 0
Q ss_pred CCCC-CC--------------------C----------------------------------------------------
Q 047490 124 SKPN-GQ--------------------G---------------------------------------------------- 130 (323)
Q Consensus 124 ~~~~-~~--------------------~---------------------------------------------------- 130 (323)
.+.. .. +
T Consensus 271 ~~l~~~~~~~~~~~i~~al~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~I 350 (762)
T TIGR03714 271 DNLYSEEYFELVRHINLALRAHYLFKRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASI 350 (762)
T ss_pred CccCChhhHHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeee
Confidence 0000 00 0
Q ss_pred ---------ceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeE
Q 047490 131 ---------FQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKV 201 (323)
Q Consensus 131 ---------~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~ 201 (323)
.++.+||+|...+..++.+-+......++............ .+. .....|..++.+.+.+....+.++
T Consensus 351 t~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY~l~v~~IPt~kp~~r~d~~d--~i~-~~~~~K~~ai~~~i~~~~~~~~pv 427 (762)
T TIGR03714 351 TYQNLFKMFNKLSGMTGTGKVAEKEFIETYSLSVVKIPTNKPIIRIDYPD--KIY-ATLPEKLMATLEDVKEYHETGQPV 427 (762)
T ss_pred eHHHHHhhCchhcccCCCChhHHHHHHHHhCCCEEEcCCCCCeeeeeCCC--eEE-ECHHHHHHHHHHHHHHHhhCCCCE
Confidence 26777777765545554433322222222211111111111 122 224668899998887765678999
Q ss_pred EEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCCC----------CCEE
Q 047490 202 MVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLD----------VDHV 271 (323)
Q Consensus 202 lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~~----------~~~v 271 (323)
||||++.+.++.+...|.+.++++..+||++...++..+.+.++. | .|+|||+.+++|+|++ +.+|
T Consensus 428 LIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~--g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vI 503 (762)
T TIGR03714 428 LLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQK--G--AVTVATSMAGRGTDIKLGKGVAELGGLAVI 503 (762)
T ss_pred EEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCC--C--eEEEEccccccccCCCCCccccccCCeEEE
Confidence 999999999999999999999999999999999888888888877 7 4999999999999984 5678
Q ss_pred EEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHH
Q 047490 272 IMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309 (323)
Q Consensus 272 i~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 309 (323)
+++++|....+ .||.||+||.|.+|.++.+++..|.-
T Consensus 504 it~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~eD~l 540 (762)
T TIGR03714 504 GTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLEDDL 540 (762)
T ss_pred EecCCCCcHHH-HHhhhcccCCCCceeEEEEEccchhh
Confidence 88898876655 99999999999999999999976553
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. |
| >KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.9e-29 Score=205.45 Aligned_cols=280 Identities=21% Similarity=0.258 Sum_probs=203.9
Q ss_pred cEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc------CCCCCEEEeChHHHHHH----HHcCCCC
Q 047490 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL------NNPIDMVVGTPGRILQH----IEDGNMV 88 (323)
Q Consensus 19 ~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~Iii~Tp~~l~~~----~~~~~~~ 88 (323)
..||+.|..+|+.++.+.+..+- +.+..+.+.....++.+.+ .....+++.|||..... +.+....
T Consensus 63 ITIV~SPLiALIkDQiDHL~~LK----Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~ 138 (641)
T KOG0352|consen 63 ITIVISPLIALIKDQIDHLKRLK----VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLAN 138 (641)
T ss_pred eEEEehHHHHHHHHHHHHHHhcC----CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhh
Confidence 89999999999999988887763 3444444444444433322 33457999999876322 1122233
Q ss_pred CCCCcEEeecchhhhhcCC--ChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHh--cCceeeeccccc
Q 047490 89 YGDIKYLVLDEADTMFDRG--FGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEEC--QGIAHLRTSTLH 164 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~--~~~~~~~~~~~~ 164 (323)
...++|+++||||+..+|| |++.+..+-. ++..+ ..++.+++|||..+.+.+.+-..+ ..++.+...+.
T Consensus 139 r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~-LRS~~-----~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~- 211 (641)
T KOG0352|consen 139 RDVLRYIVVDEAHCVSQWGHDFRPDYLTLGS-LRSVC-----PGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPT- 211 (641)
T ss_pred hceeeeEEechhhhHhhhccccCcchhhhhh-HHhhC-----CCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcc-
Confidence 4568899999999999998 7777665532 33332 245899999999998888765443 33332221111
Q ss_pred cccccceeeEEecc---CChhHHHHHHHHhccCCC-----------CCCeEEEEecCcccHHHHHHHHhhCCCeeEEecC
Q 047490 165 KKIASARHDFIKLS---GSENKLEALLQVLEPSLS-----------KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHG 230 (323)
Q Consensus 165 ~~~~~~~~~~~~~~---~~~~k~~~l~~~l~~~~~-----------~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~ 230 (323)
...+.|+++. .-.+-...|.+.....+. ..+-.||||.+++.++.++-.|...|++...||.
T Consensus 212 ----FR~NLFYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHA 287 (641)
T KOG0352|consen 212 ----FRDNLFYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHA 287 (641)
T ss_pred ----hhhhhhHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhc
Confidence 1111222211 112233444443332221 1245799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHH
Q 047490 231 EVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309 (323)
Q Consensus 231 ~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 309 (323)
++...+|-++.++|.+ ++..|+++|..+++|+|- ++..||+++.|.|...|.|-.||+||.|..+.|-+++...|..
T Consensus 288 GLK~~ERTeVQe~WM~--~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~ 365 (641)
T KOG0352|consen 288 GLKKKERTEVQEKWMN--NEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKN 365 (641)
T ss_pred ccccchhHHHHHHHhc--CCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchH
Confidence 9999999999999999 999999999999999999 9999999999999999999999999999999999999998887
Q ss_pred HHHHHH
Q 047490 310 LADRIE 315 (323)
Q Consensus 310 ~~~~i~ 315 (323)
.++-+.
T Consensus 366 ~i~FLi 371 (641)
T KOG0352|consen 366 ALNFLV 371 (641)
T ss_pred HHHHHH
Confidence 665543
|
|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-28 Score=237.84 Aligned_cols=278 Identities=15% Similarity=0.206 Sum_probs=196.2
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhcccc--ceeEEEeecCccCCcccc---cc-CCCCCEEEeChHHHHHHHHcCCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHA--RFRSTMVSGGGRLRPQED---SL-NNPIDMVVGTPGRILQHIEDGNMVY 89 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~-~~~~~Iii~Tp~~l~~~~~~~~~~~ 89 (323)
++.+++||+||++|+.|+.+.++.+.... ++++..++|+.....+.. .+ .+.++|+|+||+.+.+.+... ..
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~ 198 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KH 198 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hh
Confidence 46799999999999999999999988764 456677788876554432 22 345899999999888766542 22
Q ss_pred CCCcEEeecchhhhhcC-----------CChhhHHH----HHhh---------------hccccCCCCCCCceEEEEEee
Q 047490 90 GDIKYLVLDEADTMFDR-----------GFGPDIRK----FLVP---------------LKNRASKPNGQGFQTVLVSAT 139 (323)
Q Consensus 90 ~~~~~vIiDE~h~~~~~-----------~~~~~~~~----i~~~---------------~~~~~~~~~~~~~~~i~~sat 139 (323)
.+++++|+||||+++++ +|.+.+.. ++.. +..........+-..+++|||
T Consensus 199 ~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT 278 (1638)
T PRK14701 199 LKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASAT 278 (1638)
T ss_pred CCCCEEEEECceeccccccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecC
Confidence 67999999999999863 67776654 3210 110000001111136779999
Q ss_pred cchhhHHHHHHHhcCceeeeccccccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCccc---HHHHHH
Q 047490 140 MTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNS---SRAVDH 216 (323)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~---~~~l~~ 216 (323)
.++... ....+..+..+..........++.+.+.... ...+ ..+.+++... +.+.||||++.+. |+.+++
T Consensus 279 ~~~r~~--~~~l~~~~l~f~v~~~~~~lr~i~~~yi~~~-~~~k-~~L~~ll~~~---g~~gIVF~~t~~~~e~ae~la~ 351 (1638)
T PRK14701 279 GKAKGD--RVKLYRELLGFEVGSGRSALRNIVDVYLNPE-KIIK-EHVRELLKKL---GKGGLIFVPIDEGAEKAEEIEK 351 (1638)
T ss_pred CCchhH--HHHHhhcCeEEEecCCCCCCCCcEEEEEECC-HHHH-HHHHHHHHhC---CCCeEEEEeccccchHHHHHHH
Confidence 985311 1122233333444444445556666665443 2323 5677777653 4588999999886 489999
Q ss_pred HHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEec----ccccccCC-C-CCEEEEcCCCC---Cchhhhhhh
Q 047490 217 FLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD----LAARGLDL-D-VDHVIMFDFPL---NSIDYLHRT 287 (323)
Q Consensus 217 ~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~----~~~~Gid~-~-~~~vi~~~~p~---s~~~~~Q~~ 287 (323)
.|.+.|+.+..+||+ |...+++|++ |+++|||||. .+.+|+|+ + +.+|||||+|+ |...|.|..
T Consensus 352 ~L~~~Gi~a~~~h~~-----R~~~l~~F~~--G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~ 424 (1638)
T PRK14701 352 YLLEDGFKIELVSAK-----NKKGFDLFEE--GEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTI 424 (1638)
T ss_pred HHHHCCCeEEEecch-----HHHHHHHHHc--CCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccch
Confidence 999999999999995 8899999999 9999999994 78999999 7 99999999999 777676665
Q ss_pred -------------cccccCCCcceEEEEeeCCcHH
Q 047490 288 -------------GRTARMGAKGKVTSLVAKKDVL 309 (323)
Q Consensus 288 -------------GR~~R~~~~g~~~~~~~~~~~~ 309 (323)
||+||.|..+.++..+...+..
T Consensus 425 ~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~ 459 (1638)
T PRK14701 425 YRILGLLSEILKIEEELKEGIPIEGVLDVFPEDVE 459 (1638)
T ss_pred hhhhcchHHHHHhhhhcccCCcchhHHHhHHHHHH
Confidence 9999999877666444433433
|
|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-27 Score=202.80 Aligned_cols=255 Identities=14% Similarity=0.146 Sum_probs=165.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccc----cceeEEEeecCccCC--cc------------------ccccCCCCCEEE
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHH----ARFRSTMVSGGGRLR--PQ------------------EDSLNNPIDMVV 72 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~------------------~~~~~~~~~Iii 72 (323)
+.++++++|+++|++|+.+.++++... .+..+..+.|+...+ .. .....+.+.|++
T Consensus 39 ~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~ill 118 (357)
T TIGR03158 39 ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILL 118 (357)
T ss_pred CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEE
Confidence 457899999999999999999998743 245566666652211 00 000123578999
Q ss_pred eChHHHHHHHHcCC--------CCCCCCcEEeecchhhhhcCCChh-----hHHHHHhhhccccCCCCCCCceEEEEEee
Q 047490 73 GTPGRILQHIEDGN--------MVYGDIKYLVLDEADTMFDRGFGP-----DIRKFLVPLKNRASKPNGQGFQTVLVSAT 139 (323)
Q Consensus 73 ~Tp~~l~~~~~~~~--------~~~~~~~~vIiDE~h~~~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~i~~sat 139 (323)
|||+.|..++.... .++.+++++|+||+|.+..+.... ....++..... ..+++++|||
T Consensus 119 T~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~--------~~~~i~lSAT 190 (357)
T TIGR03158 119 TNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFEC--------RRKFVFLSAT 190 (357)
T ss_pred ecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecccccCcccchhhhhhhHHHHHHHhhhc--------CCcEEEEecC
Confidence 99999987665421 125789999999999976533211 11222221111 2389999999
Q ss_pred cchhhHHHHHHH--hcCceee-ecc--c---------------cccccccceeeEEeccCChhHH---HHHHHHhccCC-
Q 047490 140 MTKAVQKLVDEE--CQGIAHL-RTS--T---------------LHKKIASARHDFIKLSGSENKL---EALLQVLEPSL- 195 (323)
Q Consensus 140 ~~~~~~~~~~~~--~~~~~~~-~~~--~---------------~~~~~~~~~~~~~~~~~~~~k~---~~l~~~l~~~~- 195 (323)
+++...+.+... ...+... ... . .....+.+.+.+.. ....+. ..+.+.+.+..
T Consensus 191 ~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~l~~l~~~i~~~~~ 268 (357)
T TIGR03158 191 PDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIP--APDFKEEELSELAEEVIERFR 268 (357)
T ss_pred CCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccceeccceEEEEEe--CCchhHHHHHHHHHHHHHHHh
Confidence 998877776654 2211111 111 0 00011223333333 122232 33333333222
Q ss_pred -CCCCeEEEEecCcccHHHHHHHHhhCC--CeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCCCCCEEE
Q 047490 196 -SKGNKVMVFCNTLNSSRAVDHFLNENQ--ISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLDVDHVI 272 (323)
Q Consensus 196 -~~~~~~lvf~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~~~~~vi 272 (323)
..++++||||++.+.++.+++.|++.+ ..+..+||.+++.+|... ++..|||||+++++|+|++.+.||
T Consensus 269 ~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~--------~~~~iLVaTdv~~rGiDi~~~~vi 340 (357)
T TIGR03158 269 QLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA--------MQFDILLGTSTVDVGVDFKRDWLI 340 (357)
T ss_pred ccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh--------ccCCEEEEecHHhcccCCCCceEE
Confidence 256799999999999999999999764 577889999998887643 456799999999999999444666
Q ss_pred EcCCCCCchhhhhhhcccc
Q 047490 273 MFDFPLNSIDYLHRTGRTA 291 (323)
Q Consensus 273 ~~~~p~s~~~~~Q~~GR~~ 291 (323)
++ |.+...|.||+||+|
T Consensus 341 -~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 -FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred -EC-CCCHHHHhhhcccCC
Confidence 45 889999999999987
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.8e-27 Score=215.96 Aligned_cols=263 Identities=21% Similarity=0.296 Sum_probs=211.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCCCCCC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMVYGDI 92 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~~~~~ 92 (323)
+++|.|||||.-|++|.++.|++-+...++++..++--...+++...+ .+..||+|+| +-+-+....+.++
T Consensus 643 GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGT-----HrLL~kdv~FkdL 717 (1139)
T COG1197 643 GKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGT-----HRLLSKDVKFKDL 717 (1139)
T ss_pred CCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEec-----hHhhCCCcEEecC
Confidence 689999999999999999999999999999998887766665554433 4568999999 4455667889999
Q ss_pred cEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccccccccccee
Q 047490 93 KYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARH 172 (323)
Q Consensus 93 ~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (323)
.++|+||-|+ |+.....-+..++. ++.++-+||||.|.+-.+.-......+.+..++... -..+
T Consensus 718 GLlIIDEEqR-----FGVk~KEkLK~Lr~--------~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R---~pV~ 781 (1139)
T COG1197 718 GLLIIDEEQR-----FGVKHKEKLKELRA--------NVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDR---LPVK 781 (1139)
T ss_pred CeEEEechhh-----cCccHHHHHHHHhc--------cCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCC---cceE
Confidence 9999999996 66666776766664 458999999998888777766666655554443322 2233
Q ss_pred eEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC--CCeeEEecCCCCHHHHHHHHHhccccCCC
Q 047490 173 DFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN--QISTVNYHGEVPAQERVENLNKFKNEDGD 250 (323)
Q Consensus 173 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~g~ 250 (323)
.|+...+..--.++++.-+ ..|+++--..|..+..+.+++.|++. ..++.+.||.|++.+-++++.+|.+ |+
T Consensus 782 T~V~~~d~~~ireAI~REl----~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~--g~ 855 (1139)
T COG1197 782 TFVSEYDDLLIREAILREL----LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYN--GE 855 (1139)
T ss_pred EEEecCChHHHHHHHHHHH----hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHc--CC
Confidence 4443333333334444444 47899999999999999999999986 6688999999999999999999999 99
Q ss_pred CCEEEEecccccccCC-CCCEEEEcCCCC-CchhhhhhhcccccCCCcceEEEEeeCC
Q 047490 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPL-NSIDYLHRTGRTARMGAKGKVTSLVAKK 306 (323)
Q Consensus 251 ~~ilv~t~~~~~Gid~-~~~~vi~~~~p~-s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 306 (323)
.+|||||.+.+.|+|+ +++++|+.+... -.++..|..||+||..+.++||.++.+.
T Consensus 856 ~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 856 YDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred CCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCc
Confidence 9999999999999999 999999877654 6888899999999999999999999953
|
|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=219.81 Aligned_cols=263 Identities=15% Similarity=0.209 Sum_probs=175.4
Q ss_pred cEEEEcC----CHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcE
Q 047490 19 RAVVLCP----TRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKY 94 (323)
Q Consensus 19 ~~lvl~P----~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~ 94 (323)
.+++.-| +++++.|+++++..-. |-.++.-. .... ....+++|+|+||+.|++.+... ..++++++
T Consensus 120 ~I~~TQPRRlAArsLA~RVA~El~~~l---G~~VGY~v---rf~~---~~s~~t~I~v~TpG~LL~~l~~d-~~Ls~~~~ 189 (1294)
T PRK11131 120 LIGHTQPRRLAARTVANRIAEELETEL---GGCVGYKV---RFND---QVSDNTMVKLMTDGILLAEIQQD-RLLMQYDT 189 (1294)
T ss_pred ceeeCCCcHHHHHHHHHHHHHHHhhhh---cceeceee---cCcc---ccCCCCCEEEEChHHHHHHHhcC-CccccCcE
Confidence 4445557 4678888888776522 11222111 1111 12345799999999999988764 45899999
Q ss_pred Eeecchhh-hhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceee
Q 047490 95 LVLDEADT-MFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHD 173 (323)
Q Consensus 95 vIiDE~h~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (323)
||+||+|. +++.++... .+..+... ..+.|+|+||||++.. .+...+...+ .+..... ...+...
T Consensus 190 IIIDEAHERsLn~DfLLg---~Lk~lL~~-----rpdlKvILmSATid~e--~fs~~F~~ap-vI~V~Gr---~~pVei~ 255 (1294)
T PRK11131 190 IIIDEAHERSLNIDFILG---YLKELLPR-----RPDLKVIITSATIDPE--RFSRHFNNAP-IIEVSGR---TYPVEVR 255 (1294)
T ss_pred EEecCccccccccchHHH---HHHHhhhc-----CCCceEEEeeCCCCHH--HHHHHcCCCC-EEEEcCc---cccceEE
Confidence 99999994 666554321 12222111 1245999999999743 3333332222 2222111 1123334
Q ss_pred EEeccCC-----hhHHHHHHHHhccC-CCCCCeEEEEecCcccHHHHHHHHhhCCCe---eEEecCCCCHHHHHHHHHhc
Q 047490 174 FIKLSGS-----ENKLEALLQVLEPS-LSKGNKVMVFCNTLNSSRAVDHFLNENQIS---TVNYHGEVPAQERVENLNKF 244 (323)
Q Consensus 174 ~~~~~~~-----~~k~~~l~~~l~~~-~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~---~~~~~~~~~~~~r~~~~~~f 244 (323)
|...... .+....+++.+... ...++.+|||+++..+++.+++.|+..+.. +..+||+++.++|..+++.
T Consensus 256 y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~- 334 (1294)
T PRK11131 256 YRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS- 334 (1294)
T ss_pred EeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc-
Confidence 4333221 23344444443321 134578999999999999999999887654 6789999999999988775
Q ss_pred cccCCCCCEEEEecccccccCC-CCCEEEEcCC---------------C---CCchhhhhhhcccccCCCcceEEEEeeC
Q 047490 245 KNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDF---------------P---LNSIDYLHRTGRTARMGAKGKVTSLVAK 305 (323)
Q Consensus 245 ~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~---------------p---~s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 305 (323)
. |..+|+|||+++++|+|+ ++++||++|. | .|...|.||+||+||. .+|.|+.+++.
T Consensus 335 -~--g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte 410 (1294)
T PRK11131 335 -H--SGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSE 410 (1294)
T ss_pred -c--CCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCH
Confidence 3 678899999999999999 9999999863 3 4668899999999999 79999999998
Q ss_pred CcHHH
Q 047490 306 KDVLL 310 (323)
Q Consensus 306 ~~~~~ 310 (323)
.+...
T Consensus 411 ~d~~~ 415 (1294)
T PRK11131 411 DDFLS 415 (1294)
T ss_pred HHHHh
Confidence 76543
|
|
| >KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=208.08 Aligned_cols=276 Identities=18% Similarity=0.230 Sum_probs=204.6
Q ss_pred cccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCC
Q 047490 11 VLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYG 90 (323)
Q Consensus 11 ~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~ 90 (323)
.++..+..+++|-.|-++|-+|..+.|++-+.+.| .++|+.. ++..+.++|+|.|.|.+++.++.-..+
T Consensus 334 alaq~h~TR~iYTSPIKALSNQKfRDFk~tF~Dvg----LlTGDvq-------inPeAsCLIMTTEILRsMLYrgadliR 402 (1248)
T KOG0947|consen 334 ALAQKHMTRTIYTSPIKALSNQKFRDFKETFGDVG----LLTGDVQ-------INPEASCLIMTTEILRSMLYRGADLIR 402 (1248)
T ss_pred HHHHhhccceEecchhhhhccchHHHHHHhccccc----eeeccee-------eCCCcceEeehHHHHHHHHhcccchhh
Confidence 34566688999999999999999999999887543 6777743 333478999999999999999888899
Q ss_pred CCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhh--HHHHHHHhcCceeeecc-cccccc
Q 047490 91 DIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAV--QKLVDEECQGIAHLRTS-TLHKKI 167 (323)
Q Consensus 91 ~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~ 167 (323)
++.+|||||+|.+.+.+++.-.+.++.+++.. +++|++|||.|+.. ..|+.+.-......... ..+.+
T Consensus 403 DvE~VIFDEVHYiND~eRGvVWEEViIMlP~H--------V~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVP- 473 (1248)
T KOG0947|consen 403 DVEFVIFDEVHYINDVERGVVWEEVIIMLPRH--------VNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVP- 473 (1248)
T ss_pred ccceEEEeeeeecccccccccceeeeeecccc--------ceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccc-
Confidence 99999999999999999999999999999875 49999999998754 34444332221111110 11110
Q ss_pred ccceeeEEecc----------------------------------------------------------------CC-hh
Q 047490 168 ASARHDFIKLS----------------------------------------------------------------GS-EN 182 (323)
Q Consensus 168 ~~~~~~~~~~~----------------------------------------------------------------~~-~~ 182 (323)
..+++ +.. .. ..
T Consensus 474 --LEh~l-~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr 550 (1248)
T KOG0947|consen 474 --LEHYL-YTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRR 550 (1248)
T ss_pred --eEEEE-EeccceehhhcccchhhhhcchhhhhhhcccccccccccccccccccccccCCcCCCCCCCccccccccccc
Confidence 01100 000 00 00
Q ss_pred H---HHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC--------------------------------------
Q 047490 183 K---LEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN-------------------------------------- 221 (323)
Q Consensus 183 k---~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~-------------------------------------- 221 (323)
+ .-.++..+.. ..--|++|||-+++-|++.++.|...
T Consensus 551 ~~~~~l~lin~L~k--~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~l 628 (1248)
T KOG0947|consen 551 KQPTWLDLINHLRK--KNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSL 628 (1248)
T ss_pred ccchHHHHHHHHhh--cccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHH
Confidence 1 2222233322 13358999999999999999998651
Q ss_pred -CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCCCCCEEEEcCCCC---------Cchhhhhhhcccc
Q 047490 222 -QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPL---------NSIDYLHRTGRTA 291 (323)
Q Consensus 222 -~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~~~~~vi~~~~p~---------s~~~~~Q~~GR~~ 291 (323)
..+++++||++-+--++-+...|.. |-++||+||.++++|+|+++.+||+.+..+ ++.+|.|++||||
T Consensus 629 l~RGiaVHH~GlLPivKE~VE~LFqr--GlVKVLFATETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAG 706 (1248)
T KOG0947|consen 629 LLRGIAVHHGGLLPIVKEVVELLFQR--GLVKVLFATETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAG 706 (1248)
T ss_pred HhhcchhhcccchHHHHHHHHHHHhc--CceEEEeehhhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhcccc
Confidence 2356789999999999999999999 999999999999999999999999987653 7889999999999
Q ss_pred cCC--CcceEEEEeeCC--cHHHHHH
Q 047490 292 RMG--AKGKVTSLVAKK--DVLLADR 313 (323)
Q Consensus 292 R~~--~~g~~~~~~~~~--~~~~~~~ 313 (323)
|+| ..|.++++.... +.+.+++
T Consensus 707 RRGlD~tGTVii~~~~~vp~~a~l~~ 732 (1248)
T KOG0947|consen 707 RRGLDETGTVIIMCKDSVPSAATLKR 732 (1248)
T ss_pred ccccCcCceEEEEecCCCCCHHHHhh
Confidence 999 578888887754 4444433
|
|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=201.14 Aligned_cols=275 Identities=17% Similarity=0.185 Sum_probs=183.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccc----cCCCCCEEEeChHHHHHHHHcCCCCCCCC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS----LNNPIDMVVGTPGRILQHIEDGNMVYGDI 92 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~ 92 (323)
+.++|||+|+.+|+.|+.+.+++.+ +.++..++++....+.... ..+..+|+|+|+..++ ..++++
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-------~p~~~l 94 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-------LPFKNL 94 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-------CcccCC
Confidence 6689999999999999999999876 3467788887655443222 2345799999998664 347789
Q ss_pred cEEeecchhhhhcCC---ChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccccccccc
Q 047490 93 KYLVLDEADTMFDRG---FGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIAS 169 (323)
Q Consensus 93 ~~vIiDE~h~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (323)
++||+||.|....++ ..-+.+.+....... .+.+++++||||+.+........ ................
T Consensus 95 ~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~------~~~~vil~SATPsles~~~~~~g--~~~~~~l~~r~~~~~~ 166 (505)
T TIGR00595 95 GLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKK------FNCPVVLGSATPSLESYHNAKQK--AYRLLVLTRRVSGRKP 166 (505)
T ss_pred CEEEEECCCccccccccCCCCcHHHHHHHHHHh------cCCCEEEEeCCCCHHHHHHHhcC--CeEEeechhhhcCCCC
Confidence 999999999865332 111223332222111 13489999999886655444321 1111111111111111
Q ss_pred ceeeEEeccCCh---hHHHHHHHHhccCCCCCCeEEEEecCccc------------------------------------
Q 047490 170 ARHDFIKLSGSE---NKLEALLQVLEPSLSKGNKVMVFCNTLNS------------------------------------ 210 (323)
Q Consensus 170 ~~~~~~~~~~~~---~k~~~l~~~l~~~~~~~~~~lvf~~~~~~------------------------------------ 210 (323)
....+....... .--..+++.+.+.++.++++|||+|++..
T Consensus 167 p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~C 246 (505)
T TIGR00595 167 PEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYC 246 (505)
T ss_pred CeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCC
Confidence 112222222111 12245666666666788899999777543
Q ss_pred ------------------------HHHHHHHHhhC--CCeeEEecCCCCHHHH--HHHHHhccccCCCCCEEEEeccccc
Q 047490 211 ------------------------SRAVDHFLNEN--QISTVNYHGEVPAQER--VENLNKFKNEDGDCPTLVCTDLAAR 262 (323)
Q Consensus 211 ------------------------~~~l~~~l~~~--~~~~~~~~~~~~~~~r--~~~~~~f~~~~g~~~ilv~t~~~~~ 262 (323)
.+.+.+.|++. +.++..+|++++...+ +.++++|++ |+.+|||+|+.++.
T Consensus 247 g~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~--g~~~ILVgT~~i~k 324 (505)
T TIGR00595 247 GYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFAN--GKADILIGTQMIAK 324 (505)
T ss_pred cCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhc--CCCCEEEeCccccc
Confidence 46777777765 6688899999887665 899999999 99999999999999
Q ss_pred ccCC-CCCEEEEcCCCC------------CchhhhhhhcccccCCCcceEEEEeeCCcHHHH
Q 047490 263 GLDL-DVDHVIMFDFPL------------NSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311 (323)
Q Consensus 263 Gid~-~~~~vi~~~~p~------------s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~ 311 (323)
|+|+ +++.|++.+... ....|.|++||+||.++.|.+++.....+...+
T Consensus 325 G~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~~~~~ 386 (505)
T TIGR00595 325 GHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPNHPAI 386 (505)
T ss_pred CCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCCCHHH
Confidence 9999 999886554331 235689999999999999999877765554433
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.5e-27 Score=206.04 Aligned_cols=273 Identities=18% Similarity=0.243 Sum_probs=202.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEe
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLV 96 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vI 96 (323)
+.|+||-.|-++|-+|.++++..-++ .++..+|+.... .++..+|+|.+.|..++.+++-.+..+.+||
T Consensus 172 kQRVIYTSPIKALSNQKYREl~~EF~----DVGLMTGDVTIn-------P~ASCLVMTTEILRsMLYRGSEvmrEVaWVI 240 (1041)
T KOG0948|consen 172 KQRVIYTSPIKALSNQKYRELLEEFK----DVGLMTGDVTIN-------PDASCLVMTTEILRSMLYRGSEVMREVAWVI 240 (1041)
T ss_pred cCeEEeeChhhhhcchhHHHHHHHhc----ccceeecceeeC-------CCCceeeeHHHHHHHHHhccchHhheeeeEE
Confidence 67999999999999999999999887 466677775433 3467899999999999999988899999999
Q ss_pred ecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhh--HHHHHHHhcCceeeeccccccccccceeeE
Q 047490 97 LDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAV--QKLVDEECQGIAHLRTSTLHKKIASARHDF 174 (323)
Q Consensus 97 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (323)
+||+|.|-+.+.+.-.+..+-.++. +++++++|||.|+.. .+|+-..-..++++....... ... ++|
T Consensus 241 FDEIHYMRDkERGVVWEETIIllP~--------~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRP--TPL-QHy 309 (1041)
T KOG0948|consen 241 FDEIHYMRDKERGVVWEETIILLPD--------NVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRP--TPL-QHY 309 (1041)
T ss_pred eeeehhccccccceeeeeeEEeccc--------cceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCC--Ccc-eee
Confidence 9999999998887777766666654 459999999998765 445555555555543322211 112 222
Q ss_pred EeccC--------------ChhHHHHHHHHhccCC------------------------------------CCCCeEEEE
Q 047490 175 IKLSG--------------SENKLEALLQVLEPSL------------------------------------SKGNKVMVF 204 (323)
Q Consensus 175 ~~~~~--------------~~~k~~~l~~~l~~~~------------------------------------~~~~~~lvf 204 (323)
+...+ .++.....+..+.... .+..|+|||
T Consensus 310 ifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvF 389 (1041)
T KOG0948|consen 310 IFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVF 389 (1041)
T ss_pred eecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEE
Confidence 11110 1122222222221100 123489999
Q ss_pred ecCcccHHHHHHHHhhC---------------------------------------CCeeEEecCCCCHHHHHHHHHhcc
Q 047490 205 CNTLNSSRAVDHFLNEN---------------------------------------QISTVNYHGEVPAQERVENLNKFK 245 (323)
Q Consensus 205 ~~~~~~~~~l~~~l~~~---------------------------------------~~~~~~~~~~~~~~~r~~~~~~f~ 245 (323)
+-++++|+.++-.+... ..+++++|+|+-+-.++-+.-.|+
T Consensus 390 SFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFq 469 (1041)
T KOG0948|consen 390 SFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQ 469 (1041)
T ss_pred EecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHh
Confidence 99999999998877541 235678999999999999999999
Q ss_pred ccCCCCCEEEEecccccccCCCCCEEEEcCCCC---------CchhhhhhhcccccCCC--cceEEEEeeCC-cHHHHHH
Q 047490 246 NEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPL---------NSIDYLHRTGRTARMGA--KGKVTSLVAKK-DVLLADR 313 (323)
Q Consensus 246 ~~~g~~~ilv~t~~~~~Gid~~~~~vi~~~~p~---------s~~~~~Q~~GR~~R~~~--~g~~~~~~~~~-~~~~~~~ 313 (323)
+ |-+++|+||.++..|+|+++..|++....+ |.-+|+|+.|||||+|. .|-||++++.. +....+.
T Consensus 470 E--GLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~ 547 (1041)
T KOG0948|consen 470 E--GLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKD 547 (1041)
T ss_pred c--cHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHH
Confidence 9 999999999999999999999999976532 88899999999999994 68888888754 4444443
|
|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-25 Score=214.36 Aligned_cols=243 Identities=18% Similarity=0.316 Sum_probs=170.2
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEE---EeecCccCCcccc---cc-CCCCCEEEeChHHHHHHHHcCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRST---MVSGGGRLRPQED---SL-NNPIDMVVGTPGRILQHIEDGNMV 88 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---~~-~~~~~Iii~Tp~~l~~~~~~~~~~ 88 (323)
++++++||+||++|+.|+.+.++++....++.+. .++|+.....+.. .+ .++++|+|+||+++.+.+....
T Consensus 120 ~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~-- 197 (1171)
T TIGR01054 120 KGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG-- 197 (1171)
T ss_pred cCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--
Confidence 3789999999999999999999999877665543 4567765443322 22 3458999999999988766522
Q ss_pred CCCCcEEeecchhhhhc-----------CCChhh-HHHHHhhhc------------------cccCCCCCCCceEEEEEe
Q 047490 89 YGDIKYLVLDEADTMFD-----------RGFGPD-IRKFLVPLK------------------NRASKPNGQGFQTVLVSA 138 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~-----------~~~~~~-~~~i~~~~~------------------~~~~~~~~~~~~~i~~sa 138 (323)
. +++++|+||||++++ .||.+. +..++..++ ...+ .....+++++||
T Consensus 198 ~-~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~q~~li~~SA 274 (1171)
T TIGR01054 198 P-KFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIP--GKKRGCLIVSSA 274 (1171)
T ss_pred C-CCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhh--hccCcEEEEEeC
Confidence 2 899999999999987 356543 444432211 0000 000114677899
Q ss_pred ec-chhhHHHHHHHhcCceeeeccccccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCc---ccHHHH
Q 047490 139 TM-TKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTL---NSSRAV 214 (323)
Q Consensus 139 t~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~---~~~~~l 214 (323)
|. +......+ +.....+..........++.+.+..... +...+.+++... +.++||||++. +.|+.+
T Consensus 275 T~~p~~~~~~l---~r~ll~~~v~~~~~~~r~I~~~~~~~~~---~~~~L~~ll~~l---~~~~IVFv~t~~~~~~a~~l 345 (1171)
T TIGR01054 275 TGRPRGKRAKL---FRELLGFEVGGGSDTLRNVVDVYVEDED---LKETLLEIVKKL---GTGGIVYVSIDYGKEKAEEI 345 (1171)
T ss_pred CCCccccHHHH---cccccceEecCccccccceEEEEEeccc---HHHHHHHHHHHc---CCCEEEEEeccccHHHHHHH
Confidence 94 54443222 1222222223333344556666554332 245566666543 35789999999 999999
Q ss_pred HHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEe----cccccccCC-C-CCEEEEcCCCC
Q 047490 215 DHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT----DLAARGLDL-D-VDHVIMFDFPL 278 (323)
Q Consensus 215 ~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t----~~~~~Gid~-~-~~~vi~~~~p~ 278 (323)
++.|++.|+.+..+||+++ +.++++|++ |+++||||| +.+++|+|+ + +++||+||.|.
T Consensus 346 ~~~L~~~g~~a~~lhg~~~----~~~l~~Fr~--G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 346 AEFLENHGVKAVAYHATKP----KEDYEKFAE--GEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred HHHHHhCCceEEEEeCCCC----HHHHHHHHc--CCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 9999999999999999997 368999999 999999995 889999999 8 89999999996
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.7e-25 Score=201.80 Aligned_cols=285 Identities=14% Similarity=0.175 Sum_probs=206.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHH-HHHHHcCC-CCC-----
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI-LQHIEDGN-MVY----- 89 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l-~~~~~~~~-~~~----- 89 (323)
+..++|++||++||.|.++++..+....|+++..+.|+.....+.... .++|+|+||+.| ++++..+. ..+
T Consensus 123 G~~V~VvTpn~yLA~qd~e~m~~l~~~lGLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~ 200 (896)
T PRK13104 123 GRGVHIVTVNDYLAKRDSQWMKPIYEFLGLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQ 200 (896)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhc
Confidence 457999999999999999999999999999999999987765554433 479999999999 88888762 323
Q ss_pred CCCcEEeecchhhhhcCC----------------ChhhHHHHHhhhcccc------------------------------
Q 047490 90 GDIKYLVLDEADTMFDRG----------------FGPDIRKFLVPLKNRA------------------------------ 123 (323)
Q Consensus 90 ~~~~~vIiDE~h~~~~~~----------------~~~~~~~i~~~~~~~~------------------------------ 123 (323)
..+.++|+||+|.++=.+ ....+..++..+....
T Consensus 201 r~l~~~IvDEaDsiLIDeArtPLIISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~ 280 (896)
T PRK13104 201 RELNFAIVDEVDSILIDEARTPLIISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEEL 280 (896)
T ss_pred cccceEEeccHhhhhhhccCCceeeeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHH
Confidence 589999999999964100 0111111111111100
Q ss_pred ----------CCC-CCCC--------------------------------------------------------------
Q 047490 124 ----------SKP-NGQG-------------------------------------------------------------- 130 (323)
Q Consensus 124 ----------~~~-~~~~-------------------------------------------------------------- 130 (323)
... ...+
T Consensus 281 ~~~~~il~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i 360 (896)
T PRK13104 281 LTKAKLLDPGESLYHASNIMLMHHVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPI 360 (896)
T ss_pred HHhCCccCCcccccCchhhhHHHHHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCC
Confidence 000 0000
Q ss_pred -------------------ceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEeccCChhHHHHHHHHh
Q 047490 131 -------------------FQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL 191 (323)
Q Consensus 131 -------------------~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l 191 (323)
.++.+||+|...+..++.+-+......++.-.......... .+. .....|..++.+.+
T Consensus 361 ~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d--~v~-~t~~~k~~av~~~i 437 (896)
T PRK13104 361 QNENQTLASITFQNFFRMYNKLSGMTGTADTEAYEFQQIYNLEVVVIPTNRSMIRKDEAD--LVY-LTQADKFQAIIEDV 437 (896)
T ss_pred CCCceeeeeehHHHHHHhcchhccCCCCChhHHHHHHHHhCCCEEECCCCCCcceecCCC--eEE-cCHHHHHHHHHHHH
Confidence 14556666665444444444333333322211111111111 122 22566888888888
Q ss_pred ccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCCCCC--
Q 047490 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLDVD-- 269 (323)
Q Consensus 192 ~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~~~~-- 269 (323)
.+....+.|+||||++...++.+++.|++.+++...+|+.++..++..+.+.|+. |. |+|||+.+++|+|+.+.
T Consensus 438 ~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~--G~--VtIATNmAGRGtDI~Lggn 513 (896)
T PRK13104 438 RECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRP--GA--VTIATNMAGRGTDIVLGGS 513 (896)
T ss_pred HHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCC--Cc--EEEeccCccCCcceecCCc
Confidence 7777789999999999999999999999999999999999999999999999998 85 99999999999998332
Q ss_pred -------------------------------------EEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHH
Q 047490 270 -------------------------------------HVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310 (323)
Q Consensus 270 -------------------------------------~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~ 310 (323)
+||-...+.|.+.-.|..||+||.|.+|.+..+++..|.-.
T Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~l~ 591 (896)
T PRK13104 514 LAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDNLM 591 (896)
T ss_pred hhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcHHH
Confidence 78888889999999999999999999999999999876543
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=200.39 Aligned_cols=278 Identities=17% Similarity=0.207 Sum_probs=186.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccc----cCCCCCEEEeChHHHHHHHHcCCCCCCCC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS----LNNPIDMVVGTPGRILQHIEDGNMVYGDI 92 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~ 92 (323)
+.++|||+|+++|+.|+.+.+++.+ +.++..++|+....++... ..+.++|+|+|+..++ ..++++
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~f---g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l 259 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARF---GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNL 259 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHh---CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCC
Confidence 6789999999999999999999875 4578888888765443322 2455799999998764 347889
Q ss_pred cEEeecchhhhhcCCC---hhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccccccccc
Q 047490 93 KYLVLDEADTMFDRGF---GPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIAS 169 (323)
Q Consensus 93 ~~vIiDE~h~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (323)
++||+||+|....+.. .-+.+.+....... .+.+++++|||++.+......... ...+...........
T Consensus 260 ~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~------~~~~~il~SATps~~s~~~~~~g~--~~~~~l~~r~~~~~~ 331 (679)
T PRK05580 260 GLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKL------ENIPVVLGSATPSLESLANAQQGR--YRLLRLTKRAGGARL 331 (679)
T ss_pred CEEEEECCCccccccCcCCCCcHHHHHHHHhhc------cCCCEEEEcCCCCHHHHHHHhccc--eeEEEeccccccCCC
Confidence 9999999997643221 11223332211111 134899999999866655543321 111111111111111
Q ss_pred ceeeEEeccCC------hhHHHHHHHHhccCCCCCCeEEEEecCcc----------------------------------
Q 047490 170 ARHDFIKLSGS------ENKLEALLQVLEPSLSKGNKVMVFCNTLN---------------------------------- 209 (323)
Q Consensus 170 ~~~~~~~~~~~------~~k~~~l~~~l~~~~~~~~~~lvf~~~~~---------------------------------- 209 (323)
.....+..... ......+++.+.+.++.++++|+|+|++.
T Consensus 332 p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~C 411 (679)
T PRK05580 332 PEVEIIDMRELLRGENGSFLSPPLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRC 411 (679)
T ss_pred CeEEEEechhhhhhcccCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEEC
Confidence 11122222110 01124556666666677889999988632
Q ss_pred --------------------------cHHHHHHHHhhC--CCeeEEecCCCC--HHHHHHHHHhccccCCCCCEEEEecc
Q 047490 210 --------------------------SSRAVDHFLNEN--QISTVNYHGEVP--AQERVENLNKFKNEDGDCPTLVCTDL 259 (323)
Q Consensus 210 --------------------------~~~~l~~~l~~~--~~~~~~~~~~~~--~~~r~~~~~~f~~~~g~~~ilv~t~~ 259 (323)
-++.+.+.|++. +.++..+|+++. +.+++.++++|++ |+.+|||+|+.
T Consensus 412 h~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~--g~~~ILVgT~~ 489 (679)
T PRK05580 412 HHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFAR--GEADILIGTQM 489 (679)
T ss_pred CCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhc--CCCCEEEEChh
Confidence 345666666664 668888999986 4578899999999 99999999999
Q ss_pred cccccCC-CCCEEEEcCCC--CC----------chhhhhhhcccccCCCcceEEEEeeCCcHHHHHHH
Q 047490 260 AARGLDL-DVDHVIMFDFP--LN----------SIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314 (323)
Q Consensus 260 ~~~Gid~-~~~~vi~~~~p--~s----------~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i 314 (323)
+..|+|+ +++.|++++.. .+ .+.|.|++||+||.++.|.+++.....+...++.+
T Consensus 490 iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~p~~~~~~~~ 557 (679)
T PRK05580 490 LAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYHPEHPVIQAL 557 (679)
T ss_pred hccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCCCCCHHHHHH
Confidence 9999999 99999766543 22 25689999999999999999988877665544433
|
|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-24 Score=206.53 Aligned_cols=267 Identities=15% Similarity=0.183 Sum_probs=178.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCc-cCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEE
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGG-RLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYL 95 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~v 95 (323)
..++++.-|.+--+..+++.+.+.. +..++...|.. ..+.. ...+..|.++|++.|.+.+... ..++++++|
T Consensus 111 ~~~I~~tQPRRlAA~svA~RvA~el---g~~lG~~VGY~vR~~~~---~s~~T~I~~~TdGiLLr~l~~d-~~L~~~~~I 183 (1283)
T TIGR01967 111 HGLIGHTQPRRLAARTVAQRIAEEL---GTPLGEKVGYKVRFHDQ---VSSNTLVKLMTDGILLAETQQD-RFLSRYDTI 183 (1283)
T ss_pred CceEecCCccHHHHHHHHHHHHHHh---CCCcceEEeeEEcCCcc---cCCCceeeeccccHHHHHhhhC-cccccCcEE
Confidence 3467777898887777776666654 23444444431 12221 2335689999999999888764 358899999
Q ss_pred eecchhh-hhcCCChhh-HHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceee
Q 047490 96 VLDEADT-MFDRGFGPD-IRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHD 173 (323)
Q Consensus 96 IiDE~h~-~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (323)
|+||+|. .++.++.-. +..++... .+.++|+||||+.. ..+...+...+ .+.... ....+...
T Consensus 184 IIDEaHERsL~~D~LL~lLk~il~~r---------pdLKlIlmSATld~--~~fa~~F~~ap-vI~V~G---r~~PVev~ 248 (1283)
T TIGR01967 184 IIDEAHERSLNIDFLLGYLKQLLPRR---------PDLKIIITSATIDP--ERFSRHFNNAP-IIEVSG---RTYPVEVR 248 (1283)
T ss_pred EEcCcchhhccchhHHHHHHHHHhhC---------CCCeEEEEeCCcCH--HHHHHHhcCCC-EEEECC---CcccceeE
Confidence 9999994 655444322 23332221 24599999999974 23333332222 222211 11122223
Q ss_pred EEeccC-----ChhHHHHHHHHhccCC-CCCCeEEEEecCcccHHHHHHHHhhCC---CeeEEecCCCCHHHHHHHHHhc
Q 047490 174 FIKLSG-----SENKLEALLQVLEPSL-SKGNKVMVFCNTLNSSRAVDHFLNENQ---ISTVNYHGEVPAQERVENLNKF 244 (323)
Q Consensus 174 ~~~~~~-----~~~k~~~l~~~l~~~~-~~~~~~lvf~~~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~r~~~~~~f 244 (323)
|..... ..++.+.+.+.+.+.. +.++.+|||+++..+++.+++.|++.+ ..+..+||+|+.+++..+++.+
T Consensus 249 Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~ 328 (1283)
T TIGR01967 249 YRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH 328 (1283)
T ss_pred EecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC
Confidence 332211 1134444544443321 245799999999999999999998763 4578899999999999885433
Q ss_pred cccCCCCCEEEEecccccccCC-CCCEEEEcCCC------------------CCchhhhhhhcccccCCCcceEEEEeeC
Q 047490 245 KNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFP------------------LNSIDYLHRTGRTARMGAKGKVTSLVAK 305 (323)
Q Consensus 245 ~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p------------------~s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 305 (323)
+..+|++||+++++|+++ ++++||++|.+ -|...|.||.||+||.+ +|.|+.+++.
T Consensus 329 ----~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte 403 (1283)
T TIGR01967 329 ----SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSE 403 (1283)
T ss_pred ----CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCH
Confidence 336899999999999999 99999999854 36678999999999997 9999999997
Q ss_pred CcHHH
Q 047490 306 KDVLL 310 (323)
Q Consensus 306 ~~~~~ 310 (323)
.+...
T Consensus 404 ~~~~~ 408 (1283)
T TIGR01967 404 EDFNS 408 (1283)
T ss_pred HHHHh
Confidence 76544
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-24 Score=191.76 Aligned_cols=251 Identities=21% Similarity=0.258 Sum_probs=170.3
Q ss_pred ccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEee
Q 047490 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVL 97 (323)
Q Consensus 18 ~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vIi 97 (323)
..+|||||+.+|+.||++.+....... ..++...|+..... . ..|.|+|.+++...-....+..+.+++||+
T Consensus 81 ~~~Lvlv~~~~L~~Qw~~~~~~~~~~~-~~~g~~~~~~~~~~------~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~ 152 (442)
T COG1061 81 RSTLVLVPTKELLDQWAEALKKFLLLN-DEIGIYGGGEKELE------P-AKVTVATVQTLARRQLLDEFLGNEFGLIIF 152 (442)
T ss_pred CCEEEEECcHHHHHHHHHHHHHhcCCc-cccceecCceeccC------C-CcEEEEEhHHHhhhhhhhhhcccccCEEEE
Confidence 349999999999999998888876532 12333333322111 1 369999999887642112233447999999
Q ss_pred cchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHH---HHHHhcCceeeecccccccc----ccc
Q 047490 98 DEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKL---VDEECQGIAHLRTSTLHKKI----ASA 170 (323)
Q Consensus 98 DE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~ 170 (323)
||||++.. +.+..+...+.... .++++||||+...... +...+. +..+......... ...
T Consensus 153 DE~Hh~~a----~~~~~~~~~~~~~~--------~~LGLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~ 219 (442)
T COG1061 153 DEVHHLPA----PSYRRILELLSAAY--------PRLGLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPY 219 (442)
T ss_pred EccccCCc----HHHHHHHHhhhccc--------ceeeeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccce
Confidence 99998754 44555555554431 2899999987433111 222221 1111111111100 000
Q ss_pred eeeEEec--c-----------------------------------CChhHHHHHHHHhccCCCCCCeEEEEecCcccHHH
Q 047490 171 RHDFIKL--S-----------------------------------GSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRA 213 (323)
Q Consensus 171 ~~~~~~~--~-----------------------------------~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~ 213 (323)
....+.. . ....+...+...+..+. .+.+++|||.+..+++.
T Consensus 220 ~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~ 298 (442)
T COG1061 220 KYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYE 298 (442)
T ss_pred EEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHH
Confidence 0000000 0 01123334444444333 56799999999999999
Q ss_pred HHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhccccc
Q 047490 214 VDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTAR 292 (323)
Q Consensus 214 l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R 292 (323)
++..|...+. +..+.|..+..+|..+++.|++ |..++|+++.++.+|+|+ +++++|...++.|...|.||+||.-|
T Consensus 299 i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~--g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 299 IAKLFLAPGI-VEAITGETPKEEREAILERFRT--GGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred HHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHc--CCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 9999987776 7889999999999999999999 889999999999999999 99999999999999999999999999
Q ss_pred C
Q 047490 293 M 293 (323)
Q Consensus 293 ~ 293 (323)
.
T Consensus 376 ~ 376 (442)
T COG1061 376 P 376 (442)
T ss_pred C
Confidence 3
|
|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.3e-24 Score=200.33 Aligned_cols=270 Identities=19% Similarity=0.244 Sum_probs=169.4
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHhcccc--ceeEEEeecCccCCcc---------------------ccccC---CC
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHA--RFRSTMVSGGGRLRPQ---------------------EDSLN---NP 67 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---------------------~~~~~---~~ 67 (323)
.....+++|..||+++++|++++++++.... ..++...+|....... ..++. +.
T Consensus 328 ~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr 407 (878)
T PRK09694 328 QGLADSIIFALPTQATANAMLSRLEALASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKR 407 (878)
T ss_pred hCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhh
Confidence 4445799999999999999999998754321 2356677765432110 01111 11
Q ss_pred ---CCEEEeChHHHHHHHHcC-CCCCCCC----cEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEee
Q 047490 68 ---IDMVVGTPGRILQHIEDG-NMVYGDI----KYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSAT 139 (323)
Q Consensus 68 ---~~Iii~Tp~~l~~~~~~~-~~~~~~~----~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat 139 (323)
.+|+|||...++...... ...++.+ ++|||||+|.+ ...+..++..+....... ..++|+||||
T Consensus 408 ~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svvIiDEVHAy-----D~ym~~lL~~~L~~l~~~---g~~vIllSAT 479 (878)
T PRK09694 408 VFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVLIVDEVHAY-----DAYMYGLLEAVLKAQAQA---GGSVILLSAT 479 (878)
T ss_pred hhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeEEEechhhC-----CHHHHHHHHHHHHHHHhc---CCcEEEEeCC
Confidence 589999998887554332 2223333 48999999964 333333333222221111 2379999999
Q ss_pred cchhhHHHHHHHhcCce------eeeccc-------cccccc------cceeeE--Eecc-CChhHHHHHHHHhccCCCC
Q 047490 140 MTKAVQKLVDEECQGIA------HLRTST-------LHKKIA------SARHDF--IKLS-GSENKLEALLQVLEPSLSK 197 (323)
Q Consensus 140 ~~~~~~~~~~~~~~~~~------~~~~~~-------~~~~~~------~~~~~~--~~~~-~~~~k~~~l~~~l~~~~~~ 197 (323)
+|....+.+...+.... .++... ...... ...... .... ........+++.+.+....
T Consensus 480 LP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~ 559 (878)
T PRK09694 480 LPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANA 559 (878)
T ss_pred CCHHHHHHHHHHhccccccccccccccccccccccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhc
Confidence 99887665544322110 000000 000000 001110 0000 0001112333333333346
Q ss_pred CCeEEEEecCcccHHHHHHHHhhCC---CeeEEecCCCCHHHH----HHHHHhc-cccCCC---CCEEEEecccccccCC
Q 047490 198 GNKVMVFCNTLNSSRAVDHFLNENQ---ISTVNYHGEVPAQER----VENLNKF-KNEDGD---CPTLVCTDLAARGLDL 266 (323)
Q Consensus 198 ~~~~lvf~~~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~r----~~~~~~f-~~~~g~---~~ilv~t~~~~~Gid~ 266 (323)
+++++||||+++.|+.+++.|++.+ ..+..+||+++..+| +++++.| ++ |+ ..|||+|++++.|+|+
T Consensus 560 g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~--g~r~~~~ILVaTQViE~GLDI 637 (878)
T PRK09694 560 GAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKN--GKRNQGRILVATQVVEQSLDL 637 (878)
T ss_pred CCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhc--CCcCCCeEEEECcchhheeec
Confidence 7899999999999999999998764 578999999999988 4567788 44 44 4699999999999999
Q ss_pred CCCEEEEcCCCCCchhhhhhhcccccCCC
Q 047490 267 DVDHVIMFDFPLNSIDYLHRTGRTARMGA 295 (323)
Q Consensus 267 ~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~ 295 (323)
+++.+|....| .+.++||+||++|.+.
T Consensus 638 d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 638 DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 99999998878 6789999999999874
|
|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-24 Score=197.56 Aligned_cols=284 Identities=15% Similarity=0.196 Sum_probs=206.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHH-HHHHHcCC------CCC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI-LQHIEDGN------MVY 89 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l-~~~~~~~~------~~~ 89 (323)
+..+-|++||..||.|.++.+..++...|+++..+.|+.....+..... ++|+++||..| ++++.... ...
T Consensus 122 G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~i~~~~~~~er~~~y~--~dI~ygT~~elgfDyLrd~~~~~~~~~~~ 199 (830)
T PRK12904 122 GKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERREAYA--ADITYGTNNEFGFDYLRDNMVFSLEERVQ 199 (830)
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHhcC--CCeEEECCcchhhhhhhcccccchhhhcc
Confidence 3457799999999999999999999999999999999877766555543 79999999999 88887654 346
Q ss_pred CCCcEEeecchhhhhcCC----------------ChhhHHHHHhhhcc--------------------------------
Q 047490 90 GDIKYLVLDEADTMFDRG----------------FGPDIRKFLVPLKN-------------------------------- 121 (323)
Q Consensus 90 ~~~~~vIiDE~h~~~~~~----------------~~~~~~~i~~~~~~-------------------------------- 121 (323)
+.+.++|+||+|.++=.+ ....+..+...+..
T Consensus 200 r~~~~aIvDEaDsiLIDeArtpLiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~l 279 (830)
T PRK12904 200 RGLNYAIVDEVDSILIDEARTPLIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENL 279 (830)
T ss_pred cccceEEEechhhheeccCCCceeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccc
Confidence 789999999999954100 00111111111110
Q ss_pred ------------------ccCCCCCCC-----------------------------------------------------
Q 047490 122 ------------------RASKPNGQG----------------------------------------------------- 130 (323)
Q Consensus 122 ------------------~~~~~~~~~----------------------------------------------------- 130 (323)
......+.+
T Consensus 280 y~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~q 359 (830)
T PRK12904 280 YDPENIALVHHLNQALRAHELFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQ 359 (830)
T ss_pred cChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHH
Confidence 000000000
Q ss_pred ------ceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEE
Q 047490 131 ------FQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVF 204 (323)
Q Consensus 131 ------~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf 204 (323)
.++.+||+|...+..++.+-+......++.-.......... .+ ......|..++.+.+.+....+.|+|||
T Consensus 360 n~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~IPtnkp~~r~d~~d--~i-~~t~~~K~~aI~~~I~~~~~~grpVLIf 436 (830)
T PRK12904 360 NYFRMYEKLAGMTGTADTEAEEFREIYNLDVVVIPTNRPMIRIDHPD--LI-YKTEKEKFDAVVEDIKERHKKGQPVLVG 436 (830)
T ss_pred HHHHhcchhcccCCCcHHHHHHHHHHhCCCEEEcCCCCCeeeeeCCC--eE-EECHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 15667777776555444444333333322211111111111 12 1235668899998887655678999999
Q ss_pred ecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCCCCC---------------
Q 047490 205 CNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLDVD--------------- 269 (323)
Q Consensus 205 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~~~~--------------- 269 (323)
|++...++.+++.|...+++...+|+. ..+|+..+..|.. +...|+|||+.+++|+|+.+.
T Consensus 437 t~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag--~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~ 512 (830)
T PRK12904 437 TVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAG--RPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEET 512 (830)
T ss_pred eCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcC--CCceEEEecccccCCcCccCCCchhhhhhhhhhhhh
Confidence 999999999999999999999999996 6789999999998 778899999999999999443
Q ss_pred ------------------------EEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHH
Q 047490 270 ------------------------HVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309 (323)
Q Consensus 270 ------------------------~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 309 (323)
+||-...|.|.+.-.|..||+||.|.+|.+..+++..|.-
T Consensus 513 ~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~l 576 (830)
T PRK12904 513 EEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDL 576 (830)
T ss_pred hHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcHH
Confidence 7888899999999999999999999999999999977653
|
|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8e-24 Score=199.73 Aligned_cols=284 Identities=16% Similarity=0.232 Sum_probs=187.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccc---cccCCCCCEEEeChHHHHHHHHcCCCCCCCCc
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQE---DSLNNPIDMVVGTPGRILQHIEDGNMVYGDIK 93 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~ 93 (323)
...+||||| .++..||.+++.+|.+ .+++..++|........ ......++|+|+|++.+..... .+..-.|+
T Consensus 219 ~gp~LIVvP-~SlL~nW~~Ei~kw~p--~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~ 293 (1033)
T PLN03142 219 TGPHMVVAP-KSTLGNWMNEIRRFCP--VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWR 293 (1033)
T ss_pred CCCEEEEeC-hHHHHHHHHHHHHHCC--CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCC
Confidence 357899999 5778999999999986 45677777654322111 1123457999999998865432 22334689
Q ss_pred EEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchh-hHHHHHH--Hh---------------cC-
Q 047490 94 YLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKA-VQKLVDE--EC---------------QG- 154 (323)
Q Consensus 94 ~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~-~~~~~~~--~~---------------~~- 154 (323)
+||+||||++-+. ......++..+... ..+++|+||..+ ..++... ++ ..
T Consensus 294 ~VIvDEAHrIKN~--~Sklskalr~L~a~---------~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~ 362 (1033)
T PLN03142 294 YIIIDEAHRIKNE--NSLLSKTMRLFSTN---------YRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQIS 362 (1033)
T ss_pred EEEEcCccccCCH--HHHHHHHHHHhhcC---------cEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccc
Confidence 9999999998542 33444555555432 578999998532 1111000 00 00
Q ss_pred -----------------ceeeeccc--cccccccceeeEEec--------------------------------------
Q 047490 155 -----------------IAHLRTST--LHKKIASARHDFIKL-------------------------------------- 177 (323)
Q Consensus 155 -----------------~~~~~~~~--~~~~~~~~~~~~~~~-------------------------------------- 177 (323)
+..++... .....+......+.+
T Consensus 363 ~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLR 442 (1033)
T PLN03142 363 GENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLR 442 (1033)
T ss_pred cccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 00000000 000000000000000
Q ss_pred ------------------------cCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCC
Q 047490 178 ------------------------SGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVP 233 (323)
Q Consensus 178 ------------------------~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 233 (323)
.....|+..|..++......+.++|||++.......+...|...++....++|+++
T Consensus 443 k~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts 522 (1033)
T PLN03142 443 KCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTG 522 (1033)
T ss_pred HHhCCHHhhhcccccCcccchhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCC
Confidence 00124555566666655567889999999999999999999989999999999999
Q ss_pred HHHHHHHHHhccccCC-CCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcce--EEEEeeCC--c
Q 047490 234 AQERVENLNKFKNEDG-DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGK--VTSLVAKK--D 307 (323)
Q Consensus 234 ~~~r~~~~~~f~~~~g-~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~--~~~~~~~~--~ 307 (323)
..+|..+++.|+++++ ...+|++|.+++.|+|+ .+++||+||+|||+....|++||++|.|+... ++.+++.. |
T Consensus 523 ~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIE 602 (1033)
T PLN03142 523 GEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIE 602 (1033)
T ss_pred HHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHH
Confidence 9999999999987433 34578999999999999 99999999999999999999999999997654 44455543 3
Q ss_pred HHHHHHHHH
Q 047490 308 VLLADRIEE 316 (323)
Q Consensus 308 ~~~~~~i~~ 316 (323)
...+.+..+
T Consensus 603 EkIlera~~ 611 (1033)
T PLN03142 603 EKVIERAYK 611 (1033)
T ss_pred HHHHHHHHH
Confidence 344444433
|
|
| >KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.5e-24 Score=174.86 Aligned_cols=284 Identities=17% Similarity=0.280 Sum_probs=211.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccc----c--CCCCCEEEeChHHHHHH---HHc--C
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS----L--NNPIDMVVGTPGRILQH---IED--G 85 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~Iii~Tp~~l~~~---~~~--~ 85 (323)
..-+||++|..+|+.+..-.++++ |+....+...+......+. . .....+++.||+++... +.+ .
T Consensus 134 dg~alvi~plislmedqil~lkql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnklek 209 (695)
T KOG0353|consen 134 DGFALVICPLISLMEDQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEK 209 (695)
T ss_pred CCceEeechhHHHHHHHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHH
Confidence 357899999999998888888887 4455555554443332211 1 23467999999998432 222 2
Q ss_pred CCCCCCCcEEeecchhhhhcCC--ChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccc
Q 047490 86 NMVYGDIKYLVLDEADTMFDRG--FGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTL 163 (323)
Q Consensus 86 ~~~~~~~~~vIiDE~h~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~ 163 (323)
.+....+.++-+||+|+-.+|+ |++.+..+-..-++. ++.+++++|||..+.+....+..+.....+... .
T Consensus 210 a~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf------~~~~iigltatatn~vl~d~k~il~ie~~~tf~-a 282 (695)
T KOG0353|consen 210 ALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQF------KGAPIIGLTATATNHVLDDAKDILCIEAAFTFR-A 282 (695)
T ss_pred HhhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhC------CCCceeeeehhhhcchhhHHHHHHhHHhhheee-c
Confidence 3456678999999999999888 777666543221211 234899999999888777666554332222111 1
Q ss_pred ccccccceeeEEecc-CChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHH
Q 047490 164 HKKIASARHDFIKLS-GSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLN 242 (323)
Q Consensus 164 ~~~~~~~~~~~~~~~-~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~ 242 (323)
....++.......-+ ..++.++.+.+.++..+ .|...||||-+.+.++.++..|++.|+....+|..|.+.++...-+
T Consensus 283 ~fnr~nl~yev~qkp~n~dd~~edi~k~i~~~f-~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq 361 (695)
T KOG0353|consen 283 GFNRPNLKYEVRQKPGNEDDCIEDIAKLIKGDF-AGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQ 361 (695)
T ss_pred ccCCCCceeEeeeCCCChHHHHHHHHHHhcccc-CCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccc
Confidence 122233333333333 34567888888887754 5678899999999999999999999999999999999999999999
Q ss_pred hccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhh------------------------------------
Q 047490 243 KFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLH------------------------------------ 285 (323)
Q Consensus 243 ~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q------------------------------------ 285 (323)
.|-. |+++|+|+|-++++|+|- ++..||+..+|+|...|.|
T Consensus 362 ~w~a--~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkif 439 (695)
T KOG0353|consen 362 GWIA--GEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIF 439 (695)
T ss_pred cccc--cceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceee
Confidence 9999 999999999999999999 9999999999999999999
Q ss_pred -------hhcccccCCCcceEEEEeeCCcHHHHHHH
Q 047490 286 -------RTGRTARMGAKGKVTSLVAKKDVLLADRI 314 (323)
Q Consensus 286 -------~~GR~~R~~~~g~~~~~~~~~~~~~~~~i 314 (323)
..||+||.+++..|+.++--.|...+...
T Consensus 440 favfsekesgragrd~~~a~cilyy~~~difk~ssm 475 (695)
T KOG0353|consen 440 FAVFSEKESGRAGRDDMKADCILYYGFADIFKISSM 475 (695)
T ss_pred eeeecchhccccccCCCcccEEEEechHHHHhHHHH
Confidence 67999999999999999987776554443
|
|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-24 Score=196.91 Aligned_cols=281 Identities=17% Similarity=0.228 Sum_probs=200.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcC-CCC-CCCCcE
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDG-NMV-YGDIKY 94 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~-~~~-~~~~~~ 94 (323)
..++.|++|.++|++.+...+.+.....++++...+|+.....+. ..+.+|+|||||++...-++. ... .+-+++
T Consensus 364 ~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~DiITRk~gdraY~qlvrL 440 (1674)
T KOG0951|consen 364 PFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEKWDIITRKSGDRAYEQLVRL 440 (1674)
T ss_pred cceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEecccccchhhh---hhcceeEEeccchhhhhhcccCchhHHHHHHH
Confidence 358999999999999999999999999999999999986543221 124689999999987655442 122 335789
Q ss_pred EeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCce-ee-ecccccccccccee
Q 047490 95 LVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIA-HL-RTSTLHKKIASARH 172 (323)
Q Consensus 95 vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~ 172 (323)
+|+||.|.+.+ .+++....+..+..... .......+++++|||+|+-.. +..++.... .+ ..+.. -..-...+
T Consensus 441 lIIDEIHLLhD-dRGpvLESIVaRt~r~s-es~~e~~RlVGLSATLPNy~D--V~~Fl~v~~~glf~fd~s-yRpvPL~q 515 (1674)
T KOG0951|consen 441 LIIDEIHLLHD-DRGPVLESIVARTFRRS-ESTEEGSRLVGLSATLPNYED--VASFLRVDPEGLFYFDSS-YRPVPLKQ 515 (1674)
T ss_pred Hhhhhhhhccc-ccchHHHHHHHHHHHHh-hhcccCceeeeecccCCchhh--hHHHhccCcccccccCcc-cCcCCccc
Confidence 99999998766 47888888876654432 122235699999999996543 222222111 11 11111 12223445
Q ss_pred eEEeccCC--hhHHHHHHHHh----ccCCCCCCeEEEEecCcccHHHHHHHHhh--------------------------
Q 047490 173 DFIKLSGS--ENKLEALLQVL----EPSLSKGNKVMVFCNTLNSSRAVDHFLNE-------------------------- 220 (323)
Q Consensus 173 ~~~~~~~~--~~k~~~l~~~l----~~~~~~~~~~lvf~~~~~~~~~l~~~l~~-------------------------- 220 (323)
+|+-+... ..+.+++-+++ -++..+ +++|||+.+++++...++.++.
T Consensus 516 q~Igi~ek~~~~~~qamNe~~yeKVm~~agk-~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea 594 (1674)
T KOG0951|consen 516 QYIGITEKKPLKRFQAMNEACYEKVLEHAGK-NQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEA 594 (1674)
T ss_pred eEeccccCCchHHHHHHHHHHHHHHHHhCCC-CcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhh
Confidence 55554432 22333332222 223333 7999999999998888887763
Q ss_pred -----------CCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCCCCCEEEEcCC-----------CC
Q 047490 221 -----------NQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDF-----------PL 278 (323)
Q Consensus 221 -----------~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~~~~~vi~~~~-----------p~ 278 (323)
..++++++|.||+..+|..+.+.|.. |.++++++|.+++.|+|++++.||+=+. +.
T Consensus 595 ~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~--g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~el 672 (1674)
T KOG0951|consen 595 GQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFAD--GHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTEL 672 (1674)
T ss_pred hcccChhHHHHhhccceeeccCCCcchHHHHHHHHhc--CceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccC
Confidence 24678899999999999999999999 9999999999999999999999998553 34
Q ss_pred CchhhhhhhcccccCC--CcceEEEEeeCCcH
Q 047490 279 NSIDYLHRTGRTARMG--AKGKVTSLVAKKDV 308 (323)
Q Consensus 279 s~~~~~Q~~GR~~R~~--~~g~~~~~~~~~~~ 308 (323)
++.+..||.||+||.+ ..|.+++.....+.
T Consensus 673 sp~dv~qmlgragrp~~D~~gegiiit~~se~ 704 (1674)
T KOG0951|consen 673 SPLDVMQMLGRAGRPQYDTCGEGIIITDHSEL 704 (1674)
T ss_pred CHHHHHHHHhhcCCCccCcCCceeeccCchHh
Confidence 8899999999999987 35666666555444
|
|
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.2e-24 Score=193.23 Aligned_cols=293 Identities=17% Similarity=0.190 Sum_probs=205.8
Q ss_pred hhhhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHH-HHHHHc
Q 047490 6 EAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI-LQHIED 84 (323)
Q Consensus 6 ~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l-~~~~~~ 84 (323)
.++...+..-.|..+-+++|+.-||.|-++.+..++..+|++++.+.++.......... .++|.++|...| ++++..
T Consensus 110 A~l~a~l~al~G~~v~vvT~neyLA~Rd~e~~~~~~~~LGl~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD 187 (796)
T PRK12906 110 ATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELYRWLGLTVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRD 187 (796)
T ss_pred HHHHHHHHHHcCCCeEEEeccHHHHHhhHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhh
Confidence 34444455556788999999999999999999999999999999998876555443333 469999999888 455554
Q ss_pred CC------CCCCCCcEEeecchhhhhcCC----------------ChhhHHHHHhhhcccc-------------------
Q 047490 85 GN------MVYGDIKYLVLDEADTMFDRG----------------FGPDIRKFLVPLKNRA------------------- 123 (323)
Q Consensus 85 ~~------~~~~~~~~vIiDE~h~~~~~~----------------~~~~~~~i~~~~~~~~------------------- 123 (323)
+. ...+.+.+.|+||+|.++=.+ ....+..+...+....
T Consensus 188 ~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~ 267 (796)
T PRK12906 188 NMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKT 267 (796)
T ss_pred ccccchhhhhccCcceeeeccchheeeccCCCceecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEccc
Confidence 31 234678899999999954100 0111122222211100
Q ss_pred -------------------CCCC-CCC-----------------------------------------------------
Q 047490 124 -------------------SKPN-GQG----------------------------------------------------- 130 (323)
Q Consensus 124 -------------------~~~~-~~~----------------------------------------------------- 130 (323)
.... ..+
T Consensus 268 k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQa 347 (796)
T PRK12906 268 KTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQA 347 (796)
T ss_pred CceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHH
Confidence 0000 000
Q ss_pred ----------------------------ceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeE--EeccCC
Q 047490 131 ----------------------------FQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDF--IKLSGS 180 (323)
Q Consensus 131 ----------------------------~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 180 (323)
.++.+||+|...+..++.+-+......++.- . +..+... ......
T Consensus 348 ieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~e~~Ef~~iY~l~vv~IPtn---k--p~~r~d~~d~i~~t~ 422 (796)
T PRK12906 348 IEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTEEEEFREIYNMEVITIPTN---R--PVIRKDSPDLLYPTL 422 (796)
T ss_pred HHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCCEEEcCCC---C--CeeeeeCCCeEEcCH
Confidence 1555666666544333333222222222111 1 1111111 111224
Q ss_pred hhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEeccc
Q 047490 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLA 260 (323)
Q Consensus 181 ~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~ 260 (323)
..|..++.+.+......+.|+||||++...++.++..|.+.+++...+|+++...++..+.+.++. |. |+|||+.+
T Consensus 423 ~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~--g~--VtIATnmA 498 (796)
T PRK12906 423 DSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQR--GA--VTIATNMA 498 (796)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCC--ce--EEEEeccc
Confidence 568888888887655688999999999999999999999999999999999998888888888887 77 99999999
Q ss_pred ccccCCC----CC-----EEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHH
Q 047490 261 ARGLDLD----VD-----HVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309 (323)
Q Consensus 261 ~~Gid~~----~~-----~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 309 (323)
++|+|+. +. +||+++.|.|.+.|.|+.||+||.|.+|.+..+++..|.-
T Consensus 499 GRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD~l 556 (796)
T PRK12906 499 GRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDL 556 (796)
T ss_pred cCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccchH
Confidence 9999982 56 9999999999999999999999999999999999987653
|
|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.7e-23 Score=165.40 Aligned_cols=275 Identities=18% Similarity=0.238 Sum_probs=196.3
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcE
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKY 94 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~ 94 (323)
..|.++.+..|..+.+.+++.++++.+. +..+..++|++....+ .+++|+|...++++. +.+++
T Consensus 142 ~~G~~vciASPRvDVclEl~~Rlk~aF~--~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk-------~aFD~ 205 (441)
T COG4098 142 NQGGRVCIASPRVDVCLELYPRLKQAFS--NCDIDLLYGDSDSYFR-------APLVVATTHQLLRFK-------QAFDL 205 (441)
T ss_pred hcCCeEEEecCcccchHHHHHHHHHhhc--cCCeeeEecCCchhcc-------ccEEEEehHHHHHHH-------hhccE
Confidence 3478999999999999999999999886 4578889998665443 479999998888754 36889
Q ss_pred EeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeE
Q 047490 95 LVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDF 174 (323)
Q Consensus 95 vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (323)
+|+||+|...-. -...+...+...... . =..|.+|||+++.+.+.+...-.....+.... ..-+-+...+
T Consensus 206 liIDEVDAFP~~-~d~~L~~Av~~ark~---~----g~~IylTATp~k~l~r~~~~g~~~~~klp~Rf--H~~pLpvPkf 275 (441)
T COG4098 206 LIIDEVDAFPFS-DDQSLQYAVKKARKK---E----GATIYLTATPTKKLERKILKGNLRILKLPARF--HGKPLPVPKF 275 (441)
T ss_pred EEEecccccccc-CCHHHHHHHHHhhcc---c----CceEEEecCChHHHHHHhhhCCeeEeecchhh--cCCCCCCCce
Confidence 999999975321 123333333333221 1 16899999999888776655433333332222 2222222233
Q ss_pred EeccCChhHH------HHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC--CCeeEEecCCCCHHHHHHHHHhccc
Q 047490 175 IKLSGSENKL------EALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN--QISTVNYHGEVPAQERVENLNKFKN 246 (323)
Q Consensus 175 ~~~~~~~~k~------~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~ 246 (323)
.+..+-..++ ..|...|+.....+.|++||+++....+.+++.|+.. ...+...|+.. ..|.+..++|++
T Consensus 276 ~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d--~~R~EkV~~fR~ 353 (441)
T COG4098 276 VWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSED--QHRKEKVEAFRD 353 (441)
T ss_pred EEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccC--ccHHHHHHHHHc
Confidence 4443323222 2566677666678899999999999999999999554 33446778764 478899999999
Q ss_pred cCCCCCEEEEecccccccCC-CCCEEEEcCCC--CCchhhhhhhcccccCC--CcceEEEEeeCCcHHHHHHHHHHHH
Q 047490 247 EDGDCPTLVCTDLAARGLDL-DVDHVIMFDFP--LNSIDYLHRTGRTARMG--AKGKVTSLVAKKDVLLADRIEEAIR 319 (323)
Q Consensus 247 ~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p--~s~~~~~Q~~GR~~R~~--~~g~~~~~~~~~~~~~~~~i~~~l~ 319 (323)
|++.+||+|.++++|+.+ +++..+.-.-. .+.....|.+||+||.- ..|.+..|......++.+.+.++-+
T Consensus 354 --G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~skaM~~A~keIk~ 429 (441)
T COG4098 354 --GKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKSKAMKQARKEIKE 429 (441)
T ss_pred --CceEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccchHHHHHHHHHHHH
Confidence 999999999999999999 88876664433 47788899999999976 3688888887777777777666543
|
|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.1e-23 Score=190.73 Aligned_cols=270 Identities=17% Similarity=0.220 Sum_probs=197.1
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcE
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKY 94 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~ 94 (323)
.++.+++|..|.++|.+|.++.+...+.+..--++..+|+.. .+.++.++|+|.|.|.+++.+....+..+.+
T Consensus 160 ~~~qrviYTsPIKALsNQKyrdl~~~fgdv~~~vGL~TGDv~-------IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ 232 (1041)
T COG4581 160 RDGQRVIYTSPIKALSNQKYRDLLAKFGDVADMVGLMTGDVS-------INPDAPCLVMTTEILRNMLYRGSESLRDIEW 232 (1041)
T ss_pred HcCCceEeccchhhhhhhHHHHHHHHhhhhhhhccceeccee-------eCCCCceEEeeHHHHHHHhccCcccccccce
Confidence 446779999999999999999999987643223466666643 3445789999999999999999888999999
Q ss_pred EeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhh--HHHHHHHhcCceeeecccccccccccee
Q 047490 95 LVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAV--QKLVDEECQGIAHLRTSTLHKKIASARH 172 (323)
Q Consensus 95 vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (323)
||+||+|.+.+...+...+.++..++.. ++++++|||.++.. ..|++..-..+.++... ........+
T Consensus 233 ViFDEvHyi~D~eRG~VWEE~Ii~lP~~--------v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t--~~RpvPL~~ 302 (1041)
T COG4581 233 VVFDEVHYIGDRERGVVWEEVIILLPDH--------VRFVFLSATVPNAEEFAEWIQRVHSQPIHVVST--EHRPVPLEH 302 (1041)
T ss_pred EEEEeeeeccccccchhHHHHHHhcCCC--------CcEEEEeCCCCCHHHHHHHHHhccCCCeEEEee--cCCCCCeEE
Confidence 9999999999998999899999888764 49999999998654 44555443333332221 111222222
Q ss_pred eEEec------cCChhH--------H---------------------------------------HHHHHHhccCCCCCC
Q 047490 173 DFIKL------SGSENK--------L---------------------------------------EALLQVLEPSLSKGN 199 (323)
Q Consensus 173 ~~~~~------~~~~~k--------~---------------------------------------~~l~~~l~~~~~~~~ 199 (323)
++..- .+...+ . ..+...+.. .+.-
T Consensus 303 ~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~--~~~l 380 (1041)
T COG4581 303 FVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDK--DNLL 380 (1041)
T ss_pred EEecCCceeeeecccccchhhcchhhhhhhhccchhccccCccccccccccccccCCcccccccchHHHhhhhh--hcCC
Confidence 21111 000000 0 011111111 2345
Q ss_pred eEEEEecCcccHHHHHHHHhh----------------------------CC-------------CeeEEecCCCCHHHHH
Q 047490 200 KVMVFCNTLNSSRAVDHFLNE----------------------------NQ-------------ISTVNYHGEVPAQERV 238 (323)
Q Consensus 200 ~~lvf~~~~~~~~~l~~~l~~----------------------------~~-------------~~~~~~~~~~~~~~r~ 238 (323)
|+|+|+-++..|+.++..+.. .+ ..++++|++|=+..+.
T Consensus 381 P~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~ 460 (1041)
T COG4581 381 PAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKE 460 (1041)
T ss_pred ceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHH
Confidence 899999999999988776642 01 1345799999999999
Q ss_pred HHHHhccccCCCCCEEEEecccccccCCCCCEEEEcCCC---------CCchhhhhhhcccccCCC--cceEEEEeeC
Q 047490 239 ENLNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDFP---------LNSIDYLHRTGRTARMGA--KGKVTSLVAK 305 (323)
Q Consensus 239 ~~~~~f~~~~g~~~ilv~t~~~~~Gid~~~~~vi~~~~p---------~s~~~~~Q~~GR~~R~~~--~g~~~~~~~~ 305 (323)
.+.+.|.+ |-++|+++|.+++.|+|+++..|+++... -+..+|.|+.||+||.|. .|.++++..+
T Consensus 461 ~vE~Lfq~--GLvkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~ 536 (1041)
T COG4581 461 LVEELFQE--GLVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPP 536 (1041)
T ss_pred HHHHHHhc--cceeEEeehhhhhhhcCCcccceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCC
Confidence 99999999 99999999999999999999999998653 389999999999999994 6777777443
|
|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-22 Score=185.66 Aligned_cols=285 Identities=13% Similarity=0.157 Sum_probs=205.2
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHH-HHHHHcC-CCC-----
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI-LQHIEDG-NMV----- 88 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l-~~~~~~~-~~~----- 88 (323)
.+..|.||+|+..||.|.++++..+...+|+++..+.++.+..... -..+++|+++||..| ++++..+ ...
T Consensus 122 ~g~~VhIvT~ndyLA~RD~e~m~~l~~~lGlsv~~i~~~~~~~~r~--~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~v 199 (908)
T PRK13107 122 TGKGVHVITVNDYLARRDAENNRPLFEFLGLTVGINVAGLGQQEKK--AAYNADITYGTNNEFGFDYLRDNMAFSPQERV 199 (908)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEecCCCCHHHHH--hcCCCCeEEeCCCcccchhhhccCccchhhhh
Confidence 3455999999999999999999999999999999998886653322 223579999999999 8888776 222
Q ss_pred CCCCcEEeecchhhhhcCC----------------ChhhHHHHHhhhcc-------------------------------
Q 047490 89 YGDIKYLVLDEADTMFDRG----------------FGPDIRKFLVPLKN------------------------------- 121 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~----------------~~~~~~~i~~~~~~------------------------------- 121 (323)
.+.+.++|+||+|.++-.+ ....+..++..+..
T Consensus 200 qr~~~~aIvDEvDsiLiDEArtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~ 279 (908)
T PRK13107 200 QRPLHYALIDEVDSILIDEARTPLIISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQ 279 (908)
T ss_pred ccccceeeecchhhhccccCCCceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHH
Confidence 3778999999999965211 00011111111110
Q ss_pred -----cc---------CCCC-C--------------------CC------------------------------------
Q 047490 122 -----RA---------SKPN-G--------------------QG------------------------------------ 130 (323)
Q Consensus 122 -----~~---------~~~~-~--------------------~~------------------------------------ 130 (323)
.. .... . .+
T Consensus 280 ~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEa 359 (908)
T PRK13107 280 EKVENLLIERGMLAEGDSLYSAANISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEA 359 (908)
T ss_pred HHHHHHHHhCCcccCcccccCchhhHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHH
Confidence 00 0000 0 00
Q ss_pred -------------------------ceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEeccCChhHHH
Q 047490 131 -------------------------FQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLE 185 (323)
Q Consensus 131 -------------------------~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 185 (323)
.++.+||+|...+..++.+-+......++.-.......... .+. .....|..
T Consensus 360 KE~v~I~~e~~t~AsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~Vv~IPTnkp~~R~d~~d--~iy-~t~~~K~~ 436 (908)
T PRK13107 360 KEGVHIQNENQTLASITFQNYFRQYEKLAGMTGTADTEAFEFQHIYGLDTVVVPTNRPMVRKDMAD--LVY-LTADEKYQ 436 (908)
T ss_pred hcCCCCCCCceeeeeehHHHHHHhhhHhhcccCCChHHHHHHHHHhCCCEEECCCCCCccceeCCC--cEE-eCHHHHHH
Confidence 14566666665544444443333333322211111111111 111 23467888
Q ss_pred HHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccC
Q 047490 186 ALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLD 265 (323)
Q Consensus 186 ~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid 265 (323)
++.+.+.+....|.|+||||++...++.++..|...+++...+|+.++..++..+.+.|+. |. |+|||+.+++|+|
T Consensus 437 Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~--G~--VtIATnmAGRGTD 512 (908)
T PRK13107 437 AIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRT--GA--VTIATNMAGRGTD 512 (908)
T ss_pred HHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCC--Cc--EEEecCCcCCCcc
Confidence 8888887776789999999999999999999999999999999999999999999999998 88 9999999999999
Q ss_pred CCCC--------------------------------------EEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCc
Q 047490 266 LDVD--------------------------------------HVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307 (323)
Q Consensus 266 ~~~~--------------------------------------~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 307 (323)
+.+. +||-...+.|.+.-.|..||+||.|.+|.+..+++..|
T Consensus 513 IkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED 592 (908)
T PRK13107 513 IVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMED 592 (908)
T ss_pred eecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCc
Confidence 8332 78888999999999999999999999999999999876
Q ss_pred HH
Q 047490 308 VL 309 (323)
Q Consensus 308 ~~ 309 (323)
.-
T Consensus 593 ~L 594 (908)
T PRK13107 593 SL 594 (908)
T ss_pred HH
Confidence 63
|
|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4e-22 Score=191.52 Aligned_cols=267 Identities=18% Similarity=0.232 Sum_probs=164.8
Q ss_pred cccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcC-----
Q 047490 11 VLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDG----- 85 (323)
Q Consensus 11 ~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~----- 85 (323)
.+...+..++|+|+|+.+|+.|+.+.++.+..........+++...... ........|+|+|++++.+.+...
T Consensus 457 L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~~~~~~i~~i~~L~~--~~~~~~~~I~iaTiQtl~~~~~~~~~~~~ 534 (1123)
T PRK11448 457 LLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGDQTFASIYDIKGLED--KFPEDETKVHVATVQGMVKRILYSDDPMD 534 (1123)
T ss_pred HHhcCccCeEEEEecHHHHHHHHHHHHHhcccccccchhhhhchhhhhh--hcccCCCCEEEEEHHHHHHhhhccccccc
Confidence 3445556799999999999999999999875432212211221111011 111234689999999997765321
Q ss_pred CCCCCCCcEEeecchhhhhcC------C---------ChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHH
Q 047490 86 NMVYGDIKYLVLDEADTMFDR------G---------FGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDE 150 (323)
Q Consensus 86 ~~~~~~~~~vIiDE~h~~~~~------~---------~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~ 150 (323)
...+..+++||+||||+.... + +...++.++..+.. ..|++||||...+...+..
T Consensus 535 ~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yFdA----------~~IGLTATP~r~t~~~FG~ 604 (1123)
T PRK11448 535 KPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYFDA----------VKIGLTATPALHTTEIFGE 604 (1123)
T ss_pred cCCCCcccEEEEECCCCCCccccccccchhccchhhhHHHHHHHHHhhcCc----------cEEEEecCCccchhHHhCC
Confidence 135678999999999985310 0 12456666665432 5899999997554332211
Q ss_pred Hh--------------cC---ceeeecccccc--cccc------cee---eE--EeccC--------------ChhHH--
Q 047490 151 EC--------------QG---IAHLRTSTLHK--KIAS------ARH---DF--IKLSG--------------SENKL-- 184 (323)
Q Consensus 151 ~~--------------~~---~~~~~~~~~~~--~~~~------~~~---~~--~~~~~--------------~~~k~-- 184 (323)
.. -. +..+....... .... ... .. ...+. .+...
T Consensus 605 pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~ 684 (1123)
T PRK11448 605 PVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRV 684 (1123)
T ss_pred eeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHH
Confidence 00 00 00000000000 0000 000 00 00000 00011
Q ss_pred --HHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC---------CCeeEEecCCCCHHHHHHHHHhccccCCCC-C
Q 047490 185 --EALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN---------QISTVNYHGEVPAQERVENLNKFKNEDGDC-P 252 (323)
Q Consensus 185 --~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~---------~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~-~ 252 (323)
..+.+.+.. ..++|+||||.+..+|+.+++.|.+. +..+..++|+++ ++.+++++|++ +.. .
T Consensus 685 i~~~l~~~l~~--~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~--~~~p~ 758 (1123)
T PRK11448 685 VCEELAKYLDP--TGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKN--ERLPN 758 (1123)
T ss_pred HHHHHHHHHhc--cCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhC--CCCCe
Confidence 122222222 13479999999999999998887652 124456888876 56789999998 665 5
Q ss_pred EEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCC
Q 047490 253 TLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGA 295 (323)
Q Consensus 253 ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~ 295 (323)
|+|+++.+.+|+|+ ++++||++.++.|...|.|++||+.|...
T Consensus 759 IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~ 802 (1123)
T PRK11448 759 IVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLCP 802 (1123)
T ss_pred EEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCCc
Confidence 89999999999999 89999999999999999999999999753
|
|
| >KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.9e-22 Score=174.08 Aligned_cols=272 Identities=17% Similarity=0.244 Sum_probs=189.8
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccc--c-cCCCCCEEEeChHHHHHHHHcCCCCCC
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQED--S-LNNPIDMVVGTPGRILQHIEDGNMVYG 90 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~Iii~Tp~~l~~~~~~~~~~~~ 90 (323)
..+|| -||++|...| ..|.+++++|.+ ++++..++|+........ . ..++++|+|||++...+- ...+.--
T Consensus 215 ~~~GP-fLVi~P~StL-~NW~~Ef~rf~P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~ 288 (971)
T KOG0385|consen 215 GIPGP-FLVIAPKSTL-DNWMNEFKRFTP--SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKF 288 (971)
T ss_pred CCCCC-eEEEeeHhhH-HHHHHHHHHhCC--CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcC
Confidence 34454 5788997665 558889999988 568999999865433221 1 234789999999988664 2223344
Q ss_pred CCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecch-hhHHHH---------------------
Q 047490 91 DIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTK-AVQKLV--------------------- 148 (323)
Q Consensus 91 ~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~-~~~~~~--------------------- 148 (323)
+|+|+||||+|++-+ ....+..++..+... ..+++|+||-. .+.+..
T Consensus 289 ~W~ylvIDEaHRiKN--~~s~L~~~lr~f~~~---------nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF 357 (971)
T KOG0385|consen 289 NWRYLVIDEAHRIKN--EKSKLSKILREFKTD---------NRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWF 357 (971)
T ss_pred CceEEEechhhhhcc--hhhHHHHHHHHhccc---------ceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHH
Confidence 799999999999865 345555666666544 46788888742 221110
Q ss_pred --------------------------------------------------------------------------------
Q 047490 149 -------------------------------------------------------------------------------- 148 (323)
Q Consensus 149 -------------------------------------------------------------------------------- 148 (323)
T Consensus 358 ~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI 437 (971)
T KOG0385|consen 358 DFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNI 437 (971)
T ss_pred cccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHH
Confidence
Q ss_pred ----HHHhcCceeeeccccccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCe
Q 047490 149 ----DEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQIS 224 (323)
Q Consensus 149 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~ 224 (323)
..+|.++.-+.. ..+..+.....+. .....|+..|-++|....+.|.++|||.+-.....-+-.++.-.++.
T Consensus 438 ~mQLRKccnHPYLF~g-~ePg~pyttdehL---v~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ 513 (971)
T KOG0385|consen 438 MMQLRKCCNHPYLFDG-AEPGPPYTTDEHL---VTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYE 513 (971)
T ss_pred HHHHHHhcCCccccCC-CCCCCCCCcchHH---HhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCce
Confidence 011111111111 0000111111111 11234666666666666678999999999999999888888888999
Q ss_pred eEEecCCCCHHHHHHHHHhccccCCC-CCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEE
Q 047490 225 TVNYHGEVPAQERVENLNKFKNEDGD-CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302 (323)
Q Consensus 225 ~~~~~~~~~~~~r~~~~~~f~~~~g~-~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~ 302 (323)
.+.+.|.++-++|...++.|+.++++ .-+|++|.+.+.|||+ .+++||+||..||+.--.|++.|++|.|+...|.++
T Consensus 514 ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~ 593 (971)
T KOG0385|consen 514 YCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVY 593 (971)
T ss_pred eEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEE
Confidence 99999999999999999999996543 4578999999999999 999999999999999999999999999987655554
Q ss_pred eeCC
Q 047490 303 VAKK 306 (323)
Q Consensus 303 ~~~~ 306 (323)
-.-.
T Consensus 594 RLit 597 (971)
T KOG0385|consen 594 RLIT 597 (971)
T ss_pred EEec
Confidence 4433
|
|
| >KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.4e-22 Score=179.63 Aligned_cols=283 Identities=17% Similarity=0.221 Sum_probs=202.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcC--CCCCCCCcE
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDG--NMVYGDIKY 94 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~--~~~~~~~~~ 94 (323)
...++.+.|..+.+.+-...+..+....|+.+...+|........ ..-.+.|+|-|+-..+++.. .-.+..+.+
T Consensus 269 rr~~llilp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~~----k~~sv~i~tiEkanslin~lie~g~~~~~g~ 344 (1008)
T KOG0950|consen 269 RRNVLLILPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKRR----KRESVAIATIEKANSLINSLIEQGRLDFLGM 344 (1008)
T ss_pred hhceeEecceeehhHHHHhhhhhhccccCCcchhhcccCCCCCcc----cceeeeeeehHhhHhHHHHHHhcCCccccCc
Confidence 457888999999999999999999999998888877554433222 23479999999886665542 234667899
Q ss_pred EeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchh--hHHHHHHHhcCceeeeccccccccccce-
Q 047490 95 LVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKA--VQKLVDEECQGIAHLRTSTLHKKIASAR- 171 (323)
Q Consensus 95 vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 171 (323)
||+||.|.+.+.+.+...+.++.++...+... .+|+|+||||+++. +..+++...... ...+....+..
T Consensus 345 vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~~---~~~iIGMSATi~N~~lL~~~L~A~~y~t-----~fRPv~L~E~ik 416 (1008)
T KOG0950|consen 345 VVVDELHMIGDKGRGAILELLLAKILYENLET---SVQIIGMSATIPNNSLLQDWLDAFVYTT-----RFRPVPLKEYIK 416 (1008)
T ss_pred EEEeeeeeeeccccchHHHHHHHHHHHhcccc---ceeEeeeecccCChHHHHHHhhhhheec-----ccCcccchhccC
Confidence 99999999999999999999988887665433 37899999999853 444444332211 01111110000
Q ss_pred --eeEEeccCChhHH----------------HHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhh-------------
Q 047490 172 --HDFIKLSGSENKL----------------EALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE------------- 220 (323)
Q Consensus 172 --~~~~~~~~~~~k~----------------~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~------------- 220 (323)
...+... ...-. +.+..++.+...++.++||||++++-|+.++..+..
T Consensus 417 ~G~~i~~~~-r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~ 495 (1008)
T KOG0950|consen 417 PGSLIYESS-RNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLG 495 (1008)
T ss_pred CCcccccch-hhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhh
Confidence 0000000 00000 223333333334566899999999999988765532
Q ss_pred -------------------------CCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCCCCCEEEEcC
Q 047490 221 -------------------------NQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFD 275 (323)
Q Consensus 221 -------------------------~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~~~~~vi~~~ 275 (323)
...+++++|.++..++|+.+...|++ |...|++||+++..|+|+++..||+-.
T Consensus 496 ~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~--g~i~vl~aTSTlaaGVNLPArRVIira 573 (1008)
T KOG0950|consen 496 LWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFRE--GNIFVLVATSTLAAGVNLPARRVIIRA 573 (1008)
T ss_pred HHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHh--cCeEEEEecchhhccCcCCcceeEEeC
Confidence 14577889999999999999999999 999999999999999999888888754
Q ss_pred C-----CCCchhhhhhhcccccCC--CcceEEEEeeCCcHHHHHHH
Q 047490 276 F-----PLNSIDYLHRTGRTARMG--AKGKVTSLVAKKDVLLADRI 314 (323)
Q Consensus 276 ~-----p~s~~~~~Q~~GR~~R~~--~~g~~~~~~~~~~~~~~~~i 314 (323)
+ +.+.-+|.|++||+||.| ..|.++.++...|......+
T Consensus 574 P~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~l 619 (1008)
T KOG0950|consen 574 PYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVREL 619 (1008)
T ss_pred CccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHHH
Confidence 3 348889999999999998 57899999999887555433
|
|
| >KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-20 Score=166.59 Aligned_cols=273 Identities=18% Similarity=0.268 Sum_probs=191.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcc-------------ccccCCCCCEEEeChHHHHHHHH
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ-------------EDSLNNPIDMVVGTPGRILQHIE 83 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~Iii~Tp~~l~~~~~ 83 (323)
...+||||| ..++.||.+++..|++.. ++..+++....... .+....+..|+++|++.|.-.
T Consensus 255 ~~paLIVCP-~Tii~qW~~E~~~w~p~~--rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~-- 329 (923)
T KOG0387|consen 255 TKPALIVCP-ATIIHQWMKEFQTWWPPF--RVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ-- 329 (923)
T ss_pred cCceEEEcc-HHHHHHHHHHHHHhCcce--EEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--
Confidence 368999999 567899999999998855 66667665542110 111223457999999876532
Q ss_pred cCCCCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecch-hhHHHHH-------------
Q 047490 84 DGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTK-AVQKLVD------------- 149 (323)
Q Consensus 84 ~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~-~~~~~~~------------- 149 (323)
...+.-..|+++|+||.|++-+. .......+..++.. +.|.+|+||.. .+.++..
T Consensus 330 ~d~l~~~~W~y~ILDEGH~IrNp--ns~islackki~T~---------~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~ 398 (923)
T KOG0387|consen 330 GDDLLGILWDYVILDEGHRIRNP--NSKISLACKKIRTV---------HRIILSGTPIQNNLTELWSLFDFVFPGKLGTL 398 (923)
T ss_pred CcccccccccEEEecCcccccCC--ccHHHHHHHhcccc---------ceEEeeCccccchHHHHHHHhhhccCCcccch
Confidence 22344567999999999998653 35556666666654 78888888753 2222110
Q ss_pred ----------------------------------------------------------------------------HH--
Q 047490 150 ----------------------------------------------------------------------------EE-- 151 (323)
Q Consensus 150 ----------------------------------------------------------------------------~~-- 151 (323)
++
T Consensus 399 ~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~ 478 (923)
T KOG0387|consen 399 PVFQQNFEHPINRGGYANASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLN 478 (923)
T ss_pred HHHHhhhhhheeccccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhh
Confidence 00
Q ss_pred ------------------------hcCceeeeccccccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecC
Q 047490 152 ------------------------CQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNT 207 (323)
Q Consensus 152 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~ 207 (323)
|.++.-+.... ... .....+........|+..+..++..+..+|.++|+|.++
T Consensus 479 s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~~~--~~~-~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs 555 (923)
T KOG0387|consen 479 SSEVNKILNGKRNCLSGIDILRKICNHPDLLDRRD--EDE-KQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQS 555 (923)
T ss_pred hHHHHHHHcCCccceechHHHHhhcCCcccccCcc--ccc-ccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhH
Confidence 00000000000 000 000000001112358889999998888899999999999
Q ss_pred cccHHHHHHHHh-hCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhh
Q 047490 208 LNSSRAVDHFLN-ENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLH 285 (323)
Q Consensus 208 ~~~~~~l~~~l~-~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q 285 (323)
+....-+-.+|. ..++...-+.|..+...|..++++|++++...-+|++|.+.+-|+|+ .++.||+||+.||+.+-.|
T Consensus 556 ~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~Q 635 (923)
T KOG0387|consen 556 RQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQ 635 (923)
T ss_pred HHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchH
Confidence 999999999998 68999999999999999999999999855555678999999999999 9999999999999999999
Q ss_pred hhcccccCCCcce--EEEEeeCCcH
Q 047490 286 RTGRTARMGAKGK--VTSLVAKKDV 308 (323)
Q Consensus 286 ~~GR~~R~~~~g~--~~~~~~~~~~ 308 (323)
+.-|+.|.|++.. +|-+++....
T Consensus 636 AreRawRiGQkkdV~VYRL~t~gTI 660 (923)
T KOG0387|consen 636 ARERAWRIGQKKDVVVYRLMTAGTI 660 (923)
T ss_pred HHHHHHhhcCccceEEEEEecCCcH
Confidence 9999999997554 5555555433
|
|
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.9e-21 Score=178.20 Aligned_cols=287 Identities=19% Similarity=0.227 Sum_probs=183.5
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcc--------cccc-C-----CCCCEEEeChHHHHH
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ--------EDSL-N-----NPIDMVVGTPGRILQ 80 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~-~-----~~~~Iii~Tp~~l~~ 80 (323)
....+++++.|+++++++++++++.+....+......++....... .... . .-..+.++||.....
T Consensus 244 ~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~ 323 (733)
T COG1203 244 KLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILI 323 (733)
T ss_pred cccceEEEEccHHHHHHHHHHHHHhhhcccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhh
Confidence 3578999999999999999999999887654443322332221100 0000 0 012455556554444
Q ss_pred HHHcCC-CC-C--CCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCce
Q 047490 81 HIEDGN-MV-Y--GDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIA 156 (323)
Q Consensus 81 ~~~~~~-~~-~--~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~ 156 (323)
...... .. + =....+|+||+|.+........+..++..+... +.+++++|||+|+...+.+........
T Consensus 324 ~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~~~~~l~~~i~~l~~~-------g~~ill~SATlP~~~~~~l~~~~~~~~ 396 (733)
T COG1203 324 FSVKGFKFEFLALLLTSLVILDEVHLYADETMLAALLALLEALAEA-------GVPVLLMSATLPPFLKEKLKKALGKGR 396 (733)
T ss_pred hhccccchHHHHHHHhhchhhccHHhhcccchHHHHHHHHHHHHhC-------CCCEEEEecCCCHHHHHHHHHHHhccc
Confidence 211111 11 1 124689999999887654333344444444332 348999999999999988887765543
Q ss_pred eeeccccccccccceeeEEeccCChh-HH---HHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCC
Q 047490 157 HLRTSTLHKKIASARHDFIKLSGSEN-KL---EALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEV 232 (323)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~-k~---~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 232 (323)
....... ..+.............+ +. ...........+.+.+++|.|||+..|.++++.|+..+..+..+||.+
T Consensus 397 ~~~~~~~--~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf 474 (733)
T COG1203 397 EVVENAK--FCPKEDEPGLKRKERVDVEDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRF 474 (733)
T ss_pred ceecccc--ccccccccccccccchhhhhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 3222111 00011111111110000 11 134444444556789999999999999999999998877899999999
Q ss_pred CHHHHHHHHHhccc--cCCCCCEEEEecccccccCCCCCEEEEcCCCCCchhhhhhhcccccCC--CcceEEEEeeCCcH
Q 047490 233 PAQERVENLNKFKN--EDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMG--AKGKVTSLVAKKDV 308 (323)
Q Consensus 233 ~~~~r~~~~~~f~~--~~g~~~ilv~t~~~~~Gid~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~--~~g~~~~~~~~~~~ 308 (323)
...+|.+.+++..+ ..+...|+|||++.+.|+|++++.+|--- ...+..+||+||++|.| ..|.++++......
T Consensus 475 ~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDidfd~mITe~--aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~ 552 (733)
T COG1203 475 TLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDIDFDVLITEL--APIDSLIQRAGRVNRHGKKENGKIYVYNDEERG 552 (733)
T ss_pred chhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccccCeeeecC--CCHHHHHHHHHHHhhcccccCCceeEeecccCC
Confidence 99999888775442 12556699999999999999999777644 44777899999999999 57788877775544
Q ss_pred HHHH
Q 047490 309 LLAD 312 (323)
Q Consensus 309 ~~~~ 312 (323)
....
T Consensus 553 ~~~~ 556 (733)
T COG1203 553 PYLK 556 (733)
T ss_pred Cchh
Confidence 3333
|
|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.3e-19 Score=165.16 Aligned_cols=127 Identities=24% Similarity=0.294 Sum_probs=105.1
Q ss_pred ChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc
Q 047490 180 SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL 259 (323)
Q Consensus 180 ~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~ 259 (323)
...|..++.+.+.+....++|+||-|.+....+.++..|...+++..+++..-...+-.-+-+.-+. |. |.|||+.
T Consensus 550 ~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~~~Ea~iia~AG~~--g~--VTIATNm 625 (970)
T PRK12899 550 EREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNHAQEAEIIAGAGKL--GA--VTVATNM 625 (970)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchhhhHHHHHHhcCCC--Cc--EEEeecc
Confidence 3568888888777766789999999999999999999999999998888887554444444444443 55 8999999
Q ss_pred cccccCCCCC---------EEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHH
Q 047490 260 AARGLDLDVD---------HVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310 (323)
Q Consensus 260 ~~~Gid~~~~---------~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~ 310 (323)
+++|.|+.+. +||....|.|.+...|..||+||.|.+|.+..+++..|.-.
T Consensus 626 AGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~lSlEDdL~ 685 (970)
T PRK12899 626 AGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFLSFEDRLM 685 (970)
T ss_pred ccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEEEcchHHH
Confidence 9999998322 79999999999999999999999999999999999876543
|
|
| >KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-19 Score=163.68 Aligned_cols=125 Identities=16% Similarity=0.162 Sum_probs=87.5
Q ss_pred hhhhccccCCCCccEEEEcCCHHHHHHHHHHHHHhcccc-ceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHc
Q 047490 6 EAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHA-RFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIED 84 (323)
Q Consensus 6 ~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~ 84 (323)
-+|-+++..+....+|++.|+++|++|+...+...+... -.+...+.|....+.... .-+|+|+|+-|+.+..++..
T Consensus 545 Y~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLls 622 (1330)
T KOG0949|consen 545 YAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLS 622 (1330)
T ss_pred HHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcC
Confidence 356667777788899999999999999999998877322 234444455443333222 22489999999999888766
Q ss_pred ---CCCCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecch
Q 047490 85 ---GNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTK 142 (323)
Q Consensus 85 ---~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~ 142 (323)
...+.+.++++|+||+|.+....-+--...++.-+ +.+++++|||..+
T Consensus 623 pp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li----------~CP~L~LSATigN 673 (1330)
T KOG0949|consen 623 PPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI----------PCPFLVLSATIGN 673 (1330)
T ss_pred chhhhhhhhcceEEEechhhhccccccchHHHHHHHhc----------CCCeeEEecccCC
Confidence 34557889999999999987654332233333222 2389999999864
|
|
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.8e-19 Score=164.49 Aligned_cols=272 Identities=16% Similarity=0.233 Sum_probs=181.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEe
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLV 96 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vI 96 (323)
+..+.+.-|.+--|..+++++.+.... +++...|-... .......+..|-++|.+.|.+.+.... .++.+++||
T Consensus 94 ~g~I~~tQPRRlAArsvA~RvAeel~~---~~G~~VGY~iR--fe~~~s~~Trik~mTdGiLlrei~~D~-~Ls~ys~vI 167 (845)
T COG1643 94 AGKIGCTQPRRLAARSVAERVAEELGE---KLGETVGYSIR--FESKVSPRTRIKVMTDGILLREIQNDP-LLSGYSVVI 167 (845)
T ss_pred CCeEEecCchHHHHHHHHHHHHHHhCC---CcCceeeEEEE--eeccCCCCceeEEeccHHHHHHHhhCc-ccccCCEEE
Confidence 457888889887777777777665433 22222221111 011123346899999999999888644 489999999
Q ss_pred ecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEe
Q 047490 97 LDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIK 176 (323)
Q Consensus 97 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (323)
+||+|+ ..-...-++..++...+.. +.++++|.||||+..+... .++.+...+... .....+..+|..
T Consensus 168 iDEaHE-----RSl~tDilLgllk~~~~~r-r~DLKiIimSATld~~rfs---~~f~~apvi~i~---GR~fPVei~Y~~ 235 (845)
T COG1643 168 IDEAHE-----RSLNTDILLGLLKDLLARR-RDDLKLIIMSATLDAERFS---AYFGNAPVIEIE---GRTYPVEIRYLP 235 (845)
T ss_pred Ecchhh-----hhHHHHHHHHHHHHHHhhc-CCCceEEEEecccCHHHHH---HHcCCCCEEEec---CCccceEEEecC
Confidence 999994 3333333333333311111 1247999999999754332 333322222221 112222333323
Q ss_pred ccCChh-HHHHHHHHhccCC-CCCCeEEEEecCcccHHHHHHHHhh----CCCeeEEecCCCCHHHHHHHHHhccccCCC
Q 047490 177 LSGSEN-KLEALLQVLEPSL-SKGNKVMVFCNTLNSSRAVDHFLNE----NQISTVNYHGEVPAQERVENLNKFKNEDGD 250 (323)
Q Consensus 177 ~~~~~~-k~~~l~~~l~~~~-~~~~~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~ 250 (323)
....+. -...+...+.... +..+.+|||.+...+.+..++.|++ ....+..+||.++.+++..+.+--.. |+
T Consensus 236 ~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~--~~ 313 (845)
T COG1643 236 EAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPG--GK 313 (845)
T ss_pred CCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCC--Cc
Confidence 332333 3344444443332 3568999999999999999999997 35788899999999999886666655 66
Q ss_pred CCEEEEecccccccCC-CCCEEEEcCC------------------CCCchhhhhhhcccccCCCcceEEEEeeCCcHH
Q 047490 251 CPTLVCTDLAARGLDL-DVDHVIMFDF------------------PLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309 (323)
Q Consensus 251 ~~ilv~t~~~~~Gid~-~~~~vi~~~~------------------p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 309 (323)
.+|+++|+++++++.+ ++..||..|. |-|.+...||.||+||. .+|.||-+++..+..
T Consensus 314 RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~-~pGicyRLyse~~~~ 390 (845)
T COG1643 314 RKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRT-GPGICYRLYSEEDFL 390 (845)
T ss_pred ceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccC-CCceEEEecCHHHHH
Confidence 7799999999999999 9999998765 33777889999999999 599999999975543
|
|
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-19 Score=135.50 Aligned_cols=120 Identities=40% Similarity=0.693 Sum_probs=110.9
Q ss_pred hhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEeccc
Q 047490 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLA 260 (323)
Q Consensus 181 ~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~ 260 (323)
+.|...+.+.+....+.++++||||++...++.+++.|++.+.++..+||+++..++..+.+.|++ +...++++|+.+
T Consensus 11 ~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~--~~~~ili~t~~~ 88 (131)
T cd00079 11 DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFRE--GEIVVLVATDVI 88 (131)
T ss_pred HHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHc--CCCcEEEEcChh
Confidence 368888888888765567899999999999999999999888899999999999999999999999 889999999999
Q ss_pred ccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEE
Q 047490 261 ARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302 (323)
Q Consensus 261 ~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~ 302 (323)
++|+|+ .+++||++++|++...+.|++||++|.|+.|.++++
T Consensus 89 ~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 89 ARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 999999 899999999999999999999999999998887653
|
|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-19 Score=165.47 Aligned_cols=135 Identities=27% Similarity=0.428 Sum_probs=124.1
Q ss_pred ChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc
Q 047490 180 SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL 259 (323)
Q Consensus 180 ~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~ 259 (323)
...++..+++.+......+.+++|||++.+.++.+++.|.+.++.+..+||+++..+|.++++.|+. |++.|+|||+.
T Consensus 424 ~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~--G~i~VLV~t~~ 501 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRL--GEFDVLVGINL 501 (655)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhc--CCceEEEEcCh
Confidence 4457778888887776788999999999999999999999999999999999999999999999999 99999999999
Q ss_pred cccccCC-CCCEEEEcC-----CCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHH
Q 047490 260 AARGLDL-DVDHVIMFD-----FPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317 (323)
Q Consensus 260 ~~~Gid~-~~~~vi~~~-----~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~ 317 (323)
+.+|+|+ ++++|++++ .|.+...|+|++||+||. ..|.++++.+..+....+.|.+.
T Consensus 502 L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai~~~ 564 (655)
T TIGR00631 502 LREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAIEET 564 (655)
T ss_pred hcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHHHHH
Confidence 9999999 999999987 799999999999999998 68999999999888888888776
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-17 Score=146.74 Aligned_cols=268 Identities=18% Similarity=0.209 Sum_probs=173.1
Q ss_pred cEEEEcCCHHHHHHHHHHHHHh-ccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEee
Q 047490 19 RAVVLCPTRELSEQVFRVAKSI-SHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVL 97 (323)
Q Consensus 19 ~~lvl~P~~~L~~q~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vIi 97 (323)
.+-|--|.|--|.-++++..+- ....|-.++...--.+.. .....|.+.|-+.|++-+.... .++.+++||+
T Consensus 97 ~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IRFed~t------s~~TrikymTDG~LLRE~l~Dp-~LskYsvIIl 169 (674)
T KOG0922|consen 97 KIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIRFEDST------SKDTRIKYMTDGMLLREILKDP-LLSKYSVIIL 169 (674)
T ss_pred cEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEEecccC------CCceeEEEecchHHHHHHhcCC-ccccccEEEE
Confidence 3777788887666666555443 222333333222111111 1235799999999988766543 4889999999
Q ss_pred cchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEec
Q 047490 98 DEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL 177 (323)
Q Consensus 98 DE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (323)
||||. +.-+..-++..++....+. .++++|++|||+.-+. +..++.+...+... .....+...|...
T Consensus 170 DEAHE-----Rsl~TDiLlGlLKki~~~R--~~LklIimSATlda~k---fS~yF~~a~i~~i~---GR~fPVei~y~~~ 236 (674)
T KOG0922|consen 170 DEAHE-----RSLHTDILLGLLKKILKKR--PDLKLIIMSATLDAEK---FSEYFNNAPILTIP---GRTFPVEILYLKE 236 (674)
T ss_pred echhh-----hhhHHHHHHHHHHHHHhcC--CCceEEEEeeeecHHH---HHHHhcCCceEeec---CCCCceeEEeccC
Confidence 99993 3333333333333332222 3579999999997332 22333332222221 1222233333332
Q ss_pred cCChhHHHHHHHHhccCC-CCCCeEEEEecCcccHHHHHHHHhhC----C----CeeEEecCCCCHHHHHHHHHhccccC
Q 047490 178 SGSENKLEALLQVLEPSL-SKGNKVMVFCNTLNSSRAVDHFLNEN----Q----ISTVNYHGEVPAQERVENLNKFKNED 248 (323)
Q Consensus 178 ~~~~~k~~~l~~~l~~~~-~~~~~~lvf~~~~~~~~~l~~~l~~~----~----~~~~~~~~~~~~~~r~~~~~~f~~~~ 248 (323)
+..+.-...+..+++-+. ++++-+|||.+..++.+.+++.|.+. + .-+..+||.++.+++..+.+--..
T Consensus 237 p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~-- 314 (674)
T KOG0922|consen 237 PTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPP-- 314 (674)
T ss_pred CchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCC--
Confidence 322322233333332221 46679999999999999999988764 1 124579999999998877665555
Q ss_pred CCCCEEEEecccccccCC-CCCEEEEcCC------------------CCCchhhhhhhcccccCCCcceEEEEeeCCcHH
Q 047490 249 GDCPTLVCTDLAARGLDL-DVDHVIMFDF------------------PLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309 (323)
Q Consensus 249 g~~~ilv~t~~~~~Gid~-~~~~vi~~~~------------------p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 309 (323)
|..+|+++|++++..+.+ .+..||..|. |-|...-.||.||+||.| +|+|+-+++..+..
T Consensus 315 g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~~ 393 (674)
T KOG0922|consen 315 GKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAYD 393 (674)
T ss_pred CcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHHh
Confidence 999999999999999999 9999998764 347778899999999994 99999999987664
|
|
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=3e-18 Score=154.12 Aligned_cols=292 Identities=16% Similarity=0.158 Sum_probs=197.6
Q ss_pred hhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHH-HHHHHcC-
Q 047490 8 MLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI-LQHIEDG- 85 (323)
Q Consensus 8 ~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l-~~~~~~~- 85 (323)
+...+..-.|..+-+++|+..||.|-++++..++..+|+++..+.++.........+ .++|.++|...| +++++.+
T Consensus 110 l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~~ly~~LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm 187 (764)
T PRK12326 110 IAAAGYALQGRRVHVITVNDYLARRDAEWMGPLYEALGLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQL 187 (764)
T ss_pred HHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHHHhcCCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhh
Confidence 333344455778999999999999999999999999999999998876655444434 369999999887 4444443
Q ss_pred -----CCCCCCCcEEeecchhhhhcCC---------------ChhhHHHHHhhhcc------------------------
Q 047490 86 -----NMVYGDIKYLVLDEADTMFDRG---------------FGPDIRKFLVPLKN------------------------ 121 (323)
Q Consensus 86 -----~~~~~~~~~vIiDE~h~~~~~~---------------~~~~~~~i~~~~~~------------------------ 121 (323)
....+.+.+.|+||+|.++=.+ ....+..+...+..
T Consensus 188 ~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e 267 (764)
T PRK12326 188 VTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVE 267 (764)
T ss_pred ccChHhhcCCccceeeecchhhheeccccCceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHH
Confidence 2235668899999999954100 00001111111100
Q ss_pred ---------------------------ccCCCCCCC--------------------------------------------
Q 047490 122 ---------------------------RASKPNGQG-------------------------------------------- 130 (323)
Q Consensus 122 ---------------------------~~~~~~~~~-------------------------------------------- 130 (323)
......+.+
T Consensus 268 ~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~ 347 (764)
T PRK12326 268 KALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETG 347 (764)
T ss_pred HHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCc
Confidence 000000000
Q ss_pred ---------------ceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEeccCChhHHHHHHHHhccCC
Q 047490 131 ---------------FQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195 (323)
Q Consensus 131 ---------------~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~ 195 (323)
.++.+||+|......++.+-+......++.-............| .....|..++.+.+.+..
T Consensus 348 ~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~iy---~t~~~k~~Aii~ei~~~~ 424 (764)
T PRK12326 348 EVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDLGVSVIPPNKPNIREDEADRVY---ATAAEKNDAIVEHIAEVH 424 (764)
T ss_pred eeeehhhHHHHHHhcchheeecCCChhHHHHHHHHhCCcEEECCCCCCceeecCCCceE---eCHHHHHHHHHHHHHHHH
Confidence 15677777776555544443333333222211111111111111 224668888888887766
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCCCCC------
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLDVD------ 269 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~~~~------ 269 (323)
..|.|+||.|.+....+.+.+.|.+.+++..++++.-...+-+-+-+.-+. |. |.|||+.+++|.|+.+.
T Consensus 425 ~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~~~EA~IIa~AG~~--ga--VTIATNMAGRGTDIkLg~~~~~~ 500 (764)
T PRK12326 425 ETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKNDAEEARIIAEAGKY--GA--VTVSTQMAGRGTDIRLGGSDEAD 500 (764)
T ss_pred HcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCchHhHHHHHHhcCCC--Cc--EEEEecCCCCccCeecCCCcccc
Confidence 789999999999999999999999999999999887655554444444444 55 89999999999998332
Q ss_pred ----------EEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcH
Q 047490 270 ----------HVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308 (323)
Q Consensus 270 ----------~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~ 308 (323)
+||-...+.|.+.-.|..||+||.|.+|.+..+++..|.
T Consensus 501 ~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~lSleDd 549 (764)
T PRK12326 501 RDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLEDD 549 (764)
T ss_pred hHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEEEEcchh
Confidence 799999999999999999999999999999999997665
|
|
| >KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.6e-17 Score=148.60 Aligned_cols=283 Identities=16% Similarity=0.139 Sum_probs=175.9
Q ss_pred hhccccCCCC-----ccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccC--CccccccC-----CCCCEEEeCh
Q 047490 8 MLGVLMKPRR-----PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRL--RPQEDSLN-----NPIDMVVGTP 75 (323)
Q Consensus 8 ~~~~~~~~~~-----~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----~~~~Iii~Tp 75 (323)
|...+...++ .+.||++| ..|+..|.+++.+|.....+....+++.... ......+. -...|++.++
T Consensus 284 lwtlLrq~P~~~~~~~k~lVV~P-~sLv~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sy 362 (776)
T KOG0390|consen 284 IWTLLRQFPQAKPLINKPLVVAP-SSLVNNWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISY 362 (776)
T ss_pred HHHHHHhCcCccccccccEEEcc-HHHHHHHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccH
Confidence 4445566677 89999999 6788999999999987666777777777553 00111111 1135889999
Q ss_pred HHHHHHHHcCCCCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecch-hhHHHHH-----
Q 047490 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTK-AVQKLVD----- 149 (323)
Q Consensus 76 ~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~-~~~~~~~----- 149 (323)
+.+.+.+.. +....++++|+||.|++-+ -...+...+..+... +.|++|+||-. ...+...
T Consensus 363 e~~~~~~~~--il~~~~glLVcDEGHrlkN--~~s~~~kaL~~l~t~---------rRVLLSGTp~QNdl~EyFnlL~fv 429 (776)
T KOG0390|consen 363 ETASDYCRK--ILLIRPGLLVCDEGHRLKN--SDSLTLKALSSLKTP---------RRVLLTGTPIQNDLKEYFNLLDFV 429 (776)
T ss_pred HHHHHHHHH--HhcCCCCeEEECCCCCccc--hhhHHHHHHHhcCCC---------ceEEeeCCcccccHHHHHHHHhhc
Confidence 999866654 4466889999999998754 335566666666544 78999999843 1111110
Q ss_pred ------------------------------------------HHhcCceeeecc-ccccccccceeeEEeccCC------
Q 047490 150 ------------------------------------------EECQGIAHLRTS-TLHKKIASARHDFIKLSGS------ 180 (323)
Q Consensus 150 ------------------------------------------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------ 180 (323)
.....+...+.. ......|....+.+.+...
T Consensus 430 rP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~ 509 (776)
T KOG0390|consen 430 RPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKEL 509 (776)
T ss_pred ChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHH
Confidence 000000000000 0011111111221111111
Q ss_pred -------------------------------------------------------------------hhHHHHHHHHhcc
Q 047490 181 -------------------------------------------------------------------ENKLEALLQVLEP 193 (323)
Q Consensus 181 -------------------------------------------------------------------~~k~~~l~~~l~~ 193 (323)
..|+..|..++..
T Consensus 510 ~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~ 589 (776)
T KOG0390|consen 510 YKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEV 589 (776)
T ss_pred HHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHH
Confidence 1122333333211
Q ss_pred CCCCCCeEEEEecCcccHHHH-HHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCC-EEEEecccccccCC-CCCE
Q 047490 194 SLSKGNKVMVFCNTLNSSRAV-DHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP-TLVCTDLAARGLDL-DVDH 270 (323)
Q Consensus 194 ~~~~~~~~lvf~~~~~~~~~l-~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~-ilv~t~~~~~Gid~-~~~~ 270 (323)
..+...--.+++.+.+....+ .+.++-.|..+..+||.|+..+|+.+++.|+.+++.-. .|.++.+++.|+|+ .++.
T Consensus 590 ~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsR 669 (776)
T KOG0390|consen 590 IREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASR 669 (776)
T ss_pred HhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccce
Confidence 111111112333333333333 33344459999999999999999999999999766634 56667899999999 9999
Q ss_pred EEEcCCCCCchhhhhhhcccccCCCcceEEEEee
Q 047490 271 VIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304 (323)
Q Consensus 271 vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~ 304 (323)
||.+|++||++.-.|+++|+.|.|++-.|+++--
T Consensus 670 lil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrL 703 (776)
T KOG0390|consen 670 LILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRL 703 (776)
T ss_pred EEEeCCCCCchhHHHHHHHhccCCCcceEEEEEe
Confidence 9999999999999999999999998776655543
|
|
| >KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-18 Score=161.48 Aligned_cols=111 Identities=26% Similarity=0.432 Sum_probs=101.6
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccC-CCCCEEEEecccccccCC-CCCEEEE
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNED-GDCPTLVCTDLAARGLDL-DVDHVIM 273 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-g~~~ilv~t~~~~~Gid~-~~~~vi~ 273 (323)
+.|.++|||.+-+....-|+++|...+++.--+.|.+..+.|+..++.|+.++ ..+.+|+||.+.+.|||+ .+++||+
T Consensus 697 ~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVII 776 (1373)
T KOG0384|consen 697 EGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVII 776 (1373)
T ss_pred cCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEE
Confidence 57789999999999999999999999999999999999999999999999853 456789999999999999 9999999
Q ss_pred cCCCCCchhhhhhhcccccCCCcc--eEEEEeeCC
Q 047490 274 FDFPLNSIDYLHRTGRTARMGAKG--KVTSLVAKK 306 (323)
Q Consensus 274 ~~~p~s~~~~~Q~~GR~~R~~~~g--~~~~~~~~~ 306 (323)
||..||+..-.|+..||+|.|++. .+|-|++..
T Consensus 777 FDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 777 FDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKN 811 (1373)
T ss_pred eCCCCCcchHHHHHHHHHhhcccceEEEEEEecCC
Confidence 999999999999999999999755 567777764
|
|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-17 Score=150.89 Aligned_cols=279 Identities=19% Similarity=0.247 Sum_probs=187.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCCCCCC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMVYGDI 92 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~~~~~ 92 (323)
|..+|+|+|-.+|..|+.+.++..+. .++..++++....+....| .+...|+|+|-..++ ..++++
T Consensus 245 GkqvLvLVPEI~Ltpq~~~rf~~rFg---~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-------~Pf~~L 314 (730)
T COG1198 245 GKQVLVLVPEIALTPQLLARFKARFG---AKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF-------LPFKNL 314 (730)
T ss_pred CCEEEEEeccccchHHHHHHHHHHhC---CChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc-------Cchhhc
Confidence 68999999999999999999999875 5888888887765543333 467899999943332 347899
Q ss_pred cEEeecchhhhhc---CCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccccccccc
Q 047490 93 KYLVLDEADTMFD---RGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIAS 169 (323)
Q Consensus 93 ~~vIiDE~h~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (323)
.+||+||=|--.- .+..-+.+.+....... .+.++|+-||||+-+........ .+..+...........
T Consensus 315 GLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~------~~~pvvLgSATPSLES~~~~~~g--~y~~~~L~~R~~~a~~ 386 (730)
T COG1198 315 GLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKK------ENAPVVLGSATPSLESYANAESG--KYKLLRLTNRAGRARL 386 (730)
T ss_pred cEEEEeccccccccCCcCCCcCHHHHHHHHHHH------hCCCEEEecCCCCHHHHHhhhcC--ceEEEEccccccccCC
Confidence 9999999996432 12233444443322221 13489999999986665544322 2223332222222222
Q ss_pred ceeeEEeccCChhHH-----HHHHHHhccCCCCCCeEEEEecCcccHH--------------------------------
Q 047490 170 ARHDFIKLSGSENKL-----EALLQVLEPSLSKGNKVMVFCNTLNSSR-------------------------------- 212 (323)
Q Consensus 170 ~~~~~~~~~~~~~k~-----~~l~~~l~~~~~~~~~~lvf~~~~~~~~-------------------------------- 212 (323)
.....++......+. ..|++.+++.++.++++|+|.|.+..+-
T Consensus 387 p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH 466 (730)
T COG1198 387 PRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCH 466 (730)
T ss_pred CcceEEeccccccccCccCCHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeC
Confidence 333344444333332 6778888888889999999999966432
Q ss_pred ----------------------------HHHHHHhhC--CCeeEEecCCCCH--HHHHHHHHhccccCCCCCEEEEeccc
Q 047490 213 ----------------------------AVDHFLNEN--QISTVNYHGEVPA--QERVENLNKFKNEDGDCPTLVCTDLA 260 (323)
Q Consensus 213 ----------------------------~l~~~l~~~--~~~~~~~~~~~~~--~~r~~~~~~f~~~~g~~~ilv~t~~~ 260 (323)
++.+.|+.. +.++..+.++... ..-+..+..|.+ |+.+|||.|+.+
T Consensus 467 ~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~--ge~dILiGTQmi 544 (730)
T COG1198 467 YCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFAN--GEADILIGTQMI 544 (730)
T ss_pred CCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhC--CCCCeeecchhh
Confidence 222222222 3344445555443 234677999999 999999999999
Q ss_pred ccccCC-CCCEEEEcCCCC------------CchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHH
Q 047490 261 ARGLDL-DVDHVIMFDFPL------------NSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIE 315 (323)
Q Consensus 261 ~~Gid~-~~~~vi~~~~p~------------s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~ 315 (323)
..|.|+ +++.|...+... ....+.|-.||+||.+.+|.+++-.-.+|...++.+.
T Consensus 545 aKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~ 612 (730)
T COG1198 545 AKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQALK 612 (730)
T ss_pred hcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHHHH
Confidence 999999 999887765432 3444679999999999999999888888876665543
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.3e-17 Score=148.16 Aligned_cols=246 Identities=18% Similarity=0.289 Sum_probs=161.5
Q ss_pred cCCCCccEEEEcCCHHHHHHHHHHHHHhccccc-eeEEE-eecCccCCccc----cccCCCCCEEEeChHHHHHHHHcCC
Q 047490 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHAR-FRSTM-VSGGGRLRPQE----DSLNNPIDMVVGTPGRILQHIEDGN 86 (323)
Q Consensus 13 ~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~----~~~~~~~~Iii~Tp~~l~~~~~~~~ 86 (323)
-..++.++++++||..|+.|+.+.++++....+ ..+.. .++........ +...++++|+|+|.+-+.+-+..-
T Consensus 121 ~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L- 199 (1187)
T COG1110 121 LAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEEL- 199 (1187)
T ss_pred HHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHh-
Confidence 344568999999999999999999999987765 44444 34433332222 223567999999988776555432
Q ss_pred CCCCCCcEEeecchhhhhcCC-----------Chhh-------HHHHHhhhc----------------cccCCCCCCCce
Q 047490 87 MVYGDIKYLVLDEADTMFDRG-----------FGPD-------IRKFLVPLK----------------NRASKPNGQGFQ 132 (323)
Q Consensus 87 ~~~~~~~~vIiDE~h~~~~~~-----------~~~~-------~~~i~~~~~----------------~~~~~~~~~~~~ 132 (323)
..-++++|++|++|.++..+ |... +..+...+. ..........=+
T Consensus 200 -~~~kFdfifVDDVDA~LkaskNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~ 278 (1187)
T COG1110 200 -SKLKFDFIFVDDVDAILKASKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGI 278 (1187)
T ss_pred -cccCCCEEEEccHHHHHhccccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCce
Confidence 12478999999999976432 2221 001111111 000000111238
Q ss_pred EEEEEeecchhh-HHHHHHHhcCceeeeccccccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecC---c
Q 047490 133 TVLVSATMTKAV-QKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNT---L 208 (323)
Q Consensus 133 ~i~~sat~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~---~ 208 (323)
+++.|||..+.- .-.+-+.+.++.. +.......++...+... . -.+.+.++++.. |.-.|||++. +
T Consensus 279 LvvsSATg~~rg~R~~LfReLlgFev---G~~~~~LRNIvD~y~~~-~---~~e~~~elvk~l---G~GgLIfV~~d~G~ 348 (1187)
T COG1110 279 LVVSSATGKPRGSRLKLFRELLGFEV---GSGGEGLRNIVDIYVES-E---SLEKVVELVKKL---GDGGLIFVPIDYGR 348 (1187)
T ss_pred EEEeeccCCCCCchHHHHHHHhCCcc---CccchhhhheeeeeccC-c---cHHHHHHHHHHh---CCCeEEEEEcHHhH
Confidence 999999985433 3334444444432 22334445555555444 3 334444444432 3366999999 9
Q ss_pred ccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEec----ccccccCC--CCCEEEEcCCC
Q 047490 209 NSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD----LAARGLDL--DVDHVIMFDFP 277 (323)
Q Consensus 209 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~----~~~~Gid~--~~~~vi~~~~p 277 (323)
+.++++++.|+..|+.+..+|+. .++.++.|.+ |++++||++. .+.+|+|+ .+..+|++|.|
T Consensus 349 e~aeel~e~Lr~~Gi~a~~~~a~-----~~~~le~F~~--GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 349 EKAEELAEYLRSHGINAELIHAE-----KEEALEDFEE--GEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred HHHHHHHHHHHhcCceEEEeecc-----chhhhhhhcc--CceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 99999999999999999999984 2678999999 9999999864 78999999 59999999987
|
|
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-18 Score=117.06 Aligned_cols=77 Identities=39% Similarity=0.764 Sum_probs=73.9
Q ss_pred HHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCC
Q 047490 216 HFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMG 294 (323)
Q Consensus 216 ~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~ 294 (323)
++|+..++.+..+||++++.+|..+++.|+. +...+||||+.+++|+|+ .+++||++++|+|...|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~--~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNS--GEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHT--TSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhc--cCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 3678889999999999999999999999999 888999999999999999 9999999999999999999999999986
|
It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B .... |
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.3e-17 Score=151.94 Aligned_cols=291 Identities=15% Similarity=0.167 Sum_probs=197.2
Q ss_pred ccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHH-HHHHHcCC--
Q 047490 10 GVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI-LQHIEDGN-- 86 (323)
Q Consensus 10 ~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l-~~~~~~~~-- 86 (323)
..+..-.|..|-+++|+..||.|-++++..++..+|+++.++.++.........+. ++|+++|...| +++++.+.
T Consensus 116 a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~~~~ 193 (913)
T PRK13103 116 VYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDNMAF 193 (913)
T ss_pred HHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhcccee
Confidence 33444557789999999999999999999999999999999988766555444444 79999999887 55555432
Q ss_pred ----CCCCCCcEEeecchhhhhcCC----------------ChhhHHHHHhhhccc------------------------
Q 047490 87 ----MVYGDIKYLVLDEADTMFDRG----------------FGPDIRKFLVPLKNR------------------------ 122 (323)
Q Consensus 87 ----~~~~~~~~vIiDE~h~~~~~~----------------~~~~~~~i~~~~~~~------------------------ 122 (323)
...+.+.++|+||+|.++=++ ....+..++..+...
T Consensus 194 ~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~ 273 (913)
T PRK13103 194 SLDDKFQRELNFAVIDEVDSILIDEARTPLIISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVE 273 (913)
T ss_pred chhhhcccccceeEechhhheeccccCCceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeee
Confidence 234789999999999954100 000111111111000
Q ss_pred ------------c---------CCC-CCCC--------------------------------------------------
Q 047490 123 ------------A---------SKP-NGQG-------------------------------------------------- 130 (323)
Q Consensus 123 ------------~---------~~~-~~~~-------------------------------------------------- 130 (323)
. ... ...+
T Consensus 274 LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGL 353 (913)
T PRK13103 274 LNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGL 353 (913)
T ss_pred echHHHHHHHHHhhhCCCcccchhccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHH
Confidence 0 000 0000
Q ss_pred -------------------------------ceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEeccC
Q 047490 131 -------------------------------FQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSG 179 (323)
Q Consensus 131 -------------------------------~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (323)
.++.+||+|...+..++.+-+......++.-.......... .+ ...
T Consensus 354 HQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPTnkP~~R~D~~d--~v-y~t 430 (913)
T PRK13103 354 HQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLSGMTGTADTEAFEFRQIYGLDVVVIPPNKPLARKDFND--LV-YLT 430 (913)
T ss_pred HHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhccCCCCCHHHHHHHHHHhCCCEEECCCCCCcccccCCC--eE-EcC
Confidence 15566666665444444433333333322221111111111 12 223
Q ss_pred ChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc
Q 047490 180 SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL 259 (323)
Q Consensus 180 ~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~ 259 (323)
...|..++.+-+......|+|+||-+.+....+.++..|+..+++..+++......+-+-+.+.-+. |. |.|||+.
T Consensus 431 ~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa~AG~~--Ga--VTIATNM 506 (913)
T PRK13103 431 AEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYHEKEAEIIAQAGRP--GA--LTIATNM 506 (913)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccchhHHHHHHcCCCC--Cc--EEEeccC
Confidence 4678899988888777889999999999999999999999999888777776554454444444443 54 8999999
Q ss_pred cccccCCCCC--------------------------------------EEEEcCCCCCchhhhhhhcccccCCCcceEEE
Q 047490 260 AARGLDLDVD--------------------------------------HVIMFDFPLNSIDYLHRTGRTARMGAKGKVTS 301 (323)
Q Consensus 260 ~~~Gid~~~~--------------------------------------~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~ 301 (323)
+++|.|+.+. +||-...+.|.+.-.|..||+||.|.+|.+..
T Consensus 507 AGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f 586 (913)
T PRK13103 507 AGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRF 586 (913)
T ss_pred CCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEE
Confidence 9999998321 78888999999999999999999999999999
Q ss_pred EeeCCcHH
Q 047490 302 LVAKKDVL 309 (323)
Q Consensus 302 ~~~~~~~~ 309 (323)
+++..|.-
T Consensus 587 ~lSlED~L 594 (913)
T PRK13103 587 YLSLEDSL 594 (913)
T ss_pred EEEcCcHH
Confidence 99986653
|
|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-17 Score=134.24 Aligned_cols=134 Identities=39% Similarity=0.600 Sum_probs=113.5
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcE
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKY 94 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~ 94 (323)
.++++++|++|+++|+.|+.+.++.+....++.+..++|+.........+..+++|+|+||+.+..++.+....++++++
T Consensus 67 ~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~ 146 (203)
T cd00268 67 KDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKY 146 (203)
T ss_pred cCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCE
Confidence 36789999999999999999999999887788888888887765555555567899999999999999887778899999
Q ss_pred EeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCce
Q 047490 95 LVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIA 156 (323)
Q Consensus 95 vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~ 156 (323)
+|+||+|.+.+.++...+..+...+.. +.+++++|||+++.........+..+.
T Consensus 147 lIvDE~h~~~~~~~~~~~~~~~~~l~~--------~~~~~~~SAT~~~~~~~~~~~~~~~~~ 200 (203)
T cd00268 147 LVLDEADRMLDMGFEDQIREILKLLPK--------DRQTLLFSATMPKEVRDLARKFLRNPV 200 (203)
T ss_pred EEEeChHHhhccChHHHHHHHHHhCCc--------ccEEEEEeccCCHHHHHHHHHHCCCCE
Confidence 999999999887788888888877654 339999999999888887777766543
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.2e-17 Score=148.58 Aligned_cols=258 Identities=13% Similarity=0.144 Sum_probs=163.3
Q ss_pred cccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcC-----
Q 047490 11 VLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDG----- 85 (323)
Q Consensus 11 ~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~----- 85 (323)
++....-+++|+|+.+++|+.|.+..+..+.+.. -....+.+-.. ...++|.++|++++.......
T Consensus 209 L~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~-~~~n~i~~~~~--------~~s~~i~lsTyqt~~~~~~~~~~~~~ 279 (875)
T COG4096 209 LIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFG-TKMNKIEDKKG--------DTSSEIYLSTYQTMTGRIEQKEDEYR 279 (875)
T ss_pred HHhcchhheeeEEechHHHHHHHHHHHHHhCCCc-cceeeeecccC--------CcceeEEEeehHHHHhhhhccccccc
Confidence 3445666899999999999999999999998753 22222222211 114799999999998877654
Q ss_pred CCCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHh-cCceeeeccccc
Q 047490 86 NMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEEC-QGIAHLRTSTLH 164 (323)
Q Consensus 86 ~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~-~~~~~~~~~~~~ 164 (323)
.+....+++||+||||+- .......|+.++... .+++||||........-.+. ..+.........
T Consensus 280 ~f~~g~FDlIvIDEaHRg----i~~~~~~I~dYFdA~----------~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeA 345 (875)
T COG4096 280 RFGPGFFDLIVIDEAHRG----IYSEWSSILDYFDAA----------TQGLTATPKETIDRSTYGFFNGEPTYAYSLEEA 345 (875)
T ss_pred cCCCCceeEEEechhhhh----HHhhhHHHHHHHHHH----------HHhhccCcccccccccccccCCCcceeecHHHH
Confidence 244566999999999974 445556888888764 45569999764443332222 111111000000
Q ss_pred -----------------ccccc----------------c--eeeEEeccC------ChhHHH----HHHHHhcc--CCCC
Q 047490 165 -----------------KKIAS----------------A--RHDFIKLSG------SENKLE----ALLQVLEP--SLSK 197 (323)
Q Consensus 165 -----------------~~~~~----------------~--~~~~~~~~~------~~~k~~----~l~~~l~~--~~~~ 197 (323)
....+ + ..+.....+ -....+ .+.+.+.. .-..
T Consensus 346 V~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~ 425 (875)
T COG4096 346 VEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDE 425 (875)
T ss_pred hhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCc
Confidence 00000 0 000000000 001223 33344443 2122
Q ss_pred CCeEEEEecCcccHHHHHHHHhhC-----CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEE
Q 047490 198 GNKVMVFCNTLNSSRAVDHFLNEN-----QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHV 271 (323)
Q Consensus 198 ~~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~v 271 (323)
.+||||||.+..+|+.+.+.|.+. +--+..+.|+-.. . +..+..|...+.-.+|.++.+.+.+|+|+ .|.++
T Consensus 426 ~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~-~-q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nl 503 (875)
T COG4096 426 IGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQ-A-QALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNL 503 (875)
T ss_pred cCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchh-h-HHHHHHHHhcCCCCceEEehhhhhcCCCchheeee
Confidence 579999999999999999998764 3345556665432 2 33345554433455688999999999999 99999
Q ss_pred EEcCCCCCchhhhhhhcccccC
Q 047490 272 IMFDFPLNSIDYLHRTGRTARM 293 (323)
Q Consensus 272 i~~~~p~s~~~~~Q~~GR~~R~ 293 (323)
+++-.-.|...|.|++||+.|.
T Consensus 504 VF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 504 VFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred eehhhhhhHHHHHHHhcCcccc
Confidence 9999999999999999999994
|
|
| >KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.7e-17 Score=146.51 Aligned_cols=126 Identities=21% Similarity=0.336 Sum_probs=109.7
Q ss_pred HHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEeccccc
Q 047490 183 KLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAAR 262 (323)
Q Consensus 183 k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~ 262 (323)
|...|..+|-.....|.++|||.+......-+-..|...++....+.|...-..|+.++.+|..+..-.-+|++|.+.+.
T Consensus 762 K~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~ 841 (941)
T KOG0389|consen 762 KCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGF 841 (941)
T ss_pred hHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcc
Confidence 66667777766666889999999999988888888999999999999999999999999999985555567899999999
Q ss_pred ccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCc--ceEEEEeeCCcH
Q 047490 263 GLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAK--GKVTSLVAKKDV 308 (323)
Q Consensus 263 Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~--g~~~~~~~~~~~ 308 (323)
|||+ .+++||++|...|+.+-.|+-.|++|.|+. -.++-++++...
T Consensus 842 GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TI 890 (941)
T KOG0389|consen 842 GINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTI 890 (941)
T ss_pred eecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcH
Confidence 9999 999999999999999999999999999964 457777776543
|
|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.6e-17 Score=149.37 Aligned_cols=270 Identities=20% Similarity=0.309 Sum_probs=178.9
Q ss_pred EEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEeecc
Q 047490 20 AVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDE 99 (323)
Q Consensus 20 ~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vIiDE 99 (323)
+||+|| ..|+.-|..++.+|++. +++....|+-......+...++.+|||++++.+.+.+.. +.-.+|.|+|+||
T Consensus 1034 SLIVCP-sTLtGHW~~E~~kf~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDE 1108 (1549)
T KOG0392|consen 1034 SLIVCP-STLTGHWKSEVKKFFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDE 1108 (1549)
T ss_pred eEEECC-chhhhHHHHHHHHhcch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecC
Confidence 899999 56899999999999986 566666666443333333344579999999988654432 2234688999999
Q ss_pred hhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchh-hHHHHH-----------------------------
Q 047490 100 ADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKA-VQKLVD----------------------------- 149 (323)
Q Consensus 100 ~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~-~~~~~~----------------------------- 149 (323)
-|.+-+ -...+...+..+... +.+.+|+||..+ ..+...
T Consensus 1109 GHVikN--~ktkl~kavkqL~a~---------hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd 1177 (1549)
T KOG0392|consen 1109 GHVIKN--SKTKLTKAVKQLRAN---------HRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRD 1177 (1549)
T ss_pred cceecc--hHHHHHHHHHHHhhc---------ceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcC
Confidence 998755 345666667777654 678899998531 111100
Q ss_pred --------------------------------------------H---------------HhcC---ceeeecccccccc
Q 047490 150 --------------------------------------------E---------------ECQG---IAHLRTSTLHKKI 167 (323)
Q Consensus 150 --------------------------------------------~---------------~~~~---~~~~~~~~~~~~~ 167 (323)
. +... ......+......
T Consensus 1178 ~K~Sske~EaG~lAleaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~ 1257 (1549)
T KOG0392|consen 1178 PKSSSKEQEAGVLALEALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESL 1257 (1549)
T ss_pred cccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhcc
Confidence 0 0000 0000000000000
Q ss_pred c-cceeeE--------------Eecc-----------------------CChhHHHHHHHHhccCC-C------------
Q 047490 168 A-SARHDF--------------IKLS-----------------------GSENKLEALLQVLEPSL-S------------ 196 (323)
Q Consensus 168 ~-~~~~~~--------------~~~~-----------------------~~~~k~~~l~~~l~~~~-~------------ 196 (323)
. ...|.| ...+ ....|+.+|-++|.+.- .
T Consensus 1258 gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~ 1337 (1549)
T KOG0392|consen 1258 GTDKTHVFQALQYLRKLCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSD 1337 (1549)
T ss_pred CcchHHHHHHHHHHHHhcCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcch
Confidence 0 000000 0000 12347777777765531 0
Q ss_pred -CCCeEEEEecCcccHHHHHHHHh-hCCCeeE--EecCCCCHHHHHHHHHhccccCCCCCEE-EEecccccccCC-CCCE
Q 047490 197 -KGNKVMVFCNTLNSSRAVDHFLN-ENQISTV--NYHGEVPAQERVENLNKFKNEDGDCPTL-VCTDLAARGLDL-DVDH 270 (323)
Q Consensus 197 -~~~~~lvf~~~~~~~~~l~~~l~-~~~~~~~--~~~~~~~~~~r~~~~~~f~~~~g~~~il-v~t~~~~~Gid~-~~~~ 270 (323)
.+.+++|||+-...+..+-+-|. ..-..+. .+.|..++.+|.++.++|+++ ..+++| ++|.+.+.|+|+ .+|+
T Consensus 1338 vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~D-ptIDvLlLTThVGGLGLNLTGADT 1416 (1549)
T KOG0392|consen 1338 VSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNED-PTIDVLLLTTHVGGLGLNLTGADT 1416 (1549)
T ss_pred hccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCC-CceeEEEEeeeccccccccCCCce
Confidence 24699999999999999877554 4445555 678999999999999999982 255655 667899999999 9999
Q ss_pred EEEcCCCCCchhhhhhhcccccCCCcce--EEEEeeCC
Q 047490 271 VIMFDFPLNSIDYLHRTGRTARMGAKGK--VTSLVAKK 306 (323)
Q Consensus 271 vi~~~~p~s~~~~~Q~~GR~~R~~~~g~--~~~~~~~~ 306 (323)
||+++-.||+..-.|++.||+|.|++-. ++-+++.+
T Consensus 1417 VVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrG 1454 (1549)
T KOG0392|consen 1417 VVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRG 1454 (1549)
T ss_pred EEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcc
Confidence 9999999999999999999999998765 55556654
|
|
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.1e-16 Score=144.35 Aligned_cols=289 Identities=15% Similarity=0.170 Sum_probs=191.9
Q ss_pred ccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHH-HHHHHcCC----
Q 047490 12 LMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI-LQHIEDGN---- 86 (323)
Q Consensus 12 ~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l-~~~~~~~~---- 86 (323)
+..-.|..|-|++...-||.-=++++..+...+|++++....+.......... .++|.++|...| +++++.+.
T Consensus 114 LnAL~GkgVhVVTvNdYLA~RDae~mg~vy~fLGLsvG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~ 191 (925)
T PRK12903 114 LNALTGKGVIVSTVNEYLAERDAEEMGKVFNFLGLSVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSK 191 (925)
T ss_pred HHHhcCCceEEEecchhhhhhhHHHHHHHHHHhCCceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccH
Confidence 33444667888899999998889999999988999999888775555444444 379999999888 66666542
Q ss_pred --CCCCCCcEEeecchhhhhcCC----------------ChhhHHHHHhhhcccc-------------------------
Q 047490 87 --MVYGDIKYLVLDEADTMFDRG----------------FGPDIRKFLVPLKNRA------------------------- 123 (323)
Q Consensus 87 --~~~~~~~~vIiDE~h~~~~~~----------------~~~~~~~i~~~~~~~~------------------------- 123 (323)
...+.+.+.|+||+|.++=.+ ....+..++..+....
T Consensus 192 ~~~vqR~~~faIVDEVDSILIDEArTPLIISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~ 271 (925)
T PRK12903 192 EEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFK 271 (925)
T ss_pred HHhcCcccceeeeccchheeecccCCcccccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcC
Confidence 235678899999999854100 0001111111111000
Q ss_pred -CCC-CCCC-----------------------------------------------------------------------
Q 047490 124 -SKP-NGQG----------------------------------------------------------------------- 130 (323)
Q Consensus 124 -~~~-~~~~----------------------------------------------------------------------- 130 (323)
.+. ...+
T Consensus 272 i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAs 351 (925)
T PRK12903 272 LKNLYDIENSELVHRIQNALRAHKVMKEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLAT 351 (925)
T ss_pred CCcccChhhHHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeee
Confidence 000 0000
Q ss_pred ----------ceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEeccCChhHHHHHHHHhccCCCCCCe
Q 047490 131 ----------FQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNK 200 (323)
Q Consensus 131 ----------~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~ 200 (323)
-++.+||+|...+..++.+-+......++.-........... + ......|..++.+.+.+....+.|
T Consensus 352 IT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l~Vv~IPTnkP~~R~D~~d~--i-y~t~~~K~~Aii~ei~~~~~~gqP 428 (925)
T PRK12903 352 ITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMRVNVVPTNKPVIRKDEPDS--I-FGTKHAKWKAVVKEVKRVHKKGQP 428 (925)
T ss_pred ehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCCEEECCCCCCeeeeeCCCc--E-EEcHHHHHHHHHHHHHHHHhcCCC
Confidence 156666666654444444333333222222111111111111 1 122467888888877776678999
Q ss_pred EEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCCCCC---------EE
Q 047490 201 VMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLDVD---------HV 271 (323)
Q Consensus 201 ~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~~~~---------~v 271 (323)
+||.|.+...++.++..|...+++..+++..-...+-.-+.+.-+. |. |.|||+.+++|.|+.+. +|
T Consensus 429 VLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~e~EA~IIa~AG~~--Ga--VTIATNMAGRGTDI~Lg~~V~~~GGLhV 504 (925)
T PRK12903 429 ILIGTAQVEDSETLHELLLEANIPHTVLNAKQNAREAEIIAKAGQK--GA--ITIATNMAGRGTDIKLSKEVLELGGLYV 504 (925)
T ss_pred EEEEeCcHHHHHHHHHHHHHCCCCceeecccchhhHHHHHHhCCCC--Ce--EEEecccccCCcCccCchhHHHcCCcEE
Confidence 9999999999999999999999998888887554444333333332 44 89999999999999443 89
Q ss_pred EEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHH
Q 047490 272 IMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309 (323)
Q Consensus 272 i~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 309 (323)
|....|.|.+.-.|..||+||.|.+|.+..+++..|.-
T Consensus 505 IgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLeD~L 542 (925)
T PRK12903 505 LGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLDDQL 542 (925)
T ss_pred EecccCchHHHHHHHhcccccCCCCCcceEEEecchHH
Confidence 99999999999999999999999999999999977654
|
|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.1e-16 Score=145.68 Aligned_cols=260 Identities=16% Similarity=0.198 Sum_probs=144.4
Q ss_pred cCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc-CCCCCEEEeChHHHHHHHHcC--CCCC
Q 047490 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL-NNPIDMVVGTPGRILQHIEDG--NMVY 89 (323)
Q Consensus 13 ~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Iii~Tp~~l~~~~~~~--~~~~ 89 (323)
...+.+++|+|+|+.+|..|+.+.+..+.... . ....+...-...+ .....|+|+|.++|...+... ....
T Consensus 289 ~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~~~---~---~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~ 362 (667)
T TIGR00348 289 ELLKNPKVFFVVDRRELDYQLMKEFQSLQKDC---A---ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPV 362 (667)
T ss_pred hhcCCCeEEEEECcHHHHHHHHHHHHhhCCCC---C---cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCC
Confidence 34567899999999999999999999986421 0 0000111111112 223689999999998644332 1111
Q ss_pred CCC-cEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhc----Cceeeeccccc
Q 047490 90 GDI-KYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQ----GIAHLRTSTLH 164 (323)
Q Consensus 90 ~~~-~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~----~~~~~~~~~~~ 164 (323)
..- .+||+||||+.....+ ...+...++.. .++++||||............. .+.+... ...
T Consensus 363 ~~~~~lvIvDEaHrs~~~~~---~~~l~~~~p~a---------~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~-~~~ 429 (667)
T TIGR00348 363 DRKEVVVIFDEAHRSQYGEL---AKNLKKALKNA---------SFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYF-ITD 429 (667)
T ss_pred CCCCEEEEEEcCccccchHH---HHHHHhhCCCC---------cEEEEeCCCcccccccccccccCCCCCeEEEee-HHH
Confidence 111 2899999998654322 22222334332 7999999996421111101110 1111000 000
Q ss_pred cccccce-e-eEEe------c----------------cC----------------------ChhHHHHHHHHhccCC---
Q 047490 165 KKIASAR-H-DFIK------L----------------SG----------------------SENKLEALLQVLEPSL--- 195 (323)
Q Consensus 165 ~~~~~~~-~-~~~~------~----------------~~----------------------~~~k~~~l~~~l~~~~--- 195 (323)
....+.. . .|.. . +. .+..+..+.+.+.+++
T Consensus 430 AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~ 509 (667)
T TIGR00348 430 AIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKF 509 (667)
T ss_pred HhhcCCeeeEEEEecchhhccChHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHh
Confidence 0000000 0 0000 0 00 0001112222221111
Q ss_pred --CCCCeEEEEecCcccHHHHHHHHhhC-----CCeeEEecCCCCHH---------------------HHHHHHHhcccc
Q 047490 196 --SKGNKVMVFCNTLNSSRAVDHFLNEN-----QISTVNYHGEVPAQ---------------------ERVENLNKFKNE 247 (323)
Q Consensus 196 --~~~~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~---------------------~r~~~~~~f~~~ 247 (323)
..+.+.+|+|.++.+|..+++.|.+. +.....+++..+.. ....++++|+.
T Consensus 510 ~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~- 588 (667)
T TIGR00348 510 KELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKK- 588 (667)
T ss_pred hhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcC-
Confidence 12479999999999999999888654 23344455543322 12468888976
Q ss_pred CCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccC
Q 047490 248 DGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARM 293 (323)
Q Consensus 248 ~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~ 293 (323)
++..+|+|+++.+.+|+|. .+++++. +-|-....+.|++||+.|.
T Consensus 589 ~~~~~ilIVvdmllTGFDaP~l~tLyl-dKplk~h~LlQai~R~nR~ 634 (667)
T TIGR00348 589 EENPKLLIVVDMLLTGFDAPILNTLYL-DKPLKYHGLLQAIARTNRI 634 (667)
T ss_pred CCCceEEEEEcccccccCCCccceEEE-eccccccHHHHHHHHhccc
Confidence 4678999999999999999 5665555 4455456689999999994
|
Members of this family are assumed to differ from each other in DNA site specificity. |
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.3e-17 Score=150.80 Aligned_cols=126 Identities=26% Similarity=0.396 Sum_probs=113.8
Q ss_pred hhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEeccc
Q 047490 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLA 260 (323)
Q Consensus 181 ~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~ 260 (323)
..++..+++.+......+.+++|||++...++.+++.|...++.+..+||+++..+|..+++.|+. |.+.|+|||+.+
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~--g~i~vlV~t~~L 506 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRL--GEFDVLVGINLL 506 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHc--CCceEEEEeCHH
Confidence 446677777777766778899999999999999999999999999999999999999999999998 999999999999
Q ss_pred ccccCC-CCCEEEEcCC-----CCCchhhhhhhcccccCCCcceEEEEeeCCcHH
Q 047490 261 ARGLDL-DVDHVIMFDF-----PLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309 (323)
Q Consensus 261 ~~Gid~-~~~~vi~~~~-----p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 309 (323)
.+|+|+ ++++||+++. |.+...|.||+||+||. ..|.++++++..+..
T Consensus 507 ~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~ 560 (652)
T PRK05298 507 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDS 560 (652)
T ss_pred hCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHH
Confidence 999999 9999999875 78999999999999996 789999999964333
|
|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.1e-17 Score=149.41 Aligned_cols=171 Identities=16% Similarity=0.183 Sum_probs=133.4
Q ss_pred eEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccH
Q 047490 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSS 211 (323)
Q Consensus 132 ~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~ 211 (323)
++.+||+|...+..++.+-+......++.-......... ..+. .....|..++.+.+......+.|+||||+++..+
T Consensus 535 kLaGMTGTA~te~~Ef~~iY~L~Vv~IPTnrP~~R~D~~--d~vy-~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~s 611 (1025)
T PRK12900 535 KLAGMTGTAETEASEFFEIYKLDVVVIPTNKPIVRKDMD--DLVY-KTRREKYNAIVLKVEELQKKGQPVLVGTASVEVS 611 (1025)
T ss_pred hhcccCCCChhHHHHHHHHhCCcEEECCCCCCcceecCC--CeEe-cCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHH
Confidence 688999999777766655544443333222111111111 1122 3345688999998876556789999999999999
Q ss_pred HHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCC--------EEEEcCCCCCchh
Q 047490 212 RAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVD--------HVIMFDFPLNSID 282 (323)
Q Consensus 212 ~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~--------~vi~~~~p~s~~~ 282 (323)
+.++..|...+++...+|+ ...+|+..+..|.. +.-.|+|||+.+++|+|+ -.. +||.+..|.|.+.
T Consensus 612 E~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG--~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Ri 687 (1025)
T PRK12900 612 ETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAG--QKGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRI 687 (1025)
T ss_pred HHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcC--CCCeEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHH
Confidence 9999999999999999997 57788999999997 777899999999999998 433 4588899999999
Q ss_pred hhhhhcccccCCCcceEEEEeeCCcHH
Q 047490 283 YLHRTGRTARMGAKGKVTSLVAKKDVL 309 (323)
Q Consensus 283 ~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 309 (323)
|.|+.||+||.|.+|.++.|++..|.-
T Consensus 688 d~Ql~GRtGRqGdpGsS~ffvSleD~L 714 (1025)
T PRK12900 688 DRQLRGRAGRQGDPGESVFYVSLEDEL 714 (1025)
T ss_pred HHHHhhhhhcCCCCcceEEEechhHHH
Confidence 999999999999999999999987654
|
|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.8e-16 Score=135.86 Aligned_cols=179 Identities=24% Similarity=0.311 Sum_probs=142.8
Q ss_pred ceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCccc
Q 047490 131 FQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNS 210 (323)
Q Consensus 131 ~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~ 210 (323)
.|.|++||||.+...+... ........ .+.+...-.+.+.+....++.|+.-+......+.+++|-+=|.+.
T Consensus 387 ~q~i~VSATPg~~E~e~s~---~~vveQiI-----RPTGLlDP~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkm 458 (663)
T COG0556 387 PQTIYVSATPGDYELEQSG---GNVVEQII-----RPTGLLDPEIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKM 458 (663)
T ss_pred CCEEEEECCCChHHHHhcc---CceeEEee-----cCCCCCCCceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHH
Confidence 4899999999765443221 11111111 111222222334455667888888887777788999999999999
Q ss_pred HHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCC-----CCCchhhh
Q 047490 211 SRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDF-----PLNSIDYL 284 (323)
Q Consensus 211 ~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~-----p~s~~~~~ 284 (323)
|+.+.+.|.+.|+++.++|++...-+|.+++.+.+. |.++|||+.+.+.+|+|+ .+..|.++|. ..|....+
T Consensus 459 AEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~--G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLI 536 (663)
T COG0556 459 AEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRL--GEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLI 536 (663)
T ss_pred HHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhc--CCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHH
Confidence 999999999999999999999999999999999999 999999999999999999 8999999875 45899999
Q ss_pred hhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHh
Q 047490 285 HRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRK 320 (323)
Q Consensus 285 Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~ 320 (323)
|-+||+.|. -.|.++.+...-..++.+.|.+--++
T Consensus 537 QtIGRAARN-~~GkvIlYAD~iT~sM~~Ai~ET~RR 571 (663)
T COG0556 537 QTIGRAARN-VNGKVILYADKITDSMQKAIDETERR 571 (663)
T ss_pred HHHHHHhhc-cCCeEEEEchhhhHHHHHHHHHHHHH
Confidence 999999998 58999999998777777777765443
|
|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.6e-17 Score=126.19 Aligned_cols=132 Identities=29% Similarity=0.496 Sum_probs=104.8
Q ss_pred hhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCC-ccccccCCCCCEEEeChHHHHHHHHcCC
Q 047490 8 MLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLR-PQEDSLNNPIDMVVGTPGRILQHIEDGN 86 (323)
Q Consensus 8 ~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Iii~Tp~~l~~~~~~~~ 86 (323)
++..+.+.+..++++++|+++|+.|+.+.++.++...++++..++++.... .....+..+++|+|+||++|...+....
T Consensus 35 ~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~ 114 (169)
T PF00270_consen 35 ALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGK 114 (169)
T ss_dssp HHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTS
T ss_pred HHhhhccCCCceEEEEeecccccccccccccccccccccccccccccccccccccccccccccccccCcchhhccccccc
Confidence 344444445579999999999999999999999988778899998887644 3333345568999999999999998865
Q ss_pred CCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhH
Q 047490 87 MVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQ 145 (323)
Q Consensus 87 ~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~ 145 (323)
..+.+++++|+||+|.+..+.+...+..++..+.... +.+++++|||++...+
T Consensus 115 ~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~------~~~~i~~SAT~~~~~~ 167 (169)
T PF00270_consen 115 INISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFK------NIQIILLSATLPSNVE 167 (169)
T ss_dssp STGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTT------TSEEEEEESSSTHHHH
T ss_pred cccccceeeccCcccccccccHHHHHHHHHHHhcCCC------CCcEEEEeeCCChhHh
Confidence 5677799999999999998777788888877764431 3599999999985443
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-14 Score=124.70 Aligned_cols=297 Identities=20% Similarity=0.289 Sum_probs=212.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhcccc-ce----eEEEeec---------------CccCCccccc-------------
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHA-RF----RSTMVSG---------------GGRLRPQEDS------------- 63 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~-~~----~~~~~~~---------------~~~~~~~~~~------------- 63 (323)
.|+||||+|++..|-++.+.+.++.+.. .. +...-+| +....+....
T Consensus 37 RPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlGi 116 (442)
T PF06862_consen 37 RPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLGI 116 (442)
T ss_pred CceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEeE
Confidence 4999999999999999999999988762 10 0000011 0000000000
Q ss_pred --------c---CCCCCEEEeChHHHHHHHHc------CCCCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCC
Q 047490 64 --------L---NNPIDMVVGTPGRILQHIED------GNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKP 126 (323)
Q Consensus 64 --------~---~~~~~Iii~Tp~~l~~~~~~------~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~ 126 (323)
+ ..++|||||+|=-|...+.. ..-+++++.++|+|.+|.+.-+. .+++..++..+.....+.
T Consensus 117 k~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQN-W~Hv~~v~~~lN~~P~~~ 195 (442)
T PF06862_consen 117 KFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQN-WEHVLHVFEHLNLQPKKS 195 (442)
T ss_pred EEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhh-HHHHHHHHHHhccCCCCC
Confidence 0 12369999999988877764 23458999999999999987654 577778877776655444
Q ss_pred CCCC----------------ceEEEEEeecchhhHHHHHHHhcCcee---eec-----cccccccccceeeEEeccCC--
Q 047490 127 NGQG----------------FQTVLVSATMTKAVQKLVDEECQGIAH---LRT-----STLHKKIASARHDFIKLSGS-- 180 (323)
Q Consensus 127 ~~~~----------------~~~i~~sat~~~~~~~~~~~~~~~~~~---~~~-----~~~~~~~~~~~~~~~~~~~~-- 180 (323)
.+++ .|.|++|+...++......+.+.+..- +.. +........+.+.|..++..
T Consensus 196 ~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~ 275 (442)
T PF06862_consen 196 HDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSP 275 (442)
T ss_pred CCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCc
Confidence 4433 599999999999999988886655421 111 11233455666777665432
Q ss_pred ----hhHHHHH----HHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCC
Q 047490 181 ----ENKLEAL----LQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252 (323)
Q Consensus 181 ----~~k~~~l----~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ 252 (323)
+.+.+-+ +..+.. .....++|||+++--.--.+...|++.+.....+|...+..+.......|.. |+.+
T Consensus 276 ~~~~d~Rf~yF~~~iLP~l~~-~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~--G~~~ 352 (442)
T PF06862_consen 276 ADDPDARFKYFTKKILPQLKR-DSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFH--GRKP 352 (442)
T ss_pred chhhhHHHHHHHHHHHHHhhh-ccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHc--CCce
Confidence 2233333 333331 2355799999999999999999999999999999999999999999999999 9999
Q ss_pred EEEEecccc--cccCC-CCCEEEEcCCCCCchhhhhhhcccccCCC------cceEEEEeeCCcHHHHHHHHHH
Q 047490 253 TLVCTDLAA--RGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGA------KGKVTSLVAKKDVLLADRIEEA 317 (323)
Q Consensus 253 ilv~t~~~~--~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~------~g~~~~~~~~~~~~~~~~i~~~ 317 (323)
+|+.|.-+- .-..+ ++.+||+|++|..+.-|...++-.+.... ...|.++++.-|...+++|.-.
T Consensus 353 iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVGt 426 (442)
T PF06862_consen 353 ILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVGT 426 (442)
T ss_pred EEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhCH
Confidence 999997433 23457 89999999999999988877765554432 5789999999999988888643
|
; GO: 0005634 nucleus |
| >KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6e-17 Score=139.71 Aligned_cols=302 Identities=10% Similarity=0.063 Sum_probs=195.1
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccc-e--eEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcC----CC
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHAR-F--RSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDG----NM 87 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~----~~ 87 (323)
.+....++..|+.+++....+-+.-...... . -++-.+.+............+.+++++.|.........+ ..
T Consensus 329 ~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~ 408 (1034)
T KOG4150|consen 329 CHATNSLLPSEMVEHLRNGSKGQVVHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNV 408 (1034)
T ss_pred CcccceecchhHHHHhhccCCceEEEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhcccccc
Confidence 3445677888888887654432221111100 0 111222222222223334556899999998875544332 23
Q ss_pred CCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCC-CCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccc
Q 047490 88 VYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKP-NGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKK 166 (323)
Q Consensus 88 ~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (323)
++-...++++||+|..... ++......++.+...+.-. ...+.+++-.++|+...++-..+-. +...+........
T Consensus 409 ~~~~~~~~~~~~~~~Y~~~-~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~--~~~E~~Li~~DGS 485 (1034)
T KOG4150|consen 409 PVFEELCKDTNSCALYLFP-TKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELA--NLSELELVTIDGS 485 (1034)
T ss_pred HHHHHHHhcccceeeeecc-hhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhc--CCcceEEEEecCC
Confidence 3334578899999976542 4555444444443322111 1235799999999977665443332 2333333333334
Q ss_pred cccceeeEEeccC--------ChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC----C----CeeEEecC
Q 047490 167 IASARHDFIKLSG--------SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN----Q----ISTVNYHG 230 (323)
Q Consensus 167 ~~~~~~~~~~~~~--------~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~----~----~~~~~~~~ 230 (323)
+....+...+-++ .++++....+++.+....+-++|-||++++.|+.+....++. + ..+.-|.|
T Consensus 486 Ps~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRG 565 (1034)
T KOG4150|consen 486 PSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRG 565 (1034)
T ss_pred CCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcC
Confidence 4455555555443 234666666666666667889999999999999887765542 1 13345789
Q ss_pred CCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEE--eeCCc
Q 047490 231 EVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL--VAKKD 307 (323)
Q Consensus 231 ~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~--~~~~~ 307 (323)
+...++|+.+..+.-- |++.-+|+|.+++.|||+ .++.|++.+.|.|...+.|..||+||+.+.+..+++ ..+.|
T Consensus 566 GY~A~DRRKIE~~~F~--G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVD 643 (1034)
T KOG4150|consen 566 GYIAEDRRKIESDLFG--GKLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVD 643 (1034)
T ss_pred ccchhhHHHHHHHhhC--CeeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchh
Confidence 9999999999887776 999999999999999999 999999999999999999999999999877654444 44567
Q ss_pred HHHHHHHHHHHHhc
Q 047490 308 VLLADRIEEAIRKN 321 (323)
Q Consensus 308 ~~~~~~i~~~l~~~ 321 (323)
...+......++.+
T Consensus 644 Q~Y~~HP~~l~~~p 657 (1034)
T KOG4150|consen 644 QYYMSHPDKLFGSP 657 (1034)
T ss_pred hHhhcCcHHHhCCC
Confidence 77777776666544
|
|
| >KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-15 Score=132.67 Aligned_cols=266 Identities=16% Similarity=0.165 Sum_probs=168.5
Q ss_pred CccEEEEcCCHHHHHHHHHHH-HHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEE
Q 047490 17 RPRAVVLCPTRELSEQVFRVA-KSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYL 95 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~v 95 (323)
+.++=+--|.+--|..++.+. ++++..+|-.++.----.++. ....-|=++|-+.|++-+... ..+.++.+|
T Consensus 310 gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVGYsIRFEdcT------SekTvlKYMTDGmLlREfL~e-pdLasYSVi 382 (902)
T KOG0923|consen 310 GKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVGYSIRFEDCT------SEKTVLKYMTDGMLLREFLSE-PDLASYSVI 382 (902)
T ss_pred CceEeecCcchHHHHHHHHHHHHHhCcccccccceEEEecccc------CcceeeeeecchhHHHHHhcc-ccccceeEE
Confidence 344666678777665554443 444433333332221111111 122467799999998776643 458899999
Q ss_pred eecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEE
Q 047490 96 VLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFI 175 (323)
Q Consensus 96 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (323)
|+||||. ..-+...++.-++... .. +.+++++..|||+.-.-. . .++.....+.. +.....+..+|.
T Consensus 383 iiDEAHE-----RTL~TDILfgLvKDIa-r~-RpdLKllIsSAT~DAekF--S-~fFDdapIF~i---PGRRyPVdi~Yt 449 (902)
T KOG0923|consen 383 IVDEAHE-----RTLHTDILFGLVKDIA-RF-RPDLKLLISSATMDAEKF--S-AFFDDAPIFRI---PGRRYPVDIFYT 449 (902)
T ss_pred Eeehhhh-----hhhhhhHHHHHHHHHH-hh-CCcceEEeeccccCHHHH--H-HhccCCcEEec---cCcccceeeecc
Confidence 9999994 2222222222222111 11 136699999999863332 2 22222211111 122223334444
Q ss_pred eccCChhHHHHHHHHhccCC-CCCCeEEEEecCcccHHHHHHHHhhC---------CCeeEEecCCCCHHHHHHHHHhcc
Q 047490 176 KLSGSENKLEALLQVLEPSL-SKGNKVMVFCNTLNSSRAVDHFLNEN---------QISTVNYHGEVPAQERVENLNKFK 245 (323)
Q Consensus 176 ~~~~~~~k~~~l~~~l~~~~-~~~~~~lvf~~~~~~~~~l~~~l~~~---------~~~~~~~~~~~~~~~r~~~~~~f~ 245 (323)
..+..+.-..++..++.-+. ++.+-+|||....++.+...+.|.+. .+-++.+|+.+|++.+..|.+---
T Consensus 450 ~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP 529 (902)
T KOG0923|consen 450 KAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTP 529 (902)
T ss_pred cCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCC
Confidence 44433333344444444333 35588999999999999888877652 456678999999999988877666
Q ss_pred ccCCCCCEEEEecccccccCC-CCCEEEEcCC------------------CCCchhhhhhhcccccCCCcceEEEEeeC
Q 047490 246 NEDGDCPTLVCTDLAARGLDL-DVDHVIMFDF------------------PLNSIDYLHRTGRTARMGAKGKVTSLVAK 305 (323)
Q Consensus 246 ~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~------------------p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 305 (323)
. |..+|++||+++++.+.+ ++..||.-|. |-|.+.-.||+||+||.| +|+|+-+++.
T Consensus 530 ~--gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~ 605 (902)
T KOG0923|consen 530 P--GARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTA 605 (902)
T ss_pred C--CceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeech
Confidence 5 999999999999999999 9999998654 447777789999999996 9999999994
|
|
| >KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-15 Score=140.83 Aligned_cols=273 Identities=14% Similarity=0.155 Sum_probs=174.0
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhc-cccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcE
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSIS-HHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKY 94 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~ 94 (323)
+.-++++--|.|--|-.++++..+-. +..+-.++........ ......+.+||.+.+++.+.. ...+.++..
T Consensus 218 ~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGYqvrl~~~------~s~~t~L~fcTtGvLLr~L~~-~~~l~~vth 290 (924)
T KOG0920|consen 218 AACNIICTQPRRISAISVAERVAKERGESLGEEVGYQVRLESK------RSRETRLLFCTTGVLLRRLQS-DPTLSGVTH 290 (924)
T ss_pred CCCeEEecCCchHHHHHHHHHHHHHhccccCCeeeEEEeeecc------cCCceeEEEecHHHHHHHhcc-CcccccCce
Confidence 45568888899887777777766543 2222222222222111 112257999999999999887 556889999
Q ss_pred EeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccc--------
Q 047490 95 LVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKK-------- 166 (323)
Q Consensus 95 vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 166 (323)
+|+||+|.=.- -.+-+-.++..+.... .++++|+||||...+.... +..+...+.....-.+
T Consensus 291 iivDEVHER~i--~~DflLi~lk~lL~~~-----p~LkvILMSAT~dae~fs~---YF~~~pvi~i~grtfpV~~~fLED 360 (924)
T KOG0920|consen 291 IIVDEVHERSI--NTDFLLILLKDLLPRN-----PDLKVILMSATLDAELFSD---YFGGCPVITIPGRTFPVKEYFLED 360 (924)
T ss_pred eeeeeEEEccC--CcccHHHHHHHHhhhC-----CCceEEEeeeecchHHHHH---HhCCCceEeecCCCcchHHHHHHH
Confidence 99999995321 1111222222222221 3569999999987443332 2222111111000000
Q ss_pred --------------c--ccce------eeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC---
Q 047490 167 --------------I--ASAR------HDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN--- 221 (323)
Q Consensus 167 --------------~--~~~~------~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~--- 221 (323)
. +... -.........+-+..++..+... +..+.+|||.+...+...+.+.|...
T Consensus 361 il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~-~~~GaILVFLPG~~eI~~~~~~L~~~~~f 439 (924)
T KOG0920|consen 361 ILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDER-EFEGAILVFLPGWEEILQLKELLEVNLPF 439 (924)
T ss_pred HHHHhcccccccccccccccCccccccchhccccccHHHHHHHHHhcccC-CCCceEEEEcCCHHHHHHHHHHhhhcccc
Confidence 0 0000 00000001122344444444443 34679999999999999999998642
Q ss_pred ----CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCC------------------C
Q 047490 222 ----QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFP------------------L 278 (323)
Q Consensus 222 ----~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p------------------~ 278 (323)
..-+..+|+.|+..+++.+....-. |..+|+++|.+++..|.+ ++-+||..+.- -
T Consensus 440 ~~~~~~~ilplHs~~~s~eQ~~VF~~pp~--g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wv 517 (924)
T KOG0920|consen 440 ADSLKFAILPLHSSIPSEEQQAVFKRPPK--GTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWV 517 (924)
T ss_pred ccccceEEEeccccCChHHHHHhcCCCCC--CcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeec
Confidence 2456779999999999988877777 889999999999999999 99999987632 2
Q ss_pred CchhhhhhhcccccCCCcceEEEEeeCCcHH
Q 047490 279 NSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309 (323)
Q Consensus 279 s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 309 (323)
|.+.-.||.||+||. ..|.||.+++.....
T Consensus 518 SkAna~QR~GRAGRv-~~G~cy~L~~~~~~~ 547 (924)
T KOG0920|consen 518 SKANAKQRRGRAGRV-RPGICYHLYTRSRYE 547 (924)
T ss_pred cccchHHhcccccCc-cCCeeEEeechhhhh
Confidence 666678999999999 799999999975443
|
|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.8e-17 Score=145.10 Aligned_cols=292 Identities=17% Similarity=0.251 Sum_probs=166.7
Q ss_pred cchhhhhhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccc------------------
Q 047490 2 LRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS------------------ 63 (323)
Q Consensus 2 l~~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 63 (323)
|++.|++.+ .++|+|+|+.+|..|..+++.+-.. ..++...++++.......+.
T Consensus 198 LkisEala~-------~~iL~LvPSIsLLsQTlrew~~~~~-l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il 269 (1518)
T COG4889 198 LKISEALAA-------ARILFLVPSISLLSQTLREWTAQKE-LDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDIL 269 (1518)
T ss_pred HHHHHHHhh-------hheEeecchHHHHHHHHHHHhhccC-ccceeEEEecCccccccccccccccCCCCCcccHHHHH
Confidence 445555554 7999999999999999777766543 35666667666543221110
Q ss_pred -------cCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEE
Q 047490 64 -------LNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136 (323)
Q Consensus 64 -------~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~ 136 (323)
-..+--|+++|++++...-.....-+..+++||+||||+...--....-...+..+.. ...-+-.+.+.|
T Consensus 270 ~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs---~~niKa~kRlYm 346 (1518)
T COG4889 270 SEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHS---DQNIKAAKRLYM 346 (1518)
T ss_pred HHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEEEecchhccccceecccCcccceeecC---cchhHHHHhhhc
Confidence 0123459999999998876666667889999999999997532111110111111100 000001267889
Q ss_pred Eeecch---hhHHHHH-----------HH-------------------hcCceeeeccccccccccceeeEEeccCChhH
Q 047490 137 SATMTK---AVQKLVD-----------EE-------------------CQGIAHLRTSTLHKKIASARHDFIKLSGSENK 183 (323)
Q Consensus 137 sat~~~---~~~~~~~-----------~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 183 (323)
||||.- +...... .. +..+..+..........+..+....-+...-.
T Consensus 347 TATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~ 426 (1518)
T COG4889 347 TATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLA 426 (1518)
T ss_pred ccCchhhchhhhhhhhhccceeeccchhhhhchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccc
Confidence 999831 1111100 00 11111111111111111111111111111111
Q ss_pred HHHHHHHh-------ccCC------------CCCCeEEEEecCcccHHHHHHHHhh-------------CCCee--EEec
Q 047490 184 LEALLQVL-------EPSL------------SKGNKVMVFCNTLNSSRAVDHFLNE-------------NQIST--VNYH 229 (323)
Q Consensus 184 ~~~l~~~l-------~~~~------------~~~~~~lvf~~~~~~~~~l~~~l~~-------------~~~~~--~~~~ 229 (323)
.+..-.++ ++.. .+.++.|-||.+.++...+++.|.. .++.+ ....
T Consensus 427 ~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvD 506 (1518)
T COG4889 427 LDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVD 506 (1518)
T ss_pred hhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeeccc
Confidence 11111111 1100 0124678999999888877766643 23333 4456
Q ss_pred CCCCHHHHHHHHHhccc-cCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCC---CcceEEEEee
Q 047490 230 GEVPAQERVENLNKFKN-EDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMG---AKGKVTSLVA 304 (323)
Q Consensus 230 ~~~~~~~r~~~~~~f~~-~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~---~~g~~~~~~~ 304 (323)
|.|+..+|...+..-.. ++.+|+||-...++.+|+|+ .++.||++++-.+..+..|.+||+.|.. +.|.+|+-+.
T Consensus 507 GtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPIa 586 (1518)
T COG4889 507 GTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPIA 586 (1518)
T ss_pred ccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEec
Confidence 89999998544433222 34789999999999999999 8999999999999999999999999965 3566666555
|
|
| >KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.6e-15 Score=126.14 Aligned_cols=247 Identities=21% Similarity=0.293 Sum_probs=160.1
Q ss_pred ccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEee
Q 047490 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVL 97 (323)
Q Consensus 18 ~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vIi 97 (323)
...++--|.+-||.++++++.+. |+.+..++|++....... .+.++.+-+|.|+.. .-..++..|+
T Consensus 216 ksGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~~~~--~~~a~hvScTVEM~s--------v~~~yeVAVi 281 (700)
T KOG0953|consen 216 KSGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFVLDN--GNPAQHVSCTVEMVS--------VNTPYEVAVI 281 (700)
T ss_pred ccceecchHHHHHHHHHHHhhhc----CCCccccccceeeecCCC--CCcccceEEEEEEee--------cCCceEEEEe
Confidence 45678889999999999999886 678888888754433222 223566777765332 1335789999
Q ss_pred cchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEec
Q 047490 98 DEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL 177 (323)
Q Consensus 98 DE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (323)
||++.|.+...+=.....+..+...- |=+.+ .+.....+...+...- .. -..++|-..
T Consensus 282 DEIQmm~Dp~RGwAWTrALLGl~AdE----------iHLCG--epsvldlV~~i~k~TG----d~------vev~~YeRl 339 (700)
T KOG0953|consen 282 DEIQMMRDPSRGWAWTRALLGLAADE----------IHLCG--EPSVLDLVRKILKMTG----DD------VEVREYERL 339 (700)
T ss_pred hhHHhhcCcccchHHHHHHHhhhhhh----------hhccC--CchHHHHHHHHHhhcC----Ce------eEEEeeccc
Confidence 99999988766555555444443321 11111 2233344433332110 00 001111111
Q ss_pred cCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCe-eEEecCCCCHHHHHHHHHhccccCCCCCEEEE
Q 047490 178 SGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQIS-TVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256 (323)
Q Consensus 178 ~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~ 256 (323)
.+-. -.+.+..-+... +++-+ |.|-+++....+...+.+.+.. +++++|.+|++.|......|+.+.++++||||
T Consensus 340 ~pL~-v~~~~~~sl~nl--k~GDC-vV~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVA 415 (700)
T KOG0953|consen 340 SPLV-VEETALGSLSNL--KPGDC-VVAFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVA 415 (700)
T ss_pred Ccce-ehhhhhhhhccC--CCCCe-EEEeehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEe
Confidence 1100 111233333332 23344 3455667888898888887655 99999999999999999999998899999999
Q ss_pred ecccccccCCCCCEEEEcCCC---------CCchhhhhhhcccccCCC---cceEEEEee
Q 047490 257 TDLAARGLDLDVDHVIMFDFP---------LNSIDYLHRTGRTARMGA---KGKVTSLVA 304 (323)
Q Consensus 257 t~~~~~Gid~~~~~vi~~~~p---------~s~~~~~Q~~GR~~R~~~---~g~~~~~~~ 304 (323)
|+++++|+|++++.||+++.. -+..+-.|.+|||||.|. .|.+-++..
T Consensus 416 sDAIGMGLNL~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~ 475 (700)
T KOG0953|consen 416 SDAIGMGLNLNIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHS 475 (700)
T ss_pred ecccccccccceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeH
Confidence 999999999999999999764 356677899999999873 455555543
|
|
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.3e-15 Score=134.70 Aligned_cols=242 Identities=12% Similarity=0.095 Sum_probs=149.7
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHH-HHHHHcCC------CC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI-LQHIEDGN------MV 88 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l-~~~~~~~~------~~ 88 (323)
.|..|-|++++..||.+-++++..+...+|++++...++........... ++|.++|...| +++++.+. ..
T Consensus 116 ~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLsvg~i~~~~~~~err~aY~--~DItYgTn~e~gFDyLRDnm~~~~~~~v 193 (870)
T CHL00122 116 TGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGLIQEGMSSEERKKNYL--KDITYVTNSELGFDYLRDNMALSLSDVV 193 (870)
T ss_pred cCCceEEEeCCHHHHHHHHHHHHHHHHHcCCceeeeCCCCChHHHHHhcC--CCCEecCCccccccchhhccCcChHHhh
Confidence 47789999999999999999999999999999999888766555444444 59999999877 45555432 23
Q ss_pred CCCCcEEeecchhhhhcCC----------------ChhhHHHHHhhhcc-------------------------------
Q 047490 89 YGDIKYLVLDEADTMFDRG----------------FGPDIRKFLVPLKN------------------------------- 121 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~----------------~~~~~~~i~~~~~~------------------------------- 121 (323)
.+.+.+.|+||+|.++=.+ .......+...+..
T Consensus 194 ~r~~~faIVDEvDSiLIDeArTPLiISg~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ 273 (870)
T CHL00122 194 QRPFNYCIIDEVDSILIDEARTPLIISGQSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIED 273 (870)
T ss_pred ccccceeeeecchhheeccCCCceeccCCCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCcc
Confidence 5678999999999954100 00001111111100
Q ss_pred ------------------ccCCCCCCC-----------------------------------------------------
Q 047490 122 ------------------RASKPNGQG----------------------------------------------------- 130 (323)
Q Consensus 122 ------------------~~~~~~~~~----------------------------------------------------- 130 (323)
......+.+
T Consensus 274 ly~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~Q 353 (870)
T CHL00122 274 LYSANDPWIPYILNALKAKELFFKNVHYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQ 353 (870)
T ss_pred ccccccHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHH
Confidence 000000000
Q ss_pred ------ceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEE
Q 047490 131 ------FQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVF 204 (323)
Q Consensus 131 ------~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf 204 (323)
.++.+||+|...+..++.+-+......++.-. +.......-........|..++.+.+.+..+.+.|+||-
T Consensus 354 nfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPtnk---p~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIg 430 (870)
T CHL00122 354 NFFLLYPKLSGMTGTAKTEELEFEKIYNLEVVCIPTHR---PMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIG 430 (870)
T ss_pred HHHHhCchhcccCCCCHHHHHHHHHHhCCCEEECCCCC---CccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence 14555555554333332222222222211111 111111110112234568888888777766789999999
Q ss_pred ecCcccHHHHHHHHhhCCCeeEEecCCC--CHHHHHHHHHhccccCCCCCEEEEecccccccCC
Q 047490 205 CNTLNSSRAVDHFLNENQISTVNYHGEV--PAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL 266 (323)
Q Consensus 205 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~ 266 (323)
|.+....+.++..|.+.+++..+++..- ...+-+-|.+.-+. |. |.|||+.+++|.|+
T Consensus 431 T~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~AG~~--G~--VTIATNMAGRGTDI 490 (870)
T CHL00122 431 TTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQAGRK--GS--ITIATNMAGRGTDI 490 (870)
T ss_pred eCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHhcCCC--Cc--EEEeccccCCCcCe
Confidence 9999999999999999999988888863 23444444444443 54 89999999999997
|
|
| >KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.5e-15 Score=127.11 Aligned_cols=265 Identities=17% Similarity=0.205 Sum_probs=173.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcC--------CCC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDG--------NMV 88 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~--------~~~ 88 (323)
+..+||||.+---+.||...+..|.....-.+..++++.. .....++.|+|+|+.++..--++. -+.
T Consensus 345 kK~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFTsd~K-----e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~ 419 (776)
T KOG1123|consen 345 KKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFTSDAK-----ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLR 419 (776)
T ss_pred cccEEEEecCccCHHHHHHHHHhhcccCccceEEeecccc-----ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHh
Confidence 4689999999999999999999998777667777776633 334556899999998774322221 122
Q ss_pred CCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHh-cCceee---------
Q 047490 89 YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEEC-QGIAHL--------- 158 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~-~~~~~~--------- 158 (323)
-+.|.++++||+|.+.. ..++.++.-....| .+++|||+-++-.+..+..+ -++.-+
T Consensus 420 ~~EWGllllDEVHvvPA----~MFRRVlsiv~aHc---------KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~ 486 (776)
T KOG1123|consen 420 GREWGLLLLDEVHVVPA----KMFRRVLSIVQAHC---------KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQK 486 (776)
T ss_pred cCeeeeEEeehhccchH----HHHHHHHHHHHHHh---------hccceeEEeeccccccccceeecchhhhccHHHHHh
Confidence 46799999999997643 44555655555553 68999998655443322111 000000
Q ss_pred ----------------ecccccc--ccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhh
Q 047490 159 ----------------RTSTLHK--KIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE 220 (323)
Q Consensus 159 ----------------~~~~~~~--~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~ 220 (323)
....... .....+.....+- .++|...--=+++-+...+.|+|||..+.-...+++-.|.+
T Consensus 487 kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvM-NP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K 565 (776)
T KOG1123|consen 487 KGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVM-NPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK 565 (776)
T ss_pred CCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeec-CcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC
Confidence 0000000 0000000011111 23344433333333444788999999998887777776643
Q ss_pred CCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCC-CCchhhhhhhcccccCCC---
Q 047490 221 NQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFP-LNSIDYLHRTGRTARMGA--- 295 (323)
Q Consensus 221 ~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p-~s~~~~~Q~~GR~~R~~~--- 295 (323)
-.++|..+..+|..+++.|+.+ ..++.++.+.+....+|+ .++++|....- .|.++-.||.||.-|..+
T Consensus 566 -----pfIYG~Tsq~ERm~ILqnFq~n-~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~d 639 (776)
T KOG1123|consen 566 -----PFIYGPTSQNERMKILQNFQTN-PKVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRND 639 (776)
T ss_pred -----ceEECCCchhHHHHHHHhcccC-CccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCc
Confidence 4578999999999999999972 456778888999999999 89999986543 478888999999988642
Q ss_pred ---cceEEEEeeCC
Q 047490 296 ---KGKVTSLVAKK 306 (323)
Q Consensus 296 ---~g~~~~~~~~~ 306 (323)
....+++++..
T Consensus 640 e~fnafFYSLVS~D 653 (776)
T KOG1123|consen 640 EEFNAFFYSLVSKD 653 (776)
T ss_pred cccceeeeeeeecc
Confidence 23456666654
|
|
| >KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.3e-15 Score=131.06 Aligned_cols=273 Identities=13% Similarity=0.107 Sum_probs=167.0
Q ss_pred cEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEeec
Q 047490 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLD 98 (323)
Q Consensus 19 ~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vIiD 98 (323)
-+=|--|.|--|--++++...-+..++-++....-- .........|-++|-+.|++-+.+ .+.+..+..||+|
T Consensus 307 mIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIRf------d~ti~e~T~IkFMTDGVLLrEi~~-DflL~kYSvIIlD 379 (1172)
T KOG0926|consen 307 MIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIRF------DGTIGEDTSIKFMTDGVLLREIEN-DFLLTKYSVIILD 379 (1172)
T ss_pred eeeecCchHHHHHHHHHHHHHHhccCccceeEEEEe------ccccCCCceeEEecchHHHHHHHH-hHhhhhceeEEec
Confidence 445556877666555555544333333333322110 112233468999999999988775 4668899999999
Q ss_pred chhhhhcCCChhhHHHHHhhhccccC-----CCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceee
Q 047490 99 EADTMFDRGFGPDIRKFLVPLKNRAS-----KPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHD 173 (323)
Q Consensus 99 E~h~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (323)
|||.-.- ..+.+.-+++++..... ...-+++++|.||||+--.-...-.+.+..+.. ..........+..+
T Consensus 380 EAHERSv--nTDILiGmLSRiV~LR~k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pP--likVdARQfPVsIH 455 (1172)
T KOG0926|consen 380 EAHERSV--NTDILIGMLSRIVPLRQKYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPP--LIKVDARQFPVSIH 455 (1172)
T ss_pred hhhhccc--hHHHHHHHHHHHHHHHHHHhhhhcccCceeEEEEeeeEEecccccCceecCCCCc--eeeeecccCceEEE
Confidence 9995321 22333333333322111 122347899999999852221111111111111 11222333344455
Q ss_pred EEeccCChhHHHHHHHHhccCCC-CCCeEEEEecCcccHHHHHHHHhhC-------------------------------
Q 047490 174 FIKLSGSENKLEALLQVLEPSLS-KGNKVMVFCNTLNSSRAVDHFLNEN------------------------------- 221 (323)
Q Consensus 174 ~~~~~~~~~k~~~l~~~l~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~------------------------------- 221 (323)
|..-+..+...++..+.+.-+.. +++-+|||+....++..+++.|++.
T Consensus 456 F~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~ 535 (1172)
T KOG0926|consen 456 FNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSN 535 (1172)
T ss_pred eccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCc
Confidence 55555555555555555543321 5678999999999999999988651
Q ss_pred --------------------------------------------------------------------CCeeEEecCCCC
Q 047490 222 --------------------------------------------------------------------QISTVNYHGEVP 233 (323)
Q Consensus 222 --------------------------------------------------------------------~~~~~~~~~~~~ 233 (323)
...|..+++-++
T Consensus 536 k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs 615 (1172)
T KOG0926|consen 536 KTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLS 615 (1172)
T ss_pred ccccchhcccccchhhhhhhhhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcC
Confidence 122334555566
Q ss_pred HHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCC------------------CchhhhhhhcccccCC
Q 047490 234 AQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPL------------------NSIDYLHRTGRTARMG 294 (323)
Q Consensus 234 ~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~------------------s~~~~~Q~~GR~~R~~ 294 (323)
...+..+.+.--. |..-++|+|+++++.+.+ ++.+||..|..+ |.+.--||+||+||.|
T Consensus 616 ~~~Q~RVF~~~p~--g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg 693 (1172)
T KOG0926|consen 616 TEKQMRVFDEVPK--GERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG 693 (1172)
T ss_pred HHHhhhhccCCCC--CceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC
Confidence 6666666555555 777789999999999999 999999876432 4444569999999996
Q ss_pred CcceEEEEeeC
Q 047490 295 AKGKVTSLVAK 305 (323)
Q Consensus 295 ~~g~~~~~~~~ 305 (323)
+|.||-+++.
T Consensus 694 -pGHcYRLYSS 703 (1172)
T KOG0926|consen 694 -PGHCYRLYSS 703 (1172)
T ss_pred -CCceeehhhh
Confidence 8999999874
|
|
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.1e-16 Score=104.35 Aligned_cols=80 Identities=44% Similarity=0.745 Sum_probs=75.1
Q ss_pred HHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccc
Q 047490 213 AVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTA 291 (323)
Q Consensus 213 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~ 291 (323)
.+++.|+..+..+..+||++++.+|..+++.|++ +...++++|+.+++|+|+ .+++||++++|++...|.|++||++
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~ 79 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNN--GKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAG 79 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHc--CCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccc
Confidence 4667778889999999999999999999999999 888999999999999999 8999999999999999999999999
Q ss_pred cCC
Q 047490 292 RMG 294 (323)
Q Consensus 292 R~~ 294 (323)
|.|
T Consensus 80 R~g 82 (82)
T smart00490 80 RAG 82 (82)
T ss_pred cCC
Confidence 975
|
|
| >KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-14 Score=127.43 Aligned_cols=264 Identities=15% Similarity=0.160 Sum_probs=163.1
Q ss_pred cEEEEcCCHHHHHHHHHHHHHhc-cccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEee
Q 047490 19 RAVVLCPTRELSEQVFRVAKSIS-HHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVL 97 (323)
Q Consensus 19 ~~lvl~P~~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vIi 97 (323)
-+-+--|.+.-|--+++...+-. ...|-.++...--.+. .....-|-++|-+.|++-... ...+.++..||+
T Consensus 402 mIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdv------T~~~T~IkymTDGiLLrEsL~-d~~L~kYSviIm 474 (1042)
T KOG0924|consen 402 MIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDV------TSEDTKIKYMTDGILLRESLK-DRDLDKYSVIIM 474 (1042)
T ss_pred eeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeec------CCCceeEEEeccchHHHHHhh-hhhhhheeEEEe
Confidence 34444577776666666555433 2222222211111001 112246889999988764332 234778999999
Q ss_pred cchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEec
Q 047490 98 DEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL 177 (323)
Q Consensus 98 DE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (323)
||||.-.- -.+.+.-++....... .++++|.+|||+.-.- +. .++.+...+.+. .....+...|...
T Consensus 475 DEAHERsl--NtDilfGllk~~larR-----rdlKliVtSATm~a~k--f~-nfFgn~p~f~Ip---GRTyPV~~~~~k~ 541 (1042)
T KOG0924|consen 475 DEAHERSL--NTDILFGLLKKVLARR-----RDLKLIVTSATMDAQK--FS-NFFGNCPQFTIP---GRTYPVEIMYTKT 541 (1042)
T ss_pred chhhhccc--chHHHHHHHHHHHHhh-----ccceEEEeeccccHHH--HH-HHhCCCceeeec---CCccceEEEeccC
Confidence 99995211 1122222222222221 2569999999986332 22 222222222221 1122233333333
Q ss_pred cCChhHHHHHHHHhccCCCC-CCeEEEEecCcccHHHHHHHHhhC----------CCeeEEecCCCCHHHHHHHHHhccc
Q 047490 178 SGSENKLEALLQVLEPSLSK-GNKVMVFCNTLNSSRAVDHFLNEN----------QISTVNYHGEVPAQERVENLNKFKN 246 (323)
Q Consensus 178 ~~~~~k~~~l~~~l~~~~~~-~~~~lvf~~~~~~~~~l~~~l~~~----------~~~~~~~~~~~~~~~r~~~~~~f~~ 246 (323)
+..+.--.++.+.+.-+... .+-+|||.+.....+..+..+++. ++.+..+++.+|...+.++.+.-..
T Consensus 542 p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~ 621 (1042)
T KOG0924|consen 542 PVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEG 621 (1042)
T ss_pred chHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCC
Confidence 33333334555555555443 378999999988777666555431 5678899999999888877766665
Q ss_pred cCCCCCEEEEecccccccCC-CCCEEEEcCC------------------CCCchhhhhhhcccccCCCcceEEEEeeC
Q 047490 247 EDGDCPTLVCTDLAARGLDL-DVDHVIMFDF------------------PLNSIDYLHRTGRTARMGAKGKVTSLVAK 305 (323)
Q Consensus 247 ~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~------------------p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 305 (323)
|..+++|+|.++++.+.+ ++.+||..|. |-|.+.-.||.||+||.| +|.|+-+++.
T Consensus 622 --~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe 696 (1042)
T KOG0924|consen 622 --GVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTE 696 (1042)
T ss_pred --CceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhh
Confidence 888999999999999999 9999998764 457778889999999995 9999999986
|
|
| >KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.9e-14 Score=120.58 Aligned_cols=266 Identities=15% Similarity=0.212 Sum_probs=173.7
Q ss_pred cEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEeec
Q 047490 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLD 98 (323)
Q Consensus 19 ~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vIiD 98 (323)
-.||+||. .+-..|++.+..|++.... +..+.++.+.... +.....|.|.+++.+..+-. .+.-..+++||+|
T Consensus 243 plliVcPA-svrftWa~al~r~lps~~p-i~vv~~~~D~~~~---~~t~~~v~ivSye~ls~l~~--~l~~~~~~vvI~D 315 (689)
T KOG1000|consen 243 PLLIVCPA-SVRFTWAKALNRFLPSIHP-IFVVDKSSDPLPD---VCTSNTVAIVSYEQLSLLHD--ILKKEKYRVVIFD 315 (689)
T ss_pred cEEEEecH-HHhHHHHHHHHHhcccccc-eEEEecccCCccc---cccCCeEEEEEHHHHHHHHH--HHhcccceEEEEe
Confidence 35777994 5567789999999886543 5555555443321 22235799999998876533 2334468999999
Q ss_pred chhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchh--h-----------------HHHHHHHhcCce---
Q 047490 99 EADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKA--V-----------------QKLVDEECQGIA--- 156 (323)
Q Consensus 99 E~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~--~-----------------~~~~~~~~~~~~--- 156 (323)
|+|.+-+.. ......++.-+.... ++|++|+||.-+ . .++-.++|....
T Consensus 316 EsH~Lk~sk-tkr~Ka~~dllk~ak--------hvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~ 386 (689)
T KOG1000|consen 316 ESHMLKDSK-TKRTKAATDLLKVAK--------HVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRF 386 (689)
T ss_pred chhhhhccc-hhhhhhhhhHHHHhh--------heEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccce
Confidence 999986643 222444443333322 799999998421 1 111112221100
Q ss_pred --ee----------------------eccccccccccceeeEEec-cC--------------------------------
Q 047490 157 --HL----------------------RTSTLHKKIASARHDFIKL-SG-------------------------------- 179 (323)
Q Consensus 157 --~~----------------------~~~~~~~~~~~~~~~~~~~-~~-------------------------------- 179 (323)
.+ ........++. ++..+.. .+
T Consensus 387 ~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpK-rr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~ 465 (689)
T KOG1000|consen 387 CFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLPPK-RREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLF 465 (689)
T ss_pred eeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCcc-ceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHH
Confidence 00 00000001111 1111111 11
Q ss_pred ----ChhHHHHHHHHhccC----CCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCC
Q 047490 180 ----SENKLEALLQVLEPS----LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251 (323)
Q Consensus 180 ----~~~k~~~l~~~l~~~----~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~ 251 (323)
...|...+.+.+..+ ...+.|.+|||......+.+...+.+.+.+...+.|..++..|...-+.|+.++...
T Consensus 466 y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~ 545 (689)
T KOG1000|consen 466 YSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVR 545 (689)
T ss_pred HHHhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceE
Confidence 111444555555442 246689999999999999999999999999999999999999999999999833333
Q ss_pred CEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEE
Q 047490 252 PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTS 301 (323)
Q Consensus 252 ~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~ 301 (323)
--+++..+++.|+++ .++.|++...+||+.-..|.-.|++|.|+++.+-+
T Consensus 546 VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v 596 (689)
T KOG1000|consen 546 VAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFV 596 (689)
T ss_pred EEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeE
Confidence 345667889999999 99999999999999999999999999998765433
|
|
| >KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.60 E-value=8.3e-14 Score=118.67 Aligned_cols=123 Identities=24% Similarity=0.255 Sum_probs=100.6
Q ss_pred HHHHHHHHhccCCC--CCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEeccc
Q 047490 183 KLEALLQVLEPSLS--KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLA 260 (323)
Q Consensus 183 k~~~l~~~l~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~ 260 (323)
|+++|.+-|....+ ..-|.|||.+-......+.-.|.+.|+.+.-+-|+|++..|...++.|.+++.-.-.|++-.+.
T Consensus 621 KIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAG 700 (791)
T KOG1002|consen 621 KIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAG 700 (791)
T ss_pred HHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccC
Confidence 67777665544322 2347899999999999998899999999999999999999999999999844433456777899
Q ss_pred ccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcc--eEEEEeeC
Q 047490 261 ARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG--KVTSLVAK 305 (323)
Q Consensus 261 ~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g--~~~~~~~~ 305 (323)
+..+|+ .+.+|+.+|+.|++.--.|...|.+|.|+.. +++.|+-.
T Consensus 701 GVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iE 748 (791)
T KOG1002|consen 701 GVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIE 748 (791)
T ss_pred ceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehh
Confidence 999999 9999999999999999999999999999644 45555443
|
|
| >KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.7e-14 Score=124.64 Aligned_cols=124 Identities=24% Similarity=0.370 Sum_probs=99.8
Q ss_pred HHHHHHHHhccC-CCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEE-EEeccc
Q 047490 183 KLEALLQVLEPS-LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL-VCTDLA 260 (323)
Q Consensus 183 k~~~l~~~l~~~-~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~il-v~t~~~ 260 (323)
|+..+++.+... .....+++|..+......-+...++..|.....+||.....+|+.+++.|+.+.|..+|+ ++-.+.
T Consensus 730 Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAG 809 (901)
T KOG4439|consen 730 KIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAG 809 (901)
T ss_pred HHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccC
Confidence 555555555544 345678888887777777778889988988899999999999999999999876655555 555889
Q ss_pred ccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceE--EEEeeCC
Q 047490 261 ARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKV--TSLVAKK 306 (323)
Q Consensus 261 ~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~--~~~~~~~ 306 (323)
+.|+|+ ..+|+|..|+-||++--.|++.|..|.|++..+ +-+.+.+
T Consensus 810 GVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~g 858 (901)
T KOG4439|consen 810 GVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKG 858 (901)
T ss_pred cceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEEEEEEecC
Confidence 999999 999999999999999999999999999976543 3444444
|
|
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-13 Score=126.60 Aligned_cols=248 Identities=13% Similarity=0.134 Sum_probs=155.9
Q ss_pred ccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHH-HHHHHcC---
Q 047490 10 GVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI-LQHIEDG--- 85 (323)
Q Consensus 10 ~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l-~~~~~~~--- 85 (323)
..+..-.|..|-|++++..||..-++++..+...+|++++...++........ .-.++|+++|+..| ++++..+
T Consensus 119 aylnAL~GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~i~~~~~~~err~--aY~~DItYgTn~e~gFDYLRDnm~~ 196 (939)
T PRK12902 119 SYLNALTGKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGLIQQDMSPEERKK--NYACDITYATNSELGFDYLRDNMAT 196 (939)
T ss_pred HHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEEECCCCChHHHHH--hcCCCeEEecCCcccccchhhhhcc
Confidence 33344456789999999999999999999999999999999877655444333 33479999999988 4444332
Q ss_pred ---CCCCCCCcEEeecchhhhhcCC----------------ChhhHHHHHhhhcc------c----c-------------
Q 047490 86 ---NMVYGDIKYLVLDEADTMFDRG----------------FGPDIRKFLVPLKN------R----A------------- 123 (323)
Q Consensus 86 ---~~~~~~~~~vIiDE~h~~~~~~----------------~~~~~~~i~~~~~~------~----~------------- 123 (323)
....+.+.+.|+||+|.++=.+ .......+...+.. . .
T Consensus 197 ~~~~~vqR~~~faIVDEvDSILIDEArTPLIISg~~~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G 276 (939)
T PRK12902 197 DISEVVQRPFNYCVIDEVDSILIDEARTPLIISGQVERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEG 276 (939)
T ss_pred cccccccCccceEEEecccceeeccCCCcccccCCCccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHH
Confidence 2345778999999999954100 00011111111111 0 0
Q ss_pred --------C---CCCCCC--------------------------------------------------------------
Q 047490 124 --------S---KPNGQG-------------------------------------------------------------- 130 (323)
Q Consensus 124 --------~---~~~~~~-------------------------------------------------------------- 130 (323)
. .....+
T Consensus 277 ~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it 356 (939)
T PRK12902 277 FAKAEQLLGVSDLFDPQDPWAHYIFNALKAKELFIKDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQ 356 (939)
T ss_pred HHHHHHHhCchhhcCcccHHHHHHHHHHHHHHHHhcCCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCC
Confidence 0 000000
Q ss_pred ------------------ceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEeccCChhHHHHHHHHhc
Q 047490 131 ------------------FQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLE 192 (323)
Q Consensus 131 ------------------~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~ 192 (323)
.++.+||+|...+..++.+-+......++.-........... + ......|..++.+.+.
T Consensus 357 ~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPTnkP~~R~d~~d~--v-y~t~~~K~~Ai~~ei~ 433 (939)
T PRK12902 357 PETQTLASITYQNFFLLYPKLAGMTGTAKTEEVEFEKTYKLEVTVIPTNRPRRRQDWPDQ--V-YKTEIAKWRAVANETA 433 (939)
T ss_pred CCceeeeeeeHHHHHhhCchhcccCCCCHHHHHHHHHHhCCcEEEcCCCCCeeeecCCCe--E-EcCHHHHHHHHHHHHH
Confidence 156667777654444443333333332222111111111111 1 1224678888888887
Q ss_pred cCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCC-CC-HHHHHHHHHhccccCCCCCEEEEecccccccCC
Q 047490 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGE-VP-AQERVENLNKFKNEDGDCPTLVCTDLAARGLDL 266 (323)
Q Consensus 193 ~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~-~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~ 266 (323)
+..+.|.|+||-+.+.+..+.++..|...+++..+++.. .. ..+-+-+.+.-+. |. |.|||+.+++|.|+
T Consensus 434 ~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~AG~~--Ga--VTIATNMAGRGTDI 505 (939)
T PRK12902 434 EMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQAGRK--GA--VTIATNMAGRGTDI 505 (939)
T ss_pred HHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHhcCCC--Cc--EEEeccCCCCCcCE
Confidence 776789999999999999999999999999988888886 22 3333333444333 54 89999999999997
|
|
| >KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.1e-12 Score=110.06 Aligned_cols=215 Identities=18% Similarity=0.234 Sum_probs=136.3
Q ss_pred EeChHHHHHHHHcC--------CCCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchh
Q 047490 72 VGTPGRILQHIEDG--------NMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKA 143 (323)
Q Consensus 72 i~Tp~~l~~~~~~~--------~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~ 143 (323)
.++|..+++++..+ .-.+..+..+|+||||. ..-....++.-++...... .++++|.+|||+..
T Consensus 132 C~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahE-----RtlATDiLmGllk~v~~~r--pdLk~vvmSatl~a- 203 (699)
T KOG0925|consen 132 CTSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHE-----RTLATDILMGLLKEVVRNR--PDLKLVVMSATLDA- 203 (699)
T ss_pred cCChhHHHHHhcchHHHHHHhhCcccccccEEEechhhh-----hhHHHHHHHHHHHHHHhhC--CCceEEEeecccch-
Confidence 35667676665433 23578899999999994 2222222222222221111 36799999999853
Q ss_pred hHHHHHHHhcCceeeeccccccccccceeeEEeccCChhHHHHHHHHhcc-C-CCCCCeEEEEecCcccHHHHHHHHhhC
Q 047490 144 VQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEP-S-LSKGNKVMVFCNTLNSSRAVDHFLNEN 221 (323)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-~-~~~~~~~lvf~~~~~~~~~l~~~l~~~ 221 (323)
.-++.+..+...+..+. ......|+......+-.++.+..+.+ + .+.++-+++|....++.+..++.+...
T Consensus 204 --~Kfq~yf~n~Pll~vpg-----~~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re 276 (699)
T KOG0925|consen 204 --EKFQRYFGNAPLLAVPG-----THPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISRE 276 (699)
T ss_pred --HHHHHHhCCCCeeecCC-----CCceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHH
Confidence 23445555443333322 22233355555555555544443322 1 235689999999999999998887642
Q ss_pred ---------CCeeEEecCCCCHHHHHHHHHhcccc---CCCCCEEEEecccccccCC-CCCEEEEcCC------------
Q 047490 222 ---------QISTVNYHGEVPAQERVENLNKFKNE---DGDCPTLVCTDLAARGLDL-DVDHVIMFDF------------ 276 (323)
Q Consensus 222 ---------~~~~~~~~~~~~~~~r~~~~~~f~~~---~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~------------ 276 (323)
...+..+| ++++..+.+--... .-..+|+|+|.+++..+.+ .+.+||.-|.
T Consensus 277 ~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRv 352 (699)
T KOG0925|consen 277 VDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRV 352 (699)
T ss_pred HHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceee
Confidence 34566667 33444433332221 1246799999999999999 8999998664
Q ss_pred ------CCCchhhhhhhcccccCCCcceEEEEeeCC
Q 047490 277 ------PLNSIDYLHRTGRTARMGAKGKVTSLVAKK 306 (323)
Q Consensus 277 ------p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 306 (323)
|-|...-.||.||+||. .+|+|..+++..
T Consensus 353 esllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 353 ESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred eeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 55788889999999998 799999999864
|
|
| >KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.45 E-value=9.9e-14 Score=127.01 Aligned_cols=127 Identities=25% Similarity=0.352 Sum_probs=104.5
Q ss_pred HHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCC-CEEEEecccc
Q 047490 183 KLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC-PTLVCTDLAA 261 (323)
Q Consensus 183 k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~-~ilv~t~~~~ 261 (323)
|.+.|-.++-.....+++++.||.-.....-+-.+|.-.++.-..+.|.....+|...++.|+.++... .+|.+|.+.+
T Consensus 711 KfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fllstragg 790 (1157)
T KOG0386|consen 711 KFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGG 790 (1157)
T ss_pred HHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccc
Confidence 555555555444457889999999988888888888877888888999999999999999999965554 4778899999
Q ss_pred cccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHH
Q 047490 262 RGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309 (323)
Q Consensus 262 ~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 309 (323)
.|+|+ .++.||+||..|++..+.|+..|++|.|+...+-++....-.+
T Consensus 791 lglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~s 839 (1157)
T KOG0386|consen 791 LGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNS 839 (1157)
T ss_pred cccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhH
Confidence 99999 9999999999999999999999999999876655555544333
|
|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.3e-12 Score=116.89 Aligned_cols=270 Identities=13% Similarity=0.104 Sum_probs=153.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCCCCCC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMVYGDI 92 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~~~~~ 92 (323)
|..+|||+|..+|..|+.+.+++.++. -.+..++++....++.+.+ .+...|+|+|-..++ ..+.++
T Consensus 188 Gk~vLvLvPEi~lt~q~~~rl~~~f~~--~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAvF-------aP~~~L 258 (665)
T PRK14873 188 GRGALVVVPDQRDVDRLEAALRALLGA--GDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAVF-------APVEDL 258 (665)
T ss_pred CCeEEEEecchhhHHHHHHHHHHHcCC--CcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeEE-------eccCCC
Confidence 678999999999999999999998852 3577788877665543332 455789999943222 357899
Q ss_pred cEEeecchhhhhcCC---ChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccccccccc
Q 047490 93 KYLVLDEADTMFDRG---FGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIAS 169 (323)
Q Consensus 93 ~~vIiDE~h~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (323)
.+||+||-|.-.-.. ..-+.+.+....... .+.++|+-|||++-+........... .+..........-
T Consensus 259 gLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~------~~~~lvLgSaTPSles~~~~~~g~~~--~~~~~~~~~~~~~ 330 (665)
T PRK14873 259 GLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQ------HGCALLIGGHARTAEAQALVESGWAH--DLVAPRPVVRARA 330 (665)
T ss_pred CEEEEEcCCchhhcCCCCCCccHHHHHHHHHHH------cCCcEEEECCCCCHHHHHHHhcCcce--eeccccccccCCC
Confidence 999999999643211 223445554333322 14489999999987766554432211 1111100000000
Q ss_pred ceeeEEeccC----------ChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHH-Hhh------CCCeeEE-----
Q 047490 170 ARHDFIKLSG----------SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHF-LNE------NQISTVN----- 227 (323)
Q Consensus 170 ~~~~~~~~~~----------~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~-l~~------~~~~~~~----- 227 (323)
.......... ...--..+.+.+++.++++ ++|+|.|.+..+-.+... ... .+....+
T Consensus 331 P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~g-qvll~lnRrGyap~l~C~~Cg~~~~C~~C~~~L~~h~~~~ 409 (665)
T PRK14873 331 PRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHG-PVLVQVPRRGYVPSLACARCRTPARCRHCTGPLGLPSAGG 409 (665)
T ss_pred CeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcC-cEEEEecCCCCCCeeEhhhCcCeeECCCCCCceeEecCCC
Confidence 1111111110 0001235566666666778 999999997755543221 100 0000000
Q ss_pred -----ecC-------------------CCCHH------------------HHHHHHHhccccCCCCCEEEEec----ccc
Q 047490 228 -----YHG-------------------EVPAQ------------------ERVENLNKFKNEDGDCPTLVCTD----LAA 261 (323)
Q Consensus 228 -----~~~-------------------~~~~~------------------~r~~~~~~f~~~~g~~~ilv~t~----~~~ 261 (323)
+.| +...+ +++.+++.|. ++.+|||+|+ .+.
T Consensus 410 ~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~d~d~~l~~~~---~~~~IlVGTqgaepm~~ 486 (665)
T PRK14873 410 TPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTSGGDQVVDTVD---AGPALVVATPGAEPRVE 486 (665)
T ss_pred eeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEEChHHHHHhhc---cCCCEEEECCCCccccc
Confidence 000 00000 1234666664 5778999998 555
Q ss_pred cccCCCCCEEEEcCC------CC------CchhhhhhhcccccCCCcceEEEEeeCCcHHHHH
Q 047490 262 RGLDLDVDHVIMFDF------PL------NSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLAD 312 (323)
Q Consensus 262 ~Gid~~~~~vi~~~~------p~------s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~ 312 (323)
| +++.|++.|. |. ....+.|..||+||..+.|.+++.. ..+...++
T Consensus 487 -g---~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~-~p~~~~~~ 544 (665)
T PRK14873 487 -G---GYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVA-ESSLPTVQ 544 (665)
T ss_pred -C---CceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEe-CCCCHHHH
Confidence 3 2344444432 21 3445579999999998899999875 44444333
|
|
| >KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.7e-12 Score=113.09 Aligned_cols=124 Identities=19% Similarity=0.321 Sum_probs=104.9
Q ss_pred HHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEeccccc
Q 047490 183 KLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAAR 262 (323)
Q Consensus 183 k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~ 262 (323)
|+..|-.+|......+.++|+|.+-.+....+-+.|.-.++.-..+.|.....+|+++..+|+. +..+-+|++|.+.+-
T Consensus 1029 KL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~-sdiFvFLLSTRAGGL 1107 (1185)
T KOG0388|consen 1029 KLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQA-SDIFVFLLSTRAGGL 1107 (1185)
T ss_pred ceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccC-CceEEEEEecccCcc
Confidence 4444545554444578899999999999999999998889999999999999999999999998 344457889999999
Q ss_pred ccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcc--eEEEEeeCCc
Q 047490 263 GLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG--KVTSLVAKKD 307 (323)
Q Consensus 263 Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g--~~~~~~~~~~ 307 (323)
|||+ .++.||+|+..|++..-.|.+.|++|.|+.. .++-+++.+.
T Consensus 1108 GINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgT 1155 (1185)
T KOG0388|consen 1108 GINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGT 1155 (1185)
T ss_pred cccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeeccccc
Confidence 9999 9999999999999999999999999999754 4666666543
|
|
| >KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.2e-12 Score=113.72 Aligned_cols=121 Identities=24% Similarity=0.309 Sum_probs=99.9
Q ss_pred HHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC----------------------CCeeEEecCCCCHHHHHHH
Q 047490 183 KLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN----------------------QISTVNYHGEVPAQERVEN 240 (323)
Q Consensus 183 k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~----------------------~~~~~~~~~~~~~~~r~~~ 240 (323)
|+-.|+++|...-+-|.+.|||.++......+..+|... |..-..+.|.....+|+..
T Consensus 1127 KmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~ 1206 (1567)
T KOG1015|consen 1127 KMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKW 1206 (1567)
T ss_pred ceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHH
Confidence 666677777776677889999999999999888887541 2334557889999999999
Q ss_pred HHhccccCC--CCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEe
Q 047490 241 LNKFKNEDG--DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLV 303 (323)
Q Consensus 241 ~~~f~~~~g--~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~ 303 (323)
.+.|+.+.. ..-.||+|.+.+-|+|+ .++.||+||..||+.--.|.+=|+.|.|+...||++-
T Consensus 1207 ~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYR 1272 (1567)
T KOG1015|consen 1207 AEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYR 1272 (1567)
T ss_pred HHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehh
Confidence 999997432 23479999999999999 9999999999999999999999999999876666543
|
|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.40 E-value=1e-11 Score=99.02 Aligned_cols=144 Identities=30% Similarity=0.460 Sum_probs=103.4
Q ss_pred hhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCC-CEEEeChHHHHHHHHcCC
Q 047490 8 MLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPI-DMVVGTPGRILQHIEDGN 86 (323)
Q Consensus 8 ~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~Iii~Tp~~l~~~~~~~~ 86 (323)
++..+...+..+++|++|+.+++.|+.+.+..+............++.........+..+. +++++|++.+.+.+....
T Consensus 45 ~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~ 124 (201)
T smart00487 45 ALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL 124 (201)
T ss_pred HHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC
Confidence 3344444446789999999999999999999988654423344444433233333333444 999999999999988876
Q ss_pred CCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeee
Q 047490 87 MVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLR 159 (323)
Q Consensus 87 ~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~ 159 (323)
.....++++|+||+|.+....+...+..++..+.. ..+++++|||+++........+......+.
T Consensus 125 ~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~--------~~~~v~~saT~~~~~~~~~~~~~~~~~~~~ 189 (201)
T smart00487 125 LELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPK--------NVQLLLLSATPPEEIENLLELFLNDPVFID 189 (201)
T ss_pred cCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCc--------cceEEEEecCCchhHHHHHHHhcCCCEEEe
Confidence 67778999999999999875566777777765522 238999999999888777777666544443
|
|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.3e-11 Score=112.38 Aligned_cols=276 Identities=15% Similarity=0.193 Sum_probs=179.9
Q ss_pred cCCCCccEEEEcCCHHHHHHHHHHHHHhccc-cceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCC
Q 047490 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHH-ARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGD 91 (323)
Q Consensus 13 ~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~ 91 (323)
......+++++.|..+.+..+++.+.+-+.. .|+.+..+.|+...+- .+....+|+|+||++|..+ + ..+.
T Consensus 1182 ~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~s~~l---kl~~~~~vii~tpe~~d~l-q----~iQ~ 1253 (1674)
T KOG0951|consen 1182 RPDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGETSLDL---KLLQKGQVIISTPEQWDLL-Q----SIQQ 1253 (1674)
T ss_pred CCccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCCccccch---HHhhhcceEEechhHHHHH-h----hhhh
Confidence 3566789999999999987777666554433 4677777777654432 2334469999999999876 2 5778
Q ss_pred CcEEeecchhhhhcCCChh------hHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccccc
Q 047490 92 IKYLVLDEADTMFDRGFGP------DIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHK 165 (323)
Q Consensus 92 ~~~vIiDE~h~~~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (323)
+++.|+||.|.+.+. .+. .++.|...+-. +++++++|..+.+.-.- + ++.....+-......
T Consensus 1254 v~l~i~d~lh~igg~-~g~v~evi~S~r~ia~q~~k--------~ir~v~ls~~lana~d~-i--g~s~~~v~Nf~p~~R 1321 (1674)
T KOG0951|consen 1254 VDLFIVDELHLIGGV-YGAVYEVICSMRYIASQLEK--------KIRVVALSSSLANARDL-I--GASSSGVFNFSPSVR 1321 (1674)
T ss_pred cceEeeehhhhhccc-CCceEEEEeeHHHHHHHHHh--------heeEEEeehhhccchhh-c--cccccceeecCcccC
Confidence 999999999998742 222 25555555544 34999999988755432 1 111111111111111
Q ss_pred cccccee-eEEeccCChhHHHHHH----HHhccCCCCCCeEEEEecCcccHHHHHHHHhh--------------------
Q 047490 166 KIASARH-DFIKLSGSENKLEALL----QVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE-------------------- 220 (323)
Q Consensus 166 ~~~~~~~-~~~~~~~~~~k~~~l~----~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~-------------------- 220 (323)
..+-..+ +-......+..+.... ..+.++-..+++.+||++++++|..++-.+-.
T Consensus 1322 ~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~ 1401 (1674)
T KOG0951|consen 1322 PVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDET 1401 (1674)
T ss_pred CCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHh
Confidence 1111111 1112222222222222 22333334678999999999999877654421
Q ss_pred --CCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCCCCCEEEEcCC-----------CCCchhhhhhh
Q 047490 221 --NQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDF-----------PLNSIDYLHRT 287 (323)
Q Consensus 221 --~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~~~~~vi~~~~-----------p~s~~~~~Q~~ 287 (323)
...+.++-|.++++....-+..-|.. |.++++|.... ..|+....+.||.+|. +.+..+..|++
T Consensus 1402 l~e~l~~gvg~e~~s~~d~~iv~~l~e~--g~i~v~v~s~~-~~~~~~~~~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~ 1478 (1674)
T KOG0951|consen 1402 LRESLKHGVGHEGLSSNDQEIVQQLFEA--GAIQVCVMSRD-CYGTKLKAHLVVVMGTQYYDGKEHSYEDYPIAELLQMV 1478 (1674)
T ss_pred hhhcccccccccccCcchHHHHHHHHhc--CcEEEEEEEcc-cccccccceEEEEecceeecccccccccCchhHHHHHh
Confidence 12233334889999999999999999 99999999888 8898887777777653 34677889999
Q ss_pred cccccCCCcceEEEEeeCCcHHHHHHH
Q 047490 288 GRTARMGAKGKVTSLVAKKDVLLADRI 314 (323)
Q Consensus 288 GR~~R~~~~g~~~~~~~~~~~~~~~~i 314 (323)
|++.| .|+|++++...+.+..+++
T Consensus 1479 G~a~~---~~k~vi~~~~~~k~yykkf 1502 (1674)
T KOG0951|consen 1479 GLASG---AGKCVIMCHTPKKEYYKKF 1502 (1674)
T ss_pred hhhcC---CccEEEEecCchHHHHHHh
Confidence 99988 5799999998877766543
|
|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.38 E-value=1e-11 Score=93.25 Aligned_cols=120 Identities=35% Similarity=0.516 Sum_probs=86.0
Q ss_pred ccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCC
Q 047490 12 LMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGD 91 (323)
Q Consensus 12 ~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~ 91 (323)
....+.++++|++|+..++.|+.+.+..+... +..+..+.++............+.+|+++|++.+.............
T Consensus 25 ~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~ 103 (144)
T cd00046 25 LDSLKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKK 103 (144)
T ss_pred HhcccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHHhcCCCCEEEECcHHHHHHHHcCCcchhc
Confidence 33346789999999999999999999998764 56676676665544444344556899999999999888776656778
Q ss_pred CcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeec
Q 047490 92 IKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATM 140 (323)
Q Consensus 92 ~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~ 140 (323)
++++|+||+|.+................. ...+++++||||
T Consensus 104 ~~~iiiDE~h~~~~~~~~~~~~~~~~~~~--------~~~~~i~~saTp 144 (144)
T cd00046 104 LDLLILDEAHRLLNQGFGLLGLKILLKLP--------KDRQVLLLSATP 144 (144)
T ss_pred CCEEEEeCHHHHhhcchHHHHHHHHhhCC--------ccceEEEEeccC
Confidence 99999999999876543332211111111 133899999996
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
Probab=99.37 E-value=1e-10 Score=112.53 Aligned_cols=103 Identities=20% Similarity=0.285 Sum_probs=75.6
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCC--CeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-C--CCEE
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNENQ--ISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-D--VDHV 271 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~~--~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~--~~~v 271 (323)
.++++|||+++....+.+++.|.... .....+..+.. ..|..++++|++ ++..||++|..+.+|+|+ + +..|
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~q~~~-~~r~~ll~~F~~--~~~~iLlgt~sf~EGVD~~g~~l~~v 749 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLAQGIN-GSRAKIKKRFNN--GEKAILLGTSSFWEGVDFPGNGLVCL 749 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEecCCC-ccHHHHHHHHHh--CCCeEEEEcceeecccccCCCceEEE
Confidence 45799999999999999999987521 11223333333 478889999998 888899999999999999 5 5578
Q ss_pred EEcCCCC------------------------------CchhhhhhhcccccCCC-cceEEEE
Q 047490 272 IMFDFPL------------------------------NSIDYLHRTGRTARMGA-KGKVTSL 302 (323)
Q Consensus 272 i~~~~p~------------------------------s~~~~~Q~~GR~~R~~~-~g~~~~~ 302 (323)
|+.+.|. ....+.|.+||+-|..+ .|.++++
T Consensus 750 iI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~il 811 (850)
T TIGR01407 750 VIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVIL 811 (850)
T ss_pred EEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEE
Confidence 8887663 11235699999999864 4444433
|
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. |
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.3e-11 Score=112.54 Aligned_cols=171 Identities=16% Similarity=0.174 Sum_probs=128.0
Q ss_pred eEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccH
Q 047490 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSS 211 (323)
Q Consensus 132 ~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~ 211 (323)
++-+||+|...+..++.+-+......++.-.......... .+. .....|..++.+-+......|.|+||-+.|....
T Consensus 565 kLsGMTGTA~tea~Ef~~IY~L~Vv~IPTnrP~~R~D~~D--~vy-~t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~S 641 (1112)
T PRK12901 565 KLAGMTGTAETEAGEFWDIYKLDVVVIPTNRPIARKDKED--LVY-KTKREKYNAVIEEITELSEAGRPVLVGTTSVEIS 641 (1112)
T ss_pred hhcccCCCCHHHHHHHHHHhCCCEEECCCCCCcceecCCC--eEe-cCHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHH
Confidence 6788999997776665555544443333222111111111 121 2356788899888877778999999999999999
Q ss_pred HHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCCCCC---------EEEEcCCCCCchh
Q 047490 212 RAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLDVD---------HVIMFDFPLNSID 282 (323)
Q Consensus 212 ~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~~~~---------~vi~~~~p~s~~~ 282 (323)
+.+++.|+..+++..+++......+-+-+.+.-+. |. |-|||+.+++|.|+.+. +||-...+.|.+.
T Consensus 642 E~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~--Ga--VTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRI 717 (1112)
T PRK12901 642 ELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQP--GT--VTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRV 717 (1112)
T ss_pred HHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCC--Cc--EEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHH
Confidence 99999999999888888777665555555555554 65 89999999999998322 7888899999999
Q ss_pred hhhhhcccccCCCcceEEEEeeCCcHH
Q 047490 283 YLHRTGRTARMGAKGKVTSLVAKKDVL 309 (323)
Q Consensus 283 ~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 309 (323)
..|..||+||.|.+|.+..+++..|.-
T Consensus 718 D~QLrGRaGRQGDPGsS~f~lSLEDdL 744 (1112)
T PRK12901 718 DRQLRGRAGRQGDPGSSQFYVSLEDNL 744 (1112)
T ss_pred HHHHhcccccCCCCCcceEEEEcccHH
Confidence 999999999999999999999976653
|
|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=99.22 E-value=9e-10 Score=104.82 Aligned_cols=115 Identities=20% Similarity=0.217 Sum_probs=80.8
Q ss_pred HHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEeccccccc
Q 047490 185 EALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGL 264 (323)
Q Consensus 185 ~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gi 264 (323)
+.+.+.+......+++++|+++|.+..+.+++.|......+ ..-|... .+..++++|++ ++-.||++|..+.+|+
T Consensus 634 ~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~--~~~~vLlG~~sFwEGV 708 (820)
T PRK07246 634 EEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDR--GEQQILLGLGSFWEGV 708 (820)
T ss_pred HHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHc--CCCeEEEecchhhCCC
Confidence 34555443333457899999999999999999987654444 4444322 34568999998 7777999999999999
Q ss_pred CC-C--CCEEEEcCCCC------------------------------CchhhhhhhcccccCCC-cceEEEEee
Q 047490 265 DL-D--VDHVIMFDFPL------------------------------NSIDYLHRTGRTARMGA-KGKVTSLVA 304 (323)
Q Consensus 265 d~-~--~~~vi~~~~p~------------------------------s~~~~~Q~~GR~~R~~~-~g~~~~~~~ 304 (323)
|+ + ...||+...|. -...+.|.+||.-|... .|.++++-.
T Consensus 709 D~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~ 782 (820)
T PRK07246 709 DFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDR 782 (820)
T ss_pred CCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECC
Confidence 98 4 55667777652 12335799999999864 555444443
|
|
| >KOG2340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.1e-10 Score=96.64 Aligned_cols=297 Identities=18% Similarity=0.236 Sum_probs=188.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccce-e-----EEEeecCccC------------Ccccccc--------------
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARF-R-----STMVSGGGRL------------RPQEDSL-------------- 64 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~-~-----~~~~~~~~~~------------~~~~~~~-------------- 64 (323)
.|+||||||+++-|-.+.+.+..++...+. + -..+.|+... .+....+
T Consensus 293 RpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~f 372 (698)
T KOG2340|consen 293 RPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAF 372 (698)
T ss_pred CceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHH
Confidence 589999999999999999999998544322 1 1112221110 0000000
Q ss_pred ----------CCCCCEEEeChHHHHHHHHcC------CCCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCC
Q 047490 65 ----------NNPIDMVVGTPGRILQHIEDG------NMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNG 128 (323)
Q Consensus 65 ----------~~~~~Iii~Tp~~l~~~~~~~------~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~ 128 (323)
....+|+||+|--|.-++... .-+++.+.++|+|.+|.++.+. .+++..++..+........+
T Consensus 373 tkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QN-wEhl~~ifdHLn~~P~k~h~ 451 (698)
T KOG2340|consen 373 TKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQN-WEHLLHIFDHLNLQPSKQHD 451 (698)
T ss_pred HHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhh-HHHHHHHHHHhhcCcccccC
Confidence 123689999998887777632 2347889999999999998754 46777777766555444333
Q ss_pred CC----------------ceEEEEEeecchhhHHHHHHHhcCceeeecc-------ccccccccceeeEEecc------C
Q 047490 129 QG----------------FQTVLVSATMTKAVQKLVDEECQGIAHLRTS-------TLHKKIASARHDFIKLS------G 179 (323)
Q Consensus 129 ~~----------------~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~------~ 179 (323)
.+ .|.+++|+--.+.....+..+|.+..-.... ........+.+.|..+. .
T Consensus 452 ~DfSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~ 531 (698)
T KOG2340|consen 452 VDFSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIET 531 (698)
T ss_pred CChhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccC
Confidence 33 2566666666666666666665543211100 11111111122221111 1
Q ss_pred ChhHHHHHHHHhccCCC--CCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEe
Q 047490 180 SENKLEALLQVLEPSLS--KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257 (323)
Q Consensus 180 ~~~k~~~l~~~l~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t 257 (323)
.+.+..-+...+-..+. ....+|||.|+--..-++...+++.......+|.-.++.......+.|-. |+.++|+-|
T Consensus 532 ~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~q--gr~~vlLyT 609 (698)
T KOG2340|consen 532 PDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQ--GRKSVLLYT 609 (698)
T ss_pred chHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHh--cCceEEEEe
Confidence 23344444433332221 23578999999999999999999888777767776666666777888999 999999999
Q ss_pred ccc--ccccCC-CCCEEEEcCCCCCchhhh---hhhcccccCC----CcceEEEEeeCCcHHHHHHHHH
Q 047490 258 DLA--ARGLDL-DVDHVIMFDFPLNSIDYL---HRTGRTARMG----AKGKVTSLVAKKDVLLADRIEE 316 (323)
Q Consensus 258 ~~~--~~Gid~-~~~~vi~~~~p~s~~~~~---Q~~GR~~R~~----~~g~~~~~~~~~~~~~~~~i~~ 316 (323)
.-+ -+--++ ++..||+|.+|.++.-|. .+.+|..-.| ....|.+++++-|.-.+..+.-
T Consensus 610 ER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~ivG 678 (698)
T KOG2340|consen 610 ERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIVG 678 (698)
T ss_pred hhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhhh
Confidence 753 334578 899999999999877664 5555554333 2357999999999887777654
|
|
| >TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.8e-10 Score=103.40 Aligned_cols=92 Identities=21% Similarity=0.221 Sum_probs=69.0
Q ss_pred EEEecCcccHHHHHHHHhhC------CCeeEEecCCCCHHHHHHHHHhc---c-------------------cc--CCCC
Q 047490 202 MVFCNTLNSSRAVDHFLNEN------QISTVNYHGEVPAQERVENLNKF---K-------------------NE--DGDC 251 (323)
Q Consensus 202 lvf~~~~~~~~~l~~~l~~~------~~~~~~~~~~~~~~~r~~~~~~f---~-------------------~~--~g~~ 251 (323)
+|-.++.+.+-.+++.|-.. .+.+++||+..+...|..+.+.. - +. .+..
T Consensus 760 liR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~ 839 (1110)
T TIGR02562 760 LIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHL 839 (1110)
T ss_pred EEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCC
Confidence 67788888888887777543 23467899998877776554332 1 11 1456
Q ss_pred CEEEEecccccccCCCCCEEEEcCCCCCchhhhhhhcccccCCC
Q 047490 252 PTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGA 295 (323)
Q Consensus 252 ~ilv~t~~~~~Gid~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~ 295 (323)
.|+|+|++.+.|+|++++.+|. -|.+....+|++||+.|.+.
T Consensus 840 ~i~v~Tqv~E~g~D~dfd~~~~--~~~~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 840 FIVLATPVEEVGRDHDYDWAIA--DPSSMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred eEEEEeeeEEEEecccCCeeee--ccCcHHHHHHHhhccccccc
Confidence 7999999999999999997776 46678888999999999874
|
The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc. |
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.4e-10 Score=108.09 Aligned_cols=125 Identities=21% Similarity=0.371 Sum_probs=111.1
Q ss_pred hHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccc
Q 047490 182 NKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAA 261 (323)
Q Consensus 182 ~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~ 261 (323)
.|++.|.=+|.+.+..|.++|||++-.+..+-+-.+|.-+|+.-..+.|....++|+..+++|+.++.-+..+++|...+
T Consensus 1260 GKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSgg 1339 (1958)
T KOG0391|consen 1260 GKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGG 1339 (1958)
T ss_pred chHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCc
Confidence 48888888888888899999999999999999999999999999999999999999999999998545556788999999
Q ss_pred cccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcc--eEEEEeeCC
Q 047490 262 RGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG--KVTSLVAKK 306 (323)
Q Consensus 262 ~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g--~~~~~~~~~ 306 (323)
.|||+ .+|.||+||..||+.--.|.-.|++|.|+.- .+|-+++..
T Consensus 1340 vGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1340 VGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISER 1387 (1958)
T ss_pred cccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccc
Confidence 99999 9999999999999999999999999999644 455566543
|
|
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.8e-08 Score=88.93 Aligned_cols=118 Identities=15% Similarity=0.203 Sum_probs=82.0
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhcccc--CCCCCEEEEecccccccCC------C-
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNE--DGDCPTLVCTDLAARGLDL------D- 267 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~--~g~~~ilv~t~~~~~Gid~------~- 267 (323)
.+++++|.+.+....+.+++.|...-.....+.|+.+ .+...+++|++. .|.-.||++|..+.+|+|+ +
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 5679999999999999999999764323345566543 455678888872 1356799999999999999 1
Q ss_pred ----CCEEEEcCCCC-------------------------CchhhhhhhcccccCCC---cceEEEEeeCCcHHHHHHHH
Q 047490 268 ----VDHVIMFDFPL-------------------------NSIDYLHRTGRTARMGA---KGKVTSLVAKKDVLLADRIE 315 (323)
Q Consensus 268 ----~~~vi~~~~p~-------------------------s~~~~~Q~~GR~~R~~~---~g~~~~~~~~~~~~~~~~i~ 315 (323)
+++||+.-.|. ....+.|-+||.-|... .|.+.++-..-....-+.+.
T Consensus 547 ~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R~~~~yg~~~~ 626 (636)
T TIGR03117 547 KDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGRIHWPYMESWQ 626 (636)
T ss_pred CCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCCCCchhHHHHH
Confidence 88999987662 12335799999999864 45555554443333444433
Q ss_pred H
Q 047490 316 E 316 (323)
Q Consensus 316 ~ 316 (323)
+
T Consensus 627 ~ 627 (636)
T TIGR03117 627 E 627 (636)
T ss_pred H
Confidence 3
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
Probab=99.09 E-value=7.6e-09 Score=95.06 Aligned_cols=266 Identities=11% Similarity=0.150 Sum_probs=158.1
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccC-CCCCEEEeChHHHHHHHHcCCCCCCCCc
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLN-NPIDMVVGTPGRILQHIEDGNMVYGDIK 93 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Iii~Tp~~l~~~~~~~~~~~~~~~ 93 (323)
.+..++|++...++|+.+..+.++...-. + ...+.+.... .+. ...+-++.+.+++.++. ...+.+++
T Consensus 76 ~~~~~VLvVShRrSL~~sL~~rf~~~~l~-g---Fv~Y~d~~~~----~i~~~~~~rLivqIdSL~R~~---~~~l~~yD 144 (824)
T PF02399_consen 76 NPDKSVLVVSHRRSLTKSLAERFKKAGLS-G---FVNYLDSDDY----IIDGRPYDRLIVQIDSLHRLD---GSLLDRYD 144 (824)
T ss_pred CCCCeEEEEEhHHHHHHHHHHHHhhcCCC-c---ceeeeccccc----cccccccCeEEEEehhhhhcc---cccccccC
Confidence 46789999999999999999999876321 1 1122221111 111 12466777777776653 23467799
Q ss_pred EEeecchhhhhcCCChhhH---HHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccc
Q 047490 94 YLVLDEADTMFDRGFGPDI---RKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASA 170 (323)
Q Consensus 94 ~vIiDE~h~~~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (323)
+||+||+-.++..-+.+.+ ..+...+.....+.+ .+|++-|++.+...+++......................
T Consensus 145 vVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak----~VI~~DA~ln~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs 220 (824)
T PF02399_consen 145 VVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAK----TVIVMDADLNDQTVDFLASCRPDENIHVIVNTYASPGFS 220 (824)
T ss_pred EEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCC----eEEEecCCCCHHHHHHHHHhCCCCcEEEEEeeeecCCcc
Confidence 9999999887654332222 222222222222222 899999999999998888764332211111110000000
Q ss_pred eeeEEeccC----------------------------------ChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHH
Q 047490 171 RHDFIKLSG----------------------------------SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDH 216 (323)
Q Consensus 171 ~~~~~~~~~----------------------------------~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~ 216 (323)
....+.... .......+...|...+..|.++-||+.+...++.+++
T Consensus 221 ~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~~L~~gknIcvfsSt~~~~~~v~~ 300 (824)
T PF02399_consen 221 NRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELLARLNAGKNICVFSSTVSFAEIVAR 300 (824)
T ss_pred cceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHHHHHhCCCcEEEEeChHHHHHHHHH
Confidence 000000000 0011123344444444567888899999999999999
Q ss_pred HHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-C--CCEEEEcCCC----CCchhhhhhhcc
Q 047490 217 FLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-D--VDHVIMFDFP----LNSIDYLHRTGR 289 (323)
Q Consensus 217 ~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~--~~~vi~~~~p----~s~~~~~Q~~GR 289 (323)
+.+.....+..++|.-+..+ + +.| ++.+|++-|+++..|+++ . ++-++-|=-| .+.....|++||
T Consensus 301 ~~~~~~~~Vl~l~s~~~~~d---v-~~W----~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgR 372 (824)
T PF02399_consen 301 FCARFTKKVLVLNSTDKLED---V-ESW----KKYDVVIYTPVITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGR 372 (824)
T ss_pred HHHhcCCeEEEEcCCCCccc---c-ccc----cceeEEEEeceEEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHH
Confidence 99888888888888665442 2 223 557799999999999998 4 6666666323 234457899999
Q ss_pred cccCCCcceEEEEee
Q 047490 290 TARMGAKGKVTSLVA 304 (323)
Q Consensus 290 ~~R~~~~g~~~~~~~ 304 (323)
+.... ....+++++
T Consensus 373 vR~l~-~~ei~v~~d 386 (824)
T PF02399_consen 373 VRSLL-DNEIYVYID 386 (824)
T ss_pred HHhhc-cCeEEEEEe
Confidence 96553 444444444
|
It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication |
| >COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.1e-09 Score=101.08 Aligned_cols=283 Identities=15% Similarity=0.162 Sum_probs=180.1
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHH-HHHHHcC------CCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI-LQHIEDG------NMV 88 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l-~~~~~~~------~~~ 88 (323)
.+..+.+++...-|+.--++++.+.....|++++....+.....+..... ++|.++|-..| ++++..+ ...
T Consensus 120 ~gkgVhvVTvNdYLA~RDae~m~~l~~~LGlsvG~~~~~m~~~ek~~aY~--~DItY~TnnElGFDYLRDNm~~~~ee~v 197 (822)
T COG0653 120 AGKGVHVVTVNDYLARRDAEWMGPLYEFLGLSVGVILAGMSPEEKRAAYA--CDITYGTNNELGFDYLRDNMVTSQEEKV 197 (822)
T ss_pred CCCCcEEeeehHHhhhhCHHHHHHHHHHcCCceeeccCCCChHHHHHHHh--cCceeccccccCcchhhhhhhccHHHhh
Confidence 35578888999999998899999999999999999999876555544444 59999998887 4444433 223
Q ss_pred CCCCcEEeecchhhhh----------cCC--C----hhhHHHHHhhhcccc-CCCCCCC---------------------
Q 047490 89 YGDIKYLVLDEADTMF----------DRG--F----GPDIRKFLVPLKNRA-SKPNGQG--------------------- 130 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~----------~~~--~----~~~~~~i~~~~~~~~-~~~~~~~--------------------- 130 (323)
...+.+.|+||++.++ ++. . ...+..++..+.... ...+..+
T Consensus 198 qr~~~faIvDEvDSILIDEARtPLiISG~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~ 277 (822)
T COG0653 198 QRGLNFAIVDEVDSILIDEARTPLIISGPAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIEN 277 (822)
T ss_pred hccCCeEEEcchhheeeeccccceeeecccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCccc
Confidence 4568899999999854 110 1 111222221111110 0000000
Q ss_pred --------------------------------------------------------------------------------
Q 047490 131 -------------------------------------------------------------------------------- 130 (323)
Q Consensus 131 -------------------------------------------------------------------------------- 130 (323)
T Consensus 278 Ly~~en~~~~h~~~~alrA~~l~~~D~dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITf 357 (822)
T COG0653 278 LYDLENVNLVHHLNQALRAHILFFRDVDYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITF 357 (822)
T ss_pred ccchhhHHHHhhHHHHHHHHHHhhcCCeeEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhH
Confidence
Q ss_pred -------ceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEE
Q 047490 131 -------FQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMV 203 (323)
Q Consensus 131 -------~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lv 203 (323)
.++.+||+|...+..++.+-+......++.-. +.....+.=........|..++++.+......|.|+||
T Consensus 358 Qn~fR~y~kl~gmTGTa~te~~EF~~iY~l~vv~iPTnr---p~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLv 434 (822)
T COG0653 358 QNLFRLYPKLAGMTGTADTEEEEFDVIYGLDVVVIPTNR---PIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLV 434 (822)
T ss_pred HHHHhhhhhhcCCCCcchhhhhhhhhccCCceeeccCCC---cccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEE
Confidence 02222222222222222222222222221111 11111111111122456888888888887789999999
Q ss_pred EecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC--CCC----------EE
Q 047490 204 FCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL--DVD----------HV 271 (323)
Q Consensus 204 f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~--~~~----------~v 271 (323)
-+.+....+.+.+.|.+.+++..++.......+-+.+.+.-+. |. +-|||+.+++|-|+ +-. +|
T Consensus 435 gT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~EA~Iia~AG~~--ga--VTiATNMAGRGTDIkLg~~~~~V~~lGGL~V 510 (822)
T COG0653 435 GTVSIEKSELLSKLLRKAGIPHNVLNAKNHAREAEIIAQAGQP--GA--VTIATNMAGRGTDIKLGGNPEFVMELGGLHV 510 (822)
T ss_pred cCcceecchhHHHHHHhcCCCceeeccccHHHHHHHHhhcCCC--Cc--cccccccccCCcccccCCCHHHHHHhCCcEE
Confidence 9999999999999999999998888888776666666665555 55 78999999999998 332 45
Q ss_pred EEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCc
Q 047490 272 IMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307 (323)
Q Consensus 272 i~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 307 (323)
|-...-.|.+.--|..||+||.|-+|..-.+++..|
T Consensus 511 IgTERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD 546 (822)
T COG0653 511 IGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 546 (822)
T ss_pred EecccchhhHHHHHhhcccccCCCcchhhhhhhhHH
Confidence 555555677777799999999999998887777544
|
|
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.6e-10 Score=79.96 Aligned_cols=109 Identities=17% Similarity=0.159 Sum_probs=62.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEe
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLV 96 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vI 96 (323)
+.++|||.||+.++..+.+.++.. ..+...-.-. ....++.-|-++|...+.+.+.+ .....++++||
T Consensus 33 ~~rvLvL~PTRvva~em~~aL~~~----~~~~~t~~~~-------~~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II 100 (148)
T PF07652_consen 33 RLRVLVLAPTRVVAEEMYEALKGL----PVRFHTNARM-------RTHFGSSIIDVMCHATYGHFLLN-PCRLKNYDVII 100 (148)
T ss_dssp T--EEEEESSHHHHHHHHHHTTTS----SEEEESTTSS-----------SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEE
T ss_pred cCeEEEecccHHHHHHHHHHHhcC----CcccCceeee-------ccccCCCcccccccHHHHHHhcC-cccccCccEEE
Confidence 679999999999999988877544 2222211110 12234457889999999887766 55578999999
Q ss_pred ecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhH
Q 047490 97 LDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQ 145 (323)
Q Consensus 97 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~ 145 (323)
+||||-. .+........+...... ....+|++|||||....
T Consensus 101 ~DEcH~~-----Dp~sIA~rg~l~~~~~~---g~~~~i~mTATPPG~~~ 141 (148)
T PF07652_consen 101 MDECHFT-----DPTSIAARGYLRELAES---GEAKVIFMTATPPGSED 141 (148)
T ss_dssp ECTTT-------SHHHHHHHHHHHHHHHT---TS-EEEEEESS-TT---
T ss_pred EeccccC-----CHHHHhhheeHHHhhhc---cCeeEEEEeCCCCCCCC
Confidence 9999942 22222222222222111 12479999999987654
|
The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A .... |
| >COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.3e-08 Score=96.64 Aligned_cols=274 Identities=15% Similarity=0.142 Sum_probs=149.4
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCC-CCCEEEeChHHHHHHHHcCC--CCCC
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNN-PIDMVVGTPGRILQHIEDGN--MVYG 90 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Iii~Tp~~l~~~~~~~~--~~~~ 90 (323)
....|.+++||.+++|-.|+.+.+..+........ ...+...-.+.+.+ ...|+|||-++|-....... ....
T Consensus 300 ~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~ 375 (962)
T COG0610 300 LPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKR 375 (962)
T ss_pred ccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHHHHHhcCCCcEEEEEecccchhhhcccccccCC
Confidence 37789999999999999999999999975432211 11112222233332 34899999999987775531 1122
Q ss_pred CCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHH-HHHHhcCceeeecccccccccc
Q 047490 91 DIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKL-VDEECQGIAHLRTSTLHKKIAS 169 (323)
Q Consensus 91 ~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 169 (323)
+=-.||+||||+... +.....+-..++.. ..+++|+||.-..... .....+.+.+............
T Consensus 376 ~~ivvI~DEaHRSQ~---G~~~~~~~~~~~~a---------~~~gFTGTPi~~~d~~tt~~~fg~ylh~Y~i~daI~Dg~ 443 (962)
T COG0610 376 KNVVVIIDEAHRSQY---GELAKLLKKALKKA---------IFIGFTGTPIFKEDKDTTKDVFGDYLHTYTITDAIRDGA 443 (962)
T ss_pred CcEEEEEechhhccc---cHHHHHHHHHhccc---------eEEEeeCCccccccccchhhhhcceeEEEecchhhccCc
Confidence 233789999998643 44444444444432 7999999995332222 1111222211111111111000
Q ss_pred c-eeeEEec---cC---------------------------------------ChhHH----HHHHHHhccCCCCCCeEE
Q 047490 170 A-RHDFIKL---SG---------------------------------------SENKL----EALLQVLEPSLSKGNKVM 202 (323)
Q Consensus 170 ~-~~~~~~~---~~---------------------------------------~~~k~----~~l~~~l~~~~~~~~~~l 202 (323)
. ...|... .. ...+. ..+.+........+.+.+
T Consensus 444 vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~r~~~~a~~i~~~f~~~~~~~~kam 523 (962)
T COG0610 444 VLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLAVRLIRAAKDIYDHFKKEEVFDLKAM 523 (962)
T ss_pred eeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcchHHHHHHHHHHHHHHHhhcccCceEE
Confidence 0 0000000 00 00001 111111111112345777
Q ss_pred EEecCcccHHHHHHHHhhCCC---------e------------eEE--ecCCCCHHHHHHHHHhccccCCCCCEEEEecc
Q 047490 203 VFCNTLNSSRAVDHFLNENQI---------S------------TVN--YHGEVPAQERVENLNKFKNEDGDCPTLVCTDL 259 (323)
Q Consensus 203 vf~~~~~~~~~l~~~l~~~~~---------~------------~~~--~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~ 259 (323)
+.+.++..+..+.+....... . -.. .|.. ..........+|..+....++||.++.
T Consensus 524 ~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~r~~~~~d~~kilIV~dm 602 (962)
T COG0610 524 VVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAK-LKDEKKDLIKRFKLKDDPLDLLIVVDM 602 (962)
T ss_pred EEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHH-HHHHHhhhhhhhcCcCCCCCEEEEEcc
Confidence 777777744444433222100 0 000 0111 122334455565444578899999999
Q ss_pred cccccCCCCCEEEEcCCCCCchhhhhhhcccccCC----CcceEEEEee
Q 047490 260 AARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMG----AKGKVTSLVA 304 (323)
Q Consensus 260 ~~~Gid~~~~~vi~~~~p~s~~~~~Q~~GR~~R~~----~~g~~~~~~~ 304 (323)
+-+|+|.++-+.+..|-|--.....|++-|+.|.- ..|.++.+..
T Consensus 603 lLTGFDaP~L~TmYvDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 603 LLTGFDAPCLNTLYVDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred ccccCCccccceEEeccccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 99999998888888999998999999999999964 2344544444
|
|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2e-08 Score=98.19 Aligned_cols=125 Identities=29% Similarity=0.448 Sum_probs=108.0
Q ss_pred hHHHHHHHHh-ccCCCCCC--eEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEec
Q 047490 182 NKLEALLQVL-EPSLSKGN--KVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258 (323)
Q Consensus 182 ~k~~~l~~~l-~~~~~~~~--~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~ 258 (323)
.|...+.+++ ......+. ++++|++.......+...++..++....++|.++...|...++.|.++++..-+++++.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 5788888888 56666777 99999999999999999999988888999999999999999999998434555677788
Q ss_pred ccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcce--EEEEeeCC
Q 047490 259 LAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGK--VTSLVAKK 306 (323)
Q Consensus 259 ~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~--~~~~~~~~ 306 (323)
+.+.|+|+ .+++||++|+.|++....|+..|+.|.|++.. ++-+++..
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~ 822 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRG 822 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCC
Confidence 99999999 99999999999999999999999999997664 45555544
|
|
| >KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.7e-07 Score=84.87 Aligned_cols=125 Identities=25% Similarity=0.383 Sum_probs=98.8
Q ss_pred HhccCCCCCCeEEEEecCcccHHHHHHHHhhCCC------------------eeEEecCCCCHHHHHHHHHhccccCCCC
Q 047490 190 VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQI------------------STVNYHGEVPAQERVENLNKFKNEDGDC 251 (323)
Q Consensus 190 ~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~------------------~~~~~~~~~~~~~r~~~~~~f~~~~g~~ 251 (323)
++.+....+.++|+|.++......+.+.+.+... .-..+.|..+..+|++.+.+|+.++|--
T Consensus 711 ~~des~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~ls 790 (1387)
T KOG1016|consen 711 ILDESTQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLS 790 (1387)
T ss_pred eeccccccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCce
Confidence 3344444567999999999999988888866321 2234678888899999999999855433
Q ss_pred -CEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHH
Q 047490 252 -PTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314 (323)
Q Consensus 252 -~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i 314 (323)
-++++|.....|+|+ .++.+++++..|++.--.|.+.|+.|-|+...|+++----|...-+.|
T Consensus 791 Wlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkI 855 (1387)
T KOG1016|consen 791 WLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKI 855 (1387)
T ss_pred eeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHH
Confidence 478899999999999 999999999999999999999999999998888887766655444433
|
|
| >KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.1e-08 Score=94.30 Aligned_cols=119 Identities=21% Similarity=0.253 Sum_probs=96.6
Q ss_pred HHHHHHHHhccCCCCC-CeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccc
Q 047490 183 KLEALLQVLEPSLSKG-NKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAA 261 (323)
Q Consensus 183 k~~~l~~~l~~~~~~~-~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~ 261 (323)
|+..+++.+....... .+++||++...-+..+.-.+...++....+.|.|....|.+.+..|..+++..-.+++..+..
T Consensus 523 ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~ 602 (674)
T KOG1001|consen 523 KIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGK 602 (674)
T ss_pred hhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhh
Confidence 4455555554322222 399999999999999988888778888889999999999999999997444444567779999
Q ss_pred cccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEE
Q 047490 262 RGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTS 301 (323)
Q Consensus 262 ~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~ 301 (323)
.|+|+ .+.+|+..|+-||+....|.+.|+.|.|+...+.+
T Consensus 603 ~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 603 VGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred hhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeee
Confidence 99999 99999999999999999999999999997554443
|
|
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.6e-08 Score=83.29 Aligned_cols=113 Identities=17% Similarity=0.167 Sum_probs=70.1
Q ss_pred cEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHc---CCCCCCCCcEE
Q 047490 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIED---GNMVYGDIKYL 95 (323)
Q Consensus 19 ~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~---~~~~~~~~~~v 95 (323)
.+||+||. .+..||.+++.++......++....+...............+++|+|++.+...... ..+..-++++|
T Consensus 60 ~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~v 138 (299)
T PF00176_consen 60 KTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRV 138 (299)
T ss_dssp -EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEE
T ss_pred ceeEeecc-chhhhhhhhhccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeE
Confidence 59999999 888999999999996545677666666412222223334578999999999811000 00112348999
Q ss_pred eecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchh
Q 047490 96 VLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKA 143 (323)
Q Consensus 96 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~ 143 (323)
|+||+|.+-+ ........+..+... ..+++||||...
T Consensus 139 IvDEaH~~k~--~~s~~~~~l~~l~~~---------~~~lLSgTP~~n 175 (299)
T PF00176_consen 139 IVDEAHRLKN--KDSKRYKALRKLRAR---------YRWLLSGTPIQN 175 (299)
T ss_dssp EETTGGGGTT--TTSHHHHHHHCCCEC---------EEEEE-SS-SSS
T ss_pred EEeccccccc--ccccccccccccccc---------eEEeeccccccc
Confidence 9999999843 334444444445432 789999998543
|
g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W. |
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.4e-08 Score=78.56 Aligned_cols=111 Identities=15% Similarity=0.200 Sum_probs=66.9
Q ss_pred cEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecC-----------ccCCccccccCCCCCEEEeChHHHHHHHHcCC-
Q 047490 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGG-----------GRLRPQEDSLNNPIDMVVGTPGRILQHIEDGN- 86 (323)
Q Consensus 19 ~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~- 86 (323)
++++++|+..|+.|+.+.+..+.............. ..............+++++|.+.+........
T Consensus 52 ~~l~~~p~~~l~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~ 131 (184)
T PF04851_consen 52 KVLIVAPNISLLEQWYDEFDDFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKK 131 (184)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---
T ss_pred ceeEecCHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccc
Confidence 899999999999999999977765432111111000 00001111123456899999999987765421
Q ss_pred ----------CCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecch
Q 047490 87 ----------MVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTK 142 (323)
Q Consensus 87 ----------~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~ 142 (323)
......++||+||+|++.... ....++. .. ...+++|||||.+
T Consensus 132 ~~~~~~~~~~~~~~~~~~vI~DEaH~~~~~~---~~~~i~~-~~---------~~~~l~lTATp~r 184 (184)
T PF04851_consen 132 IDESARRSYKLLKNKFDLVIIDEAHHYPSDS---SYREIIE-FK---------AAFILGLTATPFR 184 (184)
T ss_dssp ------GCHHGGGGSESEEEEETGGCTHHHH---HHHHHHH-SS---------CCEEEEEESS-S-
T ss_pred cccchhhhhhhccccCCEEEEehhhhcCCHH---HHHHHHc-CC---------CCeEEEEEeCccC
Confidence 234567899999999865422 1445544 21 2279999999863
|
1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B .... |
| >PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A | Back alignment and domain information |
|---|
Probab=98.46 E-value=5.8e-07 Score=69.30 Aligned_cols=78 Identities=23% Similarity=0.341 Sum_probs=57.4
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCCC--eeEEecCCCCHHHHHHHHHhccccCCCCCEEEEec--ccccccCC-C--CC
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNENQI--STVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD--LAARGLDL-D--VD 269 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~--~~~~Gid~-~--~~ 269 (323)
.++.++||+++....+.+.+.++.... ...++.. +.....++++.|++ ++-.||+++. .+.+|+|+ + ++
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~--~~~~il~~v~~g~~~EGiD~~~~~~r 83 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKR--GEGAILLAVAGGSFSEGIDFPGDLLR 83 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCC--SSSEEEEEETTSCCGSSS--ECESEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHh--ccCeEEEEEecccEEEeecCCCchhh
Confidence 458999999999999999999876532 1122333 35688899999999 7777999998 99999999 5 88
Q ss_pred EEEEcCCCC
Q 047490 270 HVIMFDFPL 278 (323)
Q Consensus 270 ~vi~~~~p~ 278 (323)
.||+.+.|.
T Consensus 84 ~vii~glPf 92 (167)
T PF13307_consen 84 AVIIVGLPF 92 (167)
T ss_dssp EEEEES---
T ss_pred eeeecCCCC
Confidence 999999873
|
|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.3e-06 Score=83.35 Aligned_cols=117 Identities=16% Similarity=0.243 Sum_probs=82.3
Q ss_pred HHHHHHhccCC-CCCCeEEEEecCcccHHHHHHHHhhCCC--eeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccc
Q 047490 185 EALLQVLEPSL-SKGNKVMVFCNTLNSSRAVDHFLNENQI--STVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAA 261 (323)
Q Consensus 185 ~~l~~~l~~~~-~~~~~~lvf~~~~~~~~~l~~~l~~~~~--~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~ 261 (323)
..+.+.+.... ..+++++|+++|.+..+.+++.|+.... ....+.-++....|..++++|++ ++-.||++|..+.
T Consensus 738 ~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~--~~~~iLlG~~sFw 815 (928)
T PRK08074 738 EEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQ--FDKAILLGTSSFW 815 (928)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHh--cCCeEEEecCccc
Confidence 44444443322 2567999999999999999999875422 12233334444567889999998 7777999999999
Q ss_pred cccCC-C--CCEEEEcCCCC------------------------------CchhhhhhhcccccCCC-cceEEEEe
Q 047490 262 RGLDL-D--VDHVIMFDFPL------------------------------NSIDYLHRTGRTARMGA-KGKVTSLV 303 (323)
Q Consensus 262 ~Gid~-~--~~~vi~~~~p~------------------------------s~~~~~Q~~GR~~R~~~-~g~~~~~~ 303 (323)
+|||+ + +.+||+...|. -...+.|.+||+-|..+ .|.++++-
T Consensus 816 EGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD 891 (928)
T PRK08074 816 EGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLD 891 (928)
T ss_pred CccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEec
Confidence 99999 4 68899988663 12234699999999874 45444433
|
|
| >TIGR00596 rad1 DNA repair protein (rad1) | Back alignment and domain information |
|---|
Probab=98.38 E-value=8e-06 Score=77.37 Aligned_cols=66 Identities=11% Similarity=-0.030 Sum_probs=47.1
Q ss_pred CCEEEeChHHHHHHHHcCCCCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecc
Q 047490 68 IDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMT 141 (323)
Q Consensus 68 ~~Iii~Tp~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~ 141 (323)
..|+++||..+...+-.+.+.++.+..+||||||++.+... .-.|+...+.... .--+.++|++|.
T Consensus 8 ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~---eaFI~rlyr~~n~-----~gfIkafSdsP~ 73 (814)
T TIGR00596 8 GGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQ---EAFILRLYRQKNK-----TGFIKAFSDNPE 73 (814)
T ss_pred CCEEEEechhhHhHHhcCCCCHHHccEEEEeeccccccccc---HHHHHHHHHHhCC-----CcceEEecCCCc
Confidence 48999999999988888899999999999999999865321 2223333332221 114778888875
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit |
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.37 E-value=4.2e-06 Score=79.15 Aligned_cols=104 Identities=25% Similarity=0.327 Sum_probs=75.5
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCCCe-eEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-C--CCEEE
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNENQIS-TVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-D--VDHVI 272 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~--~~~vi 272 (323)
.+++++||++|....+.+.+.++..... ....+|.. .+...++.|...... .++|++..+.+|+|+ + +..||
T Consensus 478 ~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~---~~~~~l~~f~~~~~~-~~lv~~gsf~EGVD~~g~~l~~vv 553 (654)
T COG1199 478 SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGED---EREELLEKFKASGEG-LILVGGGSFWEGVDFPGDALRLVV 553 (654)
T ss_pred cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCC---cHHHHHHHHHHhcCC-eEEEeeccccCcccCCCCCeeEEE
Confidence 4559999999999999999999876542 33444543 444788899872222 799999999999999 4 78899
Q ss_pred EcCCCC------------------------------CchhhhhhhcccccCCC-cceEEEEee
Q 047490 273 MFDFPL------------------------------NSIDYLHRTGRTARMGA-KGKVTSLVA 304 (323)
Q Consensus 273 ~~~~p~------------------------------s~~~~~Q~~GR~~R~~~-~g~~~~~~~ 304 (323)
+.+.|. -.....|.+||+-|... .|.++++-.
T Consensus 554 I~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~ 616 (654)
T COG1199 554 IVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDK 616 (654)
T ss_pred EEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecc
Confidence 988773 23345799999999753 344444433
|
|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=8.8e-06 Score=76.85 Aligned_cols=116 Identities=25% Similarity=0.369 Sum_probs=77.9
Q ss_pred HHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhcccc--CCCCCEEEEecccc
Q 047490 184 LEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNE--DGDCPTLVCTDLAA 261 (323)
Q Consensus 184 ~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~--~g~~~ilv~t~~~~ 261 (323)
.+.+.+.+......++.++|++++....+.++..|..........+|.. .+..+++.|++. .++-.||++|..+.
T Consensus 520 ~~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~ 596 (697)
T PRK11747 520 TAEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFA 596 (697)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCCc---hHHHHHHHHHHHhccCCCeEEEEecccc
Confidence 4455554544333455689999999999999998874321223445542 466777666641 15566999999999
Q ss_pred cccCC-C--CCEEEEcCCCCC------------------------------chhhhhhhcccccCCC-cceEEEE
Q 047490 262 RGLDL-D--VDHVIMFDFPLN------------------------------SIDYLHRTGRTARMGA-KGKVTSL 302 (323)
Q Consensus 262 ~Gid~-~--~~~vi~~~~p~s------------------------------~~~~~Q~~GR~~R~~~-~g~~~~~ 302 (323)
+|||+ + +++||+...|.. ...+.|.+||.-|..+ .|.++++
T Consensus 597 EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~il 671 (697)
T PRK11747 597 EGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTIL 671 (697)
T ss_pred ccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEE
Confidence 99999 4 889999887631 1124689999999864 4444333
|
|
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.3e-07 Score=86.73 Aligned_cols=132 Identities=14% Similarity=0.162 Sum_probs=96.3
Q ss_pred hhhhhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHc
Q 047490 5 DEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIED 84 (323)
Q Consensus 5 ~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~ 84 (323)
..++.......++.+++++.|.++|+..-.+.+.......|++++.+.|+...+.. ... .++++|+||+++.....+
T Consensus 961 e~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie~tgd~~pd~~--~v~-~~~~~ittpek~dgi~Rs 1037 (1230)
T KOG0952|consen 961 ELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIELTGDVTPDVK--AVR-EADIVITTPEKWDGISRS 1037 (1230)
T ss_pred HHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccCCceeEeccCccCCChh--hee-cCceEEcccccccCcccc
Confidence 34566667778889999999999999998888888777778999999998776621 222 368999999999888775
Q ss_pred C--CCCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecc
Q 047490 85 G--NMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMT 141 (323)
Q Consensus 85 ~--~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~ 141 (323)
| ...++++..+|+||.|.+.+ ++++.+..+...... .+.....+++.+++|--+.
T Consensus 1038 w~~r~~v~~v~~iv~de~hllg~-~rgPVle~ivsr~n~-~s~~t~~~vr~~glsta~~ 1094 (1230)
T KOG0952|consen 1038 WQTRKYVQSVSLIVLDEIHLLGE-DRGPVLEVIVSRMNY-ISSQTEEPVRYLGLSTALA 1094 (1230)
T ss_pred ccchhhhccccceeecccccccC-CCcceEEEEeecccc-CccccCcchhhhhHhhhhh
Confidence 4 45588999999999998765 455555444443333 2333445677887765543
|
|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.6e-05 Score=72.48 Aligned_cols=121 Identities=20% Similarity=0.257 Sum_probs=79.4
Q ss_pred HHHHHHHhccCCC-CCCeEEEEecCcccHHHHHHHHhhCCC------eeEEecCCCCHHHHHHHHHhcccc--CCCCCEE
Q 047490 184 LEALLQVLEPSLS-KGNKVMVFCNTLNSSRAVDHFLNENQI------STVNYHGEVPAQERVENLNKFKNE--DGDCPTL 254 (323)
Q Consensus 184 ~~~l~~~l~~~~~-~~~~~lvf~~~~~~~~~l~~~l~~~~~------~~~~~~~~~~~~~r~~~~~~f~~~--~g~~~il 254 (323)
...+.+.+.+... .++.++||+++....+.+.+.+...+. ...++..+-...++..++++|++. .+.-.||
T Consensus 507 ~~~l~~~i~~~~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~~~~~~~l~~f~~~~~~~~gavL 586 (705)
T TIGR00604 507 VRNLGELLVEFSKIIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDAQETSDALERYKQAVSEGRGAVL 586 (705)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCcchHHHHHHHHHHHHhcCCceEE
Confidence 3444444433222 468999999999999988887765422 112222222225778899999752 1334589
Q ss_pred EEe--cccccccCC-C--CCEEEEcCCCC-Cc------------------------------hhhhhhhcccccCCCcce
Q 047490 255 VCT--DLAARGLDL-D--VDHVIMFDFPL-NS------------------------------IDYLHRTGRTARMGAKGK 298 (323)
Q Consensus 255 v~t--~~~~~Gid~-~--~~~vi~~~~p~-s~------------------------------~~~~Q~~GR~~R~~~~g~ 298 (323)
+++ ..+.+|||+ + +..||+.+.|. ++ ....|.+||+-|..+.--
T Consensus 587 ~av~gGk~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~G 666 (705)
T TIGR00604 587 LSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDYG 666 (705)
T ss_pred EEecCCcccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCceE
Confidence 999 789999999 5 89999999884 11 223599999999865333
Q ss_pred EEEEee
Q 047490 299 VTSLVA 304 (323)
Q Consensus 299 ~~~~~~ 304 (323)
++++++
T Consensus 667 ~iillD 672 (705)
T TIGR00604 667 SIVLLD 672 (705)
T ss_pred EEEEEe
Confidence 344443
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=4.2e-05 Score=72.92 Aligned_cols=118 Identities=17% Similarity=0.239 Sum_probs=80.2
Q ss_pred hhcccc--CCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcc-ccccC--CCCCEEEeChHHHHHHH
Q 047490 8 MLGVLM--KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ-EDSLN--NPIDMVVGTPGRILQHI 82 (323)
Q Consensus 8 ~~~~~~--~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~Iii~Tp~~l~~~~ 82 (323)
++++++ +.++.--||+|||-.+.+ |.=+|++|.+ ++++...+|.-..... .+.|. +.++|+|+++..++.-+
T Consensus 654 llAhLACeegnWGPHLIVVpTsviLn-WEMElKRwcP--glKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~ 730 (1958)
T KOG0391|consen 654 LLAHLACEEGNWGPHLIVVPTSVILN-WEMELKRWCP--GLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDL 730 (1958)
T ss_pred HHHHHHhcccCCCCceEEeechhhhh-hhHHHhhhCC--cceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHH
Confidence 344443 344556688899988766 5667999987 6688888887543322 22232 34689999999887655
Q ss_pred HcCCCCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecc
Q 047490 83 EDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMT 141 (323)
Q Consensus 83 ~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~ 141 (323)
.. +...+|.|+|+||+|++-+ |...-+..+..+... +.+++|.|+-
T Consensus 731 ~A--FkrkrWqyLvLDEaqnIKn--fksqrWQAllnfnsq---------rRLLLtgTPL 776 (1958)
T KOG0391|consen 731 TA--FKRKRWQYLVLDEAQNIKN--FKSQRWQALLNFNSQ---------RRLLLTGTPL 776 (1958)
T ss_pred HH--HHhhccceeehhhhhhhcc--hhHHHHHHHhccchh---------heeeecCCch
Confidence 43 4567899999999999865 444444444444433 6788888874
|
|
| >KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription] | Back alignment and domain information |
|---|
Probab=97.78 E-value=9.9e-05 Score=68.70 Aligned_cols=105 Identities=20% Similarity=0.266 Sum_probs=81.9
Q ss_pred CCeEEEEecCcccHHHHHHHHhhC-------CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCC
Q 047490 198 GNKVMVFCNTLNSSRAVDHFLNEN-------QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVD 269 (323)
Q Consensus 198 ~~~~lvf~~~~~~~~~l~~~l~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~ 269 (323)
.+-+++|.+-....-.+..++... .+.+...|+.....+..++.+...+ |..+++++|.+.+..+.+ ++.
T Consensus 643 ~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~--gv~kii~stniaetsiTidd~v 720 (1282)
T KOG0921|consen 643 DGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPE--GVTKIILSTNIAETSITIDDVV 720 (1282)
T ss_pred ccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccc--cccccccccceeeEeeeeccee
Confidence 457889999999888888777543 4566778998888888888887777 999999999999998888 777
Q ss_pred EEEEcCCC------------------CCchhhhhhhcccccCCCcceEEEEeeC
Q 047490 270 HVIMFDFP------------------LNSIDYLHRTGRTARMGAKGKVTSLVAK 305 (323)
Q Consensus 270 ~vi~~~~p------------------~s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 305 (323)
.|+..+.- .|.....||.||+||. .+|.|..+++.
T Consensus 721 ~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~ 773 (1282)
T KOG0921|consen 721 YVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSR 773 (1282)
T ss_pred EEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccHH
Confidence 77764321 2555668999999998 67888777664
|
|
| >PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit | Back alignment and domain information |
|---|
Probab=97.77 E-value=4.2e-05 Score=62.13 Aligned_cols=88 Identities=22% Similarity=0.382 Sum_probs=68.0
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCc-cCCccccccC-CCCCEEEeChHHHHHHHHcCCCCCCC
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGG-RLRPQEDSLN-NPIDMVVGTPGRILQHIEDGNMVYGD 91 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~Iii~Tp~~l~~~~~~~~~~~~~ 91 (323)
....|.+|||+.+--.+.++.+.++.+... +..+..+++-- ...++...+. ...+|.||||+++..++..+.+.+++
T Consensus 123 ~~gsP~~lvvs~SalRa~dl~R~l~~~~~k-~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~ 201 (252)
T PF14617_consen 123 EKGSPHVLVVSSSALRAADLIRALRSFKGK-DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSN 201 (252)
T ss_pred CCCCCEEEEEcchHHHHHHHHHHHHhhccC-CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCccc
Confidence 455799999999999999999999988432 12344444332 4445555554 46799999999999999999999999
Q ss_pred CcEEeecchhh
Q 047490 92 IKYLVLDEADT 102 (323)
Q Consensus 92 ~~~vIiDE~h~ 102 (323)
+.+||+|--|.
T Consensus 202 l~~ivlD~s~~ 212 (252)
T PF14617_consen 202 LKRIVLDWSYL 212 (252)
T ss_pred CeEEEEcCCcc
Confidence 99999998764
|
|
| >smart00492 HELICc3 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00045 Score=51.41 Aligned_cols=50 Identities=20% Similarity=0.258 Sum_probs=37.3
Q ss_pred EecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-C--CCEEEEcCCC
Q 047490 227 NYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-D--VDHVIMFDFP 277 (323)
Q Consensus 227 ~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~--~~~vi~~~~p 277 (323)
++..+....+..+++++|+++ ++..||+++..+.+|+|+ + +..||+.+.|
T Consensus 26 i~~e~~~~~~~~~~l~~f~~~-~~~~iL~~~~~~~EGiD~~g~~~r~vii~glP 78 (141)
T smart00492 26 LLVQGEDGKETGKLLEKYVEA-CENAILLATARFSEGVDFPGDYLRAVIIDGLP 78 (141)
T ss_pred EEEeCCChhHHHHHHHHHHHc-CCCEEEEEccceecceecCCCCeeEEEEEecC
Confidence 344445555678889999872 222699999889999999 4 7889998877
|
|
| >PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0002 Score=59.01 Aligned_cols=96 Identities=14% Similarity=0.223 Sum_probs=69.5
Q ss_pred hhhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHH-HHHHHcC
Q 047490 7 AMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI-LQHIEDG 85 (323)
Q Consensus 7 ~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l-~~~~~~~ 85 (323)
+|++.+..-.|..|=|++.+..|+..-++++..++..+|+++....++.....+..... ++|+++|...| .+++...
T Consensus 108 ~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~~LGlsv~~~~~~~~~~~r~~~Y~--~dI~Y~t~~~~~fD~Lrd~ 185 (266)
T PF07517_consen 108 ALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYEFLGLSVGIITSDMSSEERREAYA--ADIVYGTNSEFGFDYLRDN 185 (266)
T ss_dssp HHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHHHTT--EEEEETTTEHHHHHHHHH--SSEEEEEHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHHHhhhccccCccccCHHHHHHHHh--CcccccccchhhHHHHHHH
Confidence 34444444457789999999999999999999999999999999999876544333333 58999999998 3445442
Q ss_pred C------CCCCCCcEEeecchhhhh
Q 047490 86 N------MVYGDIKYLVLDEADTMF 104 (323)
Q Consensus 86 ~------~~~~~~~~vIiDE~h~~~ 104 (323)
. ...+.++++|+||+|.++
T Consensus 186 ~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 186 LALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp T-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HhhccchhccCCCCEEEEeccceEE
Confidence 1 125678999999999875
|
SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A .... |
| >smart00491 HELICc2 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00076 Score=50.27 Aligned_cols=43 Identities=26% Similarity=0.368 Sum_probs=31.4
Q ss_pred HHHHHHHHhccccCC-CCCEEEEecc--cccccCC-C--CCEEEEcCCC
Q 047490 235 QERVENLNKFKNEDG-DCPTLVCTDL--AARGLDL-D--VDHVIMFDFP 277 (323)
Q Consensus 235 ~~r~~~~~~f~~~~g-~~~ilv~t~~--~~~Gid~-~--~~~vi~~~~p 277 (323)
.+..+++++|++... .-.||+++.- +.+|+|+ + +..||+.+.|
T Consensus 31 ~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glP 79 (142)
T smart00491 31 GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIP 79 (142)
T ss_pred chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecC
Confidence 344678888886211 0258888876 9999999 5 7899998877
|
|
| >PF13871 Helicase_C_4: Helicase_C-like | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0006 Score=56.23 Aligned_cols=79 Identities=16% Similarity=0.317 Sum_probs=59.1
Q ss_pred HHHHhccccCCCCCEEEEecccccccCCCCC---------EEEEcCCCCCchhhhhhhcccccCCCc-ceEEEEeeC---
Q 047490 239 ENLNKFKNEDGDCPTLVCTDLAARGLDLDVD---------HVIMFDFPLNSIDYLHRTGRTARMGAK-GKVTSLVAK--- 305 (323)
Q Consensus 239 ~~~~~f~~~~g~~~ilv~t~~~~~Gid~~~~---------~vi~~~~p~s~~~~~Q~~GR~~R~~~~-g~~~~~~~~--- 305 (323)
...+.|.+ |+..|+|.+.+.+.|+.++++ .-|...+|||....+|..||++|.++. ...+.++..
T Consensus 52 ~e~~~F~~--g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~ 129 (278)
T PF13871_consen 52 AEKQAFMD--GEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLP 129 (278)
T ss_pred HHHHHHhC--CCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCH
Confidence 45678999 999999999999999998432 466788999999999999999999973 344444432
Q ss_pred CcHHHHHHHHHHHH
Q 047490 306 KDVLLADRIEEAIR 319 (323)
Q Consensus 306 ~~~~~~~~i~~~l~ 319 (323)
.|...+..+.+-|+
T Consensus 130 gE~Rfas~va~rL~ 143 (278)
T PF13871_consen 130 GERRFASTVARRLE 143 (278)
T ss_pred HHHHHHHHHHHHHh
Confidence 35555555555443
|
|
| >PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0032 Score=52.37 Aligned_cols=118 Identities=18% Similarity=0.124 Sum_probs=70.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCC---CCC----
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGN---MVY---- 89 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~---~~~---- 89 (323)
..+.|++..+.+|-.+..+.++..+.. .+.+..+..-... . ...+ +-.|+++|+..|..-..... ..+
T Consensus 91 r~r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~~~~-~-~~~~--~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~ 165 (303)
T PF13872_consen 91 RKRAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKFKYG-D-IIRL--KEGVLFSTYSTLISESQSGGKYRSRLDQLV 165 (303)
T ss_pred CCceEEEECChhhhhHHHHHHHHhCCC-cccceechhhccC-c-CCCC--CCCccchhHHHHHhHHhccCCccchHHHHH
Confidence 358999999999999999999988754 3444433321111 0 0111 23799999998876543211 100
Q ss_pred ----CC-CcEEeecchhhhhcCCC----hhhHHHHHhhhccccCCCCCCCceEEEEEeecchhh
Q 047490 90 ----GD-IKYLVLDEADTMFDRGF----GPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAV 144 (323)
Q Consensus 90 ----~~-~~~vIiDE~h~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~ 144 (323)
.+ =.+||+||||..-+... ..........+....++. +++.+|||...+.
T Consensus 166 ~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~A-----RvvY~SATgasep 224 (303)
T PF13872_consen 166 DWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNA-----RVVYASATGASEP 224 (303)
T ss_pred HHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCC-----cEEEecccccCCC
Confidence 12 24899999999865432 123333333343333222 7999999986443
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0047 Score=58.59 Aligned_cols=99 Identities=16% Similarity=0.242 Sum_probs=77.5
Q ss_pred EEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhh-CCCeeEEecCCCCHHHHHHHHHhccccCCCCC
Q 047490 174 FIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE-NQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252 (323)
Q Consensus 174 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ 252 (323)
......+..|....+..+.+....+.++|+.+|+...+..+.+.|++ .+..+..+||+++..++.+.+.+..+ |..+
T Consensus 166 Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~--g~~~ 243 (679)
T PRK05580 166 LLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKR--GEAK 243 (679)
T ss_pred EEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHc--CCCC
Confidence 33344566788777766666556688999999999999999999876 47789999999999999999999888 8889
Q ss_pred EEEEecccccccCC-CCCEEEEcC
Q 047490 253 TLVCTDLAARGLDL-DVDHVIMFD 275 (323)
Q Consensus 253 ilv~t~~~~~Gid~-~~~~vi~~~ 275 (323)
|+|+|.... -..+ ++..+|.-+
T Consensus 244 IVVgTrsal-~~p~~~l~liVvDE 266 (679)
T PRK05580 244 VVIGARSAL-FLPFKNLGLIIVDE 266 (679)
T ss_pred EEEeccHHh-cccccCCCEEEEEC
Confidence 999997432 2456 677766543
|
|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0023 Score=60.10 Aligned_cols=97 Identities=15% Similarity=0.249 Sum_probs=81.8
Q ss_pred EEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC-CCeeEEecCCCCHHHHHHHHHhccccCCCCC
Q 047490 174 FIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN-QISTVNYHGEVPAQERVENLNKFKNEDGDCP 252 (323)
Q Consensus 174 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ 252 (323)
...-..+..|.+..++.+.+.+.+|+.+|+.+|.......+.+.|+.. +.++..+|+++++.+|.+.+.+... |+.+
T Consensus 221 Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~--G~~~ 298 (730)
T COG1198 221 LLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARR--GEAR 298 (730)
T ss_pred eEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhc--CCce
Confidence 344455778999999999999899999999999999999998888754 8899999999999999999999999 9999
Q ss_pred EEEEecccccccCC-CCCEEEE
Q 047490 253 TLVCTDLAARGLDL-DVDHVIM 273 (323)
Q Consensus 253 ilv~t~~~~~Gid~-~~~~vi~ 273 (323)
|+|+|..+- -.-+ ++..+|.
T Consensus 299 vVIGtRSAl-F~Pf~~LGLIIv 319 (730)
T COG1198 299 VVIGTRSAL-FLPFKNLGLIIV 319 (730)
T ss_pred EEEEechhh-cCchhhccEEEE
Confidence 999997543 2345 6666665
|
|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0049 Score=57.90 Aligned_cols=92 Identities=14% Similarity=0.126 Sum_probs=78.8
Q ss_pred ChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC-C-CeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEe
Q 047490 180 SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN-Q-ISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257 (323)
Q Consensus 180 ~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~-~-~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t 257 (323)
+..|.+..++++...+..|+++||.++....+..+.+.|++. + ..+..+|+++++.+|.+.+....+ |+.+|+|+|
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~--G~~~IViGt 247 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLR--GQARVVVGT 247 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhC--CCCcEEEEc
Confidence 467999999999888888999999999999999999999865 3 578999999999999999999998 999999999
Q ss_pred cccccccCC-CCCEEEEc
Q 047490 258 DLAARGLDL-DVDHVIMF 274 (323)
Q Consensus 258 ~~~~~Gid~-~~~~vi~~ 274 (323)
.... -..+ ++..+|..
T Consensus 248 RSAv-FaP~~~LgLIIvd 264 (665)
T PRK14873 248 RSAV-FAPVEDLGLVAIW 264 (665)
T ss_pred ceeE-EeccCCCCEEEEE
Confidence 7643 3456 67777764
|
|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0036 Score=57.14 Aligned_cols=93 Identities=20% Similarity=0.268 Sum_probs=73.9
Q ss_pred CChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC-CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEe
Q 047490 179 GSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN-QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257 (323)
Q Consensus 179 ~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t 257 (323)
.+..|....+..+......++++|+.+|+...+..+++.|++. +..+..+||+++..+|.+.+.+..+ |+.+|+|+|
T Consensus 6 TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~--g~~~IVVGT 83 (505)
T TIGR00595 6 TGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKN--GEILVVIGT 83 (505)
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHc--CCCCEEECC
Confidence 3556777766666555567889999999999999999988764 6778999999999999999988888 888999999
Q ss_pred cccccccCC-CCCEEEEc
Q 047490 258 DLAARGLDL-DVDHVIMF 274 (323)
Q Consensus 258 ~~~~~Gid~-~~~~vi~~ 274 (323)
...- -..+ ++..||.-
T Consensus 84 rsal-f~p~~~l~lIIVD 100 (505)
T TIGR00595 84 RSAL-FLPFKNLGLIIVD 100 (505)
T ss_pred hHHH-cCcccCCCEEEEE
Confidence 7533 2456 77777754
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0073 Score=57.45 Aligned_cols=98 Identities=14% Similarity=0.173 Sum_probs=73.9
Q ss_pred EEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhh----CCCeeEEecCCCCHHHHHHHHHhccccCC
Q 047490 174 FIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE----NQISTVNYHGEVPAQERVENLNKFKNEDG 249 (323)
Q Consensus 174 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~g 249 (323)
....+.+..|.....-.+......+.++++.+|++..|...++.++. .+..+..+||+++..++.++++...+ |
T Consensus 286 Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~--g 363 (681)
T PRK10917 286 LLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIAS--G 363 (681)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhC--C
Confidence 34444455666544333333334678999999999999888777654 36889999999999999999999998 9
Q ss_pred CCCEEEEecc-cccccCC-CCCEEEE
Q 047490 250 DCPTLVCTDL-AARGLDL-DVDHVIM 273 (323)
Q Consensus 250 ~~~ilv~t~~-~~~Gid~-~~~~vi~ 273 (323)
...|+|+|.. +...+.+ ++..||.
T Consensus 364 ~~~IvVgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 364 EADIVIGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred CCCEEEchHHHhcccchhcccceEEE
Confidence 9999999975 4445677 7887775
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.017 Score=54.53 Aligned_cols=98 Identities=15% Similarity=0.162 Sum_probs=72.7
Q ss_pred EEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhh----CCCeeEEecCCCCHHHHHHHHHhccccCC
Q 047490 174 FIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE----NQISTVNYHGEVPAQERVENLNKFKNEDG 249 (323)
Q Consensus 174 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~g 249 (323)
....+.+..|....+-.+......+.++++.+|++..|...++.+++ .+..+..++|+++..++..+++...+ |
T Consensus 260 Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~--g 337 (630)
T TIGR00643 260 LLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIAS--G 337 (630)
T ss_pred EEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhC--C
Confidence 34444455666543322222234677999999999999988777664 36899999999999999999999998 9
Q ss_pred CCCEEEEecc-cccccCC-CCCEEEE
Q 047490 250 DCPTLVCTDL-AARGLDL-DVDHVIM 273 (323)
Q Consensus 250 ~~~ilv~t~~-~~~Gid~-~~~~vi~ 273 (323)
+.+|+|+|.. +...+.+ ++..||+
T Consensus 338 ~~~IiVgT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 338 QIHLVVGTHALIQEKVEFKRLALVII 363 (630)
T ss_pred CCCEEEecHHHHhccccccccceEEE
Confidence 9999999975 4445677 7877765
|
|
| >KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.015 Score=56.88 Aligned_cols=118 Identities=14% Similarity=0.086 Sum_probs=77.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCC---------
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNM--------- 87 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~--------- 87 (323)
.+.+||++| .++..||..++....... +++....|-.+..-.......++||++||+..+..-+.....
T Consensus 420 tgaTLII~P-~aIl~QW~~EI~kH~~~~-lKv~~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~ 497 (1394)
T KOG0298|consen 420 TGATLIICP-NAILMQWFEEIHKHISSL-LKVLLYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRH 497 (1394)
T ss_pred cCceEEECc-HHHHHHHHHHHHHhcccc-ceEEEEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhc
Confidence 367899999 677899999999988653 565555553322222222334589999999999665543210
Q ss_pred -----CC-C-----CCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHH
Q 047490 88 -----VY-G-----DIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKL 147 (323)
Q Consensus 88 -----~~-~-----~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~ 147 (323)
.+ + .|=-|++|||+.+-+ -......++..+... ...++|+||...+..+
T Consensus 498 qsr~~~~~SPL~~v~wWRIclDEaQMves--ssS~~a~M~~rL~~i---------n~W~VTGTPiq~Iddl 557 (1394)
T KOG0298|consen 498 QSRYMRPNSPLLMVNWWRICLDEAQMVES--SSSAAAEMVRRLHAI---------NRWCVTGTPIQKIDDL 557 (1394)
T ss_pred ccCCCCCCCchHHHHHHHHhhhHHHhhcc--hHHHHHHHHHHhhhh---------ceeeecCCchhhhhhh
Confidence 01 1 122479999987755 346667777777665 6889999987664443
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.031 Score=54.74 Aligned_cols=98 Identities=16% Similarity=0.150 Sum_probs=73.4
Q ss_pred EEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhh----CCCeeEEecCCCCHHHHHHHHHhccccCC
Q 047490 174 FIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE----NQISTVNYHGEVPAQERVENLNKFKNEDG 249 (323)
Q Consensus 174 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~g 249 (323)
....+.+..|....+..+......+.+++|.+|++..|...++.+++ .+..+..++|..+..++..+++.+.+ |
T Consensus 476 Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~--g 553 (926)
T TIGR00580 476 LVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELAS--G 553 (926)
T ss_pred EEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHc--C
Confidence 44444456676544433333334567999999999999998887665 36678889999999999999999998 9
Q ss_pred CCCEEEEecc-cccccCC-CCCEEEE
Q 047490 250 DCPTLVCTDL-AARGLDL-DVDHVIM 273 (323)
Q Consensus 250 ~~~ilv~t~~-~~~Gid~-~~~~vi~ 273 (323)
+.+|+|+|.. +...+.+ ++..+|+
T Consensus 554 ~~dIVIGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 554 KIDILIGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred CceEEEchHHHhhCCCCcccCCEEEe
Confidence 9999999974 4445777 8887776
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.084 Score=53.07 Aligned_cols=98 Identities=13% Similarity=0.093 Sum_probs=70.9
Q ss_pred EEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC----CCeeEEecCCCCHHHHHHHHHhccccCC
Q 047490 174 FIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN----QISTVNYHGEVPAQERVENLNKFKNEDG 249 (323)
Q Consensus 174 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~g 249 (323)
....+.+..|....+.........+.+++|.+|++..|...++.+++. +..+..++|..+..++.++++...+ |
T Consensus 625 Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~--g 702 (1147)
T PRK10689 625 LVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAE--G 702 (1147)
T ss_pred EEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHh--C
Confidence 344444566765333222222245789999999999999888877642 4677789999999999999999888 8
Q ss_pred CCCEEEEecc-cccccCC-CCCEEEE
Q 047490 250 DCPTLVCTDL-AARGLDL-DVDHVIM 273 (323)
Q Consensus 250 ~~~ilv~t~~-~~~Gid~-~~~~vi~ 273 (323)
..+|+|+|+. +...+.+ ++..+|+
T Consensus 703 ~~dIVVgTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 703 KIDILIGTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred CCCEEEECHHHHhCCCCHhhCCEEEE
Confidence 8999999974 4445667 7777765
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.055 Score=52.13 Aligned_cols=77 Identities=25% Similarity=0.443 Sum_probs=59.6
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCC-----CeeEE-ecCCCCHHHHHHHHHhccccCCCCCEEEEecc-cccccCC---
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNENQ-----ISTVN-YHGEVPAQERVENLNKFKNEDGDCPTLVCTDL-AARGLDL--- 266 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~~-----~~~~~-~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~-~~~Gid~--- 266 (323)
+++++++.+||...+...++.|+... ..+.. +|+.|++.++++.+++|.+ |..+|+|+|+. +..-.+.
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~--gdfdIlitTs~FL~k~~e~L~~ 201 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIES--GDFDILITTSQFLSKRFEELSK 201 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhc--CCccEEEEeHHHHHhhHHHhcc
Confidence 67899999999999999999887642 33333 9999999999999999999 99999999964 3333332
Q ss_pred -CCCEEEEcC
Q 047490 267 -DVDHVIMFD 275 (323)
Q Consensus 267 -~~~~vi~~~ 275 (323)
.++.|+.=|
T Consensus 202 ~kFdfifVDD 211 (1187)
T COG1110 202 LKFDFIFVDD 211 (1187)
T ss_pred cCCCEEEEcc
Confidence 355555533
|
|
| >KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.018 Score=56.25 Aligned_cols=96 Identities=26% Similarity=0.290 Sum_probs=71.1
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEEc
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMF 274 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~ 274 (323)
+...++|+|+........+...+...++..... |+ .+.....+..|.+ =. ..|+-++..+.|+|+ ++.||+..
T Consensus 1219 ~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~-~~--t~d~~dc~~~fk~--I~-clll~~~~~~~GLNL~eA~Hvfl~ 1292 (1394)
T KOG0298|consen 1219 NEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLD-GE--TEDFDDCIICFKS--ID-CLLLFVSKGSKGLNLIEATHVFLV 1292 (1394)
T ss_pred CcCceEEEEEehHHHHHHHHHHHHhhhhHhhhc-cC--Ccchhhhhhhccc--ce-EEEEEeccCcccccHHhhhhhhee
Confidence 344799999998877777766666554433222 21 2344556666764 22 357778899999999 99999999
Q ss_pred CCCCCchhhhhhhcccccCCCcc
Q 047490 275 DFPLNSIDYLHRTGRTARMGAKG 297 (323)
Q Consensus 275 ~~p~s~~~~~Q~~GR~~R~~~~g 297 (323)
++-.++..-.|.+||+.|.|+.-
T Consensus 1293 ePiLN~~~E~QAigRvhRiGQ~~ 1315 (1394)
T KOG0298|consen 1293 EPILNPGDEAQAIGRVHRIGQKR 1315 (1394)
T ss_pred ccccCchHHHhhhhhhhhccccc
Confidence 99999999999999999999744
|
|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.097 Score=51.79 Aligned_cols=38 Identities=16% Similarity=0.324 Sum_probs=29.2
Q ss_pred CCEEEeChHHHHHHHHcCCCCCCCCcEEeecchhhhhc
Q 047490 68 IDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFD 105 (323)
Q Consensus 68 ~~Iii~Tp~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~ 105 (323)
++|+|++..-|+..+....-.+...+++||||||++.+
T Consensus 432 AdivItNHalLl~dl~~~~~ilp~~~~lViDEAH~l~d 469 (928)
T PRK08074 432 ADLVITNHALLLTDLTSEEPLLPSYEHIIIDEAHHFEE 469 (928)
T ss_pred CCEEEECHHHHHHHHhhhcccCCCCCeEEEECCchHHH
Confidence 58999999988776643333456789999999999863
|
|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.07 Score=52.60 Aligned_cols=112 Identities=18% Similarity=0.179 Sum_probs=69.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccC----Ccccccc-CC----CCCEEEeChHHHHHHH-HcCC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRL----RPQEDSL-NN----PIDMVVGTPGRILQHI-EDGN 86 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~----~~~Iii~Tp~~l~~~~-~~~~ 86 (323)
.+.+++++| .+++.+|.+++.++.+.... +...+|.... ......+ .. ..+++++|++.+.... ....
T Consensus 390 ~~~~liv~p-~s~~~nw~~e~~k~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~ 467 (866)
T COG0553 390 LGPALIVVP-ASLLSNWKREFEKFAPDLRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGG 467 (866)
T ss_pred CCCeEEEec-HHHHHHHHHHHhhhCccccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHH
Confidence 468999999 55677889999888775432 5556665431 1112212 21 1689999999887732 1223
Q ss_pred CCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecc
Q 047490 87 MVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMT 141 (323)
Q Consensus 87 ~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~ 141 (323)
+.-..++++|+||+|.+-+.. ......+ ..+... ..+.+|.||-
T Consensus 468 l~~~~~~~~v~DEa~~ikn~~-s~~~~~l-~~~~~~---------~~~~LtgTPl 511 (866)
T COG0553 468 LKKIEWDRVVLDEAHRIKNDQ-SSEGKAL-QFLKAL---------NRLDLTGTPL 511 (866)
T ss_pred HhhceeeeeehhhHHHHhhhh-hHHHHHH-HHHhhc---------ceeeCCCChH
Confidence 445578999999999975532 2222222 244433 4588899983
|
|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.21 Score=49.20 Aligned_cols=91 Identities=16% Similarity=0.196 Sum_probs=71.1
Q ss_pred hhHHHHHHHHhccCCCCCCeEEEEecCcccHH----HHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEE
Q 047490 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSR----AVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256 (323)
Q Consensus 181 ~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~----~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~ 256 (323)
..|.+-.+...-.....|.++.|.+||.=.|+ .+.+.|+..+..+..++.-.+.+++..+++...+ |+++|+|+
T Consensus 626 FGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~--G~vDIvIG 703 (1139)
T COG1197 626 FGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAE--GKVDIVIG 703 (1139)
T ss_pred CcHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhc--CCccEEEe
Confidence 34555444333333356789999999976555 5566666678888889998999999999999999 99999999
Q ss_pred e-cccccccCC-CCCEEEE
Q 047490 257 T-DLAARGLDL-DVDHVIM 273 (323)
Q Consensus 257 t-~~~~~Gid~-~~~~vi~ 273 (323)
| ..+..++.+ ++-.+|+
T Consensus 704 THrLL~kdv~FkdLGLlII 722 (1139)
T COG1197 704 THRLLSKDVKFKDLGLLII 722 (1139)
T ss_pred chHhhCCCcEEecCCeEEE
Confidence 9 568888999 9998886
|
|
| >KOG0383 consensus Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.011 Score=55.01 Aligned_cols=80 Identities=21% Similarity=0.385 Sum_probs=66.1
Q ss_pred HHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCC-CCCEEEEecccc
Q 047490 183 KLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG-DCPTLVCTDLAA 261 (323)
Q Consensus 183 k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g-~~~ilv~t~~~~ 261 (323)
|...|..++....+.+.++++|.+-....+.+...+...+ ....+.|..+..+|+..+..|+.+++ ....+.+|.+.+
T Consensus 616 k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g 694 (696)
T KOG0383|consen 616 KLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGG 694 (696)
T ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeeccccc
Confidence 6666777777777789999999999999999988888777 77788999999999999999997433 455788888877
Q ss_pred cc
Q 047490 262 RG 263 (323)
Q Consensus 262 ~G 263 (323)
.|
T Consensus 695 ~g 696 (696)
T KOG0383|consen 695 LG 696 (696)
T ss_pred CC
Confidence 65
|
|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.022 Score=54.93 Aligned_cols=86 Identities=15% Similarity=0.212 Sum_probs=64.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHH-HHHHHcCC------CCC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI-LQHIEDGN------MVY 89 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l-~~~~~~~~------~~~ 89 (323)
|.-|=|++...-||.-=++++......+|++++++..+.....+.. .-.+||.++|...| +++++.+. ...
T Consensus 179 G~gVHvVTvNDYLA~RDaewm~p~y~flGLtVg~i~~~~~~~~Rr~--aY~~DItYgTn~EfGFDYLRDnma~~~~~~vq 256 (1025)
T PRK12900 179 GRGVHVVTVNDYLAQRDKEWMNPVFEFHGLSVGVILNTMRPEERRE--QYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQ 256 (1025)
T ss_pred CCCcEEEeechHhhhhhHHHHHHHHHHhCCeeeeeCCCCCHHHHHH--hCCCcceecCCCccccccchhccccchhhhhc
Confidence 4567777888899988888888888889999999976644444333 33479999999888 55555442 335
Q ss_pred CCCcEEeecchhhhh
Q 047490 90 GDIKYLVLDEADTMF 104 (323)
Q Consensus 90 ~~~~~vIiDE~h~~~ 104 (323)
+.+.+.|+||+|.++
T Consensus 257 R~~~faIVDEvDSvL 271 (1025)
T PRK12900 257 RDFYFAIVDEVDSVL 271 (1025)
T ss_pred cCCceEEEechhhhh
Confidence 678999999999865
|
|
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.17 Score=44.27 Aligned_cols=70 Identities=10% Similarity=0.175 Sum_probs=47.0
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCc
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIK 93 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~ 93 (323)
...+..++++++..+|...+.+.+..... .......+..|..+.............++
T Consensus 28 ~~~~~~~~~l~~n~~l~~~l~~~l~~~~~----------------------~~~~~~~~~~~~~~i~~~~~~~~~~~~~D 85 (352)
T PF09848_consen 28 SEEGKKVLYLCGNHPLRNKLREQLAKKYN----------------------PKLKKSDFRKPTSFINNYSESDKEKNKYD 85 (352)
T ss_pred cccCCceEEEEecchHHHHHHHHHhhhcc----------------------cchhhhhhhhhHHHHhhcccccccCCcCC
Confidence 44577899999999998888777765430 00012345555555544332334567899
Q ss_pred EEeecchhhhhc
Q 047490 94 YLVLDEADTMFD 105 (323)
Q Consensus 94 ~vIiDE~h~~~~ 105 (323)
+|||||||++..
T Consensus 86 viivDEAqrl~~ 97 (352)
T PF09848_consen 86 VIIVDEAQRLRT 97 (352)
T ss_pred EEEEehhHhhhh
Confidence 999999999987
|
It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation []. |
| >KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.021 Score=57.89 Aligned_cols=92 Identities=21% Similarity=0.344 Sum_probs=73.3
Q ss_pred EEEEecCcccHHHHHHHHhhCC-CeeEEecCCCCH-----------HHHHHHHHhccccCCCCCEEEEecccccccCC-C
Q 047490 201 VMVFCNTLNSSRAVDHFLNENQ-ISTVNYHGEVPA-----------QERVENLNKFKNEDGDCPTLVCTDLAARGLDL-D 267 (323)
Q Consensus 201 ~lvf~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~-----------~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~ 267 (323)
.++|++.+..+....+.+++.. ..+..+.|.+.+ ..+.+++..|.. ..+++|++|.++.+|+|+ .
T Consensus 295 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~--~~ln~L~~~~~~~e~~d~~~ 372 (1606)
T KOG0701|consen 295 GIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHF--HELNLLIATSVLEEGVDVPK 372 (1606)
T ss_pred heeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhh--hhhhHHHHHHHHHhhcchhh
Confidence 3799999999988888877641 122224443332 135688999998 889999999999999999 9
Q ss_pred CCEEEEcCCCCCchhhhhhhcccccCC
Q 047490 268 VDHVIMFDFPLNSIDYLHRTGRTARMG 294 (323)
Q Consensus 268 ~~~vi~~~~p~s~~~~~Q~~GR~~R~~ 294 (323)
++.|+.++.|...+.|.|..||+.+..
T Consensus 373 ~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 373 CNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhhheeccCcchHHHHHHhhcccccch
Confidence 999999999999999999999996643
|
|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=93.83 E-value=0.26 Score=45.71 Aligned_cols=86 Identities=20% Similarity=0.314 Sum_probs=68.0
Q ss_pred HHHHHHhccCCCCCCeEEEEecCcccHH----HHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc-
Q 047490 185 EALLQVLEPSLSKGNKVMVFCNTLNSSR----AVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL- 259 (323)
Q Consensus 185 ~~l~~~l~~~~~~~~~~lvf~~~~~~~~----~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~- 259 (323)
-+++.++.. .+.|.++.+.+||.-.|+ .+.++|...++.+..+.|.+....|+++++...+ |..+++|+|.+
T Consensus 299 VA~laml~a-i~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~--G~~~ivVGTHAL 375 (677)
T COG1200 299 VALLAMLAA-IEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLAS--GEIDIVVGTHAL 375 (677)
T ss_pred HHHHHHHHH-HHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhC--CCCCEEEEcchh
Confidence 344444433 356789999999966555 5556666679999999999999999999999999 99999999976
Q ss_pred cccccCC-CCCEEEE
Q 047490 260 AARGLDL-DVDHVIM 273 (323)
Q Consensus 260 ~~~Gid~-~~~~vi~ 273 (323)
+...+++ ++-.||.
T Consensus 376 iQd~V~F~~LgLVIi 390 (677)
T COG1200 376 IQDKVEFHNLGLVII 390 (677)
T ss_pred hhcceeecceeEEEE
Confidence 5557888 8888776
|
|
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.15 Score=46.14 Aligned_cols=84 Identities=11% Similarity=0.228 Sum_probs=62.6
Q ss_pred hhhhhhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHH
Q 047490 4 HDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRIL 79 (323)
Q Consensus 4 ~~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~ 79 (323)
...+++.......+.++||-|-|+.-+.++.+.++.. +..+..++|+....++...+ .+.+.|+|+|-
T Consensus 328 ~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~----~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATd---- 399 (519)
T KOG0331|consen 328 KLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRK----GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATD---- 399 (519)
T ss_pred HHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhc----CcceeeecccccHHHHHHHHHhcccCCcceEEEcc----
Confidence 3455566666667789999999999999999988875 35788999998766655444 35688999992
Q ss_pred HHHHcCCCCCCCCcEEee
Q 047490 80 QHIEDGNMVYGDIKYLVL 97 (323)
Q Consensus 80 ~~~~~~~~~~~~~~~vIi 97 (323)
+-...+.+.++++||=
T Consensus 400 --VAaRGLDi~dV~lVIn 415 (519)
T KOG0331|consen 400 --VAARGLDVPDVDLVIN 415 (519)
T ss_pred --cccccCCCccccEEEe
Confidence 2334677888888874
|
|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.52 Score=42.50 Aligned_cols=120 Identities=18% Similarity=0.328 Sum_probs=86.1
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCCCC
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMVYG 90 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~~~ 90 (323)
.++-++||.+-|+-.+.++.+.+.+. |+++..++++.+.-++...+ .+.++++|+- ++++ ..+.+.
T Consensus 444 ~~~eRvLVTtLTKkmAEdLT~Yl~e~----gikv~YlHSdidTlER~eIirdLR~G~~DvLVGI-----NLLR-EGLDiP 513 (663)
T COG0556 444 AKNERVLVTTLTKKMAEDLTEYLKEL----GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGI-----NLLR-EGLDLP 513 (663)
T ss_pred hcCCeEEEEeehHHHHHHHHHHHHhc----CceEEeeeccchHHHHHHHHHHHhcCCccEEEee-----hhhh-ccCCCc
Confidence 34689999999999887766666654 88999999998876665544 4568999998 5555 467888
Q ss_pred CCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHH
Q 047490 91 DIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDE 150 (323)
Q Consensus 91 ~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~ 150 (323)
.+.+|-+=+||. .||...-..++.-+.....+..+ ++|+-.-..++++.+.++.
T Consensus 514 EVsLVAIlDADK---eGFLRse~SLIQtIGRAARN~~G---kvIlYAD~iT~sM~~Ai~E 567 (663)
T COG0556 514 EVSLVAILDADK---EGFLRSERSLIQTIGRAARNVNG---KVILYADKITDSMQKAIDE 567 (663)
T ss_pred ceeEEEEeecCc---cccccccchHHHHHHHHhhccCC---eEEEEchhhhHHHHHHHHH
Confidence 999998888884 45665555555544444444444 7888777777777665543
|
|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.38 Score=50.23 Aligned_cols=61 Identities=26% Similarity=0.355 Sum_probs=52.9
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhC------CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNEN------QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL 259 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~------~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~ 259 (323)
++.+++|.+|++..+..+.+.|+.. +..+..+||+++..++.++++.+.+ |..+|+|+|+-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~--g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIEN--GDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhc--CCCCEEEECCc
Confidence 4668999999999999998888763 4567889999999999999999988 88899999974
|
|
| >PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.25 Score=48.20 Aligned_cols=71 Identities=17% Similarity=0.194 Sum_probs=53.6
Q ss_pred CCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCC--Ccc--------eEEEEeeCCcHHHHHHHHHHH
Q 047490 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMG--AKG--------KVTSLVAKKDVLLADRIEEAI 318 (323)
Q Consensus 250 ~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~--~~g--------~~~~~~~~~~~~~~~~i~~~l 318 (323)
.++.+++.+++.+|.|- ++-.++.+....|...-.|.+||+-|.. +.| .--++.+.........+++..
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 57899999999999999 8888888888888888899999999954 223 123344455666777776665
Q ss_pred Hh
Q 047490 319 RK 320 (323)
Q Consensus 319 ~~ 320 (323)
+.
T Consensus 581 ~~ 582 (986)
T PRK15483 581 NS 582 (986)
T ss_pred Hh
Confidence 44
|
|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.26 Score=49.91 Aligned_cols=61 Identities=23% Similarity=0.391 Sum_probs=50.4
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhC----CCe---eEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNEN----QIS---TVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL 259 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~---~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~ 259 (323)
.+.+++|.+|++..|..+++.++.. +.. +..+||+++..++.+.++.+.+ |..+|+|+|+.
T Consensus 120 ~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~--~~~dIlV~Tp~ 187 (1171)
T TIGR01054 120 KGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIEN--GDFDILITTTM 187 (1171)
T ss_pred cCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhc--CCCCEEEECHH
Confidence 4679999999999999998887754 322 3358999999999999999988 88899999973
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.044 Score=42.50 Aligned_cols=40 Identities=15% Similarity=0.202 Sum_probs=26.0
Q ss_pred CCCCEEEeChHHHHHHHHcCCC--CCCCCcEEeecchhhhhc
Q 047490 66 NPIDMVVGTPGRILQHIEDGNM--VYGDIKYLVLDEADTMFD 105 (323)
Q Consensus 66 ~~~~Iii~Tp~~l~~~~~~~~~--~~~~~~~vIiDE~h~~~~ 105 (323)
..++|+|+++.-++.-...... ...+-.+|||||||.+.+
T Consensus 118 ~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 118 KNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp GG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred ccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 4479999999988654333221 123446899999998754
|
RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A. |
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=93.05 E-value=0.054 Score=52.59 Aligned_cols=86 Identities=13% Similarity=0.163 Sum_probs=62.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCc-cCCccccccCCCCCEEEeChHHH-HHHHHcCC------CC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGG-RLRPQEDSLNNPIDMVVGTPGRI-LQHIEDGN------MV 88 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~Iii~Tp~~l-~~~~~~~~------~~ 88 (323)
|.-|-|++...-||.-=++++......+|+++++..... .... +...-.++|.++|...| +++++.+. ..
T Consensus 210 GkgVHvVTVNDYLA~RDaewmgply~fLGLsvg~i~~~~~~~~~--rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~v 287 (1112)
T PRK12901 210 GNGVHVVTVNDYLAKRDSEWMGPLYEFHGLSVDCIDKHQPNSEA--RRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLV 287 (1112)
T ss_pred CCCcEEEEechhhhhccHHHHHHHHHHhCCceeecCCCCCCHHH--HHHhCCCcceecCCCccccccchhccccchHhhh
Confidence 456777788899998888888888888899999886532 2222 22233479999999888 55555432 23
Q ss_pred CCCCcEEeecchhhhh
Q 047490 89 YGDIKYLVLDEADTMF 104 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~ 104 (323)
.+.+.+.|+||+|.++
T Consensus 288 qR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 288 QRKHNYAIVDEVDSVL 303 (1112)
T ss_pred CcCCceeEeechhhhh
Confidence 5668999999999865
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.3 Score=45.65 Aligned_cols=83 Identities=22% Similarity=0.383 Sum_probs=60.5
Q ss_pred hhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHH
Q 047490 8 MLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIE 83 (323)
Q Consensus 8 ~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~ 83 (323)
++..+....+.++||.|+|+..+.++++.|... ++.+..++|+....++...+ .+..+|+|+| +.+.
T Consensus 248 L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaT-----dv~a 318 (572)
T PRK04537 248 LLGLLSRSEGARTMVFVNTKAFVERVARTLERH----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT-----DVAA 318 (572)
T ss_pred HHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHc----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-----hhhh
Confidence 344445566789999999999999999988765 56889999987655444332 3457899999 3333
Q ss_pred cCCCCCCCCcEEeecch
Q 047490 84 DGNMVYGDIKYLVLDEA 100 (323)
Q Consensus 84 ~~~~~~~~~~~vIiDE~ 100 (323)
..+.+.++++||.-+.
T Consensus 319 -rGIDip~V~~VInyd~ 334 (572)
T PRK04537 319 -RGLHIDGVKYVYNYDL 334 (572)
T ss_pred -cCCCccCCCEEEEcCC
Confidence 4567888998886554
|
|
| >KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.44 Score=44.23 Aligned_cols=106 Identities=16% Similarity=0.187 Sum_probs=68.9
Q ss_pred CCeEEEEecCcccHHHHHHHHhhCCCee------EEecCCCCHHHHHHHHHhcccc--CCCCCEEEEe--cccccccCC-
Q 047490 198 GNKVMVFCNTLNSSRAVDHFLNENQIST------VNYHGEVPAQERVENLNKFKNE--DGDCPTLVCT--DLAARGLDL- 266 (323)
Q Consensus 198 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~------~~~~~~~~~~~r~~~~~~f~~~--~g~~~ilv~t--~~~~~Gid~- 266 (323)
++-+++|+++.+-...+.+..++.|+-. .++..... .-+.+++.|... .|.=.+|++. ..+.+|||+
T Consensus 629 PgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~--~~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF~ 706 (821)
T KOG1133|consen 629 PGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKD--TVEDVLEGYAEAAERGRGAILLAVVGGKLSEGINFS 706 (821)
T ss_pred CCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCcc--cHHHHHHHHHHHhhcCCCeEEEEEeccccccccccc
Confidence 3678999999888888877776544311 11121111 145667777651 2332467665 678999999
Q ss_pred C--CCEEEEcCCCCC--------------------------------chhhhhhhcccccCCCcceEEEEeeC
Q 047490 267 D--VDHVIMFDFPLN--------------------------------SIDYLHRTGRTARMGAKGKVTSLVAK 305 (323)
Q Consensus 267 ~--~~~vi~~~~p~s--------------------------------~~~~~Q~~GR~~R~~~~g~~~~~~~~ 305 (323)
+ +.+|+..|+|.. ....-|.+|||-|.-+.-.++++.+.
T Consensus 707 D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD~ 779 (821)
T KOG1133|consen 707 DDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLDK 779 (821)
T ss_pred cccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEehh
Confidence 6 889999998841 01124999999998766666666664
|
|
| >PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases | Back alignment and domain information |
|---|
Probab=92.37 E-value=0.65 Score=38.01 Aligned_cols=87 Identities=11% Similarity=0.053 Sum_probs=61.1
Q ss_pred CCeeEEecCCCCHHHHHHHHHhccccC--CCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccc-cCCCcc
Q 047490 222 QISTVNYHGEVPAQERVENLNKFKNED--GDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTA-RMGAKG 297 (323)
Q Consensus 222 ~~~~~~~~~~~~~~~r~~~~~~f~~~~--g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~-R~~~~g 297 (323)
++.+..++++.+... -+|...+ +...|+|+=..+++|+.+ ++...++.-.+...+++.|+.=.-| |.|-.+
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 467777776544322 3344311 236688999999999999 9999999999999999988875555 666677
Q ss_pred eEEEEeeCCcHHHHHH
Q 047490 298 KVTSLVAKKDVLLADR 313 (323)
Q Consensus 298 ~~~~~~~~~~~~~~~~ 313 (323)
.|-++.++.-......
T Consensus 185 l~Ri~~~~~l~~~f~~ 200 (239)
T PF10593_consen 185 LCRIYMPEELYDWFRH 200 (239)
T ss_pred ceEEecCHHHHHHHHH
Confidence 8888888654443333
|
This domain is found associated with a helicase domain of superfamily type II []. |
| >KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.86 E-value=0.72 Score=41.35 Aligned_cols=69 Identities=13% Similarity=0.177 Sum_probs=51.3
Q ss_pred CeEEEEecCcccHHHHHHHHhhC----CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEec-------ccccccCC-
Q 047490 199 NKVMVFCNTLNSSRAVDHFLNEN----QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD-------LAARGLDL- 266 (323)
Q Consensus 199 ~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~-------~~~~Gid~- 266 (323)
.++||.||++..+-.+....++. .+.++..-|+++-..++.++..- .+|+|||+ --..++|+
T Consensus 253 TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~------PDIVIATPGRlIDHlrNs~sf~ld 326 (691)
T KOG0338|consen 253 TRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSR------PDIVIATPGRLIDHLRNSPSFNLD 326 (691)
T ss_pred eeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhC------CCEEEecchhHHHHhccCCCcccc
Confidence 58999999999887776655442 67888899999988888776543 35999997 23456667
Q ss_pred CCCEEEE
Q 047490 267 DVDHVIM 273 (323)
Q Consensus 267 ~~~~vi~ 273 (323)
++..+|.
T Consensus 327 siEVLvl 333 (691)
T KOG0338|consen 327 SIEVLVL 333 (691)
T ss_pred ceeEEEe
Confidence 6665555
|
|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=91.43 E-value=2.2 Score=40.59 Aligned_cols=78 Identities=14% Similarity=0.226 Sum_probs=56.2
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccc----cCCCCCEEEeChHHHHHHHHcCCCCCC
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS----LNNPIDMVVGTPGRILQHIEDGNMVYG 90 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Iii~Tp~~l~~~~~~~~~~~~ 90 (323)
.++.++||.++|+..+..+.+.+... ++.+..++++.....+... -.+..+|+||| ..+. ..+.+.
T Consensus 440 ~~g~~vLIf~~tk~~ae~L~~~L~~~----gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t-----~~L~-rGfDiP 509 (655)
T TIGR00631 440 ARNERVLVTTLTKKMAEDLTDYLKEL----GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI-----NLLR-EGLDLP 509 (655)
T ss_pred cCCCEEEEEECCHHHHHHHHHHHhhh----ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEc-----Chhc-CCeeeC
Confidence 44778999999999999988888775 5677788887554332221 23457899999 3333 467788
Q ss_pred CCcEEeecchhh
Q 047490 91 DIKYLVLDEADT 102 (323)
Q Consensus 91 ~~~~vIiDE~h~ 102 (323)
++++||+-|++.
T Consensus 510 ~v~lVvi~Dadi 521 (655)
T TIGR00631 510 EVSLVAILDADK 521 (655)
T ss_pred CCcEEEEeCccc
Confidence 999998877765
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=91.30 E-value=0.56 Score=37.90 Aligned_cols=117 Identities=13% Similarity=0.175 Sum_probs=67.3
Q ss_pred EEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcc---------ccccCCCCCEEEeChHHHHHHHHc----CC-
Q 047490 21 VVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ---------EDSLNNPIDMVVGTPGRILQHIED----GN- 86 (323)
Q Consensus 21 lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~Iii~Tp~~l~~~~~~----~~- 86 (323)
.|..+..+++....+.+..-. ........++|+...... ......+..|++.+.+.|...+.. ..
T Consensus 10 fv~g~~N~~a~~~~~~ia~~~-~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~ 88 (219)
T PF00308_consen 10 FVVGESNELAYAAAKAIAENP-GERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEI 88 (219)
T ss_dssp S--TTTTHHHHHHHHHHHHST-TTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSH
T ss_pred CCcCCcHHHHHHHHHHHHhcC-CCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccc
Confidence 455677788877777776652 223456788888765532 111234568999999888654322 11
Q ss_pred ----CCCCCCcEEeecchhhhhcCC-ChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhH
Q 047490 87 ----MVYGDIKYLVLDEADTMFDRG-FGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQ 145 (323)
Q Consensus 87 ----~~~~~~~~vIiDE~h~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~ 145 (323)
..+...+++++|++|.+.... ....+..++..+.... -++|+.|..+|..+.
T Consensus 89 ~~~~~~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~-------k~li~ts~~~P~~l~ 145 (219)
T PF00308_consen 89 EEFKDRLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESG-------KQLILTSDRPPSELS 145 (219)
T ss_dssp HHHHHHHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTT-------SEEEEEESS-TTTTT
T ss_pred hhhhhhhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhC-------CeEEEEeCCCCcccc
Confidence 136789999999999886431 2233444444443321 166666666665543
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >smart00488 DEXDc2 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=90.87 E-value=0.2 Score=42.31 Aligned_cols=38 Identities=16% Similarity=0.115 Sum_probs=26.6
Q ss_pred CCCEEEeChHHHHHHHHcC--CCCCCCCcEEeecchhhhhc
Q 047490 67 PIDMVVGTPGRILQHIEDG--NMVYGDIKYLVLDEADTMFD 105 (323)
Q Consensus 67 ~~~Iii~Tp~~l~~~~~~~--~~~~~~~~~vIiDE~h~~~~ 105 (323)
.++|+|+++.-++.-..+. ...+ .-.++||||||.+.+
T Consensus 211 ~Adivi~ny~yll~~~~r~~~~~~l-~~~~lIiDEAHnL~d 250 (289)
T smart00488 211 FANVVVLPYQYLLDPKIRQALSIEL-KDSIVIFDEAHNLDN 250 (289)
T ss_pred cCCEEEECHHHHhcHHHHHHhcccc-cccEEEEeCccChHH
Confidence 3689999999886554322 2233 467999999998653
|
|
| >smart00489 DEXDc3 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=90.87 E-value=0.2 Score=42.31 Aligned_cols=38 Identities=16% Similarity=0.115 Sum_probs=26.6
Q ss_pred CCCEEEeChHHHHHHHHcC--CCCCCCCcEEeecchhhhhc
Q 047490 67 PIDMVVGTPGRILQHIEDG--NMVYGDIKYLVLDEADTMFD 105 (323)
Q Consensus 67 ~~~Iii~Tp~~l~~~~~~~--~~~~~~~~~vIiDE~h~~~~ 105 (323)
.++|+|+++.-++.-..+. ...+ .-.++||||||.+.+
T Consensus 211 ~Adivi~ny~yll~~~~r~~~~~~l-~~~~lIiDEAHnL~d 250 (289)
T smart00489 211 FANVVVLPYQYLLDPKIRQALSIEL-KDSIVIFDEAHNLDN 250 (289)
T ss_pred cCCEEEECHHHHhcHHHHHHhcccc-cccEEEEeCccChHH
Confidence 3689999999886554322 2233 467999999998653
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=90.82 E-value=0.67 Score=41.63 Aligned_cols=78 Identities=13% Similarity=0.201 Sum_probs=56.2
Q ss_pred ccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCC
Q 047490 12 LMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNM 87 (323)
Q Consensus 12 ~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~ 87 (323)
+......++||.|+++..+..+.+.+.+. +.++..++|+....++...+ .+..+|+|+| +.+. ..+
T Consensus 250 l~~~~~~~~lVF~~t~~~~~~l~~~L~~~----g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaT-----dv~~-rGi 319 (423)
T PRK04837 250 IEEEWPDRAIIFANTKHRCEEIWGHLAAD----GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVAT-----DVAA-RGL 319 (423)
T ss_pred HHhcCCCeEEEEECCHHHHHHHHHHHHhC----CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEe-----chhh-cCC
Confidence 33444678999999999999988888764 56888999987665554333 4567999999 3333 456
Q ss_pred CCCCCcEEeecc
Q 047490 88 VYGDIKYLVLDE 99 (323)
Q Consensus 88 ~~~~~~~vIiDE 99 (323)
.+.++++||--+
T Consensus 320 Dip~v~~VI~~d 331 (423)
T PRK04837 320 HIPAVTHVFNYD 331 (423)
T ss_pred CccccCEEEEeC
Confidence 778888877543
|
|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=90.44 E-value=0.63 Score=43.94 Aligned_cols=82 Identities=13% Similarity=0.218 Sum_probs=59.5
Q ss_pred hhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHH
Q 047490 8 MLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIE 83 (323)
Q Consensus 8 ~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~ 83 (323)
++..+...++..+||.|+|+.-+.++++.+++. ++.+..++++.....+...+ .+..+|+|+|. .+
T Consensus 227 l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~----g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~-----a~- 296 (607)
T PRK11057 227 LMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSR----GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATV-----AF- 296 (607)
T ss_pred HHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhC----CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEec-----hh-
Confidence 444445556778999999999999999988775 56888899887655443322 45678999993 33
Q ss_pred cCCCCCCCCcEEeecc
Q 047490 84 DGNMVYGDIKYLVLDE 99 (323)
Q Consensus 84 ~~~~~~~~~~~vIiDE 99 (323)
...+.+.++++||--.
T Consensus 297 ~~GIDip~V~~VI~~d 312 (607)
T PRK11057 297 GMGINKPNVRFVVHFD 312 (607)
T ss_pred hccCCCCCcCEEEEeC
Confidence 3467788999988533
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=90.30 E-value=0.66 Score=42.19 Aligned_cols=82 Identities=17% Similarity=0.261 Sum_probs=58.1
Q ss_pred hccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHc
Q 047490 9 LGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIED 84 (323)
Q Consensus 9 ~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~ 84 (323)
...+.......+||.|+++.-+..+++.+++. +..+..++|+....++...+ .+..+|+|+| +.+ .
T Consensus 234 ~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~----~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaT-----dv~-~ 303 (460)
T PRK11776 234 QRLLLHHQPESCVVFCNTKKECQEVADALNAQ----GFSALALHGDLEQRDRDQVLVRFANRSCSVLVAT-----DVA-A 303 (460)
T ss_pred HHHHHhcCCCceEEEECCHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEe-----ccc-c
Confidence 33344445568999999999999999988775 56888999987765544332 3457899999 322 3
Q ss_pred CCCCCCCCcEEeecch
Q 047490 85 GNMVYGDIKYLVLDEA 100 (323)
Q Consensus 85 ~~~~~~~~~~vIiDE~ 100 (323)
..+.+.++++||.-+.
T Consensus 304 rGiDi~~v~~VI~~d~ 319 (460)
T PRK11776 304 RGLDIKALEAVINYEL 319 (460)
T ss_pred cccchhcCCeEEEecC
Confidence 4567888888886444
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=90.26 E-value=0.89 Score=41.33 Aligned_cols=75 Identities=15% Similarity=0.165 Sum_probs=54.4
Q ss_pred cCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCC
Q 047490 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMV 88 (323)
Q Consensus 13 ~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~ 88 (323)
......++||.|+++.-+..+++.+... ++.+..++|+....++...+ .+..+|+|+| +.+. ..+.
T Consensus 241 ~~~~~~~~lVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT-----dv~~-rGiD 310 (456)
T PRK10590 241 GKGNWQQVLVFTRTKHGANHLAEQLNKD----GIRSAAIHGNKSQGARTRALADFKSGDIRVLVAT-----DIAA-RGLD 310 (456)
T ss_pred HcCCCCcEEEEcCcHHHHHHHHHHHHHC----CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEc-----cHHh-cCCC
Confidence 3445678999999999999988888764 56888899887655443332 3457899999 3333 4577
Q ss_pred CCCCcEEee
Q 047490 89 YGDIKYLVL 97 (323)
Q Consensus 89 ~~~~~~vIi 97 (323)
+.++++||.
T Consensus 311 ip~v~~VI~ 319 (456)
T PRK10590 311 IEELPHVVN 319 (456)
T ss_pred cccCCEEEE
Confidence 888888874
|
|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=89.90 E-value=1.5 Score=35.86 Aligned_cols=88 Identities=10% Similarity=0.109 Sum_probs=48.6
Q ss_pred eEEEeecCccCCcc--ccc-----cCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEeecchhhhhcCC-ChhhHHHHHhh
Q 047490 47 RSTMVSGGGRLRPQ--EDS-----LNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRG-FGPDIRKFLVP 118 (323)
Q Consensus 47 ~~~~~~~~~~~~~~--~~~-----~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~-~~~~~~~i~~~ 118 (323)
....++|....... ... ...+..+++.+.+.+..........+.+.+++|+||+|.+.... +...+-.++..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~ 125 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRGPELLDNLEQYELVCLDDLDVIAGKADWEEALFHLFNR 125 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhhHHHHHhhhhCCEEEEechhhhcCChHHHHHHHHHHHH
Confidence 45677776654432 111 12346788888887765332212235577899999999775432 22334455544
Q ss_pred hccccCCCCCCCceEEEEEeecch
Q 047490 119 LKNRASKPNGQGFQTVLVSATMTK 142 (323)
Q Consensus 119 ~~~~~~~~~~~~~~~i~~sat~~~ 142 (323)
+.... +.+++|++.++
T Consensus 126 ~~~~g--------~~ilits~~~p 141 (234)
T PRK05642 126 LRDSG--------RRLLLAASKSP 141 (234)
T ss_pred HHhcC--------CEEEEeCCCCH
Confidence 43321 34566666443
|
|
| >PHA03368 DNA packaging terminase subunit 1; Provisional | Back alignment and domain information |
|---|
Probab=89.86 E-value=2.8 Score=39.39 Aligned_cols=109 Identities=19% Similarity=0.177 Sum_probs=65.8
Q ss_pred ccCCCCccEEEEcCCHHHHHHHHHHHHHhcccc--ceeEEEeecCccCCccccccCCC--CCEEEeChHHHHHHHHcCCC
Q 047490 12 LMKPRRPRAVVLCPTRELSEQVFRVAKSISHHA--RFRSTMVSGGGRLRPQEDSLNNP--IDMVVGTPGRILQHIEDGNM 87 (323)
Q Consensus 12 ~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~Iii~Tp~~l~~~~~~~~~ 87 (323)
+..-++-++++.+|.+..++.+.+++....... +..+....|. ...-...++ ..|.++|. ...+..
T Consensus 279 l~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe----~I~i~f~nG~kstI~FaSa------rntNsi 348 (738)
T PHA03368 279 LATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGE----TISFSFPDGSRSTIVFASS------HNTNGI 348 (738)
T ss_pred HHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCc----EEEEEecCCCccEEEEEec------cCCCCc
Confidence 344468999999999999999988888865532 1112222221 111122222 35666641 122334
Q ss_pred CCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecc
Q 047490 88 VYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMT 141 (323)
Q Consensus 88 ~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~ 141 (323)
.-.+++++|+|||+-+-. +.+..++..+... +.+.|++|.|-.
T Consensus 349 RGqtfDLLIVDEAqFIk~----~al~~ilp~l~~~-------n~k~I~ISS~Ns 391 (738)
T PHA03368 349 RGQDFNLLFVDEANFIRP----DAVQTIMGFLNQT-------NCKIIFVSSTNT 391 (738)
T ss_pred cCCcccEEEEechhhCCH----HHHHHHHHHHhcc-------CccEEEEecCCC
Confidence 455899999999997633 5556666554433 338899988854
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=89.52 E-value=1 Score=41.55 Aligned_cols=81 Identities=16% Similarity=0.275 Sum_probs=58.6
Q ss_pred hhhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHH
Q 047490 7 AMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHI 82 (323)
Q Consensus 7 ~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~ 82 (323)
.+...+......++||.|.|+..+..+...++.. ++++..++|+.....+.+.+ .+..+|+|+| +..
T Consensus 263 ~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~----g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaT-----Dva 333 (513)
T COG0513 263 LLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKR----GFKVAALHGDLPQEERDRALEKFKDGELRVLVAT-----DVA 333 (513)
T ss_pred HHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHC----CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEe-----chh
Confidence 3344444455557999999999999988877776 57899999998766655443 4568999999 333
Q ss_pred HcCCCCCCCCcEEee
Q 047490 83 EDGNMVYGDIKYLVL 97 (323)
Q Consensus 83 ~~~~~~~~~~~~vIi 97 (323)
...+...++++||=
T Consensus 334 -aRGiDi~~v~~Vin 347 (513)
T COG0513 334 -ARGLDIPDVSHVIN 347 (513)
T ss_pred -hccCCccccceeEE
Confidence 34567778877753
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=89.33 E-value=1.1 Score=40.35 Aligned_cols=75 Identities=13% Similarity=0.245 Sum_probs=55.2
Q ss_pred cCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCC
Q 047490 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMV 88 (323)
Q Consensus 13 ~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~ 88 (323)
......++||.|++++-+..+++.++.. ++.+..++|+....++...+ .+..+|+|+| +.+ ...+.
T Consensus 241 ~~~~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaT-----d~~-~~GiD 310 (434)
T PRK11192 241 KQPEVTRSIVFVRTRERVHELAGWLRKA----GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVAT-----DVA-ARGID 310 (434)
T ss_pred hcCCCCeEEEEeCChHHHHHHHHHHHhC----CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEc-----ccc-ccCcc
Confidence 3445679999999999999999888764 56888888887665554332 3457899999 333 34567
Q ss_pred CCCCcEEee
Q 047490 89 YGDIKYLVL 97 (323)
Q Consensus 89 ~~~~~~vIi 97 (323)
+.++++||.
T Consensus 311 ip~v~~VI~ 319 (434)
T PRK11192 311 IDDVSHVIN 319 (434)
T ss_pred CCCCCEEEE
Confidence 888888874
|
|
| >KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.30 E-value=0.89 Score=40.94 Aligned_cols=81 Identities=14% Similarity=0.346 Sum_probs=59.3
Q ss_pred hhhhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHH
Q 047490 6 EAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQH 81 (323)
Q Consensus 6 ~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~ 81 (323)
.++...+.+...|.+||.+.++.-+.-+++.|.+. ++++..++|+...++....+ .+..+|+|+|-
T Consensus 506 kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~----g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTD------ 575 (673)
T KOG0333|consen 506 KKLIEILESNFDPPIIIFVNTKKGADALAKILEKA----GYKVTTLHGGKSQEQRENALADFREGTGDILVATD------ 575 (673)
T ss_pred HHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhc----cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEec------
Confidence 34455566667899999999999999888888876 56899999997766554433 23579999993
Q ss_pred HHcCCCCCCCCcEEe
Q 047490 82 IEDGNMVYGDIKYLV 96 (323)
Q Consensus 82 ~~~~~~~~~~~~~vI 96 (323)
.--..+...++.+||
T Consensus 576 vAgRGIDIpnVSlVi 590 (673)
T KOG0333|consen 576 VAGRGIDIPNVSLVI 590 (673)
T ss_pred ccccCCCCCccceee
Confidence 223356778887775
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=89.22 E-value=1.1 Score=42.49 Aligned_cols=81 Identities=16% Similarity=0.235 Sum_probs=57.7
Q ss_pred hhhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHH
Q 047490 7 AMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHI 82 (323)
Q Consensus 7 ~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~ 82 (323)
++...+.......+||.|+|+.-+.++++.|.+. ++.+..++|+.....+...+ .+..+|+|+| +.+
T Consensus 235 ~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~----g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVAT-----dv~ 305 (629)
T PRK11634 235 ALVRFLEAEDFDAAIIFVRTKNATLEVAEALERN----GYNSAALNGDMNQALREQTLERLKDGRLDILIAT-----DVA 305 (629)
T ss_pred HHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhC----CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEc-----chH
Confidence 3444444455578999999999999999888765 56788889887655443322 3567999999 333
Q ss_pred HcCCCCCCCCcEEee
Q 047490 83 EDGNMVYGDIKYLVL 97 (323)
Q Consensus 83 ~~~~~~~~~~~~vIi 97 (323)
. ..+.+.++++||.
T Consensus 306 a-rGIDip~V~~VI~ 319 (629)
T PRK11634 306 A-RGLDVERISLVVN 319 (629)
T ss_pred h-cCCCcccCCEEEE
Confidence 3 3567888888875
|
|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=88.81 E-value=3.1 Score=35.64 Aligned_cols=117 Identities=21% Similarity=0.281 Sum_probs=81.3
Q ss_pred eEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC--CCeeEEecCCCCHHHHHHHHHhccccCCC
Q 047490 173 DFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN--QISTVNYHGEVPAQERVENLNKFKNEDGD 250 (323)
Q Consensus 173 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~g~ 250 (323)
..++...+..|.+-+.+.+...++.|+++.+-.+..+-+-+++..|+.. +..+..+||+-++ .|+
T Consensus 119 ~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~Lyg~S~~--------~fr----- 185 (441)
T COG4098 119 TLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDLLYGDSDS--------YFR----- 185 (441)
T ss_pred EEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhccCCeeeEecCCch--------hcc-----
Confidence 4455566788999999988888889999999999999999999999864 5788889998652 233
Q ss_pred CCEEEEecccccccCC--CCCEEEEc---CCCCCchhhhhhhcccccCCCcceEEEEeeC
Q 047490 251 CPTLVCTDLAARGLDL--DVDHVIMF---DFPLNSIDYLHRTGRTARMGAKGKVTSLVAK 305 (323)
Q Consensus 251 ~~ilv~t~~~~~Gid~--~~~~vi~~---~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~ 305 (323)
-+++|||.= .-+-+ .+|.+|+- ..|.+.+...|-+-+-.|.. .|..+.+...
T Consensus 186 ~plvVaTtH--QLlrFk~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~-~g~~IylTAT 242 (441)
T COG4098 186 APLVVATTH--QLLRFKQAFDLLIIDEVDAFPFSDDQSLQYAVKKARKK-EGATIYLTAT 242 (441)
T ss_pred ccEEEEehH--HHHHHHhhccEEEEeccccccccCCHHHHHHHHHhhcc-cCceEEEecC
Confidence 357787741 11233 35555543 36888888888876666653 3444444333
|
|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=88.65 E-value=1.4 Score=40.33 Aligned_cols=60 Identities=13% Similarity=0.125 Sum_probs=53.4
Q ss_pred CCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc
Q 047490 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL 259 (323)
Q Consensus 198 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~ 259 (323)
++.+||.+|++..+......|+..+..+..++++.+..++..++..... +..+++++|+-
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~--~~~~il~~TPe 110 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKD--GKIKLLYVTPE 110 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhc--CCCCEEEECHH
Confidence 4578999999999998888899899999999999999999999888887 88899999963
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0347 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.58 E-value=0.83 Score=41.40 Aligned_cols=52 Identities=23% Similarity=0.290 Sum_probs=45.5
Q ss_pred EEEEecCcccHHHHHHHHhhC----CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEec
Q 047490 201 VMVFCNTLNSSRAVDHFLNEN----QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258 (323)
Q Consensus 201 ~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~ 258 (323)
.||++++++.|..+.++|... ++.+..+.|+|+...++.++.+ + + .|+|||+
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~-~---p--~IVVATP 321 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ-R---P--DIVVATP 321 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc-C---C--CEEEecc
Confidence 799999999999999998763 8899999999999988888887 2 3 3899997
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=88.55 E-value=1.5 Score=40.80 Aligned_cols=72 Identities=10% Similarity=0.183 Sum_probs=53.1
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMVYGD 91 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~~~~ 91 (323)
.+.++||.|+++.-+..+.+.++.. ++.+..++|+....++...+ .+...|+|+| +.+ ...+.+.+
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~~----g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaT-----dv~-~rGIDi~~ 445 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRLD----GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIAT-----DVA-SRGLDVKD 445 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHHc----CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEc-----chh-hcCCCccc
Confidence 4679999999999999999888754 55788888887655543332 3456899999 333 34567888
Q ss_pred CcEEee
Q 047490 92 IKYLVL 97 (323)
Q Consensus 92 ~~~vIi 97 (323)
+++||.
T Consensus 446 v~~VI~ 451 (545)
T PTZ00110 446 VKYVIN 451 (545)
T ss_pred CCEEEE
Confidence 888885
|
|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=88.11 E-value=1.9 Score=43.85 Aligned_cols=79 Identities=24% Similarity=0.195 Sum_probs=54.0
Q ss_pred cCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC----CCeeE--EecCCCCHHHHHHHHHhccccCCCC
Q 047490 178 SGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN----QISTV--NYHGEVPAQERVENLNKFKNEDGDC 251 (323)
Q Consensus 178 ~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~--~~~~~~~~~~r~~~~~~f~~~~g~~ 251 (323)
+.+..|...++-++.....++.+++|.+|++..+..+++.++.. +..+. ..+++++..++.+..+.+.+ +..
T Consensus 103 pTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~--~~~ 180 (1176)
T PRK09401 103 PTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKE--GDF 180 (1176)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhc--CCC
Confidence 44555554322222111235679999999999999999888765 33333 34566667788888888887 888
Q ss_pred CEEEEec
Q 047490 252 PTLVCTD 258 (323)
Q Consensus 252 ~ilv~t~ 258 (323)
+|+|+|+
T Consensus 181 ~IlV~Tp 187 (1176)
T PRK09401 181 DILVTTS 187 (1176)
T ss_pred CEEEECH
Confidence 9999996
|
|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=88.05 E-value=0.52 Score=45.21 Aligned_cols=39 Identities=31% Similarity=0.407 Sum_probs=27.7
Q ss_pred CCCEEEeChHHHHHHHHc-CCCCCC--CCcEEeecchhhhhc
Q 047490 67 PIDMVVGTPGRILQHIED-GNMVYG--DIKYLVLDEADTMFD 105 (323)
Q Consensus 67 ~~~Iii~Tp~~l~~~~~~-~~~~~~--~~~~vIiDE~h~~~~ 105 (323)
.++|+|++..-|+..+.. ....+. ..+++||||||++.+
T Consensus 219 ~AdivVtNH~LLladl~~~~~~iLp~~~~~~lViDEAH~L~d 260 (697)
T PRK11747 219 EADVVVANHDLVLADLELGGGVVLPDPENLLYVLDEGHHLPD 260 (697)
T ss_pred hCCEEEECcHHHHhhhhccCCcccCCCCCCEEEEECccchHH
Confidence 368999999988766532 222233 478899999999863
|
|
| >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=87.67 E-value=4.1 Score=36.14 Aligned_cols=123 Identities=15% Similarity=0.149 Sum_probs=78.9
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcc---------ccccCCCCCEEEeChHHHHHHHH-
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ---------EDSLNNPIDMVVGTPGRILQHIE- 83 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~Iii~Tp~~l~~~~~- 83 (323)
..-..--+|+.|+..++......+.+.... ..+...++|+...... ......++.++..|.+.|.+-+-
T Consensus 82 ~~ytFdnFv~g~~N~~A~aa~~~va~~~g~-~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~ 160 (408)
T COG0593 82 PKYTFDNFVVGPSNRLAYAAAKAVAENPGG-AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVK 160 (408)
T ss_pred CCCchhheeeCCchHHHHHHHHHHHhccCC-cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHH
Confidence 344567789999999998888888776543 4578889998876542 11122345799999988753321
Q ss_pred ---cC-----CCCCCCCcEEeecchhhhhcCC-ChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhH
Q 047490 84 ---DG-----NMVYGDIKYLVLDEADTMFDRG-FGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQ 145 (323)
Q Consensus 84 ---~~-----~~~~~~~~~vIiDE~h~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~ 145 (323)
.+ ...+ +++++++|+++.+.... ....+-.++..+.... -|+++.|..+|.++.
T Consensus 161 a~~~~~~~~Fk~~y-~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~-------kqIvltsdr~P~~l~ 223 (408)
T COG0593 161 ALRDNEMEKFKEKY-SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENG-------KQIVLTSDRPPKELN 223 (408)
T ss_pred HHHhhhHHHHHHhh-ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcC-------CEEEEEcCCCchhhc
Confidence 11 1235 89999999999887643 3344445555554432 166666666665554
|
|
| >PRK12422 chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=87.58 E-value=6.7 Score=35.53 Aligned_cols=120 Identities=12% Similarity=0.221 Sum_probs=65.1
Q ss_pred cEEEEcCCHHHHHHHHHHHHHhcc---ccceeEEEeecCccCCcc-------ccccCCCCCEEEeChHHHHHHHHc----
Q 047490 19 RAVVLCPTRELSEQVFRVAKSISH---HARFRSTMVSGGGRLRPQ-------EDSLNNPIDMVVGTPGRILQHIED---- 84 (323)
Q Consensus 19 ~~lvl~P~~~L~~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-------~~~~~~~~~Iii~Tp~~l~~~~~~---- 84 (323)
--.++.|...++...+..+.+... ....+...++|+...... ......+..+++.+.+.|...+..
T Consensus 111 dnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~ 190 (445)
T PRK12422 111 ANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRS 190 (445)
T ss_pred cceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhc
Confidence 345667777777666665544221 112356778887765432 111123578899998877544321
Q ss_pred CC-----CCCCCCcEEeecchhhhhcCC-ChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhH
Q 047490 85 GN-----MVYGDIKYLVLDEADTMFDRG-FGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQ 145 (323)
Q Consensus 85 ~~-----~~~~~~~~vIiDE~h~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~ 145 (323)
.. ..+.+.+++++||+|.+.... ....+..++..+... ..++|+.|..++..+.
T Consensus 191 ~~~~~f~~~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~-------~k~IIlts~~~p~~l~ 250 (445)
T PRK12422 191 GEMQRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTE-------GKLIVISSTCAPQDLK 250 (445)
T ss_pred chHHHHHHHcccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHC-------CCcEEEecCCCHHHHh
Confidence 11 125678999999999876432 223333444333221 1145555545554443
|
|
| >KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=86.88 E-value=2.5 Score=38.07 Aligned_cols=70 Identities=16% Similarity=0.178 Sum_probs=50.5
Q ss_pred CCeEEEEecCcccHHHHHHHH----hhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc------cccccCC-
Q 047490 198 GNKVMVFCNTLNSSRAVDHFL----NENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL------AARGLDL- 266 (323)
Q Consensus 198 ~~~~lvf~~~~~~~~~l~~~l----~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~------~~~Gid~- 266 (323)
+.=.+|.|+++..|..+.... +..++.+..+||+.+..++..-++ . | ..|+|||+- --.++|+
T Consensus 296 gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk---~--g-~EivVaTPgRlid~VkmKatn~~ 369 (731)
T KOG0339|consen 296 GPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK---E--G-AEIVVATPGRLIDMVKMKATNLS 369 (731)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh---c--C-CeEEEechHHHHHHHHhhcccce
Confidence 344578899999888876544 445889999999999888776665 2 2 248999971 1236788
Q ss_pred CCCEEEE
Q 047490 267 DVDHVIM 273 (323)
Q Consensus 267 ~~~~vi~ 273 (323)
+++.+++
T Consensus 370 rvS~LV~ 376 (731)
T KOG0339|consen 370 RVSYLVL 376 (731)
T ss_pred eeeEEEE
Confidence 8887776
|
|
| >cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily | Back alignment and domain information |
|---|
Probab=86.53 E-value=1.4 Score=29.69 Aligned_cols=38 Identities=18% Similarity=0.346 Sum_probs=32.2
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCC
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 233 (323)
+...++++||.+-..+...+..|+..|+.+..+.|++.
T Consensus 49 ~~~~~vvl~c~~g~~a~~~a~~L~~~G~~v~~l~GG~~ 86 (90)
T cd01524 49 PKDKEIIVYCAVGLRGYIAARILTQNGFKVKNLDGGYK 86 (90)
T ss_pred CCCCcEEEEcCCChhHHHHHHHHHHCCCCEEEecCCHH
Confidence 35678999999987888889999999888888999875
|
Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain. |
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=86.14 E-value=2.1 Score=39.12 Aligned_cols=79 Identities=11% Similarity=0.117 Sum_probs=55.8
Q ss_pred cccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCC
Q 047490 11 VLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGN 86 (323)
Q Consensus 11 ~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~ 86 (323)
.+......++||.|+++.-+..+.+.+.+. ++.+..++|+.....+...+ .+...|+|+| +.+. ..
T Consensus 329 ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT-----~~l~-~G 398 (475)
T PRK01297 329 LVTQNPWERVMVFANRKDEVRRIEERLVKD----GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVAT-----DVAG-RG 398 (475)
T ss_pred HHHhcCCCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEc-----cccc-cC
Confidence 334455679999999999988888877654 56788888876655543332 3457899999 3333 45
Q ss_pred CCCCCCcEEeecc
Q 047490 87 MVYGDIKYLVLDE 99 (323)
Q Consensus 87 ~~~~~~~~vIiDE 99 (323)
+.+.++++||.-.
T Consensus 399 IDi~~v~~VI~~~ 411 (475)
T PRK01297 399 IHIDGISHVINFT 411 (475)
T ss_pred CcccCCCEEEEeC
Confidence 7788899888644
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=86.11 E-value=2.5 Score=39.94 Aligned_cols=60 Identities=12% Similarity=0.126 Sum_probs=53.0
Q ss_pred CCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc
Q 047490 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL 259 (323)
Q Consensus 198 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~ 259 (323)
++.++|.+|....++.-...|+..+..+..+|++++..++..++..... |..++++.|+-
T Consensus 53 ~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~--~~~~il~~tpe 112 (591)
T TIGR01389 53 KGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVN--GELKLLYVAPE 112 (591)
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhC--CCCCEEEEChh
Confidence 4578999999998888888888899999999999999999999999888 88999988853
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length | Back alignment and domain information |
|---|
Probab=86.06 E-value=1.6 Score=35.23 Aligned_cols=67 Identities=21% Similarity=0.210 Sum_probs=38.4
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHhcccc-ceeE--EEeecCccCCcc-----cc---ccCCCCCEEEeChHHHHHH
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHA-RFRS--TMVSGGGRLRPQ-----ED---SLNNPIDMVVGTPGRILQH 81 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~-----~~---~~~~~~~Iii~Tp~~l~~~ 81 (323)
.+++.-+.++|| ++|..|....+++.+... +-++ ..+.-....... .+ .......|+++||+.+..+
T Consensus 67 Adg~~LvrviVp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf 144 (229)
T PF12340_consen 67 ADGSRLVRVIVP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSF 144 (229)
T ss_pred cCCCcEEEEEcC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHH
Confidence 344557777777 789999999998887543 1112 222222222111 00 1112347999999999655
|
There are two conserved sequence motifs: LLE and NMG. |
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Probab=86.01 E-value=3.2 Score=29.84 Aligned_cols=76 Identities=11% Similarity=0.308 Sum_probs=51.1
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccc---c-CCCCCEEEeChHHHHHHHHcCCCCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS---L-NNPIDMVVGTPGRILQHIEDGNMVYGD 91 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~Iii~Tp~~l~~~~~~~~~~~~~ 91 (323)
++.++||.+++..-+.++.+.+++. +..+..++|+......... + .+...|+++|.. ....+.+..
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~------~~~G~d~~~ 96 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKP----GIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDV------IARGIDLPN 96 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhc----CCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcCh------hhcCcChhh
Confidence 4678999999999999999888872 4567788887654332222 2 334579998842 223455667
Q ss_pred CcEEeecchh
Q 047490 92 IKYLVLDEAD 101 (323)
Q Consensus 92 ~~~vIiDE~h 101 (323)
.+.+|+.+..
T Consensus 97 ~~~vi~~~~~ 106 (131)
T cd00079 97 VSVVINYDLP 106 (131)
T ss_pred CCEEEEeCCC
Confidence 7777776664
|
|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=85.77 E-value=5.7 Score=30.10 Aligned_cols=95 Identities=16% Similarity=0.164 Sum_probs=59.3
Q ss_pred eEEeccCChhHHHHHHHHhcc-CCC-CCCeEEEEecCcccHHHHHHHHhhC----CCeeEEecCCCCHH-HHHHHHHhcc
Q 047490 173 DFIKLSGSENKLEALLQVLEP-SLS-KGNKVMVFCNTLNSSRAVDHFLNEN----QISTVNYHGEVPAQ-ERVENLNKFK 245 (323)
Q Consensus 173 ~~~~~~~~~~k~~~l~~~l~~-~~~-~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~-~r~~~~~~f~ 245 (323)
.....+.+..|.....-.+.. ..+ +..++++.+|+...++...+.+... +..+..++++.+.. +....+
T Consensus 17 ~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 92 (169)
T PF00270_consen 17 VLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVL---- 92 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHH----
T ss_pred EEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccccccccccccccccc----
Confidence 344555566666544422222 212 3359999999999999998877654 45778889988744 333333
Q ss_pred ccCCCCCEEEEecc-c----c-cccCC-CCCEEEE
Q 047490 246 NEDGDCPTLVCTDL-A----A-RGLDL-DVDHVIM 273 (323)
Q Consensus 246 ~~~g~~~ilv~t~~-~----~-~Gid~-~~~~vi~ 273 (323)
. +...|+|+|.. + . ...++ +++.+|+
T Consensus 93 ~--~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iVi 125 (169)
T PF00270_consen 93 S--NQADILVTTPEQLLDLISNGKINISRLSLIVI 125 (169)
T ss_dssp H--TTSSEEEEEHHHHHHHHHTTSSTGTTESEEEE
T ss_pred c--ccccccccCcchhhccccccccccccceeecc
Confidence 3 66779999962 1 1 12456 6776665
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=85.50 E-value=2.8 Score=34.29 Aligned_cols=73 Identities=3% Similarity=-0.072 Sum_probs=38.0
Q ss_pred eEEEeecCccCCccc-------cccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEeecchhhhhcCC-ChhhHHHHHhh
Q 047490 47 RSTMVSGGGRLRPQE-------DSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRG-FGPDIRKFLVP 118 (323)
Q Consensus 47 ~~~~~~~~~~~~~~~-------~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~-~~~~~~~i~~~ 118 (323)
....++|.......- .....+..+.+.+.+........-...+.+++++++||+|.+.... +...+..++..
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~dlliiDdi~~~~~~~~~~~~lf~l~n~ 125 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWFVPEVLEGMEQLSLVCIDNIECIAGDELWEMAIFDLYNR 125 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhhhHHHHHHhhhCCEEEEeChhhhcCCHHHHHHHHHHHHH
Confidence 566777766554321 1112345677777665433222111123456899999999875422 22334444444
Q ss_pred h
Q 047490 119 L 119 (323)
Q Consensus 119 ~ 119 (323)
+
T Consensus 126 ~ 126 (235)
T PRK08084 126 I 126 (235)
T ss_pred H
Confidence 4
|
|
| >cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily | Back alignment and domain information |
|---|
Probab=85.19 E-value=2 Score=29.57 Aligned_cols=38 Identities=24% Similarity=0.319 Sum_probs=32.7
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCC
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 233 (323)
.+..+++++|.+-..+...+..|+..|+.+..+.|++.
T Consensus 59 ~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 96 (100)
T cd01523 59 PDDQEVTVICAKEGSSQFVAELLAERGYDVDYLAGGMK 96 (100)
T ss_pred CCCCeEEEEcCCCCcHHHHHHHHHHcCceeEEeCCcHH
Confidence 35679999999988889999999999998888888875
|
This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain. |
| >KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.84 E-value=1.8 Score=41.15 Aligned_cols=76 Identities=17% Similarity=0.317 Sum_probs=52.3
Q ss_pred HHhccccCCCCCEEEEecccccccCC-CCC--------EEEEcCCCCCchhhhhhhcccccCCC-cce-EEEEeeC--Cc
Q 047490 241 LNKFKNEDGDCPTLVCTDLAARGLDL-DVD--------HVIMFDFPLNSIDYLHRTGRTARMGA-KGK-VTSLVAK--KD 307 (323)
Q Consensus 241 ~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~--------~vi~~~~p~s~~~~~Q~~GR~~R~~~-~g~-~~~~~~~--~~ 307 (323)
-++|.. |+..|-|-+.+...||.+ .=. .=|-..+|||.+.-+|..||.+|..+ .+. .+.+++. .+
T Consensus 850 KqrFM~--GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIseLAGE 927 (1300)
T KOG1513|consen 850 KQRFMD--GEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISELAGE 927 (1300)
T ss_pred Hhhhcc--ccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehhhccc
Confidence 457777 888888888999999998 322 23456899999999999999999875 232 2333332 45
Q ss_pred HHHHHHHHHHH
Q 047490 308 VLLADRIEEAI 318 (323)
Q Consensus 308 ~~~~~~i~~~l 318 (323)
.....-+.+-|
T Consensus 928 rRFAS~VAKRL 938 (1300)
T KOG1513|consen 928 RRFASIVAKRL 938 (1300)
T ss_pred hHHHHHHHHHH
Confidence 55544444443
|
|
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=84.54 E-value=3.1 Score=38.05 Aligned_cols=85 Identities=9% Similarity=0.263 Sum_probs=63.4
Q ss_pred hhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHH
Q 047490 8 MLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIE 83 (323)
Q Consensus 8 ~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~ 83 (323)
+...+...-.|.+||-+-+.+.+.|+..++.. ..++++..++|+.......+.+ .+...++||| +++.
T Consensus 378 ~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~---~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicT-----dll~ 449 (593)
T KOG0344|consen 378 LRQLVASGFKPPVLIFVQSKERAKQLFEELEI---YDNINVDVIHGERSQKQRDETMERFRIGKIWVLICT-----DLLA 449 (593)
T ss_pred HHHHHhccCCCCeEEEEecHHHHHHHHHHhhh---ccCcceeeEecccchhHHHHHHHHHhccCeeEEEeh-----hhhh
Confidence 34445555678999999999999999998872 3478999999986554433322 3446799999 6666
Q ss_pred cCCCCCCCCcEEeecchh
Q 047490 84 DGNMVYGDIKYLVLDEAD 101 (323)
Q Consensus 84 ~~~~~~~~~~~vIiDE~h 101 (323)
++ +.+.++++||-++.-
T Consensus 450 RG-iDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 450 RG-IDFKGVNLVINYDFP 466 (593)
T ss_pred cc-ccccCcceEEecCCC
Confidence 65 788999999997775
|
|
| >PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase | Back alignment and domain information |
|---|
Probab=84.17 E-value=1.4 Score=34.16 Aligned_cols=99 Identities=18% Similarity=0.210 Sum_probs=38.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEe
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLV 96 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vI 96 (323)
..+++|-+|+.+=++.+.+.+..-....+.+....... ........++..|-+..|+.+... ....+++|
T Consensus 26 ~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~i~f~~Pd~l~~~-------~~~~Dlli 95 (177)
T PF05127_consen 26 KIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRI---GQIIKLRFNKQRIEFVAPDELLAE-------KPQADLLI 95 (177)
T ss_dssp ---EEEE-SS--S-HHHHHCC-----------------------------CCC--B--HHHHCCT-----------SCEE
T ss_pred CceEEEecCCHHHHHHHHHHHHhhcccccccccccccc---ccccccccccceEEEECCHHHHhC-------cCCCCEEE
Confidence 36899999999988877776655544333222000000 000011112356777777755432 22458999
Q ss_pred ecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecc
Q 047490 97 LDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMT 141 (323)
Q Consensus 97 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~ 141 (323)
||||=.+ --+.+..++... ..+++|.|..
T Consensus 96 VDEAAaI----p~p~L~~ll~~~------------~~vv~stTi~ 124 (177)
T PF05127_consen 96 VDEAAAI----PLPLLKQLLRRF------------PRVVFSTTIH 124 (177)
T ss_dssp ECTGGGS-----HHHHHHHHCCS------------SEEEEEEEBS
T ss_pred EechhcC----CHHHHHHHHhhC------------CEEEEEeecc
Confidence 9999754 224444544322 5677888874
|
This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B. |
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=84.16 E-value=6.6 Score=30.99 Aligned_cols=72 Identities=19% Similarity=0.289 Sum_probs=48.5
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhC----CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc-----cccc-cCC
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNEN----QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL-----AARG-LDL 266 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~-----~~~G-id~ 266 (323)
.+.++++.+++...+....+.++.. +..+..++|+.+...... .+. +...|+|+|+. +..+ .++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~iiv~T~~~l~~~l~~~~~~~ 141 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIR---KLK---RGPHIVVATPGRLLDLLERGKLDL 141 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH---Hhc---CCCCEEEEChHHHHHHHHcCCCCh
Confidence 4568999999999888887766554 667788899887655432 222 44579999952 2222 456
Q ss_pred -CCCEEEEc
Q 047490 267 -DVDHVIMF 274 (323)
Q Consensus 267 -~~~~vi~~ 274 (323)
+++.+|.=
T Consensus 142 ~~l~~lIvD 150 (203)
T cd00268 142 SKVKYLVLD 150 (203)
T ss_pred hhCCEEEEe
Confidence 67776653
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=83.86 E-value=1.4 Score=37.19 Aligned_cols=44 Identities=23% Similarity=0.266 Sum_probs=26.5
Q ss_pred CCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEE
Q 047490 90 GDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137 (323)
Q Consensus 90 ~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~s 137 (323)
-.++++||||+|.++... ....+..+..++...... ++.+|+++
T Consensus 144 ~~vrmLIIDE~H~lLaGs-~~~qr~~Ln~LK~L~NeL---~ipiV~vG 187 (302)
T PF05621_consen 144 LGVRMLIIDEFHNLLAGS-YRKQREFLNALKFLGNEL---QIPIVGVG 187 (302)
T ss_pred cCCcEEEeechHHHhccc-HHHHHHHHHHHHHHhhcc---CCCeEEec
Confidence 357999999999987743 333444444444433222 44677663
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase) | Back alignment and domain information |
|---|
Probab=83.75 E-value=4.4 Score=37.10 Aligned_cols=30 Identities=20% Similarity=0.186 Sum_probs=26.3
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHhccc
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHH 43 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~ 43 (323)
..+++.+++.+++++-+..+.+.++.+...
T Consensus 51 g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 51 GEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 355789999999999999999999998765
|
The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. |
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=83.67 E-value=16 Score=35.09 Aligned_cols=77 Identities=13% Similarity=0.221 Sum_probs=54.2
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccc---c-cCCCCCEEEeChHHHHHHHHcCCCCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQED---S-LNNPIDMVVGTPGRILQHIEDGNMVYGD 91 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~Iii~Tp~~l~~~~~~~~~~~~~ 91 (323)
++.+++|.|+|+..+..+.+.+... ++.+..++|+.....+.. . ..+..+|+|+| ..+. ..+.+..
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~----gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t-----~~L~-rGfdlp~ 514 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKEL----GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGI-----NLLR-EGLDIPE 514 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhc----ceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEe-----CHHh-CCccccC
Confidence 4778999999999988888877664 678888888755332222 1 23457889988 3333 4677889
Q ss_pred CcEEeecchhh
Q 047490 92 IKYLVLDEADT 102 (323)
Q Consensus 92 ~~~vIiDE~h~ 102 (323)
++++|+=|++.
T Consensus 515 v~lVii~d~ei 525 (652)
T PRK05298 515 VSLVAILDADK 525 (652)
T ss_pred CcEEEEeCCcc
Confidence 99988877764
|
|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=83.58 E-value=2.9 Score=37.23 Aligned_cols=77 Identities=9% Similarity=0.163 Sum_probs=54.4
Q ss_pred cCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCC
Q 047490 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMV 88 (323)
Q Consensus 13 ~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~ 88 (323)
......++||.|+++.-+..+.+.+... +..+..++|+....++...+ .+..+|+|+| +. -...+.
T Consensus 263 ~~~~~~~~ivF~~t~~~~~~l~~~l~~~----~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT-----~~-l~~GiD 332 (401)
T PTZ00424 263 ETLTITQAIIYCNTRRKVDYLTKKMHER----DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITT-----DL-LARGID 332 (401)
T ss_pred HhcCCCeEEEEecCcHHHHHHHHHHHHC----CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEc-----cc-ccCCcC
Confidence 3344568999999999988888877664 56788899987655443322 3457999999 32 234567
Q ss_pred CCCCcEEeecc
Q 047490 89 YGDIKYLVLDE 99 (323)
Q Consensus 89 ~~~~~~vIiDE 99 (323)
+.++++||.-+
T Consensus 333 ip~v~~VI~~~ 343 (401)
T PTZ00424 333 VQQVSLVINYD 343 (401)
T ss_pred cccCCEEEEEC
Confidence 88888888533
|
|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=83.15 E-value=5.9 Score=31.93 Aligned_cols=75 Identities=7% Similarity=0.017 Sum_probs=37.4
Q ss_pred HHHHHHHHHhccccceeEEEeecCccCCccc--cc-----cCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEeecchhhh
Q 047490 31 EQVFRVAKSISHHARFRSTMVSGGGRLRPQE--DS-----LNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTM 103 (323)
Q Consensus 31 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vIiDE~h~~ 103 (323)
.+..+.++++.....-....++|........ .. ...+..+++.+...+..........+...+++|+||+|.+
T Consensus 23 ~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~lLvIDdi~~l 102 (226)
T TIGR03420 23 AELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQADPEVLEGLEQADLVCLDDVEAI 102 (226)
T ss_pred HHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhHHHHHhhcccCCEEEEeChhhh
Confidence 3344445554322234566777766554321 11 1123456666655443221111112345679999999987
Q ss_pred hc
Q 047490 104 FD 105 (323)
Q Consensus 104 ~~ 105 (323)
..
T Consensus 103 ~~ 104 (226)
T TIGR03420 103 AG 104 (226)
T ss_pred cC
Confidence 54
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=82.32 E-value=6.6 Score=35.46 Aligned_cols=75 Identities=13% Similarity=0.135 Sum_probs=52.9
Q ss_pred CeEEEEecCcccHHHHHHHHhhC----CCeeEEecCCCCH-HHHHHHHHhccccCCCCCEEEEecc-------cccccCC
Q 047490 199 NKVMVFCNTLNSSRAVDHFLNEN----QISTVNYHGEVPA-QERVENLNKFKNEDGDCPTLVCTDL-------AARGLDL 266 (323)
Q Consensus 199 ~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~-~~r~~~~~~f~~~~g~~~ilv~t~~-------~~~Gid~ 266 (323)
-+++|.++++..+-.++.-|... |..|+.+.|.-+- .+..+....... .+++|||+|+- ...|+++
T Consensus 216 LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~--~~~DIlVaTPGRLVDHl~~~k~f~L 293 (620)
T KOG0350|consen 216 LRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPE--CRIDILVATPGRLVDHLNNTKSFDL 293 (620)
T ss_pred eEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCc--cccceEEcCchHHHHhccCCCCcch
Confidence 58899999999999999888765 5566666665442 233333444443 67789999972 3568888
Q ss_pred -CCCEEEEcC
Q 047490 267 -DVDHVIMFD 275 (323)
Q Consensus 267 -~~~~vi~~~ 275 (323)
++..+|+-.
T Consensus 294 k~LrfLVIDE 303 (620)
T KOG0350|consen 294 KHLRFLVIDE 303 (620)
T ss_pred hhceEEEech
Confidence 888877743
|
|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=82.31 E-value=5.5 Score=32.38 Aligned_cols=90 Identities=13% Similarity=0.074 Sum_probs=43.9
Q ss_pred eEEEeecCccCCcc--c-----cccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEeecchhhhhcCC-ChhhHHHHHhh
Q 047490 47 RSTMVSGGGRLRPQ--E-----DSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRG-FGPDIRKFLVP 118 (323)
Q Consensus 47 ~~~~~~~~~~~~~~--~-----~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~-~~~~~~~i~~~ 118 (323)
....++|....... . .....+..+.+.+..............+.+.+++++||+|.+.... +...+..++..
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~ 119 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFSPAVLENLEQQDLVCLDDLQAVIGNEEWELAIFDLFNR 119 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhhhHHHHhhcccCCEEEEeChhhhcCChHHHHHHHHHHHH
Confidence 34567776654432 0 1111234556666543322111111135678999999999875322 22233344444
Q ss_pred hccccCCCCCCCceEEEEEeecchh
Q 047490 119 LKNRASKPNGQGFQTVLVSATMTKA 143 (323)
Q Consensus 119 ~~~~~~~~~~~~~~~i~~sat~~~~ 143 (323)
.... +-+++++|++.++.
T Consensus 120 ~~~~-------~~~illits~~~p~ 137 (229)
T PRK06893 120 IKEQ-------GKTLLLISADCSPH 137 (229)
T ss_pred HHHc-------CCcEEEEeCCCChH
Confidence 4321 11466777766443
|
|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=82.20 E-value=13 Score=35.38 Aligned_cols=83 Identities=13% Similarity=0.035 Sum_probs=55.1
Q ss_pred ccCChhHHHHH-HHHhccCCCCCCeEEEEecCcccHHHHHHHHhh----CCCeeEEecCCCCHHHHHHHHHhccccCCCC
Q 047490 177 LSGSENKLEAL-LQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE----NQISTVNYHGEVPAQERVENLNKFKNEDGDC 251 (323)
Q Consensus 177 ~~~~~~k~~~l-~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~ 251 (323)
...++.|.-.. +..+.. ...+.+++|.++|...|...++.+.. .+..+..+.|++++.+++.. -.+
T Consensus 123 ~~TGeGKTla~~lp~~~~-al~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv~~i~gg~~~~~r~~~--------y~~ 193 (656)
T PRK12898 123 MQTGEGKTLTATLPAGTA-ALAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPDERRAA--------YGA 193 (656)
T ss_pred eeCCCCcHHHHHHHHHHH-hhcCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEEEEEeCCCCHHHHHHH--------cCC
Confidence 34455554333 333322 23578999999999998877776654 58899999999987655431 234
Q ss_pred CEEEEecccccccCC-CCC
Q 047490 252 PTLVCTDLAARGLDL-DVD 269 (323)
Q Consensus 252 ~ilv~t~~~~~Gid~-~~~ 269 (323)
+|+++|.. +-|+|. .=.
T Consensus 194 dIvygT~~-e~~FDyLrd~ 211 (656)
T PRK12898 194 DITYCTNK-ELVFDYLRDR 211 (656)
T ss_pred CEEEECCC-chhhhhcccc
Confidence 68888875 567887 443
|
|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=82.15 E-value=3.1 Score=36.46 Aligned_cols=74 Identities=9% Similarity=0.204 Sum_probs=49.4
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCc
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIK 93 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~ 93 (323)
+.++.++||.++|..-+..+++.+++.. .+..+..++|......+.+.. ..+|+|+|. .+.+ .+.++..
T Consensus 269 ~~~~~k~LIf~nt~~~~~~l~~~L~~~~--~~~~~~~l~g~~~~~~R~~~~--~~~iLVaTd-----v~~r-GiDi~~~- 337 (357)
T TIGR03158 269 QLPGERGAIILDSLDEVNRLSDLLQQQG--LGDDIGRITGFAPKKDRERAM--QFDILLGTS-----TVDV-GVDFKRD- 337 (357)
T ss_pred ccCCCeEEEEECCHHHHHHHHHHHhhhC--CCceEEeeecCCCHHHHHHhc--cCCEEEEec-----HHhc-ccCCCCc-
Confidence 3456789999999999999999998753 234566777776554443332 468999993 3443 3444444
Q ss_pred EEeec
Q 047490 94 YLVLD 98 (323)
Q Consensus 94 ~vIiD 98 (323)
.+|+|
T Consensus 338 ~vi~~ 342 (357)
T TIGR03158 338 WLIFS 342 (357)
T ss_pred eEEEC
Confidence 56664
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=81.71 E-value=20 Score=34.89 Aligned_cols=78 Identities=19% Similarity=0.316 Sum_probs=46.4
Q ss_pred CeEEEEecCcccHHHHHHHHhhC-------CCeeEEecCCCCHHHHHHHHHhccc------cCCCCCEEEEecccccccC
Q 047490 199 NKVMVFCNTLNSSRAVDHFLNEN-------QISTVNYHGEVPAQERVENLNKFKN------EDGDCPTLVCTDLAARGLD 265 (323)
Q Consensus 199 ~~~lvf~~~~~~~~~l~~~l~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~------~~g~~~ilv~t~~~~~Gid 265 (323)
..+|+|.++-..-+.+..+.+.. ...- ++.+.-++.+-.+++..|.+ ..|..-+.||=....+|+|
T Consensus 562 ~G~L~FfPSY~vmdk~~tfw~~~~~we~~~~vk~-l~vEPr~k~~f~e~m~~y~~~i~~pes~ga~~~aVcRGKVSEGlD 640 (945)
T KOG1132|consen 562 YGLLIFFPSYPVMDKLITFWQNRGLWERMEKVKK-LVVEPRSKSEFTEVMSRYYNAIADPESSGAVFFAVCRGKVSEGLD 640 (945)
T ss_pred cceEEeccchHHHHHHHHHHHcchHHHHhhcccC-ceeccCCccchHHHHHHHHHHhhCccccceEEEEEecccccCCCC
Confidence 45999999987666664443321 1111 22222244444555555554 1234344566678899999
Q ss_pred C-C--CCEEEEcCCC
Q 047490 266 L-D--VDHVIMFDFP 277 (323)
Q Consensus 266 ~-~--~~~vi~~~~p 277 (323)
+ + ...||..|.|
T Consensus 641 FsD~~~RaVI~tGlP 655 (945)
T KOG1132|consen 641 FSDDNGRAVIITGLP 655 (945)
T ss_pred ccccCCceeEEecCC
Confidence 9 5 7789999987
|
|
| >PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2 | Back alignment and domain information |
|---|
Probab=81.53 E-value=5.2 Score=29.57 Aligned_cols=81 Identities=20% Similarity=0.217 Sum_probs=45.1
Q ss_pred HHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccc
Q 047490 184 LEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARG 263 (323)
Q Consensus 184 ~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~G 263 (323)
...+..++...+..|.+++|+|++...++.+-+.|=.......+=|+-.... .. ....|+|+++...
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~---------~~--~~~PV~i~~~~~~-- 81 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGLAGEP---------PA--ARQPVLITWDQEA-- 81 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEETT-S---------ST--T--SEEEE-TTS---
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcccCCC---------CC--CCCeEEEecCccc--
Confidence 4666677777777899999999999999999998866655556666543211 11 3357999987643
Q ss_pred cCC-CCCEEEEcCCC
Q 047490 264 LDL-DVDHVIMFDFP 277 (323)
Q Consensus 264 id~-~~~~vi~~~~p 277 (323)
-.. ..+.+|+.+..
T Consensus 82 ~~~~~~~vLinL~~~ 96 (137)
T PF04364_consen 82 NPNNHADVLINLSGE 96 (137)
T ss_dssp ---S--SEEEE--SS
T ss_pred CCCCCCCEEEECCCC
Confidence 122 37888887643
|
7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C. |
| >COG3421 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=81.13 E-value=15 Score=34.18 Aligned_cols=41 Identities=20% Similarity=0.310 Sum_probs=28.5
Q ss_pred CCCCCEEEeChHHHHHHHHcC---CCC---CCCCcE-Eeecchhhhhc
Q 047490 65 NNPIDMVVGTPGRILQHIEDG---NMV---YGDIKY-LVLDEADTMFD 105 (323)
Q Consensus 65 ~~~~~Iii~Tp~~l~~~~~~~---~~~---~~~~~~-vIiDE~h~~~~ 105 (323)
+++..|.++|.+.+...+.+. ... +.+..+ ++-||+|++..
T Consensus 79 nd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~ 126 (812)
T COG3421 79 NDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNT 126 (812)
T ss_pred CCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhh
Confidence 456789999999998777543 222 333444 47899999864
|
|
| >PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes | Back alignment and domain information |
|---|
Probab=81.02 E-value=1.9 Score=28.96 Aligned_cols=57 Identities=12% Similarity=0.207 Sum_probs=34.2
Q ss_pred cEEEEcCCHHHHHHHH-HHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHH
Q 047490 19 RAVVLCPTRELSEQVF-RVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI 78 (323)
Q Consensus 19 ~~lvl~P~~~L~~q~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l 78 (323)
++|++|++=--...+. ..+++.+...++.+....+. ........+++|++++||+--
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~~~~~~~~---~~~~~~~~~~~D~il~~~~i~ 58 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIEVEVSAGS---ILEVEEIADDADLILLTPQIA 58 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTECEEEEEEE---TTTHHHHHTT-SEEEEEESSG
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCceEEEEec---ccccccccCCCcEEEEcCccc
Confidence 4788887654444444 66666666667666666555 112223344589999999744
|
The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A .... |
| >COG3587 Restriction endonuclease [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=80.86 E-value=5.4 Score=38.48 Aligned_cols=73 Identities=18% Similarity=0.234 Sum_probs=57.8
Q ss_pred CCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCC--Ccce-----------EEEEeeCCcHHHHHHHH
Q 047490 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMG--AKGK-----------VTSLVAKKDVLLADRIE 315 (323)
Q Consensus 250 ~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~--~~g~-----------~~~~~~~~~~~~~~~i~ 315 (323)
.++.+++..++.+|.|= ++-.++-.....|...=.|-+||.-|.. +.|. -.+++...+....+.++
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~Lq 562 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKALQ 562 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHHH
Confidence 46789999999999999 8988999888888888899999999954 3342 33466677788888888
Q ss_pred HHHHhcC
Q 047490 316 EAIRKNE 322 (323)
Q Consensus 316 ~~l~~~~ 322 (323)
+...+++
T Consensus 563 kEI~~~s 569 (985)
T COG3587 563 KEINDES 569 (985)
T ss_pred HHHHHhh
Confidence 7766543
|
|
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
Probab=80.78 E-value=11 Score=29.74 Aligned_cols=40 Identities=23% Similarity=0.315 Sum_probs=22.4
Q ss_pred CCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEee
Q 047490 89 YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSAT 139 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat 139 (323)
....+++|+||+..+. ...+..++..+... +.++|++.-+
T Consensus 91 ~~~~~vliVDEasmv~----~~~~~~ll~~~~~~-------~~klilvGD~ 130 (196)
T PF13604_consen 91 LPKKDVLIVDEASMVD----SRQLARLLRLAKKS-------GAKLILVGDP 130 (196)
T ss_dssp -TSTSEEEESSGGG-B----HHHHHHHHHHS-T--------T-EEEEEE-T
T ss_pred CCcccEEEEecccccC----HHHHHHHHHHHHhc-------CCEEEEECCc
Confidence 4556799999998763 24555566555442 2266666554
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=80.57 E-value=4.7 Score=37.38 Aligned_cols=72 Identities=11% Similarity=0.278 Sum_probs=52.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCCCCCC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMVYGDI 92 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~~~~~ 92 (323)
.+++||.++++.-+..+.+.+... .++++..++|+....++...+ .+..+|+|+|. .+. ..+.+.++
T Consensus 367 ~~~~iVFv~s~~~a~~l~~~L~~~---~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTd-----vl~-rGiDip~v 437 (518)
T PLN00206 367 KPPAVVFVSSRLGADLLANAITVV---TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATG-----VLG-RGVDLLRV 437 (518)
T ss_pred CCCEEEEcCCchhHHHHHHHHhhc---cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEec-----Hhh-ccCCcccC
Confidence 467999999999998888877653 256788899887665544333 35678999993 333 35678889
Q ss_pred cEEee
Q 047490 93 KYLVL 97 (323)
Q Consensus 93 ~~vIi 97 (323)
++||.
T Consensus 438 ~~VI~ 442 (518)
T PLN00206 438 RQVII 442 (518)
T ss_pred CEEEE
Confidence 88885
|
|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=80.36 E-value=17 Score=33.06 Aligned_cols=83 Identities=18% Similarity=0.294 Sum_probs=58.5
Q ss_pred ccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCC--------cccccc----CCCCCEEEeChHH
Q 047490 10 GVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLR--------PQEDSL----NNPIDMVVGTPGR 77 (323)
Q Consensus 10 ~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~----~~~~~Iii~Tp~~ 77 (323)
..+.+..+.++||.+..++-+..+.+.+.+.+.... +.+.|..+.. .+...+ ++.++++|+|
T Consensus 359 e~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~---~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaT--- 432 (542)
T COG1111 359 EQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKAR---VRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVAT--- 432 (542)
T ss_pred HHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcce---eEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEc---
Confidence 344566678999999999999999999998865432 3555533222 122211 4568999999
Q ss_pred HHHHHHcCCCCCCCCcEEeecchh
Q 047490 78 ILQHIEDGNMVYGDIKYLVLDEAD 101 (323)
Q Consensus 78 l~~~~~~~~~~~~~~~~vIiDE~h 101 (323)
.+-...+....+++||+=|+=
T Consensus 433 ---SVgEEGLDIp~vDlVifYEpv 453 (542)
T COG1111 433 ---SVGEEGLDIPEVDLVIFYEPV 453 (542)
T ss_pred ---ccccccCCCCcccEEEEecCC
Confidence 244567889999999997773
|
|
| >cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) | Back alignment and domain information |
|---|
Probab=80.14 E-value=8.2 Score=25.65 Aligned_cols=53 Identities=8% Similarity=0.082 Sum_probs=29.7
Q ss_pred cEEEEcCCHH-HHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChH
Q 047490 19 RAVVLCPTRE-LSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76 (323)
Q Consensus 19 ~~lvl~P~~~-L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~ 76 (323)
+++++||+-- ...-+...++++++..++....-..+.. +. ...++|++++|..
T Consensus 1 kilvvC~~G~~tS~ll~~kl~~~f~~~~i~~~~~~~~~~--~~---~~~~~DlIisT~~ 54 (86)
T cd05563 1 KILAVCGSGLGSSLMLKMNVEKVLKELGIEAEVEHTDLG--SA---KASSADIIVTSKD 54 (86)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHHCCCcEEEEEeccc--cc---CCCCCCEEEEchh
Confidence 4789998733 4444455677766555544333222211 11 1345899999974
|
In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 323 | ||||
| 2db3_A | 434 | Structural Basis For Rna Unwinding By The Dead-Box | 7e-37 | ||
| 2i4i_A | 417 | Crystal Structure Of Human Dead-Box Rna Helicase Dd | 3e-36 | ||
| 1hv8_A | 367 | Crystal Structure Of A Dead Box Protein From The Hy | 6e-31 | ||
| 2z0m_A | 337 | Crystal Structure Of Hypothetical Atp-Dependent Rna | 2e-28 | ||
| 2j0u_B | 374 | The Crystal Structure Of Eif4aiii-Barentsz Complex | 1e-27 | ||
| 1s2m_A | 400 | Crystal Structure Of The Dead Box Protein Dhh1p Len | 3e-27 | ||
| 2j0u_A | 374 | The Crystal Structure Of Eif4aiii-Barentsz Complex | 7e-27 | ||
| 2hxy_A | 391 | Crystal Structure Of Human Apo-Eif4aiii Length = 39 | 7e-27 | ||
| 2j0q_A | 410 | The Crystal Structure Of The Exon Junction Complex | 8e-27 | ||
| 2xb2_A | 411 | Crystal Structure Of The Core Mago-Y14-Eif4aiii-Bar | 8e-27 | ||
| 2hyi_C | 413 | Structure Of The Human Exon Junction Complex With A | 8e-27 | ||
| 2vso_A | 395 | Crystal Structure Of A Translation Initiation Compl | 2e-23 | ||
| 3i5x_A | 563 | Structure Of Mss116p Bound To Ssrna And Amp-Pnp Len | 2e-22 | ||
| 3sqx_A | 512 | Structure Of Mss116p (Nte And C-Tail Double Deletio | 2e-22 | ||
| 1xtk_A | 390 | Structure Of Decd To Dead Mutation Of Human Uap56 L | 3e-22 | ||
| 3sqw_A | 579 | Structure Of Mss116p (Nte Deletion) Bound To Ssrna | 3e-22 | ||
| 1xti_A | 391 | Structure Of Wildtype Human Uap56 Length = 391 | 1e-21 | ||
| 1xtj_A | 386 | Structure Of Human Uap56 In Complex With Adp Length | 1e-21 | ||
| 1fuu_A | 394 | Yeast Initiation Factor 4a Length = 394 | 3e-21 | ||
| 3eiq_A | 414 | Crystal Structure Of Pdcd4-eif4a Length = 414 | 3e-20 | ||
| 2zu6_A | 388 | Crystal Structure Of The Eif4a-Pdcd4 Complex Length | 3e-20 | ||
| 3fho_B | 508 | Structure Of S. Pombe Dbp5 Length = 508 | 3e-20 | ||
| 3pew_A | 395 | S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3 | 6e-20 | ||
| 3pey_A | 395 | S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3 Length | 7e-20 | ||
| 1wrb_A | 253 | Crystal Structure Of The N-Terminal Reca-Like Domai | 6e-19 | ||
| 3fe2_A | 242 | Human Dead-Box Rna Helicase Ddx5 (P68), Conserved D | 9e-19 | ||
| 4a4d_A | 253 | Crystal Structure Of The N-Terminal Domain Of The H | 2e-18 | ||
| 3fht_A | 412 | Crystal Structure Of Human Dbp5 In Complex With Amp | 3e-16 | ||
| 3g0h_A | 424 | Human Dead-box Rna Helicase Ddx19, In Complex With | 3e-16 | ||
| 3ews_A | 445 | Human Dead-Box Rna-Helicase Ddx19 In Complex With A | 4e-16 | ||
| 3fmp_B | 479 | Crystal Structure Of The Nucleoporin Nup214 In Comp | 4e-16 | ||
| 3ly5_A | 262 | Ddx18 Dead-Domain Length = 262 | 2e-15 | ||
| 2pl3_A | 236 | Human Dead-Box Rna Helicase Ddx10, Dead Domain In C | 3e-15 | ||
| 2jgn_A | 185 | Ddx3 Helicase Domain Length = 185 | 2e-14 | ||
| 2yjt_D | 170 | Crystal Structure Of E. Coli Dead-Box Protein Srmb | 5e-14 | ||
| 3mwj_A | 207 | Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Ap | 8e-14 | ||
| 2gxq_A | 207 | Hera N-Terminal Domain In Complex With Amp, Crystal | 8e-14 | ||
| 2hjv_A | 163 | Structure Of The Second Domain (Residues 207-368) O | 1e-13 | ||
| 3ber_A | 249 | Human Dead-Box Rna-Helicase Ddx47, Conserved Domain | 7e-13 | ||
| 2wax_A | 193 | Structure Of The Human Ddx6 C-Terminal Domain In Co | 3e-12 | ||
| 1vec_A | 206 | Crystal Structure Of The N-Terminal Domain Of RckP5 | 2e-11 | ||
| 1t5i_A | 172 | Crystal Structure Of The C-Terminal Domain Of Uap56 | 2e-11 | ||
| 1qde_A | 224 | Crystal Structure Of The Atpase Domain Of Translati | 3e-11 | ||
| 1qva_A | 223 | Yeast Initiation Factor 4a N-Terminal Domain Length | 4e-11 | ||
| 3iuy_A | 228 | Crystal Structure Of Ddx53 Dead-Box Domain Length = | 5e-11 | ||
| 3bor_A | 237 | Crystal Structure Of The Deadc Domain Of Human Tran | 4e-10 | ||
| 4db2_A | 257 | Mss116p Dead-Box Helicase Domain 2 Bound To An Rna | 4e-10 | ||
| 4db4_A | 256 | Mss116p Dead-Box Helicase Domain 2 Bound To A Chima | 5e-10 | ||
| 4db2_C | 257 | Mss116p Dead-Box Helicase Domain 2 Bound To An Rna | 5e-10 | ||
| 2p6n_A | 191 | Human Dead-box Rna Helicase Ddx41, Helicase Domain | 2e-09 | ||
| 2rb4_A | 175 | Crystal Structure Of The Helicase Domain Of Human D | 4e-09 | ||
| 2g9n_A | 221 | Structure Of The Dead Domain Of Human Eukaryotic In | 8e-09 | ||
| 2kbe_A | 226 | Solution Structure Of Amino-Terminal Domain Of Dbp5 | 4e-08 | ||
| 1fuk_A | 165 | Crystal Structure Of The Carboxy Terminal Domain Of | 5e-07 | ||
| 3peu_A | 188 | S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To | 7e-07 | ||
| 2kbf_A | 187 | Solution Structure Of Carboxyl-Terminal Domain Of D | 7e-07 | ||
| 3gfp_A | 189 | Structure Of The C-Terminal Domain Of The Dead-Box | 8e-07 | ||
| 1q0u_A | 219 | Crystal Structure Of The Bstdead N-Terminal Domain | 1e-06 | ||
| 2oxc_A | 230 | Human Dead-Box Rna Helicase Ddx20, Dead Domain In C | 2e-06 | ||
| 1t6n_A | 220 | Crystal Structure Of The N-Terminal Domain Of Human | 5e-06 | ||
| 3dkp_A | 245 | Human Dead-Box Rna-Helicase Ddx52, Conserved Domain | 6e-06 | ||
| 3dmq_A | 968 | Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT | 3e-04 | ||
| 3i32_A | 300 | Dimeric Structure Of A Hera Helicase Fragment Inclu | 3e-04 | ||
| 3eaq_A | 212 | Novel Dimerization Motif In The Dead Box Rna Helica | 3e-04 | ||
| 1d2m_A | 665 | Uvrb Protein Of Thermus Thermophilus Hb8; A Nucleot | 7e-04 | ||
| 1c4o_A | 664 | Crystal Structure Of The Dna Nucleotide Excision Re | 7e-04 |
| >pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein Drosophila Vasa Length = 434 | Back alignment and structure |
|
| >pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x Length = 417 | Back alignment and structure |
|
| >pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The Hyperthermophile Methanococcus Jannaschii Length = 367 | Back alignment and structure |
|
| >pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna Helicase From Sulfolobus Tokodaii Length = 337 | Back alignment and structure |
|
| >pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 | Back alignment and structure |
|
| >pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p Length = 400 | Back alignment and structure |
|
| >pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0 A Resolution Length = 374 | Back alignment and structure |
|
| >pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii Length = 391 | Back alignment and structure |
|
| >pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2 A Resolution Length = 410 | Back alignment and structure |
|
| >pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz- Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd Machinery Length = 411 | Back alignment and structure |
|
| >pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A Trapped Dead-Box Helicase Bound To Rna Length = 413 | Back alignment and structure |
|
| >pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex Length = 395 | Back alignment and structure |
|
| >pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp Length = 563 | Back alignment and structure |
|
| >pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion) Bound To Ssrna And Amp-Pnp Length = 512 | Back alignment and structure |
|
| >pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56 Length = 390 | Back alignment and structure |
|
| >pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And Amp-Pnp Length = 579 | Back alignment and structure |
|
| >pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56 Length = 391 | Back alignment and structure |
|
| >pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp Length = 386 | Back alignment and structure |
|
| >pdb|1FUU|A Chain A, Yeast Initiation Factor 4a Length = 394 | Back alignment and structure |
|
| >pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a Length = 414 | Back alignment and structure |
|
| >pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex Length = 388 | Back alignment and structure |
|
| >pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3 Length = 395 | Back alignment and structure |
|
| >pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3 Length = 395 | Back alignment and structure |
|
| >pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of Djvlgb, A Pranarian Vasa-Like Rna Helicase Length = 253 | Back alignment and structure |
|
| >pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I In Complex With Adp Length = 242 | Back alignment and structure |
|
| >pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human Dead-Box Rna Helicase Ddx5 (P68) Length = 253 | Back alignment and structure |
|
| >pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And Rna Length = 412 | Back alignment and structure |
|
| >pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An Atp-analogue And Rna Length = 424 | Back alignment and structure |
|
| >pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp Length = 445 | Back alignment and structure |
|
| >pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex With The Dead- Box Helicase Ddx19 Length = 479 | Back alignment and structure |
|
| >pdb|3LY5|A Chain A, Ddx18 Dead-Domain Length = 262 | Back alignment and structure |
|
| >pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex With Adp Length = 236 | Back alignment and structure |
|
| >pdb|2JGN|A Chain A, Ddx3 Helicase Domain Length = 185 | Back alignment and structure |
|
| >pdb|2YJT|D Chain D, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound To Regulator Of Ribonuclease Activity A (Rraa) Length = 170 | Back alignment and structure |
|
| >pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form Length = 207 | Back alignment and structure |
|
| >pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1 Length = 207 | Back alignment and structure |
|
| >pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The Bacillus Subtilis Yxin Protein Length = 163 | Back alignment and structure |
|
| >pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In Complex With Amp Length = 249 | Back alignment and structure |
|
| >pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex With An Edc3-Fdf Peptide Length = 193 | Back alignment and structure |
|
| >pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A Human Dead-Box Protein Length = 206 | Back alignment and structure |
|
| >pdb|1T5I|A Chain A, Crystal Structure Of The C-Terminal Domain Of Uap56 Length = 172 | Back alignment and structure |
|
| >pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation Initiation Factor 4a From Saccharomyces Cerevisiae-The Prototype Of The Dead Box Protein Family Length = 224 | Back alignment and structure |
|
| >pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain Length = 223 | Back alignment and structure |
|
| >pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain Length = 228 | Back alignment and structure |
|
| >pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation Initiation Factor 4a-2 Length = 237 | Back alignment and structure |
|
| >pdb|4DB2|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex Length = 257 | Back alignment and structure |
|
| >pdb|4DB4|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric Rna-Dna Duplex Length = 256 | Back alignment and structure |
|
| >pdb|4DB2|C Chain C, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex Length = 257 | Back alignment and structure |
|
| >pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain Length = 191 | Back alignment and structure |
|
| >pdb|2RB4|A Chain A, Crystal Structure Of The Helicase Domain Of Human Ddx25 Rna Helicase Length = 175 | Back alignment and structure |
|
| >pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic Initiation Factor 4a, Eif4a Length = 221 | Back alignment and structure |
|
| >pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p Length = 226 | Back alignment and structure |
|
| >pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast Eif4a Length = 165 | Back alignment and structure |
|
| >pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1 H337r And Ip6 Length = 188 | Back alignment and structure |
|
| >pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p Length = 187 | Back alignment and structure |
|
| >pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein Dbp5 Length = 189 | Back alignment and structure |
|
| >pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain Length = 219 | Back alignment and structure |
|
| >pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex With Adp Length = 230 | Back alignment and structure |
|
| >pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56 Length = 220 | Back alignment and structure |
|
| >pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In Complex With Adp Length = 245 | Back alignment and structure |
|
| >pdb|3DMQ|A Chain A, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT Recycles Rna Polymerase During Transcription Length = 968 | Back alignment and structure |
|
| >pdb|3I32|A Chain A, Dimeric Structure Of A Hera Helicase Fragment Including The C-Terminal Reca Domain, The Dimerization Domain, And The Rna Binding Domain Length = 300 | Back alignment and structure |
|
| >pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera Form 2, Complete Dimer, Symmetric Length = 212 | Back alignment and structure |
|
| >pdb|1D2M|A Chain A, Uvrb Protein Of Thermus Thermophilus Hb8; A Nucleotide Excision Repair Enzyme Length = 665 | Back alignment and structure |
|
| >pdb|1C4O|A Chain A, Crystal Structure Of The Dna Nucleotide Excision Repair Enzyme Uvrb From Thermus Thermophilus Length = 664 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} Length = 417 | Back alignment and structure |
|---|
Score = 227 bits (582), Expect = 4e-72
Identities = 98/298 (32%), Positives = 156/298 (52%), Gaps = 15/298 (5%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P ++VL PTREL+ Q++ A+ S+ +R R +V GG + Q L ++V TPGR
Sbjct: 102 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGR 161
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVS 137
++ +E G + KYLVLDEAD M D GF P IR+ + + + P T++ S
Sbjct: 162 LVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIV----EQDTMPPKGVRHTMMFS 217
Query: 138 ATMTKAVQKLVDEECQGIAHL---RTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
AT K +Q L + L R + + I + + S+ K LL +L +
Sbjct: 218 ATFPKEIQMLARDFLDEYIFLAVGRVGSTSENI---TQKVVWVEESD-KRSFLLDLLN-A 272
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
K + +VF T + +++ FL + + HG+ ++R E L++F++ G P L
Sbjct: 273 TGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS--GKSPIL 330
Query: 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLA 311
V T +AARGLD+ +V HVI FD P + +Y+HR GRT R+G G TS ++++ +
Sbjct: 331 VATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINIT 388
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} Length = 434 | Back alignment and structure |
|---|
Score = 226 bits (579), Expect = 2e-71
Identities = 90/301 (29%), Positives = 154/301 (51%), Gaps = 22/301 (7%)
Query: 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPG 76
RP+ V++ PTREL+ Q+F A+ + + + +V GG R Q + + +V+ TPG
Sbjct: 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPG 188
Query: 77 RILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLV 136
R+L ++ + + D +++VLDEAD M D GF D+R+ + + R QT++
Sbjct: 189 RLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEH------QTLMF 242
Query: 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHD----FIKLSGSENKLEALLQVLE 192
SAT + +Q++ E + + + A D +++ K L+++L
Sbjct: 243 SATFPEEIQRMAGEFLKNYVFVAIG----IVGGACSDVKQTIYEVNKYA-KRSKLIEILS 297
Query: 193 PSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252
+ + +VF T + + FL+E + T + HG+ +R + L FKN G
Sbjct: 298 ---EQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKN--GSMK 352
Query: 253 TLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLV-AKKDVLL 310
L+ T +A+RGLD+ ++ HVI +D P DY+HR GRT R+G G+ TS +KD +
Sbjct: 353 VLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAI 412
Query: 311 A 311
A
Sbjct: 413 A 413
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A Length = 400 | Back alignment and structure |
|---|
Score = 223 bits (570), Expect = 2e-70
Identities = 88/319 (27%), Positives = 142/319 (44%), Gaps = 35/319 (10%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
K + +A+++ PTREL+ Q +V +++ H + +GG LR LN + ++VG
Sbjct: 86 KLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVG 145
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQ 132
TPGR+L D ++DEAD M R F I + L L Q
Sbjct: 146 TPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTH---------Q 196
Query: 133 TVLVSATMTKAVQKLVDE---ECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEAL-- 187
++L SAT V++ + + + I + TL + + KL L
Sbjct: 197 SLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLK----GITQYYAFVEE-RQKLHCLNT 251
Query: 188 -LQVLEPSLSKGNKVMVFCNTLNSSRAVDHF---LNENQISTVNYHGEVPAQERVENLNK 243
L+ N+ ++FCN+ + V+ + + S H + QER + ++
Sbjct: 252 LFSKLQI-----NQAIIFCNS---TNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHE 303
Query: 244 FKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
F+ G TLVC+DL RG+D+ V+ VI FDFP + YLHR GR+ R G G +L
Sbjct: 304 FRQ--GKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINL 361
Query: 303 VAKKDVLLADRIEEAIRKN 321
+ D +IE+ +
Sbjct: 362 INWNDRFNLYKIEQELGTE 380
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* Length = 563 | Back alignment and structure |
|---|
Score = 227 bits (580), Expect = 2e-70
Identities = 83/327 (25%), Positives = 147/327 (44%), Gaps = 24/327 (7%)
Query: 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHA----RFRSTMVSGGGRLRPQEDSLN-NP 67
+AV++ PTR+L+ Q+ K I ++ + GG R + +N
Sbjct: 142 DSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLR 201
Query: 68 IDMVVGTPGRILQHIEDG-NMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRAS 124
++V+ TPGR++ +E N + + Y VLDEAD + + GF D+ + KN S
Sbjct: 202 PNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKS 261
Query: 125 KPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASA----RHDFIKLSGS 180
N + T+L SAT+ VQKL + L T+ K A +
Sbjct: 262 ADNIK---TLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF 318
Query: 181 ENKLEALLQVLEPSLSKGN---KVMVFCNTLNSSRAVDHFLNENQ---ISTVNYHGEVPA 234
N + A ++ ++ + + + K ++F T+ + + L + + +HG++
Sbjct: 319 ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQ 378
Query: 235 QERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARM 293
+R + +FK ++ LVCTD+ ARG+D +V V+ P +Y+HR GRTAR
Sbjct: 379 NKRTSLVKRFKKDESGI--LVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARS 436
Query: 294 GAKGKVTSLVAKKDVLLADRIEEAIRK 320
G +G + K ++ +E+A
Sbjct: 437 GKEGSSVLFICKDELPFVRELEDAKNI 463
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A Length = 410 | Back alignment and structure |
|---|
Score = 222 bits (567), Expect = 6e-70
Identities = 88/325 (27%), Positives = 145/325 (44%), Gaps = 47/325 (14%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ R +A++L PTREL+ Q+ + ++ + + GG + L+ +V G
Sbjct: 102 QVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAG 161
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQ 132
TPGR+ I ++ IK LVLDEAD M ++GF I L Q
Sbjct: 162 TPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT---------Q 212
Query: 133 TVLVSATMTKAVQKLVDEECQGIAHLR----------TSTLHKKIASARHDFIKLSGSEN 182
VL+SAT+ + ++ ++ + TL + I + F+ + E
Sbjct: 213 VVLISATLPHEILEMTNK------FMTDPIRILVKRDELTL-EGI---KQFFVAVEREEW 262
Query: 183 KLEAL---LQVLEPSLSKGNKVMVFCNTLNSSRAVD---HFLNENQISTVNYHGEVPAQE 236
K + L L + + ++FCNT R VD + E + + HG++P +E
Sbjct: 263 KFDTLCDLYDTLTITQA-----VIFCNT---KRKVDWLTEKMREANFTVSSMHGDMPQKE 314
Query: 237 RVENLNKFKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGA 295
R + +F++ G L+ TD+ ARGLD+ V +I +D P N Y+HR GR+ R G
Sbjct: 315 RESIMKEFRS--GASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGR 372
Query: 296 KGKVTSLVAKKDVLLADRIEEAIRK 320
KG + V D+ + IE+
Sbjct: 373 KGVAINFVKNDDIRILRDIEQYYST 397
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} Length = 579 | Back alignment and structure |
|---|
Score = 222 bits (568), Expect = 2e-68
Identities = 82/327 (25%), Positives = 147/327 (44%), Gaps = 24/327 (7%)
Query: 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHA----RFRSTMVSGGGRLRPQEDSLN-NP 67
+AV++ PTR+L+ Q+ K I ++ + GG R + +N
Sbjct: 91 DSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLR 150
Query: 68 IDMVVGTPGRILQHIEDGNM-VYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRAS 124
++V+ TPGR++ +E + + + Y VLDEAD + + GF D+ + KN S
Sbjct: 151 PNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKS 210
Query: 125 KPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASA----RHDFIKLSGS 180
N +T+L SAT+ VQKL + L T+ K A +
Sbjct: 211 ADN---IKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKF 267
Query: 181 ENKLEALLQVLEPSLSKGN---KVMVFCNTLNSSRAVDHFLNENQ---ISTVNYHGEVPA 234
N + A ++ ++ + + + K ++F T+ + + L + + +HG++
Sbjct: 268 ANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQ 327
Query: 235 QERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARM 293
+R + +FK ++ LVCTD+ ARG+D +V V+ P +Y+HR GRTAR
Sbjct: 328 NKRTSLVKRFKKDESGI--LVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARS 385
Query: 294 GAKGKVTSLVAKKDVLLADRIEEAIRK 320
G +G + K ++ +E+A
Sbjct: 386 GKEGSSVLFICKDELPFVRELEDAKNI 412
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* Length = 394 | Back alignment and structure |
|---|
Score = 217 bits (556), Expect = 2e-68
Identities = 90/325 (27%), Positives = 145/325 (44%), Gaps = 48/325 (14%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ P+A++L PTREL+ Q+ +V +++ H + GG + L + +VVG
Sbjct: 86 SVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDA-QIVVG 144
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQ 132
TPGR+ +I+ IK +LDEAD M GF I + L Q
Sbjct: 145 TPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT---------Q 195
Query: 133 TVLVSATMTKAVQKLVDEECQGIAHLR----------TSTLHKKIASARHDFIKLSGSEN 182
VL+SATM V ++ + +R TL + I + ++ + E
Sbjct: 196 VVLLSATMPNDVLEVTTK------FMRNPVRILVKKDELTL-EGI---KQFYVNVEEEEY 245
Query: 183 KLEAL---LQVLEPSLSKGNKVMVFCNTLNSSRAVD---HFLNENQISTVNYHGEVPAQE 236
K E L + + + ++FCNT R V+ L ++ + + ++P QE
Sbjct: 246 KYECLTDLYDSISVTQA-----VIFCNT---RRKVEELTTKLRNDKFTVSAIYSDLPQQE 297
Query: 237 RVENLNKFKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGA 295
R + +F++ G L+ TDL ARG+D+ V VI +D P N +Y+HR GR R G
Sbjct: 298 RDTIMKEFRS--GSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGR 355
Query: 296 KGKVTSLVAKKDVLLADRIEEAIRK 320
KG + V +DV +E+
Sbjct: 356 KGVAINFVTNEDVGAMRELEKFYST 380
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} Length = 414 | Back alignment and structure |
|---|
Score = 215 bits (551), Expect = 2e-67
Identities = 93/326 (28%), Positives = 144/326 (44%), Gaps = 48/326 (14%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL-NNPIDMVV 72
+ +A+VL PTREL++Q+ +V ++ + GG +R + L ++V
Sbjct: 105 DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIV 164
Query: 73 GTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGF 131
GTPGR+ + + IK VLDEAD M RGF I L N
Sbjct: 165 GTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNT--------- 215
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLR----------TSTLHKKIASARHDFIKLSGSE 181
Q VL+SATM V ++ + +R TL + I R +I + E
Sbjct: 216 QVVLLSATMPSDVLEVTKK------FMRDPIRILVKKEELTL-EGI---RQFYINVEREE 265
Query: 182 NKLEAL---LQVLEPSLSKGNKVMVFCNTLNSSRAVD---HFLNENQISTVNYHGEVPAQ 235
KL+ L + L + + ++F NT R VD ++ + HG++ +
Sbjct: 266 WKLDTLCDLYETLTITQA-----VIFINT---RRKVDWLTEKMHARDFTVSAMHGDMDQK 317
Query: 236 ERVENLNKFKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMG 294
ER + +F++ G L+ TDL ARG+D+ V VI +D P N +Y+HR GR R G
Sbjct: 318 ERDVIMREFRS--GSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFG 375
Query: 295 AKGKVTSLVAKKDVLLADRIEEAIRK 320
KG ++V ++D IE
Sbjct: 376 RKGVAINMVTEEDKRTLRDIETFYNT 401
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} Length = 337 | Back alignment and structure |
|---|
Score = 212 bits (542), Expect = 6e-67
Identities = 85/307 (27%), Positives = 145/307 (47%), Gaps = 27/307 (8%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
+++V+ PTREL+ QV + I + + V GG + Q + + N D+VV TP
Sbjct: 55 LGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRNA-DIVVATP 113
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTV 134
GR+L G + + +++DEAD MF+ GF DI+ L + T
Sbjct: 114 GRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRK---------ITG 164
Query: 135 LVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPS 194
L SAT+ + ++K+V + + + H F+ + + + +Q L
Sbjct: 165 LFSATIPEEIRKVVKDFITNYEEIEACIGLANV---EHKFVHVK---DDWRSKVQALR-- 216
Query: 195 LSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254
+K V+VF T V L + + G++P R N++ F+ G+ L
Sbjct: 217 ENKDKGVIVFVRT---RNRVAK-LVRLFDNAIELRGDLPQSVRNRNIDAFRE--GEYDML 270
Query: 255 VCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313
+ TD+A+RGLD+ V+ VI FD P + Y+HR GRT RMG KG+ + + + L +
Sbjct: 271 ITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFILNEYWLEKE- 329
Query: 314 IEEAIRK 320
+++ +K
Sbjct: 330 VKKVSQK 336
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 Length = 367 | Back alignment and structure |
|---|
Score = 206 bits (527), Expect = 2e-64
Identities = 89/310 (28%), Positives = 155/310 (50%), Gaps = 28/310 (9%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
A++L PTREL+ QV +S+ + + + GG + PQ +L N ++VVGTP
Sbjct: 73 NGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNA-NIVVGTP 131
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPNGQGFQT 133
GRIL HI G + ++KY +LDEAD M + GF D+ K L K++ +
Sbjct: 132 GRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACN-KDK---------RI 181
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVL-- 191
+L SATM + + L + + ++ A+ +++++ +E + EAL ++L
Sbjct: 182 LLFSATMPREILNLAKKYMGDYSFIKAKI----NANIEQSYVEVNENE-RFEALCRLLKN 236
Query: 192 EPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251
+ +VFC T ++ + L + HG++ +R + + FK
Sbjct: 237 KEFYG-----LVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQ--KKI 289
Query: 252 PTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310
L+ TD+ +RG+D++ ++ VI + P N Y+HR GRT R G KGK S++ +++
Sbjct: 290 RILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKK 349
Query: 311 ADRIEEAIRK 320
IE A++
Sbjct: 350 LRYIERAMKL 359
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A Length = 391 | Back alignment and structure |
|---|
Score = 201 bits (513), Expect = 5e-62
Identities = 83/322 (25%), Positives = 146/322 (45%), Gaps = 35/322 (10%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVS-GGGRLRPQEDSLNNPID-MV 71
+ +V+C TREL+ Q+ + + S + V GG ++ E+ L +V
Sbjct: 73 VTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 132
Query: 72 VGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDR-GFGPDIRKFLVPL-KNRASKPNGQ 129
VGTPGRIL + ++ IK+ +LDE D M ++ D+++ +
Sbjct: 133 VGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEK------- 185
Query: 130 GFQTVLVSATMTKAVQKLVDEECQ-----GIAHLRTSTLHKKIASARHDFIKLSGSENKL 184
Q ++ SAT++K ++ + + Q + TLH + ++KL +E K
Sbjct: 186 --QVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLH----GLQQYYVKLKDNE-KN 238
Query: 185 EAL---LQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENL 241
L L VLE N+V++F ++ A+ L E + H +P +ER+
Sbjct: 239 RKLFDLLDVLEF-----NQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRY 293
Query: 242 NKFKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVT 300
+FK+ LV T+L RG+D++ V+ +D P +S YLHR R R G KG
Sbjct: 294 QQFKD--FQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAI 351
Query: 301 SLVA-KKDVLLADRIEEAIRKN 321
+ V+ + D + + +++ N
Sbjct: 352 TFVSDENDAKILNDVQDRFEVN 373
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* Length = 395 | Back alignment and structure |
|---|
Score = 183 bits (468), Expect = 3e-55
Identities = 80/328 (24%), Positives = 132/328 (40%), Gaps = 45/328 (13%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ P+A+ L P+REL+ Q V + + + S ++ + +N + +VG
Sbjct: 72 EDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEK--NKQINAQV--IVG 127
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFD-RGFGPDIRKFLVPL-KNRASKPNGQGF 131
TPG +L + M IK VLDEAD M D +G G + L K+
Sbjct: 128 TPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDT--------- 178
Query: 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASA---RHDFIKLSGSENKLEAL- 187
Q VL SAT AV++ + L L + + ++ +K + L
Sbjct: 179 QLVLFSATFADAVRQYAKKIVPNANTLE---LQTNEVNVDAIKQLYMDCKNEADKFDVLT 235
Query: 188 --LQVLEPSLSKGNKVMVFCNTLNSSRAVD---HFLNENQISTVNYHGEVPAQERVENLN 242
++ S ++F T + + L HG++ QER ++
Sbjct: 236 ELYGLMTIGSS-----IIFVAT---KKTANVLYGKLKSEGHEVSILHGDLQTQERDRLID 287
Query: 243 KFKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSID------YLHRTGRTARMGA 295
F+ +G L+ T++ ARG+D+ V V+ +D P + Y+HR GRT R G
Sbjct: 288 DFR--EGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGR 345
Query: 296 KGKVTSLVA-KKDVLLADRIEEAIRKNE 322
KG S V K + I++ E
Sbjct: 346 KGVAISFVHDKNSFNILSAIQKYFGDIE 373
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* Length = 414 | Back alignment and structure |
|---|
Score = 182 bits (463), Expect = 2e-54
Identities = 43/340 (12%), Positives = 111/340 (32%), Gaps = 60/340 (17%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMV 71
+ ++ ++ PT L +Q + ++ + + + +E + ++
Sbjct: 63 KGKKSALVFPTVTLVKQTLERLQKLADE-KVKIFGFYSSMKKEEKEKFEKSFEEDDYHIL 121
Query: 72 VGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQG 130
V + + ++ + ++ +D+ D + D +V + +
Sbjct: 122 VFSTQFVSKNR--EKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEI-------- 171
Query: 131 FQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARH------------------ 172
S + + GI + ++T +
Sbjct: 172 -IRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSVARN 230
Query: 173 --DFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHG 230
S S+ KL LL++ + +++F T + + +L + +
Sbjct: 231 ITHVRISSRSKEKLVELLEIF------RDGILIFAQTEEEGKELYEYLKRFKFNVGETWS 284
Query: 231 EVPAQERVENLNKFKNEDGDCPTLVCTD----LAARGLDLD--VDHVIMFDFP--LNSID 282
E +N FK G L+ RG+DL + +VI + P +
Sbjct: 285 -----EFEKNFEDFKV--GKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYT 337
Query: 283 YLHRTGRTARMGAKG--KVTSLVAKKDVLLADRIEEAIRK 320
Y+ +GR++R+ K S++ ++D + + ++ +
Sbjct: 338 YIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLLL 377
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B Length = 412 | Back alignment and structure |
|---|
Score = 181 bits (461), Expect = 4e-54
Identities = 81/329 (24%), Positives = 136/329 (41%), Gaps = 48/329 (14%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSIS-HHARFRSTMVSGGGRLRPQEDSLNNPIDMVV 72
+ P+ + L PT EL+ Q +V + + + + G +L +V+
Sbjct: 92 ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVI 148
Query: 73 GTPGRILQHIE-DGNMVYGDIKYLVLDEADTMFD-RGFGPDIRKFLVPL-KNRASKPNGQ 129
GTPG +L + IK VLDEAD M +G + L +N
Sbjct: 149 GTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNC------- 201
Query: 130 GFQTVLVSATMTKAVQKLVDEECQGIAHLR----TSTLHKKIASARHDFIKLSGSENKLE 185
Q +L SAT +V K + ++ TL I + ++ S + K +
Sbjct: 202 --QMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETL-DTI---KQYYVLCSSRDEKFQ 255
Query: 186 AL---LQVLEPSLSKGNKVMVFCNTLNSSRAVD---HFLNENQISTVNYHGEVPAQERVE 239
AL + + + M+FC+T + L++ GE+ ++R
Sbjct: 256 ALCNLYGAITIAQA-----MIFCHT---RKTASWLAAELSKEGHQVALLSGEMMVEQRAA 307
Query: 240 NLNKFKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSID------YLHRTGRTAR 292
+ +F+ G LV T++ ARG+D++ V VI FD P++ YLHR GRT R
Sbjct: 308 VIERFRE--GKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGR 365
Query: 293 MGAKGKVTSLVA-KKDVLLADRIEEAIRK 320
G +G ++V K + + +RI+E K
Sbjct: 366 FGKRGLAVNMVDSKHSMNILNRIQEHFNK 394
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} Length = 479 | Back alignment and structure |
|---|
Score = 177 bits (452), Expect = 3e-52
Identities = 81/325 (24%), Positives = 136/325 (41%), Gaps = 40/325 (12%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
+ P+ + L PT EL+ Q +V + + + G E +V+G
Sbjct: 159 ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGN--KLERGQKISEQIVIG 216
Query: 74 TPGRILQHIE-DGNMVYGDIKYLVLDEADTMFD-RGFGPDIRKFLVPL-KNRASKPNGQG 130
TPG +L + IK VLDEAD M +G + L +N
Sbjct: 217 TPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNC-------- 268
Query: 131 FQTVLVSATMTKAVQKLVDEECQGIAHLR----TSTLHKKIASARHDFIKLSGSENKLEA 186
Q +L SAT +V K + ++ TL I + ++ S + K +A
Sbjct: 269 -QMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETL-DTI---KQYYVLCSSRDEKFQA 323
Query: 187 L---LQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNK 243
L + + + M+FC+T ++ + L++ GE+ ++R + +
Sbjct: 324 LCNLYGAITIAQA-----MIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIER 378
Query: 244 FKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSID------YLHRTGRTARMGAK 296
F+ G LV T++ ARG+D++ V VI FD P++ YLHR GRT R G +
Sbjct: 379 FRE--GKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKR 436
Query: 297 GKVTSLVA-KKDVLLADRIEEAIRK 320
G ++V K + + +RI+E K
Sbjct: 437 GLAVNMVDSKHSMNILNRIQEHFNK 461
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} Length = 236 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 3e-40
Identities = 46/139 (33%), Positives = 76/139 (54%), Gaps = 12/139 (8%)
Query: 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVV 72
+++ PTREL+ Q F V + + + F + ++ GG L+ + + +NN +++V
Sbjct: 93 TSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNI-NILV 151
Query: 73 GTPGRILQHIEDG-NMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQG 130
TPGR+LQH+++ + D++ LVLDEAD + D GF + + L K R
Sbjct: 152 CTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKR-------- 203
Query: 131 FQTVLVSATMTKAVQKLVD 149
QT+L SAT TK+V+ L
Sbjct: 204 -QTLLFSATQTKSVKDLAR 221
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} Length = 249 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 2e-39
Identities = 47/140 (33%), Positives = 75/140 (53%), Gaps = 11/140 (7%)
Query: 12 LMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMV 71
L P+R A+VL PTREL+ Q+ +++ +S ++ GG Q +L ++
Sbjct: 106 LETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHII 165
Query: 72 VGTPGRILQHIEDGNMV-YGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQ 129
+ TPGR++ H+E+ +KYLV+DEAD + + F ++ K L + ++R
Sbjct: 166 IATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDR------- 218
Query: 130 GFQTVLVSATMTKAVQKLVD 149
+T L SATMTK VQKL
Sbjct: 219 --KTFLFSATMTKKVQKLQR 236
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 Length = 253 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 3e-39
Identities = 49/138 (35%), Positives = 70/138 (50%), Gaps = 14/138 (10%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P+ ++L PTREL+ Q+ ++ S + RS +V GG Q + ++V TPGR
Sbjct: 101 PKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGR 160
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL-----VPLKNRASKPNGQGFQ 132
++ IE + KY+VLDEAD M D GF P IRK + NR Q
Sbjct: 161 LVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINR---------Q 211
Query: 133 TVLVSATMTKAVQKLVDE 150
T++ SAT K +QKL +
Sbjct: 212 TLMFSATFPKEIQKLAAD 229
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 4e-39
Identities = 47/145 (32%), Positives = 78/145 (53%), Gaps = 12/145 (8%)
Query: 6 EAMLGVLMKPRRP-RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL 64
E ++ + PR ++L PTREL+ Q F V K + H ++ GG + L
Sbjct: 114 ELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL 173
Query: 65 NNPIDMVVGTPGRILQHIED-GNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNR 122
N I+++V TPGR+L H+++ +Y +++ LV+DEAD + D GF ++++ + L R
Sbjct: 174 GNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRR 233
Query: 123 ASKPNGQGFQTVLVSATMTKAVQKL 147
QT+L SAT T+ V+ L
Sbjct: 234 ---------QTMLFSATQTRKVEDL 249
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} Length = 245 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 2e-36
Identities = 34/148 (22%), Positives = 64/148 (43%), Gaps = 15/148 (10%)
Query: 8 MLGVLMKPRR--PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGG-RLRPQEDSL 64
+L L +P RA+++ PTREL+ Q+ R IS FR M+ +
Sbjct: 87 ILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKS 146
Query: 65 NNPIDMVVGTPGRILQHIEDGNMVY--GDIKYLVLDEADTMFDR---GFGPDIRKFLVPL 119
+ D++V TP R++ ++ +++LV+DE+D +F+ GF + +
Sbjct: 147 SKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLAC 206
Query: 120 KNRASKPNGQGFQTVLVSATMTKAVQKL 147
+ + + SAT V++
Sbjct: 207 TS-------HKVRRAMFSATFAYDVEQW 227
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A Length = 207 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 2e-35
Identities = 48/139 (34%), Positives = 71/139 (51%), Gaps = 16/139 (11%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARF-RSTMVSGGGRLRPQEDSLNNPIDMVV 72
+ R+PRA+VL PTREL+ QV A ++ A + V GG Q+++L D VV
Sbjct: 69 RGRKPRALVLTPTRELALQV---ASELTAVAPHLKVVAVYGGTGYGKQKEALLRGADAVV 125
Query: 73 GTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPNGQG 130
TPGR L ++ G + ++ VLDEAD M GF ++ L P +R
Sbjct: 126 ATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMGFEEEVEALLSATP-PSR-------- 176
Query: 131 FQTVLVSATMTKAVQKLVD 149
QT+L SAT+ ++L +
Sbjct: 177 -QTLLFSATLPSWAKRLAE 194
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} Length = 228 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 5e-35
Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 13/149 (8%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
H ++ + P +VL PTREL+ V S+ +S + GG Q
Sbjct: 78 GFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSY-KGLKSICIYGGRNRNGQ 136
Query: 61 EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VP 118
+ ++ +D+++ TPGR+ + ++ I YLV+DEAD M D F P IRK L V
Sbjct: 137 IEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVR 196
Query: 119 LKNRASKPNGQGFQTVLVSATMTKAVQKL 147
+R QTV+ SAT V++L
Sbjct: 197 -PDR---------QTVMTSATWPDTVRQL 215
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} Length = 242 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 9e-35
Identities = 51/131 (38%), Positives = 72/131 (54%), Gaps = 10/131 (7%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGR 77
P +VL PTREL++QV +VA R +ST + GG PQ L +++ + TPGR
Sbjct: 103 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 162
Query: 78 ILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLK-NRASKPNGQGFQTVLV 136
++ +E G YLVLDEAD M D GF P IRK + ++ +R QT++
Sbjct: 163 LIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDR---------QTLMW 213
Query: 137 SATMTKAVQKL 147
SAT K V++L
Sbjct: 214 SATWPKEVRQL 224
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} Length = 185 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 1e-33
Identities = 45/132 (34%), Positives = 75/132 (56%), Gaps = 4/132 (3%)
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
+K LL +L + K + +VF T + +++ FL + + HG+ ++R E
Sbjct: 30 SDKRSFLLDLLN-ATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEA 88
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKV 299
L++F++ G P LV T +AARGLD+ +V HVI FD P + +Y+HR GRT R+G G
Sbjct: 89 LHQFRS--GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLA 146
Query: 300 TSLVAKKDVLLA 311
TS ++++ +
Sbjct: 147 TSFFNERNINIT 158
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 Length = 219 | Back alignment and structure |
|---|
Score = 121 bits (307), Expect = 2e-33
Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 16/140 (11%)
Query: 14 KPRRPRAVVLCPTRELSEQV----FRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPID 69
+ +AV+ PTREL+ Q+ ++ K + + GG + + LN
Sbjct: 69 ERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPH 128
Query: 70 MVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPN 127
+V+GTPGRI I + + LV+DEAD M D GF D+ + +P K+
Sbjct: 129 IVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMP-KDL----- 182
Query: 128 GQGFQTVLVSATMTKAVQKL 147
Q ++ SAT+ + ++
Sbjct: 183 ----QMLVFSATIPEKLKPF 198
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A Length = 224 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 2e-33
Identities = 42/135 (31%), Positives = 64/135 (47%), Gaps = 11/135 (8%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
+ P+A++L PTREL+ Q+ +V +++ H + GG + L + +VVGTP
Sbjct: 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDA-QIVVGTP 139
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGFQTV 134
GR+ +I+ IK +LDEAD M GF I + L Q V
Sbjct: 140 GRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT---------QVV 190
Query: 135 LVSATMTKAVQKLVD 149
L+SATM V ++
Sbjct: 191 LLSATMPNDVLEVTT 205
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 Length = 206 | Back alignment and structure |
|---|
Score = 120 bits (303), Expect = 5e-33
Identities = 45/139 (32%), Positives = 72/139 (51%), Gaps = 13/139 (9%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSIS-HHARFRSTMVSGGGRLRPQEDSLNNPIDMVV 72
K +A+V+ PTREL+ QV ++ +S H + +GG LR L++ + +V+
Sbjct: 68 KKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVI 127
Query: 73 GTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFL--VPLKNRASKPNGQG 130
TPGRIL I+ G ++ +VLDEAD + + F + + +P KNR
Sbjct: 128 ATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLP-KNR-------- 178
Query: 131 FQTVLVSATMTKAVQKLVD 149
Q +L SAT +VQK ++
Sbjct: 179 -QILLYSATFPLSVQKFMN 196
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* Length = 237 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 1e-32
Identities = 43/138 (31%), Positives = 65/138 (47%), Gaps = 11/138 (7%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL-NNPIDMVV 72
+ + +A+VL PTREL++Q+ +V ++ + GG +R + L +VV
Sbjct: 95 EFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVV 154
Query: 73 GTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQGF 131
GTPGR+ + + IK VLDEAD M RGF I + L +
Sbjct: 155 GTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSI--------- 205
Query: 132 QTVLVSATMTKAVQKLVD 149
Q VL+SATM V ++
Sbjct: 206 QVVLLSATMPTDVLEVTK 223
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} Length = 191 | Back alignment and structure |
|---|
Score = 116 bits (294), Expect = 5e-32
Identities = 38/124 (30%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
E K+ LL+ L+ V++F A+ +L + V HG +ER +
Sbjct: 40 EAKMVYLLECLQ---KTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKA 96
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKV 299
+ F+ G LV TD+A++GLD + HVI +D P +Y+HR GRT G G
Sbjct: 97 IEAFRE--GKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIA 154
Query: 300 TSLV 303
T+ +
Sbjct: 155 TTFI 158
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} Length = 170 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 4e-31
Identities = 51/157 (32%), Positives = 76/157 (48%), Gaps = 8/157 (5%)
Query: 165 KKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQIS 224
KKI + + E+K L+ +L+ + + +VF + ++L E I+
Sbjct: 2 KKI---HQWYYRADDLEHKTALLVHLLK--QPEATRSIVFVRKRERVHELANWLREAGIN 56
Query: 225 TVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDY 283
GE+ +R E + + +G LV TD+AARG+D+ V HV FD P + Y
Sbjct: 57 NCYLEGEMVQGKRNEAIKRLT--EGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTY 114
Query: 284 LHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRK 320
LHR GRTAR G KG SLV D LL ++ I +
Sbjct: 115 LHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEE 151
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* Length = 230 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 2e-30
Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 13/139 (9%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVS-GGGRLRPQEDSLNNPIDMVV 72
+ + ++L PTRE++ Q+ V +I V GG L + L + V
Sbjct: 89 ENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKC-HIAV 147
Query: 73 GTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRG-FGPDIRKFLVPL-KNRASKPNGQG 130
G+PGRI Q IE + G I+ +LDEAD + + G F I L ++
Sbjct: 148 GSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASK-------- 199
Query: 131 FQTVLVSATMTKAVQKLVD 149
Q + VSAT + + +
Sbjct: 200 -QMLAVSATYPEFLANALT 217
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} Length = 163 | Back alignment and structure |
|---|
Score = 109 bits (276), Expect = 1e-29
Identities = 50/144 (34%), Positives = 71/144 (49%), Gaps = 11/144 (7%)
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDH---FLNENQISTVNYHGEVPAQER 237
ENK L VL + ++FC T V+ L++ HG + ++R
Sbjct: 20 ENKFSLLKDVLM--TENPDSCIIFCRT---KEHVNQLTDELDDLGYPCDKIHGGMIQEDR 74
Query: 238 VENLNKFKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAK 296
+ +N+FK G+ LV TD+AARG+D++ + VI +D PL Y+HRTGRT R G K
Sbjct: 75 FDVMNEFKR--GEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNK 132
Query: 297 GKVTSLVAKKDVLLADRIEEAIRK 320
GK S V + IEE I
Sbjct: 133 GKAISFVTAFEKRFLADIEEYIGF 156
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 Length = 220 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 2e-29
Identities = 36/139 (25%), Positives = 68/139 (48%), Gaps = 15/139 (10%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSIS-HHARFRSTMVSGGGRLRPQEDSL-NNPIDMV 71
+ +V+C TREL+ Q+ + + S + + + GG ++ E+ L N +V
Sbjct: 79 VTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIV 138
Query: 72 VGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDR-GFGPDIRKFL--VPLKNRASKPNG 128
VGTPGRIL + ++ IK+ +LDE D M ++ D+++ P +
Sbjct: 139 VGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP-HEK------ 191
Query: 129 QGFQTVLVSATMTKAVQKL 147
Q ++ SAT++K ++ +
Sbjct: 192 ---QVMMFSATLSKEIRPV 207
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 Length = 172 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 2e-28
Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 12/146 (8%)
Query: 181 ENKLEAL---LQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQER 237
K L L VLE N+V++F ++ A+ L E + H +P +ER
Sbjct: 16 NEKNRKLFDLLDVLEF-----NQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEER 70
Query: 238 VENLNKFKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAK 296
+ +FK+ LV T+L RG+D++ V+ +D P +S YLHR R R G K
Sbjct: 71 LSRYQQFKD--FQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTK 128
Query: 297 GKVTSLVA-KKDVLLADRIEEAIRKN 321
G + V+ + D + + +++ N
Sbjct: 129 GLAITFVSDENDAKILNDVQDRFEVN 154
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 Length = 165 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 2e-27
Identities = 42/147 (28%), Positives = 71/147 (48%), Gaps = 11/147 (7%)
Query: 174 FIKLSGSENKLEAL---LQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHG 230
++ + E K E L + + + ++FCNT + L ++ + +
Sbjct: 8 YVNVEEEEYKYECLTDLYDSISVTQA-----VIFCNTRRKVEELTTKLRNDKFTVSAIYS 62
Query: 231 EVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGR 289
++P QER + +F++ G L+ TDL ARG+D+ V VI +D P N +Y+HR GR
Sbjct: 63 DLPQQERDTIMKEFRS--GSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGR 120
Query: 290 TARMGAKGKVTSLVAKKDVLLADRIEE 316
R G KG + V +DV +E+
Sbjct: 121 GGRFGRKGVAINFVTNEDVGAMRELEK 147
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} Length = 175 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 1e-26
Identities = 34/153 (22%), Positives = 73/153 (47%), Gaps = 17/153 (11%)
Query: 174 FIKLSGSENKLEAL---LQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHG 230
++ ++K +AL + + ++FC T +++ + + ++ G
Sbjct: 12 YVLCEHRKDKYQALCNIYGSITIGQA-----IIFCQTRRNAKWLTVEMIQDGHQVSLLSG 66
Query: 231 EVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSID------Y 283
E+ ++R + +F++ G L+ T++ ARG+D+ V V+ FD P+ + Y
Sbjct: 67 ELTVEQRASIIQRFRD--GKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETY 124
Query: 284 LHRTGRTARMGAKGKVTSLVAKKDVLLADRIEE 316
LHR GRT R G KG +++ ++ +I++
Sbjct: 125 LHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQD 157
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A Length = 212 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 2e-25
Identities = 43/154 (27%), Positives = 71/154 (46%), Gaps = 6/154 (3%)
Query: 168 ASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVN 227
+ + + +LE L +L ++ ++ MVF T + + L
Sbjct: 4 VTYEEEAVPAPVRG-RLEVLSDLLY--VASPDRAMVFTRTKAETEEIAQGLLRLGHPAQA 60
Query: 228 YHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHR 286
HG++ ER L F+ G+ LV TD+AARGLD+ VD V+ + P + Y HR
Sbjct: 61 LHGDLSQGERERVLGAFRQ--GEVRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHR 118
Query: 287 TGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRK 320
+GRT R G G+V L ++ + +E A+ +
Sbjct: 119 SGRTGRAGRGGRVVLLYGPRERRDVEALERAVGR 152
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} Length = 300 | Back alignment and structure |
|---|
Score = 99.8 bits (249), Expect = 2e-24
Identities = 35/136 (25%), Positives = 54/136 (39%), Gaps = 16/136 (11%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSIS-HHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
+ P+ + L PT EL+ Q +V + + + + G +L +V+GT
Sbjct: 161 KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLE---RGQKISEQIVIGT 217
Query: 75 PGRILQHIE-DGNMVYGDIKYLVLDEADTMFD-RGFGPDIRKFLVPL-KNRASKPNGQGF 131
PG +L + IK VLDEAD M +G + L +N
Sbjct: 218 PGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNC--------- 268
Query: 132 QTVLVSATMTKAVQKL 147
Q +L SAT +V K
Sbjct: 269 QMLLFSATFEDSVWKF 284
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} Length = 300 | Back alignment and structure |
|---|
Score = 98.3 bits (245), Expect = 5e-24
Identities = 42/151 (27%), Positives = 70/151 (46%), Gaps = 6/151 (3%)
Query: 171 RHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHG 230
+ + +LE L +L ++ ++ MVF T + + L HG
Sbjct: 4 EEEAVPAPVRG-RLEVLSDLLY--VASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHG 60
Query: 231 EVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGR 289
++ ER + F+ G+ LV TD+AARGLD+ VD V+ + P + Y HR+GR
Sbjct: 61 DMSQGERERVMGAFRQ--GEVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGR 118
Query: 290 TARMGAKGKVTSLVAKKDVLLADRIEEAIRK 320
T R G G+V L ++ + +E A+ +
Sbjct: 119 TGRAGRGGRVVLLYGPRERRDVEALERAVGR 149
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
Score = 83.3 bits (205), Expect = 6e-18
Identities = 47/243 (19%), Positives = 98/243 (40%), Gaps = 43/243 (17%)
Query: 94 YLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQ 153
L L A + + +R ++ L A + + + + M KA+ LV +
Sbjct: 279 ALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEI 338
Query: 154 GIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGN--KVMVFCNTLNSS 211
G+ K++ L +++ L + K++VF N ++
Sbjct: 339 GL------------------------DHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETA 374
Query: 212 RAVDHFLNENQISTVNYHGEVPA--------QERVENLNKFKNEDGDCPTLVCTDLAARG 263
+ + + L ++ I + G+ +E+ L++F G+ LV T + G
Sbjct: 375 KKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFAR--GEFNVLVATSVGEEG 432
Query: 264 LDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV-----LLADRIEEA 317
LD+ +VD V+ ++ ++I + R GRT R G+V L+AK + + E+
Sbjct: 433 LDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHM-PGRVIILMAKGTRDEAYYWSSRQKEKI 491
Query: 318 IRK 320
+++
Sbjct: 492 MQE 494
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 Length = 494 | Back alignment and structure |
|---|
Score = 53.6 bits (128), Expect = 3e-08
Identities = 24/156 (15%), Positives = 54/156 (34%), Gaps = 11/156 (7%)
Query: 12 LMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMV 71
L K + ++L PT+ L Q + + + + ++G + + ++
Sbjct: 48 LTKYGG-KVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWARA-KVI 105
Query: 72 VGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGF 131
V TP I + G + D+ +V DEA I +
Sbjct: 106 VATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKN--------P 157
Query: 132 QTVLVSATMTKAVQKLVDEECQ-GIAHLRTSTLHKK 166
+ ++A+ +K+++ GI H+ + +
Sbjct: 158 LVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSP 193
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} Length = 968 | Back alignment and structure |
|---|
Score = 69.7 bits (170), Expect = 2e-13
Identities = 33/155 (21%), Positives = 58/155 (37%), Gaps = 8/155 (5%)
Query: 167 IASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQ-IST 225
D + ++E L+ L + KV+V C ++ ++ L E + I
Sbjct: 474 YQEFEGDNATWWNFDPRVEWLMGYLTSH--RSQKVLVICAKAATALQLEQVLREREGIRA 531
Query: 226 VNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYL 284
+H + ER F ED L+C+++ + G + H++MFD P N
Sbjct: 532 AVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLE 591
Query: 285 HRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIR 319
R GR R+G + V L + +
Sbjct: 592 QRIGRLDRIGQAHDIQIHV----PYLEKTAQSVLV 622
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} Length = 555 | Back alignment and structure |
|---|
Score = 58.0 bits (139), Expect = 2e-09
Identities = 36/179 (20%), Positives = 62/179 (34%), Gaps = 18/179 (10%)
Query: 157 HLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGN--KVMVFCNTLNSSRAV 214
T +K+ S KL L VL+ K ++F T A+
Sbjct: 346 RELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDAL 405
Query: 215 DHFLNENQI------------STVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAAR 262
++ EN N + + L F+ GD L+ T +A
Sbjct: 406 KKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFR-ASGDNNILIATSVADE 464
Query: 263 GLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRK 320
G+D+ + + VI++++ N I + GR R K L + DV+ ++ K
Sbjct: 465 GIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKANMIKEK 521
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* Length = 696 | Back alignment and structure |
|---|
Score = 56.5 bits (135), Expect = 4e-09
Identities = 36/178 (20%), Positives = 65/178 (36%), Gaps = 18/178 (10%)
Query: 155 IAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEP--SLSKGNKVMVFCNTLNSSR 212
I T +K+ S KLE L +L+ L+ ++F T
Sbjct: 353 IEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVD 412
Query: 213 AVDHFLNENQI------------STVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLA 260
A+ +++ N N + + + L+ FK GD L+ T +A
Sbjct: 413 ALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKA-SGDHNILIATSVA 471
Query: 261 ARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317
G+D+ + VI++++ N I + GR R K L + V+ ++I
Sbjct: 472 DEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQINMY 527
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} Length = 936 | Back alignment and structure |
|---|
Score = 56.5 bits (135), Expect = 5e-09
Identities = 36/198 (18%), Positives = 71/198 (35%), Gaps = 22/198 (11%)
Query: 142 KAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSEN----KLEALLQVLEPSL-- 195
+ + G L K + I LS E KLE L+ +L+ +
Sbjct: 569 SYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRY 628
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQI------------STVNYHGEVPAQERVENLNK 243
+ + ++F T A+ + EN I + + + L+
Sbjct: 629 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDA 688
Query: 244 FKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSL 302
FK D L+ T +A G+D+ + V+++++ N + GR R A K +
Sbjct: 689 FKT-SKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILV 745
Query: 303 VAKKDVLLADRIEEAIRK 320
+K +V+ ++ +
Sbjct: 746 TSKTEVVENEKCNRYKEE 763
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* Length = 472 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 2e-08
Identities = 37/303 (12%), Positives = 85/303 (28%), Gaps = 53/303 (17%)
Query: 12 LMKPRRPRAVVLCPTRELSEQVFRVAK--SISHHARFRSTMVSGGG-------RLRPQED 62
+ +++ PT L+EQ + F + +
Sbjct: 128 AINELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYDSAYVNAE 187
Query: 63 SLNNPIDMVVG----------------------------TPGRILQHIEDGNMVYGDIKY 94
L N +++ T R E V G +
Sbjct: 188 KLGNRFMLLIFDEVHHLPAESYVQIAQMSIAPFRLGLTATFEREDGRHEILKEVVGGKVF 247
Query: 95 LVLDEADTMFDRGFG--PDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEEC 152
+ ++ I++ VPL + + + ++
Sbjct: 248 ELFPDS---LAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFN 304
Query: 153 QGIAHLRTSTLHKKIASARHDFIKL-SGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSS 211
+ + + A + ++ S+NK+ L ++LE + +K+++F
Sbjct: 305 KIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILE--RHRKDKIIIFTRHNELV 362
Query: 212 RAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDH 270
+ I +ER E L F+ G +V + + G+D+ D +
Sbjct: 363 YRISKVFLIPAI-----THRTSREEREEILEGFRT--GRFRAIVSSQVLDEGIDVPDANV 415
Query: 271 VIM 273
++
Sbjct: 416 GVI 418
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} Length = 510 | Back alignment and structure |
|---|
Score = 54.5 bits (130), Expect = 2e-08
Identities = 38/307 (12%), Positives = 92/307 (29%), Gaps = 12/307 (3%)
Query: 7 AMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNN 66
+ ++ + +++ PT L+ Q+ + + GG + +
Sbjct: 147 LLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDKYKNDAP 206
Query: 67 PIDMVVGTPGRILQHIEDG-NMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASK 125
+ T + + M+ D +L ++ + G + KF + R K
Sbjct: 207 VVVGTWQTVVKQPKEWFSQFGMMMNDECHLATGKSISSIISGLNNCMFKFGLSGSLRDGK 266
Query: 126 PNGQGFQTVLVSATMTKAVQKLVDE---ECQGIAHLRTSTLHKKIASARHDFI-----KL 177
N + + KL+++ I + + + +
Sbjct: 267 ANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKII 326
Query: 178 SGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQER 237
+G + + + ++ K V ++ +A+ + GEV + R
Sbjct: 327 TGLSKRNKWIAKLAIKLAQKDENAFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETR 386
Query: 238 VENLNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNS-IDYLHRTGRTARMGAK 296
+N + + + G+ + H ++ + S I L GR R
Sbjct: 387 NIMKTLAENGK-GIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRK-HG 444
Query: 297 GKVTSLV 303
K + V
Sbjct: 445 SKTIATV 451
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* Length = 556 | Back alignment and structure |
|---|
Score = 54.2 bits (129), Expect = 2e-08
Identities = 32/197 (16%), Positives = 71/197 (36%), Gaps = 18/197 (9%)
Query: 140 MTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGN 199
+T+ + + + T+ +K + KLE L+ +L+ +
Sbjct: 330 LTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNP 389
Query: 200 --KVMVFCNTLNSSRAVDHFLNENQI------------STVNYHGEVPAQERVENLNKFK 245
+ ++F T A+ + EN I + + + L+ FK
Sbjct: 390 QTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 449
Query: 246 NEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304
D L+ T +A G+D+ + V+++++ N + GR R A K + +
Sbjct: 450 T-SKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTS 506
Query: 305 KKDVLLADRIEEAIRKN 321
K +V+ ++ +
Sbjct: 507 KTEVVENEKCNRYKEEM 523
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} Length = 797 | Back alignment and structure |
|---|
Score = 53.4 bits (127), Expect = 5e-08
Identities = 32/193 (16%), Positives = 71/193 (36%), Gaps = 18/193 (9%)
Query: 140 MTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL--SK 197
+T+ + + + T+ +K + KLE L+ +L+ + +
Sbjct: 571 LTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNP 630
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQI------------STVNYHGEVPAQERVENLNKFK 245
+ ++F T A+ + EN I + + + L+ FK
Sbjct: 631 QTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 690
Query: 246 NEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304
D L+ T +A G+D+ + V+++++ N + GR R A K + +
Sbjct: 691 T-SKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTS 747
Query: 305 KKDVLLADRIEEA 317
K +V+ ++
Sbjct: 748 KTEVVENEKCNRY 760
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A* 1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A Length = 666 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 2e-06
Identities = 45/304 (14%), Positives = 83/304 (27%), Gaps = 76/304 (25%)
Query: 16 RRPRAVVLCPTRELSEQVF-RVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74
+ + +VL P+ + ++K+ + +R P+ T
Sbjct: 256 QGYKVLVLNPSVAATLGFGAYMSKAHGID-------PNIRTGVRTITTG--APVT--YST 304
Query: 75 PGRILQHIEDGNMVY-GDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
G+ L G ++ DE + D I L +
Sbjct: 305 YGKFLAD----GGCSGGAYDIIICDECHST-DSTTILGIGTVLDQAETAG--------AR 351
Query: 134 VLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEP 193
++V AT T V H I ++ + +
Sbjct: 352 LVVLATATPPGSVTVP--------------HPNIEEVALSN------TGEIPFYGKAIPI 391
Query: 194 SLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253
+G + ++FC++ + L+ I+ V Y+ + +
Sbjct: 392 EAIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSVIPTIGDVV--------- 442
Query: 254 LVCTDLAARGLDLDVDHVI--------MFDF-------------PLNSIDYLHRTGRTAR 292
+V TD G D D VI DF P +++ R GRT R
Sbjct: 443 VVATDALMTGYTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR 502
Query: 293 MGAK 296
Sbjct: 503 GRRG 506
|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 Length = 271 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 9e-05
Identities = 20/97 (20%), Positives = 53/97 (54%), Gaps = 6/97 (6%)
Query: 183 KLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNY-HGEVPAQERVENL 241
K+ ++++E +L +G+K+ +F ++ + + + + + + V + +GE+ +ER + +
Sbjct: 97 KMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDII 156
Query: 242 NKFKNEDGDCPTLVCTDLAARGLDLDV---DHVIMFD 275
+KF + +V + + A G +++ + VI FD
Sbjct: 157 SKF-QNNPSVKFIVLS-VKAGGFGINLTSANRVIHFD 191
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 1e-04
Identities = 56/339 (16%), Positives = 115/339 (33%), Gaps = 75/339 (22%)
Query: 7 AMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNN 66
AM+ ++ +AV + P + L+E+ F+ + R M +G + +
Sbjct: 59 AMVHRILTQGG-KAVYIVPLKALAEEKFQEFQDWEKIG-LRVAMATGDYDSKDEWLG--- 113
Query: 67 PIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKP 126
D+++ T + + G+ D+K LV DE + R G + L + +A
Sbjct: 114 KYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGKA--- 170
Query: 127 NGQGFQTVLVSATMTKAVQ-------KLVDEECQGIAHLRTSTLHKKIASARHDFIKLSG 179
Q + +SAT+ + +L+ + R L + + + G
Sbjct: 171 -----QIIGLSATIGNPEELAEWLNAELIVSDW------RPVKLRRGVFYQGFVTWE-DG 218
Query: 180 SENKLEALLQVLEPSLSKGNKVMVFCNT--------------------LNSSRAVDHFLN 219
S ++ + +++ ++ K ++F N RA++ +
Sbjct: 219 SIDRFSSWEELVYDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELAD 278
Query: 220 ENQISTVN-------------YHGEVPAQER--VENLNKFKNEDGDCPTLVCTDLAARGL 264
+ + N +H + ER VE F+ G +V T + G+
Sbjct: 279 SLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEEN--FRK--GIIKAVVATPTLSAGI 334
Query: 265 DLDVDHVIMFDF---------PLNSIDYLHRTGRTARMG 294
+ VI+ D + I+ GR R
Sbjct: 335 NTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPK 373
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A Length = 500 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 2e-04
Identities = 31/157 (19%), Positives = 60/157 (38%), Gaps = 44/157 (28%)
Query: 183 KLEALLQVLEPSLSKGNKVMVFCNTLNS------SRAVDHFLNENQISTVNYHGEVPAQE 236
K+ ++++E +L +G+K+ +F + + E +GE+ +E
Sbjct: 326 KMIRTMEIIEEALDEGDKIAIF-----TQFVDMGKIIRNIIEKELNTEVPFLYGELSKKE 380
Query: 237 RVENLNKFKNEDGDCPTLVCTDLAA--RGLDL-DVDHVIMFDFPLNSIDYLHR------- 286
R + ++KF + +V + + A G++L + VI FD R
Sbjct: 381 RDDIISKF-QNNPSVKFIVLS-VKAGGFGINLTSANRVIHFD----------RWWNPAVE 428
Query: 287 ---TGRTARMGAKGKVTS--LVAKKDVLLADRIEEAI 318
T R R+G V L++ +EE I
Sbjct: 429 DQATDRVYRIGQTRNVIVHKLISV------GTLEEKI 459
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 323 | |||
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 100.0 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 100.0 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 100.0 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 100.0 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 100.0 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 100.0 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 100.0 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 100.0 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 100.0 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 100.0 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 100.0 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 100.0 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 100.0 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 100.0 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 100.0 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 100.0 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 100.0 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 100.0 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 100.0 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 100.0 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 100.0 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 100.0 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 100.0 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 100.0 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 100.0 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 100.0 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 100.0 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 100.0 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 100.0 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 100.0 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 100.0 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 100.0 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 100.0 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 100.0 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 100.0 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 100.0 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 100.0 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 100.0 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 100.0 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 99.97 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 99.97 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 99.97 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 99.97 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 99.97 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 99.97 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 99.97 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 99.97 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 99.97 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 99.97 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 99.97 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 99.96 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 99.96 | |
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 99.96 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 99.96 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 99.96 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 99.96 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 99.96 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 99.95 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 99.95 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 99.95 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 99.95 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 99.94 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.93 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 99.88 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 99.93 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 99.92 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 99.92 | |
| 2ipc_A | 997 | Preprotein translocase SECA subunit; nucleotide bi | 99.87 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 99.86 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 99.85 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 99.85 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 99.84 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 99.84 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 99.84 | |
| 1z5z_A | 271 | Helicase of the SNF2/RAD54 family; hydrolase, reco | 99.84 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 99.84 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 99.83 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 99.83 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 99.82 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.82 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 99.81 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 99.81 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 99.79 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 99.79 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 99.55 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 99.51 | |
| 1rif_A | 282 | DAR protein, DNA helicase UVSW; bacteriophage, REC | 99.47 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 99.39 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 99.29 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 99.22 | |
| 3hgt_A | 328 | HDA1 complex subunit 3; RECA-like domain, SWI2/SNF | 98.47 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 98.2 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 96.23 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 96.18 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 95.66 | |
| 1w36_D | 608 | RECD, exodeoxyribonuclease V alpha chain; recombin | 95.4 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 95.07 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 94.84 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 94.76 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 94.67 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 94.01 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 93.83 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 93.65 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 93.35 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 92.88 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 91.26 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 89.82 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 90.13 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 89.98 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 89.52 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 88.92 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 88.56 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 87.88 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 87.86 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 87.73 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 87.64 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 87.55 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 87.3 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 87.24 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 86.71 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 86.57 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 86.48 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 85.91 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 85.78 | |
| 3gk5_A | 108 | Uncharacterized rhodanese-related protein TVG08686 | 85.77 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 85.19 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 85.16 | |
| 3vkw_A | 446 | Replicase large subunit; alpha/beta domain, helica | 84.0 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 83.97 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 83.59 | |
| 3eme_A | 103 | Rhodanese-like domain protein; alpha-beta-alpha sa | 83.53 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 83.37 | |
| 3foj_A | 100 | Uncharacterized protein; protein SSP1007, structur | 83.28 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 82.99 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 82.75 | |
| 3iwh_A | 103 | Rhodanese-like domain protein; alpha-beta-alpha sa | 82.62 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 82.6 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 82.45 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 82.38 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 81.42 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 80.96 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 80.82 | |
| 2gk6_A | 624 | Regulator of nonsense transcripts 1; UPF1, helicas | 80.34 |
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-47 Score=340.58 Aligned_cols=296 Identities=30% Similarity=0.557 Sum_probs=258.2
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcE
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKY 94 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~ 94 (323)
..++++|||+||++|+.|+.++++++....++++..++|+.....+...+..+++|+|+||+++.+++.+....++++++
T Consensus 127 ~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~ 206 (434)
T 2db3_A 127 LGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRF 206 (434)
T ss_dssp TTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCE
T ss_pred cCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCe
Confidence 34789999999999999999999999988888999999998877776667778999999999999999988888999999
Q ss_pred EeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeE
Q 047490 95 LVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDF 174 (323)
Q Consensus 95 vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (323)
+|+||||++.+.+|.+.+..++..+... .+.|++++|||+++........++..+..+...........+.+.+
T Consensus 207 lVlDEah~~~~~gf~~~~~~i~~~~~~~------~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~ 280 (434)
T 2db3_A 207 VVLDEADRMLDMGFSEDMRRIMTHVTMR------PEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTI 280 (434)
T ss_dssp EEEETHHHHTSTTTHHHHHHHHHCTTSC------SSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEE
T ss_pred EEEccHhhhhccCcHHHHHHHHHhcCCC------CCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEE
Confidence 9999999999999999999998775321 2449999999999999888888887776665554444444555555
Q ss_pred EeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEE
Q 047490 175 IKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254 (323)
Q Consensus 175 ~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~il 254 (323)
..+. ...|...+.+.+... +.++||||++++.++.+++.|++.+..+..+||+++..+|..++++|++ |+.+||
T Consensus 281 ~~~~-~~~k~~~l~~~l~~~---~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~--g~~~vL 354 (434)
T 2db3_A 281 YEVN-KYAKRSKLIEILSEQ---ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKN--GSMKVL 354 (434)
T ss_dssp EECC-GGGHHHHHHHHHHHC---CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHT--SSCSEE
T ss_pred EEeC-cHHHHHHHHHHHHhC---CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHc--CCCcEE
Confidence 5544 566888888888764 3459999999999999999999999999999999999999999999999 999999
Q ss_pred EEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeC-CcHHHHHHHHHHHHhcC
Q 047490 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAK-KDVLLADRIEEAIRKNE 322 (323)
Q Consensus 255 v~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~-~~~~~~~~i~~~l~~~~ 322 (323)
|||+++++|+|+ ++++||+||+|.+..+|.||+||+||.|+.|.+++++++ .+...++.+.+.++...
T Consensus 355 vaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~ 424 (434)
T 2db3_A 355 IATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSG 424 (434)
T ss_dssp EECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTT
T ss_pred EEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcC
Confidence 999999999999 999999999999999999999999999999999999994 57788899999887654
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-46 Score=330.07 Aligned_cols=296 Identities=27% Similarity=0.458 Sum_probs=258.7
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCc
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIK 93 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~ 93 (323)
..+++++||++||++|+.|+.+.++++....++.+..+.|+.........+..+++|+|+||+++...+.+....+.+++
T Consensus 102 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~ 181 (410)
T 2j0s_A 102 QVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIK 181 (410)
T ss_dssp TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCC
T ss_pred ccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhhee
Confidence 35678999999999999999999999998888999999998776666555656689999999999999988878889999
Q ss_pred EEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceee
Q 047490 94 YLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHD 173 (323)
Q Consensus 94 ~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (323)
++|+||+|++.+.++...+..++..+.. +.+++++|||+++........++..+..+...........+.+.
T Consensus 182 ~vViDEah~~~~~~~~~~~~~i~~~~~~--------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (410)
T 2j0s_A 182 MLVLDEADEMLNKGFKEQIYDVYRYLPP--------ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQF 253 (410)
T ss_dssp EEEEETHHHHTSTTTHHHHHHHHTTSCT--------TCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEE
T ss_pred EEEEccHHHHHhhhhHHHHHHHHHhCcc--------CceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEE
Confidence 9999999999998888888888776643 33999999999988877777766666655544444455566677
Q ss_pred EEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCE
Q 047490 174 FIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPT 253 (323)
Q Consensus 174 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~i 253 (323)
+........|...+.+++... ..+++||||++.+.++.+++.|++.+..+..+||+++..+|..+++.|++ |+.+|
T Consensus 254 ~~~~~~~~~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~--g~~~v 329 (410)
T 2j0s_A 254 FVAVEREEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRS--GASRV 329 (410)
T ss_dssp EEEESSTTHHHHHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHH--TSSCE
T ss_pred EEEeCcHHhHHHHHHHHHHhc--CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHC--CCCCE
Confidence 777776677888888888764 45699999999999999999999999999999999999999999999999 99999
Q ss_pred EEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHhc
Q 047490 254 LVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRKN 321 (323)
Q Consensus 254 lv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~~ 321 (323)
||||+++++|+|+ ++++||++++|++...|.||+||+||.|+.|.++++++..|...++.+++.++..
T Consensus 330 lv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 398 (410)
T 2j0s_A 330 LISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQ 398 (410)
T ss_dssp EEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCC
T ss_pred EEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCC
Confidence 9999999999999 9999999999999999999999999999999999999999999999999887653
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-45 Score=327.59 Aligned_cols=299 Identities=31% Similarity=0.531 Sum_probs=253.4
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEE
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYL 95 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~v 95 (323)
.++++||++||++|+.|+.+.++++....++++..++|+.........+..+++|+|+||++|.+.+......++++++|
T Consensus 100 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~i 179 (417)
T 2i4i_A 100 QYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYL 179 (417)
T ss_dssp BCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEE
T ss_pred CCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEE
Confidence 35789999999999999999999998888889999999977766666667778999999999999998887788999999
Q ss_pred eecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEE
Q 047490 96 VLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFI 175 (323)
Q Consensus 96 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (323)
|+||+|++.++++...+..++...... .....+++++|||+++.........+..+..............+.+.+.
T Consensus 180 ViDEah~~~~~~~~~~~~~i~~~~~~~----~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 255 (417)
T 2i4i_A 180 VLDEADRMLDMGFEPQIRRIVEQDTMP----PKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQKVV 255 (417)
T ss_dssp EESSHHHHHHTTCHHHHHHHHTSSSCC----CBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSEEEEEE
T ss_pred EEEChhHhhccCcHHHHHHHHHhccCC----CcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCceEEEE
Confidence 999999999988988888887643211 1124589999999999888888887776655554443344445555555
Q ss_pred eccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEE
Q 047490 176 KLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255 (323)
Q Consensus 176 ~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv 255 (323)
... ...+...+.+++... ..++++||||++.+.++.+++.|++.+..+..+||+++..+|.+++++|++ |+.+|||
T Consensus 256 ~~~-~~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~--g~~~vlv 331 (417)
T 2i4i_A 256 WVE-ESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS--GKSPILV 331 (417)
T ss_dssp ECC-GGGHHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHH--TSSCEEE
T ss_pred Eec-cHhHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHc--CCCCEEE
Confidence 444 466888888888764 456799999999999999999999999999999999999999999999999 9999999
Q ss_pred EecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHhcC
Q 047490 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRKNE 322 (323)
Q Consensus 256 ~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~~~ 322 (323)
||+++++|+|+ ++++||++++|.|...|.||+||+||.|+.|.+++++++.|...++.+.+.++...
T Consensus 332 aT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~ 399 (417)
T 2i4i_A 332 ATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAK 399 (417)
T ss_dssp ECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTT
T ss_pred ECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhc
Confidence 99999999999 99999999999999999999999999999999999999999999999999887643
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-45 Score=325.00 Aligned_cols=296 Identities=29% Similarity=0.458 Sum_probs=246.6
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccC-CCCCEEEeChHHHHHHHHcCCCCCCCC
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLN-NPIDMVVGTPGRILQHIEDGNMVYGDI 92 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Iii~Tp~~l~~~~~~~~~~~~~~ 92 (323)
..++.++||++|+++|+.|+.+.+++++...+..+....|+.........+. .+++|+|+||+++.+.+......+.++
T Consensus 105 ~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~ 184 (414)
T 3eiq_A 105 DLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYI 184 (414)
T ss_dssp TSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTC
T ss_pred cCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccC
Confidence 3467899999999999999999999998888889998888876655544443 668999999999999998887788899
Q ss_pred cEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccccccccccee
Q 047490 93 KYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARH 172 (323)
Q Consensus 93 ~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (323)
++||+||+|++.++++...+..++..+.. +.+++++|||+++.........+..+..+...........+.+
T Consensus 185 ~~vViDEah~~~~~~~~~~~~~~~~~~~~--------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (414)
T 3eiq_A 185 KMFVLDEADEMLSRGFKDQIYDIFQKLNS--------NTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQ 256 (414)
T ss_dssp CEEEECSHHHHHHTTTHHHHHHHHTTSCT--------TCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCE
T ss_pred cEEEEECHHHhhccCcHHHHHHHHHhCCC--------CCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceE
Confidence 99999999999998888888888877654 3499999999999888888887777766655555556666777
Q ss_pred eEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCC
Q 047490 173 DFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252 (323)
Q Consensus 173 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ 252 (323)
.+........+...+.+++... .++++||||++++.++.+++.|++.+..+..+||+++..+|..+++.|++ |+.+
T Consensus 257 ~~~~~~~~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~--g~~~ 332 (414)
T 3eiq_A 257 FYINVEREEWKLDTLCDLYETL--TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRS--GSSR 332 (414)
T ss_dssp EEEECSSSTTHHHHHHHHHHSS--CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSC--C---
T ss_pred EEEEeChHHhHHHHHHHHHHhC--CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHc--CCCc
Confidence 7777777777899998888765 56799999999999999999999999999999999999999999999999 9999
Q ss_pred EEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHhc
Q 047490 253 TLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRKN 321 (323)
Q Consensus 253 ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~~ 321 (323)
|||||+++++|+|+ ++++||+++.|.|...|.||+||+||.|+.|.|+++++..|...++.+++.++..
T Consensus 333 vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 402 (414)
T 3eiq_A 333 VLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTS 402 (414)
T ss_dssp CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCC
T ss_pred EEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCC
Confidence 99999999999999 9999999999999999999999999999999999999999999999999887653
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-44 Score=315.44 Aligned_cols=292 Identities=28% Similarity=0.472 Sum_probs=247.1
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcE
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKY 94 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~ 94 (323)
.+++++||++|+++|+.|+.+.++++....++++...+|+............+++|+|+||+++.+.+.+....++++++
T Consensus 87 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~ 166 (400)
T 1s2m_A 87 LNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSL 166 (400)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCE
T ss_pred cCCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCE
Confidence 45679999999999999999999999988888999998887765555555667899999999999998887778899999
Q ss_pred EeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeE
Q 047490 95 LVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDF 174 (323)
Q Consensus 95 vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (323)
+|+||+|++.+.++...+..++..+.. ..+++++|||++......+...+..+....... ........+.+
T Consensus 167 vIiDEaH~~~~~~~~~~~~~i~~~~~~--------~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 237 (400)
T 1s2m_A 167 FIMDEADKMLSRDFKTIIEQILSFLPP--------THQSLLFSATFPLTVKEFMVKHLHKPYEINLME-ELTLKGITQYY 237 (400)
T ss_dssp EEEESHHHHSSHHHHHHHHHHHTTSCS--------SCEEEEEESCCCHHHHHHHHHHCSSCEEESCCS-SCBCTTEEEEE
T ss_pred EEEeCchHhhhhchHHHHHHHHHhCCc--------CceEEEEEecCCHHHHHHHHHHcCCCeEEEecc-ccccCCceeEE
Confidence 999999999876666666666655543 349999999999988888887776655443322 12233333443
Q ss_pred EeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEE
Q 047490 175 IKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTL 254 (323)
Q Consensus 175 ~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~il 254 (323)
. ......|...+..++... .++++||||++.+.++.+++.|+..+..+..+||+++..+|..+++.|++ |+.+||
T Consensus 238 ~-~~~~~~k~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~~vL 312 (400)
T 1s2m_A 238 A-FVEERQKLHCLNTLFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQ--GKVRTL 312 (400)
T ss_dssp E-ECCGGGHHHHHHHHHHHS--CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHT--TSSSEE
T ss_pred E-EechhhHHHHHHHHHhhc--CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhc--CCCcEE
Confidence 3 334566777777777654 56799999999999999999999999999999999999999999999999 999999
Q ss_pred EEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHh
Q 047490 255 VCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRK 320 (323)
Q Consensus 255 v~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~ 320 (323)
|||+++++|+|+ ++++||++++|+|...|.||+||+||.|+.|.|+++++..|...++++++.++.
T Consensus 313 v~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~ 379 (400)
T 1s2m_A 313 VCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGT 379 (400)
T ss_dssp EESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTC
T ss_pred EEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCC
Confidence 999999999999 999999999999999999999999999999999999999999999999998764
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-43 Score=307.19 Aligned_cols=294 Identities=30% Similarity=0.535 Sum_probs=249.6
Q ss_pred hccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCC
Q 047490 9 LGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMV 88 (323)
Q Consensus 9 ~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~ 88 (323)
+..+...+++++||++|+++|+.|+.+.++++....++.+..++|+.........+. +++|+|+||+++.+.+......
T Consensus 66 ~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~ 144 (367)
T 1hv8_A 66 IELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLN 144 (367)
T ss_dssp HHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSC
T ss_pred HHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcc
Confidence 334445568899999999999999999999998887888988888876544433333 4799999999999999887777
Q ss_pred CCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccc
Q 047490 89 YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIA 168 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (323)
+.+++++|+||+|.+.++++...+..++..+.. +.+++++|||+++........++..+....... ..
T Consensus 145 ~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~--------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~ 212 (367)
T 1hv8_A 145 LKNVKYFILDEADEMLNMGFIKDVEKILNACNK--------DKRILLFSATMPREILNLAKKYMGDYSFIKAKI----NA 212 (367)
T ss_dssp TTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCS--------SCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS----SS
T ss_pred cccCCEEEEeCchHhhhhchHHHHHHHHHhCCC--------CceEEEEeeccCHHHHHHHHHHcCCCeEEEecC----CC
Confidence 899999999999999988888888877766543 339999999999988887777766554433221 12
Q ss_pred cceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccC
Q 047490 169 SARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNED 248 (323)
Q Consensus 169 ~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 248 (323)
.+.+.+... ....+...+.+.+.. .+.++||||++.+.++.+++.|+..+..+..+||+++..+|..+++.|++
T Consensus 213 ~~~~~~~~~-~~~~~~~~l~~~l~~---~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~-- 286 (367)
T 1hv8_A 213 NIEQSYVEV-NENERFEALCRLLKN---KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQ-- 286 (367)
T ss_dssp SSEEEEEEC-CGGGHHHHHHHHHCS---TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHT--
T ss_pred CceEEEEEe-ChHHHHHHHHHHHhc---CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHc--
Confidence 334444443 356788888888873 67799999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHhc
Q 047490 249 GDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRKN 321 (323)
Q Consensus 249 g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~~ 321 (323)
|+.+|||||+++++|+|+ ++++||++++|+|...|.||+||+||.|+.|.+++++++.|...++.+++.++.+
T Consensus 287 ~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 360 (367)
T 1hv8_A 287 KKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLK 360 (367)
T ss_dssp TSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCC
T ss_pred CCCeEEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCC
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999988654
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-43 Score=309.99 Aligned_cols=294 Identities=26% Similarity=0.438 Sum_probs=241.5
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHhcccc-ceeEEEeecCccCCccccccC-CCCCEEEeChHHHHHHHHcCCCCCCC
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHA-RFRSTMVSGGGRLRPQEDSLN-NPIDMVVGTPGRILQHIEDGNMVYGD 91 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~Iii~Tp~~l~~~~~~~~~~~~~ 91 (323)
..+++++||++|+++|+.|+.+.++++.... ++++..++|+.........+. +.++|+|+||+++...+......+.+
T Consensus 73 ~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 73 VTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred cCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 3456799999999999999999999997765 688989988876554444332 34799999999999998888778899
Q ss_pred CcEEeecchhhhhcC-CChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccccc-cccc
Q 047490 92 IKYLVLDEADTMFDR-GFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHK-KIAS 169 (323)
Q Consensus 92 ~~~vIiDE~h~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 169 (323)
++++|+||+|++.++ ++...+..++..... ..+++++|||+++.........+..+..+....... ....
T Consensus 153 ~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~--------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (391)
T 1xti_A 153 IKHFILDECDKMLEQLDMRRDVQEIFRMTPH--------EKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHG 224 (391)
T ss_dssp CSEEEECSHHHHTSSHHHHHHHHHHHHTSCS--------SSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTT
T ss_pred cCEEEEeCHHHHhhccchHHHHHHHHhhCCC--------CceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCccc
Confidence 999999999999763 455555555554432 349999999999998888888877665554433222 2233
Q ss_pred ceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCC
Q 047490 170 ARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249 (323)
Q Consensus 170 ~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g 249 (323)
..+.+.. .....+...+.+++... .++++||||++.+.++.+++.|++.+..+..+||+++..+|..+++.|++ |
T Consensus 225 ~~~~~~~-~~~~~~~~~l~~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~--~ 299 (391)
T 1xti_A 225 LQQYYVK-LKDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKD--F 299 (391)
T ss_dssp CEEEEEE-CCGGGHHHHHHHHHHHS--CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT--T
T ss_pred ceEEEEE-cCchhHHHHHHHHHHhc--CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhc--C
Confidence 3344443 34566888888888764 66899999999999999999999999999999999999999999999999 9
Q ss_pred CCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCC-cHHHHHHHHHHHHh
Q 047490 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKK-DVLLADRIEEAIRK 320 (323)
Q Consensus 250 ~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~-~~~~~~~i~~~l~~ 320 (323)
+.+|||||+++++|+|+ ++++||++++|+|...|.||+||+||.|+.|.++++++.. +...++.+++.++.
T Consensus 300 ~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 372 (391)
T 1xti_A 300 QRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEV 372 (391)
T ss_dssp CCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTC
T ss_pred CCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcC
Confidence 99999999999999999 8999999999999999999999999999999999999976 45667888777653
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=306.26 Aligned_cols=291 Identities=26% Similarity=0.437 Sum_probs=245.5
Q ss_pred cCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCC
Q 047490 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDI 92 (323)
Q Consensus 13 ~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~ 92 (323)
...+++++||++|+++|+.|+.+.++++....++.+....++...... ..+++|+|+||+++...+.+....++++
T Consensus 71 ~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~ 146 (395)
T 3pey_A 71 PEDASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKI 146 (395)
T ss_dssp TTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTC
T ss_pred cCCCCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccC
Confidence 345678999999999999999999999988778888888777543332 2257999999999999998887889999
Q ss_pred cEEeecchhhhhc-CCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccce
Q 047490 93 KYLVLDEADTMFD-RGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASAR 171 (323)
Q Consensus 93 ~~vIiDE~h~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (323)
++||+||+|++.+ .++...+..+...+.. +.+++++|||+++.........+.....+.............
T Consensus 147 ~~iIiDEah~~~~~~~~~~~~~~~~~~~~~--------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (395)
T 3pey_A 147 KIFVLDEADNMLDQQGLGDQCIRVKRFLPK--------DTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIK 218 (395)
T ss_dssp CEEEEETHHHHHHSTTHHHHHHHHHHTSCT--------TCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEE
T ss_pred CEEEEEChhhhcCccccHHHHHHHHHhCCC--------CcEEEEEEecCCHHHHHHHHHhCCCCeEEEcccccccccccc
Confidence 9999999999987 4566666666655543 349999999999998888888877776666555555556666
Q ss_pred eeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCC
Q 047490 172 HDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC 251 (323)
Q Consensus 172 ~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~ 251 (323)
+.+........+...+..++... .++++||||++++.++.+++.|++.+..+..+||+++..+|..+++.|++ |+.
T Consensus 219 ~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g~~ 294 (395)
T 3pey_A 219 QLYMDCKNEADKFDVLTELYGLM--TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFRE--GRS 294 (395)
T ss_dssp EEEEECSSHHHHHHHHHHHHTTT--TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHT--TSC
T ss_pred EEEEEcCchHHHHHHHHHHHHhc--cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHC--CCC
Confidence 66776666677878887777654 56799999999999999999999999999999999999999999999999 999
Q ss_pred CEEEEecccccccCC-CCCEEEEcCCCC------CchhhhhhhcccccCCCcceEEEEeeCC-cHHHHHHHHHHHH
Q 047490 252 PTLVCTDLAARGLDL-DVDHVIMFDFPL------NSIDYLHRTGRTARMGAKGKVTSLVAKK-DVLLADRIEEAIR 319 (323)
Q Consensus 252 ~ilv~t~~~~~Gid~-~~~~vi~~~~p~------s~~~~~Q~~GR~~R~~~~g~~~~~~~~~-~~~~~~~i~~~l~ 319 (323)
+|||||+++++|+|+ ++++||++++|+ |...|.||+||+||.|+.|.+++++... +...++.+++.++
T Consensus 295 ~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~ 370 (395)
T 3pey_A 295 KVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFG 370 (395)
T ss_dssp CEEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTT
T ss_pred CEEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhC
Confidence 999999999999999 999999999998 9999999999999999999999999875 4556777776655
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-42 Score=307.83 Aligned_cols=294 Identities=26% Similarity=0.429 Sum_probs=247.1
Q ss_pred cCCCCccEEEEcCCHHHHHHHHHHHHHhcccc-ceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHc-CCCCCC
Q 047490 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHA-RFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIED-GNMVYG 90 (323)
Q Consensus 13 ~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~-~~~~~~ 90 (323)
...+++++||++|+++|+.|+.+.++++.... +..+....++....... ..+++|+|+||+++.+.+.+ ....++
T Consensus 91 ~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ivv~T~~~l~~~~~~~~~~~~~ 167 (412)
T 3fht_A 91 PANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPK 167 (412)
T ss_dssp TTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCSSCGG
T ss_pred hcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh---cCCCCEEEECchHHHHHHHhcCCcChh
Confidence 34566799999999999999999999987653 56777777765543322 34579999999999998865 455678
Q ss_pred CCcEEeecchhhhhc-CCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccccccccc
Q 047490 91 DIKYLVLDEADTMFD-RGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIAS 169 (323)
Q Consensus 91 ~~~~vIiDE~h~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (323)
+++++|+||+|++.+ .++......+...+.. +.+++++|||+++.........+..+..+...........
T Consensus 168 ~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~--------~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (412)
T 3fht_A 168 KIKVFVLDEADVMIATQGHQDQSIRIQRMLPR--------NCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDT 239 (412)
T ss_dssp GCCEEEEETHHHHHSTTTTHHHHHHHHHTSCT--------TCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTT
T ss_pred hCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCC--------CceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccC
Confidence 999999999999987 5677777776666543 3499999999999998888888887777666655556666
Q ss_pred ceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCC
Q 047490 170 ARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249 (323)
Q Consensus 170 ~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g 249 (323)
+.+.+........+...+.+.+... .++++||||++.+.++.+++.|++.+..+..+||+|+..+|..+++.|++ |
T Consensus 240 ~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~--g 315 (412)
T 3fht_A 240 IKQYYVLCSSRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFRE--G 315 (412)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHH--SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHT--T
T ss_pred ceEEEEEcCChHHHHHHHHHHHhhc--CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHC--C
Confidence 7777777766677888888887764 56799999999999999999999999999999999999999999999999 9
Q ss_pred CCCEEEEecccccccCC-CCCEEEEcCCCC------CchhhhhhhcccccCCCcceEEEEeeCCc-HHHHHHHHHHHHhc
Q 047490 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPL------NSIDYLHRTGRTARMGAKGKVTSLVAKKD-VLLADRIEEAIRKN 321 (323)
Q Consensus 250 ~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~------s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~-~~~~~~i~~~l~~~ 321 (323)
+.+|||||+++++|+|+ ++++||+++.|. +...|.||+||+||.|+.|.++++++..+ ...++.+++.++..
T Consensus 316 ~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~ 395 (412)
T 3fht_A 316 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKK 395 (412)
T ss_dssp SCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCC
T ss_pred CCcEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCc
Confidence 99999999999999999 999999999994 66899999999999999999999999764 78888998887643
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=319.23 Aligned_cols=295 Identities=28% Similarity=0.492 Sum_probs=116.4
Q ss_pred cCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCC
Q 047490 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDI 92 (323)
Q Consensus 13 ~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~ 92 (323)
...+++++||++|+++|+.|+.+.++++....++++..++|+.........+. +++|+|+||+++...+......+.++
T Consensus 85 ~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~ 163 (394)
T 1fuu_A 85 TSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKI 163 (394)
T ss_dssp TTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred ccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhC
Confidence 34567899999999999999999999998888889999998876544433333 47999999999999998877778899
Q ss_pred cEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccccccccccee
Q 047490 93 KYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARH 172 (323)
Q Consensus 93 ~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (323)
+++|+||+|++.++++...+..++..+... .+++++|||+++.........+..+..+...........+.+
T Consensus 164 ~~vIiDEah~~~~~~~~~~~~~~~~~~~~~--------~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (394)
T 1fuu_A 164 KMFILDEADEMLSSGFKEQIYQIFTLLPPT--------TQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQ 235 (394)
T ss_dssp CEEEEETHHHHHHTTCHHHHHHHHHHSCTT--------CEEEEECSSCCHHHHHHHHHHCCSCEEEEECC----------
T ss_pred cEEEEEChHHhhCCCcHHHHHHHHHhCCCC--------ceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceE
Confidence 999999999999888888888888776543 399999999999888888777776665554443334444555
Q ss_pred eEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCC
Q 047490 173 DFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP 252 (323)
Q Consensus 173 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ 252 (323)
.+........+...+.+++... .++++||||++.+.++.+++.|++.+..+..+||+++..+|..+++.|++ |+.+
T Consensus 236 ~~~~~~~~~~~~~~l~~~~~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~--~~~~ 311 (394)
T 1fuu_A 236 FYVNVEEEEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRS--GSSR 311 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEcCchhhHHHHHHHHHhcC--CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHC--CCCc
Confidence 5555554455666676666553 45799999999999999999999999999999999999999999999998 9999
Q ss_pred EEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHh
Q 047490 253 TLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRK 320 (323)
Q Consensus 253 ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~ 320 (323)
|||||+++++|+|+ ++++||++++|+|...|.||+||+||.|+.|.|+++++..|...++.+++.++.
T Consensus 312 vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~ 380 (394)
T 1fuu_A 312 ILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYST 380 (394)
T ss_dssp ---------------------------------------------------------------------
T ss_pred EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCC
Confidence 99999999999999 999999999999999999999999999999999999999999999988887654
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-42 Score=317.08 Aligned_cols=301 Identities=26% Similarity=0.453 Sum_probs=237.8
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccc----cceeEEEeecCccCCcccccc-CCCCCEEEeChHHHHHHHHcC-CCC
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHH----ARFRSTMVSGGGRLRPQEDSL-NNPIDMVVGTPGRILQHIEDG-NMV 88 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~Iii~Tp~~l~~~~~~~-~~~ 88 (323)
..++++|||+||++|+.|+.+.++++... ....+..+.|+.........+ ..+++|+|+||+++...+.+. ...
T Consensus 93 ~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~ 172 (579)
T 3sqw_A 93 QYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKF 172 (579)
T ss_dssp TTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccc
Confidence 34679999999999999999999998632 245677788886655544443 336899999999999888764 345
Q ss_pred CCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccc----cc
Q 047490 89 YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTST----LH 164 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~----~~ 164 (323)
++++++||+||||++.+++|.+.+..++..+....... ..+++++++|||+++.........+..+....... ..
T Consensus 173 ~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~-~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~ 251 (579)
T 3sqw_A 173 FRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKS-ADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEP 251 (579)
T ss_dssp CTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSC-TTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSC
T ss_pred cccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhccc-ccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCcccc
Confidence 78899999999999999999999999988876543211 12569999999999988887777766554433221 11
Q ss_pred cccccceeeEEeccCChhHHHHH----HHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC---CCeeEEecCCCCHHHH
Q 047490 165 KKIASARHDFIKLSGSENKLEAL----LQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN---QISTVNYHGEVPAQER 237 (323)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~k~~~l----~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~r 237 (323)
.....+.+.+........+...+ .+.+... ..+.++||||+++..++.+++.|++. +..+..+||+|+..+|
T Consensus 252 ~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R 330 (579)
T 3sqw_A 252 EAHERIDQSVVISEKFANSIFAAVEHIKKQIKER-DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKR 330 (579)
T ss_dssp SSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHT-TTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHH
T ss_pred ccccccceEEEEecchhhhHHHHHHHHHHHHhhc-CCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHH
Confidence 12223334444444333333333 3333221 35679999999999999999999876 8899999999999999
Q ss_pred HHHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHH
Q 047490 238 VENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEE 316 (323)
Q Consensus 238 ~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~ 316 (323)
..++++|++ |+.+|||||+++++|+|+ ++++||++++|.+...|.||+||+||.|+.|.+++++++.|...++.+++
T Consensus 331 ~~~~~~F~~--g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~ 408 (579)
T 3sqw_A 331 TSLVKRFKK--DESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELED 408 (579)
T ss_dssp HHHHHHHHH--CSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHH
T ss_pred HHHHHHhhc--CCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHH
Confidence 999999999 999999999999999999 89999999999999999999999999999999999999999999999887
Q ss_pred HHH
Q 047490 317 AIR 319 (323)
Q Consensus 317 ~l~ 319 (323)
..+
T Consensus 409 ~~~ 411 (579)
T 3sqw_A 409 AKN 411 (579)
T ss_dssp HHC
T ss_pred HhC
Confidence 653
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-42 Score=315.71 Aligned_cols=300 Identities=26% Similarity=0.465 Sum_probs=236.6
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccc----cceeEEEeecCccCCcccccc-CCCCCEEEeChHHHHHHHHcC-CCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHH----ARFRSTMVSGGGRLRPQEDSL-NNPIDMVVGTPGRILQHIEDG-NMVY 89 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~Iii~Tp~~l~~~~~~~-~~~~ 89 (323)
.++++|||+||++|+.|+.+.++++... ....+..+.|+.........+ ..+++|+|+||+++...+.+. ...+
T Consensus 145 ~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~ 224 (563)
T 3i5x_A 145 YMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFF 224 (563)
T ss_dssp TSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHC
T ss_pred CCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhcccccc
Confidence 3579999999999999999999997542 235677788886655444433 346899999999999888764 3457
Q ss_pred CCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccc----cc
Q 047490 90 GDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTL----HK 165 (323)
Q Consensus 90 ~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~----~~ 165 (323)
+++++||+||||++.+++|.+.+..++..+....... ..++|++++|||+++.........+..+........ ..
T Consensus 225 ~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~-~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (563)
T 3i5x_A 225 RFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKS-ADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPE 303 (563)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSC-TTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCS
T ss_pred ccceEEEEeCHHHHhccchHHHHHHHHHhhhhccccC-ccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCcc
Confidence 8899999999999999999999999988776543211 235699999999999888777766665443332211 11
Q ss_pred ccccceeeEEeccCChhHHHHHHH----HhccCCCCCCeEEEEecCcccHHHHHHHHhhC---CCeeEEecCCCCHHHHH
Q 047490 166 KIASARHDFIKLSGSENKLEALLQ----VLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN---QISTVNYHGEVPAQERV 238 (323)
Q Consensus 166 ~~~~~~~~~~~~~~~~~k~~~l~~----~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~r~ 238 (323)
....+.+.+........+...+.. .+... ..+.++||||++++.++.+++.|++. +..+..+||+|++.+|.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~ 382 (563)
T 3i5x_A 304 AHERIDQSVVISEKFANSIFAAVEHIKKQIKER-DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRT 382 (563)
T ss_dssp SCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHT-TTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHH
T ss_pred ccccCceEEEECchhHhhHHHHHHHHHHHHhhc-CCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHH
Confidence 222333444444433344333333 33221 35679999999999999999999876 88999999999999999
Q ss_pred HHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHH
Q 047490 239 ENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317 (323)
Q Consensus 239 ~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~ 317 (323)
.+++.|++ |+.+|||||+++++|+|+ ++++||++++|.+...|.||+||+||.|+.|.++++++..|...++.+++.
T Consensus 383 ~~~~~f~~--g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~ 460 (563)
T 3i5x_A 383 SLVKRFKK--DESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDA 460 (563)
T ss_dssp HHHHHHHH--CSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHH
T ss_pred HHHHHHhc--CCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHH
Confidence 99999999 999999999999999999 899999999999999999999999999999999999999999999998876
Q ss_pred HH
Q 047490 318 IR 319 (323)
Q Consensus 318 l~ 319 (323)
.+
T Consensus 461 ~~ 462 (563)
T 3i5x_A 461 KN 462 (563)
T ss_dssp HC
T ss_pred hC
Confidence 54
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-41 Score=291.52 Aligned_cols=280 Identities=31% Similarity=0.525 Sum_probs=229.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEe
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLV 96 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vI 96 (323)
+.++||++|+++|+.|+.+.++++....+.++..++|+.........+.+ ++|+|+||+++.+.+......+.+++++|
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~iV 134 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRN-ADIVVATPGRLLDLWSKGVIDLSSFEIVI 134 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTT-CSEEEECHHHHHHHHHTTSCCGGGCSEEE
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCC-CCEEEECHHHHHHHHHcCCcchhhCcEEE
Confidence 67899999999999999999999988878899999888765554444443 79999999999999888777788999999
Q ss_pred ecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEe
Q 047490 97 LDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIK 176 (323)
Q Consensus 97 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (323)
+||+|++.++++...+..++...... .+++++|||+++.....+...+..+..+... .......+.+..
T Consensus 135 iDEah~~~~~~~~~~~~~~~~~~~~~--------~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 203 (337)
T 2z0m_A 135 IDEADLMFEMGFIDDIKIILAQTSNR--------KITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVH 203 (337)
T ss_dssp EESHHHHHHTTCHHHHHHHHHHCTTC--------SEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEE
T ss_pred EEChHHhhccccHHHHHHHHhhCCcc--------cEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEE
Confidence 99999999988888888887766543 3889999999999888888877766554322 223334444554
Q ss_pred ccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEE
Q 047490 177 LSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256 (323)
Q Consensus 177 ~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~ 256 (323)
....... ..+.+.. ..++++||||++.+.++.+++.|+ .+..+||+++..+|.+++++|++ |+.+||||
T Consensus 204 ~~~~~~~---~~~~~~~--~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~--~~~~vlv~ 272 (337)
T 2z0m_A 204 VKDDWRS---KVQALRE--NKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFRE--GEYDMLIT 272 (337)
T ss_dssp CSSSSHH---HHHHHHT--CCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHT--TSCSEEEE
T ss_pred eChHHHH---HHHHHHh--CCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHc--CCCcEEEE
Confidence 4433222 2233333 366899999999999999999887 57889999999999999999999 99999999
Q ss_pred ecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHh
Q 047490 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRK 320 (323)
Q Consensus 257 t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~ 320 (323)
|+++++|+|+ ++++||++++|+|...|.||+||+||.|+.|.+++++. .|...++.+++.+++
T Consensus 273 T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~~ 336 (337)
T 2z0m_A 273 TDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQK 336 (337)
T ss_dssp CHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC-----
T ss_pred cCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhcc
Confidence 9999999999 99999999999999999999999999999999999999 899999999888764
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-42 Score=312.56 Aligned_cols=292 Identities=26% Similarity=0.434 Sum_probs=105.5
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHhcccc-ceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHc-CCCCCCC
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHA-RFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIED-GNMVYGD 91 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~-~~~~~~~ 91 (323)
..+++++|||+||++|+.|+.+.++++.... ++.+....++....... ..+++|+|+||+++.+++.+ ....+++
T Consensus 159 ~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 235 (479)
T 3fmp_B 159 ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKK 235 (479)
T ss_dssp TSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCCCCGGG
T ss_pred cCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccc---cCCCCEEEECchHHHHHHHhcCCcCccc
Confidence 3556799999999999999999999887643 46666666665443322 33568999999999998866 3456789
Q ss_pred CcEEeecchhhhhc-CCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccc
Q 047490 92 IKYLVLDEADTMFD-RGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASA 170 (323)
Q Consensus 92 ~~~vIiDE~h~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (323)
+++||+||+|++.+ .++......+...+.. +.|++++|||+++.........+..+..+...........+
T Consensus 236 ~~~iViDEah~~~~~~~~~~~~~~i~~~~~~--------~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 307 (479)
T 3fmp_B 236 IKVFVLDEADVMIATQGHQDQSIRIQRMLPR--------NCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTI 307 (479)
T ss_dssp CCEEEECCHHHHHTSTTHHHHHHHHHTTSCT--------TSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC---------
T ss_pred CCEEEEECHHHHhhcCCcHHHHHHHHhhCCc--------cceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCc
Confidence 99999999999986 4566666666655543 34999999999999988888888777666655555555556
Q ss_pred eeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCC
Q 047490 171 RHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250 (323)
Q Consensus 171 ~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~ 250 (323)
.+.+........+...+...+... .+.++||||+++..++.+++.|...+..+..+||+++..+|..+++.|++ |+
T Consensus 308 ~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~--g~ 383 (479)
T 3fmp_B 308 KQYYVLCSSRDEKFQALCNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFRE--GK 383 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEEEeCCHHHHHHHHHHHHhhc--cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHc--CC
Confidence 666666665566777777777653 45799999999999999999999999999999999999999999999999 99
Q ss_pred CCEEEEecccccccCC-CCCEEEEcCCCC------CchhhhhhhcccccCCCcceEEEEeeCCc-HHHHHHHHHHHHh
Q 047490 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPL------NSIDYLHRTGRTARMGAKGKVTSLVAKKD-VLLADRIEEAIRK 320 (323)
Q Consensus 251 ~~ilv~t~~~~~Gid~-~~~~vi~~~~p~------s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~-~~~~~~i~~~l~~ 320 (323)
.+|||||+++++|+|+ ++++||++|+|. +...|.||+||+||.|+.|.++++++..+ ...++.+++.++.
T Consensus 384 ~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~ 461 (479)
T 3fmp_B 384 EKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNK 461 (479)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCC
Confidence 9999999999999999 999999999994 66899999999999999999999998765 7778888877754
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-39 Score=296.56 Aligned_cols=283 Identities=18% Similarity=0.252 Sum_probs=218.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccc------cCCCCCEEEeChHHHH------HHHHc
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS------LNNPIDMVVGTPGRIL------QHIED 84 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~Iii~Tp~~l~------~~~~~ 84 (323)
++++|||+|+++|+.|+.+.++++ ++.+..+.|+......... ...+++|+|+||+++. +.+..
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~ 159 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK 159 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh
Confidence 458999999999999999999987 5688888888655433221 2456899999999874 22222
Q ss_pred CCCCCCCCcEEeecchhhhhcCC--ChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccc
Q 047490 85 GNMVYGDIKYLVLDEADTMFDRG--FGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTST 162 (323)
Q Consensus 85 ~~~~~~~~~~vIiDE~h~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~ 162 (323)
...+.+++++|+||||++.+++ |.+.+..+. .+.... .+.+++++|||+++.....+...+..........
T Consensus 160 -~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~-~l~~~~-----~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~ 232 (591)
T 2v1x_A 160 -AYEARRFTRIAVDEVHCCSQWGHDFRPDYKALG-ILKRQF-----PNASLIGLTATATNHVLTDAQKILCIEKCFTFTA 232 (591)
T ss_dssp -HHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGG-HHHHHC-----TTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC
T ss_pred -hhhccCCcEEEEECcccccccccccHHHHHHHH-HHHHhC-----CCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec
Confidence 2346789999999999999887 777665421 111111 1349999999999988777776665432221111
Q ss_pred cccccccceeeEEeccC-ChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHH
Q 047490 163 LHKKIASARHDFIKLSG-SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENL 241 (323)
Q Consensus 163 ~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~ 241 (323)
....+++...+..... ...+...+.+.+... ..+.++||||++++.++.+++.|+..+..+..+||+|+..+|..++
T Consensus 233 -~~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~-~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~ 310 (591)
T 2v1x_A 233 -SFNRPNLYYEVRQKPSNTEDFIEDIVKLINGR-YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVH 310 (591)
T ss_dssp -CCCCTTEEEEEEECCSSHHHHHHHHHHHHTTT-TTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHH
T ss_pred -CCCCcccEEEEEeCCCcHHHHHHHHHHHHHHh-ccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHH
Confidence 1122223222222221 234667777877653 2568999999999999999999999999999999999999999999
Q ss_pred HhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHH
Q 047490 242 NKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314 (323)
Q Consensus 242 ~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i 314 (323)
++|++ |+.+|||||+++++|+|+ ++++||++++|.|...|.|++||+||.|++|.|+++++..|...++.+
T Consensus 311 ~~F~~--g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~ 382 (591)
T 2v1x_A 311 RKWSA--NEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSM 382 (591)
T ss_dssp HHHHT--TSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred HHHHc--CCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHH
Confidence 99999 999999999999999999 999999999999999999999999999999999999998887665554
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-39 Score=290.16 Aligned_cols=279 Identities=19% Similarity=0.235 Sum_probs=213.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccc----ccCCCCCEEEeChHHHHHHHHcCCCCCCCC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQED----SLNNPIDMVVGTPGRILQHIEDGNMVYGDI 92 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~ 92 (323)
+.++||++|+++|+.|+.+.++++ ++.+..++++........ ...+.++|+++||+++........+...++
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~ 140 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNP 140 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCE
T ss_pred CCCEEEECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCC
Confidence 357999999999999999999886 567777777755433221 223568999999999853211112234789
Q ss_pred cEEeecchhhhhcCC--ChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhc--Cceeeeccccccccc
Q 047490 93 KYLVLDEADTMFDRG--FGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQ--GIAHLRTSTLHKKIA 168 (323)
Q Consensus 93 ~~vIiDE~h~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 168 (323)
+++|+||+|++.+++ |.+.+..+..... .. .+.+++++|||+++.....+...+. .+....... ..+
T Consensus 141 ~~vViDEaH~i~~~g~~fr~~~~~l~~l~~-~~-----~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~---~r~ 211 (523)
T 1oyw_A 141 VLLAVDEAHCISQWGHDFRPEYAALGQLRQ-RF-----PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSF---DRP 211 (523)
T ss_dssp EEEEESSGGGGCTTSSCCCHHHHGGGGHHH-HC-----TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCC---CCT
T ss_pred CEEEEeCccccCcCCCccHHHHHHHHHHHH-hC-----CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCC---CCC
Confidence 999999999999877 6666655432222 11 1348999999999887665554443 222221111 112
Q ss_pred cceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccC
Q 047490 169 SARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNED 248 (323)
Q Consensus 169 ~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 248 (323)
++.. .+.....+...+.+.+... .++++||||++++.++.+++.|+..+..+..+||+|+.++|..+++.|++
T Consensus 212 ~l~~---~v~~~~~~~~~l~~~l~~~--~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~-- 284 (523)
T 1oyw_A 212 NIRY---MLMEKFKPLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQR-- 284 (523)
T ss_dssp TEEE---EEEECSSHHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT--
T ss_pred ceEE---EEEeCCCHHHHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHc--
Confidence 2222 2222355777888888764 56799999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHH
Q 047490 249 GDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIE 315 (323)
Q Consensus 249 g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~ 315 (323)
|+.+|||||+++++|+|+ ++++||++++|.|...|.|++||+||.|++|.++++++..|...++.+.
T Consensus 285 g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~ 352 (523)
T 1oyw_A 285 DDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCL 352 (523)
T ss_dssp TSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHH
T ss_pred CCCeEEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHH
Confidence 999999999999999999 9999999999999999999999999999999999999988876655544
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-39 Score=286.35 Aligned_cols=282 Identities=18% Similarity=0.278 Sum_probs=213.3
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccC---CccccccCC-CCCEEEeChHHHHHHHHcCCCCCC
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRL---RPQEDSLNN-PIDMVVGTPGRILQHIEDGNMVYG 90 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~Iii~Tp~~l~~~~~~~~~~~~ 90 (323)
.+++++|||+||++|+.|+.+.++++.. .++++..++|+... ..+...+.. .++|+|+||+++.+.+.. ..+.
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~ 138 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQK 138 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTC
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccc
Confidence 4578999999999999999999999987 78899999999776 223333333 489999999999887764 5567
Q ss_pred CCcEEeecchhhhhc-----------CCChhh-HHHHHhhhcc--ccC-CCCCCCceEEEEEee-cchhhHHHHHHHhcC
Q 047490 91 DIKYLVLDEADTMFD-----------RGFGPD-IRKFLVPLKN--RAS-KPNGQGFQTVLVSAT-MTKAVQKLVDEECQG 154 (323)
Q Consensus 91 ~~~~vIiDE~h~~~~-----------~~~~~~-~~~i~~~~~~--~~~-~~~~~~~~~i~~sat-~~~~~~~~~~~~~~~ 154 (323)
++++||+||+|++.. .++.+. +..++..++. ... .....+.+++++||| .+......+......
T Consensus 139 ~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~ 218 (414)
T 3oiy_A 139 RFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN 218 (414)
T ss_dssp CCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS
T ss_pred cccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc
Confidence 899999999998764 556666 6777766641 000 001134599999999 454444333222222
Q ss_pred ceeeeccccccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeE-EecCCCC
Q 047490 155 IAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTV-NYHGEVP 233 (323)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~ 233 (323)
. ...........+.+.+... ++...+.+++.. .++++||||+++..++.+++.|+..+..+. .+||.
T Consensus 219 ~---~~~~~~~~~~~i~~~~~~~----~~~~~l~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~-- 286 (414)
T 3oiy_A 219 F---TVGRLVSVARNITHVRISS----RSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-- 286 (414)
T ss_dssp C---CSSCCCCCCCSEEEEEESS----CCHHHHHHHHHH---HCSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH--
T ss_pred c---CcCccccccccchheeecc----CHHHHHHHHHHH---cCCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc--
Confidence 1 1111222333444444433 244555666655 247999999999999999999999999998 88985
Q ss_pred HHHHHHHHHhccccCCCCCEEEE----ecccccccCC-C-CCEEEEcCCC--CCchhhhhhhcccccCC----CcceEEE
Q 047490 234 AQERVENLNKFKNEDGDCPTLVC----TDLAARGLDL-D-VDHVIMFDFP--LNSIDYLHRTGRTARMG----AKGKVTS 301 (323)
Q Consensus 234 ~~~r~~~~~~f~~~~g~~~ilv~----t~~~~~Gid~-~-~~~vi~~~~p--~s~~~~~Q~~GR~~R~~----~~g~~~~ 301 (323)
+|+ ++.|++ |+.+|||| |+++++|+|+ + +++||++++| .+...|.||+||+||.| ..|.+++
T Consensus 287 --~r~--~~~f~~--g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~ 360 (414)
T 3oiy_A 287 --EKN--FEDFKV--GKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVI 360 (414)
T ss_dssp --HHH--HHHHHT--TSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEE
T ss_pred --chH--HHHHhC--CCCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEE
Confidence 343 999999 99999999 9999999999 8 9999999999 99999999999999987 4789998
Q ss_pred EeeCCcHHHHHHHHHHHH
Q 047490 302 LVAKKDVLLADRIEEAIR 319 (323)
Q Consensus 302 ~~~~~~~~~~~~i~~~l~ 319 (323)
++ .|...++.+++.++
T Consensus 361 ~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 361 FE--EDEEIFESLKTRLL 376 (414)
T ss_dssp EC--CCHHHHHHHHHHHH
T ss_pred EE--ccHHHHHHHHHHhc
Confidence 88 67888888888877
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-38 Score=291.56 Aligned_cols=286 Identities=17% Similarity=0.251 Sum_probs=163.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCC-CCCCCcEE
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNM-VYGDIKYL 95 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~-~~~~~~~v 95 (323)
++++|||+||++|+.|+.+.+++++...++++..++|+.........+..+++|+|+||+++.+.+..... .+.++++|
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~v 134 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLM 134 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEE
Confidence 78999999999999999999999998888999999999876665555555689999999999999988766 78999999
Q ss_pred eecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchh----hHHHHH------HHhcCceeeeccccc-
Q 047490 96 VLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKA----VQKLVD------EECQGIAHLRTSTLH- 164 (323)
Q Consensus 96 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~----~~~~~~------~~~~~~~~~~~~~~~- 164 (323)
|+||||++.+++. +..++..+............+++++|||++.. ...+.. ..+... .+......
T Consensus 135 ViDEah~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~~~~~~~ 210 (556)
T 4a2p_A 135 IFDECHNTTGNHP---YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQ-AISTVRENI 210 (556)
T ss_dssp EEETGGGCSTTSH---HHHHHHHHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCS-EEECCCTTH
T ss_pred EEECCcccCCcch---HHHHHHHHHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCe-Eecchhcch
Confidence 9999999987652 33332222111000111245899999999532 111111 111100 00000000
Q ss_pred ----cccccceeeEEe----------------------------------------------------------------
Q 047490 165 ----KKIASARHDFIK---------------------------------------------------------------- 176 (323)
Q Consensus 165 ----~~~~~~~~~~~~---------------------------------------------------------------- 176 (323)
.........+..
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 290 (556)
T 4a2p_A 211 QELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLED 290 (556)
T ss_dssp HHHHHHTCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---C
T ss_pred HHHHhcCCCCceEEEEcCCCcCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccc
Confidence 000000000000
Q ss_pred ----------------------------------------------------------------------------ccCC
Q 047490 177 ----------------------------------------------------------------------------LSGS 180 (323)
Q Consensus 177 ----------------------------------------------------------------------------~~~~ 180 (323)
....
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 370 (556)
T 4a2p_A 291 KEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNE 370 (556)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSC
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCC
Confidence 0012
Q ss_pred hhHHHHHHHHhccCC--CCCCeEEEEecCcccHHHHHHHHhhC------------CCeeEEecCCCCHHHHHHHHHhccc
Q 047490 181 ENKLEALLQVLEPSL--SKGNKVMVFCNTLNSSRAVDHFLNEN------------QISTVNYHGEVPAQERVENLNKFKN 246 (323)
Q Consensus 181 ~~k~~~l~~~l~~~~--~~~~~~lvf~~~~~~~~~l~~~l~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~ 246 (323)
..|...|.+.+.+.. ..+.++||||+++.+++.+++.|++. |.....+||+|+..+|..++++|++
T Consensus 371 ~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~ 450 (556)
T 4a2p_A 371 NPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT 450 (556)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC---------------------------
T ss_pred ChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcc
Confidence 446777777776543 46789999999999999999999875 4455567888999999999999996
Q ss_pred cCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHH
Q 047490 247 EDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309 (323)
Q Consensus 247 ~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 309 (323)
+|+++|||||+++++|+|+ ++++||+||+|+|+..|.||+|| ||. +.|.++++++..+..
T Consensus 451 -~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 451 -SKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 511 (556)
T ss_dssp ----CCEEEEEC-----------CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHH
T ss_pred -cCceEEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchH
Confidence 5778899999999999999 99999999999999999999999 998 889999999987654
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-38 Score=287.66 Aligned_cols=291 Identities=18% Similarity=0.252 Sum_probs=190.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCC-CCCCCcEE
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNM-VYGDIKYL 95 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~-~~~~~~~v 95 (323)
++++|||+||++|+.|+.+.+++++...++++..++|+.........+..+++|+|+||+++...+..... .+.++++|
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~v 131 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLM 131 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEE
Confidence 78999999999999999999999998888999999999876665555555689999999999999988766 68899999
Q ss_pred eecchhhhhcCCChhhHHHHH-hhhccccCCCCCCCceEEEEEeecchhh-------HHH---HHHHhcCceeeeccccc
Q 047490 96 VLDEADTMFDRGFGPDIRKFL-VPLKNRASKPNGQGFQTVLVSATMTKAV-------QKL---VDEECQGIAHLRTSTLH 164 (323)
Q Consensus 96 IiDE~h~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~i~~sat~~~~~-------~~~---~~~~~~~~~~~~~~~~~ 164 (323)
|+||||++.+.+ + +..++ ..+............+++++|||+.... ... +...+... .+......
T Consensus 132 ViDEah~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~ 207 (555)
T 3tbk_A 132 IFDECHNTSKNH--P-YNQIMFRYLDHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDAS-VIATVRDN 207 (555)
T ss_dssp EETTGGGCSTTC--H-HHHHHHHHHHHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCS-EEECCCSC
T ss_pred EEECccccCCcc--h-HHHHHHHHHHhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCe-eeeccccC
Confidence 999999997754 2 33332 2222222222233569999999995421 111 11111110 00000000
Q ss_pred -----cccccceeeEE----------------------------------------------------------------
Q 047490 165 -----KKIASARHDFI---------------------------------------------------------------- 175 (323)
Q Consensus 165 -----~~~~~~~~~~~---------------------------------------------------------------- 175 (323)
.........+.
T Consensus 208 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 287 (555)
T 3tbk_A 208 VAELEQVVYKPQKISRKVASRTSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQM 287 (555)
T ss_dssp HHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHhhcCCCceEEEEecCcccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhc
Confidence 00000000000
Q ss_pred -----------------------------------------------------------------------------ecc
Q 047490 176 -----------------------------------------------------------------------------KLS 178 (323)
Q Consensus 176 -----------------------------------------------------------------------------~~~ 178 (323)
...
T Consensus 288 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (555)
T 3tbk_A 288 ADKEEESRVCKALFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPS 367 (555)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGG
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCC
Confidence 000
Q ss_pred CChhHHHHHHHHhccCC--CCCCeEEEEecCcccHHHHHHHHhhCC------------CeeEEecCCCCHHHHHHHHHhc
Q 047490 179 GSENKLEALLQVLEPSL--SKGNKVMVFCNTLNSSRAVDHFLNENQ------------ISTVNYHGEVPAQERVENLNKF 244 (323)
Q Consensus 179 ~~~~k~~~l~~~l~~~~--~~~~~~lvf~~~~~~~~~l~~~l~~~~------------~~~~~~~~~~~~~~r~~~~~~f 244 (323)
....|...+.+++.... ..+.++||||+++.+++.+++.|+..+ .....+||+|+..+|.+++++|
T Consensus 368 ~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F 447 (555)
T 3tbk_A 368 NENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAF 447 (555)
T ss_dssp GCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC----------------------
T ss_pred cCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHH
Confidence 12446667777775533 345899999999999999999998763 2344556799999999999999
Q ss_pred cccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHH
Q 047490 245 KNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314 (323)
Q Consensus 245 ~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i 314 (323)
++ +|+.+|||||+++++|+|+ ++++||+||+|+|+..|.||+|| ||. +.|.++++++..+......+
T Consensus 448 ~~-~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 448 RA-SGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp -----CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred hc-CCCeeEEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 96 4778999999999999999 99999999999999999999999 888 89999999998877655555
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=275.05 Aligned_cols=283 Identities=19% Similarity=0.285 Sum_probs=205.6
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcE
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKY 94 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~ 94 (323)
.++.++||++|+++|+.||.+++++++.....++..++|+.......... .+++|+|+||+.+...+......+.++++
T Consensus 50 ~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~-~~~~ivv~T~~~l~~~~~~~~~~~~~~~~ 128 (494)
T 1wp9_A 50 KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAW-ARAKVIVATPQTIENDLLAGRISLEDVSL 128 (494)
T ss_dssp HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHH-HHCSEEEECHHHHHHHHHTTSCCTTSCSE
T ss_pred cCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhc-cCCCEEEecHHHHHHHHhcCCcchhhceE
Confidence 45779999999999999999999999854456888888876544332222 24799999999999988887778899999
Q ss_pred EeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHH---HHHHhcCceeeeccccc---cccc
Q 047490 95 LVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKL---VDEECQGIAHLRTSTLH---KKIA 168 (323)
Q Consensus 95 vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~ 168 (323)
||+||||++.+......+...+..... ..+++++||||.+..... ................. ....
T Consensus 129 vIiDEaH~~~~~~~~~~~~~~~~~~~~--------~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~ 200 (494)
T 1wp9_A 129 IVFDEAHRAVGNYAYVFIAREYKRQAK--------NPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVK 200 (494)
T ss_dssp EEEETGGGCSTTCHHHHHHHHHHHHCS--------SCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCC
T ss_pred EEEECCcccCCCCcHHHHHHHHHhcCC--------CCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcC
Confidence 999999998754322222222222211 238999999997432222 21111100000000000 0000
Q ss_pred cceeeE--------------------------------------------------------------------------
Q 047490 169 SARHDF-------------------------------------------------------------------------- 174 (323)
Q Consensus 169 ~~~~~~-------------------------------------------------------------------------- 174 (323)
.....+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (494)
T 1wp9_A 201 GIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMAL 280 (494)
T ss_dssp CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHH
T ss_pred CCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHH
Confidence 000000
Q ss_pred -------------------------------------------------------EeccCChhHHHHHHHHhccCC--CC
Q 047490 175 -------------------------------------------------------IKLSGSENKLEALLQVLEPSL--SK 197 (323)
Q Consensus 175 -------------------------------------------------------~~~~~~~~k~~~l~~~l~~~~--~~ 197 (323)
........|...+.+++.... ..
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~ 360 (494)
T 1wp9_A 281 KLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQ 360 (494)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCC
Confidence 000023457777777777644 46
Q ss_pred CCeEEEEecCcccHHHHHHHHhhCCCeeEEecC--------CCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CC
Q 047490 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHG--------EVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DV 268 (323)
Q Consensus 198 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~--------~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~ 268 (323)
+.++||||++...++.+++.|+..++.+..+|| +++..+|.+++++|++ |+++|||||+++++|+|+ .+
T Consensus 361 ~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~--~~~~vLv~T~~~~~Gldl~~~ 438 (494)
T 1wp9_A 361 NSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFAR--GEFNVLVATSVGEEGLDVPEV 438 (494)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHH--TSCSEEEECGGGGGGGGSTTC
T ss_pred CCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhc--CCceEEEECCccccCCCchhC
Confidence 789999999999999999999999999999999 9999999999999999 999999999999999999 99
Q ss_pred CEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHH
Q 047490 269 DHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309 (323)
Q Consensus 269 ~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 309 (323)
++||++++|+|+..|.||+||+||.|+ |.++.+++..+..
T Consensus 439 ~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~e 478 (494)
T 1wp9_A 439 DLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRD 478 (494)
T ss_dssp CEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHH
T ss_pred CEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHH
Confidence 999999999999999999999999998 9999999987653
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=288.47 Aligned_cols=286 Identities=18% Similarity=0.239 Sum_probs=168.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCC-CCCCCcEE
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNM-VYGDIKYL 95 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~-~~~~~~~v 95 (323)
++++|||+|+++|+.|+.+.+++++...++++..++|+.........+..+++|+|+||+++.+.+..... .++++++|
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~i 375 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLM 375 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEE
Confidence 78999999999999999999999998888999999999876666555556789999999999999887766 68899999
Q ss_pred eecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhh-------HHHHH---HHhcCceeeecccc--
Q 047490 96 VLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAV-------QKLVD---EECQGIAHLRTSTL-- 163 (323)
Q Consensus 96 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~-------~~~~~---~~~~~~~~~~~~~~-- 163 (323)
|+||||++...+. +..++..+............+++++|||+.... ...+. ..+.... +.....
T Consensus 376 ViDEaH~~~~~~~---~~~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~-i~~~~~~~ 451 (797)
T 4a2q_A 376 IFDECHNTTGNHP---YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQA-ISTVRENI 451 (797)
T ss_dssp EETTGGGCSTTSH---HHHHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSE-EECCCTTH
T ss_pred EEECccccCCCcc---HHHHHHHHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcE-EecccccH
Confidence 9999999876432 344332222211111122458999999995311 01111 1111000 000000
Q ss_pred ---ccccccceeeEE-----------------------------------------------------------------
Q 047490 164 ---HKKIASARHDFI----------------------------------------------------------------- 175 (323)
Q Consensus 164 ---~~~~~~~~~~~~----------------------------------------------------------------- 175 (323)
..........+.
T Consensus 452 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 531 (797)
T 4a2q_A 452 QELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLED 531 (797)
T ss_dssp HHHHHHSCCCCCEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSS
T ss_pred HHHHHhcCCCceEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccc
Confidence 000000000000
Q ss_pred ---------------------------------------------------------------------------eccCC
Q 047490 176 ---------------------------------------------------------------------------KLSGS 180 (323)
Q Consensus 176 ---------------------------------------------------------------------------~~~~~ 180 (323)
.....
T Consensus 532 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~ 611 (797)
T 4a2q_A 532 KEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNE 611 (797)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 00012
Q ss_pred hhHHHHHHHHhccCC--CCCCeEEEEecCcccHHHHHHHHhhC------------CCeeEEecCCCCHHHHHHHHHhccc
Q 047490 181 ENKLEALLQVLEPSL--SKGNKVMVFCNTLNSSRAVDHFLNEN------------QISTVNYHGEVPAQERVENLNKFKN 246 (323)
Q Consensus 181 ~~k~~~l~~~l~~~~--~~~~~~lvf~~~~~~~~~l~~~l~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~ 246 (323)
..|...|.+.+...+ ..+.++||||+++..++.+++.|+.. |.....+||+|+..+|..++++|++
T Consensus 612 ~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~ 691 (797)
T 4a2q_A 612 NPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT 691 (797)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC--------------------------
T ss_pred ChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhc
Confidence 446667777776532 45689999999999999999999763 4455667899999999999999996
Q ss_pred cCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHH
Q 047490 247 EDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309 (323)
Q Consensus 247 ~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 309 (323)
+|.++|||||+++++|+|+ ++++||+||+|+|+..|.||+|| ||. +.|.++++++..+..
T Consensus 692 -~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 692 -SKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (797)
T ss_dssp ---CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHHH
T ss_pred -cCCceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHH
Confidence 4788999999999999999 99999999999999999999999 999 899999999887654
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-36 Score=285.04 Aligned_cols=292 Identities=17% Similarity=0.265 Sum_probs=178.9
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCC-CCCCCcEE
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNM-VYGDIKYL 95 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~-~~~~~~~v 95 (323)
++++|||+||++|+.|+.+.+++++...++++..++|+.........+..+++|+|+||++|.+.+..... .++++++|
T Consensus 61 ~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~v 140 (696)
T 2ykg_A 61 KGKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLM 140 (696)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEE
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEE
Confidence 47999999999999999999999998778899999999876655555545689999999999999988766 68899999
Q ss_pred eecchhhhhcCCChhhHHHHHh-hhccccCCCCCCCceEEEEEeecch-------hhHHHHHHHh---------------
Q 047490 96 VLDEADTMFDRGFGPDIRKFLV-PLKNRASKPNGQGFQTVLVSATMTK-------AVQKLVDEEC--------------- 152 (323)
Q Consensus 96 IiDE~h~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~~~i~~sat~~~-------~~~~~~~~~~--------------- 152 (323)
|+||||++.+.. .+..++. .+............+++++|||+.. .....+...+
T Consensus 141 ViDEaH~~~~~~---~~~~i~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~ 217 (696)
T 2ykg_A 141 IFDECHNTSKQH---PYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNL 217 (696)
T ss_dssp EEETGGGCSTTC---HHHHHHHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTH
T ss_pred EEeCCCcccCcc---cHHHHHHHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccch
Confidence 999999987543 2333332 2221111111234599999999971 2111111111
Q ss_pred -------cCceeeecc-cc------c------------------------------------------------------
Q 047490 153 -------QGIAHLRTS-TL------H------------------------------------------------------ 164 (323)
Q Consensus 153 -------~~~~~~~~~-~~------~------------------------------------------------------ 164 (323)
..+...... .. .
T Consensus 218 ~~l~~~~~~p~~~~~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (696)
T 2ykg_A 218 EELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMP 297 (696)
T ss_dssp HHHHHHSCCCEEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC----
T ss_pred HHHHhhcCCCceeEEecCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcc
Confidence 000000000 00 0
Q ss_pred --------------------------------------------------cccccceeeEE---------------eccC
Q 047490 165 --------------------------------------------------KKIASARHDFI---------------KLSG 179 (323)
Q Consensus 165 --------------------------------------------------~~~~~~~~~~~---------------~~~~ 179 (323)
.....+.+.+. ....
T Consensus 298 ~~~~~~~~~~~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 377 (696)
T 2ykg_A 298 DKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSN 377 (696)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGG
T ss_pred cchhhhHHHHHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 00000000000 0001
Q ss_pred ChhHHHHHHHHhccCC--CCCCeEEEEecCcccHHHHHHHHhhCC----CeeEEe--------cCCCCHHHHHHHHHhcc
Q 047490 180 SENKLEALLQVLEPSL--SKGNKVMVFCNTLNSSRAVDHFLNENQ----ISTVNY--------HGEVPAQERVENLNKFK 245 (323)
Q Consensus 180 ~~~k~~~l~~~l~~~~--~~~~~~lvf~~~~~~~~~l~~~l~~~~----~~~~~~--------~~~~~~~~r~~~~~~f~ 245 (323)
...|...|.+++.... ..+.++||||+++.+++.+++.|+..+ +.+..+ ||+|+..+|.+++++|+
T Consensus 378 ~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~ 457 (696)
T 2ykg_A 378 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 457 (696)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC--------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHH
Confidence 3457777777776542 356799999999999999999999887 777777 55999999999999999
Q ss_pred ccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHH
Q 047490 246 NEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314 (323)
Q Consensus 246 ~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i 314 (323)
+ +|+++|||||+++++|+|+ ++++||+||+|+|...|.||+|| ||. +.|.++.+++..+......+
T Consensus 458 ~-~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 458 A-SGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp ----CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHH
T ss_pred h-cCCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHH
Confidence 4 3788999999999999999 99999999999999999999999 998 78999999998777554444
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-35 Score=280.50 Aligned_cols=274 Identities=17% Similarity=0.237 Sum_probs=207.6
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEE
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYL 95 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~v 95 (323)
++.++||++|+++|+.|+++.+++++. .+..++|+.... .+++|+|+||++|.+++.++...++++++|
T Consensus 128 ~g~rvL~l~PtkaLa~Q~~~~l~~~~~----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lV 196 (1010)
T 2xgj_A 128 NKQRVIYTSPIKALSNQKYRELLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWV 196 (1010)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHHS----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEE
T ss_pred cCCeEEEECChHHHHHHHHHHHHHHhC----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEE
Confidence 468999999999999999999999875 577777775432 247899999999999988887788999999
Q ss_pred eecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhh--HHHHHHHhcCceeeeccccccccccceee
Q 047490 96 VLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAV--QKLVDEECQGIAHLRTSTLHKKIASARHD 173 (323)
Q Consensus 96 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (323)
|+||+|++.+.+++..+..++..++. +++++++|||+++.. ..++......+..+..... ......++
T Consensus 197 ViDEaH~l~d~~rg~~~e~il~~l~~--------~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~--rp~pl~~~ 266 (1010)
T 2xgj_A 197 IFDEVHYMRDKERGVVWEETIILLPD--------KVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNF--RPTPLQHY 266 (1010)
T ss_dssp EEETGGGGGCTTTHHHHHHHHHHSCT--------TCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECC--CSSCEEEE
T ss_pred EEechhhhcccchhHHHHHHHHhcCC--------CCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCC--CcccceEE
Confidence 99999999998888888888877653 349999999998653 3444444333332221111 11111122
Q ss_pred EEecc---------CC---------------------------------------------hhHHHHHHHHhccCCCCCC
Q 047490 174 FIKLS---------GS---------------------------------------------ENKLEALLQVLEPSLSKGN 199 (323)
Q Consensus 174 ~~~~~---------~~---------------------------------------------~~k~~~l~~~l~~~~~~~~ 199 (323)
+.... .. ...+..++..+... ...
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~--~~~ 344 (1010)
T 2xgj_A 267 LFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK--KYN 344 (1010)
T ss_dssp EEETTSSCCEEEECTTCCBCHHHHHHHHHTCC------------------------------CHHHHHHHHHHHH--TCC
T ss_pred EEecCCcceeeeeccccccchHHHHHHHHHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhc--CCC
Confidence 11100 00 11223344444321 345
Q ss_pred eEEEEecCcccHHHHHHHHhhCCC---------------------------------------eeEEecCCCCHHHHHHH
Q 047490 200 KVMVFCNTLNSSRAVDHFLNENQI---------------------------------------STVNYHGEVPAQERVEN 240 (323)
Q Consensus 200 ~~lvf~~~~~~~~~l~~~l~~~~~---------------------------------------~~~~~~~~~~~~~r~~~ 240 (323)
++||||+++..|+.+++.|...++ ++..+||+|++.+|+.+
T Consensus 345 ~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~v 424 (1010)
T 2xgj_A 345 PVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVI 424 (1010)
T ss_dssp SEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHH
T ss_pred CEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHH
Confidence 999999999999999999876433 27889999999999999
Q ss_pred HHhccccCCCCCEEEEecccccccCC-CCCEEEE----cCC----CCCchhhhhhhcccccCCC--cceEEEEeeCC-cH
Q 047490 241 LNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIM----FDF----PLNSIDYLHRTGRTARMGA--KGKVTSLVAKK-DV 308 (323)
Q Consensus 241 ~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~----~~~----p~s~~~~~Q~~GR~~R~~~--~g~~~~~~~~~-~~ 308 (323)
++.|++ |.++|||||+++++|+|+ .+++||+ ||. |.|..+|.||+||+||.|. .|.|+++++.. +.
T Consensus 425 e~~F~~--G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~ 502 (1010)
T 2xgj_A 425 EILFQE--GFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEP 502 (1010)
T ss_dssp HHHHHT--TCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCH
T ss_pred HHHHhc--CCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCH
Confidence 999999 999999999999999999 8999998 888 8899999999999999996 59999999865 55
Q ss_pred HHHHHH
Q 047490 309 LLADRI 314 (323)
Q Consensus 309 ~~~~~i 314 (323)
..+.++
T Consensus 503 ~~~~~l 508 (1010)
T 2xgj_A 503 QVAKGM 508 (1010)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=285.01 Aligned_cols=287 Identities=17% Similarity=0.226 Sum_probs=169.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCC-CCCCCcEE
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNM-VYGDIKYL 95 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~-~~~~~~~v 95 (323)
++++|||+||++|+.|+.+.++++++..++++..++|+.........+..+++|+|+||+++.+.+..... .++++++|
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~li 375 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLM 375 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEE
Confidence 78999999999999999999999998888999999999876665555555689999999999999887666 68889999
Q ss_pred eecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhh----H---HHHH-------------------
Q 047490 96 VLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAV----Q---KLVD------------------- 149 (323)
Q Consensus 96 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~----~---~~~~------------------- 149 (323)
|+||||++...+ + +..++..+............+++++|||+.... . ..+.
T Consensus 376 ViDEaH~~~~~~--~-~~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~ 452 (936)
T 4a2w_A 376 IFDECHNTTGNH--P-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQ 452 (936)
T ss_dssp EEETGGGCSTTC--H-HHHHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHH
T ss_pred EEECccccCCCc--c-HHHHHHHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHH
Confidence 999999987643 2 444433332211111122458999999995311 0 1111
Q ss_pred ---HHhcCceeeecccccccc------------------------------c----cc----------------------
Q 047490 150 ---EECQGIAHLRTSTLHKKI------------------------------A----SA---------------------- 170 (323)
Q Consensus 150 ---~~~~~~~~~~~~~~~~~~------------------------------~----~~---------------------- 170 (323)
.+...+............ . +.
T Consensus 453 ~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~ 532 (936)
T 4a2w_A 453 ELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDK 532 (936)
T ss_dssp HHHHHSCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCH
T ss_pred HHHHhccCCcceEEecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhccccc
Confidence 111111000000000000 0 00
Q ss_pred ---------------------------------------eee------------------------------EEeccCCh
Q 047490 171 ---------------------------------------RHD------------------------------FIKLSGSE 181 (323)
Q Consensus 171 ---------------------------------------~~~------------------------------~~~~~~~~ 181 (323)
... ........
T Consensus 533 ~~~~~~~~~l~~~~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~ 612 (936)
T 4a2w_A 533 EEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNEN 612 (936)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCC
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCC
Confidence 000 00000124
Q ss_pred hHHHHHHHHhccCC--CCCCeEEEEecCcccHHHHHHHHhhC------------CCeeEEecCCCCHHHHHHHHHhcccc
Q 047490 182 NKLEALLQVLEPSL--SKGNKVMVFCNTLNSSRAVDHFLNEN------------QISTVNYHGEVPAQERVENLNKFKNE 247 (323)
Q Consensus 182 ~k~~~l~~~l~~~~--~~~~~~lvf~~~~~~~~~l~~~l~~~------------~~~~~~~~~~~~~~~r~~~~~~f~~~ 247 (323)
.|...|.++|.+.. ..+.++||||+++..++.+++.|++. |.....+||+|+..+|.+++++|++
T Consensus 613 ~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~- 691 (936)
T 4a2w_A 613 PKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT- 691 (936)
T ss_dssp HHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC---------------------------
T ss_pred HHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhc-
Confidence 46677777776643 45789999999999999999999876 4455667899999999999999996
Q ss_pred CCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHH
Q 047490 248 DGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309 (323)
Q Consensus 248 ~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 309 (323)
+|+++|||||+++++|+|+ ++++||+||+|+|+..|.||+|| ||. ..|.++.+++..+..
T Consensus 692 ~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 692 SKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (936)
T ss_dssp --CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHHH
T ss_pred cCCeeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHH
Confidence 4788999999999999999 99999999999999999999999 998 789999999876554
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=286.97 Aligned_cols=273 Identities=18% Similarity=0.234 Sum_probs=204.6
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEE
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYL 95 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~v 95 (323)
++++++|++||++|+.|+++.+++++. .+..++|+... ..+++|+|+||++|.+.+.+....++++++|
T Consensus 226 ~g~rvlvl~PtraLa~Q~~~~l~~~~~----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lV 294 (1108)
T 3l9o_A 226 NKQRVIYTSPIKALSNQKYRELLAEFG----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWV 294 (1108)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHTS----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEE
T ss_pred cCCeEEEEcCcHHHHHHHHHHHHHHhC----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCccccccCCEE
Confidence 467999999999999999999999876 56677777553 3357999999999999998887778899999
Q ss_pred eecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchh--hHHHHHHHhcCceeeeccccccccccceee
Q 047490 96 VLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKA--VQKLVDEECQGIAHLRTSTLHKKIASARHD 173 (323)
Q Consensus 96 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (323)
|+||+|++.+++++..+..++..++. +++++++|||+++. ...++......+..+...... .....++
T Consensus 295 VIDEaH~l~d~~rg~~~e~ii~~l~~--------~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~r--p~pl~~~ 364 (1108)
T 3l9o_A 295 IFDEVHYMRDKERGVVWEETIILLPD--------KVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR--PTPLQHY 364 (1108)
T ss_dssp EEETGGGTTSHHHHHHHHHHHHHSCT--------TSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCC--SSCEEEE
T ss_pred EEhhhhhccccchHHHHHHHHHhcCC--------CceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC--cccceEE
Confidence 99999999988888888888877754 35999999998765 445565555443332221111 1111111
Q ss_pred EEeccC------------------------------------------------------ChhHHHHHHHHhccCCCCCC
Q 047490 174 FIKLSG------------------------------------------------------SENKLEALLQVLEPSLSKGN 199 (323)
Q Consensus 174 ~~~~~~------------------------------------------------------~~~k~~~l~~~l~~~~~~~~ 199 (323)
++.... ...++..++..+... .+.
T Consensus 365 ~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~--~~~ 442 (1108)
T 3l9o_A 365 LFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK--KYN 442 (1108)
T ss_dssp EEETTSSCCEEEEETTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHT--TCC
T ss_pred EeecCCcceeeeeccccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhc--CCC
Confidence 111000 022333444444332 456
Q ss_pred eEEEEecCcccHHHHHHHHhhCCC---------------------------------------eeEEecCCCCHHHHHHH
Q 047490 200 KVMVFCNTLNSSRAVDHFLNENQI---------------------------------------STVNYHGEVPAQERVEN 240 (323)
Q Consensus 200 ~~lvf~~~~~~~~~l~~~l~~~~~---------------------------------------~~~~~~~~~~~~~r~~~ 240 (323)
++||||+++..|+.++..|...++ ++..+||+|++.+|..+
T Consensus 443 ~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v 522 (1108)
T 3l9o_A 443 PVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVI 522 (1108)
T ss_dssp CEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHH
T ss_pred CEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHH
Confidence 999999999999999998865322 27899999999999999
Q ss_pred HHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCC--------CchhhhhhhcccccCC--CcceEEEEeeCC-cH
Q 047490 241 LNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPL--------NSIDYLHRTGRTARMG--AKGKVTSLVAKK-DV 308 (323)
Q Consensus 241 ~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~--------s~~~~~Q~~GR~~R~~--~~g~~~~~~~~~-~~ 308 (323)
++.|++ |.++|||||+++++|+|+ .+++||+++.|+ |..+|.||+||+||.| ..|.|++++... +.
T Consensus 523 ~~~F~~--G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~ 600 (1108)
T 3l9o_A 523 EILFQE--GFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEP 600 (1108)
T ss_dssp HHHHHH--TCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCH
T ss_pred HHHHhC--CCCeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCH
Confidence 999999 999999999999999999 999999876643 6667999999999999 688888888765 33
Q ss_pred HHHHH
Q 047490 309 LLADR 313 (323)
Q Consensus 309 ~~~~~ 313 (323)
..+.+
T Consensus 601 ~~~~~ 605 (1108)
T 3l9o_A 601 QVAKG 605 (1108)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33333
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-34 Score=271.55 Aligned_cols=269 Identities=20% Similarity=0.242 Sum_probs=201.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEe
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLV 96 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vI 96 (323)
+.+++|++|+++|+.|+++.++.+. ..++++...+|+....... . .+++|+|+||+++..++.+....++++++||
T Consensus 75 ~~~il~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~~--~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vI 150 (715)
T 2va8_A 75 GGKAIYVTPLRALTNEKYLTFKDWE-LIGFKVAMTSGDYDTDDAW--L-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFV 150 (715)
T ss_dssp CSEEEEECSCHHHHHHHHHHHGGGG-GGTCCEEECCSCSSSCCGG--G-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHhh-cCCCEEEEEeCCCCCchhh--c-CCCCEEEEcHHHHHHHHhCChhHhhccCEEE
Confidence 6799999999999999999996553 4578999998886654432 2 3579999999999999888766688999999
Q ss_pred ecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccccccccc-c-----
Q 047490 97 LDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIAS-A----- 170 (323)
Q Consensus 97 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----- 170 (323)
+||+|.+.+..++..+..++..++ +++++++|||+++. ..+..++..... .......+... .
T Consensus 151 iDE~H~l~~~~~~~~l~~i~~~~~---------~~~ii~lSATl~n~--~~~~~~l~~~~~-~~~~r~~~l~~~~~~~~~ 218 (715)
T 2va8_A 151 LDELHYLNDPERGPVVESVTIRAK---------RRNLLALSATISNY--KQIAKWLGAEPV-ATNWRPVPLIEGVIYPER 218 (715)
T ss_dssp ECSGGGGGCTTTHHHHHHHHHHHH---------TSEEEEEESCCTTH--HHHHHHHTCEEE-ECCCCSSCEEEEEEEECS
T ss_pred EechhhcCCcccchHHHHHHHhcc---------cCcEEEEcCCCCCH--HHHHHHhCCCcc-CCCCCCCCceEEEEecCC
Confidence 999999988788888888887776 23999999999752 223333332211 11000000000 0
Q ss_pred ---eeeEEecc-------CChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCC------------------
Q 047490 171 ---RHDFIKLS-------GSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQ------------------ 222 (323)
Q Consensus 171 ---~~~~~~~~-------~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~------------------ 222 (323)
........ ....+...+.+.+. .++++||||++++.++.+++.|.+..
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~ 294 (715)
T 2va8_A 219 KKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLS----KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLD 294 (715)
T ss_dssp STTEEEEEETTSCEEEEESSSHHHHHHHHHHT----TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHH
T ss_pred cccceeeecCcchhhhcccchHHHHHHHHHHh----cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHH
Confidence 00011111 12344455555543 56899999999999999999987642
Q ss_pred ------------------CeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEE----cC----
Q 047490 223 ------------------ISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIM----FD---- 275 (323)
Q Consensus 223 ------------------~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~----~~---- 275 (323)
..+..+||+|+..+|..+++.|++ |.++|||||+++++|+|+ .+++||+ |+
T Consensus 295 ~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~--g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~ 372 (715)
T 2va8_A 295 DIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQ--RKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIA 372 (715)
T ss_dssp TCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHT--TCSCEEEECGGGGGSSCCCBSEEEECCC--------
T ss_pred HhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHc--CCCeEEEEChHHhcccCCCceEEEEeCCeeccccCC
Confidence 248899999999999999999999 999999999999999999 8999998 88
Q ss_pred ---CCCCchhhhhhhcccccCC--CcceEEEEeeCCc
Q 047490 276 ---FPLNSIDYLHRTGRTARMG--AKGKVTSLVAKKD 307 (323)
Q Consensus 276 ---~p~s~~~~~Q~~GR~~R~~--~~g~~~~~~~~~~ 307 (323)
.|.|...|.||+||+||.| ..|.|+.+++..+
T Consensus 373 ~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 373 GYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp ------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred CCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 7999999999999999988 4799999998765
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-35 Score=275.32 Aligned_cols=271 Identities=18% Similarity=0.208 Sum_probs=205.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEe
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLV 96 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vI 96 (323)
+.+++|++|+++|+.|+++.++.+. ..++++..++|+....... .++++|+|+||+++..++.+....++++++||
T Consensus 68 ~~~~l~i~P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vI 143 (720)
T 2zj8_A 68 GGKAVYIVPLKALAEEKFQEFQDWE-KIGLRVAMATGDYDSKDEW---LGKYDIIIATAEKFDSLLRHGSSWIKDVKILV 143 (720)
T ss_dssp CSEEEEECSSGGGHHHHHHHTGGGG-GGTCCEEEECSCSSCCCGG---GGGCSEEEECHHHHHHHHHHTCTTGGGEEEEE
T ss_pred CCEEEEEcCcHHHHHHHHHHHHHHH-hcCCEEEEecCCCCccccc---cCCCCEEEECHHHHHHHHHcChhhhhcCCEEE
Confidence 6799999999999999999997554 3478999999976654432 23579999999999998888766688999999
Q ss_pred ecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccccccccc---ceee
Q 047490 97 LDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIAS---ARHD 173 (323)
Q Consensus 97 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 173 (323)
+||+|.+.+++++..+..++..++. +.+++++|||+++. ..+..++.... +.....+..... ....
T Consensus 144 iDE~H~l~~~~r~~~~~~ll~~l~~--------~~~ii~lSATl~n~--~~~~~~l~~~~-~~~~~rp~~l~~~~~~~~~ 212 (720)
T 2zj8_A 144 ADEIHLIGSRDRGATLEVILAHMLG--------KAQIIGLSATIGNP--EELAEWLNAEL-IVSDWRPVKLRRGVFYQGF 212 (720)
T ss_dssp EETGGGGGCTTTHHHHHHHHHHHBT--------TBEEEEEECCCSCH--HHHHHHTTEEE-EECCCCSSEEEEEEEETTE
T ss_pred EECCcccCCCcccHHHHHHHHHhhc--------CCeEEEEcCCcCCH--HHHHHHhCCcc-cCCCCCCCcceEEEEeCCe
Confidence 9999999988899999999888863 34999999999752 22333333211 111100000000 0000
Q ss_pred EEeccC----ChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC----------------------------
Q 047490 174 FIKLSG----SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN---------------------------- 221 (323)
Q Consensus 174 ~~~~~~----~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~---------------------------- 221 (323)
...... ...+...+.+.+. +++++||||++++.++.++..|.+.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 288 (720)
T 2zj8_A 213 VTWEDGSIDRFSSWEELVYDAIR----KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEK 288 (720)
T ss_dssp EEETTSCEEECSSTTHHHHHHHH----TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHH
T ss_pred eeccccchhhhhHHHHHHHHHHh----CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHH
Confidence 111110 1233444444443 5689999999999999999888653
Q ss_pred -----CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEE----cC----CCCCchhhhhhh
Q 047490 222 -----QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIM----FD----FPLNSIDYLHRT 287 (323)
Q Consensus 222 -----~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~----~~----~p~s~~~~~Q~~ 287 (323)
...+..+||+|+..+|..+++.|++ |.++|||||+++++|+|+ .+++||+ |+ .|.|..+|.||+
T Consensus 289 l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~--g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~ 366 (720)
T 2zj8_A 289 LAKAIRGGVAFHHAGLGRDERVLVEENFRK--GIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQML 366 (720)
T ss_dssp HHHHHTTTEEEECTTSCHHHHHHHHHHHHT--TSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHH
T ss_pred HHHHHhcCeeeecCCCCHHHHHHHHHHHHC--CCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHH
Confidence 1248999999999999999999999 999999999999999999 8888888 65 588999999999
Q ss_pred cccccCC--CcceEEEEeeCCcH
Q 047490 288 GRTARMG--AKGKVTSLVAKKDV 308 (323)
Q Consensus 288 GR~~R~~--~~g~~~~~~~~~~~ 308 (323)
||+||.| ..|.|+++++..+.
T Consensus 367 GRaGR~g~~~~G~~~~l~~~~~~ 389 (720)
T 2zj8_A 367 GRAGRPKYDEVGEGIIVSTSDDP 389 (720)
T ss_dssp TTBCCTTTCSEEEEEEECSSSCH
T ss_pred hhcCCCCCCCCceEEEEecCccH
Confidence 9999998 57899999998773
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-35 Score=273.79 Aligned_cols=274 Identities=17% Similarity=0.220 Sum_probs=206.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEe
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLV 96 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vI 96 (323)
+.+++|++|+++|+.|+++.++.+. ..++++...+|+...... ...+++|+|+||+++..++.+....++++++||
T Consensus 68 ~~~~l~i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vI 143 (702)
T 2p6r_A 68 GGKSLYVVPLRALAGEKYESFKKWE-KIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLV 143 (702)
T ss_dssp TCCEEEEESSHHHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEE
T ss_pred CCcEEEEeCcHHHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEE
Confidence 6799999999999999999996554 457899999988665443 123689999999999999888766688999999
Q ss_pred ecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccc-----cce
Q 047490 97 LDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIA-----SAR 171 (323)
Q Consensus 97 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 171 (323)
+||+|.+.+++++..+..++..+.... .+++++++|||+++. ..+..++.... +.......+.. ...
T Consensus 144 iDE~H~l~~~~r~~~~~~ll~~l~~~~-----~~~~ii~lSATl~n~--~~~~~~l~~~~-~~~~~r~~~l~~~~~~~~~ 215 (702)
T 2p6r_A 144 VDEIHLLDSEKRGATLEILVTKMRRMN-----KALRVIGLSATAPNV--TEIAEWLDADY-YVSDWRPVPLVEGVLCEGT 215 (702)
T ss_dssp ETTGGGGGCTTTHHHHHHHHHHHHHHC-----TTCEEEEEECCCTTH--HHHHHHTTCEE-EECCCCSSCEEEEEECSSE
T ss_pred EeeeeecCCCCcccHHHHHHHHHHhcC-----cCceEEEECCCcCCH--HHHHHHhCCCc-ccCCCCCccceEEEeeCCe
Confidence 999999998888888888887775432 245999999999852 23333443221 11111100000 000
Q ss_pred eeEEecc----CChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC--------------------------
Q 047490 172 HDFIKLS----GSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN-------------------------- 221 (323)
Q Consensus 172 ~~~~~~~----~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~-------------------------- 221 (323)
..+.... ....+...+.+.+ .+++++||||++++.++.+++.|.+.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 291 (702)
T 2p6r_A 216 LELFDGAFSTSRRVKFEELVEECV----AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKL 291 (702)
T ss_dssp EEEEETTEEEEEECCHHHHHHHHH----HTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHH
T ss_pred eeccCcchhhhhhhhHHHHHHHHH----hcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHH
Confidence 0111100 0001444555544 35789999999999999999888642
Q ss_pred ----CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEE----cC---CCCCchhhhhhhcc
Q 047490 222 ----QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIM----FD---FPLNSIDYLHRTGR 289 (323)
Q Consensus 222 ----~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~----~~---~p~s~~~~~Q~~GR 289 (323)
+..+..+||+|+..+|..+++.|++ |.++|||||+++++|+|+ .+++||+ || .|.|..+|.||+||
T Consensus 292 ~~~~~~~v~~~h~~l~~~~R~~v~~~f~~--g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GR 369 (702)
T 2p6r_A 292 AECVRKGAAFHHAGLLNGQRRVVEDAFRR--GNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGR 369 (702)
T ss_dssp HHHHHTTCCEECTTSCHHHHHHHHHHHHT--TSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTT
T ss_pred HHHHhcCeEEecCCCCHHHHHHHHHHHHC--CCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhh
Confidence 1357889999999999999999999 999999999999999999 8888888 55 68899999999999
Q ss_pred cccCC--CcceEEEEeeCCcH
Q 047490 290 TARMG--AKGKVTSLVAKKDV 308 (323)
Q Consensus 290 ~~R~~--~~g~~~~~~~~~~~ 308 (323)
+||.| ..|.|+.+++..+.
T Consensus 370 aGR~g~~~~G~~~~l~~~~~~ 390 (702)
T 2p6r_A 370 AGRPGMDERGEAIIIVGKRDR 390 (702)
T ss_dssp BSCTTTCSCEEEEEECCGGGH
T ss_pred cCCCCCCCCceEEEEecCccH
Confidence 99998 48999999998763
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-35 Score=285.22 Aligned_cols=284 Identities=17% Similarity=0.272 Sum_probs=212.8
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccC---CccccccCC-CCCEEEeChHHHHHHHHcCCCCCC
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRL---RPQEDSLNN-PIDMVVGTPGRILQHIEDGNMVYG 90 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~Iii~Tp~~l~~~~~~~~~~~~ 90 (323)
.+++++|||+||++|+.|+.+.++++. ..++++..++|+... ..+...+.. .++|+|+||+++.+.+.. +.++
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~-~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~ 195 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLA-DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQK 195 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTS-CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTS
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhh-CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hccc
Confidence 457899999999999999999999977 668899999999876 333334443 489999999999887764 5577
Q ss_pred CCcEEeecchhhhhc-----------CCChhh-HHHHHhhhc--cccCC-CCCCCceEEEEEeec-chhhHHHHHHHhcC
Q 047490 91 DIKYLVLDEADTMFD-----------RGFGPD-IRKFLVPLK--NRASK-PNGQGFQTVLVSATM-TKAVQKLVDEECQG 154 (323)
Q Consensus 91 ~~~~vIiDE~h~~~~-----------~~~~~~-~~~i~~~~~--~~~~~-~~~~~~~~i~~sat~-~~~~~~~~~~~~~~ 154 (323)
+++++|+||+|++.. .++... +..++..++ ..... ....+.|++++|||+ +......+......
T Consensus 196 ~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~ 275 (1104)
T 4ddu_A 196 RFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN 275 (1104)
T ss_dssp CCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC
T ss_pred CcCEEEEeCCCccccccccchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee
Confidence 899999999987654 667776 777777665 11111 111245999999994 54444332222222
Q ss_pred ceeeeccccccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeE-EecCCCC
Q 047490 155 IAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTV-NYHGEVP 233 (323)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~ 233 (323)
+...........+.+.+... ++...+.+++.. .++++||||+++..++.+++.|+..++.+. .+||.
T Consensus 276 ---i~v~~~~~~~~~i~~~~~~~----~k~~~L~~ll~~---~~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-- 343 (1104)
T 4ddu_A 276 ---FTVGRLVSVARNITHVRISS----RSKEKLVELLEI---FRDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-- 343 (1104)
T ss_dssp ---CCCCBCCCCCCCEEEEEESC----CCHHHHHHHHHH---HCSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH--
T ss_pred ---EEeccCCCCcCCceeEEEec----CHHHHHHHHHHh---cCCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc--
Confidence 11122223344455555444 244555666655 247999999999999999999999999998 89992
Q ss_pred HHHHHHHHHhccccCCCCCEEEE----ecccccccCC-C-CCEEEEcCCCC-----------------------------
Q 047490 234 AQERVENLNKFKNEDGDCPTLVC----TDLAARGLDL-D-VDHVIMFDFPL----------------------------- 278 (323)
Q Consensus 234 ~~~r~~~~~~f~~~~g~~~ilv~----t~~~~~Gid~-~-~~~vi~~~~p~----------------------------- 278 (323)
|++ ++.|++ |+.+|||| |+++++|+|+ + +++||+||+|.
T Consensus 344 ---rr~-l~~F~~--G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~ 417 (1104)
T 4ddu_A 344 ---EKN-FEDFKV--GKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQE 417 (1104)
T ss_dssp ---HHH-HHHHHH--TSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCC
T ss_pred ---HHH-HHHHHC--CCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHH
Confidence 555 999999 99999999 9999999999 8 99999999998
Q ss_pred -------------------------------------------CchhhhhhhcccccCCCcc--eEEEEeeCCcHHHHHH
Q 047490 279 -------------------------------------------NSIDYLHRTGRTARMGAKG--KVTSLVAKKDVLLADR 313 (323)
Q Consensus 279 -------------------------------------------s~~~~~Q~~GR~~R~~~~g--~~~~~~~~~~~~~~~~ 313 (323)
+..+|+||+||+||.|..| .+++++...|...++.
T Consensus 418 ~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~ 497 (1104)
T 4ddu_A 418 NPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFES 497 (1104)
T ss_dssp CCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHH
Confidence 6778999999999976433 4555555588888888
Q ss_pred HHHHHH
Q 047490 314 IEEAIR 319 (323)
Q Consensus 314 i~~~l~ 319 (323)
+++.++
T Consensus 498 l~~~~~ 503 (1104)
T 4ddu_A 498 LKTRLL 503 (1104)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888876
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-35 Score=285.13 Aligned_cols=282 Identities=19% Similarity=0.265 Sum_probs=212.0
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccce----eEEEeecCccCCcc---ccccCCCCCEEEeChHHHHHHHHcCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARF----RSTMVSGGGRLRPQ---EDSLNNPIDMVVGTPGRILQHIEDGNMV 88 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~~Iii~Tp~~l~~~~~~~~~~ 88 (323)
+++++|||+||++|+.|+.+.+++++...++ ++..++|+.....+ ...+.+ ++|+|+||++|.+.+.+
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~---- 172 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE---- 172 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----
Confidence 4789999999999999999999999988787 89999998876553 233344 89999999999987665
Q ss_pred CCCCcEEeecchhhhhcCCChhhHHHHHhhhcccc---CCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccccc
Q 047490 89 YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRA---SKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHK 165 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (323)
+++++++|+||+|++.+ ++..+..++..+.... ......+.|.+++|||+++. .......+..+..+.......
T Consensus 173 L~~l~~lViDEah~~l~--~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~ 249 (1054)
T 1gku_B 173 LGHFDFIFVDDVDAILK--ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRI 249 (1054)
T ss_dssp SCCCSEEEESCHHHHHT--STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEE
T ss_pred hccCCEEEEeChhhhhh--ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCccc
Confidence 66999999999999988 5677777776653210 00001234789999999876 322222222222222222222
Q ss_pred ccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhcc
Q 047490 166 KIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245 (323)
Q Consensus 166 ~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~ 245 (323)
....+.+.+. ...+...+.+++... ++++||||++++.++.+++.|+.. +.+..+||++. .+++.|+
T Consensus 250 ~~~~i~~~~~----~~~k~~~L~~ll~~~---~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~ 316 (1054)
T 1gku_B 250 TVRNVEDVAV----NDESISTLSSILEKL---GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFV 316 (1054)
T ss_dssp CCCCEEEEEE----SCCCTTTTHHHHTTS---CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHH
T ss_pred CcCCceEEEe----chhHHHHHHHHHhhc---CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHH
Confidence 3334444444 234556666666653 578999999999999999999988 89999999984 7889999
Q ss_pred ccCCCCCEEEE----ecccccccCC-CC-CEEEEcCCC------------------------------------------
Q 047490 246 NEDGDCPTLVC----TDLAARGLDL-DV-DHVIMFDFP------------------------------------------ 277 (323)
Q Consensus 246 ~~~g~~~ilv~----t~~~~~Gid~-~~-~~vi~~~~p------------------------------------------ 277 (323)
+ |+.+|||| |+++++|+|+ ++ ++||++|.|
T Consensus 317 ~--G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (1054)
T 1gku_B 317 E--GEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHID 394 (1054)
T ss_dssp H--TSCSEEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHH
T ss_pred c--CCCcEEEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 9 99999999 8999999999 85 999999999
Q ss_pred -----------------------------CCchhhhhhhcccccCCCcc--eEEEEeeCCcHHHHHHHHHHHHh
Q 047490 278 -----------------------------LNSIDYLHRTGRTARMGAKG--KVTSLVAKKDVLLADRIEEAIRK 320 (323)
Q Consensus 278 -----------------------------~s~~~~~Q~~GR~~R~~~~g--~~~~~~~~~~~~~~~~i~~~l~~ 320 (323)
.+...|.||+||+||.|..| .+++++...|...++.+++.++.
T Consensus 395 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 395 EVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp HHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 78999999999999987765 58888888899999999988875
|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-35 Score=277.14 Aligned_cols=285 Identities=19% Similarity=0.305 Sum_probs=182.4
Q ss_pred CccEEEEcCCHHHHHHH-HHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHH------HcCCCCC
Q 047490 17 RPRAVVLCPTRELSEQV-FRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHI------EDGNMVY 89 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~------~~~~~~~ 89 (323)
+.++|||+|+++|+.|+ .++++++++. ++++..++|+.........+..+++|+|+||++|.+.+ ....+.+
T Consensus 56 ~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~ 134 (699)
T 4gl2_A 56 PGKVIVLVNKVLLVEQLFRKEFQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQL 134 (699)
T ss_dssp CCCBCCEESCSHHHHHHHHHTHHHHHTT-TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCG
T ss_pred CCeEEEEECCHHHHHHHHHHHHHHHcCc-CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceec
Confidence 47899999999999999 9999999875 47899999998776665555567899999999999887 3445678
Q ss_pred CCCcEEeecchhhhhcCC-ChhhHHHHHhh-hcccc----CCCCCCCceEEEEEeecchh-------hHHHHHH---Hhc
Q 047490 90 GDIKYLVLDEADTMFDRG-FGPDIRKFLVP-LKNRA----SKPNGQGFQTVLVSATMTKA-------VQKLVDE---ECQ 153 (323)
Q Consensus 90 ~~~~~vIiDE~h~~~~~~-~~~~~~~i~~~-~~~~~----~~~~~~~~~~i~~sat~~~~-------~~~~~~~---~~~ 153 (323)
.++++||+||||++.... +...+...+.. +.... .......++++++|||+... ....+.. .+.
T Consensus 135 ~~~~lvViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~ 214 (699)
T 4gl2_A 135 SDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLD 214 (699)
T ss_dssp GGCSEEEEESGGGCBTTBSSCSHHHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHT
T ss_pred ccCcEEEEECccccCccchHHHHHHHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcC
Confidence 899999999999985433 22222222211 11000 00001234899999999863 1111111 111
Q ss_pred C-ceeeeccc---cccccccceeeEEeccC--------------------------------------------------
Q 047490 154 G-IAHLRTST---LHKKIASARHDFIKLSG-------------------------------------------------- 179 (323)
Q Consensus 154 ~-~~~~~~~~---~~~~~~~~~~~~~~~~~-------------------------------------------------- 179 (323)
. ........ ...........+.....
T Consensus 215 ~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 294 (699)
T 4gl2_A 215 AFTIKTVKENLDQLKNQIQEPCKKFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGN 294 (699)
T ss_dssp CSCCCCCCTTHHHHHHHSCCCEEEEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTC
T ss_pred CCEEEeecCchHHHhhhcCCCceEEEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhh
Confidence 1 00000000 00000000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 047490 180 -------------------------------------------------------------------------------- 179 (323)
Q Consensus 180 -------------------------------------------------------------------------------- 179 (323)
T Consensus 295 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 374 (699)
T 4gl2_A 295 RKERVCAEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAE 374 (699)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhh
Confidence
Q ss_pred ----ChhHHHHHHHHhccCCC--C-CCeEEEEecCcccHHHHHHHHhhC------CCeeEEecCC--------CCHHHHH
Q 047490 180 ----SENKLEALLQVLEPSLS--K-GNKVMVFCNTLNSSRAVDHFLNEN------QISTVNYHGE--------VPAQERV 238 (323)
Q Consensus 180 ----~~~k~~~l~~~l~~~~~--~-~~~~lvf~~~~~~~~~l~~~l~~~------~~~~~~~~~~--------~~~~~r~ 238 (323)
...|...|.+.+..... . +.++||||++++.++.+++.|+.. ++.+..+||+ |+..+|.
T Consensus 375 ~~~~~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~ 454 (699)
T 4gl2_A 375 NPEYENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQK 454 (699)
T ss_dssp CCC----CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHH
Confidence 01122222233322111 2 689999999999999999999987 8999999999 9999999
Q ss_pred HHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCC
Q 047490 239 ENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKK 306 (323)
Q Consensus 239 ~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 306 (323)
+++++|++ |+.+|||||+++++|+|+ ++++||+||+|+|...|.||+||+||.| +.++++....
T Consensus 455 ~~~~~F~~--g~~~VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~~ 519 (699)
T 4gl2_A 455 EVISKFRT--GKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE--STYVLVAHSG 519 (699)
T ss_dssp HHHHHHCC-----CCSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEESS
T ss_pred HHHHHHhc--CCCcEEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeCC
Confidence 99999999 999999999999999999 9999999999999999999999987664 4444444433
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=270.60 Aligned_cols=275 Identities=17% Similarity=0.223 Sum_probs=206.1
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEE
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYL 95 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~v 95 (323)
+++++||++|+++|+.|+++.+++++. ++++..++|+... ...++|+|+||+++.+.+......++++++|
T Consensus 81 ~g~~vlvl~PtraLa~Q~~~~l~~~~~--~~~v~~l~G~~~~-------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lv 151 (997)
T 4a4z_A 81 NMTKTIYTSPIKALSNQKFRDFKETFD--DVNIGLITGDVQI-------NPDANCLIMTTEILRSMLYRGADLIRDVEFV 151 (997)
T ss_dssp TTCEEEEEESCGGGHHHHHHHHHTTC----CCEEEECSSCEE-------CTTSSEEEEEHHHHHHHHHHTCSGGGGEEEE
T ss_pred cCCeEEEEeCCHHHHHHHHHHHHHHcC--CCeEEEEeCCCcc-------CCCCCEEEECHHHHHHHHHhCchhhcCCCEE
Confidence 467899999999999999999999865 5688888887543 2347999999999999988877778899999
Q ss_pred eecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhh--HHHHHHHhcCce-eeecccccccccccee
Q 047490 96 VLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAV--QKLVDEECQGIA-HLRTSTLHKKIASARH 172 (323)
Q Consensus 96 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 172 (323)
|+||+|++.+++++..+..++..++. +++++++|||+++.. ..++........ .+....... ...+
T Consensus 152 ViDEaH~l~d~~~g~~~e~ii~~l~~--------~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~---pl~~ 220 (997)
T 4a4z_A 152 IFDEVHYVNDQDRGVVWEEVIIMLPQ--------HVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPV---PLEI 220 (997)
T ss_dssp EECCTTCCCTTCTTCCHHHHHHHSCT--------TCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEECSSCSS---CEEE
T ss_pred EEECcccccccchHHHHHHHHHhccc--------CCCEEEEcCCCCChHHHHHHHhcccCCceEEEecCCCCc---cceE
Confidence 99999999999999989988887754 349999999997543 333332221111 111111000 0000
Q ss_pred e-------------------------------------------------------------------------------
Q 047490 173 D------------------------------------------------------------------------------- 173 (323)
Q Consensus 173 ~------------------------------------------------------------------------------- 173 (323)
+
T Consensus 221 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~ 300 (997)
T 4a4z_A 221 NIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGS 300 (997)
T ss_dssp EEEETTEEEEEECTTCCBCHHHHHHHHHHHC-------------------------------------------------
T ss_pred EEecCCcchhcccchhhhhHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0
Q ss_pred -------------EEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCC-----------------
Q 047490 174 -------------FIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQI----------------- 223 (323)
Q Consensus 174 -------------~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~----------------- 223 (323)
+........+...+.+.+... ...++||||++++.|+.++..|...++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~--~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~ 378 (997)
T 4a4z_A 301 RGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKR--ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSI 378 (997)
T ss_dssp ----------------CCCCTTHHHHHHHHHHHT--TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 000011223456666666653 457999999999999999999976544
Q ss_pred ----------------------eeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCCCCCEEEEcCCCC---
Q 047490 224 ----------------------STVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPL--- 278 (323)
Q Consensus 224 ----------------------~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~~~~~vi~~~~p~--- 278 (323)
++..+||+|++.+|..+++.|++ |.++|||||+++++|+|++...||+++.|+
T Consensus 379 ~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~--G~~kVLvAT~~~a~GIDiP~~~VVi~~~~k~dg 456 (997)
T 4a4z_A 379 TRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSK--GFIKVLFATETFAMGLNLPTRTVIFSSIRKHDG 456 (997)
T ss_dssp TTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHT--TCCSEEEECTHHHHSCCCCCSEEEESCSEEEET
T ss_pred HhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHC--CCCcEEEEchHhhCCCCCCCceEEEeccccccC
Confidence 57899999999999999999999 999999999999999999438888877766
Q ss_pred ------CchhhhhhhcccccCC--CcceEEEEee--CCcHHHHHHH
Q 047490 279 ------NSIDYLHRTGRTARMG--AKGKVTSLVA--KKDVLLADRI 314 (323)
Q Consensus 279 ------s~~~~~Q~~GR~~R~~--~~g~~~~~~~--~~~~~~~~~i 314 (323)
|...|.|++||+||.| ..|.|++++. ..+...++.+
T Consensus 457 ~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~~~ 502 (997)
T 4a4z_A 457 NGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEV 502 (997)
T ss_dssp TEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHHHH
T ss_pred ccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHHHHH
Confidence 9999999999999998 5677888773 3344444443
|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-33 Score=259.42 Aligned_cols=282 Identities=15% Similarity=0.154 Sum_probs=204.1
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHH-HHHHHcC------CCCC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI-LQHIEDG------NMVY 89 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l-~~~~~~~------~~~~ 89 (323)
++.++||+||++||.|.++++..+....++++..++||.....+ ....+++|+|+||++| ++++... ...+
T Consensus 124 g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r--~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~l 201 (844)
T 1tf5_A 124 GKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEK--REAYAADITYSTNNELGFDYLRDNMVLYKEQMVQ 201 (844)
T ss_dssp SSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHH--HHhcCCCEEEECchhhhHHHHHHhhhcchhhhcc
Confidence 67899999999999999999999999999999999999764332 2233589999999999 6666553 2557
Q ss_pred CCCcEEeecchhhhh-cCC---------------ChhhHHHHHhhhccc-cCCCCCCCc---------------------
Q 047490 90 GDIKYLVLDEADTMF-DRG---------------FGPDIRKFLVPLKNR-ASKPNGQGF--------------------- 131 (323)
Q Consensus 90 ~~~~~vIiDE~h~~~-~~~---------------~~~~~~~i~~~~~~~-~~~~~~~~~--------------------- 131 (323)
+.+.++|+||||.|+ +.+ +...+..++..++.. ....+....
T Consensus 202 r~~~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~L 281 (844)
T 1tf5_A 202 RPLHFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNL 281 (844)
T ss_dssp CCCCEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCT
T ss_pred cCCCEEEECchhhhhhhccccchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCcccc
Confidence 889999999999997 543 334555555555310 000000111
Q ss_pred --------------------------------------------------------------------------------
Q 047490 132 -------------------------------------------------------------------------------- 131 (323)
Q Consensus 132 -------------------------------------------------------------------------------- 131 (323)
T Consensus 282 fsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q 361 (844)
T 1tf5_A 282 FDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQ 361 (844)
T ss_dssp TSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHH
T ss_pred CCCccchhHHHHHHHHHHHHHhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHH
Confidence
Q ss_pred -------eEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceee-EEeccCChhHHHHHHHHhccCCCCCCeEEE
Q 047490 132 -------QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHD-FIKLSGSENKLEALLQVLEPSLSKGNKVMV 203 (323)
Q Consensus 132 -------~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~k~~~l~~~l~~~~~~~~~~lv 203 (323)
++.+||+|...+...+.+.+......+ + ...+.....+. ++. .....|...+.+.+......+.++||
T Consensus 362 ~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~I--P-tn~p~~r~d~~d~v~-~~~~~K~~al~~~i~~~~~~~~pvLV 437 (844)
T 1tf5_A 362 NYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTI--P-TNRPVVRDDRPDLIY-RTMEGKFKAVAEDVAQRYMTGQPVLV 437 (844)
T ss_dssp HHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEEC--C-CSSCCCCEECCCEEE-SSHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHhhhccCCcccchhHHHHHHHhCCceEEe--c-CCCCcccccCCcEEE-eCHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 234445554443333322222111111 1 11111111111 222 34567888888887654346789999
Q ss_pred EecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCCC---------CCEEEEc
Q 047490 204 FCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLD---------VDHVIMF 274 (323)
Q Consensus 204 f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~~---------~~~vi~~ 274 (323)
||++...++.+++.|+..|+++..+||+++..++..+.+.|+. | .|+|||+.+++|+|+. ..+||+|
T Consensus 438 ft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~--g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~ 513 (844)
T 1tf5_A 438 GTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQK--G--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGT 513 (844)
T ss_dssp EESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTST--T--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEES
T ss_pred EECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCC--C--eEEEeCCccccCcCccccchhhhcCCcEEEEe
Confidence 9999999999999999999999999999988888766667765 6 4999999999999994 4599999
Q ss_pred CCCCCchhhhhhhcccccCCCcceEEEEeeCCcH
Q 047490 275 DFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308 (323)
Q Consensus 275 ~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~ 308 (323)
+.|.|.+.|.||+||+||.|.+|.+++|++..|.
T Consensus 514 d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 514 ERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp SCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSS
T ss_pred cCCCCHHHHHhhcCccccCCCCCeEEEEecHHHH
Confidence 9999999999999999999999999999998764
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-34 Score=268.68 Aligned_cols=274 Identities=16% Similarity=0.250 Sum_probs=197.3
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccc---c-CCCCCEEEeChHHHHHHHHcCCCCCCCC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS---L-NNPIDMVVGTPGRILQHIEDGNMVYGDI 92 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~Iii~Tp~~l~~~~~~~~~~~~~~ 92 (323)
+.+++|++||++|+.|+++.+++++...++++..++|+......... + .+.++|+|+||+.+.+ ...+.++
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l 491 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNL 491 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCC
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCC
Confidence 67999999999999999999999998888999999998765543222 2 3458999999987754 3557899
Q ss_pred cEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccccccccccee
Q 047490 93 KYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARH 172 (323)
Q Consensus 93 ~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (323)
++||+||+|++... ... .+... ..+.+++++|||+.+...............+ .........+..
T Consensus 492 ~lVVIDEaHr~g~~-----qr~---~l~~~-----~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i--~~~p~~r~~i~~ 556 (780)
T 1gm5_A 492 GLVIIDEQHRFGVK-----QRE---ALMNK-----GKMVDTLVMSATPIPRSMALAFYGDLDVTVI--DEMPPGRKEVQT 556 (780)
T ss_dssp CEEEEESCCCC----------C---CCCSS-----SSCCCEEEEESSCCCHHHHHHHTCCSSCEEE--CCCCSSCCCCEE
T ss_pred ceEEecccchhhHH-----HHH---HHHHh-----CCCCCEEEEeCCCCHHHHHHHHhCCcceeee--eccCCCCcceEE
Confidence 99999999985321 111 11111 1245899999999776544332111111111 111111111111
Q ss_pred eEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCc--------ccHHHHHHHHhh---CCCeeEEecCCCCHHHHHHHH
Q 047490 173 DFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTL--------NSSRAVDHFLNE---NQISTVNYHGEVPAQERVENL 241 (323)
Q Consensus 173 ~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~--------~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~ 241 (323)
.+ . ...+...+.+.+......+++++|||+.. ..++.+++.|++ .+..+..+||+|+..+|+.++
T Consensus 557 ~~---~-~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~ 632 (780)
T 1gm5_A 557 ML---V-PMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVM 632 (780)
T ss_dssp CC---C-CSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHH
T ss_pred EE---e-ccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHH
Confidence 11 1 12234455555655556788999999976 457888888887 467899999999999999999
Q ss_pred HhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCC-CchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHH
Q 047490 242 NKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPL-NSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEE 316 (323)
Q Consensus 242 ~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~-s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~ 316 (323)
++|++ |+.+|||||+++++|+|+ ++++||+++.|. +...+.||+||+||.|+.|.|++++++.+....++++.
T Consensus 633 ~~F~~--G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~~~~rl~~ 707 (780)
T 1gm5_A 633 LEFAE--GRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMERLRF 707 (780)
T ss_dssp HHHTT--TSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHHHHHHH
T ss_pred HHHHC--CCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChHHHHHHHH
Confidence 99999 999999999999999999 999999999996 78889999999999999999999998545544444433
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=267.33 Aligned_cols=264 Identities=18% Similarity=0.276 Sum_probs=200.2
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccc---c-CCCCCEEEeChHHHHHHHHcCCCCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS---L-NNPIDMVVGTPGRILQHIEDGNMVYGD 91 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~Iii~Tp~~l~~~~~~~~~~~~~ 91 (323)
.+++++|++||++|+.|+.+.+++++...++++..+++.......... + .+.++|+|+||+.+. ....+++
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~ 725 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKD 725 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSS
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccc
Confidence 467999999999999999999999988778888888876554433222 2 345899999997653 2456789
Q ss_pred CcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccce
Q 047490 92 IKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASAR 171 (323)
Q Consensus 92 ~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (323)
+++||+||+|++ +......+..+.. +.+++++|||+.+.........+.....+.... .....+.
T Consensus 726 l~lvIiDEaH~~-----g~~~~~~l~~l~~--------~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~--~~r~~i~ 790 (1151)
T 2eyq_A 726 LGLLIVDEEHRF-----GVRHKERIKAMRA--------NVDILTLTATPIPRTLNMAMSGMRDLSIIATPP--ARRLAVK 790 (1151)
T ss_dssp EEEEEEESGGGS-----CHHHHHHHHHHHT--------TSEEEEEESSCCCHHHHHHHTTTSEEEECCCCC--CBCBCEE
T ss_pred cceEEEechHhc-----ChHHHHHHHHhcC--------CCCEEEEcCCCChhhHHHHHhcCCCceEEecCC--CCccccE
Confidence 999999999984 4445555555543 238999999998776655544443333222111 1111222
Q ss_pred eeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC--CCeeEEecCCCCHHHHHHHHHhccccCC
Q 047490 172 HDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN--QISTVNYHGEVPAQERVENLNKFKNEDG 249 (323)
Q Consensus 172 ~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~g 249 (323)
. +............+...+ ..+++++|||++.++++.+++.|++. +..+..+||+|+..+|++++++|++ |
T Consensus 791 ~-~~~~~~~~~i~~~il~~l----~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~--g 863 (1151)
T 2eyq_A 791 T-FVREYDSMVVREAILREI----LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH--Q 863 (1151)
T ss_dssp E-EEEECCHHHHHHHHHHHH----TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHT--T
T ss_pred E-EEecCCHHHHHHHHHHHH----hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHc--C
Confidence 2 222222222233333333 35789999999999999999999887 7889999999999999999999999 9
Q ss_pred CCCEEEEecccccccCC-CCCEEEEcCC-CCCchhhhhhhcccccCCCcceEEEEeeCC
Q 047490 250 DCPTLVCTDLAARGLDL-DVDHVIMFDF-PLNSIDYLHRTGRTARMGAKGKVTSLVAKK 306 (323)
Q Consensus 250 ~~~ilv~t~~~~~Gid~-~~~~vi~~~~-p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 306 (323)
+.+|||||+++++|+|+ ++++||+++. +.+..+|.||+||+||.|+.|.|++++...
T Consensus 864 ~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 864 RFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp SCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred CCcEEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 99999999999999999 8999999988 568999999999999999999999998764
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-33 Score=278.51 Aligned_cols=285 Identities=15% Similarity=0.212 Sum_probs=202.3
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCC--CCCCCC
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGN--MVYGDI 92 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~--~~~~~~ 92 (323)
.++.++||++|+++|++|+.+.+++.+...++++..++|+....... ..+++|+|||||++..++.++. ..++++
T Consensus 132 ~~~~k~lyiaP~kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~~---~~~~~IlVtTpEkld~llr~~~~~~~l~~v 208 (1724)
T 4f92_B 132 VDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEE---ISATQIIVCTPEKWDIITRKGGERTYTQLV 208 (1724)
T ss_dssp TTSCEEEEECSSHHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCCTT---GGGCSEEEECHHHHHHHTTSSTTHHHHTTE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCccc---cCCCCEEEECHHHHHHHHcCCccchhhcCc
Confidence 45779999999999999999999999988899999999987654432 2357999999999977766543 237889
Q ss_pred cEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCc----eeeeccccccccc
Q 047490 93 KYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGI----AHLRTSTLHKKIA 168 (323)
Q Consensus 93 ~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 168 (323)
++||+||+|.+.+ +++..++.++.++...... .+.++|+|++|||+++.. .+..++... ..+. .... .+.
T Consensus 209 ~~vIiDEvH~l~d-~RG~~lE~~l~rl~~~~~~-~~~~~riI~LSATl~N~~--dvA~wL~~~~~~~~~~~-~~~~-RPv 282 (1724)
T 4f92_B 209 RLIILDEIHLLHD-DRGPVLEALVARAIRNIEM-TQEDVRLIGLSATLPNYE--DVATFLRVDPAKGLFYF-DNSF-RPV 282 (1724)
T ss_dssp EEEEETTGGGGGS-TTHHHHHHHHHHHHHHHHH-HTCCCEEEEEECSCTTHH--HHHHHTTCCHHHHEEEC-CGGG-CSS
T ss_pred CEEEEecchhcCC-ccHHHHHHHHHHHHHHHHh-CCCCCcEEEEecccCCHH--HHHHHhCCCCCCCeEEE-CCCC-ccC
Confidence 9999999998865 5788877776654321100 113569999999997532 122233221 1111 1111 111
Q ss_pred cceeeEEeccCCh--hHHH----HHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhh----------------------
Q 047490 169 SARHDFIKLSGSE--NKLE----ALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE---------------------- 220 (323)
Q Consensus 169 ~~~~~~~~~~~~~--~k~~----~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~---------------------- 220 (323)
...+++....... .... .+.+.+.+. ..++++||||++++.|+.+++.|.+
T Consensus 283 pL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~ 361 (1724)
T 4f92_B 283 PLEQTYVGITEKKAIKRFQIMNEIVYEKIMEH-AGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVL 361 (1724)
T ss_dssp CEEEECCEECCCCHHHHHHHHHHHHHHHHTTC-CSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHH
T ss_pred ccEEEEeccCCcchhhhhHHHHHHHHHHHHHH-hcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHH
Confidence 2233333333221 1112 223333333 2457999999999999998887753
Q ss_pred ---------------CCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCCCCCEEEE-----cC-----
Q 047490 221 ---------------NQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIM-----FD----- 275 (323)
Q Consensus 221 ---------------~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~~~~~vi~-----~~----- 275 (323)
...+++.|||+|+..+|..+++.|++ |.++|||||++++.|+|+++..||+ |+
T Consensus 362 ~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~--G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~ 439 (1724)
T 4f92_B 362 RTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFAD--KHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR 439 (1724)
T ss_dssp HHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHT--TCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTE
T ss_pred HhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHC--CCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCC
Confidence 12458899999999999999999999 9999999999999999996666665 33
Q ss_pred -CCCCchhhhhhhcccccCC--CcceEEEEeeCCcHHHH
Q 047490 276 -FPLNSIDYLHRTGRTARMG--AKGKVTSLVAKKDVLLA 311 (323)
Q Consensus 276 -~p~s~~~~~Q~~GR~~R~~--~~g~~~~~~~~~~~~~~ 311 (323)
.|.+..+|.||+|||||.| ..|.++++....+....
T Consensus 440 ~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~ 478 (1724)
T 4f92_B 440 WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYY 478 (1724)
T ss_dssp EEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHH
T ss_pred cccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHH
Confidence 2458999999999999988 47899999888765443
|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-33 Score=255.27 Aligned_cols=284 Identities=15% Similarity=0.140 Sum_probs=193.7
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHH-HHHHHcCC------CC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI-LQHIEDGN------MV 88 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l-~~~~~~~~------~~ 88 (323)
.+++++||+||++||.|.++.+..++...++++..++||.... .+....+++|+|+||++| ++++.... ..
T Consensus 114 ~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~--~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~ 191 (853)
T 2fsf_A 114 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAP--AKREAYAADITYGTNNEYGFDYLRDNMAFSPEERV 191 (853)
T ss_dssp TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCC
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHH--HHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhc
Confidence 3678999999999999999999999999999999999997643 223333589999999999 78777653 56
Q ss_pred CCCCcEEeecchhhhh-cCC---------------ChhhHHHHHhhhcccc------------CCCCCCCceEE------
Q 047490 89 YGDIKYLVLDEADTMF-DRG---------------FGPDIRKFLVPLKNRA------------SKPNGQGFQTV------ 134 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~-~~~---------------~~~~~~~i~~~~~~~~------------~~~~~~~~~~i------ 134 (323)
++++.++|+||+|.++ +.+ +...+..++..++... ...+....++.
T Consensus 192 ~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~ 271 (853)
T 2fsf_A 192 QRKLHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGL 271 (853)
T ss_dssp CCSCCEEEESCHHHHTTTTTTCEEEEEEC---------------------------------------------------
T ss_pred ccCCcEEEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHH
Confidence 7899999999999998 432 3345555555554200 00000011211
Q ss_pred ------------------EEEeecch------------------------------------------------------
Q 047490 135 ------------------LVSATMTK------------------------------------------------------ 142 (323)
Q Consensus 135 ------------------~~sat~~~------------------------------------------------------ 142 (323)
++|||.+.
T Consensus 272 ~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaiea 351 (853)
T 2fsf_A 272 VLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEA 351 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhCCcccccccccCcccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHh
Confidence 56666432
Q ss_pred -------------------------------------hhHHHHHHHhcCceeeeccccccccccceeeEEeccCChhHHH
Q 047490 143 -------------------------------------AVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLE 185 (323)
Q Consensus 143 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 185 (323)
+...+.+-+... ....+ ...+.....+..........|..
T Consensus 352 ke~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l~--vv~IP-tn~p~~R~d~~d~v~~~~~~K~~ 428 (853)
T 2fsf_A 352 KEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLD--TVVVP-TNRPMIRKDLPDLVYMTEAEKIQ 428 (853)
T ss_dssp -----CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCCHHHHHHHHCCE--EEECC-CSSCCCCEECCCEEESSHHHHHH
T ss_pred cccceecccccccceeehHHHHhhhhhhhcCCCCchhHHHHHHHHhCCc--EEEcC-CCCCceeecCCcEEEeCHHHHHH
Confidence 111111111000 00111 11111111111112234567999
Q ss_pred HHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccC
Q 047490 186 ALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLD 265 (323)
Q Consensus 186 ~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid 265 (323)
.+.+.+......+.++||||++...++.+++.|+..|+++..+||++...++..+.+.|+. | .|+|||+.+++|+|
T Consensus 429 al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~--G--~VtIATnmAgRGtD 504 (853)
T 2fsf_A 429 AIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYP--A--AVTIATNMAGRGTD 504 (853)
T ss_dssp HHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTST--T--CEEEEESCCSSCSC
T ss_pred HHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCC--C--eEEEecccccCCcC
Confidence 9998886544567899999999999999999999999999999999988888888899998 7 49999999999999
Q ss_pred C-CC-------------------------------------CEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCc
Q 047490 266 L-DV-------------------------------------DHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307 (323)
Q Consensus 266 ~-~~-------------------------------------~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 307 (323)
+ .. .+||+++.|.|.+.|.||+||+||.|.+|.++.|++..|
T Consensus 505 I~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD 584 (853)
T 2fsf_A 505 IVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMED 584 (853)
T ss_dssp CCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred ccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccH
Confidence 9 53 599999999999999999999999999999999999876
Q ss_pred H
Q 047490 308 V 308 (323)
Q Consensus 308 ~ 308 (323)
.
T Consensus 585 ~ 585 (853)
T 2fsf_A 585 A 585 (853)
T ss_dssp G
T ss_pred H
Confidence 4
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=255.99 Aligned_cols=267 Identities=15% Similarity=0.207 Sum_probs=189.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEe
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLV 96 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vI 96 (323)
++++|||+|+++|+.|+.+.++++....+..+..++++.....+ ...+++|+|+||+.+.. .....++++++||
T Consensus 157 ~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~---~~~~~~~~~~liI 230 (510)
T 2oca_A 157 EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVK---QPKEWFSQFGMMM 230 (510)
T ss_dssp SSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTT---SCGGGGGGEEEEE
T ss_pred CCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc---cccCCcEEEEeHHHHhh---chhhhhhcCCEEE
Confidence 45999999999999999999999966556788888888665443 44567999999997653 2334577899999
Q ss_pred ecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHH-HHhcCceeeecccccc----cccc--
Q 047490 97 LDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVD-EECQGIAHLRTSTLHK----KIAS-- 169 (323)
Q Consensus 97 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~-- 169 (323)
+||+|++.. ..+..++..+.. ..+++++||||++....... ..+..+.......... ....
T Consensus 231 iDE~H~~~~----~~~~~il~~~~~--------~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 298 (510)
T 2oca_A 231 NDECHLATG----KSISSIISGLNN--------CMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELK 298 (510)
T ss_dssp EETGGGCCH----HHHHHHGGGCTT--------CCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCE
T ss_pred EECCcCCCc----ccHHHHHHhccc--------CcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCce
Confidence 999998754 456666655532 23899999999766433221 1111221111111000 0000
Q ss_pred ceeeEE--------------------eccCChhHHHHHHHHhccCCCC-CCeEEEEecCcccHHHHHHHHhhCCCeeEEe
Q 047490 170 ARHDFI--------------------KLSGSENKLEALLQVLEPSLSK-GNKVMVFCNTLNSSRAVDHFLNENQISTVNY 228 (323)
Q Consensus 170 ~~~~~~--------------------~~~~~~~k~~~l~~~l~~~~~~-~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~ 228 (323)
...... .......+...+.+.+...... +.+++|||+ .++++.+++.|++.+..+..+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~ 377 (510)
T 2oca_A 299 INSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYV 377 (510)
T ss_dssp EEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEE
T ss_pred EEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEE
Confidence 000000 1111223444455555543333 445566666 889999999999988899999
Q ss_pred cCCCCHHHHHHHHHhccccCCCCCEEEEe-cccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEee
Q 047490 229 HGEVPAQERVENLNKFKNEDGDCPTLVCT-DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304 (323)
Q Consensus 229 ~~~~~~~~r~~~~~~f~~~~g~~~ilv~t-~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~ 304 (323)
||+++..+|+++++.|++ |+.+||||| +++++|+|+ ++++||++++|+|...|.|++||+||.|+.+.++.+++
T Consensus 378 ~g~~~~~~r~~i~~~f~~--g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 378 SGEVDTETRNIMKTLAEN--GKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp SSSTTHHHHHHHHHHHHH--CCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred ECCCCHHHHHHHHHHHhC--CCCCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 999999999999999999 999999999 999999999 99999999999999999999999999998764344433
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=274.05 Aligned_cols=297 Identities=16% Similarity=0.188 Sum_probs=206.7
Q ss_pred hhhccccCCCCccEEEEcCCHHHHHHHHHHHHHhc-cccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcC
Q 047490 7 AMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSIS-HHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDG 85 (323)
Q Consensus 7 ~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~ 85 (323)
+|+..+.+.++.+++|++|+++|+.|..+.+++.+ ...++++..++|+...+.. ...+++|+|+|||++..++.++
T Consensus 962 ail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~ 1038 (1724)
T 4f92_B 962 AILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRW 1038 (1724)
T ss_dssp HHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTT
T ss_pred HHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCc
Confidence 45555556667899999999999999999998754 4568899999988654322 2234799999999998877764
Q ss_pred C--CCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchh--hHHHHHHHhcCceeeecc
Q 047490 86 N--MVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKA--VQKLVDEECQGIAHLRTS 161 (323)
Q Consensus 86 ~--~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~--~~~~~~~~~~~~~~~~~~ 161 (323)
. ..++++++||+||+|.+.+ ..+..+..++..+...... ...++|+|++|||+++. ..+++.........+.
T Consensus 1039 ~~~~~l~~v~lvViDE~H~l~d-~rg~~le~il~rl~~i~~~-~~~~~riI~lSATl~N~~dla~WL~~~~~~~~~~~-- 1114 (1724)
T 4f92_B 1039 KQRKNVQNINLFVVDEVHLIGG-ENGPVLEVICSRMRYISSQ-IERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFH-- 1114 (1724)
T ss_dssp TTCHHHHSCSEEEECCGGGGGS-TTHHHHHHHHHHHHHHHHT-TSSCCEEEEEESCBTTHHHHHHHHTCCSTTEEECC--
T ss_pred ccccccceeeEEEeechhhcCC-CCCccHHHHHHHHHHHHhh-cCCCceEEEEeCCCCCHHHHHHHhCCCCCCeEEeC--
Confidence 3 3367899999999998876 4778777777666432211 12356999999999753 2333211111111111
Q ss_pred ccccccccceeeEEeccCCh--hHHH----HHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhh---------------
Q 047490 162 TLHKKIASARHDFIKLSGSE--NKLE----ALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE--------------- 220 (323)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~--~k~~----~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~--------------- 220 (323)
..........++....... .+.. .+...+... ..++++||||++++.++.++..|..
T Consensus 1115 -~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~ 1192 (1724)
T 4f92_B 1115 -PNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKH-SPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCT 1192 (1724)
T ss_dssp -GGGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHH-CSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSC
T ss_pred -CCCCCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHh-cCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhccc
Confidence 1111112222222222211 1111 122223222 3567999999999999988766532
Q ss_pred -------------------CCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCCCCCEEEEcC------
Q 047490 221 -------------------NQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFD------ 275 (323)
Q Consensus 221 -------------------~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~~~~~vi~~~------ 275 (323)
...+++.+||+|++.+|..+++.|++ |.++|||||++++.|+|+++..||+.+
T Consensus 1193 ~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~--G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg 1270 (1724)
T 4f92_B 1193 EKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSS--GAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNG 1270 (1724)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHH--TSBCEEEEEGGGSSSCCCCBSEEEEECSEEEET
T ss_pred HHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHC--CCCeEEEEChHHHcCCCCCccEEEEecCccccC
Confidence 02368899999999999999999999 999999999999999999766666633
Q ss_pred -----CCCCchhhhhhhcccccCCC--cceEEEEeeCCcHHHHHHH
Q 047490 276 -----FPLNSIDYLHRTGRTARMGA--KGKVTSLVAKKDVLLADRI 314 (323)
Q Consensus 276 -----~p~s~~~~~Q~~GR~~R~~~--~g~~~~~~~~~~~~~~~~i 314 (323)
.|.+..+|.||+||+||.|. .|.+++++...+....+++
T Consensus 1271 ~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~l 1316 (1724)
T 4f92_B 1271 KIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKF 1316 (1724)
T ss_dssp TTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHH
T ss_pred cccccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHH
Confidence 25688999999999999995 7999999988777655443
|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-32 Score=248.17 Aligned_cols=283 Identities=15% Similarity=0.166 Sum_probs=206.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHH-HHHHHcC------CCCC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI-LQHIEDG------NMVY 89 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l-~~~~~~~------~~~~ 89 (323)
+..++||+||++||.|.++++..+....++++..++|+.....+ ....+++|+|+||+.| ++++..+ ...+
T Consensus 152 g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r--~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~l 229 (922)
T 1nkt_A 152 GNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDER--RVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQ 229 (922)
T ss_dssp TSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCC
T ss_pred CCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHH--HHhcCCCEEEECchHhhHHHHHhhhhccHhhhcc
Confidence 56899999999999999999999999999999999999764332 2233579999999999 7777664 3567
Q ss_pred CCCcEEeecchhhhh-cC---------------CChhhHHHHHhhhccc-cCCCCCCCceEE-----------------E
Q 047490 90 GDIKYLVLDEADTMF-DR---------------GFGPDIRKFLVPLKNR-ASKPNGQGFQTV-----------------L 135 (323)
Q Consensus 90 ~~~~~vIiDE~h~~~-~~---------------~~~~~~~~i~~~~~~~-~~~~~~~~~~~i-----------------~ 135 (323)
+.+.++|+||+|.|+ +. ++...+..++..++.. ....+....++. +
T Consensus 230 r~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~L 309 (922)
T 1nkt_A 230 RGHHYAIVDEVDSILIDEARTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNL 309 (922)
T ss_dssp CCCCEEEETTHHHHHTTGGGSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSST
T ss_pred CCCCEEEEeChHHHHHhcCccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccc
Confidence 889999999999998 32 2445677777766410 000000122455 5
Q ss_pred EEeecchhhH----------------------------------------------------------------------
Q 047490 136 VSATMTKAVQ---------------------------------------------------------------------- 145 (323)
Q Consensus 136 ~sat~~~~~~---------------------------------------------------------------------- 145 (323)
+|||.+.-..
T Consensus 310 fsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Q 389 (922)
T 1nkt_A 310 YEAANSPLVSYLNNALKAKELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQ 389 (922)
T ss_dssp TCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHH
T ss_pred cCCcchhHHHHHHHHHHHHHHhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehH
Confidence 5666543111
Q ss_pred ---------------------HHHHHHhcCceeeecccccccccccee-eEEeccCChhHHHHHHHHhccCCCCCCeEEE
Q 047490 146 ---------------------KLVDEECQGIAHLRTSTLHKKIASARH-DFIKLSGSENKLEALLQVLEPSLSKGNKVMV 203 (323)
Q Consensus 146 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lv 203 (323)
.+.+-+...... .+ ...+.....+ .++. .....|...+.+.+......+.|+||
T Consensus 390 nyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~--IP-tn~p~~R~d~~d~v~-~t~~~K~~al~~~i~~~~~~gqpvLV 465 (922)
T 1nkt_A 390 NYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVS--IP-TNMPMIREDQSDLIY-KTEEAKYIAVVDDVAERYAKGQPVLI 465 (922)
T ss_dssp HHHTTSSEEEEEESCCGGGHHHHHHHHCCEEEE--CC-CSSCCCCEECCCEEE-SCHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHhhhhhhccccCchhHHHHHHHHhCCCeEE--eC-CCCCcccccCCcEEE-eCHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 111111000000 00 0000000111 1222 23567888888888664456789999
Q ss_pred EecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CC--------------
Q 047490 204 FCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DV-------------- 268 (323)
Q Consensus 204 f~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~-------------- 268 (323)
||++...++.+++.|+..|+++..+||++...++..+.+.|+. | .|+|||+.+++|+|+ ..
T Consensus 466 ft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~--G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~ 541 (922)
T 1nkt_A 466 GTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRR--G--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRER 541 (922)
T ss_dssp EESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTST--T--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHT
T ss_pred EECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCC--C--eEEEecchhhcCccccCCCCHHHHHHHHHhhc
Confidence 9999999999999999999999999999887787778888887 7 499999999999999 54
Q ss_pred --------------------------------------CEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHH
Q 047490 269 --------------------------------------DHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL 309 (323)
Q Consensus 269 --------------------------------------~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 309 (323)
.+||+++.|.|.+.|.|++||+||.|.+|.++.|++..|.-
T Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~l 620 (922)
T 1nkt_A 542 GLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDEL 620 (922)
T ss_dssp TCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSHH
T ss_pred cccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHHH
Confidence 49999999999999999999999999999999999987763
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-31 Score=241.76 Aligned_cols=251 Identities=16% Similarity=0.201 Sum_probs=179.7
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhcccccee-EEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEE
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFR-STMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYL 95 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~v 95 (323)
+.++|||+|+++|+.||.++++++ +++ +..++|+... ..+|+|+||+.+...+.. ..+++++|
T Consensus 133 ~~~~Lvl~P~~~L~~Q~~~~~~~~----~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~---~~~~~~li 196 (472)
T 2fwr_A 133 STPTLIVVPTLALAEQWKERLGIF----GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK---LGNRFMLL 196 (472)
T ss_dssp CSCEEEEESSHHHHHHHHHHGGGG----CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHH---HTTTCSEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHH---hcCCCCEE
Confidence 578999999999999999999994 556 7777776432 368999999998776542 12469999
Q ss_pred eecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhh--HHHHHHHhc-----------------Cce
Q 047490 96 VLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAV--QKLVDEECQ-----------------GIA 156 (323)
Q Consensus 96 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~--~~~~~~~~~-----------------~~~ 156 (323)
|+||+|++.+..+.. ++..+.. .+++++||||.+.. ...+..... .+.
T Consensus 197 IvDEaH~~~~~~~~~----~~~~~~~---------~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~ 263 (472)
T 2fwr_A 197 IFDEVHHLPAESYVQ----IAQMSIA---------PFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYT 263 (472)
T ss_dssp EEETGGGTTSTTTHH----HHHTCCC---------SEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEE
T ss_pred EEECCcCCCChHHHH----HHHhcCC---------CeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeE
Confidence 999999998765543 4443332 28999999997321 001111111 110
Q ss_pred eeec--ccccc------------------------ccccceeeEE--------------------eccCChhHHHHHHHH
Q 047490 157 HLRT--STLHK------------------------KIASARHDFI--------------------KLSGSENKLEALLQV 190 (323)
Q Consensus 157 ~~~~--~~~~~------------------------~~~~~~~~~~--------------------~~~~~~~k~~~l~~~ 190 (323)
.... ..... ........+. .......|...+.++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 343 (472)
T 2fwr_A 264 IKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREI 343 (472)
T ss_dssp ECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHH
T ss_pred EEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHH
Confidence 0000 00000 0000000000 001234577778888
Q ss_pred hccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCC
Q 047490 191 LEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVD 269 (323)
Q Consensus 191 l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~ 269 (323)
+.. ..++++||||++...++.+++.|. +..+||+++..+|++++++|++ |+.+|||||+++++|+|+ +++
T Consensus 344 l~~--~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~--g~~~vLv~T~~~~~Gldlp~~~ 414 (472)
T 2fwr_A 344 LER--HRKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRT--GRFRAIVSSQVLDEGIDVPDAN 414 (472)
T ss_dssp HHH--TSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHH--SSCSBCBCSSCCCSSSCSCCBS
T ss_pred HHh--CCCCcEEEEECCHHHHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhC--CCCCEEEEcCchhcCcccccCc
Confidence 876 367899999999999999999884 5679999999999999999999 999999999999999999 999
Q ss_pred EEEEcCCCCCchhhhhhhcccccCCCc-c--eEEEEeeC
Q 047490 270 HVIMFDFPLNSIDYLHRTGRTARMGAK-G--KVTSLVAK 305 (323)
Q Consensus 270 ~vi~~~~p~s~~~~~Q~~GR~~R~~~~-g--~~~~~~~~ 305 (323)
+||++++|+|...|.|++||+||.|+. + .++.+++.
T Consensus 415 ~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~ 453 (472)
T 2fwr_A 415 VGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISR 453 (472)
T ss_dssp EEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEEC
T ss_pred EEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeC
Confidence 999999999999999999999999854 3 34445554
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-31 Score=243.02 Aligned_cols=241 Identities=19% Similarity=0.207 Sum_probs=172.5
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEe
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLV 96 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vI 96 (323)
+.++||++||++|+.|+++.+.+.. +..+....|+.. ...+++|+|+||++| +.+..+.+++++++|
T Consensus 257 g~~vLVl~PTReLA~Qia~~l~~~~---g~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lV 323 (666)
T 3o8b_A 257 GYKVLVLNPSVAATLGFGAYMSKAH---GIDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIII 323 (666)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHHH---SCCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEE
T ss_pred CCeEEEEcchHHHHHHHHHHHHHHh---CCCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEE
Confidence 5699999999999999999887765 334555555532 345679999999997 355667788999999
Q ss_pred ecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEe
Q 047490 97 LDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIK 176 (323)
Q Consensus 97 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (323)
+||+|.+ +.++...+..++..+.... ...++++|||+++.... ..+..... ..........
T Consensus 324 lDEAH~l-~~~~~~~l~~Il~~l~~~~------~~llil~SAT~~~~i~~------~~p~i~~v---~~~~~~~i~~--- 384 (666)
T 3o8b_A 324 CDECHST-DSTTILGIGTVLDQAETAG------ARLVVLATATPPGSVTV------PHPNIEEV---ALSNTGEIPF--- 384 (666)
T ss_dssp ETTTTCC-SHHHHHHHHHHHHHTTTTT------CSEEEEEESSCTTCCCC------CCTTEEEE---ECBSCSSEEE---
T ss_pred Eccchhc-CccHHHHHHHHHHhhhhcC------CceEEEECCCCCccccc------CCcceEEE---eecccchhHH---
Confidence 9999865 3345555666666654332 11377889999874210 00000000 0000000000
Q ss_pred ccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEE
Q 047490 177 LSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVC 256 (323)
Q Consensus 177 ~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~ 256 (323)
.. .... +. ...++++||||++++.++.+++.|++.++.+..+||+|++.+ |.+ +..+||||
T Consensus 385 ~~-~~~~-------l~--~~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~--~~~~VLVA 445 (666)
T 3o8b_A 385 YG-KAIP-------IE--AIRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPT--IGDVVVVA 445 (666)
T ss_dssp TT-EEEC-------GG--GSSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCS--SSCEEEEE
T ss_pred HH-hhhh-------hh--hccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHh--CCCcEEEE
Confidence 00 0000 11 125689999999999999999999999999999999999764 444 56699999
Q ss_pred ecccccccCCCCCEEE----------EcC-----------CCCCchhhhhhhcccccCCCcceEEEEeeCCcHHH
Q 047490 257 TDLAARGLDLDVDHVI----------MFD-----------FPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310 (323)
Q Consensus 257 t~~~~~Gid~~~~~vi----------~~~-----------~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~ 310 (323)
|+++++|+|+++++|| +|| .|.+...|.||+||+|| |+.|. +.|+++.|...
T Consensus 446 TdVaerGIDIdV~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 446 TDALMTGYTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp CTTHHHHCCCCBSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred CChHHccCCCCCcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 9999999999999888 566 89999999999999999 89999 99998776543
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.3e-33 Score=246.05 Aligned_cols=248 Identities=15% Similarity=0.137 Sum_probs=163.3
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHH---------HHHHHcCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI---------LQHIEDGN 86 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l---------~~~~~~~~ 86 (323)
++++++|++||++|+.|+++.++.+. +....+.. . .++||+.+ ...+. ..
T Consensus 36 ~~~~~lil~Ptr~La~Q~~~~l~~~~------v~~~~~~~------~--------~v~Tp~~l~~~l~~~~l~~~~~-~~ 94 (440)
T 1yks_A 36 RRLRTLVLAPTRVVLSEMKEAFHGLD------VKFHTQAF------S--------AHGSGREVIDAMCHATLTYRML-EP 94 (440)
T ss_dssp TTCCEEEEESSHHHHHHHHHHTTTSC------EEEESSCC------C--------CCCCSSCCEEEEEHHHHHHHHT-SS
T ss_pred cCCeEEEEcchHHHHHHHHHHHhcCC------eEEecccc------e--------eccCCccceeeecccchhHhhh-Cc
Confidence 36799999999999999999887542 22111110 0 24455443 22222 23
Q ss_pred CCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccc
Q 047490 87 MVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKK 166 (323)
Q Consensus 87 ~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (323)
..+++++++|+||+|++ +.++...+..+...... .+.++++||||+++....+... . ..
T Consensus 95 ~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~-------~~~~~l~~SAT~~~~~~~~~~~----~---------~~ 153 (440)
T 1yks_A 95 TRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARA-------NESATILMTATPPGTSDEFPHS----N---------GE 153 (440)
T ss_dssp SCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHT-------TSCEEEEECSSCTTCCCSSCCC----S---------SC
T ss_pred ccccCccEEEEECcccc-CcchHHHHHHHHHHhcc-------CCceEEEEeCCCCchhhhhhhc----C---------CC
Confidence 45789999999999987 22222222222222211 2359999999998765421110 0 00
Q ss_pred cccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccc
Q 047490 167 IASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN 246 (323)
Q Consensus 167 ~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 246 (323)
+.......+. . ....++..+.+ .++++||||++++.++.+++.|+..+..+..+|| .+|.++++.|++
T Consensus 154 ---~~~~~~~~~~-~-~~~~~~~~l~~---~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~ 221 (440)
T 1yks_A 154 ---IEDVQTDIPS-E-PWNTGHDWILA---DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQ 221 (440)
T ss_dssp ---EEEEECCCCS-S-CCSSSCHHHHH---CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------
T ss_pred ---eeEeeeccCh-H-HHHHHHHHHHh---cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcC
Confidence 0000000111 1 01111122222 3679999999999999999999999999999999 368899999999
Q ss_pred cCCCCCEEEEecccccccCCCCCEEEE-------------------cCCCCCchhhhhhhcccccC-CCcceEEEEe---
Q 047490 247 EDGDCPTLVCTDLAARGLDLDVDHVIM-------------------FDFPLNSIDYLHRTGRTARM-GAKGKVTSLV--- 303 (323)
Q Consensus 247 ~~g~~~ilv~t~~~~~Gid~~~~~vi~-------------------~~~p~s~~~~~Q~~GR~~R~-~~~g~~~~~~--- 303 (323)
|+.+|||||+++++|+|+++++||+ ++.|.+..+|.||+||+||. |..|.|++++
T Consensus 222 --g~~~vLVaT~v~e~GiDipv~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~~~~ 299 (440)
T 1yks_A 222 --KKPDFILATDIAEMGANLCVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPT 299 (440)
T ss_dssp --CCCSEEEESSSTTCCTTCCCSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred --CCceEEEECChhheeeccCceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEeccC
Confidence 9999999999999999999988886 88899999999999999998 6899999996
Q ss_pred eCCcHHHHHHHHHHHH
Q 047490 304 AKKDVLLADRIEEAIR 319 (323)
Q Consensus 304 ~~~~~~~~~~i~~~l~ 319 (323)
++.+...++.+++.+.
T Consensus 300 ~~~~~~~l~~l~~~~~ 315 (440)
T 1yks_A 300 SENNAHHVCWLEASML 315 (440)
T ss_dssp CCCCTTBHHHHHHHHH
T ss_pred ChhhhhhhhhhhHHhc
Confidence 6777778888877663
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-30 Score=234.48 Aligned_cols=268 Identities=18% Similarity=0.281 Sum_probs=184.1
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCc
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIK 93 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~ 93 (323)
..+..++||||| .+|+.||.++++++.+. .++..++|+... ....+++|+|+||+.+.+... +....++
T Consensus 83 ~~~~~~~LIv~P-~~l~~qw~~e~~~~~~~--~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~ 151 (500)
T 1z63_A 83 ENELTPSLVICP-LSVLKNWEEELSKFAPH--LRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWK 151 (500)
T ss_dssp TTCCSSEEEEEC-STTHHHHHHHHHHHCTT--SCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEE
T ss_pred cCCCCCEEEEcc-HHHHHHHHHHHHHHCCC--ceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcC
Confidence 445678999999 56999999999999863 466666665422 122346899999999865433 2345789
Q ss_pred EEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhh-HHH-------------------------
Q 047490 94 YLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAV-QKL------------------------- 147 (323)
Q Consensus 94 ~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~-~~~------------------------- 147 (323)
+||+||||++.+.. ......+..+... +.+++||||.... .+.
T Consensus 152 ~vIvDEaH~~kn~~--~~~~~~l~~l~~~---------~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~ 220 (500)
T 1z63_A 152 YIVIDEAQNIKNPQ--TKIFKAVKELKSK---------YRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATP 220 (500)
T ss_dssp EEEEETGGGGSCTT--SHHHHHHHTSCEE---------EEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHH
T ss_pred EEEEeCccccCCHh--HHHHHHHHhhccC---------cEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccc
Confidence 99999999986543 3344445444332 7899999995431 111
Q ss_pred -----------HHHHhcCceeeecccc----ccccccceeeEEecc----------------------------------
Q 047490 148 -----------VDEECQGIAHLRTSTL----HKKIASARHDFIKLS---------------------------------- 178 (323)
Q Consensus 148 -----------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~---------------------------------- 178 (323)
+...+.. ..++.... ....+........+.
T Consensus 221 ~~~~~~~~~~~l~~~l~~-~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (500)
T 1z63_A 221 IKKGDNMAKEELKAIISP-FILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILS 299 (500)
T ss_dssp HHTTCHHHHHHHHHHHTT-TEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHhh-HeeeecccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHH
Confidence 1111111 11110000 001111111111111
Q ss_pred ----------------------CChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC-CCeeEEecCCCCHH
Q 047490 179 ----------------------GSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN-QISTVNYHGEVPAQ 235 (323)
Q Consensus 179 ----------------------~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~ 235 (323)
....|...+.+++.+....+.++||||++...++.+.+.|... +..+..+||+++..
T Consensus 300 ~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~ 379 (500)
T 1z63_A 300 TLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKK 379 (500)
T ss_dssp HHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHH
T ss_pred HHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHH
Confidence 1235666777777766667889999999999999999999875 88999999999999
Q ss_pred HHHHHHHhccccCC-CCC-EEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceE--EEEeeCC
Q 047490 236 ERVENLNKFKNEDG-DCP-TLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKV--TSLVAKK 306 (323)
Q Consensus 236 ~r~~~~~~f~~~~g-~~~-ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~--~~~~~~~ 306 (323)
+|.+++++|++ + ..+ +|++|+++++|+|+ .+++||++++|+|+..|.|++||++|.|+.+.+ +.++...
T Consensus 380 ~R~~~~~~F~~--~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 380 ERDDIISKFQN--NPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp HHHHHHHHHHH--CTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred HHHHHHHHhcC--CCCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 99999999998 5 344 79999999999999 999999999999999999999999999976654 4455544
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-31 Score=243.28 Aligned_cols=258 Identities=14% Similarity=0.140 Sum_probs=185.6
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEE
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYL 95 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~v 95 (323)
+++++|||+||++|+.|+.+.++.. .+. ..+.. . ......+..+.++|.+.+.+.+... ..+++++++
T Consensus 214 ~~~~vLvl~PtreLa~Qi~~~l~~~------~v~-~~~~~-l---~~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~i 281 (618)
T 2whx_A 214 RRLRTLILAPTRVVAAEMEEALRGL------PIR-YQTPA-V---KSDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLI 281 (618)
T ss_dssp TTCCEEEEESSHHHHHHHHHHTTTS------CEE-ECCTT-S---SCCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEE
T ss_pred CCCeEEEEcChHHHHHHHHHHhcCC------cee-Eeccc-c---eeccCCCceEEEEChHHHHHHHhcc-ccccCCeEE
Confidence 4689999999999999999888632 232 11111 0 0111223467788888887665543 458899999
Q ss_pred eecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEE
Q 047490 96 VLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFI 175 (323)
Q Consensus 96 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (323)
|+||||++ +.++...+..+...+.. .+.|++++|||+++....+.. .....+.... .
T Consensus 282 ViDEah~~-~~~~~~~~~~i~~~l~~-------~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~---~--------- 338 (618)
T 2whx_A 282 VMDEAHFT-DPCSVAARGYISTRVEM-------GEAAAIFMTATPPGSTDPFPQ---SNSPIEDIER---E--------- 338 (618)
T ss_dssp EEESTTCC-SHHHHHHHHHHHHHHHH-------TSCEEEEECSSCTTCCCSSCC---CSSCEEEEEC---C---------
T ss_pred EEECCCCC-CccHHHHHHHHHHHhcc-------cCccEEEEECCCchhhhhhhc---cCCceeeecc---c---------
Confidence 99999997 43455566666655532 134999999999876542111 0110000000 0
Q ss_pred eccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEE
Q 047490 176 KLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255 (323)
Q Consensus 176 ~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv 255 (323)
.+. .+...++..+.+ .++++||||++++.++.+++.|+..+..+..+||+ +|.+++++|++ |+.+|||
T Consensus 339 -~~~--~~~~~ll~~l~~---~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~--g~~~VLV 406 (618)
T 2whx_A 339 -IPE--RSWNTGFDWITD---YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKL--TDWDFVV 406 (618)
T ss_dssp -CCS--SCCSSSCHHHHH---CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHH--SCCSEEE
T ss_pred -CCH--HHHHHHHHHHHh---CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcC--CCcEEEE
Confidence 000 011122222322 35799999999999999999999999999999984 78889999999 9999999
Q ss_pred EecccccccCCCCCEE--------------------EEcCCCCCchhhhhhhcccccCCC-cceEEEEee---CCcHHHH
Q 047490 256 CTDLAARGLDLDVDHV--------------------IMFDFPLNSIDYLHRTGRTARMGA-KGKVTSLVA---KKDVLLA 311 (323)
Q Consensus 256 ~t~~~~~Gid~~~~~v--------------------i~~~~p~s~~~~~Q~~GR~~R~~~-~g~~~~~~~---~~~~~~~ 311 (323)
||+++++|+|+++++| |+++.|.+..+|.||+||+||.|. .|.++++++ ..|...+
T Consensus 407 aTdv~~rGiDi~v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l 486 (618)
T 2whx_A 407 TTDISEMGANFRAGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHA 486 (618)
T ss_dssp ECGGGGTTCCCCCSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCH
T ss_pred ECcHHHcCcccCceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHH
Confidence 9999999999998888 667779999999999999999974 899999998 7788888
Q ss_pred HHHHHHHHh
Q 047490 312 DRIEEAIRK 320 (323)
Q Consensus 312 ~~i~~~l~~ 320 (323)
+.+++.+..
T Consensus 487 ~~le~~i~l 495 (618)
T 2whx_A 487 HWTEAKMLL 495 (618)
T ss_dssp HHHHHHHHH
T ss_pred HHHHhHhcc
Confidence 888876643
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-30 Score=232.75 Aligned_cols=242 Identities=14% Similarity=0.151 Sum_probs=168.1
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEE
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYL 95 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~v 95 (323)
+++++||++||++|+.|+.+.+..+ .+........ .....+..|.++|++.+.+.+... ..++++++|
T Consensus 47 ~~~~~lvl~Ptr~La~Q~~~~l~g~------~v~~~~~~~~-----~~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~i 114 (451)
T 2jlq_A 47 RRLRTLILAPTRVVAAEMEEALRGL------PIRYQTPAVK-----SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLI 114 (451)
T ss_dssp TTCCEEEEESSHHHHHHHHHHTTTS------CEEECCTTCS-----CCCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEE
T ss_pred cCCcEEEECCCHHHHHHHHHHhcCc------eeeeeecccc-----ccCCCCceEEEEChHHHHHHhhCc-ccccCCCEE
Confidence 4689999999999999999988532 2222111110 012334579999999998777654 557899999
Q ss_pred eecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEE
Q 047490 96 VLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFI 175 (323)
Q Consensus 96 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (323)
|+||+|++ +..+......+..... ..+.+++++|||+++...... .......... ...+ ...+
T Consensus 115 ViDEah~~-~~~~~~~~~~~~~~~~-------~~~~~~i~~SAT~~~~~~~~~---~~~~~~~~~~---~~~p--~~~~- 177 (451)
T 2jlq_A 115 VMDEAHFT-DPCSVAARGYISTRVE-------MGEAAAIFMTATPPGSTDPFP---QSNSPIEDIE---REIP--ERSW- 177 (451)
T ss_dssp EEETTTCC-SHHHHHHHHHHHHHHH-------TTSCEEEEECSSCTTCCCSSC---CCSSCEEEEE---CCCC--SSCC-
T ss_pred EEeCCccC-CcchHHHHHHHHHhhc-------CCCceEEEEccCCCccchhhh---cCCCceEecC---ccCC--chhh-
Confidence 99999976 2111222222211111 123599999999986543221 1111111100 0000 0001
Q ss_pred eccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEE
Q 047490 176 KLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255 (323)
Q Consensus 176 ~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv 255 (323)
. .+.+.+.. .++++||||++++.++.+++.|+..+..+..+||++. +.+++.|++ |+.+|||
T Consensus 178 -----~----~~~~~l~~---~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~--g~~~vLV 239 (451)
T 2jlq_A 178 -----N----TGFDWITD---YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKL--TDWDFVV 239 (451)
T ss_dssp -----S----SSCHHHHH---CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGS--SCCSEEE
T ss_pred -----H----HHHHHHHh---CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhcc--CCceEEE
Confidence 0 01122222 3569999999999999999999999999999999753 678999999 9999999
Q ss_pred EecccccccCC-CCCEEEEcC--------------------CCCCchhhhhhhcccccCCC-cceEEEEeeC
Q 047490 256 CTDLAARGLDL-DVDHVIMFD--------------------FPLNSIDYLHRTGRTARMGA-KGKVTSLVAK 305 (323)
Q Consensus 256 ~t~~~~~Gid~-~~~~vi~~~--------------------~p~s~~~~~Q~~GR~~R~~~-~g~~~~~~~~ 305 (323)
||+++++|+|+ + ++||++| .|.|...|.||+||+||.|. .|.++++...
T Consensus 240 aT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 240 TTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp ECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred ECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99999999999 7 9999999 99999999999999999997 8888888754
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-30 Score=251.48 Aligned_cols=137 Identities=22% Similarity=0.394 Sum_probs=119.5
Q ss_pred ChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhh-CCCeeEEecCCCCHHHHHHHHHhccccCCC--CCEEEE
Q 047490 180 SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE-NQISTVNYHGEVPAQERVENLNKFKNEDGD--CPTLVC 256 (323)
Q Consensus 180 ~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~--~~ilv~ 256 (323)
...|...+.+++.. ..+.++||||++...++.+++.|++ .++.+..+||+|+..+|..++++|++ |+ ++||||
T Consensus 487 ~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~--g~~~~~vLva 562 (968)
T 3dmq_A 487 FDPRVEWLMGYLTS--HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAE--EDTGAQVLLC 562 (968)
T ss_dssp TSHHHHHHHHHHHH--TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHS--TTSSCEEEEC
T ss_pred ccHHHHHHHHHHHh--CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhC--CCCcccEEEe
Confidence 34588888888876 3678999999999999999999985 59999999999999999999999999 76 999999
Q ss_pred ecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHh
Q 047490 257 TDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRK 320 (323)
Q Consensus 257 t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~ 320 (323)
|+++++|+|+ ++++||++++|+++..|.|++||+||.|+.|.++++....+....+.+.+.+.+
T Consensus 563 T~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~ 627 (968)
T 3dmq_A 563 SEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHE 627 (968)
T ss_dssp SCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHH
T ss_pred cchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHHh
Confidence 9999999999 999999999999999999999999999998877766655555555566665543
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=244.02 Aligned_cols=266 Identities=15% Similarity=0.185 Sum_probs=185.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEe
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLV 96 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vI 96 (323)
+.+++|++|+++|+.|+++.+.+... ..+....|..... ......+.+|+++||+.+.+.+... ..+.++++||
T Consensus 140 g~~ilvl~P~r~La~q~~~~l~~~~~---~~v~~~vG~~i~~--~~~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lI 213 (773)
T 2xau_A 140 NTQVACTQPRRVAAMSVAQRVAEEMD---VKLGEEVGYSIRF--ENKTSNKTILKYMTDGMLLREAMED-HDLSRYSCII 213 (773)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHTT---CCBTTTEEEEETT--EEECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEE
T ss_pred CceEEecCchHHHHHHHHHHHHHHhC---Cchhheecceecc--ccccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEE
Confidence 66899999999999999988766542 2222222211111 1112345789999999998877654 4588999999
Q ss_pred ecchhh-hhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEE
Q 047490 97 LDEADT-MFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFI 175 (323)
Q Consensus 97 iDE~h~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (323)
+||+|. .++. +....++..+.... .+.+++++|||++.. .+..++.....+..... ...+..+|.
T Consensus 214 lDEah~R~ld~---d~~~~~l~~l~~~~-----~~~~iIl~SAT~~~~---~l~~~~~~~~vi~v~gr---~~pv~~~~~ 279 (773)
T 2xau_A 214 LDEAHERTLAT---DILMGLLKQVVKRR-----PDLKIIIMSATLDAE---KFQRYFNDAPLLAVPGR---TYPVELYYT 279 (773)
T ss_dssp ECSGGGCCHHH---HHHHHHHHHHHHHC-----TTCEEEEEESCSCCH---HHHHHTTSCCEEECCCC---CCCEEEECC
T ss_pred ecCccccccch---HHHHHHHHHHHHhC-----CCceEEEEeccccHH---HHHHHhcCCCcccccCc---ccceEEEEe
Confidence 999995 3331 11122222222221 134999999999643 22334433322222211 122333333
Q ss_pred eccCChhHHH----HHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhh-----------CCCeeEEecCCCCHHHHHHH
Q 047490 176 KLSGSENKLE----ALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE-----------NQISTVNYHGEVPAQERVEN 240 (323)
Q Consensus 176 ~~~~~~~k~~----~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~-----------~~~~~~~~~~~~~~~~r~~~ 240 (323)
... ..+... .+.+.... ..++++||||+++++++.+++.|++ .+..+..+||+|+..+|..+
T Consensus 280 ~~~-~~~~~~~~l~~l~~~~~~--~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v 356 (773)
T 2xau_A 280 PEF-QRDYLDSAIRTVLQIHAT--EEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRI 356 (773)
T ss_dssp SSC-CSCHHHHHHHHHHHHHHH--SCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGG
T ss_pred cCC-chhHHHHHHHHHHHHHHh--cCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHH
Confidence 322 233333 33333322 2468999999999999999999875 57789999999999999999
Q ss_pred HHhcc-----ccCCCCCEEEEecccccccCC-CCCEEEEcCC------------------CCCchhhhhhhcccccCCCc
Q 047490 241 LNKFK-----NEDGDCPTLVCTDLAARGLDL-DVDHVIMFDF------------------PLNSIDYLHRTGRTARMGAK 296 (323)
Q Consensus 241 ~~~f~-----~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~------------------p~s~~~~~Q~~GR~~R~~~~ 296 (323)
++.|. + |..+|||||+++++|+|+ ++++||++|. |.|...|.||+||+||. ..
T Consensus 357 ~~~f~~~~~~~--g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~ 433 (773)
T 2xau_A 357 FEPAPESHNGR--PGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RP 433 (773)
T ss_dssp GSCCCCCSSSS--CCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SS
T ss_pred HhhcccccCCC--CceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CC
Confidence 99999 7 999999999999999999 9999999887 88999999999999999 79
Q ss_pred ceEEEEeeCCcH
Q 047490 297 GKVTSLVAKKDV 308 (323)
Q Consensus 297 g~~~~~~~~~~~ 308 (323)
|.|+.+++..+.
T Consensus 434 G~~~~l~~~~~~ 445 (773)
T 2xau_A 434 GKCFRLYTEEAF 445 (773)
T ss_dssp EEEEESSCHHHH
T ss_pred CEEEEEecHHHh
Confidence 999999986544
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6.5e-30 Score=226.30 Aligned_cols=241 Identities=11% Similarity=0.167 Sum_probs=162.1
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEE
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYL 95 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~v 95 (323)
++++++|++||++|+.|+.+.++ +..+....++... ....+..+.+.|.+.+.+.+.. ...++++++|
T Consensus 30 ~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~v 97 (431)
T 2v6i_A 30 KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS-----ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLY 97 (431)
T ss_dssp TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC--------------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEE
T ss_pred CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc-----cCCCCceEEEEchHHHHHHHhc-CccccCCCEE
Confidence 46799999999999999988775 3344444443111 1112235677888888776665 4568899999
Q ss_pred eecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEE
Q 047490 96 VLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFI 175 (323)
Q Consensus 96 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (323)
|+||+|++ +..+.. ....+..+.. ..+.+++++|||+++....+.. . .. .+.....
T Consensus 98 ViDEaH~~-~~~~~~-~~~~l~~~~~------~~~~~~l~~SAT~~~~~~~~~~----~---------~~---~i~~~~~ 153 (431)
T 2v6i_A 98 IMDEAHFL-DPASVA-ARGYIETRVS------MGDAGAIFMTATPPGTTEAFPP----S---------NS---PIIDEET 153 (431)
T ss_dssp EEESTTCC-SHHHHH-HHHHHHHHHH------TTSCEEEEEESSCTTCCCSSCC----C---------SS---CCEEEEC
T ss_pred EEeCCccC-CccHHH-HHHHHHHHhh------CCCCcEEEEeCCCCcchhhhcC----C---------CC---ceeeccc
Confidence 99999986 211122 2222222211 0235999999999874321100 0 00 0000000
Q ss_pred eccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEE
Q 047490 176 KLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255 (323)
Q Consensus 176 ~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv 255 (323)
..+ ..+...+.+.+.+ .++++||||++++.++.+++.|++.+..+..+||+ +|++++++|++ |+.+|||
T Consensus 154 ~~~--~~~~~~~~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~--g~~~vLV 222 (431)
T 2v6i_A 154 RIP--DKAWNSGYEWITE---FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKS--EKWDFVI 222 (431)
T ss_dssp CCC--SSCCSSCCHHHHS---CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHH--SCCSEEE
T ss_pred cCC--HHHHHHHHHHHHc---CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcC--CCCeEEE
Confidence 001 1111222233333 35689999999999999999999999999999997 67889999999 9999999
Q ss_pred EecccccccCCCCCE-----------------EEEcCCCCCchhhhhhhcccccCCC-cceEEEEe
Q 047490 256 CTDLAARGLDLDVDH-----------------VIMFDFPLNSIDYLHRTGRTARMGA-KGKVTSLV 303 (323)
Q Consensus 256 ~t~~~~~Gid~~~~~-----------------vi~~~~p~s~~~~~Q~~GR~~R~~~-~g~~~~~~ 303 (323)
||+++++|+|+++.+ ||+++.|.+..+|.||+||+||.|. .|.++++.
T Consensus 223 aT~v~e~GiDip~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 223 TTDISEMGANFKADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp ECGGGGTSCCCCCSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred ECchHHcCcccCCcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 999999999996655 5777889999999999999999985 44555554
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-29 Score=229.36 Aligned_cols=246 Identities=20% Similarity=0.292 Sum_probs=178.2
Q ss_pred ccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEee
Q 047490 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVL 97 (323)
Q Consensus 18 ~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vIi 97 (323)
+..+|++||++|+.|+++.+++. ++.+..++|+...... .-....+++++|++.+. ..+.++++|+
T Consensus 180 ~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~~~iv~--TpGr~~~il~~T~e~~~--------l~~~v~lvVI 245 (677)
T 3rc3_A 180 KSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEERVTVQ--PNGKQASHVSCTVEMCS--------VTTPYEVAVI 245 (677)
T ss_dssp SSEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSCEECCS--TTCCCCSEEEEEGGGCC--------SSSCEEEEEE
T ss_pred CCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCeeEEec--CCCcccceeEecHhHhh--------hcccCCEEEE
Confidence 34599999999999999999886 5678888887543110 00112579999986442 2467899999
Q ss_pred cchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEec
Q 047490 98 DEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKL 177 (323)
Q Consensus 98 DE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (323)
||+|++.+.+++..+..++..+... +++++++|||.+ ........ ......+..... . ....+ .
T Consensus 246 DEaH~l~d~~~g~~~~~~l~~l~~~-------~i~il~~SAT~~-~i~~l~~~-~~~~~~v~~~~r--~---~~l~~--~ 309 (677)
T 3rc3_A 246 DEIQMIRDPARGWAWTRALLGLCAE-------EVHLCGEPAAID-LVMELMYT-TGEEVEVRDYKR--L---TPISV--L 309 (677)
T ss_dssp CSGGGGGCTTTHHHHHHHHHHCCEE-------EEEEEECGGGHH-HHHHHHHH-HTCCEEEEECCC--S---SCEEE--C
T ss_pred ecceecCCccchHHHHHHHHccCcc-------ceEEEeccchHH-HHHHHHHh-cCCceEEEEeee--c---chHHH--H
Confidence 9999999888998888888877631 358999999842 22222222 222222111100 0 00000 0
Q ss_pred cCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEe
Q 047490 178 SGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257 (323)
Q Consensus 178 ~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t 257 (323)
... +..+.. .....+|||++++.++.+++.|++.+..+..+||+|++.+|..+++.|+.++|..+|||||
T Consensus 310 ~~~-------l~~l~~---~~~g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVAT 379 (677)
T 3rc3_A 310 DHA-------LESLDN---LRPGDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVAT 379 (677)
T ss_dssp SSC-------CCSGGG---CCTTEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEEC
T ss_pred HHH-------HHHHHh---cCCCCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeC
Confidence 000 001111 1234588999999999999999999999999999999999999999999755789999999
Q ss_pred cccccccCCCCCEEEEcCC--------------CCCchhhhhhhcccccCCCc---ceEEEEe
Q 047490 258 DLAARGLDLDVDHVIMFDF--------------PLNSIDYLHRTGRTARMGAK---GKVTSLV 303 (323)
Q Consensus 258 ~~~~~Gid~~~~~vi~~~~--------------p~s~~~~~Q~~GR~~R~~~~---g~~~~~~ 303 (323)
+++++|+|+++++||+++. |.|..+|.||+||+||.|.. |.|+.+.
T Consensus 380 di~e~GlDi~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~ 442 (677)
T 3rc3_A 380 DAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMN 442 (677)
T ss_dssp GGGGSSCCCCBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESS
T ss_pred cHHHCCcCcCccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEe
Confidence 9999999999999999998 77999999999999999964 5555544
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-30 Score=236.90 Aligned_cols=254 Identities=14% Similarity=0.179 Sum_probs=152.2
Q ss_pred CCccEEEEcCCHHHHHHHH-HHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHc----CCCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVF-RVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIED----GNMVYG 90 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~----~~~~~~ 90 (323)
+++++|||+|+++|+.|+. +.++.+.. .+..+.++ ....+.+|+|+||++|...... ..+...
T Consensus 234 ~~~~vlil~P~~~L~~Q~~~~~~~~~~~----~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~ 301 (590)
T 3h1t_A 234 RKPRILFLADRNVLVDDPKDKTFTPFGD----ARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQD 301 (590)
T ss_dssp SCCCEEEEEC-----------CCTTTCS----SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhcch----hhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCC
Confidence 6789999999999999998 77776643 33333322 2234579999999999876542 123456
Q ss_pred CCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecccc---cccc
Q 047490 91 DIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTL---HKKI 167 (323)
Q Consensus 91 ~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 167 (323)
.+++||+||||++.... ...+..++..+... +++++||||...........+..+........ ....
T Consensus 302 ~~~lvIiDEaH~~~~~~-~~~~~~il~~~~~~---------~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l 371 (590)
T 3h1t_A 302 FFDLIIIDECHRGSARD-NSNWREILEYFEPA---------FQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFL 371 (590)
T ss_dssp SCSEEEESCCC----------CHHHHHHSTTS---------EEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSS
T ss_pred ccCEEEEECCccccccc-hHHHHHHHHhCCcc---------eEEEeccccccccchhHHHHcCCceEecCHHHHhhCCcc
Confidence 79999999999986532 24456666665432 79999999986544333333322211100000 0000
Q ss_pred ccceeeEEec---------------------------cCC-------hhHHHH----HHHHhccCCCCCCeEEEEecCcc
Q 047490 168 ASARHDFIKL---------------------------SGS-------ENKLEA----LLQVLEPSLSKGNKVMVFCNTLN 209 (323)
Q Consensus 168 ~~~~~~~~~~---------------------------~~~-------~~k~~~----l~~~l~~~~~~~~~~lvf~~~~~ 209 (323)
.......... ... ..+... +.+.+... +.++++||||+++.
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~-~~~~k~lVF~~~~~ 450 (590)
T 3h1t_A 372 APYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRT-DRFAKTIVFCVDQE 450 (590)
T ss_dssp CCEEEEEEEETTCC-----------------------CCSHHHHHHHHHTHHHHHHHHHHHHHHH-CTTSEEEEEESSHH
T ss_pred CCcEEEEeeeeeeccccccccccccccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhc-CCCccEEEEECCHH
Confidence 0000000000 000 011122 32333322 45689999999999
Q ss_pred cHHHHHHHHhhCCC--------eeEEecCCCCHHHHHHHHHhccccCCCCC---EEEEecccccccCC-CCCEEEEcCCC
Q 047490 210 SSRAVDHFLNENQI--------STVNYHGEVPAQERVENLNKFKNEDGDCP---TLVCTDLAARGLDL-DVDHVIMFDFP 277 (323)
Q Consensus 210 ~~~~l~~~l~~~~~--------~~~~~~~~~~~~~r~~~~~~f~~~~g~~~---ilv~t~~~~~Gid~-~~~~vi~~~~p 277 (323)
+|+.+++.|++.+. .+..+||.++. +|++++++|++ |+.+ |++||+++++|+|+ ++++||++++|
T Consensus 451 ~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~--~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~ 527 (590)
T 3h1t_A 451 HADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQE--LETSTPVILTTSQLLTTGVDAPTCKNVVLARVV 527 (590)
T ss_dssp HHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHC--TTCCCCCEEEESSTTTTTCCCTTEEEEEEESCC
T ss_pred HHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhC--CCCCCCEEEEECChhhcCccchheeEEEEEecC
Confidence 99999999976543 26778998763 79999999998 6544 78888999999999 99999999999
Q ss_pred CCchhhhhhhcccccCCC
Q 047490 278 LNSIDYLHRTGRTARMGA 295 (323)
Q Consensus 278 ~s~~~~~Q~~GR~~R~~~ 295 (323)
+|...|.|++||+||.+.
T Consensus 528 ~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 528 NSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp CCHHHHHHHHTTSCCCBG
T ss_pred CChHHHHHHHhhhcccCc
Confidence 999999999999999874
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-29 Score=233.31 Aligned_cols=256 Identities=16% Similarity=0.198 Sum_probs=172.5
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEE
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYL 95 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~v 95 (323)
++++++|++||++|+.|+.+.++.+. +. ...+.. ......+.-+-+.+.+.+.+.+... ..+++++++
T Consensus 269 ~~~~~lilaPTr~La~Q~~~~l~~~~----i~--~~~~~l-----~~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lv 336 (673)
T 2wv9_A 269 KRLRTAVLAPTRVVAAEMAEALRGLP----VR--YLTPAV-----QREHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLF 336 (673)
T ss_dssp TTCCEEEEESSHHHHHHHHHHTTTSC----CE--ECCC--------CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEE
T ss_pred CCCcEEEEccHHHHHHHHHHHHhcCC----ee--eecccc-----cccCCHHHHHHHHHhhhhHHHHhcc-cccccceEE
Confidence 46899999999999999999887652 11 111000 0011111234445555555444443 468899999
Q ss_pred eecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEE
Q 047490 96 VLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFI 175 (323)
Q Consensus 96 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (323)
|+||+|++. ..+......+...+.. .+.++++||||+++....+.. . .. .+.....
T Consensus 337 ViDEaH~~~-~~~~~~~~~l~~~~~~-------~~~~vl~~SAT~~~~i~~~~~----~---------~~---~i~~v~~ 392 (673)
T 2wv9_A 337 VMDEAHFTD-PASIAARGYIATRVEA-------GEAAAIFMTATPPGTSDPFPD----T---------NS---PVHDVSS 392 (673)
T ss_dssp EEESTTCCC-HHHHHHHHHHHHHHHT-------TSCEEEEECSSCTTCCCSSCC----C---------SS---CEEEEEC
T ss_pred EEeCCcccC-ccHHHHHHHHHHhccc-------cCCcEEEEcCCCChhhhhhcc----c---------CC---ceEEEee
Confidence 999999871 1111122222222211 134999999999866432110 0 00 0000000
Q ss_pred eccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEE
Q 047490 176 KLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255 (323)
Q Consensus 176 ~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv 255 (323)
.... . ....++..+.+ .++++||||++++.++.+++.|++.+..+..+||+ +|.++++.|++ |+.+|||
T Consensus 393 ~~~~-~-~~~~~l~~l~~---~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~--g~~~VLV 461 (673)
T 2wv9_A 393 EIPD-R-AWSSGFEWITD---YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKN--GDWDFVI 461 (673)
T ss_dssp CCCS-S-CCSSCCHHHHS---CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGT--CCCSEEE
T ss_pred ecCH-H-HHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHC--CCceEEE
Confidence 0110 1 11112222222 46799999999999999999999999999999994 88999999999 9999999
Q ss_pred EecccccccCCCCCEEEE--------------------cCCCCCchhhhhhhcccccC-CCcceEEEEe---eCCcHHHH
Q 047490 256 CTDLAARGLDLDVDHVIM--------------------FDFPLNSIDYLHRTGRTARM-GAKGKVTSLV---AKKDVLLA 311 (323)
Q Consensus 256 ~t~~~~~Gid~~~~~vi~--------------------~~~p~s~~~~~Q~~GR~~R~-~~~g~~~~~~---~~~~~~~~ 311 (323)
||+++++|+|+++++||+ ++.|.+..+|.||+||+||. |+.|.|++++ +..|...+
T Consensus 462 aTdv~e~GIDipv~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l 541 (673)
T 2wv9_A 462 TTDISEMGANFGASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLA 541 (673)
T ss_dssp ECGGGGTTCCCCCSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBH
T ss_pred ECchhhcceeeCCcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHH
Confidence 999999999999999998 56889999999999999999 6899999996 56777677
Q ss_pred HHHHHHH
Q 047490 312 DRIEEAI 318 (323)
Q Consensus 312 ~~i~~~l 318 (323)
+.++..+
T Consensus 542 ~~ie~~~ 548 (673)
T 2wv9_A 542 HWTEAKI 548 (673)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776655
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-29 Score=226.86 Aligned_cols=243 Identities=15% Similarity=0.157 Sum_probs=161.5
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEE
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYL 95 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~v 95 (323)
+++++||++||++|+.|+.+.++.+ .+....+.... ....+..+.++|.+.+.+.+... ..++++++|
T Consensus 49 ~~~~~lvl~Ptr~La~Q~~~~l~g~------~v~~~~~~~~~-----~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~i 116 (459)
T 2z83_A 49 QRLRTAVLAPTRVVAAEMAEALRGL------PVRYQTSAVQR-----EHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLF 116 (459)
T ss_dssp TTCCEEEEECSHHHHHHHHHHTTTS------CEEECC-------------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEE
T ss_pred CCCcEEEECchHHHHHHHHHHhcCc------eEeEEeccccc-----CCCCCcEEEEEchHHHHHHhhcc-ccccCCcEE
Confidence 4679999999999999999988732 22222111110 01223357788888887666543 457899999
Q ss_pred eecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEE
Q 047490 96 VLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFI 175 (323)
Q Consensus 96 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (323)
|+||+|++.. ........+...... .+.+++++|||++.....+... ..+... ...
T Consensus 117 ViDEaH~~~~-~~~~~~~~~~~~~~~-------~~~~~il~SAT~~~~~~~~~~~--~~pi~~-----------~~~--- 172 (459)
T 2z83_A 117 VMDEAHFTDP-ASIAARGYIATKVEL-------GEAAAIFMTATPPGTTDPFPDS--NAPIHD-----------LQD--- 172 (459)
T ss_dssp EESSTTCCSH-HHHHHHHHHHHHHHT-------TSCEEEEECSSCTTCCCSSCCC--SSCEEE-----------EEC---
T ss_pred EEECCccCCc-hhhHHHHHHHHHhcc-------CCccEEEEEcCCCcchhhhccC--CCCeEE-----------ecc---
Confidence 9999997310 001111111111110 2459999999998654321100 000000 000
Q ss_pred eccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEE
Q 047490 176 KLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255 (323)
Q Consensus 176 ~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv 255 (323)
..+. .+...+.+.+.. .++++||||++++.++.+++.|+..+..+..+||+ +|..+++.|++ |+.+|||
T Consensus 173 ~~~~--~~~~~~~~~l~~---~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~--g~~~iLV 241 (459)
T 2z83_A 173 EIPD--RAWSSGYEWITE---YAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKN--GDWDFVI 241 (459)
T ss_dssp CCCS--SCCSSCCHHHHH---CCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSS--CCCSEEE
T ss_pred cCCc--chhHHHHHHHHh---cCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccC--CCceEEE
Confidence 0000 000111122222 35799999999999999999999999999999995 67788999999 9999999
Q ss_pred EecccccccCC-CCCEEEE--------------------cCCCCCchhhhhhhcccccCCC-cceEEEEeeCC
Q 047490 256 CTDLAARGLDL-DVDHVIM--------------------FDFPLNSIDYLHRTGRTARMGA-KGKVTSLVAKK 306 (323)
Q Consensus 256 ~t~~~~~Gid~-~~~~vi~--------------------~~~p~s~~~~~Q~~GR~~R~~~-~g~~~~~~~~~ 306 (323)
||+++++|+|+ + ++||+ |+.|.|...|.||+||+||.|. .|.+++++...
T Consensus 242 aT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 242 TTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp ESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred ECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 99999999999 7 99999 6699999999999999999997 99999999875
|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.1e-28 Score=227.81 Aligned_cols=285 Identities=20% Similarity=0.291 Sum_probs=195.1
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccc------------ccCCCCCEEEeChHHHHHHH
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQED------------SLNNPIDMVVGTPGRILQHI 82 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~Iii~Tp~~l~~~~ 82 (323)
.....+||||| .+|+.||.+++.+|.+ ++++...+|+........ .....++|+|+|++.+....
T Consensus 284 ~~~~~~LIV~P-~sll~qW~~E~~~~~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~ 360 (800)
T 3mwy_W 284 RQNGPHIIVVP-LSTMPAWLDTFEKWAP--DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDR 360 (800)
T ss_dssp SCCSCEEEECC-TTTHHHHHHHHHHHST--TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTH
T ss_pred CCCCCEEEEEC-chHHHHHHHHHHHHCC--CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhH
Confidence 33567899999 7889999999999986 457777777654322111 12235789999999997643
Q ss_pred HcCCCCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchh-hHHH---HH---------
Q 047490 83 EDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKA-VQKL---VD--------- 149 (323)
Q Consensus 83 ~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~-~~~~---~~--------- 149 (323)
.. +....+++||+||||++-+ ........+..+... ..+++||||... ..++ +.
T Consensus 361 ~~--l~~~~w~~vIvDEaH~lkn--~~s~~~~~l~~l~~~---------~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~ 427 (800)
T 3mwy_W 361 AE--LGSIKWQFMAVDEAHRLKN--AESSLYESLNSFKVA---------NRMLITGTPLQNNIKELAALVNFLMPGRFTI 427 (800)
T ss_dssp HH--HHTSEEEEEEETTGGGGCC--SSSHHHHHHTTSEEE---------EEEEECSCCCSSCSHHHHHHHHHHCSCCC--
T ss_pred HH--HhcCCcceeehhhhhhhcC--chhHHHHHHHHhhhc---------cEEEeeCCcCCCCHHHHHHHHHHhCccccCc
Confidence 32 2233689999999999854 334555556555443 689999999421 1111 11
Q ss_pred ---------------------HHhcCceeeeccccc--cccccceeeEEec-----------------------------
Q 047490 150 ---------------------EECQGIAHLRTSTLH--KKIASARHDFIKL----------------------------- 177 (323)
Q Consensus 150 ---------------------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----------------------------- 177 (323)
..+.. ..++..... ...+........+
T Consensus 428 ~~~~~~~~~~~~~~~~~~~L~~~l~p-~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~ 506 (800)
T 3mwy_W 428 DQEIDFENQDEEQEEYIHDLHRRIQP-FILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGH 506 (800)
T ss_dssp -------CCTTHHHHHHHHHHHTTGG-GEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------
T ss_pred hhhhcccccchhHHHHHHHHHHHHhH-HHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccch
Confidence 00000 000000000 0000000000000
Q ss_pred ---------------------------------------------cCChhHHHHHHHHhccCCCCCCeEEEEecCcccHH
Q 047490 178 ---------------------------------------------SGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSR 212 (323)
Q Consensus 178 ---------------------------------------------~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~ 212 (323)
.....|+..|.+++......+.++||||+....++
T Consensus 507 ~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld 586 (800)
T 3mwy_W 507 FSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLD 586 (800)
T ss_dssp CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHH
T ss_pred hhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHH
Confidence 00234677777777777678899999999999999
Q ss_pred HHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccC-CCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhccc
Q 047490 213 AVDHFLNENQISTVNYHGEVPAQERVENLNKFKNED-GDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRT 290 (323)
Q Consensus 213 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~ 290 (323)
.+...|...++.+..+||+++..+|..+++.|++++ +...+|++|.+++.|+|+ .+++||++++|+|+..+.|++||+
T Consensus 587 ~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~ 666 (800)
T 3mwy_W 587 ILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARA 666 (800)
T ss_dssp HHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTT
T ss_pred HHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHH
Confidence 999999999999999999999999999999999832 233589999999999999 999999999999999999999999
Q ss_pred ccCCCcc--eEEEEeeCC--cHHHHHHHHH
Q 047490 291 ARMGAKG--KVTSLVAKK--DVLLADRIEE 316 (323)
Q Consensus 291 ~R~~~~g--~~~~~~~~~--~~~~~~~i~~ 316 (323)
+|.|+.. .++.+++.. |...+....+
T Consensus 667 ~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~ 696 (800)
T 3mwy_W 667 HRIGQKNHVMVYRLVSKDTVEEEVLERARK 696 (800)
T ss_dssp SCSSCCSCEEEEEEEETTSHHHHHHHHHHH
T ss_pred HhcCCCceEEEEEEecCCCHHHHHHHHHHH
Confidence 9999754 455566654 3334444333
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.8e-28 Score=184.59 Aligned_cols=150 Identities=34% Similarity=0.557 Sum_probs=137.3
Q ss_pred cccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccc
Q 047490 167 IASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN 246 (323)
Q Consensus 167 ~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 246 (323)
..++.+.+..+. ...|...|.+++... .++++||||++...++.+++.|...+..+..+||+|+..+|..++++|++
T Consensus 7 ~~~i~~~~~~~~-~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~ 83 (163)
T 2hjv_A 7 TRNIEHAVIQVR-EENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKR 83 (163)
T ss_dssp CCCEEEEEEECC-GGGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred cccceEEEEECC-hHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 445566666554 577999999988764 56799999999999999999999999999999999999999999999999
Q ss_pred cCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHhc
Q 047490 247 EDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRKN 321 (323)
Q Consensus 247 ~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~~ 321 (323)
|+.+|||||+++++|+|+ ++++||++++|++...|.||+||+||.|+.|.++++++..|...++.+++.++.+
T Consensus 84 --g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 157 (163)
T 2hjv_A 84 --GEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFE 157 (163)
T ss_dssp --TSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSC
T ss_pred --CCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCC
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999988653
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.5e-27 Score=217.86 Aligned_cols=108 Identities=19% Similarity=0.316 Sum_probs=97.8
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCC---CEEEEecccccccCC-CCCEEE
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDC---PTLVCTDLAARGLDL-DVDHVI 272 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~---~ilv~t~~~~~Gid~-~~~~vi 272 (323)
.+.++||||+....++.+.+.|...++.+..+||+++..+|.+++++|++ +.. .+|++|.++++|+|+ .+++||
T Consensus 415 ~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~--~~~~~~v~L~st~a~g~Glnl~~a~~Vi 492 (644)
T 1z3i_X 415 TSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNN--PSSPEFIFMLSSKAGGCGLNLIGANRLV 492 (644)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHS--TTCCCCEEEEEGGGSCTTCCCTTEEEEE
T ss_pred CCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcC--CCCCcEEEEEecccccCCcccccCCEEE
Confidence 46899999999999999999999999999999999999999999999998 543 488999999999999 999999
Q ss_pred EcCCCCCchhhhhhhcccccCCCcce--EEEEeeCC
Q 047490 273 MFDFPLNSIDYLHRTGRTARMGAKGK--VTSLVAKK 306 (323)
Q Consensus 273 ~~~~p~s~~~~~Q~~GR~~R~~~~g~--~~~~~~~~ 306 (323)
++|+|||+..+.|++||++|.|+... ++.+++..
T Consensus 493 ~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ 528 (644)
T 1z3i_X 493 MFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTG 528 (644)
T ss_dssp ECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred EECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECC
Confidence 99999999999999999999997654 55556654
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.5e-28 Score=186.68 Aligned_cols=151 Identities=23% Similarity=0.460 Sum_probs=135.2
Q ss_pred cccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccc
Q 047490 167 IASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKN 246 (323)
Q Consensus 167 ~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~ 246 (323)
..++.+.|..+.....|...|.+++... .++++||||++...++.+++.|...+..+..+||+|+..+|..+++.|++
T Consensus 5 ~~~i~q~~~~~~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~ 82 (175)
T 2rb4_A 5 LNNIRQYYVLCEHRKDKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRD 82 (175)
T ss_dssp BCCEEEEEEECSSHHHHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHT
T ss_pred cCCceEEEEEcCChHhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 4467777777776666999999999875 56799999999999999999999999999999999999999999999999
Q ss_pred cCCCCCEEEEecccccccCC-CCCEEEEcCCC------CCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHH
Q 047490 247 EDGDCPTLVCTDLAARGLDL-DVDHVIMFDFP------LNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIR 319 (323)
Q Consensus 247 ~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p------~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~ 319 (323)
|..+|||||+++++|+|+ ++++||++++| .+...|.||+||+||.|+.|.++++++..+...++.+++.++
T Consensus 83 --g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~ 160 (175)
T 2rb4_A 83 --GKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFN 160 (175)
T ss_dssp --TSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHT
T ss_pred --CCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhc
Confidence 999999999999999999 99999999999 899999999999999999999999999999999999999886
Q ss_pred hc
Q 047490 320 KN 321 (323)
Q Consensus 320 ~~ 321 (323)
..
T Consensus 161 ~~ 162 (175)
T 2rb4_A 161 SS 162 (175)
T ss_dssp CC
T ss_pred Cc
Confidence 53
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=184.20 Aligned_cols=149 Identities=28% Similarity=0.522 Sum_probs=131.5
Q ss_pred cceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccC
Q 047490 169 SARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNED 248 (323)
Q Consensus 169 ~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 248 (323)
.+.+.+..+...+.|...|.+++... .++++||||++...++.+++.|+..+..+..+||+|+..+|..+++.|++
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~-- 78 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRS-- 78 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT--
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHc--
Confidence 45666776665555999999998875 56899999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHhc
Q 047490 249 GDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRKN 321 (323)
Q Consensus 249 g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~~ 321 (323)
|+.+|||||+++++|+|+ ++++||++++|++...|.||+||+||.|+.|.++++++..+...++.+++.++..
T Consensus 79 g~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 152 (165)
T 1fuk_A 79 GSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQ 152 (165)
T ss_dssp TSCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCC
T ss_pred CCCEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccC
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999887653
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=188.07 Aligned_cols=165 Identities=25% Similarity=0.434 Sum_probs=132.9
Q ss_pred hcCceeeeccccccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCC
Q 047490 152 CQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGE 231 (323)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~ 231 (323)
+..+..+...........+.+.+..+. ...|...|.+.+... ++++||||++...++.+++.|+..++.+..+||+
T Consensus 12 ~~~p~~i~v~~~~~~~~~i~q~~~~~~-~~~K~~~L~~~l~~~---~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~ 87 (191)
T 2p6n_A 12 DLGTENLYFQSMGAASLDVIQEVEYVK-EEAKMVYLLECLQKT---PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGG 87 (191)
T ss_dssp ----------------CCSEEEEEECC-GGGHHHHHHHHHTTS---CSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTT
T ss_pred cCCCEEEEECCCCCCCcCceEEEEEcC-hHHHHHHHHHHHHhC---CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 344444444333444556667666654 567999999998763 5689999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCC-cHH
Q 047490 232 VPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKK-DVL 309 (323)
Q Consensus 232 ~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~-~~~ 309 (323)
++..+|..+++.|++ |+.+|||||+++++|+|+ ++++||+|++|++...|.||+||+||.|+.|.++++++.. +..
T Consensus 88 ~~~~~R~~~l~~F~~--g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~ 165 (191)
T 2p6n_A 88 KDQEERTKAIEAFRE--GKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDES 165 (191)
T ss_dssp SCHHHHHHHHHHHHH--TSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHH
T ss_pred CCHHHHHHHHHHHhc--CCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHH
Confidence 999999999999999 999999999999999999 9999999999999999999999999999999999999976 788
Q ss_pred HHHHHHHHHHhcC
Q 047490 310 LADRIEEAIRKNE 322 (323)
Q Consensus 310 ~~~~i~~~l~~~~ 322 (323)
.++.+++.++...
T Consensus 166 ~~~~l~~~l~~~~ 178 (191)
T 2p6n_A 166 VLMDLKALLLEAK 178 (191)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcc
Confidence 8999999887643
|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.8e-27 Score=210.97 Aligned_cols=171 Identities=19% Similarity=0.222 Sum_probs=133.1
Q ss_pred eEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccH
Q 047490 132 QTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSS 211 (323)
Q Consensus 132 ~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~ 211 (323)
++.+||+|...+...+.+.+......+ +. ..+.......-........|...+.+.+.+....+.|+||||++...+
T Consensus 411 kL~GMTGTa~te~~Ef~~iY~l~vv~I--Pt-nkp~~R~d~~d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~s 487 (822)
T 3jux_A 411 KLAGMTGTAKTEESEFVQVYGMEVVVI--PT-HKPMIRKDHDDLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKS 487 (822)
T ss_dssp EEEEEESSCGGGHHHHHHHSCCCEEEC--CC-SSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHH
T ss_pred HHeEECCCCchHHHHHHHHhCCeEEEE--CC-CCCcceeecCcEEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHH
Confidence 799999999877766554443332222 21 222222222112223456788999988876545678999999999999
Q ss_pred HHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCCC---------CCEEEEcCCCCCchh
Q 047490 212 RAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLD---------VDHVIMFDFPLNSID 282 (323)
Q Consensus 212 ~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~~---------~~~vi~~~~p~s~~~ 282 (323)
+.+++.|+..++++..+||+....++..+...++. |. |+|||+.+++|+|+. ..+||+++.|.|.+.
T Consensus 488 E~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~--g~--VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~ 563 (822)
T 3jux_A 488 ELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQK--GM--VTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRI 563 (822)
T ss_dssp HHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHST--TC--EEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHH
T ss_pred HHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCC--Ce--EEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHH
Confidence 99999999999999999999766666666677776 64 999999999999983 359999999999999
Q ss_pred hhhhhcccccCCCcceEEEEeeCCcHH
Q 047490 283 YLHRTGRTARMGAKGKVTSLVAKKDVL 309 (323)
Q Consensus 283 ~~Q~~GR~~R~~~~g~~~~~~~~~~~~ 309 (323)
|.||+||+||.|.+|.+++|++..|..
T Consensus 564 y~qriGRTGRqG~~G~a~~fvsleD~l 590 (822)
T 3jux_A 564 DNQLRGRAGRQGDPGESIFFLSLEDDL 590 (822)
T ss_dssp HHHHHTTSSCSSCCCEEEEEEETTSHH
T ss_pred HHHhhCccccCCCCeeEEEEechhHHH
Confidence 999999999999999999999988743
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-27 Score=185.51 Aligned_cols=153 Identities=29% Similarity=0.561 Sum_probs=125.1
Q ss_pred ccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhcc
Q 047490 166 KIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245 (323)
Q Consensus 166 ~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~ 245 (323)
...++.+.+..+. ...|...|.+++... ..+.++||||++...++.+++.|+..+..+..+||+|+..+|..+++.|+
T Consensus 16 ~~~~i~q~~~~v~-~~~K~~~L~~ll~~~-~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~ 93 (185)
T 2jgn_A 16 TSENITQKVVWVE-ESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFR 93 (185)
T ss_dssp CCTTEEEEEEECC-GGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHH
T ss_pred CCCCceEEEEEeC-cHHHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHH
Confidence 3445666666655 567999999988774 35689999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHhcC
Q 047490 246 NEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRKNE 322 (323)
Q Consensus 246 ~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~~~ 322 (323)
+ |+.+|||||+++++|+|+ ++++||++++|+|...|.||+||+||.|+.|.++++++..+...++.+++.++...
T Consensus 94 ~--g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~ 169 (185)
T 2jgn_A 94 S--GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAK 169 (185)
T ss_dssp H--TSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTT
T ss_pred c--CCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhcc
Confidence 9 999999999999999999 99999999999999999999999999999999999999999999999999987653
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-27 Score=182.25 Aligned_cols=148 Identities=26% Similarity=0.505 Sum_probs=133.3
Q ss_pred ccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhcccc
Q 047490 168 ASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNE 247 (323)
Q Consensus 168 ~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~ 247 (323)
..+.+++..+. ...|...|.+++... .++++||||++...++.+++.|...+..+..+||+|+..+|..+++.|++
T Consensus 4 ~~i~q~~~~~~-~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~- 79 (172)
T 1t5i_A 4 HGLQQYYVKLK-DNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKD- 79 (172)
T ss_dssp -CCEEEEEECC-GGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT-
T ss_pred CCeEEEEEECC-hHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHC-
Confidence 34556666554 577999999998865 56799999999999999999999999999999999999999999999999
Q ss_pred CCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCC-cHHHHHHHHHHHHh
Q 047490 248 DGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKK-DVLLADRIEEAIRK 320 (323)
Q Consensus 248 ~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~-~~~~~~~i~~~l~~ 320 (323)
|+.+|||||+++++|+|+ ++++||++++|+|...|.||+||+||.|+.|.++++++.. +...++.+++.++.
T Consensus 80 -g~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~ 153 (172)
T 1t5i_A 80 -FQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEV 153 (172)
T ss_dssp -TSCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCC
T ss_pred -CCCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhc
Confidence 999999999999999999 9999999999999999999999999999999999999976 56778888887654
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-26 Score=185.02 Aligned_cols=139 Identities=31% Similarity=0.495 Sum_probs=128.2
Q ss_pred cCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEe
Q 047490 178 SGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257 (323)
Q Consensus 178 ~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t 257 (323)
.....|...|.+++... .++++||||++...++.+++.|...+..+..+||+|+..+|..+++.|++ |..+|||||
T Consensus 13 ~~~~~k~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~--g~~~vlvaT 88 (212)
T 3eaq_A 13 APVRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQ--GEVRVLVAT 88 (212)
T ss_dssp CCTTSHHHHHHHHHHHH--CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHS--SSCCEEEEC
T ss_pred CCHHHHHHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHC--CCCeEEEec
Confidence 34567999999988754 57899999999999999999999999999999999999999999999999 999999999
Q ss_pred cccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHh
Q 047490 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRK 320 (323)
Q Consensus 258 ~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~ 320 (323)
+++++|+|+ ++++||++++|++...|.||+||+||.|+.|.|+++++..+...++.+++.++.
T Consensus 89 ~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~ 152 (212)
T 3eaq_A 89 DVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGR 152 (212)
T ss_dssp TTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSS
T ss_pred ChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcC
Confidence 999999999 999999999999999999999999999999999999999999999999887764
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-25 Score=187.14 Aligned_cols=145 Identities=29% Similarity=0.478 Sum_probs=128.6
Q ss_pred eeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCC
Q 047490 171 RHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGD 250 (323)
Q Consensus 171 ~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~ 250 (323)
.+.++.+. ...|.+.|.+++... .++++||||++...++.+++.|...++.+..+||+|++.+|..+++.|++ |.
T Consensus 4 ~~~~i~~~-~~~K~~~L~~ll~~~--~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~--g~ 78 (300)
T 3i32_A 4 EEEAVPAP-VRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQ--GE 78 (300)
T ss_dssp EEEEEECC-SSSHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHH--TS
T ss_pred EEEEEECC-HHHHHHHHHHHHHhc--CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhc--CC
Confidence 34455444 567999999988764 47899999999999999999999999999999999999999999999999 99
Q ss_pred CCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHh
Q 047490 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRK 320 (323)
Q Consensus 251 ~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~ 320 (323)
.+|||||+++++|+|+ ++++||+++.|++...|.||+||+||.|+.|.|+++++..+...++.+++.++.
T Consensus 79 ~~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~ 149 (300)
T 3i32_A 79 VRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGR 149 (300)
T ss_dssp CCEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTC
T ss_pred ceEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCC
Confidence 9999999999999999 999999999999999999999999999999999999999999999999888765
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-27 Score=185.03 Aligned_cols=147 Identities=33% Similarity=0.556 Sum_probs=132.7
Q ss_pred ceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCC
Q 047490 170 ARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249 (323)
Q Consensus 170 ~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g 249 (323)
+.+.+..++....|...|.+++... .++++||||++...++.+++.|+..+..+..+||+|+..+|..+++.|++ |
T Consensus 4 i~~~~~~~~~~~~k~~~l~~ll~~~--~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~--g 79 (170)
T 2yjt_D 4 IHQWYYRADDLEHKTALLVHLLKQP--EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTE--G 79 (170)
Confidence 4455555554367888888888763 56799999999999999999999999999999999999999999999999 9
Q ss_pred CCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHh
Q 047490 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRK 320 (323)
Q Consensus 250 ~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~ 320 (323)
+.+|||||+++++|+|+ ++++||++++|+|...|.||+||+||.|+.|.++++++..+...++.+++.++.
T Consensus 80 ~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 151 (170)
T 2yjt_D 80 RVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEE 151 (170)
Confidence 99999999999999999 999999999999999999999999999999999999999999999888887654
|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.6e-25 Score=203.18 Aligned_cols=227 Identities=22% Similarity=0.275 Sum_probs=159.5
Q ss_pred eChHHHHHHHHcCCCCCCCCcEEeecchhhhhcCC--ChhhHH----HHHhh---hccccCC-C------CCCCceEEEE
Q 047490 73 GTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRG--FGPDIR----KFLVP---LKNRASK-P------NGQGFQTVLV 136 (323)
Q Consensus 73 ~Tp~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~--~~~~~~----~i~~~---~~~~~~~-~------~~~~~~~i~~ 136 (323)
+||++|++++... .++|+||+|++.+.. +..... ..... ++..... . .....|++++
T Consensus 320 ~tpg~LlDyl~~~-------~llVlDEa~~~l~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~~ 392 (661)
T 2d7d_A 320 STPYTLLDYFPDD-------FMIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHMHNIVYV 392 (661)
T ss_dssp CCCBCGGGGSCSS-------CEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSCCCCHHHHHHTCSEEEEE
T ss_pred CCccHHHHHcccC-------cEEEEecHHHHHHHHHHHHHHHHHHHHHHHHccccchhhhhcccccHHHHhccCCCEEEE
Confidence 7899888876432 389999999976320 000000 11000 0000000 0 0013489999
Q ss_pred EeecchhhHHHHHHHhcCceeeeccccccccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHH
Q 047490 137 SATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDH 216 (323)
Q Consensus 137 sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~ 216 (323)
|||+++..... ............ ........+.....+...++..+......+.++||||++...++.+++
T Consensus 393 SAT~~~~~~~~----~~~~~~~~~r~~-----~l~~p~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~ 463 (661)
T 2d7d_A 393 SATPGPYEIEH----TDEMVEQIIRPT-----GLLDPLIDVRPIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTD 463 (661)
T ss_dssp CSSCCHHHHHH----CSSCEEECCCTT-----CCCCCEEEEECSTTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHH
T ss_pred ecCCChhHHHh----hhCeeeeeeccc-----CCCCCeEEEecccchHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHH
Confidence 99997543221 111111111100 000111222333456666766666655567899999999999999999
Q ss_pred HHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCC-----CCCchhhhhhhccc
Q 047490 217 FLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDF-----PLNSIDYLHRTGRT 290 (323)
Q Consensus 217 ~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~-----p~s~~~~~Q~~GR~ 290 (323)
.|++.++.+..+||+++..+|..++++|+. |+.+|||||+.+++|+|+ ++++||+++. |.|...|.||+||+
T Consensus 464 ~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~--g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRa 541 (661)
T 2d7d_A 464 YLKEIGIKVNYLHSEIKTLERIEIIRDLRL--GKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRA 541 (661)
T ss_dssp HHHHTTCCEEEECTTCCHHHHHHHHHHHHH--TSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTT
T ss_pred HHHhcCCCeEEEeCCCCHHHHHHHHHHHhc--CCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcc
Confidence 999999999999999999999999999999 999999999999999999 9999999997 99999999999999
Q ss_pred ccCCCcceEEEEeeCCcHHHHHHHHHHH
Q 047490 291 ARMGAKGKVTSLVAKKDVLLADRIEEAI 318 (323)
Q Consensus 291 ~R~~~~g~~~~~~~~~~~~~~~~i~~~l 318 (323)
||. ..|.++++++..+....+.+++..
T Consensus 542 gR~-~~G~~i~~~~~~~~~~~~~i~~~~ 568 (661)
T 2d7d_A 542 ARN-AEGRVIMYADKITKSMEIAINETK 568 (661)
T ss_dssp TTS-TTCEEEEECSSCCHHHHHHHHHHH
T ss_pred cCC-CCCEEEEEEeCCCHHHHHHHHHHH
Confidence 998 789999999998887776666544
|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=9.1e-25 Score=202.32 Aligned_cols=136 Identities=24% Similarity=0.361 Sum_probs=122.0
Q ss_pred ChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc
Q 047490 180 SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL 259 (323)
Q Consensus 180 ~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~ 259 (323)
...+...++..+......+.++||||++...++.+++.|.+.++.+..+||+++..+|.++++.|+. |+.+|||||+.
T Consensus 421 ~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~--g~~~VLvaT~~ 498 (664)
T 1c4o_A 421 TENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRL--GHYDCLVGINL 498 (664)
T ss_dssp STTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHT--TSCSEEEESCC
T ss_pred ccchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhc--CCceEEEccCh
Confidence 3456666766666555567899999999999999999999999999999999999999999999999 99999999999
Q ss_pred cccccCC-CCCEEEEcCC-----CCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHH
Q 047490 260 AARGLDL-DVDHVIMFDF-----PLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAI 318 (323)
Q Consensus 260 ~~~Gid~-~~~~vi~~~~-----p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l 318 (323)
+++|+|+ ++++||+++. |.|...|.||+||+||.+ .|.++++++..+....+.+++..
T Consensus 499 l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~~~~~i~~~~ 562 (664)
T 1c4o_A 499 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEAMQRAIEETN 562 (664)
T ss_dssp CCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHHHHHHHHHHH
T ss_pred hhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHHHHHHHHHHH
Confidence 9999999 9999999997 889999999999999995 89999999998887777776654
|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.8e-25 Score=210.01 Aligned_cols=268 Identities=14% Similarity=0.172 Sum_probs=171.0
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc-CCCCCEEEeChHHHHHHHHcCC--CCCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL-NNPIDMVVGTPGRILQHIEDGN--MVYGDI 92 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~Iii~Tp~~l~~~~~~~~--~~~~~~ 92 (323)
...++|||+|+++|+.|+.+.++.+... .+.++.........+ ..+.+|+|+||++|...+.... ..++.+
T Consensus 329 ~~~rvLvlvpr~eL~~Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~ 402 (1038)
T 2w00_A 329 FIDKVFFVVDRKDLDYQTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQ 402 (1038)
T ss_dssp TCCEEEEEECGGGCCHHHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSC
T ss_pred CCceEEEEeCcHHHHHHHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccc
Confidence 3469999999999999999999998653 122333322222333 3457999999999998876532 235678
Q ss_pred cEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhH----HHHHHHhcCceeeeccc---ccc
Q 047490 93 KYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQ----KLVDEECQGIAHLRTST---LHK 165 (323)
Q Consensus 93 ~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~----~~~~~~~~~~~~~~~~~---~~~ 165 (323)
.+||+||||++.. +.....+...++. .+++++||||..... ......+..+.+..... ...
T Consensus 403 ~lvIiDEAHrs~~---~~~~~~I~~~~p~---------a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg 470 (1038)
T 2w00_A 403 VVFIFDECHRSQF---GEAQKNLKKKFKR---------YYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDE 470 (1038)
T ss_dssp EEEEEESCCTTHH---HHHHHHHHHHCSS---------EEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHT
T ss_pred cEEEEEccchhcc---hHHHHHHHHhCCc---------ccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCC
Confidence 9999999998754 2335555555543 389999999974321 11111111111100000 000
Q ss_pred ccccceeeEEe------------------------ccCChhHHHHHHHHhccCC----------CCCCeEEEEecCcccH
Q 047490 166 KIASARHDFIK------------------------LSGSENKLEALLQVLEPSL----------SKGNKVMVFCNTLNSS 211 (323)
Q Consensus 166 ~~~~~~~~~~~------------------------~~~~~~k~~~l~~~l~~~~----------~~~~~~lvf~~~~~~~ 211 (323)
....+...+.. .-..+.++..+.+.+..++ ..+.++||||+++..|
T Consensus 471 ~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A 550 (1038)
T 2w00_A 471 KVLKFKVDYNDVRPQFKSLETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAA 550 (1038)
T ss_dssp SSCCEEEEECCCCGGGHHHHTCCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHH
T ss_pred CcCCeEEEEEeccchhhhccccccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHH
Confidence 00000000000 0012233444443221111 1346899999999999
Q ss_pred HHHHHHHhhCC------------Cee-EEecCC----------C----------CHH-----------------------
Q 047490 212 RAVDHFLNENQ------------IST-VNYHGE----------V----------PAQ----------------------- 235 (323)
Q Consensus 212 ~~l~~~l~~~~------------~~~-~~~~~~----------~----------~~~----------------------- 235 (323)
..+++.|.+.+ ..+ .++||+ + ++.
T Consensus 551 ~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~ 630 (1038)
T 2w00_A 551 KAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTD 630 (1038)
T ss_dssp HHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSS
T ss_pred HHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhccccccc
Confidence 99999987643 344 345542 2 221
Q ss_pred ------HHHHHHHhccccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCc----ceEEEEee
Q 047490 236 ------ERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAK----GKVTSLVA 304 (323)
Q Consensus 236 ------~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~----g~~~~~~~ 304 (323)
.|..++++|++ |+++|||+|+.+.+|+|+ .+ +++++|.|.+...|.|++||++|.+.. |.++.+..
T Consensus 631 ~~~~~~~R~~i~~~Fk~--g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 631 SNGFQNYYRDLAQRVKN--QDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp HHHHHHHHHHHHHHHHT--TSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred chhhhHHHHHHHHHHHc--CCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 37788999999 999999999999999999 77 789999999999999999999998753 55665554
|
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-20 Score=172.49 Aligned_cols=283 Identities=13% Similarity=0.147 Sum_probs=197.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHH-HHHHHcCC------CCC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI-LQHIEDGN------MVY 89 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l-~~~~~~~~------~~~ 89 (323)
+..++|++||++||.|.++.+..++...++++..++|+...... ....+++|+|+||+.| ++++..+. ..+
T Consensus 120 G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r--~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~ 197 (997)
T 2ipc_A 120 GKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAER--RKAYLADVTYVTNSELGFDYLRDNMAISPDQLVL 197 (997)
T ss_dssp CSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHH--HHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHH--HHHcCCCEEEECchhhhhHHHHHhhhcchhhccc
Confidence 56899999999999999999999999999999999999764332 2233589999999999 78887653 456
Q ss_pred C---CCcEEeecchhhhh-cCCCh---------------hhHHHHHhhhccccC-----------CC--CC---------
Q 047490 90 G---DIKYLVLDEADTMF-DRGFG---------------PDIRKFLVPLKNRAS-----------KP--NG--------- 128 (323)
Q Consensus 90 ~---~~~~vIiDE~h~~~-~~~~~---------------~~~~~i~~~~~~~~~-----------~~--~~--------- 128 (323)
+ ++.++|+||+|.++ +.+.. ..+..++..+..... .. +.
T Consensus 198 r~d~~l~~lIIDEaDsmLiDeartPLIISgp~~~~~~lY~~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe 277 (997)
T 2ipc_A 198 RHDHPLHYAIIDEVDSILIDEARTPLIISGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTL 277 (997)
T ss_dssp CSSSSSCEEEETTHHHHTTSSTTSCEEEEESCSSCHHHHHHHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCH
T ss_pred ccCCCcceEEEechHHHHHhCCCCCeeeeCCCccchHHHHHHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEch
Confidence 7 89999999999986 22211 123344444432100 00 00
Q ss_pred ------------------CC------------------------------------------------------------
Q 047490 129 ------------------QG------------------------------------------------------------ 130 (323)
Q Consensus 129 ------------------~~------------------------------------------------------------ 130 (323)
.+
T Consensus 278 ~G~~~~E~~l~i~~Ly~~~n~~l~~~i~~ALrA~~lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv 357 (997)
T 2ipc_A 278 QGIAKAEKLLGIEGLFSPENMELAHMLIQAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGV 357 (997)
T ss_dssp HHHHHHHHHHSCHHHHTTTCHHHHHHHHHHHHHHHSSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCccccCchhHHHHHHHHHHHHHHHHHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCC
Confidence 00
Q ss_pred ---------------------ceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEEeccCChhHHHHHHH
Q 047490 131 ---------------------FQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQ 189 (323)
Q Consensus 131 ---------------------~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ 189 (323)
-++.+||+|...+..++.+-+......++. ..+.......-........|..++.+
T Consensus 358 ~I~~e~~TlAsIT~QnyFr~Y~kLsGMTGTA~tE~~Ef~~iY~l~Vv~IPT---n~p~~R~D~~d~vy~t~~~K~~AIv~ 434 (997)
T 2ipc_A 358 RIERENQTLATITYQNFFRLYEKRAGMTGTAKTEEKEFQEIYGMDVVVVPT---NRPVIRKDFPDVVYRTEKGKFYAVVE 434 (997)
T ss_dssp CCCCSCEEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHHCCCEEECCC---SSCCCCEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCCceeeeeeeHHHHHHhChHheecCCCchHHHHHHHHHhCCCEEEcCC---CCCcccccCCCeEEcCHHHHHHHHHH
Confidence 167888888876665554444333332222 11211122221223445778888888
Q ss_pred HhccCCCCCCeEEEEecCcccHHHHHHHHh--------------------------------------------------
Q 047490 190 VLEPSLSKGNKVMVFCNTLNSSRAVDHFLN-------------------------------------------------- 219 (323)
Q Consensus 190 ~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~-------------------------------------------------- 219 (323)
-+.+....+.|+||.|.|.+..+.+.+.|+
T Consensus 435 eI~~~~~~GqPVLVgT~SIe~SE~LS~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 514 (997)
T 2ipc_A 435 EIAEKYERGQPVLVGTISIEKSERLSQMLKEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFE 514 (997)
T ss_dssp HHHHHHHHTCCEEEECSSHHHHHHHHHHHHCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGG
T ss_pred HHHHHHHCCCCEEEEeCCHHHHHHHHHHHhhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhcccccccccccccc
Confidence 787766789999999999999999999998
Q ss_pred --------------------------hCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCCCCC----
Q 047490 220 --------------------------ENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLDVD---- 269 (323)
Q Consensus 220 --------------------------~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~~~~---- 269 (323)
..+++..+++......+-+-|.+.-+. |. |-|||+.+++|.|+.+.
T Consensus 515 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gI~H~VLNAK~he~EAeIIAqAG~~--Ga--VTIATNMAGRGTDIkLggn~e 590 (997)
T 2ipc_A 515 GLIPPKGNLRTAWEGLKRAVHTLAVLRQGIPHQVLNAKHHAREAEIVAQAGRS--KT--VTIATNMAGRGTDIKLGGNPE 590 (997)
T ss_dssp GGCCSSHHHHHHHHHHHHHHHHHHHHHHCCCCCEECSSSHHHHHHHHHTTTST--TC--EEEECSSTTTTSCCCSSCCHH
T ss_pred ccccccccccccccccchhhhhhHHHHcCCCeeeccccchHHHHHHHHhcCCC--Ce--EEEEecccCCCcCeecCCCHH
Confidence 345555556655443333333333333 54 89999999999998222
Q ss_pred -----------------------------------------------------------------------EEEEcCCCC
Q 047490 270 -----------------------------------------------------------------------HVIMFDFPL 278 (323)
Q Consensus 270 -----------------------------------------------------------------------~vi~~~~p~ 278 (323)
+||-...+.
T Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhE 670 (997)
T 2ipc_A 591 YLAAALLEKEGFDRYEWKVELFIKKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHE 670 (997)
T ss_dssp HHHHHTTSSSCSSTTHHHHHHHHHHHHHTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCS
T ss_pred HHHHHHHHhhcccccccccccccccccccchhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCc
Confidence 899999999
Q ss_pred CchhhhhhhcccccCCCcceEEEEeeCCcH
Q 047490 279 NSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308 (323)
Q Consensus 279 s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~ 308 (323)
|.+.-.|..||+||.|.+|.+..+++..|.
T Consensus 671 SrRIDnQLRGRaGRQGDPGsSrF~LSLeDd 700 (997)
T 2ipc_A 671 SRRIDNQLRGRAGRQGDPGGSRFYVSFDDD 700 (997)
T ss_dssp SHHHHHHHHHTSSCSSCCCEEEEEEESSSH
T ss_pred hHHHHHHHhcccccCCCCCCeEEEEECChH
Confidence 999999999999999999999999987764
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-21 Score=159.22 Aligned_cols=139 Identities=37% Similarity=0.584 Sum_probs=122.5
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcE
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKY 94 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~ 94 (323)
.+++++||++||++|+.|+.+.++++....++++..++|+.........+..+++|+|+||+++.+++......++++++
T Consensus 100 ~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~ 179 (242)
T 3fe2_A 100 GDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTY 179 (242)
T ss_dssp TCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCE
T ss_pred CCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccE
Confidence 46789999999999999999999999988889999999998777666666667899999999999999888888999999
Q ss_pred EeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecc
Q 047490 95 LVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTS 161 (323)
Q Consensus 95 vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~ 161 (323)
+|+||||++.+++|...+..++..+.. +.|++++|||+++........++.++..+...
T Consensus 180 lViDEah~l~~~~~~~~~~~i~~~~~~--------~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~ 238 (242)
T 3fe2_A 180 LVLDEADRMLDMGFEPQIRKIVDQIRP--------DRQTLMWSATWPKEVRQLAEDFLKDYIHINIG 238 (242)
T ss_dssp EEETTHHHHHHTTCHHHHHHHHTTSCS--------SCEEEEEESCCCHHHHHHHHHHCSSCEEEEEC
T ss_pred EEEeCHHHHhhhCcHHHHHHHHHhCCc--------cceEEEEEeecCHHHHHHHHHHCCCCEEEEec
Confidence 999999999999999999999887754 34999999999999999999998877665543
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.5e-20 Score=151.56 Aligned_cols=139 Identities=26% Similarity=0.424 Sum_probs=118.4
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHhcccc----ceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCC
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHA----RFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVY 89 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~ 89 (323)
..+++++||++||++|+.|+.+.++++.... ++.+..++|+.........+..+++|+|+||+++.+.+......+
T Consensus 69 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~ 148 (219)
T 1q0u_A 69 ERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDV 148 (219)
T ss_dssp TSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCG
T ss_pred CcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCc
Confidence 3457899999999999999999999998765 678888888877666556666678999999999999998877778
Q ss_pred CCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeec
Q 047490 90 GDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRT 160 (323)
Q Consensus 90 ~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~ 160 (323)
++++++|+||||++.++++...+..++..++. +.|++++|||+++.+.++...++..+..+..
T Consensus 149 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~--------~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~ 211 (219)
T 1q0u_A 149 HTAHILVVDEADLMLDMGFITDVDQIAARMPK--------DLQMLVFSATIPEKLKPFLKKYMENPTFVHV 211 (219)
T ss_dssp GGCCEEEECSHHHHHHTTCHHHHHHHHHTSCT--------TCEEEEEESCCCGGGHHHHHHHCSSCEEEEC
T ss_pred CcceEEEEcCchHHhhhChHHHHHHHHHhCCc--------ccEEEEEecCCCHHHHHHHHHHcCCCeEEEe
Confidence 89999999999999998898888888877753 3499999999999999999998887765543
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=155.69 Aligned_cols=144 Identities=33% Similarity=0.515 Sum_probs=120.6
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcE
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKY 94 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~ 94 (323)
..++++||++||++|+.|+.+.++++....++++..++|+.........+..+++|+|+||+++.+.+......++++++
T Consensus 98 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~ 177 (253)
T 1wrb_A 98 TAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKY 177 (253)
T ss_dssp CBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCE
T ss_pred cCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCE
Confidence 34579999999999999999999999887788999999988776666666777899999999999999888778899999
Q ss_pred EeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccc
Q 047490 95 LVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTST 162 (323)
Q Consensus 95 vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~ 162 (323)
+|+||||++.++++...+..++..+... ...+.|++++|||+++...+....++..+..+....
T Consensus 178 lViDEah~~~~~~~~~~~~~i~~~~~~~----~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~ 241 (253)
T 1wrb_A 178 IVLDEADRMLDMGFEPQIRKIIEESNMP----SGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGR 241 (253)
T ss_dssp EEEETHHHHHHTTCHHHHHHHHHSSCCC----CGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC-
T ss_pred EEEeCHHHHHhCchHHHHHHHHhhccCC----CCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECC
Confidence 9999999999999999999988754221 011348999999999999999988888776655443
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.5e-20 Score=147.97 Aligned_cols=137 Identities=31% Similarity=0.476 Sum_probs=116.5
Q ss_pred cCCCCccEEEEcCCHHHHHHHHHHHHHhcccc-ceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCC
Q 047490 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHA-RFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGD 91 (323)
Q Consensus 13 ~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~ 91 (323)
...+++++||++||++|+.|+.+.++++.... +.++..++|+.........+..+++|+|+||+++.+.+.+....+++
T Consensus 67 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 67 LKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp TTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred ccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 34567899999999999999999999998766 67888888887766555556677899999999999999887778899
Q ss_pred CcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCcee
Q 047490 92 IKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAH 157 (323)
Q Consensus 92 ~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~ 157 (323)
++++|+||+|++.+.++...+..++..++.. .+++++|||+++...+....++..+..
T Consensus 147 ~~~lViDEah~~~~~~~~~~l~~i~~~~~~~--------~~~l~~SAT~~~~~~~~~~~~l~~p~~ 204 (206)
T 1vec_A 147 VQMIVLDEADKLLSQDFVQIMEDIILTLPKN--------RQILLYSATFPLSVQKFMNSHLEKPYE 204 (206)
T ss_dssp CCEEEEETHHHHTSTTTHHHHHHHHHHSCTT--------CEEEEEESCCCHHHHHHHHHHCSSCEE
T ss_pred CCEEEEEChHHhHhhCcHHHHHHHHHhCCcc--------ceEEEEEeeCCHHHHHHHHHHcCCCeE
Confidence 9999999999999888988888888777532 399999999999999988888776543
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.6e-20 Score=151.08 Aligned_cols=134 Identities=32% Similarity=0.459 Sum_probs=111.6
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcE
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKY 94 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~ 94 (323)
.+++++||++||++|+.|+.+.++++. ..++++..++|+.........+..+++|+|+||+++.+++......++++++
T Consensus 92 ~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~ 170 (228)
T 3iuy_A 92 RNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITY 170 (228)
T ss_dssp -CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCE
T ss_pred cCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceE
Confidence 367899999999999999999999986 4478889999988877776666677899999999999998888888999999
Q ss_pred EeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCcee
Q 047490 95 LVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAH 157 (323)
Q Consensus 95 vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~ 157 (323)
+|+||||++.++++...+..++..+... .|++++|||+++........++..+..
T Consensus 171 lViDEah~~~~~~~~~~~~~i~~~~~~~--------~~~l~~SAT~~~~~~~~~~~~l~~p~~ 225 (228)
T 3iuy_A 171 LVIDEADKMLDMEFEPQIRKILLDVRPD--------RQTVMTSATWPDTVRQLALSYLKDPMI 225 (228)
T ss_dssp EEECCHHHHHHTTCHHHHHHHHHHSCSS--------CEEEEEESCCCHHHHHHHHTTCSSCEE
T ss_pred EEEECHHHHhccchHHHHHHHHHhCCcC--------CeEEEEEeeCCHHHHHHHHHHCCCCEE
Confidence 9999999999999999999998877543 499999999999999888887776544
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=4.3e-20 Score=150.61 Aligned_cols=137 Identities=31% Similarity=0.465 Sum_probs=108.8
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCC-CCEEEeChHHHHHHHHcCCCCCCCC
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNP-IDMVVGTPGRILQHIEDGNMVYGDI 92 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~Iii~Tp~~l~~~~~~~~~~~~~~ 92 (323)
..+++++||++||++|+.|+.+.++++....+..+..+.|+.........+..+ ++|+|+||+++.+.+.+....++++
T Consensus 95 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~ 174 (237)
T 3bor_A 95 EFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWI 174 (237)
T ss_dssp TSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTC
T ss_pred cCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccC
Confidence 346789999999999999999999999887788888888887766655555444 8999999999999998877778899
Q ss_pred cEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceee
Q 047490 93 KYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHL 158 (323)
Q Consensus 93 ~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~ 158 (323)
+++|+||||++.++++...+..++..+.. +.+++++|||+++...+....++..+..+
T Consensus 175 ~~lViDEah~~~~~~~~~~l~~i~~~~~~--------~~~~i~~SAT~~~~~~~~~~~~l~~p~~i 232 (237)
T 3bor_A 175 KMFVLDEADEMLSRGFKDQIYEIFQKLNT--------SIQVVLLSATMPTDVLEVTKKFMRDPIRI 232 (237)
T ss_dssp CEEEEESHHHHHHTTCHHHHHHHHHHSCT--------TCEEEEECSSCCHHHHHHHHHHCSSCEEE
T ss_pred cEEEECCchHhhccCcHHHHHHHHHhCCC--------CCeEEEEEEecCHHHHHHHHHHCCCCEEE
Confidence 99999999999998898888888877653 34999999999999999888888766544
|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.84 E-value=7.8e-21 Score=157.12 Aligned_cols=126 Identities=21% Similarity=0.373 Sum_probs=99.5
Q ss_pred CChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC-CCeeEEecCCCCHHHHHHHHHhccccCC-CCC-EEE
Q 047490 179 GSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN-QISTVNYHGEVPAQERVENLNKFKNEDG-DCP-TLV 255 (323)
Q Consensus 179 ~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~~g-~~~-ilv 255 (323)
....|...|.+++......+.++||||+....++.+...|... ++.+..+||+++..+|..++++|++ + ..+ +|+
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~--~~~~~v~L~ 170 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQN--NPSVKFIVL 170 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHH--CTTCCEEEE
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcC--CCCCCEEEE
Confidence 3567999999998877667889999999999999999999874 8999999999999999999999998 6 566 789
Q ss_pred EecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcce--EEEEeeCC
Q 047490 256 CTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGK--VTSLVAKK 306 (323)
Q Consensus 256 ~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~--~~~~~~~~ 306 (323)
+|.++++|+|+ .+++||+||+|||+..|.|++||++|.|+.+. ++.+++..
T Consensus 171 st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 171 SVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp ECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred ehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 99999999999 99999999999999999999999999997665 45566654
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
Probab=99.84 E-value=8.9e-20 Score=147.57 Aligned_cols=139 Identities=30% Similarity=0.498 Sum_probs=111.5
Q ss_pred cCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCC
Q 047490 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDI 92 (323)
Q Consensus 13 ~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~ 92 (323)
...+++++||++|+++|+.|+.+.++++....++++..++|+.........+.+ ++|+|+||+++.+.+.+....++++
T Consensus 78 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~ 156 (224)
T 1qde_A 78 TSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKI 156 (224)
T ss_dssp TTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred ccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhC
Confidence 345678999999999999999999999988888899999998776655555544 8999999999999998887788999
Q ss_pred cEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeec
Q 047490 93 KYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRT 160 (323)
Q Consensus 93 ~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~ 160 (323)
+++|+||||++.++++...+..++..+.. +.+++++|||+++........++..+..+..
T Consensus 157 ~~iViDEah~~~~~~~~~~l~~i~~~~~~--------~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~ 216 (224)
T 1qde_A 157 KMFILDEADEMLSSGFKEQIYQIFTLLPP--------TTQVVLLSATMPNDVLEVTTKFMRNPVRILV 216 (224)
T ss_dssp CEEEEETHHHHHHTTCHHHHHHHHHHSCT--------TCEEEEEESSCCHHHHHHHHHHCSSCEEEC-
T ss_pred cEEEEcChhHHhhhhhHHHHHHHHHhCCc--------cCeEEEEEeecCHHHHHHHHHHCCCCEEEEe
Confidence 99999999999998898888888877653 3399999999999999999888877665543
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.5e-20 Score=152.10 Aligned_cols=138 Identities=33% Similarity=0.477 Sum_probs=117.5
Q ss_pred cCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHc-CCCCCCC
Q 047490 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIED-GNMVYGD 91 (323)
Q Consensus 13 ~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~-~~~~~~~ 91 (323)
...+++++||++||++|+.|+.+.++++....++++..++|+.........+..+++|+|+||+++.+.+.+ ....+++
T Consensus 107 ~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 107 ETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp HSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred cCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 345578999999999999999999999988888899999998776555555566789999999999998876 4566889
Q ss_pred CcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceee
Q 047490 92 IKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHL 158 (323)
Q Consensus 92 ~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~ 158 (323)
++++|+||||++.++++...+..++..++.. .+++++|||+++...+....++..+..+
T Consensus 187 ~~~lViDEah~l~~~~~~~~l~~i~~~~~~~--------~~~l~~SAT~~~~v~~~~~~~l~~p~~i 245 (249)
T 3ber_A 187 LKYLVMDEADRILNMDFETEVDKILKVIPRD--------RKTFLFSATMTKKVQKLQRAALKNPVKC 245 (249)
T ss_dssp CCEEEECSHHHHHHTTCHHHHHHHHHSSCSS--------SEEEEEESSCCHHHHHHHHHHCSSCEEE
T ss_pred cCEEEEcChhhhhccChHHHHHHHHHhCCCC--------CeEEEEeccCCHHHHHHHHHHCCCCEEE
Confidence 9999999999999999999999988776532 3999999999999999888888776654
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=6.6e-20 Score=148.86 Aligned_cols=137 Identities=27% Similarity=0.423 Sum_probs=113.0
Q ss_pred cCCCCccEEEEcCCHHHHHHHHHHHHHhcccc-ceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCC
Q 047490 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHA-RFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGD 91 (323)
Q Consensus 13 ~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~ 91 (323)
...+++++||++||++|+.|+.+.++++.... ++++..++|+.........+ .+++|+|+||+++.+++......+++
T Consensus 88 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~ 166 (230)
T 2oxc_A 88 LENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGS 166 (230)
T ss_dssp TTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGG
T ss_pred hcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCccccc
Confidence 44567899999999999999999999997654 78888888887655444433 35899999999999998887777889
Q ss_pred CcEEeecchhhhhcCC-ChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceee
Q 047490 92 IKYLVLDEADTMFDRG-FGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHL 158 (323)
Q Consensus 92 ~~~vIiDE~h~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~ 158 (323)
++++|+||+|++.+++ +...+..++..++.. .|++++|||+++...+....++..+..+
T Consensus 167 ~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~--------~~~l~lSAT~~~~~~~~~~~~~~~p~~i 226 (230)
T 2oxc_A 167 IRLFILDEADKLLEEGSFQEQINWIYSSLPAS--------KQMLAVSATYPEFLANALTKYMRDPTFV 226 (230)
T ss_dssp CCEEEESSHHHHHSTTSSHHHHHHHHHHSCSS--------CEEEEEESCCCHHHHHHHTTTCSSCEEE
T ss_pred CCEEEeCCchHhhcCcchHHHHHHHHHhCCCC--------CeEEEEEeccCHHHHHHHHHHcCCCeEE
Confidence 9999999999999887 888888888877532 3899999999999888877776655443
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.1e-20 Score=151.83 Aligned_cols=131 Identities=34% Similarity=0.585 Sum_probs=113.4
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcC-CCCCCCCcE
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDG-NMVYGDIKY 94 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~-~~~~~~~~~ 94 (323)
+++++||++||++|+.|+.+.+++++...+..+..+.|+.........+..+++|+|+||+++...+... ...++++++
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~ 204 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQC 204 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCE
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCE
Confidence 4788999999999999999999999988888999999987766665555566899999999999888765 367889999
Q ss_pred EeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcC
Q 047490 95 LVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQG 154 (323)
Q Consensus 95 vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~ 154 (323)
+|+||||++.++++...+..++..+... .|++++|||+++....+....+..
T Consensus 205 lViDEah~l~~~~~~~~l~~i~~~~~~~--------~q~l~~SAT~~~~v~~~~~~~l~~ 256 (262)
T 3ly5_A 205 LVIDEADRILDVGFEEELKQIIKLLPTR--------RQTMLFSATQTRKVEDLARISLKK 256 (262)
T ss_dssp EEECSHHHHHHTTCHHHHHHHHHHSCSS--------SEEEEECSSCCHHHHHHHHHHCSS
T ss_pred EEEcChHHHhhhhHHHHHHHHHHhCCCC--------CeEEEEEecCCHHHHHHHHHHcCC
Confidence 9999999999999999999998887643 399999999999999888776654
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=99.82 E-value=9.8e-20 Score=145.47 Aligned_cols=134 Identities=34% Similarity=0.493 Sum_probs=113.4
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcE
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKY 94 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~ 94 (323)
.+++++||++|+++|+.|+.+.++++... +++..++|+.........+..+++|+|+||+++.+.+......++++++
T Consensus 70 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~ 147 (207)
T 2gxq_A 70 GRKPRALVLTPTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEV 147 (207)
T ss_dssp TCCCSEEEECSSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSE
T ss_pred CCCCcEEEEECCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceE
Confidence 46789999999999999999999999764 5788888887665555555566899999999999999887778899999
Q ss_pred EeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceee
Q 047490 95 LVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHL 158 (323)
Q Consensus 95 vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~ 158 (323)
+|+||+|++.+.++...+..++..+.. +.+++++|||+++...+....++..+..+
T Consensus 148 iViDEah~~~~~~~~~~~~~i~~~~~~--------~~~~i~~SAT~~~~~~~~~~~~~~~p~~i 203 (207)
T 2gxq_A 148 AVLDEADEMLSMGFEEEVEALLSATPP--------SRQTLLFSATLPSWAKRLAERYMKNPVLI 203 (207)
T ss_dssp EEEESHHHHHHTTCHHHHHHHHHTSCT--------TSEEEEECSSCCHHHHHHHHHHCSSCEEE
T ss_pred EEEEChhHhhccchHHHHHHHHHhCCc--------cCeEEEEEEecCHHHHHHHHHHcCCCeEE
Confidence 999999999998898888888776643 33999999999999998888887766544
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.5e-19 Score=149.33 Aligned_cols=138 Identities=25% Similarity=0.340 Sum_probs=112.3
Q ss_pred cccCCCCccEEEEcCCHHHHHHHHHHHHHhcccc-ceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHc-CCCC
Q 047490 11 VLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHA-RFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIED-GNMV 88 (323)
Q Consensus 11 ~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~-~~~~ 88 (323)
.....+++++|||+||++|+.|+.+.++.+.... ++.+....|+....... ..+++|+|+||+++.+++.+ ..+.
T Consensus 156 l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~ 232 (300)
T 3fmo_B 156 VEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFID 232 (300)
T ss_dssp CCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCC
T ss_pred hhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCC
Confidence 3345667899999999999999999999998654 57888888876543332 44579999999999999866 4566
Q ss_pred CCCCcEEeecchhhhhc-CCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeee
Q 047490 89 YGDIKYLVLDEADTMFD-RGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLR 159 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~ 159 (323)
+++++++|+||+|++.+ .++...+..++..+.. +.|++++|||+++.+..+...++..+..+.
T Consensus 233 l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~--------~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~ 296 (300)
T 3fmo_B 233 PKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPR--------NCQMLLFSATFEDSVWKFAQKVVPDPNVIK 296 (300)
T ss_dssp GGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCT--------TCEEEEEESCCCHHHHHHHHHHSSSCEEEE
T ss_pred hhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCC--------CCEEEEEeccCCHHHHHHHHHHCCCCeEEE
Confidence 88999999999999997 6788888888777654 349999999999999999999888776554
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.7e-19 Score=145.93 Aligned_cols=136 Identities=32% Similarity=0.548 Sum_probs=112.4
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcC-CCCCCCCc
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDG-NMVYGDIK 93 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~-~~~~~~~~ 93 (323)
.+++++||++||++|+.|+.+.++++....++++..++|+.........+ .+++|+|+||+++.+.+... ...+.+++
T Consensus 95 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~ 173 (236)
T 2pl3_A 95 TDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQ 173 (236)
T ss_dssp GGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCC
T ss_pred cCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCccccccc
Confidence 45789999999999999999999999888788999999987665544444 35899999999999888764 46678999
Q ss_pred EEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeee
Q 047490 94 YLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLR 159 (323)
Q Consensus 94 ~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~ 159 (323)
++|+||+|++.++++...+..++..++.. .+++++|||+++........++..+..+.
T Consensus 174 ~lViDEah~~~~~~~~~~~~~i~~~~~~~--------~~~l~~SAT~~~~~~~~~~~~~~~p~~i~ 231 (236)
T 2pl3_A 174 MLVLDEADRILDMGFADTMNAVIENLPKK--------RQTLLFSATQTKSVKDLARLSLKNPEYVW 231 (236)
T ss_dssp EEEETTHHHHHHTTTHHHHHHHHHTSCTT--------SEEEEEESSCCHHHHHHHHHSCSSCEEEE
T ss_pred EEEEeChHHHhcCCcHHHHHHHHHhCCCC--------CeEEEEEeeCCHHHHHHHHHhCCCCEEEE
Confidence 99999999999999999998888877543 38999999999999888887777665543
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.79 E-value=4.7e-19 Score=142.90 Aligned_cols=135 Identities=27% Similarity=0.415 Sum_probs=108.4
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhcccc-ceeEEEeecCccCCccccccC-CCCCEEEeChHHHHHHHHcCCCCCCCC
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHA-RFRSTMVSGGGRLRPQEDSLN-NPIDMVVGTPGRILQHIEDGNMVYGDI 92 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~Iii~Tp~~l~~~~~~~~~~~~~~ 92 (323)
.+++++||++||++|+.|+.+.++++.... ++++..++|+.........+. ..++|+|+||+++...+......++++
T Consensus 80 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 80 TGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp TTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred CCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 445799999999999999999999998765 688888888876554444333 346999999999999998877788999
Q ss_pred cEEeecchhhhhcC-CChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCcee
Q 047490 93 KYLVLDEADTMFDR-GFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAH 157 (323)
Q Consensus 93 ~~vIiDE~h~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~ 157 (323)
+++|+||||++.++ ++...+..++..+.. +.+++++|||+++...+....++.++..
T Consensus 160 ~~lViDEah~~~~~~~~~~~~~~i~~~~~~--------~~~~i~~SAT~~~~~~~~~~~~~~~p~~ 217 (220)
T 1t6n_A 160 KHFILDECDKMLEQLDMRRDVQEIFRMTPH--------EKQVMMFSATLSKEIRPVCRKFMQDPME 217 (220)
T ss_dssp CEEEEESHHHHHSSHHHHHHHHHHHHTSCS--------SSEEEEEESCCCTTTHHHHHTTCSSCEE
T ss_pred CEEEEcCHHHHhcccCcHHHHHHHHHhCCC--------cCeEEEEEeecCHHHHHHHHHHcCCCeE
Confidence 99999999999863 566666666655542 3499999999999998888887776554
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=1e-18 Score=143.30 Aligned_cols=140 Identities=22% Similarity=0.412 Sum_probs=111.5
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccc-cccCCCCCEEEeChHHHHHHHHcC--CCCCCC
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQE-DSLNNPIDMVVGTPGRILQHIEDG--NMVYGD 91 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Iii~Tp~~l~~~~~~~--~~~~~~ 91 (323)
.+++++||++||++|+.|+.+.++++....++++..++++....... .....+++|+|+||+++..++... ...+++
T Consensus 96 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 175 (245)
T 3dkp_A 96 NKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLAS 175 (245)
T ss_dssp SSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTT
T ss_pred cCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCccccc
Confidence 45779999999999999999999999988888888887765433322 233456899999999999998876 466889
Q ss_pred CcEEeecchhhhhcC---CChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeecc
Q 047490 92 IKYLVLDEADTMFDR---GFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTS 161 (323)
Q Consensus 92 ~~~vIiDE~h~~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~ 161 (323)
++++|+||||++.++ ++...+..++..+.. .+.+++++|||+++....+...++.++..+...
T Consensus 176 ~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~ 241 (245)
T 3dkp_A 176 VEWLVVDESDKLFEDGKTGFRDQLASIFLACTS-------HKVRRAMFSATFAYDVEQWCKLNLDNVISVSIG 241 (245)
T ss_dssp CCEEEESSHHHHHHHC--CHHHHHHHHHHHCCC-------TTCEEEEEESSCCHHHHHHHHHHSSSCEEEEEC
T ss_pred CcEEEEeChHHhcccccccHHHHHHHHHHhcCC-------CCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeC
Confidence 999999999999874 466666666554432 235999999999999999999998887766544
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=1e-14 Score=116.94 Aligned_cols=124 Identities=18% Similarity=0.216 Sum_probs=79.1
Q ss_pred CCCccEEEEcCCHHHHHH-HHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCC------C
Q 047490 15 PRRPRAVVLCPTRELSEQ-VFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGN------M 87 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~------~ 87 (323)
.+++++||++|+++|+.| +.+.++.+... ++++..++|+............+++|+|+||+.+...+.... .
T Consensus 80 ~~~~~~lil~p~~~L~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 158 (216)
T 3b6e_A 80 SEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGV 158 (216)
T ss_dssp TCCCCEEEEESSHHHHHHHHHHTHHHHHTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CC
T ss_pred cCCCcEEEEECHHHHHHHHHHHHHHHHhcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCccccccc
Confidence 346799999999999999 88888888754 678888888876655444444457999999999998887643 5
Q ss_pred CCCCCcEEeecchhhhhcCCChhhHH-HHHhhh-ccc----cCCCCCCCceEEEEEee
Q 047490 88 VYGDIKYLVLDEADTMFDRGFGPDIR-KFLVPL-KNR----ASKPNGQGFQTVLVSAT 139 (323)
Q Consensus 88 ~~~~~~~vIiDE~h~~~~~~~~~~~~-~i~~~~-~~~----~~~~~~~~~~~i~~sat 139 (323)
.+.++++||+||+|++...++...+. ..+... ... .......+.+++++|||
T Consensus 159 ~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 159 QLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp CGGGCSEEEETTC-------CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred chhcccEEEEECchhhccCCcHHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 57889999999999997655444332 222111 100 01111134599999998
|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.1e-14 Score=127.94 Aligned_cols=97 Identities=18% Similarity=0.237 Sum_probs=63.4
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEE--EecccccccCC-C----CC
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV--CTDLAARGLDL-D----VD 269 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv--~t~~~~~Gid~-~----~~ 269 (323)
.+++++||++|....+.+++.++.. . ...+|.. .++.+++++|++ +. .|++ +|..+.+|||+ + ++
T Consensus 383 ~~g~~lvff~S~~~~~~v~~~l~~~--~-~~~q~~~--~~~~~~l~~f~~--~~-~il~~V~~~~~~EGiD~~~~~~~~~ 454 (540)
T 2vl7_A 383 SSKSVLVFFPSYEMLESVRIHLSGI--P-VIEENKK--TRHEEVLELMKT--GK-YLVMLVMRAKESEGVEFREKENLFE 454 (540)
T ss_dssp CSSEEEEEESCHHHHHHHHTTCTTS--C-EEESTTT--CCHHHHHHHHHT--SC-CEEEEEC---------------CEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHhccC--c-eEecCCC--CcHHHHHHHHhc--CC-eEEEEEecCceecceecCCCccccc
Confidence 4679999999999999999988652 2 3445553 478899999987 54 5777 77999999999 6 88
Q ss_pred EEEEcCCCCCc------------------------------hhhhhhhcccccCCC-cceEEE
Q 047490 270 HVIMFDFPLNS------------------------------IDYLHRTGRTARMGA-KGKVTS 301 (323)
Q Consensus 270 ~vi~~~~p~s~------------------------------~~~~Q~~GR~~R~~~-~g~~~~ 301 (323)
+||+++.|... ....|.+||+-|... .|.+++
T Consensus 455 ~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~l 517 (540)
T 2vl7_A 455 SLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYL 517 (540)
T ss_dssp EEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEE
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEE
Confidence 99999988411 234699999999854 454443
|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-13 Score=114.56 Aligned_cols=111 Identities=15% Similarity=0.203 Sum_probs=84.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEe
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLV 96 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vI 96 (323)
..++||++|+++|+.|+.++++++.......+..++++..... ....+.+|+|+||+.+.+. ....++++++||
T Consensus 157 ~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vI 230 (282)
T 1rif_A 157 EGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMM 230 (282)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEE
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEE
Confidence 4489999999999999999999997766678888888765432 2234579999999977543 223467889999
Q ss_pred ecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhH
Q 047490 97 LDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQ 145 (323)
Q Consensus 97 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~ 145 (323)
+||||++.+ +.+..++..+... .+++++|||+++...
T Consensus 231 iDEaH~~~~----~~~~~il~~~~~~--------~~~l~lSATp~~~~~ 267 (282)
T 1rif_A 231 NDECHLATG----KSISSIISGLNNC--------MFKFGLSGSLRDGKA 267 (282)
T ss_dssp EETGGGCCH----HHHHHHTTTCTTC--------CEEEEECSSCCTTST
T ss_pred EECCccCCc----ccHHHHHHHhhcC--------CeEEEEeCCCCCcch
Confidence 999999853 4666666665332 399999999986543
|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
Probab=99.39 E-value=3.4e-11 Score=109.75 Aligned_cols=86 Identities=10% Similarity=0.106 Sum_probs=57.7
Q ss_pred HHHHHHhccCC-CCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEe--cccc
Q 047490 185 EALLQVLEPSL-SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT--DLAA 261 (323)
Q Consensus 185 ~~l~~~l~~~~-~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t--~~~~ 261 (323)
..+.+.+.... ..++.++||+++....+.+++. .+..+..=..+++ +.+.++.|+. ..-.||+++ ..+.
T Consensus 379 ~~l~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~--~~~~vl~~v~gg~~~ 450 (551)
T 3crv_A 379 KRYADYLLKIYFQAKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISA--NNKVLIGSVGKGKLA 450 (551)
T ss_dssp HHHHHHHHHHHHHCSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTS--SSSCEEEEESSCCSC
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHh--cCCeEEEEEecceec
Confidence 44444443322 2467999999999999888873 3333333223344 4567888864 223699998 6999
Q ss_pred cccCCC------CCEEEEcCCCC
Q 047490 262 RGLDLD------VDHVIMFDFPL 278 (323)
Q Consensus 262 ~Gid~~------~~~vi~~~~p~ 278 (323)
+|||++ +..||+.+.|.
T Consensus 451 EGiD~~d~~g~~l~~viI~~lPf 473 (551)
T 3crv_A 451 EGIELRNNDRSLISDVVIVGIPY 473 (551)
T ss_dssp CSSCCEETTEESEEEEEEESCCC
T ss_pred ccccccccCCcceeEEEEEcCCC
Confidence 999994 67899988763
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.5e-11 Score=99.80 Aligned_cols=111 Identities=18% Similarity=0.144 Sum_probs=75.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccc-cceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEE
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHH-ARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYL 95 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~v 95 (323)
+.++++++|+++++.|+.+.+...... .+..++... .........+++|+|+||+++.+.+.. .+++++++
T Consensus 109 ~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~-----~~~~~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~l 180 (235)
T 3llm_A 109 ECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSV-----RFESILPRPHASIMFCTVGVLLRKLEA---GIRGISHV 180 (235)
T ss_dssp GCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEE-----TTEEECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEE
T ss_pred ceEEEEeccchHHHHHHHHHHHHHhccccCceEEEee-----chhhccCCCCCeEEEECHHHHHHHHHh---hhcCCcEE
Confidence 568999999999999999988776542 222332211 111111124578999999999998876 38899999
Q ss_pred eecchhhh-hcCCCh-hhHHHHHhhhccccCCCCCCCceEEEEEeecchhh
Q 047490 96 VLDEADTM-FDRGFG-PDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAV 144 (323)
Q Consensus 96 IiDE~h~~-~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~ 144 (323)
|+||+|.+ .+.++. ..+..+....+ +.|++++|||++.+.
T Consensus 181 VlDEah~~~~~~~~~~~~l~~i~~~~~---------~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 181 IVDEIHERDINTDFLLVVLRDVVQAYP---------EVRIVLMSATIDTSM 222 (235)
T ss_dssp EECCTTSCCHHHHHHHHHHHHHHHHCT---------TSEEEEEECSSCCHH
T ss_pred EEECCccCCcchHHHHHHHHHHHhhCC---------CCeEEEEecCCCHHH
Confidence 99999974 433333 23344443322 349999999998765
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.22 E-value=4.2e-11 Score=97.04 Aligned_cols=99 Identities=15% Similarity=0.062 Sum_probs=72.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhcccccee-EEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEE
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFR-STMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYL 95 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~v 95 (323)
+.+++|++|+++|+.|+.+.++++ ++. +..+.|+... ..+|+|+||+.+...... ...++++|
T Consensus 133 ~~~~liv~P~~~L~~q~~~~~~~~----~~~~v~~~~g~~~~---------~~~i~v~T~~~l~~~~~~---~~~~~~ll 196 (237)
T 2fz4_A 133 STPTLIVVPTLALAEQWKERLGIF----GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK---LGNRFMLL 196 (237)
T ss_dssp CSCEEEEESSHHHHHHHHHHHGGG----CGGGEEEESSSCBC---------CCSEEEEEHHHHHHTHHH---HTTTCSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCCeEEEEeCCCCC---------cCCEEEEeHHHHHhhHHH---hcccCCEE
Confidence 568999999999999999999884 446 6667665431 358999999998766542 23468999
Q ss_pred eecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhh
Q 047490 96 VLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAV 144 (323)
Q Consensus 96 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~ 144 (323)
|+||+|++.+.. +..++..+.. .+++++||||.+..
T Consensus 197 IiDEaH~l~~~~----~~~i~~~~~~---------~~~l~LSATp~r~D 232 (237)
T 2fz4_A 197 IFDEVHHLPAES----YVQIAQMSIA---------PFRLGLTATFERED 232 (237)
T ss_dssp EEECSSCCCTTT----HHHHHHTCCC---------SEEEEEEESCC---
T ss_pred EEECCccCCChH----HHHHHHhccC---------CEEEEEecCCCCCC
Confidence 999999986543 3445444432 27999999997543
|
| >3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A | Back alignment and structure |
|---|
Probab=98.47 E-value=1.9e-06 Score=71.55 Aligned_cols=123 Identities=12% Similarity=0.164 Sum_probs=90.2
Q ss_pred ChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc
Q 047490 180 SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL 259 (323)
Q Consensus 180 ~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~ 259 (323)
...|+..|-+++....+.+.+++||++..+..+-+-..+...++....+.|.....+++ -.. +.+.+.+.|+.
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-----~~~--~~~~i~Lltsa 179 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-----AND--FSCTVHLFSSE 179 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------C--CSEEEEEEESS
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-----ccc--CCceEEEEECC
Confidence 45687777777766666889999999999999999999998899999999985533211 112 45556666777
Q ss_pred cccccC-----C-CCCEEEEcCCCCCchhh-hhhhcccccCC----CcceEEEEeeCCcHH
Q 047490 260 AARGLD-----L-DVDHVIMFDFPLNSIDY-LHRTGRTARMG----AKGKVTSLVAKKDVL 309 (323)
Q Consensus 260 ~~~Gid-----~-~~~~vi~~~~p~s~~~~-~Q~~GR~~R~~----~~g~~~~~~~~~~~~ 309 (323)
.+.|+| + .++.||.||..+++..- .|++-|+.|.| +.-.++-+++....+
T Consensus 180 g~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiE 240 (328)
T 3hgt_A 180 GINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSID 240 (328)
T ss_dssp CCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHH
T ss_pred CCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHH
Confidence 777775 7 89999999999999986 89998998873 345688888876554
|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=9.1e-06 Score=74.85 Aligned_cols=99 Identities=16% Similarity=0.281 Sum_probs=67.1
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEec--ccccccCC-C--CCEE
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD--LAARGLDL-D--VDHV 271 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~--~~~~Gid~-~--~~~v 271 (323)
.++.++||++|....+.+++.++..+ .. ...+++..++..++++|+ ++-.||+++. .+.+|||+ + +..|
T Consensus 447 ~~g~~lvlF~Sy~~l~~v~~~l~~~~--~~-~~q~~~~~~~~~ll~~f~---~~~~vL~~v~~gsf~EGiD~~g~~l~~v 520 (620)
T 4a15_A 447 VKKNTIVYFPSYSLMDRVENRVSFEH--MK-EYRGIDQKELYSMLKKFR---RDHGTIFAVSGGRLSEGINFPGNELEMI 520 (620)
T ss_dssp HCSCEEEEESCHHHHHHHTSSCCSCC--EE-CCTTCCSHHHHHHHHHHT---TSCCEEEEETTSCC--------CCCCEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhcc--hh-ccCCCChhHHHHHHHHhc---cCCcEEEEEecCceeccccCCCCceEEE
Confidence 45689999999999999988886222 22 445566678999999999 3445899984 89999999 4 8899
Q ss_pred EEcCCCCC-------------------c----------hhhhhhhcccccCCC-cceEEE
Q 047490 272 IMFDFPLN-------------------S----------IDYLHRTGRTARMGA-KGKVTS 301 (323)
Q Consensus 272 i~~~~p~s-------------------~----------~~~~Q~~GR~~R~~~-~g~~~~ 301 (323)
|+.+.|.. . ....|.+||+-|... .|.+++
T Consensus 521 iI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~l 580 (620)
T 4a15_A 521 ILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVI 580 (620)
T ss_dssp EESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEE
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEE
Confidence 99998741 1 112599999999754 444443
|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0017 Score=59.75 Aligned_cols=37 Identities=24% Similarity=0.384 Sum_probs=30.0
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeec
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSG 53 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~ 53 (323)
+++++|++||++++.|+.+.++.+....++++..+.|
T Consensus 51 ~~kvli~t~T~~l~~Qi~~el~~l~~~~~~~~~~l~g 87 (620)
T 4a15_A 51 KLKVLYLVRTNSQEEQVIKELRSLSSTMKIRAIPMQG 87 (620)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHHHHHHSCCCEEECCC
T ss_pred CCeEEEECCCHHHHHHHHHHHHHHhhccCeEEEEEEC
Confidence 5799999999999999999999987655556555444
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=96.18 E-value=0.012 Score=55.55 Aligned_cols=99 Identities=12% Similarity=0.076 Sum_probs=73.0
Q ss_pred EEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhh----CCCeeEEecCCCCHHHHHHHHHhccccCC
Q 047490 174 FIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE----NQISTVNYHGEVPAQERVENLNKFKNEDG 249 (323)
Q Consensus 174 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~g 249 (323)
....+.+..|.....-.+......+.++++.+|++..+...++.+++ .+..+..+||+++..++...++...+ |
T Consensus 393 Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~--g 470 (780)
T 1gm5_A 393 LLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRN--G 470 (780)
T ss_dssp EEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHS--S
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhc--C
Confidence 33344455565544333333334567999999999988888776654 37899999999999999999999998 9
Q ss_pred CCCEEEEecc-cccccCC-CCCEEEEc
Q 047490 250 DCPTLVCTDL-AARGLDL-DVDHVIMF 274 (323)
Q Consensus 250 ~~~ilv~t~~-~~~Gid~-~~~~vi~~ 274 (323)
..+|+|+|.. +...+++ ++..||.=
T Consensus 471 ~~~IvVgT~~ll~~~~~~~~l~lVVID 497 (780)
T 1gm5_A 471 QIDVVIGTHALIQEDVHFKNLGLVIID 497 (780)
T ss_dssp CCCEEEECTTHHHHCCCCSCCCEEEEE
T ss_pred CCCEEEECHHHHhhhhhccCCceEEec
Confidence 9999999975 3445677 78877763
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.03 Score=48.70 Aligned_cols=98 Identities=14% Similarity=0.117 Sum_probs=71.2
Q ss_pred EeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhh---CCCeeEEecCCCCHHHHHHHHHhccccCCCC
Q 047490 175 IKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE---NQISTVNYHGEVPAQERVENLNKFKNEDGDC 251 (323)
Q Consensus 175 ~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~ 251 (323)
...+.+..|....+-.+......+.+++|.+|++..+..+++.++. .+..+..++|+.+..++....+.+.. +..
T Consensus 41 v~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~--~~~ 118 (414)
T 3oiy_A 41 MVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEE--DDY 118 (414)
T ss_dssp CCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHH--TCC
T ss_pred EEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhc--CCC
Confidence 3344456666533333222224678999999999999999999888 57799999999999888888888887 878
Q ss_pred CEEEEecccc----cccCC-CCCEEEEc
Q 047490 252 PTLVCTDLAA----RGLDL-DVDHVIMF 274 (323)
Q Consensus 252 ~ilv~t~~~~----~Gid~-~~~~vi~~ 274 (323)
+|+|+|+-.- .-++. +++.||.=
T Consensus 119 ~Iiv~Tp~~l~~~l~~~~~~~~~~iViD 146 (414)
T 3oiy_A 119 HILVFSTQFVSKNREKLSQKRFDFVFVD 146 (414)
T ss_dssp SEEEEEHHHHHHCHHHHTTCCCSEEEES
T ss_pred CEEEECHHHHHHHHHHhccccccEEEEe
Confidence 9999996321 12455 67776653
|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.052 Score=49.86 Aligned_cols=105 Identities=14% Similarity=0.220 Sum_probs=53.2
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcE
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKY 94 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~ 94 (323)
.++.++++++||...+.++.+.+.......++..... .. .......+. .++-.+|+.. . +.........+++
T Consensus 194 ~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~~~~-~~--~~~~~~Tih---~ll~~~~~~~-~-~~~~~~~~l~~d~ 265 (608)
T 1w36_D 194 GERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQK-KR--IPEDASTLH---RLLGAQPGSQ-R-LRHHAGNPLHLDV 265 (608)
T ss_dssp SCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCSCCC-CS--CSCCCBTTT---SCC-------------CTTSCCSCSE
T ss_pred cCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCHHHH-hc--cchhhhhhH---hhhccCCCch-H-HHhccCCCCCCCE
Confidence 4567999999999999999888877654433221000 00 000000000 1222233221 1 1111112237899
Q ss_pred EeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEee
Q 047490 95 LVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSAT 139 (323)
Q Consensus 95 vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat 139 (323)
+|+||++.+ + .+.+..++..++.. .++++++-.
T Consensus 266 lIIDEAsml-~---~~~~~~Ll~~l~~~--------~~liLvGD~ 298 (608)
T 1w36_D 266 LVVDEASMI-D---LPMMSRLIDALPDH--------ARVIFLGDR 298 (608)
T ss_dssp EEECSGGGC-B---HHHHHHHHHTCCTT--------CEEEEEECT
T ss_pred EEEechhhC-C---HHHHHHHHHhCCCC--------CEEEEEcch
Confidence 999999944 3 34556666655432 277777654
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.045 Score=40.77 Aligned_cols=80 Identities=16% Similarity=0.255 Sum_probs=56.8
Q ss_pred cccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCC
Q 047490 11 VLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGN 86 (323)
Q Consensus 11 ~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~ 86 (323)
.+...++.++||.++++.-+..+++.+++. ++.+..++|+.....+...+ .+..+|+|+|. .+ ...
T Consensus 29 ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~G 98 (163)
T 2hjv_A 29 VLMTENPDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VA-ARG 98 (163)
T ss_dssp HHHHHCCSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GG-TTT
T ss_pred HHHhcCCCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hh-hcC
Confidence 333445678999999999999999988875 56888899887654443322 34578999992 22 345
Q ss_pred CCCCCCcEEeecch
Q 047490 87 MVYGDIKYLVLDEA 100 (323)
Q Consensus 87 ~~~~~~~~vIiDE~ 100 (323)
+.+.++++||.-+.
T Consensus 99 ld~~~~~~Vi~~~~ 112 (163)
T 2hjv_A 99 IDIENISLVINYDL 112 (163)
T ss_dssp CCCSCCSEEEESSC
T ss_pred CchhcCCEEEEeCC
Confidence 66778888886443
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.053 Score=40.91 Aligned_cols=81 Identities=11% Similarity=0.133 Sum_probs=57.9
Q ss_pred hhhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHH
Q 047490 7 AMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHI 82 (323)
Q Consensus 7 ~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~ 82 (323)
++...+...++.++||.|+++..+..+++.+++. +..+..++|+.....+...+ .+..+|+|+|. .
T Consensus 24 ~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~- 93 (175)
T 2rb4_A 24 ALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----V- 93 (175)
T ss_dssp HHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----S-
T ss_pred HHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----c-
Confidence 3444455556779999999999999998888775 56888899887655443332 35678999993 2
Q ss_pred HcCCCCCCCCcEEee
Q 047490 83 EDGNMVYGDIKYLVL 97 (323)
Q Consensus 83 ~~~~~~~~~~~~vIi 97 (323)
-...+.+..+++||.
T Consensus 94 ~~~Gid~~~~~~Vi~ 108 (175)
T 2rb4_A 94 CARGIDVKQVTIVVN 108 (175)
T ss_dssp CCTTTCCTTEEEEEE
T ss_pred hhcCCCcccCCEEEE
Confidence 233566778888885
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=94.76 E-value=0.076 Score=52.28 Aligned_cols=100 Identities=15% Similarity=0.131 Sum_probs=74.2
Q ss_pred EEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhh---CCCeeEEecCCCCHHHHHHHHHhccccCCC
Q 047490 174 FIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE---NQISTVNYHGEVPAQERVENLNKFKNEDGD 250 (323)
Q Consensus 174 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~---~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~ 250 (323)
....+.+..|....+-.+......+.++||.+|++..+..+++.++. .+..+..+||+++..++...++.+.. |.
T Consensus 97 lv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~--g~ 174 (1104)
T 4ddu_A 97 TMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEE--DD 174 (1104)
T ss_dssp EECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHT--SC
T ss_pred EEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhC--CC
Confidence 34445566676654444333335678999999999999999999988 46789999999999888888899988 88
Q ss_pred CCEEEEecccc-c---ccCC-CCCEEEEcC
Q 047490 251 CPTLVCTDLAA-R---GLDL-DVDHVIMFD 275 (323)
Q Consensus 251 ~~ilv~t~~~~-~---Gid~-~~~~vi~~~ 275 (323)
.+|+|+|+-.- . -+++ +++++|+=.
T Consensus 175 ~~IlV~Tp~rL~~~l~~l~~~~l~~lViDE 204 (1104)
T 4ddu_A 175 YHILVFSTQFVSKNREKLSQKRFDFVFVDD 204 (1104)
T ss_dssp CSEEEEEHHHHHHSHHHHHTSCCSEEEESC
T ss_pred CCEEEECHHHHHHHHHhhcccCcCEEEEeC
Confidence 89999996321 1 2446 777777633
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=94.67 E-value=0.066 Score=39.94 Aligned_cols=81 Identities=10% Similarity=0.165 Sum_probs=56.8
Q ss_pred ccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcC
Q 047490 10 GVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDG 85 (323)
Q Consensus 10 ~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~ 85 (323)
..+...++.++||.++++.-+..+++.+++. +..+..++|+.....+...+ .+...|+|+|. . -..
T Consensus 23 ~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~ 92 (165)
T 1fuk_A 23 DLYDSISVTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----L-LAR 92 (165)
T ss_dssp HHHHHTTCSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----G-GTT
T ss_pred HHHHhCCCCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----h-hhc
Confidence 3344445679999999999999999888775 56788899887654443322 35578999993 2 234
Q ss_pred CCCCCCCcEEeecch
Q 047490 86 NMVYGDIKYLVLDEA 100 (323)
Q Consensus 86 ~~~~~~~~~vIiDE~ 100 (323)
.+.+.++++||.-+.
T Consensus 93 G~d~~~~~~Vi~~~~ 107 (165)
T 1fuk_A 93 GIDVQQVSLVINYDL 107 (165)
T ss_dssp TCCCCSCSEEEESSC
T ss_pred CCCcccCCEEEEeCC
Confidence 566778888876443
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=94.01 E-value=0.081 Score=41.36 Aligned_cols=80 Identities=15% Similarity=0.190 Sum_probs=57.2
Q ss_pred hhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHH
Q 047490 8 MLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIE 83 (323)
Q Consensus 8 ~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~ 83 (323)
+...+...++.++||.++++.-+..+.+.++.. +..+..++|+.....+...+ .+..+|+|+|. . -
T Consensus 22 l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~-~ 91 (212)
T 3eaq_A 22 LSDLLYVASPDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----V-A 91 (212)
T ss_dssp HHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----T-T
T ss_pred HHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----h-h
Confidence 333344445679999999999999999888775 56888899987655543332 35578999992 2 2
Q ss_pred cCCCCCCCCcEEee
Q 047490 84 DGNMVYGDIKYLVL 97 (323)
Q Consensus 84 ~~~~~~~~~~~vIi 97 (323)
...+.+.++++||.
T Consensus 92 ~~Gidi~~v~~Vi~ 105 (212)
T 3eaq_A 92 ARGLDIPQVDLVVH 105 (212)
T ss_dssp TCSSSCCCBSEEEE
T ss_pred hcCCCCccCcEEEE
Confidence 34567788888884
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=93.83 E-value=0.078 Score=39.88 Aligned_cols=82 Identities=9% Similarity=0.028 Sum_probs=57.0
Q ss_pred hccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHc
Q 047490 9 LGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIED 84 (323)
Q Consensus 9 ~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~ 84 (323)
...+...++.++||.|+++.-+..+++.++.. ++.+..++|+.....+...+ .+...|+|+|. . -.
T Consensus 23 ~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~-~~ 92 (172)
T 1t5i_A 23 FDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----L-FG 92 (172)
T ss_dssp HHHHHHSCCSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-----C-CS
T ss_pred HHHHHhCCCCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECC-----c-hh
Confidence 33344445679999999999999999988875 56788888886654433322 35678999993 1 22
Q ss_pred CCCCCCCCcEEeecch
Q 047490 85 GNMVYGDIKYLVLDEA 100 (323)
Q Consensus 85 ~~~~~~~~~~vIiDE~ 100 (323)
..+.+.++++||.-+.
T Consensus 93 ~Gldi~~~~~Vi~~d~ 108 (172)
T 1t5i_A 93 RGMDIERVNIAFNYDM 108 (172)
T ss_dssp TTCCGGGCSEEEESSC
T ss_pred cCcchhhCCEEEEECC
Confidence 3566777888876443
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=93.65 E-value=0.18 Score=49.96 Aligned_cols=98 Identities=14% Similarity=0.117 Sum_probs=70.4
Q ss_pred EEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhh----CCCeeEEecCCCCHHHHHHHHHhccccCC
Q 047490 174 FIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE----NQISTVNYHGEVPAQERVENLNKFKNEDG 249 (323)
Q Consensus 174 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~g 249 (323)
....+.+..|....+.........+.+++|.+|++..+...++.+++ .+..+..+++..+..++..+++.... |
T Consensus 628 ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~--g 705 (1151)
T 2eyq_A 628 LVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAE--G 705 (1151)
T ss_dssp EEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHT--T
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhc--C
Confidence 44444456666443322211223567999999999988888777654 36788899999999999999999988 9
Q ss_pred CCCEEEEec-ccccccCC-CCCEEEE
Q 047490 250 DCPTLVCTD-LAARGLDL-DVDHVIM 273 (323)
Q Consensus 250 ~~~ilv~t~-~~~~Gid~-~~~~vi~ 273 (323)
..+|+|+|. .+...+.+ ++..||.
T Consensus 706 ~~dIvV~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 706 KIDILIGTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp CCSEEEECTHHHHSCCCCSSEEEEEE
T ss_pred CCCEEEECHHHHhCCccccccceEEE
Confidence 999999995 44445677 7776665
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.35 E-value=0.26 Score=37.75 Aligned_cols=73 Identities=10% Similarity=0.210 Sum_probs=53.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCCCCCC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMVYGDI 92 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~~~~~ 92 (323)
++++||.++++.-+..+.+.++.. ++.+..++|+....++...+ .+..+|+|+| +.+. ..+.+.++
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-----~~~~-~Gldi~~v 123 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-----DVAS-KGLDFPAI 123 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-----HHHH-TTCCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-----Cchh-cCCCcccC
Confidence 458999999999999999988775 56888899987654443332 3457899999 3333 35667888
Q ss_pred cEEeecc
Q 047490 93 KYLVLDE 99 (323)
Q Consensus 93 ~~vIiDE 99 (323)
++||.=+
T Consensus 124 ~~VI~~d 130 (191)
T 2p6n_A 124 QHVINYD 130 (191)
T ss_dssp SEEEESS
T ss_pred CEEEEeC
Confidence 8887633
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.88 E-value=0.16 Score=38.73 Aligned_cols=74 Identities=14% Similarity=0.206 Sum_probs=46.3
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMVYGD 91 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~~~~ 91 (323)
++.++||.++++.-+..+++.++.. ++.+..++|+.....+...+ .+..+|+|+|. .+ ...+.+.+
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~-~~Gldi~~ 114 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VA-ARGLDISN 114 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------------CCCS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-----hh-hcCCCccc
Confidence 5678999999999999999888775 56888899887655544332 34578999993 22 23456778
Q ss_pred CcEEeecc
Q 047490 92 IKYLVLDE 99 (323)
Q Consensus 92 ~~~vIiDE 99 (323)
+++||.=+
T Consensus 115 ~~~VI~~d 122 (185)
T 2jgn_A 115 VKHVINFD 122 (185)
T ss_dssp BSEEEESS
T ss_pred CCEEEEeC
Confidence 88887633
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=91.26 E-value=0.23 Score=41.07 Aligned_cols=82 Identities=13% Similarity=0.175 Sum_probs=57.8
Q ss_pred hhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHH
Q 047490 8 MLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIE 83 (323)
Q Consensus 8 ~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~ 83 (323)
+...+....+.++||.|+++.-+..+.+.+... ++.+..++|+.....+...+ .+..+|+|+|. . -
T Consensus 19 L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----v-a 88 (300)
T 3i32_A 19 LSDLLYVASPDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----V-A 88 (300)
T ss_dssp HHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----T-T
T ss_pred HHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----h-h
Confidence 333333344779999999999999888888764 66888999987765544333 34578999992 2 2
Q ss_pred cCCCCCCCCcEEeecc
Q 047490 84 DGNMVYGDIKYLVLDE 99 (323)
Q Consensus 84 ~~~~~~~~~~~vIiDE 99 (323)
...+.+.++++||.=+
T Consensus 89 ~~Gidi~~v~~VI~~d 104 (300)
T 3i32_A 89 ARGLDIPQVDLVVHYR 104 (300)
T ss_dssp TCSTTCCCCSEEEESS
T ss_pred hcCccccceeEEEEcC
Confidence 3456788898888533
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=89.82 E-value=0.052 Score=40.77 Aligned_cols=82 Identities=12% Similarity=0.227 Sum_probs=54.6
Q ss_pred hhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHH
Q 047490 8 MLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIE 83 (323)
Q Consensus 8 ~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~ 83 (323)
+...+...++.++||.++++.-+..+++.++.. ++.+..++|+.....+...+ .+..+|+|+|. .+.
T Consensus 21 l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~ 91 (170)
T 2yjt_D 21 LVHLLKQPEATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-----VAA 91 (170)
Confidence 334444556678999999999998888887765 56788888886655444333 23567999992 222
Q ss_pred cCCCCCCCCcEEeecc
Q 047490 84 DGNMVYGDIKYLVLDE 99 (323)
Q Consensus 84 ~~~~~~~~~~~vIiDE 99 (323)
..+.+.++++||.-+
T Consensus 92 -~Gid~~~~~~Vi~~~ 106 (170)
T 2yjt_D 92 -RGIDIPDVSHVFNFD 106 (170)
Confidence 245566677776533
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=90.13 E-value=0.6 Score=41.96 Aligned_cols=59 Identities=10% Similarity=0.151 Sum_probs=54.0
Q ss_pred CCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEec
Q 047490 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258 (323)
Q Consensus 198 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~ 258 (323)
++++||.+|++..+....+.|+..+..+..++|+.+..++..+...... +..+|+++|+
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~--~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRT--GQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHH--TCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhc--CCCCEEEECH
Confidence 4689999999999999999999999999999999999998888888888 8899999996
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=89.98 E-value=0.59 Score=42.70 Aligned_cols=61 Identities=11% Similarity=0.092 Sum_probs=53.5
Q ss_pred CCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEec
Q 047490 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258 (323)
Q Consensus 198 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~ 258 (323)
++++||.+|++..++...+.|+..+..+..++|+++..++..++.......+..+|+++|+
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 4699999999999999999999889999999999999999888888843237889999997
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=89.52 E-value=0.99 Score=39.54 Aligned_cols=69 Identities=6% Similarity=0.011 Sum_probs=46.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEe
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLV 96 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vI 96 (323)
+.++||.||+++-+.++++.+++. +.++..++|+...........+..+|+|+|. .+ ...+.+. +++||
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~-----v~-e~GiDip-v~~VI 245 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFEREYPTIKQKKPDFILATD-----IA-EMGANLC-VERVL 245 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC--------CCCSEEEESS-----ST-TCCTTCC-CSEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHHHHHhhhcCCCceEEEECC-----hh-heeeccC-ceEEE
Confidence 568999999999999999998886 5688888884322222222245579999993 22 3356677 88877
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=88.92 E-value=2.5 Score=32.72 Aligned_cols=96 Identities=16% Similarity=0.219 Sum_probs=60.9
Q ss_pred EEeccCChhHHHHHH-HHhccCC--CCCCeEEEEecCcccHHHHHHHHhhC-----CCeeEEecCCCCHHHHHHHHHhcc
Q 047490 174 FIKLSGSENKLEALL-QVLEPSL--SKGNKVMVFCNTLNSSRAVDHFLNEN-----QISTVNYHGEVPAQERVENLNKFK 245 (323)
Q Consensus 174 ~~~~~~~~~k~~~l~-~~l~~~~--~~~~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~ 245 (323)
....+.+..|..... -++.... ..+.+++|.++++..+..+++.++.. +..+..++|+.+....... +.
T Consensus 55 li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~---~~ 131 (220)
T 1t6n_A 55 LCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV---LK 131 (220)
T ss_dssp EEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHH---HH
T ss_pred EEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHH---Hh
Confidence 344455566654333 2222211 12348999999999999888777654 6788899999886655433 33
Q ss_pred ccCCCCCEEEEecc-c-----ccccCC-CCCEEEEc
Q 047490 246 NEDGDCPTLVCTDL-A-----ARGLDL-DVDHVIMF 274 (323)
Q Consensus 246 ~~~g~~~ilv~t~~-~-----~~Gid~-~~~~vi~~ 274 (323)
+ +..+|+|+|+- + ...+++ +++.+|.=
T Consensus 132 ~--~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViD 165 (220)
T 1t6n_A 132 K--NCPHIVVGTPGRILALARNKSLNLKHIKHFILD 165 (220)
T ss_dssp H--SCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred c--CCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEc
Confidence 4 55679999962 1 123566 77777763
|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
Probab=88.56 E-value=2.4 Score=39.33 Aligned_cols=78 Identities=17% Similarity=0.216 Sum_probs=57.5
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMVYGD 91 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~~~~ 91 (323)
++.++||.++|+..+..+.+.++.. ++++..++|+.....+...+ .+..+|+|+|- . -...+.+.+
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~-l~~GlDip~ 513 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----L-LREGLDIPE 513 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----C-CSTTCCCTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----h-hhCCcccCC
Confidence 4569999999999999998888876 56778888776544433322 24578999993 2 234677888
Q ss_pred CcEEeecchhhh
Q 047490 92 IKYLVLDEADTM 103 (323)
Q Consensus 92 ~~~vIiDE~h~~ 103 (323)
+++||+-|++..
T Consensus 514 v~lVi~~d~d~~ 525 (661)
T 2d7d_A 514 VSLVAILDADKE 525 (661)
T ss_dssp EEEEEETTTTCC
T ss_pred CCEEEEeCcccc
Confidence 999999888743
|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
Probab=87.88 E-value=3.5 Score=38.21 Aligned_cols=77 Identities=16% Similarity=0.145 Sum_probs=56.3
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccc---c-CCCCCEEEeChHHHHHHHHcCCCCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS---L-NNPIDMVVGTPGRILQHIEDGNMVYGD 91 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~Iii~Tp~~l~~~~~~~~~~~~~ 91 (323)
++.++||.++|+..+..+.+.+++. ++++..++|+.....+... + .+..+|+|+|- . -...+.+.+
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~-l~~GlDip~ 507 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----L-LREGLDIPE 507 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----C-CCTTCCCTT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----h-hhcCccCCC
Confidence 3569999999999999998888876 5677788877654443332 2 34578999992 2 234677888
Q ss_pred CcEEeecchhh
Q 047490 92 IKYLVLDEADT 102 (323)
Q Consensus 92 ~~~vIiDE~h~ 102 (323)
+++||+=|++.
T Consensus 508 v~lVI~~d~d~ 518 (664)
T 1c4o_A 508 VSLVAILDADK 518 (664)
T ss_dssp EEEEEETTTTS
T ss_pred CCEEEEeCCcc
Confidence 99998888764
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=87.86 E-value=1.1 Score=38.14 Aligned_cols=79 Identities=8% Similarity=0.093 Sum_probs=57.7
Q ss_pred cCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCC
Q 047490 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMV 88 (323)
Q Consensus 13 ~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~ 88 (323)
...++.++||.++++.-+..+++.++.. +..+..++|+.....+...+ .+..+|+|+|. . -...+.
T Consensus 239 ~~~~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~Gid 308 (395)
T 3pey_A 239 GLMTIGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----V-LARGID 308 (395)
T ss_dssp TTTTSSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----G-GSSSCC
T ss_pred HhccCCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----h-hhcCCC
Confidence 3445679999999999999999988876 55788888887655443332 34578999993 2 334677
Q ss_pred CCCCcEEeecchh
Q 047490 89 YGDIKYLVLDEAD 101 (323)
Q Consensus 89 ~~~~~~vIiDE~h 101 (323)
+.++++||.-+..
T Consensus 309 ip~~~~Vi~~~~p 321 (395)
T 3pey_A 309 IPTVSMVVNYDLP 321 (395)
T ss_dssp CTTEEEEEESSCC
T ss_pred cccCCEEEEcCCC
Confidence 8889999875554
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=87.73 E-value=0.57 Score=40.30 Aligned_cols=74 Identities=11% Similarity=0.117 Sum_probs=54.9
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCCCC
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMVYG 90 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~~~ 90 (323)
.++.++||.++++.-+..+++.+++. +..+..++|+.....+...+ .+..+|+|+|. . -...+.+.
T Consensus 264 ~~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~Gidip 333 (412)
T 3fht_A 264 ITIAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----V-CARGIDVE 333 (412)
T ss_dssp HSSSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----G-GTSSCCCT
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----c-cccCCCcc
Confidence 34568999999999999999988876 55788888887655543332 35578999993 2 33467788
Q ss_pred CCcEEeec
Q 047490 91 DIKYLVLD 98 (323)
Q Consensus 91 ~~~~vIiD 98 (323)
++++||.-
T Consensus 334 ~~~~Vi~~ 341 (412)
T 3fht_A 334 QVSVVINF 341 (412)
T ss_dssp TEEEEEES
T ss_pred CCCEEEEE
Confidence 89988853
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=87.64 E-value=1.1 Score=40.66 Aligned_cols=79 Identities=10% Similarity=0.122 Sum_probs=58.6
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCCCC
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMVYG 90 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~~~ 90 (323)
.++.++||.|+++.-+..+++.+++... .+..+..++|+.....+...+ .+..+|+|+|. . -...+.+.
T Consensus 337 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~-~~~GiDip 409 (563)
T 3i5x_A 337 DSNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----V-GARGMDFP 409 (563)
T ss_dssp TTCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----G-GTSSCCCT
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----h-hhcCCCcc
Confidence 5577999999999999999999988754 256888889887655443332 35578999993 2 33467788
Q ss_pred CCcEEeecch
Q 047490 91 DIKYLVLDEA 100 (323)
Q Consensus 91 ~~~~vIiDE~ 100 (323)
++++||.-..
T Consensus 410 ~v~~VI~~~~ 419 (563)
T 3i5x_A 410 NVHEVLQIGV 419 (563)
T ss_dssp TCCEEEEESC
T ss_pred cCCEEEEECC
Confidence 8999886554
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=87.55 E-value=0.68 Score=39.51 Aligned_cols=79 Identities=9% Similarity=0.013 Sum_probs=56.4
Q ss_pred ccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCC
Q 047490 12 LMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNM 87 (323)
Q Consensus 12 ~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~ 87 (323)
+...++.++||.++++.-+..+++.++.. +..+..++|+.....+...+ .+...|+|+|. . -...+
T Consensus 245 l~~~~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~-~~~Gi 314 (391)
T 1xti_A 245 LDVLEFNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----L-FGRGM 314 (391)
T ss_dssp HHHSCCSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC-----C-CSSCB
T ss_pred HHhcCCCcEEEEeCcHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC-----h-hhcCC
Confidence 33345679999999999999999988875 56788888886654443322 34578999993 2 23456
Q ss_pred CCCCCcEEeecch
Q 047490 88 VYGDIKYLVLDEA 100 (323)
Q Consensus 88 ~~~~~~~vIiDE~ 100 (323)
.+..+++||.-+.
T Consensus 315 di~~~~~Vi~~~~ 327 (391)
T 1xti_A 315 DIERVNIAFNYDM 327 (391)
T ss_dssp CCTTEEEEEESSC
T ss_pred CcccCCEEEEeCC
Confidence 7788888887554
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=87.30 E-value=1.1 Score=40.67 Aligned_cols=79 Identities=10% Similarity=0.106 Sum_probs=58.7
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCCCC
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMVYG 90 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~~~ 90 (323)
.++.++||.|+|+.-+..+++.+++... .+..+..++|+.....+...+ .+..+|+|+|. .+ ...+.+.
T Consensus 286 ~~~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~-~~GiDip 358 (579)
T 3sqw_A 286 DSNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VG-ARGMDFP 358 (579)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GG-TSSCCCT
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hh-hcCCCcc
Confidence 5567999999999999999999988754 256888899987655443332 35578999993 23 3467788
Q ss_pred CCcEEeecch
Q 047490 91 DIKYLVLDEA 100 (323)
Q Consensus 91 ~~~~vIiDE~ 100 (323)
++++||.-+.
T Consensus 359 ~v~~VI~~~~ 368 (579)
T 3sqw_A 359 NVHEVLQIGV 368 (579)
T ss_dssp TCCEEEEESC
T ss_pred cCCEEEEcCC
Confidence 8999987554
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=87.24 E-value=1.1 Score=39.11 Aligned_cols=69 Identities=16% Similarity=0.261 Sum_probs=52.0
Q ss_pred cEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCCCCCCcE
Q 047490 19 RAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMVYGDIKY 94 (323)
Q Consensus 19 ~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~ 94 (323)
.+||.|+++.-+..+++.+++. +..+..++|+....++...+ .+...|+|+|. . -...+.+.++++
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v-~~rGlDi~~v~~ 371 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----V-ASRGLDIKNIKH 371 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----G-GTSSCCCTTCCE
T ss_pred CEEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----h-hhCCCCcccCCE
Confidence 4999999999999999888875 56788899987655443332 34578999994 2 334677888888
Q ss_pred Eee
Q 047490 95 LVL 97 (323)
Q Consensus 95 vIi 97 (323)
||.
T Consensus 372 VI~ 374 (434)
T 2db3_A 372 VIN 374 (434)
T ss_dssp EEE
T ss_pred EEE
Confidence 885
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.71 E-value=1.4 Score=37.87 Aligned_cols=72 Identities=14% Similarity=0.221 Sum_probs=53.8
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMVYGD 91 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~~~~ 91 (323)
++.++||.+++++-+..+++.+++. +..+..++|+.....+...+ .+..+|+|+|. .+. ..+.+.+
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~-~Gidip~ 344 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAA-RGLDISN 344 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHH-TTSCCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhh-cCCCccc
Confidence 5678999999999999999888775 56888899887655443332 34578999993 333 3567788
Q ss_pred CcEEee
Q 047490 92 IKYLVL 97 (323)
Q Consensus 92 ~~~vIi 97 (323)
+++||.
T Consensus 345 v~~Vi~ 350 (417)
T 2i4i_A 345 VKHVIN 350 (417)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 888875
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=86.57 E-value=4.6 Score=30.70 Aligned_cols=94 Identities=19% Similarity=0.155 Sum_probs=58.7
Q ss_pred EEeccCChhHHHH-HHHHhccCC-----CCCCeEEEEecCcccHHHHHHHHhhC--CCeeEEecCCCCHHHHHHHHHhcc
Q 047490 174 FIKLSGSENKLEA-LLQVLEPSL-----SKGNKVMVFCNTLNSSRAVDHFLNEN--QISTVNYHGEVPAQERVENLNKFK 245 (323)
Q Consensus 174 ~~~~~~~~~k~~~-l~~~l~~~~-----~~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~ 245 (323)
....+.+..|... +..++.... ..+.++++.++++..+..+++.++.. +..+..++|+.+.......+.
T Consensus 42 li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 118 (207)
T 2gxq_A 42 IGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL--- 118 (207)
T ss_dssp EEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH---
T ss_pred EEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh---
Confidence 3444555666654 333332221 24568999999999999999888765 467788888877554433222
Q ss_pred ccCCCCCEEEEecc-----ccc-ccCC-CCCEEEE
Q 047490 246 NEDGDCPTLVCTDL-----AAR-GLDL-DVDHVIM 273 (323)
Q Consensus 246 ~~~g~~~ilv~t~~-----~~~-Gid~-~~~~vi~ 273 (323)
...+|+|+|+- +.. .+++ +++.+|.
T Consensus 119 ---~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iVi 150 (207)
T 2gxq_A 119 ---RGADAVVATPGRALDYLRQGVLDLSRVEVAVL 150 (207)
T ss_dssp ---HCCSEEEECHHHHHHHHHHTSSCCTTCSEEEE
T ss_pred ---CCCCEEEECHHHHHHHHHcCCcchhhceEEEE
Confidence 23569999962 122 3456 6777776
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=86.48 E-value=0.84 Score=39.13 Aligned_cols=77 Identities=6% Similarity=0.128 Sum_probs=54.9
Q ss_pred cCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCC
Q 047490 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMV 88 (323)
Q Consensus 13 ~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~ 88 (323)
...++.++||.++++.-+..+++.+++. +..+..++|+.....+...+ .+...|+|+|. . -...+.
T Consensus 254 ~~~~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~-~~~Gid 323 (400)
T 1s2m_A 254 SKLQINQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----L-LTRGID 323 (400)
T ss_dssp HHSCCSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----C-SSSSCC
T ss_pred hhcCCCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----c-cccCCC
Confidence 3345679999999999999999988876 55788888887654443322 34578999993 2 233566
Q ss_pred CCCCcEEeecc
Q 047490 89 YGDIKYLVLDE 99 (323)
Q Consensus 89 ~~~~~~vIiDE 99 (323)
+.++++||.-+
T Consensus 324 ip~~~~Vi~~~ 334 (400)
T 1s2m_A 324 IQAVNVVINFD 334 (400)
T ss_dssp CTTEEEEEESS
T ss_pred ccCCCEEEEeC
Confidence 77888888533
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
Probab=85.91 E-value=2.2 Score=39.62 Aligned_cols=70 Identities=13% Similarity=0.123 Sum_probs=48.4
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEE
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYL 95 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~v 95 (323)
.+.++||.||+++-+.++++.|++. +.++..++|+...........+..+|+|+| +.+. ..+.+. +++|
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~eR~~v~~~F~~g~~~VLVaT-----dv~e-~GIDip-v~~V 477 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRKSYDTEYPKCKNGDWDFVITT-----DISE-MGANFG-ASRV 477 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSSHHHHGGGGGTCCCSEEEEC-----GGGG-TTCCCC-CSEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChHHHHHHHHHHHCCCceEEEEC-----chhh-cceeeC-CcEE
Confidence 3678999999999999998888775 568888888522222222224567999999 3333 345566 7776
Q ss_pred e
Q 047490 96 V 96 (323)
Q Consensus 96 I 96 (323)
|
T Consensus 478 I 478 (673)
T 2wv9_A 478 I 478 (673)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
Probab=85.78 E-value=3.3 Score=32.52 Aligned_cols=96 Identities=11% Similarity=0.146 Sum_probs=54.3
Q ss_pred eEEeccCChhHHHHH-HHHhccCC--CCCCeEEEEecCcccHHHHHHHHhhC----CCeeEEecCCCCHHHHHHHHHhcc
Q 047490 173 DFIKLSGSENKLEAL-LQVLEPSL--SKGNKVMVFCNTLNSSRAVDHFLNEN----QISTVNYHGEVPAQERVENLNKFK 245 (323)
Q Consensus 173 ~~~~~~~~~~k~~~l-~~~l~~~~--~~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~ 245 (323)
.....+.+..|.... +.++.... ..+.++||.++++..+..+++.++.. +..+..++|+.+... ..+...
T Consensus 70 ~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~ 146 (237)
T 3bor_A 70 VIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQ 146 (237)
T ss_dssp EEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC---------------
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHh
Confidence 344455567776543 33332221 24569999999999999888887654 456777777755332 223444
Q ss_pred ccCCCCCEEEEec-----cccc-ccCC-CCCEEEE
Q 047490 246 NEDGDCPTLVCTD-----LAAR-GLDL-DVDHVIM 273 (323)
Q Consensus 246 ~~~g~~~ilv~t~-----~~~~-Gid~-~~~~vi~ 273 (323)
. +..+|+|+|+ .+.. .+++ .++.+|.
T Consensus 147 ~--~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lVi 179 (237)
T 3bor_A 147 A--EAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVL 179 (237)
T ss_dssp ---CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEE
T ss_pred c--CCCCEEEECHHHHHHHHHhCCcCcccCcEEEE
Confidence 4 6678999994 2223 3556 6777776
|
| >3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1} | Back alignment and structure |
|---|
Probab=85.77 E-value=1.3 Score=30.04 Aligned_cols=38 Identities=26% Similarity=0.419 Sum_probs=33.3
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCC
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 233 (323)
.+..++++||.+-..+...+..|+..|+.+..+.|++.
T Consensus 53 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 53 ERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp CTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 46679999999988899999999999998888999854
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=85.19 E-value=1.3 Score=37.29 Aligned_cols=75 Identities=13% Similarity=0.303 Sum_probs=53.6
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCCCC
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMVYG 90 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~~~ 90 (323)
.++.++||.+++++-+.++++.+++. +..+..++|+.....+...+ .+..+|+|+|. .+.. .+.+.
T Consensus 236 ~~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~-Gid~~ 305 (367)
T 1hv8_A 236 NKEFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMSR-GIDVN 305 (367)
T ss_dssp STTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THHH-HCCCS
T ss_pred cCCCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhc-CCCcc
Confidence 45678999999999999999988876 56788888886654443322 34578999993 2222 45577
Q ss_pred CCcEEeecc
Q 047490 91 DIKYLVLDE 99 (323)
Q Consensus 91 ~~~~vIiDE 99 (323)
++++||.-+
T Consensus 306 ~~~~Vi~~~ 314 (367)
T 1hv8_A 306 DLNCVINYH 314 (367)
T ss_dssp CCSEEEESS
T ss_pred cCCEEEEec
Confidence 788888644
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.16 E-value=2.8 Score=33.29 Aligned_cols=70 Identities=11% Similarity=0.147 Sum_probs=49.8
Q ss_pred CCeEEEEecCcccHHHHHHHHhhC----CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc-----c--ccccCC
Q 047490 198 GNKVMVFCNTLNSSRAVDHFLNEN----QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL-----A--ARGLDL 266 (323)
Q Consensus 198 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~-----~--~~Gid~ 266 (323)
+.++||.++++..+..+++.++.. +..+..++|+.+...+...+ . +..+|+|+|+- + ..++++
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~---~~~~I~v~Tp~~l~~~l~~~~~~~l 184 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL---A---KKPHIIIATPGRLIDHLENTKGFNL 184 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH---H---TCCSEEEECHHHHHHHHHHSTTCCC
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh---c---CCCCEEEECHHHHHHHHHcCCCcCc
Confidence 457999999999998888777654 77888899988755543322 2 44679999952 1 134667
Q ss_pred -CCCEEEE
Q 047490 267 -DVDHVIM 273 (323)
Q Consensus 267 -~~~~vi~ 273 (323)
+++.+|.
T Consensus 185 ~~~~~lVi 192 (249)
T 3ber_A 185 RALKYLVM 192 (249)
T ss_dssp TTCCEEEE
T ss_pred cccCEEEE
Confidence 7887776
|
| >3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} | Back alignment and structure |
|---|
Probab=84.00 E-value=3 Score=36.33 Aligned_cols=62 Identities=23% Similarity=0.217 Sum_probs=38.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEee
Q 047490 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVL 97 (323)
Q Consensus 18 ~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vIi 97 (323)
...+|++||++++.++.+.+..... . .....-+.|-++++. ..........+.+|+
T Consensus 185 ~~~lVlTpT~~aa~~l~~kl~~~~~-------------~---------~~~~~~V~T~dsfL~--~~~~~~~~~~d~lii 240 (446)
T 3vkw_A 185 EEDLILVPGRQAAEMIRRRANASGI-------------I---------VATKDNVRTVDSFLM--NYGKGARCQFKRLFI 240 (446)
T ss_dssp TTCEEEESCHHHHHHHHHHHTTTSC-------------C---------CCCTTTEEEHHHHHH--TTTSSCCCCCSEEEE
T ss_pred CCeEEEeCCHHHHHHHHHHhhhcCc-------------c---------ccccceEEEeHHhhc--CCCCCCCCcCCEEEE
Confidence 3679999999999998887743210 0 001233678666542 222222235899999
Q ss_pred cchhhh
Q 047490 98 DEADTM 103 (323)
Q Consensus 98 DE~h~~ 103 (323)
||+-.+
T Consensus 241 DE~sm~ 246 (446)
T 3vkw_A 241 DEGLML 246 (446)
T ss_dssp ETGGGS
T ss_pred eCcccC
Confidence 999754
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=83.97 E-value=0.95 Score=38.95 Aligned_cols=74 Identities=11% Similarity=0.204 Sum_probs=53.9
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMVYGD 91 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~~~~ 91 (323)
...++||.|+++.-+..+++.+++. +..+..++|+....++...+ .+...|+|+|. . -...+.+.+
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~-~~~Gidi~~ 344 (410)
T 2j0s_A 275 TITQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----V-WARGLDVPQ 344 (410)
T ss_dssp TSSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----G-GSSSCCCTT
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----h-hhCcCCccc
Confidence 3568999999999999999888875 55788888887655443332 34578999993 2 334677888
Q ss_pred CcEEeecc
Q 047490 92 IKYLVLDE 99 (323)
Q Consensus 92 ~~~vIiDE 99 (323)
+++||.-+
T Consensus 345 v~~Vi~~~ 352 (410)
T 2j0s_A 345 VSLIINYD 352 (410)
T ss_dssp EEEEEESS
T ss_pred CCEEEEEC
Confidence 88888633
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.59 E-value=4.8 Score=31.23 Aligned_cols=71 Identities=11% Similarity=0.208 Sum_probs=45.9
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhC---CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc-----c-ccccCC-
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNEN---QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL-----A-ARGLDL- 266 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~-----~-~~Gid~- 266 (323)
.+.++|+.++++..+..+++.++.. +..+..++|+.+...+.. .+. ...+|+|+|+- + ...+++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~iiv~Tp~~l~~~~~~~~~~~~ 166 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIE---DIS---KGVDIIIATPGRLNDLQMNNSVNLR 166 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHH---HHH---SCCSEEEECHHHHHHHHHTTCCCCT
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHH---Hhc---CCCCEEEECHHHHHHHHHcCCcCcc
Confidence 5678999999999999998888764 677888888876444332 223 33679999952 1 224556
Q ss_pred CCCEEEE
Q 047490 267 DVDHVIM 273 (323)
Q Consensus 267 ~~~~vi~ 273 (323)
+++.+|.
T Consensus 167 ~~~~lVi 173 (228)
T 3iuy_A 167 SITYLVI 173 (228)
T ss_dssp TCCEEEE
T ss_pred cceEEEE
Confidence 7877776
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
Probab=83.37 E-value=4.2 Score=31.68 Aligned_cols=93 Identities=11% Similarity=0.175 Sum_probs=59.7
Q ss_pred EEeccCChhHHHH-HHHHhccCC--CCCCeEEEEecCcccHHHHHHHHhhC-----CCeeEEecCCCCHHHHHHHHHhcc
Q 047490 174 FIKLSGSENKLEA-LLQVLEPSL--SKGNKVMVFCNTLNSSRAVDHFLNEN-----QISTVNYHGEVPAQERVENLNKFK 245 (323)
Q Consensus 174 ~~~~~~~~~k~~~-l~~~l~~~~--~~~~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~ 245 (323)
....+.+..|... ++.++.... ..+.++||.++++..+..+++.++.. +..+..++|+.+...+...+
T Consensus 65 l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---- 140 (230)
T 2oxc_A 65 IVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL---- 140 (230)
T ss_dssp EEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT----
T ss_pred EEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc----
Confidence 3444555666654 333333221 24579999999999999988887753 67788899998866554322
Q ss_pred ccCCCCCEEEEecc-c-----ccccCC-CCCEEEE
Q 047490 246 NEDGDCPTLVCTDL-A-----ARGLDL-DVDHVIM 273 (323)
Q Consensus 246 ~~~g~~~ilv~t~~-~-----~~Gid~-~~~~vi~ 273 (323)
...+|+|+|+- + ...+++ +++.+|.
T Consensus 141 ---~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 141 ---KKCHIAVGSPGRIKQLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp ---TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEE
T ss_pred ---cCCCEEEECHHHHHHHHhcCCcccccCCEEEe
Confidence 23569999963 1 123556 6777766
|
| >3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp} | Back alignment and structure |
|---|
Probab=83.28 E-value=1.2 Score=29.75 Aligned_cols=38 Identities=21% Similarity=0.437 Sum_probs=32.9
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCC
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 233 (323)
.+..++++||.+-..+...+..|+..|+.+..+.|++.
T Consensus 54 ~~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 54 NDNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 35679999999998999999999999998888888854
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=82.99 E-value=1.8 Score=37.85 Aligned_cols=77 Identities=16% Similarity=0.207 Sum_probs=52.7
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeec--------CccCCcccccc----CCCCCEEEeChHHHHHHH
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSG--------GGRLRPQEDSL----NNPIDMVVGTPGRILQHI 82 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~ 82 (323)
.++.++||.++++.-+..+.+.++.. ++.+..++| +.....+...+ .+...|+|+|. .+
T Consensus 359 ~~~~k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~-----~~ 429 (494)
T 1wp9_A 359 KQNSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATS-----VG 429 (494)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECG-----GG
T ss_pred CCCCeEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECC-----cc
Confidence 46789999999999999998888876 567888888 44444333222 34578999992 22
Q ss_pred HcCCCCCCCCcEEeecchh
Q 047490 83 EDGNMVYGDIKYLVLDEAD 101 (323)
Q Consensus 83 ~~~~~~~~~~~~vIiDE~h 101 (323)
...+.+..+++||+-+..
T Consensus 430 -~~Gldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 430 -EEGLDVPEVDLVVFYEPV 447 (494)
T ss_dssp -GGGGGSTTCCEEEESSCC
T ss_pred -ccCCCchhCCEEEEeCCC
Confidence 235667778888865543
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=82.75 E-value=3.6 Score=36.02 Aligned_cols=69 Identities=13% Similarity=0.070 Sum_probs=48.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEe
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLV 96 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vI 96 (323)
+.++||.+|++.-+.++++.+++. +..+..++++.........-.+..+|+|+| +.+. ..+.+.. ++||
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~~~~~~f~~g~~~vLVaT-----~v~~-~GiDip~-~~VI 256 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFDTEYPKTKLTDWDFVVTT-----DISE-MGANFRA-GRVI 256 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTHHHHGGGGGSSCCSEEEEC-----GGGG-SSCCCCC-SEEE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHHHHHHHhhccCCceEEEEC-----CHHH-hCcCCCC-CEEE
Confidence 458999999999999999988775 567778887655322222234567999999 3333 3455666 7766
|
| >3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A | Back alignment and structure |
|---|
Probab=82.62 E-value=1.4 Score=29.74 Aligned_cols=38 Identities=26% Similarity=0.364 Sum_probs=32.4
Q ss_pred CCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCC
Q 047490 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVP 233 (323)
Q Consensus 196 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 233 (323)
.+..++++||.+-..+...+..|+..|+.+..+.|++.
T Consensus 54 ~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~~ 91 (103)
T 3iwh_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred cCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChHH
Confidence 45679999999988899999999999998887888753
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
Probab=82.60 E-value=1.8 Score=42.52 Aligned_cols=92 Identities=16% Similarity=0.200 Sum_probs=61.6
Q ss_pred cCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC----CC----eeEEecCCCCHHHHHHHHHhccccCC
Q 047490 178 SGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN----QI----STVNYHGEVPAQERVENLNKFKNEDG 249 (323)
Q Consensus 178 ~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~----~~----~~~~~~~~~~~~~r~~~~~~f~~~~g 249 (323)
+.+..|....+-.+......+.+++|.+|++..+..+++.++.. +. .+..++|+.+...+....+.+..
T Consensus 79 pTGSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--- 155 (1054)
T 1gku_B 79 PTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--- 155 (1054)
T ss_dssp CBTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG---
T ss_pred CCCCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC---
Confidence 33444543333333333345679999999999999888877643 45 78899999998887777777763
Q ss_pred CCCEEEEecc-cccccC-C-CCCEEEE
Q 047490 250 DCPTLVCTDL-AARGLD-L-DVDHVIM 273 (323)
Q Consensus 250 ~~~ilv~t~~-~~~Gid-~-~~~~vi~ 273 (323)
.+|+|+|+- +..-+. + +++.+|.
T Consensus 156 -~~IlV~TP~~L~~~l~~L~~l~~lVi 181 (1054)
T 1gku_B 156 -FKIVITTTQFLSKHYRELGHFDFIFV 181 (1054)
T ss_dssp -CSEEEEEHHHHHHCSTTSCCCSEEEE
T ss_pred -CCEEEEcHHHHHHHHHHhccCCEEEE
Confidence 679999962 222222 4 5666665
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=82.45 E-value=3.1 Score=32.80 Aligned_cols=72 Identities=14% Similarity=0.200 Sum_probs=50.7
Q ss_pred CCCeEEEEecCcccHHHHHHHHhh----CCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc-----ccc-ccCC
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNE----NQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL-----AAR-GLDL 266 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~-----~~~-Gid~ 266 (323)
.+.++||.++++..+..+.+.++. .+..+..++|+.+.......+. ...+|+|+|+- +.. .+++
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~I~v~Tp~~l~~~l~~~~~~~ 174 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE------RGVEICIATPGRLIDFLECGKTNL 174 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH------HCCSEEEECHHHHHHHHHHTSCCC
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc------CCCCEEEECHHHHHHHHHcCCCCc
Confidence 456899999999999888776654 3788899999988666544332 23569999962 222 3467
Q ss_pred -CCCEEEEc
Q 047490 267 -DVDHVIMF 274 (323)
Q Consensus 267 -~~~~vi~~ 274 (323)
+++.+|.=
T Consensus 175 ~~~~~lViD 183 (242)
T 3fe2_A 175 RRTTYLVLD 183 (242)
T ss_dssp TTCCEEEET
T ss_pred ccccEEEEe
Confidence 78877763
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.38 E-value=3.6 Score=32.18 Aligned_cols=70 Identities=17% Similarity=0.227 Sum_probs=47.2
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhC----CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc-c----cc--ccC
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNEN----QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL-A----AR--GLD 265 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~-~----~~--Gid 265 (323)
.+.+++|.++++..+..+++.++.. +..+..++|+.+.......+ +..+|+|+|+- + .. .++
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~iiv~Tp~~l~~~l~~~~~~~ 168 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-------NNINILVCTPGRLLQHMDETVSFH 168 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-------TTCSEEEECHHHHHHHHHHCSSCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-------CCCCEEEECHHHHHHHHHhcCCcc
Confidence 4568999999999999888877764 47788899987755443322 23569999952 2 11 355
Q ss_pred C-CCCEEEE
Q 047490 266 L-DVDHVIM 273 (323)
Q Consensus 266 ~-~~~~vi~ 273 (323)
+ +++.+|.
T Consensus 169 ~~~~~~lVi 177 (236)
T 2pl3_A 169 ATDLQMLVL 177 (236)
T ss_dssp CTTCCEEEE
T ss_pred cccccEEEE
Confidence 6 6777766
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=81.42 E-value=1.6 Score=38.07 Aligned_cols=68 Identities=9% Similarity=0.005 Sum_probs=46.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEE
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYL 95 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~v 95 (323)
+.++||.+|+++-+..+++.+++. +.++..++|+...........+..+|+|+| ..+.. .+.+. +..|
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT-----~v~e~-GiDip-~~~V 238 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFESEYPKCKSEKWDFVITT-----DISEM-GANFK-ADRV 238 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHHHHTTHHHHSCCSEEEEC-----GGGGT-SCCCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHHHHHHhhcCCCCeEEEEC-----chHHc-CcccC-CcEE
Confidence 458999999999999999999886 568888888732221112223567999999 33443 44454 5554
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=80.96 E-value=2.6 Score=39.84 Aligned_cols=77 Identities=13% Similarity=0.089 Sum_probs=54.5
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhcc-------ccceeEEEeecCccCCcccccc---------CCCCCEEEeChHHH
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISH-------HARFRSTMVSGGGRLRPQEDSL---------NNPIDMVVGTPGRI 78 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~---------~~~~~Iii~Tp~~l 78 (323)
.++..+||.+|++.-+.++++.+++... ..++.+..++|+....++...+ .+...|+|+|.
T Consensus 301 ~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~--- 377 (773)
T 2xau_A 301 EEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN--- 377 (773)
T ss_dssp SCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT---
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc---
Confidence 3467999999999999999999886321 2467899999987765554433 22457999993
Q ss_pred HHHHHcCCCCCCCCcEEee
Q 047490 79 LQHIEDGNMVYGDIKYLVL 97 (323)
Q Consensus 79 ~~~~~~~~~~~~~~~~vIi 97 (323)
.+. ..+.+.++++||-
T Consensus 378 --iae-~GidIp~v~~VId 393 (773)
T 2xau_A 378 --IAE-TSLTIDGIVYVVD 393 (773)
T ss_dssp --HHH-HTCCCTTEEEEEE
T ss_pred --HHH-hCcCcCCeEEEEe
Confidence 233 3566778887774
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=80.82 E-value=6.2 Score=29.91 Aligned_cols=94 Identities=14% Similarity=0.194 Sum_probs=57.2
Q ss_pred EEeccCChhHHHHHH-HHhccCC--CCCCeEEEEecCcccHHHHHHHHhhC-----CCeeEEecCCCCHHHHHHHHHhcc
Q 047490 174 FIKLSGSENKLEALL-QVLEPSL--SKGNKVMVFCNTLNSSRAVDHFLNEN-----QISTVNYHGEVPAQERVENLNKFK 245 (323)
Q Consensus 174 ~~~~~~~~~k~~~l~-~~l~~~~--~~~~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~ 245 (323)
....+.+..|..... .++.... ..+.++++.++++..+..+++.++.. +..+..++|+.+...... ...
T Consensus 44 lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~ 120 (206)
T 1vec_A 44 LARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM---RLD 120 (206)
T ss_dssp EEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHH---HTT
T ss_pred EEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHH---hcC
Confidence 344444555554322 3332211 23468999999999998888777543 567888899877544322 222
Q ss_pred ccCCCCCEEEEecc-----cccc-cCC-CCCEEEE
Q 047490 246 NEDGDCPTLVCTDL-----AARG-LDL-DVDHVIM 273 (323)
Q Consensus 246 ~~~g~~~ilv~t~~-----~~~G-id~-~~~~vi~ 273 (323)
+..+|+|+|+- +..+ .++ +++.+|.
T Consensus 121 ---~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 152 (206)
T 1vec_A 121 ---DTVHVVIATPGRILDLIKKGVAKVDHVQMIVL 152 (206)
T ss_dssp ---SCCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred ---CCCCEEEeCHHHHHHHHHcCCcCcccCCEEEE
Confidence 45679999962 2222 356 6777776
|
| >2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A | Back alignment and structure |
|---|
Probab=80.34 E-value=3.7 Score=37.71 Aligned_cols=109 Identities=14% Similarity=0.131 Sum_probs=0.0
Q ss_pred hhhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCC----------------------------
Q 047490 7 AMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLR---------------------------- 58 (323)
Q Consensus 7 ~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 58 (323)
++...+.+.++.++++++||...+.++.+.+.+. ++++..+.+.....
T Consensus 214 ~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~----~~~~~R~~~~~r~~~~~~~~~~tl~~~~~~~~~~~~l~~l~~ 289 (624)
T 2gk6_A 214 TIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQT----GLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQ 289 (624)
T ss_dssp HHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTT----TCCEEECCCTGGGSCCCTTTTTBHHHHHTSCSSCHHHHHHHT
T ss_pred HHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhc----CCeEEeeccccchhhccchhhhhHHHHHHhccchHHHHHHHH
Q ss_pred ---------------------ccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEeecchhhhhcCCChhhHHHHHh
Q 047490 59 ---------------------PQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLV 117 (323)
Q Consensus 59 ---------------------~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~ 117 (323)
.........++|+++|...+. ...+.-..+++||+|||. .......++.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vI~~T~~~~~----~~~l~~~~fd~viIDEAs------Q~~e~~~li~ 359 (624)
T 2gk6_A 290 LKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAG----DPRLAKMQFRSILIDEST------QATEPECMVP 359 (624)
T ss_dssp TCC----CCHHHHHHHHHHHHHHHHHHHHTCSEEEEETGGGG----CGGGTTCCCSEEEETTGG------GSCHHHHHHH
T ss_pred HHHhhcccCHHHHHHHHHHHHHHHHHHHhcCCEEEEcChhhc----chhhhcCCCCEEEEeccc------ccCcHHHHHH
Q ss_pred hhccccCCCCCCCceEEEEE
Q 047490 118 PLKNRASKPNGQGFQTVLVS 137 (323)
Q Consensus 118 ~~~~~~~~~~~~~~~~i~~s 137 (323)
.+.... ++++++
T Consensus 360 l~~~~~--------~~ilvG 371 (624)
T 2gk6_A 360 VVLGAK--------QLILVG 371 (624)
T ss_dssp HTTTBS--------EEEEEE
T ss_pred HHhcCC--------eEEEec
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 323 | ||||
| d1hv8a1 | 208 | c.37.1.19 (A:3-210) Putative DEAD box RNA helicase | 9e-25 | |
| d2bmfa2 | 305 | c.37.1.14 (A:178-482) Dengue virus helicase {Dengu | 6e-24 | |
| d1wp9a2 | 286 | c.37.1.19 (A:201-486) putative ATP-dependent RNA h | 2e-21 | |
| d1a1va2 | 299 | c.37.1.14 (A:326-624) HCV helicase domain {Human h | 4e-21 | |
| d1wrba1 | 238 | c.37.1.19 (A:164-401) putative ATP-dependent RNA h | 5e-18 | |
| d1gkub2 | 248 | c.37.1.16 (B:251-498) Helicase-like "domain" of re | 1e-17 | |
| d1qdea_ | 212 | c.37.1.19 (A:) Initiation factor 4a {Baker's yeast | 3e-17 | |
| d1hv8a2 | 155 | c.37.1.19 (A:211-365) Putative DEAD box RNA helica | 3e-17 | |
| d2g9na1 | 218 | c.37.1.19 (A:21-238) Initiation factor 4a {Human ( | 7e-17 | |
| d1fuka_ | 162 | c.37.1.19 (A:) Initiation factor 4a {Baker's yeast | 1e-16 | |
| d2j0sa1 | 222 | c.37.1.19 (A:22-243) Probable ATP-dependent RNA he | 4e-16 | |
| d2j0sa2 | 168 | c.37.1.19 (A:244-411) Probable ATP-dependent RNA h | 8e-16 | |
| d1jr6a_ | 138 | c.37.1.14 (A:) HCV helicase domain {Human hepatiti | 1e-14 | |
| d1t5la2 | 181 | c.37.1.19 (A:415-595) Nucleotide excision repair e | 2e-14 | |
| d1t6na_ | 207 | c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 | 3e-14 | |
| d2rb4a1 | 168 | c.37.1.19 (A:307-474) ATP-dependent RNA helicase D | 3e-13 | |
| d1gkub1 | 237 | c.37.1.16 (B:1-250) Helicase-like "domain" of reve | 7e-13 | |
| d1veca_ | 206 | c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Huma | 1e-12 | |
| d2fwra1 | 200 | c.37.1.19 (A:257-456) DNA repair protein RAD25 {Ar | 2e-12 | |
| d1oywa2 | 206 | c.37.1.19 (A:1-206) RecQ helicase domain {Escheric | 2e-12 | |
| d1oywa3 | 200 | c.37.1.19 (A:207-406) RecQ helicase domain {Escher | 3e-11 | |
| d1s2ma1 | 206 | c.37.1.19 (A:46-251) Putative ATP-dependent RNA he | 2e-10 | |
| d1s2ma2 | 171 | c.37.1.19 (A:252-422) Putative ATP-dependent RNA h | 2e-08 | |
| d1t5ia_ | 168 | c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP5 | 5e-08 | |
| d1yksa2 | 299 | c.37.1.14 (A:325-623) YFV helicase domain {Yellow | 3e-07 | |
| d2p6ra4 | 201 | c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglob | 1e-06 | |
| d1q0ua_ | 209 | c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR | 3e-06 | |
| d1z3ix1 | 346 | c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fi | 1e-05 | |
| d2p6ra3 | 202 | c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus | 1e-05 | |
| d1tf5a4 | 175 | c.37.1.19 (A:396-570) Translocation ATPase SecA, n | 2e-05 |
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 208 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 97.4 bits (242), Expect = 9e-25
Identities = 47/138 (34%), Positives = 71/138 (51%), Gaps = 9/138 (6%)
Query: 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVV 72
+ A++L PTREL+ QV +S+ + + + GG + PQ +L N ++VV
Sbjct: 68 NENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNA-NIVV 126
Query: 73 GTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQ 132
GTPGRIL HI G + ++KY +LDEAD M + GF D+ K L +
Sbjct: 127 GTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDK--------R 178
Query: 133 TVLVSATMTKAVQKLVDE 150
+L SATM + + L +
Sbjct: 179 ILLFSATMPREILNLAKK 196
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Score = 97.3 bits (241), Expect = 6e-24
Identities = 33/302 (10%), Positives = 73/302 (24%), Gaps = 67/302 (22%)
Query: 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTP 75
R R ++L PTR ++ ++ + + + + +
Sbjct: 37 RGLRTLILAPTRVVAAEMEEALRGLPIRY-----------QTPAIRAEHTGREIVDLMCH 85
Query: 76 GRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVL 135
+ V + +++DEA R ++ +
Sbjct: 86 ATFTMRLLSPIRVP-NYNLIIMDEAHFTDPASI--AARGYISTRVEMGE------AAGIF 136
Query: 136 VSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSL 195
++AT + + I E + E
Sbjct: 137 MTATPPGSRDPF---------------------PQSNAPIMDEEREIPERSWNSGHEWVT 175
Query: 196 SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255
K + F ++ + + L +N + + E ++ D +V
Sbjct: 176 DFKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEYIKTRTN------DWDFVV 229
Query: 256 CTDLAARGLDLDVDHVIMFDF--------------------PLNSIDYLHRTGRTARMGA 295
TD++ G + + VI P+ R GR R
Sbjct: 230 TTDISEMGANFKAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPK 289
Query: 296 KG 297
Sbjct: 290 NE 291
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 90.3 bits (223), Expect = 2e-21
Identities = 48/236 (20%), Positives = 94/236 (39%), Gaps = 44/236 (18%)
Query: 95 LVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQG 154
L L A + + +R ++ L A + + + + M KA+ LV + G
Sbjct: 80 LKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIG 139
Query: 155 IAHLRTSTLHKKIASARHDFIKLSGSENKLEALLQVLEPSLSK--GNKVMVFCNTLNSSR 212
+ H K++ L +++ L + +K++VF N +++
Sbjct: 140 LDH------------------------PKMDKLKEIIREQLQRKQNSKIIVFTNYRETAK 175
Query: 213 AVDHFLNENQISTVNYHGEVPAQERV--------ENLNKFKNEDGDCPTLVCTDLAARGL 264
+ + L ++ I + G+ + L++F G+ LV T + GL
Sbjct: 176 KIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFAR--GEFNVLVATSVGEEGL 233
Query: 265 DL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIR 319
D+ +VD V+ ++ ++I + R GRT R G+V L+AK +EA
Sbjct: 234 DVPEVDLVVFYEPVPSAIRSIQRRGRTGRHM-PGRVIILMAK------GTRDEAYY 282
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 89.2 bits (221), Expect = 4e-21
Identities = 21/155 (13%), Positives = 49/155 (31%), Gaps = 19/155 (12%)
Query: 169 SARHDFIKLS--GSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTV 226
+ H I+ + ++ + + + KG + ++FC++ + L I+ V
Sbjct: 5 TVPHPNIEEVALSTTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGINAV 64
Query: 227 NYHGEVP----------AQERVENLNKFKNEDGDCPTLVCTDLAARGLDLD----VDHVI 272
Y+ + + L GD +++ + +
Sbjct: 65 AYYRGLDVSVIPTSGDVVVVATDALMTGFT--GDFDSVIDCNTCVTQTVDFSLDPTFTIE 122
Query: 273 MFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307
P +++ R GRT R G G + +
Sbjct: 123 TTTLPQDAVSRTQRRGRTGR-GKPGIYRFVAPGER 156
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Score = 79.6 bits (195), Expect = 5e-18
Identities = 50/137 (36%), Positives = 74/137 (54%), Gaps = 4/137 (2%)
Query: 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVG 73
K P+ ++L PTREL+ Q+ ++ S + RS +V GG Q + ++V
Sbjct: 95 KTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVA 154
Query: 74 TPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQT 133
TPGR++ IE + KY+VLDEAD M D GF P IRK + ++ P+G QT
Sbjct: 155 TPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKII----EESNMPSGINRQT 210
Query: 134 VLVSATMTKAVQKLVDE 150
++ SAT K +QKL +
Sbjct: 211 LMFSATFPKEIQKLAAD 227
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 248 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 78.7 bits (193), Expect = 1e-17
Identities = 19/145 (13%), Positives = 44/145 (30%), Gaps = 17/145 (11%)
Query: 180 SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVE 239
++ + L +LE G +++ T + + L + + +
Sbjct: 10 NDESISTLSSILE---KLGTGGIIYARTGEEAEEIYESLKNK------FRIGIVTATKKG 60
Query: 240 NLNKFKNEDGD--CPTLVCTDLAARGLDL--DVDHVIMFDFPLNSIDYLHRTGRTARMGA 295
+ KF + D T RGLDL + + P + +
Sbjct: 61 DYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCP----SFRVTIEDIDSLSP 116
Query: 296 KGKVTSLVAKKDVLLADRIEEAIRK 320
+ ++V +R+ A+ +
Sbjct: 117 QMVKLLAYLYRNVDEIERLLPAVER 141
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 76.8 bits (188), Expect = 3e-17
Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 9/140 (6%)
Query: 11 VLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDM 70
+ + P+A++L PTREL+ Q+ +V +++ H + GG + L + +
Sbjct: 72 IDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDA-QI 130
Query: 71 VVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQG 130
VVGTPGR+ +I+ IK +LDEAD M GF I + L
Sbjct: 131 VVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTT------- 183
Query: 131 FQTVLVSATMTKAVQKLVDE 150
Q VL+SATM V ++ +
Sbjct: 184 -QVVLLSATMPNDVLEVTTK 202
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 155 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 75.4 bits (184), Expect = 3e-17
Identities = 35/152 (23%), Positives = 66/152 (43%), Gaps = 7/152 (4%)
Query: 171 RHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHG 230
+++++ + EAL ++L+ +K +VFC T + I
Sbjct: 5 EQSYVEVN-ENERFEALCRLLK---NKEFYGLVFCKTKR--DTKELASMLRDIGFKAGAI 58
Query: 231 EVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGR 289
+ + L+ TD+ +RG+D++ ++ VI + P N Y+HR GR
Sbjct: 59 HGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGR 118
Query: 290 TARMGAKGKVTSLVAKKDVLLADRIEEAIRKN 321
T R G KGK S++ +++ IE A++
Sbjct: 119 TGRAGKKGKAISIINRREYKKLRYIERAMKLK 150
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} Length = 218 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Score = 76.0 bits (186), Expect = 7e-17
Identities = 41/151 (27%), Positives = 67/151 (44%), Gaps = 9/151 (5%)
Query: 1 LLRHDEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ 60
+ + + + +A+VL PTREL++Q+ +V ++ + GG +R +
Sbjct: 64 ATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE 123
Query: 61 -EDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL 119
+ ++VGTPGR+ + + IK VLDEAD M RGF I L
Sbjct: 124 VQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKL 183
Query: 120 KNRASKPNGQGFQTVLVSATMTKAVQKLVDE 150
+ Q VL+SATM V ++ +
Sbjct: 184 NSNT--------QVVLLSATMPSDVLEVTKK 206
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 74.2 bits (181), Expect = 1e-16
Identities = 41/151 (27%), Positives = 71/151 (47%), Gaps = 5/151 (3%)
Query: 171 RHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHG 230
+ ++ + E K E L + + + ++FCNT + L ++ + +
Sbjct: 2 KQFYVNVEEEEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYS 59
Query: 231 EVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGR 289
++P QER + +F++ L+ TDL ARG+D+ V VI +D P N +Y+HR GR
Sbjct: 60 DLPQQERDTIMKEFRSGSSRI--LISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGR 117
Query: 290 TARMGAKGKVTSLVAKKDVLLADRIEEAIRK 320
R G KG + V +DV +E+
Sbjct: 118 GGRFGRKGVAINFVTNEDVGAMRELEKFYST 148
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Score = 74.1 bits (181), Expect = 4e-16
Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 8/138 (5%)
Query: 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVV 72
++ R +A++L PTREL+ Q+ + ++ + + GG + L+ +V
Sbjct: 81 IQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVA 140
Query: 73 GTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQ 132
GTPGR+ I ++ IK LVLDEAD M ++GF I L Q
Sbjct: 141 GTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT--------Q 192
Query: 133 TVLVSATMTKAVQKLVDE 150
VL+SAT+ + ++ ++
Sbjct: 193 VVLISATLPHEILEMTNK 210
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Score = 71.9 bits (175), Expect = 8e-16
Identities = 42/151 (27%), Positives = 73/151 (48%), Gaps = 5/151 (3%)
Query: 171 RHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHG 230
+ F+ + E K + L + + + ++FCNT + + E + + HG
Sbjct: 9 KQFFVAVEREEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHG 66
Query: 231 EVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGR 289
++P +ER + +F++ G L+ TD+ ARGLD+ V +I +D P N Y+HR GR
Sbjct: 67 DMPQKERESIMKEFRS--GASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGR 124
Query: 290 TARMGAKGKVTSLVAKKDVLLADRIEEAIRK 320
+ R G KG + V D+ + IE+
Sbjct: 125 SGRYGRKGVAINFVKNDDIRILRDIEQYYST 155
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 138 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 67.4 bits (164), Expect = 1e-14
Identities = 24/125 (19%), Positives = 43/125 (34%), Gaps = 14/125 (11%)
Query: 180 SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVE 239
+ ++ + + + KG + ++FC++ + L I+ V Y+ +
Sbjct: 17 TTGEIPFYGKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPT 76
Query: 240 NLNKFKNEDGDCPTLVCTDLAARGLDLDVDHV----IMFDFPLNSIDYLHRTGRTARMGA 295
N +V TD G D D V P +++ R GRT R G
Sbjct: 77 N---------GDVVVVATDALMTGFTGDFDSVIDCNTSDGKPQDAVSRTQRRGRTGR-GK 126
Query: 296 KGKVT 300
G
Sbjct: 127 PGIYR 131
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} Length = 181 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Score = 68.3 bits (166), Expect = 2e-14
Identities = 27/144 (18%), Positives = 55/144 (38%), Gaps = 3/144 (2%)
Query: 180 SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVE 239
++ +++ L+ + + + + +V T + + +L E I H E+ ER+E
Sbjct: 13 TKGQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIE 72
Query: 240 NLNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGK 298
+ + G LV +L GLD+ +V V + D R+ A
Sbjct: 73 IIRDLRL--GKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 130
Query: 299 VTSLVAKKDVLLADRIEEAIRKNE 322
V + +E AI++ +
Sbjct: 131 ANGHVIMYADTITKSMEIAIQETK 154
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Score = 68.4 bits (166), Expect = 3e-14
Identities = 36/141 (25%), Positives = 67/141 (47%), Gaps = 11/141 (7%)
Query: 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGR-LRPQEDSLN-NPIDM 70
+ +V+C TREL+ Q+ + + S + V GG ++ E+ L N +
Sbjct: 65 PVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHI 124
Query: 71 VVGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDR-GFGPDIRKFLVPLKNRASKPNGQ 129
VVGTPGRIL + ++ IK+ +LDE D M ++ D+++ +
Sbjct: 125 VVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEK------ 178
Query: 130 GFQTVLVSATMTKAVQKLVDE 150
Q ++ SAT++K ++ + +
Sbjct: 179 --QVMMFSATLSKEIRPVCRK 197
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 64.9 bits (157), Expect = 7e-13
Identities = 21/155 (13%), Positives = 45/155 (29%), Gaps = 29/155 (18%)
Query: 18 PRAVVLCPTRELSEQVFRVAKSISHHARFRSTMV------SGGGRLRPQEDSLNNPIDMV 71
R V+ PT L Q + + A + + R + +V
Sbjct: 87 KRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIV 146
Query: 72 VGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDR-----------GFGPDIRKFLVPLK 120
+ T + +H G ++ +D+ D + GF D++ +
Sbjct: 147 ITTTQFLSKHY----RELGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVGE 202
Query: 121 NRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGI 155
R ++ +AT K + + +
Sbjct: 203 ARG--------CLMVSTATAKKGKKAELFRQLLNF 229
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.4 bits (153), Expect = 1e-12
Identities = 44/140 (31%), Positives = 72/140 (51%), Gaps = 11/140 (7%)
Query: 13 MKPRRPRAVVLCPTRELSEQVFRVAKSI-SHHARFRSTMVSGGGRLRPQEDSLNNPIDMV 71
+K +A+V+ PTREL+ QV ++ + H + +GG LR L++ + +V
Sbjct: 67 LKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVV 126
Query: 72 VGTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPL-KNRASKPNGQG 130
+ TPGRIL I+ G ++ +VLDEAD + + F + ++ L KNR
Sbjct: 127 IATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNR-------- 178
Query: 131 FQTVLVSATMTKAVQKLVDE 150
Q +L SAT +VQK ++
Sbjct: 179 -QILLYSATFPLSVQKFMNS 197
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 63.0 bits (152), Expect = 2e-12
Identities = 23/132 (17%), Positives = 47/132 (35%), Gaps = 11/132 (8%)
Query: 177 LSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQE 236
S+NK+ L ++LE + +K+++F + I +E
Sbjct: 74 AFNSKNKIRKLREILERH--RKDKIIIFTRHNELVYRISKVFLIPAI-----THRTSREE 126
Query: 237 RVENLNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAK 296
R E L F+ + L D + ++ ++ +Y+ R GR R
Sbjct: 127 REEILEGFRT-GRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKG 185
Query: 297 GK---VTSLVAK 305
K + L+++
Sbjct: 186 KKEAVLYELISR 197
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Score = 63.1 bits (152), Expect = 2e-12
Identities = 18/136 (13%), Positives = 45/136 (33%), Gaps = 4/136 (2%)
Query: 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVV 72
VV+ P L + ++ A ++ + +L I ++
Sbjct: 61 ALLLNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLY 120
Query: 73 GTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQ 132
P R++ ++ + + L +DEA + G ++ + R P
Sbjct: 121 IAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFR-PEYAALGQLRQRFPT---LP 176
Query: 133 TVLVSATMTKAVQKLV 148
+ ++AT ++ +
Sbjct: 177 FMALTATADDTTRQDI 192
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Score = 59.7 bits (143), Expect = 3e-11
Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 5/129 (3%)
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
L+ L++ ++ +G +++CN+ L IS YH + R +
Sbjct: 15 FKPLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADV 72
Query: 241 LNKFKNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKV 299
KF+ +D +V T G++ +V V+ FD P N Y TGR R G +
Sbjct: 73 QEKFQRDDLQI--VVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEA 130
Query: 300 TSLVAKKDV 308
D+
Sbjct: 131 MLFYDPADM 139
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 57.3 bits (137), Expect = 2e-10
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 8/138 (5%)
Query: 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVV 72
K + +A+++ PTREL+ Q +V +++ H + +GG LR LN + ++V
Sbjct: 65 PKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILV 124
Query: 73 GTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQ 132
GTPGR+L D ++DEAD M R F I + L L Q
Sbjct: 125 GTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPT--------HQ 176
Query: 133 TVLVSATMTKAVQKLVDE 150
++L SAT V++ + +
Sbjct: 177 SLLFSATFPLTVKEFMVK 194
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.2 bits (121), Expect = 2e-08
Identities = 44/142 (30%), Positives = 69/142 (48%), Gaps = 5/142 (3%)
Query: 180 SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVE 239
KL L + + N+ ++FCN+ N + + + S H + QER +
Sbjct: 16 ERQKLHCLNTLFS--KLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNK 73
Query: 240 NLNKFKNEDGDCPTLVCTDLAARGLDLD-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGK 298
++F+ G TLVC+DL RG+D+ V+ VI FDFP + YLHR GR+ R G G
Sbjct: 74 VFHEFRQ--GKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGL 131
Query: 299 VTSLVAKKDVLLADRIEEAIRK 320
+L+ D +IE+ +
Sbjct: 132 AINLINWNDRFNLYKIEQELGT 153
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} Length = 168 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.7 bits (117), Expect = 5e-08
Identities = 33/152 (21%), Positives = 64/152 (42%), Gaps = 5/152 (3%)
Query: 171 RHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHG 230
+ ++KL K L +L+ + + N+V++F ++ A+ L E + H
Sbjct: 3 QQYYVKLK-DNEKNRKLFDLLD--VLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHR 59
Query: 231 EVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRT 290
+P +ER+ +FK+ + V+ +D P +S YLHR R
Sbjct: 60 GMPQEERLSRYQQFKDFQ-RRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARA 118
Query: 291 ARMGAKGKVTSLVAKK-DVLLADRIEEAIRKN 321
R G KG + V+ + D + + +++ N
Sbjct: 119 GRFGTKGLAITFVSDENDAKILNDVQDRFEVN 150
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Score = 48.8 bits (116), Expect = 3e-07
Identities = 14/91 (15%), Positives = 31/91 (34%), Gaps = 6/91 (6%)
Query: 198 GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT 257
F ++ ++ + L + S V + + +E K + D ++ T
Sbjct: 36 KRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREY----PTIKQKKPDF--ILAT 89
Query: 258 DLAARGLDLDVDHVIMFDFPLNSIDYLHRTG 288
D+A G +L V+ V+ +
Sbjct: 90 DIAEMGANLCVERVLDCRTAFKPVLVDEGRK 120
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 46.4 bits (109), Expect = 1e-06
Identities = 28/175 (16%), Positives = 58/175 (33%), Gaps = 42/175 (24%)
Query: 173 DFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVN----- 227
+ + S ++ +++E +++ V+VF +T + L+ V
Sbjct: 15 ELFDGAFSTSRRVKFEELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLE 74
Query: 228 -------------------------YHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAAR 262
+H + +R + F+ G+ +V T A
Sbjct: 75 KAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRR--GNIKVVVATPTLAA 132
Query: 263 GLDLDVDHVIMFD--------FPLNSIDYLHRTGRTARMG--AKGKVTSLVAKKD 307
G++L VI+ + +Y GR R G +G+ +V K+D
Sbjct: 133 GVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRD 187
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Score = 45.0 bits (105), Expect = 3e-06
Identities = 28/127 (22%), Positives = 53/127 (41%), Gaps = 8/127 (6%)
Query: 24 CPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIE 83
++ + ++ K + + GG + + LN +V+GTPGRI I
Sbjct: 80 ELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIR 139
Query: 84 DGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKA 143
+ + LV+DEAD M D GF D+ + + Q ++ SAT+ +
Sbjct: 140 EQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKD--------LQMLVFSATIPEK 191
Query: 144 VQKLVDE 150
++ + +
Sbjct: 192 LKPFLKK 198
|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Score = 44.2 bits (103), Expect = 1e-05
Identities = 30/147 (20%), Positives = 57/147 (38%), Gaps = 10/147 (6%)
Query: 175 IKLSGSENKLEALLQVLEPSLSK-GNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVP 233
+LSG K+ L +L + + +KV++ N + + + V G +
Sbjct: 97 PQLSG---KMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMS 153
Query: 234 AQERVENLNKFKNE-DGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTA 291
++R + + +F N + ++ + GL+L + ++MFD N + R
Sbjct: 154 IKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVW 213
Query: 292 RMGAKGKVTSLVAKKDVLLADRIEEAI 318
R G K +L IEE I
Sbjct: 214 RDGQKKTCY----IYRLLSTGTIEEKI 236
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 43.0 bits (100), Expect = 1e-05
Identities = 16/133 (12%), Positives = 39/133 (29%), Gaps = 9/133 (6%)
Query: 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVV 72
+ +++ + P R L+ + + K D++V
Sbjct: 64 EAIKGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDEH----LGDCDIIV 119
Query: 73 GTPGRILQHIEDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQ 132
T + I + + LV+DE + G + + ++ +
Sbjct: 120 TTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKAL-----R 174
Query: 133 TVLVSATMTKAVQ 145
+ +SAT +
Sbjct: 175 VIGLSATAPNVTE 187
|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Score = 42.2 bits (99), Expect = 2e-05
Identities = 28/154 (18%), Positives = 54/154 (35%), Gaps = 19/154 (12%)
Query: 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVEN 240
E K +A+ + + G V+V + +S + L I + + +E
Sbjct: 17 EGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHERE---- 72
Query: 241 LNKFKNEDGDCPTLVC-TDLAARGLD---------LDVDHVIMFDFPLNSIDYLHRTGRT 290
+ E G + T++A RG D L V+ + + GR+
Sbjct: 73 -AQIIEEAGQKGAVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRS 131
Query: 291 ARMGAKGKVTSLVAKKDVLL----ADRIEEAIRK 320
R G G ++ +D L+ A+R + +
Sbjct: 132 GRQGDPGITQFYLSMEDELMRRFGAERTMAMLDR 165
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 323 | |||
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.97 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.97 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.97 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.97 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 99.96 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.96 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.95 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 99.95 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 99.94 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 99.93 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.88 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.87 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 99.87 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.86 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 99.86 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.85 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.85 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.84 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 99.84 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.82 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.82 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.81 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 99.8 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.79 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.75 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.73 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 99.7 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 99.7 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 99.67 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.58 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.57 | |
| d1tf5a4 | 175 | Translocation ATPase SecA, nucleotide-binding doma | 99.56 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.49 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.49 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 99.41 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.35 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 99.33 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.33 | |
| d1nkta4 | 219 | Translocation ATPase SecA, nucleotide-binding doma | 99.18 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.18 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.09 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.08 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 98.61 | |
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 98.33 | |
| d1tf5a3 | 273 | Translocation ATPase SecA, nucleotide-binding doma | 97.81 | |
| d1nkta3 | 288 | Translocation ATPase SecA, nucleotide-binding doma | 97.74 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 97.61 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 97.57 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 96.59 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 96.58 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 95.4 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 95.24 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 95.02 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 94.64 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 94.35 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 94.26 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 94.05 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 93.48 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 93.41 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 91.24 | |
| d2eyqa2 | 117 | Transcription-repair coupling factor, TRCF {Escher | 90.39 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 89.76 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 88.23 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 86.83 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 85.96 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 84.42 | |
| d1tq1a_ | 119 | Thiosulfate sulfurtransferase/Senescence-associate | 84.36 | |
| d1yt8a4 | 130 | Thiosulfate sulfurtransferase PA2603 {Pseudomonas | 83.46 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 82.21 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 82.19 |
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=5.8e-31 Score=198.81 Aligned_cols=148 Identities=28% Similarity=0.524 Sum_probs=133.3
Q ss_pred ceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCC
Q 047490 170 ARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249 (323)
Q Consensus 170 ~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g 249 (323)
+.++|+.+...+.|.+.|.+++... +..++||||+++..++.+++.|...++.+..+||+++..+|..+++.|+. |
T Consensus 1 I~q~~~~v~~~e~K~~~L~~ll~~~--~~~k~iIF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~l~~f~~--~ 76 (162)
T d1fuka_ 1 IKQFYVNVEEEEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRS--G 76 (162)
T ss_dssp CEEEEEEEESGGGHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT--T
T ss_pred CEEEEEEeCCcHHHHHHHHHHHHhC--CCCcEEEEEEEEchHHHHHHHHhhcCceEEEeccCCchhhHHHHHHHHhh--c
Confidence 3567777777788999999998775 56799999999999999999999999999999999999999999999999 9
Q ss_pred CCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHhc
Q 047490 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRKN 321 (323)
Q Consensus 250 ~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~~ 321 (323)
+.++||||+++++|+|+ ++++||+||+|++...|.||+||+||.|+.|.+++++++.|...++.+++.++..
T Consensus 77 ~~~iLv~Tdv~~rGiDi~~v~~VI~~d~P~~~~~yihR~GR~gR~g~~g~~i~~~~~~d~~~~~~i~~~~~~~ 149 (162)
T d1fuka_ 77 SSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQ 149 (162)
T ss_dssp SCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCC
T ss_pred ccceeeccccccccccCCCceEEEEeccchhHHHHHhhccccccCCCccEEEEEcCHHHHHHHHHHHHHHcCc
Confidence 99999999999999999 9999999999999999999999999999999999999999999999999887653
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=5.4e-31 Score=200.05 Aligned_cols=152 Identities=28% Similarity=0.515 Sum_probs=142.4
Q ss_pred cccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhc
Q 047490 165 KKIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKF 244 (323)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f 244 (323)
....++.++|+.+...+.|+..|.+++... .+.++||||++.+.++.+++.|+..+..+..+||+++..+|..+++.|
T Consensus 3 ~tl~~i~q~~v~v~~~~~K~~~L~~ll~~~--~~~k~iiF~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f 80 (168)
T d2j0sa2 3 LTLEGIKQFFVAVEREEWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEF 80 (168)
T ss_dssp CSCTTEEEEEEEESSTTHHHHHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHH
T ss_pred CCCCCcEEEEEEecChHHHHHHHHHHHHhC--CCCceEEEeeeHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHH
Confidence 345678888988888888999999998775 567999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHh
Q 047490 245 KNEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRK 320 (323)
Q Consensus 245 ~~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~ 320 (323)
++ |+.++||||+++++|+|+ ++++||+||+|++...|.||+||+||.|+.|.+++++++.|...++.+++.++.
T Consensus 81 k~--g~~~iLv~Td~~~rGiDi~~v~~VIn~d~P~~~~~yihR~GR~gR~g~~G~~i~~~~~~d~~~~~~i~~~~~~ 155 (168)
T d2j0sa2 81 RS--GASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYST 155 (168)
T ss_dssp HH--TSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTC
T ss_pred hc--CCccEEeccchhcccccccCcceEEEecCCcCHHHHHhhhccccccCCCcEEEEEECHHHHHHHHHHHHHHcC
Confidence 99 999999999999999999 999999999999999999999999999999999999999999999999988754
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.97 E-value=3.2e-30 Score=193.94 Aligned_cols=146 Identities=28% Similarity=0.547 Sum_probs=136.3
Q ss_pred cceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccC
Q 047490 169 SARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNED 248 (323)
Q Consensus 169 ~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~ 248 (323)
++.+.|+.+. ..+|.+.|.+++.. .+.++||||++.++++.+++.|++.+..+..+||+++..+|..++++|+.
T Consensus 3 nI~~~~i~v~-~~~K~~~L~~ll~~---~~~k~IIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~-- 76 (155)
T d1hv8a2 3 NIEQSYVEVN-ENERFEALCRLLKN---KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQ-- 76 (155)
T ss_dssp SSEEEEEECC-GGGHHHHHHHHHCS---TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHT--
T ss_pred CeEEEEEEeC-hHHHHHHHHHHHcc---CCCCEEEEECchHHHHHHHhhhcccccccccccccchhhhhhhhhhhhhc--
Confidence 5667777775 57899999999975 45689999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHh
Q 047490 249 GDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRK 320 (323)
Q Consensus 249 g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~ 320 (323)
|+.++||||+++++|+|+ ++++||+||+|+|+..|.||+||+||.|+.|.+++++++.|...++.+++.++.
T Consensus 77 ~~~~ilv~T~~~~~Gid~~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~~~~~d~~~~~~i~~~~~~ 149 (155)
T d1hv8a2 77 KKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKL 149 (155)
T ss_dssp TSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTC
T ss_pred ccceeeeehhHHhhhhhhccCcEEEEecCCCCHHHHHHHHHhcCcCCCCceEEEEEchHHHHHHHHHHHHHCC
Confidence 999999999999999999 999999999999999999999999999999999999999999999999988765
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=3.7e-30 Score=196.73 Aligned_cols=151 Identities=29% Similarity=0.513 Sum_probs=139.8
Q ss_pred ccccceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhcc
Q 047490 166 KIASARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFK 245 (323)
Q Consensus 166 ~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~ 245 (323)
...++.++|..+. ..+|...|.+++... ++.++||||++.+.++.++..|...++.+..+||+++..+|..++++|+
T Consensus 3 tl~~i~q~yi~v~-~~~K~~~L~~ll~~~--~~~k~iVF~~~~~~~~~l~~~L~~~g~~~~~~h~~~~~~~r~~~~~~f~ 79 (171)
T d1s2ma2 3 TLKGITQYYAFVE-ERQKLHCLNTLFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFR 79 (171)
T ss_dssp BCTTEEEEEEECC-GGGHHHHHHHHHHHS--CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CccceEEEEEEcC-HHHHHHHHHHHHHhC--CCCceEEEEeeeehhhHhHHhhhcccccccccccccchhhhhhhhhhcc
Confidence 3456777777665 577999999999875 6689999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHHHHhc
Q 047490 246 NEDGDCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEAIRKN 321 (323)
Q Consensus 246 ~~~g~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~l~~~ 321 (323)
. |+.++||||+++++|+|+ ++++||+||+|+++..|.||+||+||.|+.|.+++|+++.|...++.+++.++..
T Consensus 80 ~--~~~~ilv~Td~~~~Gid~~~v~~VI~~d~p~~~~~y~qr~GR~gR~g~~g~~i~~v~~~e~~~~~~i~~~l~~~ 154 (171)
T d1s2ma2 80 Q--GKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTE 154 (171)
T ss_dssp T--TSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCC
T ss_pred c--CccccccchhHhhhccccceeEEEEecCCcchHHHHHHHhhhcccCCCccEEEEEeCHHHHHHHHHHHHHHCCC
Confidence 9 999999999999999999 9999999999999999999999999999999999999999999999999988754
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=8.5e-29 Score=188.14 Aligned_cols=146 Identities=27% Similarity=0.513 Sum_probs=132.8
Q ss_pred ceeeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCC
Q 047490 170 ARHDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDG 249 (323)
Q Consensus 170 ~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g 249 (323)
+.++|+.+. .++|.+.|.+++... .+.++||||++++.++.+++.|+..++.+..+||+|++.+|..++++|+. |
T Consensus 2 l~q~~v~~~-~~~K~~~L~~ll~~~--~~~k~iIF~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~l~~F~~--g 76 (168)
T d1t5ia_ 2 LQQYYVKLK-DNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKD--F 76 (168)
T ss_dssp CEEEEEECC-GGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT--T
T ss_pred cEEEEEEeC-hHHHHHHHHHHHHhC--CCCeEEEEEeeeecchhhhhhhccccccccccccccchhhhhhhhhhhcc--c
Confidence 456777776 578999999999775 56799999999999999999999999999999999999999999999999 9
Q ss_pred CCCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCC-cHHHHHHHHHHHHh
Q 047490 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKK-DVLLADRIEEAIRK 320 (323)
Q Consensus 250 ~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~-~~~~~~~i~~~l~~ 320 (323)
+.++||||+++++|+|+ .+++||+|++|++...|.||+||+||.|+.|.+++++++. +...+..+++.++.
T Consensus 77 ~~~iLv~T~~~~~Gid~~~~~~vi~~~~p~~~~~yiqr~GR~gR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~ 149 (168)
T d1t5ia_ 77 QRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEV 149 (168)
T ss_dssp SCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCC
T ss_pred cceeeeccccccchhhcccchhhhhhhcccchhhHhhhhhhcccCCCccEEEEEECchHHHHHHHHHHHHHcC
Confidence 99999999999999999 9999999999999999999999999999999999999875 55677777776653
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=3.8e-28 Score=189.11 Aligned_cols=132 Identities=23% Similarity=0.399 Sum_probs=123.4
Q ss_pred CChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEec
Q 047490 179 GSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258 (323)
Q Consensus 179 ~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~ 258 (323)
...+|++.|.+++... .+.++||||++.+.++.++..|+..++.+..+||+++..+|..+++.|+. |+.+|||||+
T Consensus 13 ~~~~k~~~L~~~l~~~--~~~~~IIF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~--g~~~ilvaTd 88 (200)
T d1oywa3 13 EKFKPLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQR--DDLQIVVATV 88 (200)
T ss_dssp ECSSHHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT--TSCSEEEECT
T ss_pred cCCcHHHHHHHHHHhc--CCCCEEEEEeeehhhHHhhhhhccCCceeEEecCCCcHHHHHHHHHHHhc--ccceEEEecc
Confidence 3456889999988764 56799999999999999999999999999999999999999999999999 9999999999
Q ss_pred ccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHH
Q 047490 259 LAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRI 314 (323)
Q Consensus 259 ~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i 314 (323)
++++|+|+ ++++||+|++|.|..+|.||+||+||.|+.|.+++++++.|...++++
T Consensus 89 ~~~~GiD~p~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~ai~~~~~~d~~~l~~~ 145 (200)
T d1oywa3 89 AFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRC 145 (200)
T ss_dssp TSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred hhhhccCCCCCCEEEECCCccchHHHHHHhhhhhcCCCCceEEEecCHHHHHHHHhh
Confidence 99999999 999999999999999999999999999999999999999887777654
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=99.95 E-value=3.6e-28 Score=204.40 Aligned_cols=244 Identities=13% Similarity=0.138 Sum_probs=161.6
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEE
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYL 95 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~v 95 (323)
++.++||++||++|+.|+.+.++++..... ... ..........|+++||+.+...... ...+.+++++
T Consensus 37 ~~~~~lvi~Ptr~La~q~~~~l~~~~~~~~----~~~-------~~~~~~~~~~i~~~t~~~l~~~~~~-~~~~~~~~~v 104 (305)
T d2bmfa2 37 RGLRTLILAPTRVVAAEMEEALRGLPIRYQ----TPA-------IRAEHTGREIVDLMCHATFTMRLLS-PIRVPNYNLI 104 (305)
T ss_dssp HTCCEEEEESSHHHHHHHHHHTTTSCCBCC----C---------------CCCSEEEEEHHHHHHHHTS-SSCCCCCSEE
T ss_pred cCCEEEEEccHHHHHHHHHHHHhcCCccee----eeE-------EeecccCccccccCCcHHHHHHHhc-CccccceeEE
Confidence 367999999999999999998877643211 110 0111223457999999988776554 4457889999
Q ss_pred eecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeeeccccccccccceeeEE
Q 047490 96 VLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLRTSTLHKKIASARHDFI 175 (323)
Q Consensus 96 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (323)
|+||+|++..+++ .....+..+... .+.+.+++|||++....... . ....+.....
T Consensus 105 ViDE~H~~~~~~~--~~~~~l~~~~~~------~~~~~v~~SAT~~~~~~~~~----~------------~~~~~~~~~~ 160 (305)
T d2bmfa2 105 IMDEAHFTDPASI--AARGYISTRVEM------GEAAGIFMTATPPGSRDPFP----Q------------SNAPIMDEER 160 (305)
T ss_dssp EEESTTCCSHHHH--HHHHHHHHHHHH------TSCEEEEECSSCTTCCCSSC----C------------CSSCEEEEEC
T ss_pred EeeeeeecchhhH--HHHHHHHHhhcc------ccceEEEeecCCCcceeeec----c------------cCCcceEEEE
Confidence 9999998755331 122222222221 24489999999875432100 0 0000000000
Q ss_pred eccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEE
Q 047490 176 KLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV 255 (323)
Q Consensus 176 ~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv 255 (323)
.... ..+...+ ..+. +.+++++|||++.+.++.+++.|++.+..+..+||++.+. ....|++ |..+++|
T Consensus 161 ~~~~-~~~~~~~-~~~~---~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~----~~~~~~~--~~~~~lv 229 (305)
T d2bmfa2 161 EIPE-RSWNSGH-EWVT---DFKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDS----EYIKTRT--NDWDFVV 229 (305)
T ss_dssp CCCC-SCCSSCC-HHHH---SSCSCEEEECSCHHHHHHHHHHHHHHTCCCEECCTTCHHH----HGGGGGT--SCCSEEE
T ss_pred eccH-HHHHHHH-HHHH---hhCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeCCcChHH----HHhhhhc--cchhhhh
Confidence 0110 0000011 1111 2567999999999999999999999999999999998644 3457787 9999999
Q ss_pred EecccccccCCCCCEEEEcC----------C----------CCCchhhhhhhcccccCCCcceEEEEeeCC
Q 047490 256 CTDLAARGLDLDVDHVIMFD----------F----------PLNSIDYLHRTGRTARMGAKGKVTSLVAKK 306 (323)
Q Consensus 256 ~t~~~~~Gid~~~~~vi~~~----------~----------p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~ 306 (323)
+|++++.|+|++++.||.++ . |.|..+|.||+||+||.|+.+....++...
T Consensus 230 aT~~~~~G~~~~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR~GR~~~~~~~~~~~~~~ 300 (305)
T d2bmfa2 230 TTDISEMGANFKAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYIYMGE 300 (305)
T ss_dssp ECGGGGTTCCCCCSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCSSSCCCEEEEECSC
T ss_pred hhHHHHhcCCCCccEEEEcCCceeeeEecCCCCceEEeccccCCHHHHhhhhcCcCcCCCCceEEEEECCC
Confidence 99999999999888877443 2 457889999999999999888777776643
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=99.94 E-value=1.8e-26 Score=172.94 Aligned_cols=136 Identities=24% Similarity=0.360 Sum_probs=118.4
Q ss_pred CChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEec
Q 047490 179 GSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTD 258 (323)
Q Consensus 179 ~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~ 258 (323)
+....++.|++.+.+...++.++||||++.++|+.+++.|+..|+.+..+||+|+..+|.+++++|++ |+++|||||+
T Consensus 12 p~~~qv~dll~~i~~~~~~g~r~lvfc~t~~~~~~l~~~L~~~Gi~a~~~Hg~~~~~eR~~~l~~F~~--G~~~vLVaT~ 89 (174)
T d1c4oa2 12 PTENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRL--GHYDCLVGIN 89 (174)
T ss_dssp CSTTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHT--TSCSEEEESC
T ss_pred eCCCCHHHHHHHHHHHHhcCCcEEEEEcchhHHHHHHHHHHhcCCceEEEecccchHHHHHHHHHHHC--CCeEEEEeee
Confidence 34556677777776666678999999999999999999999999999999999999999999999999 9999999999
Q ss_pred ccccccCC-CCCEEEEcCCCC-----CchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHH
Q 047490 259 LAARGLDL-DVDHVIMFDFPL-----NSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317 (323)
Q Consensus 259 ~~~~Gid~-~~~~vi~~~~p~-----s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~ 317 (323)
++++|+|+ ++++||++++|. |...|.|++||+||.|+ |.++++.........+.+++.
T Consensus 90 v~~~GiDip~V~~Vi~~~~~~~~~~~~~~~~iq~~GR~gR~~~-g~~~~~~~~~~~~~~~~i~et 153 (174)
T d1c4oa2 90 LLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAR-GEVWLYADRVSEAMQRAIEET 153 (174)
T ss_dssp CCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTT-CEEEEECSSCCHHHHHHHHHH
T ss_pred eeeeeccCCCCcEEEEeccccccccchhHHHHHHhhhhhhcCC-CeeEEeecCCCHHHHHHHHHH
Confidence 99999999 999999999876 44779999999999864 787777777666655555553
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=99.93 E-value=1.4e-25 Score=170.88 Aligned_cols=126 Identities=21% Similarity=0.376 Sum_probs=109.4
Q ss_pred ChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc
Q 047490 180 SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL 259 (323)
Q Consensus 180 ~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~ 259 (323)
...+++.++..+.+....+.++||||++..+++.++..|++.|+.+..+||+|++.+|.+++++|++ |+++|||||++
T Consensus 13 ~~~qvd~ll~~i~~~~~~~~~~iif~~~~~~~~~~~~~l~~~g~~~~~~hg~~~~~eR~~~l~~Fr~--g~~~vLVaTdv 90 (181)
T d1t5la2 13 TKGQIDDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRL--GKYDVLVGINL 90 (181)
T ss_dssp STTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHH--TSCSEEEESCC
T ss_pred CCCcHHHHHHHHHHHHhcCCeEEEEeehhhhhHHHHHHHHhCCcceeEecCCccHHHHHHHHHHHHC--CCCCEEEehhH
Confidence 4556666776666655567899999999999999999999999999999999999999999999999 99999999999
Q ss_pred cccccCC-CCCEEEEcCCCC-----CchhhhhhhcccccCCCcceEEEEeeCCcH
Q 047490 260 AARGLDL-DVDHVIMFDFPL-----NSIDYLHRTGRTARMGAKGKVTSLVAKKDV 308 (323)
Q Consensus 260 ~~~Gid~-~~~~vi~~~~p~-----s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~ 308 (323)
+++|+|+ ++++||+||+|. |...|.||+||+||.|+ |.+..+....+.
T Consensus 91 ~~rGiDip~v~~VI~~d~p~~~~~~s~~~yi~R~GRagR~g~-~~~~~~~~~~~~ 144 (181)
T d1t5la2 91 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAN-GHVIMYADTITK 144 (181)
T ss_dssp CSSSCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTT-CEEEEECSSCCH
T ss_pred HHccCCCCCCCEEEEecCCcccccccHHHHHHHHHhhccccC-ceeEeecchhhH
Confidence 9999999 999999999995 68899999999999975 444444444443
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=7.3e-23 Score=161.94 Aligned_cols=145 Identities=27% Similarity=0.410 Sum_probs=126.1
Q ss_pred hhhhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcC
Q 047490 6 EAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDG 85 (323)
Q Consensus 6 ~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~ 85 (323)
+.+.......++++++|++||++|+.|+.+.++++....++++..+.|+.........+..+++|+|+||+++.+++...
T Consensus 74 Pil~~l~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~g~~~~~~~~~~l~~~~~Ilv~TPgrl~~~~~~~ 153 (222)
T d2j0sa1 74 SVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRR 153 (222)
T ss_dssp HHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTT
T ss_pred cccccccccccCceeEEecchHHHHHHHHHHHHHHhCccceeEEEEeecccchhhHHHhccCCeEEeCCCCcHHhccccc
Confidence 33344445567899999999999999999999999988899999999998877777777777899999999999999998
Q ss_pred CCCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceee
Q 047490 86 NMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHL 158 (323)
Q Consensus 86 ~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~ 158 (323)
...+++++++|+||||++++.+|.+.+..++..++... |++++|||++++..++...++.++..+
T Consensus 154 ~~~~~~l~~lVlDEaD~ll~~~f~~~i~~I~~~l~~~~--------Q~ilfSAT~~~~v~~l~~~~l~~Pv~I 218 (222)
T d2j0sa1 154 SLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT--------QVVLISATLPHEILEMTNKFMTDPIRI 218 (222)
T ss_dssp SSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTC--------EEEEEESCCCHHHHTTGGGTCSSCEEE
T ss_pred ccccccceeeeecchhHhhhcCcHHHHHHHHHhCCCCC--------EEEEEEEeCCHHHHHHHHHHCCCCEEE
Confidence 89999999999999999999999999999998886543 999999999998888777777666543
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.87 E-value=5.7e-22 Score=156.02 Aligned_cols=142 Identities=32% Similarity=0.544 Sum_probs=122.5
Q ss_pred hccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCC
Q 047490 9 LGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMV 88 (323)
Q Consensus 9 ~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~ 88 (323)
.......++++++|++||++|+.|+.+.++.+....+.++..++|+.....+.+.+. +++|+|+||+++.+++.++...
T Consensus 64 ~~~~~~~~~~~~lil~pt~~l~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~-~~~IlV~TP~~l~~~l~~~~~~ 142 (208)
T d1hv8a1 64 IELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLN 142 (208)
T ss_dssp HHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSC
T ss_pred ccccccccCcceEEEeeccccchhhhhhhhhhcccCCeEEEEeeCCCChHHHHHhcC-CCCEEEEChHHHHHHHHcCCCC
Confidence 344566788999999999999999999999999888899999999877665554443 5899999999999999998888
Q ss_pred CCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceeee
Q 047490 89 YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHLR 159 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~~ 159 (323)
+++++++|+||+|.+.+.++...+..++..++.. .|++++|||+++.+.++..+++.++..+.
T Consensus 143 ~~~l~~lViDEad~l~~~~~~~~i~~I~~~~~~~--------~Q~i~~SAT~~~~v~~~~~~~l~~~~~I~ 205 (208)
T d1hv8a1 143 LKNVKYFILDEADEMLNMGFIKDVEKILNACNKD--------KRILLFSATMPREILNLAKKYMGDYSFIK 205 (208)
T ss_dssp TTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSS--------CEEEEECSSCCHHHHHHHHHHCCSEEEEE
T ss_pred cccCcEEEEEChHHhhcCCChHHHHHHHHhCCCC--------CeEEEEEccCCHHHHHHHHHHCCCCeEEE
Confidence 9999999999999999999999999999887643 39999999999999988888887765543
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=3.7e-21 Score=151.98 Aligned_cols=144 Identities=28% Similarity=0.436 Sum_probs=122.3
Q ss_pred hhhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccc-cCCCCCEEEeChHHHHHHHHcC
Q 047490 7 AMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS-LNNPIDMVVGTPGRILQHIEDG 85 (323)
Q Consensus 7 ~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Iii~Tp~~l~~~~~~~ 85 (323)
.+.....+..++++||++||++|+.|+.+.++.+....++....+.++......... ..++++|+|+||+++.+++.++
T Consensus 70 ~l~~i~~~~~~~~alil~Pt~eL~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvV~TP~rl~~~l~~~ 149 (218)
T d2g9na1 70 ILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRR 149 (218)
T ss_dssp HHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHHTTTTCCEEEECC--CCCSTTTSSSSCCCSEEEECHHHHHHHHHTT
T ss_pred hhheecccccCccEEEEcccchhhhhHHHHHhhhccccceeEEeeecccchhHHHHHHhcCCCEEEEeCChhHHHHHhcC
Confidence 333444567789999999999999999999999999988888888887766555433 4567899999999999999998
Q ss_pred CCCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceee
Q 047490 86 NMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHL 158 (323)
Q Consensus 86 ~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~ 158 (323)
...+++++++|+||||.+.+.+|...+..++..++.. .|++++|||+++++..+.+.++.++..+
T Consensus 150 ~~~~~~l~~lVlDEaD~ll~~~f~~~~~~Il~~~~~~--------~Q~il~SAT~~~~v~~~~~~~l~~pv~i 214 (218)
T d2g9na1 150 YLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSN--------TQVVLLSATMPSDVLEVTKKFMRDPIRI 214 (218)
T ss_dssp SSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTT--------CEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred CcccccceEEEeeecchhhcCchHHHHHHHHHhCCCC--------CeEEEEEecCCHHHHHHHHHHCCCCEEE
Confidence 8899999999999999999999999999999988653 3999999999999999999888776544
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.86 E-value=2.1e-22 Score=146.22 Aligned_cols=100 Identities=26% Similarity=0.387 Sum_probs=90.2
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCCCCCEEEEc--
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMF-- 274 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~~~~~vi~~-- 274 (323)
+++++||||++++.|+.+++.|+..++.+..+|++|+. ++|++ |+.++||||+++++|+|.+++.||++
T Consensus 34 ~~~k~IVFc~t~~~ae~la~~L~~~G~~~~~~H~~~~~-------~~~~~--~~~~vlvaTd~~~~GiD~~v~~Vi~~~~ 104 (138)
T d1jr6a_ 34 KGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDV-------SVIPT--NGDVVVVATDALMTGFTGDFDSVIDCNT 104 (138)
T ss_dssp TTSCEEEECSCHHHHHHHHHHHHHHTCEEEEECTTCCS-------CCCTT--SSCEEEEESSSSCSSSCCCBSEEEECSE
T ss_pred CCCCEEEEeCcHHHHHHHHHHHhccccchhhhhccchh-------hhhhh--hhcceeehhHHHHhccccccceEEEEEe
Confidence 56799999999999999999999999999999999984 45777 99999999999999999889999885
Q ss_pred --CCCCCchhhhhhhcccccCCCcceEEEEeeCCc
Q 047490 275 --DFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKD 307 (323)
Q Consensus 275 --~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~ 307 (323)
++|.+...|.||+||+|| |++|. ++++++.|
T Consensus 105 ~~~~P~~~~~y~qr~GR~gR-g~~G~-~~~i~~~e 137 (138)
T d1jr6a_ 105 SDGKPQDAVSRTQRRGRTGR-GKPGI-YRFVAPGE 137 (138)
T ss_dssp ETTEECCHHHHHHHHTTBCS-SSCEE-EEECCSSC
T ss_pred cCCCCCCHHHHHhHhccccC-CCCcE-EEEEcCCC
Confidence 469999999999999999 99995 77887765
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=3.3e-21 Score=151.21 Aligned_cols=145 Identities=29% Similarity=0.430 Sum_probs=123.9
Q ss_pred hhhhhccccCCCCccEEEEcCCHHHHHHHHHHHHHhcccc-ceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHH
Q 047490 5 DEAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHA-RFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIE 83 (323)
Q Consensus 5 ~~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~ 83 (323)
.+.+.....+.++++++|++||++|+.|+.+.++.+.... +.......|+.........+..+++|+|+||+++.+++.
T Consensus 59 lP~l~~~~~~~~~~~~lil~pt~el~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ivv~TPgrl~~~~~ 138 (206)
T d1veca_ 59 IPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIK 138 (206)
T ss_dssp HHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHH
T ss_pred cchhhcccccccCcceEEEeecchhhHHHHHHHHHHhhcccCcccccccCCccHHHHHHHHHhccCeEEeCCcccccccc
Confidence 3455555667788999999999999999999999886543 456777777766666666677889999999999999999
Q ss_pred cCCCCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCcee
Q 047490 84 DGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAH 157 (323)
Q Consensus 84 ~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~ 157 (323)
.+...+++++++|+||||.|++.+|...+..++..++.. .|++++|||+++.+.++.+.++..+..
T Consensus 139 ~~~~~~~~l~~lVlDEaD~ll~~~f~~~i~~I~~~~~~~--------~Q~~l~SAT~~~~v~~l~~~~l~~P~~ 204 (206)
T d1veca_ 139 KGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKN--------RQILLYSATFPLSVQKFMNSHLEKPYE 204 (206)
T ss_dssp TTCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTT--------CEEEEEESCCCHHHHHHHHHHCSSCEE
T ss_pred chhccccccceEEEeccccccccchHHHHHHHHHhCCCC--------CEEEEEEecCCHHHHHHHHHHCCCCEE
Confidence 988899999999999999999999999999999988654 399999999999999999888877654
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.85 E-value=1.4e-20 Score=147.96 Aligned_cols=143 Identities=30% Similarity=0.482 Sum_probs=117.3
Q ss_pred hhhhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcC
Q 047490 6 EAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDG 85 (323)
Q Consensus 6 ~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~ 85 (323)
+.+.......++++++|++||++|+.|+...+..+.....+......++.....+..... +++|+|+||+++..++..+
T Consensus 67 p~i~~l~~~~~~~~~lil~pt~el~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~IvI~TP~~l~~~~~~~ 145 (212)
T d1qdea_ 67 AALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRR 145 (212)
T ss_dssp HHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CT-TCSEEEECHHHHHHHHHTT
T ss_pred hhHhhhhccCCCcceEEEcccHHHhhhhhhhhcccccccccceeeEeeccchhHHHHHhc-CCcEEEECCCccccccccC
Confidence 344444556788999999999999999999999998888888888888776666555444 5799999999999999999
Q ss_pred CCCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCcee
Q 047490 86 NMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAH 157 (323)
Q Consensus 86 ~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~ 157 (323)
...+++++++|+||||.+.+.+|.+.+..++..++.. .|++++|||+++++..+..+++.++..
T Consensus 146 ~~~l~~l~~lVlDEad~lld~~f~~~v~~I~~~~~~~--------~Q~vl~SAT~~~~v~~l~~~~l~~Pv~ 209 (212)
T d1qdea_ 146 RFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPT--------TQVVLLSATMPNDVLEVTTKFMRNPVR 209 (212)
T ss_dssp SSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTT--------CEEEEEESSCCHHHHHHHHHHCSSCEE
T ss_pred ceecCcceEEeehhhhhhcccchHHHHHHHHHhCCCC--------CeEEEEEeeCCHHHHHHHHHHCCCCEE
Confidence 8899999999999999999999999999999988654 399999999999999999998887654
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.85 E-value=2.7e-21 Score=160.16 Aligned_cols=127 Identities=27% Similarity=0.456 Sum_probs=108.9
Q ss_pred hhHHHHHHHHhccCC--CCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecC--------CCCHHHHHHHHHhccccCCC
Q 047490 181 ENKLEALLQVLEPSL--SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHG--------EVPAQERVENLNKFKNEDGD 250 (323)
Q Consensus 181 ~~k~~~l~~~l~~~~--~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~--------~~~~~~r~~~~~~f~~~~g~ 250 (323)
..|.+.+.+++...+ ..+.++||||++..+++.+++.|...++++..+|| +++..+|..+++.|++ |+
T Consensus 142 ~pK~~~l~~~l~~~~~~~~~~k~iiF~~~~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F~~--g~ 219 (286)
T d1wp9a2 142 HPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFAR--GE 219 (286)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHH--TS
T ss_pred CcHHHHHHHHHHHHHHhCCCCcEEEEeCcHHhHHHHHHHHHHcCCceEEeeccccccccchhchHHHHHHHHHHHc--CC
Confidence 457777777665432 35679999999999999999999999888888766 5666789999999999 99
Q ss_pred CCEEEEecccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHH
Q 047490 251 CPTLVCTDLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLL 310 (323)
Q Consensus 251 ~~ilv~t~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~ 310 (323)
++|||||+++++|+|+ ++++||+||+|+|+..|.||+||+||. ..|.++.++++.....
T Consensus 220 ~~vLv~T~~~~~Gld~~~~~~Vi~~d~~~~~~~~~Qr~GR~gR~-~~~~~~~l~~~~~~ee 279 (286)
T d1wp9a2 220 FNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRH-MPGRVIILMAKGTRDE 279 (286)
T ss_dssp CSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSC-CCSEEEEEEETTSHHH
T ss_pred CcEEEEccceeccccCCCCCEEEEeCCCCCHHHHHHHHHhCCCC-CCCEEEEEEeCCCHHH
Confidence 9999999999999999 999999999999999999999999996 5788999999876553
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.84 E-value=1.8e-21 Score=151.55 Aligned_cols=111 Identities=23% Similarity=0.337 Sum_probs=94.3
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhC------------------------------CCeeEEecCCCCHHHHHHHHHhccc
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNEN------------------------------QISTVNYHGEVPAQERVENLNKFKN 246 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~------------------------------~~~~~~~~~~~~~~~r~~~~~~f~~ 246 (323)
+++++||||++++.|+.++..|.+. ..+++++||+|++.+|..+++.|++
T Consensus 39 ~~~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~GIa~hh~~l~~~~r~~ie~~f~~ 118 (201)
T d2p6ra4 39 ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRR 118 (201)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHT
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhhhHHHHHHHhccHHHHHHHhhhhhHHHHHHHHhC
Confidence 5689999999999999888777541 1247899999999999999999999
Q ss_pred cCCCCCEEEEecccccccCCCCCEEEE--------cCCCCCchhhhhhhcccccCCC--cceEEEEeeCCcHH
Q 047490 247 EDGDCPTLVCTDLAARGLDLDVDHVIM--------FDFPLNSIDYLHRTGRTARMGA--KGKVTSLVAKKDVL 309 (323)
Q Consensus 247 ~~g~~~ilv~t~~~~~Gid~~~~~vi~--------~~~p~s~~~~~Q~~GR~~R~~~--~g~~~~~~~~~~~~ 309 (323)
|.++|||||+++++|+|+++..||+ ++.|.+..+|.|++||+||.|. .|.+++++...+..
T Consensus 119 --g~i~vlvaT~~l~~Gin~p~~~vvi~~~~~~d~~~~~~~~~~~~q~~GRAGR~g~~~~G~~~l~~~~~~~~ 189 (201)
T d2p6ra4 119 --GNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDRE 189 (201)
T ss_dssp --TSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHH
T ss_pred --CCceEEEechHHHhhcCCCCceEEEecceeccCCcCCCCHHHHHHHhcccCCCCCCCeeEEEEEeCCCChH
Confidence 9999999999999999996655555 4567799999999999999984 78888887776553
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Probab=99.84 E-value=1.6e-20 Score=150.38 Aligned_cols=141 Identities=35% Similarity=0.533 Sum_probs=123.6
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCc
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIK 93 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~ 93 (323)
...+++++||+||++|+.|+.+.+..+....++++..+.|+.....+.+....+++|+|+||+++.+++..+...+++++
T Consensus 95 ~~~~~~alil~pt~el~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivV~TP~~l~~~~~~~~~~l~~v~ 174 (238)
T d1wrba1 95 KTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCK 174 (238)
T ss_dssp CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred CCCCceEEEeccchhhhcchheeeeecccCCCcEEEEEeccchhhHHHhhcccCCceeecCHHHHHhHHccCceeccccc
Confidence 45578999999999999999999999999889999999999888777777778899999999999999999888899999
Q ss_pred EEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceee
Q 047490 94 YLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHL 158 (323)
Q Consensus 94 ~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~ 158 (323)
++|+||+|.+++.+|.+++..++..+... ...+.|++++|||+++.+......++.++..+
T Consensus 175 ~lViDEaD~ll~~~f~~~i~~Il~~~~~~----~~~~~Q~il~SAT~~~~v~~l~~~~~~~p~~i 235 (238)
T d1wrba1 175 YIVLDEADRMLDMGFEPQIRKIIEESNMP----SGINRQTLMFSATFPKEIQKLAADFLYNYIFM 235 (238)
T ss_dssp EEEEETHHHHHHTTCHHHHHHHHHSSCCC----CGGGCEEEEEESSCCHHHHHHHHHHCSSCEEE
T ss_pred eeeeehhhhhhhhccHHHHHHHHHHhcCC----CCCCCEEEEEeeeCCHHHHHHHHHHCCCCEEE
Confidence 99999999999999999999998765432 12345999999999999999988888776544
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.82 E-value=2.3e-21 Score=149.80 Aligned_cols=135 Identities=14% Similarity=0.260 Sum_probs=110.3
Q ss_pred hhHHHHHHHHhccCCCCCCeEEEEecCcccHHH--------HHHHHhhC---CCeeEEecCCCCHHHHHHHHHhccccCC
Q 047490 181 ENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRA--------VDHFLNEN---QISTVNYHGEVPAQERVENLNKFKNEDG 249 (323)
Q Consensus 181 ~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~--------l~~~l~~~---~~~~~~~~~~~~~~~r~~~~~~f~~~~g 249 (323)
.++.+.+.+.+....+.++++.+.||..+..+. ..+.|.+. +..+..+||.|++++++.++.+|++ |
T Consensus 12 ~~~~~~v~~~I~~el~~g~QvyvVcP~Ieese~~~~~~~~e~~~~l~~~~~p~~~v~~lHG~m~~~eke~~m~~F~~--g 89 (206)
T d1gm5a4 12 MDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAE--G 89 (206)
T ss_dssp SSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTT--T
T ss_pred cccHHHHHHHHHHHHHcCCCEEEEEeeecccccccchhhHHHHHHHHHhcCCCCeEEEEeecccHHHHHHHHHHHHC--C
Confidence 345677777777777889999999998765443 33444332 5678889999999999999999999 9
Q ss_pred CCCEEEEecccccccCC-CCCEEEEcCCCC-CchhhhhhhcccccCCCcceEEEEeeCCcHHHHHHHHHH
Q 047490 250 DCPTLVCTDLAARGLDL-DVDHVIMFDFPL-NSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADRIEEA 317 (323)
Q Consensus 250 ~~~ilv~t~~~~~Gid~-~~~~vi~~~~p~-s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~i~~~ 317 (323)
+++|||||+++++|||+ +++++|+++.|. ...++.|..||+||.|..|.|++++.+.+....++++..
T Consensus 90 ~~~iLVaTtViE~GIDip~a~~iii~~a~~fglsqlhQlrGRvGR~~~~~~~~l~~~~~~~~~~~rl~~~ 159 (206)
T d1gm5a4 90 RYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEEAMERLRFF 159 (206)
T ss_dssp SSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHHHHHHHHHH
T ss_pred CEEEEEEehhhhccccccCCcEEEEEccCCccHHHHHhhhhheeeccccceeEeeeccccccchhhhhhc
Confidence 99999999999999999 999999999987 799999999999999999999999998777777776544
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=4.4e-20 Score=144.78 Aligned_cols=144 Identities=25% Similarity=0.380 Sum_probs=117.8
Q ss_pred hhhhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccc-eeEEEeecCccCCcccccc-CCCCCEEEeChHHHHHHHH
Q 047490 6 EAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHAR-FRSTMVSGGGRLRPQEDSL-NNPIDMVVGTPGRILQHIE 83 (323)
Q Consensus 6 ~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~Iii~Tp~~l~~~~~ 83 (323)
+.+.......+++++++++||++|+.|+.+.++.+....+ ++...+.|+.....+...+ ..+++|+|+||+++.+++.
T Consensus 58 p~l~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ilI~TP~rl~~~~~ 137 (207)
T d1t6na_ 58 ATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALAR 137 (207)
T ss_dssp HHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHH
T ss_pred ceeeeecccCCCceEEEEeccchhhHHHHHHHHHHHhhCCCceeEEEeccccHHHHHHHHHhcCCCEEEeCcchhhhhcc
Confidence 3344445567789999999999999999999999987653 5677777877665554443 4568999999999999999
Q ss_pred cCCCCCCCCcEEeecchhhhhcC-CChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCcee
Q 047490 84 DGNMVYGDIKYLVLDEADTMFDR-GFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAH 157 (323)
Q Consensus 84 ~~~~~~~~~~~vIiDE~h~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~ 157 (323)
.....+++++++|+||||.+++. ++...+..++..++.. .|++++|||+++.+.++...++.++..
T Consensus 138 ~~~~~l~~l~~lVlDEaD~ll~~~~~~~~i~~I~~~~~~~--------~Q~il~SAT~~~~v~~l~~~~l~~P~~ 204 (207)
T d1t6na_ 138 NKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHE--------KQVMMFSATLSKEIRPVCRKFMQDPME 204 (207)
T ss_dssp TTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSS--------SEEEEEESCCCTTTHHHHHTTCSSCEE
T ss_pred CCceeccccceeehhhhhhhhhcCCcHHHHHHHHHhCCCC--------CEEEEEeeeCCHHHHHHHHHHCCCCEE
Confidence 88888999999999999999974 6778888888877653 399999999999999888888776644
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.81 E-value=1.2e-19 Score=142.50 Aligned_cols=145 Identities=28% Similarity=0.428 Sum_probs=129.8
Q ss_pred hhhhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcC
Q 047490 6 EAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDG 85 (323)
Q Consensus 6 ~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~ 85 (323)
+.+.....+.+++++++++|+.+++.|....+..+....++++...+|+.........+..+++|+|+||+++.+++...
T Consensus 58 p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~~ 137 (206)
T d1s2ma1 58 PTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRK 137 (206)
T ss_dssp HHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTT
T ss_pred ccccccccccccccceeeccchhhhhhhhhhhhhcccccCeeEEeecCccchhhHHHHhcccceEEEECCcccccccccc
Confidence 44555556777899999999999999999999999999999999999998888777778888999999999999999998
Q ss_pred CCCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceee
Q 047490 86 NMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHL 158 (323)
Q Consensus 86 ~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~ 158 (323)
...+++++++|+||||.+.+.+|.+.+..++..++..+ |++++|||+++++..+..+++.++..+
T Consensus 138 ~~~l~~l~~lV~DEaD~l~~~~f~~~v~~I~~~l~~~~--------Q~il~SATl~~~v~~~~~~~l~~P~~I 202 (206)
T d1s2ma1 138 VADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTH--------QSLLFSATFPLTVKEFMVKHLHKPYEI 202 (206)
T ss_dssp CSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSC--------EEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred eeecccceEEEeechhhhhhhhhHHHHHHHHHhCCCCC--------EEEEEEEeCCHHHHHHHHHHCCCCEEE
Confidence 88999999999999999999889999999999887543 999999999999999999988876554
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=6.6e-19 Score=134.45 Aligned_cols=129 Identities=18% Similarity=0.259 Sum_probs=111.9
Q ss_pred HHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC--CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEeccccccc
Q 047490 187 LLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN--QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGL 264 (323)
Q Consensus 187 l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~--~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gi 264 (323)
+.+.+....+.++++.+.||..+..+.+++.+++. +..+..+||.|+++++++++.+|.+ |+.+|||||++++.|+
T Consensus 20 i~~~I~~El~rGgQvy~V~p~I~~~e~~~~~l~~~~p~~~i~~lHGkm~~~eke~im~~F~~--g~~~ILv~TtvIEvGi 97 (211)
T d2eyqa5 20 VREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH--QRFNVLVCTTIIETGI 97 (211)
T ss_dssp HHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHT--TSCCEEEESSTTGGGS
T ss_pred HHHHHHHHHHcCCeEEEEEcCccchhhHHHHHHHhCCceEEEEEEeccCHHHHHHHHHHHHc--CCcceEEEehhhhhcc
Confidence 55555555578999999999999999999988874 7789999999999999999999999 9999999999999999
Q ss_pred CC-CCCEEEEcCCCC-CchhhhhhhcccccCCCcceEEEEeeCC---cHHHHHHHHHH
Q 047490 265 DL-DVDHVIMFDFPL-NSIDYLHRTGRTARMGAKGKVTSLVAKK---DVLLADRIEEA 317 (323)
Q Consensus 265 d~-~~~~vi~~~~p~-s~~~~~Q~~GR~~R~~~~g~~~~~~~~~---~~~~~~~i~~~ 317 (323)
|+ +++++|+.+.+. ...++.|..||+||.+..|.|+.++... .....++++..
T Consensus 98 DvpnA~~iiI~~a~rfGLaQLhQLRGRVGR~~~~s~c~l~~~~~~~~~~~a~~RL~~l 155 (211)
T d2eyqa5 98 DIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAI 155 (211)
T ss_dssp CCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGGGSCHHHHHHHHHH
T ss_pred CCCCCcEEEEecchhccccccccccceeeecCccceEEEEecCCcCCCchHHHHHHHH
Confidence 99 999999998875 8999999999999999999999999753 33444555443
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.79 E-value=3.3e-20 Score=145.18 Aligned_cols=117 Identities=21% Similarity=0.370 Sum_probs=101.7
Q ss_pred ChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc
Q 047490 180 SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL 259 (323)
Q Consensus 180 ~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~ 259 (323)
...|++.+.+++... .+.++||||++...++.+++.|. +..+||+++..+|+.++++|++ |+.+|||+|++
T Consensus 77 ~~~K~~~l~~ll~~~--~~~k~lvf~~~~~~~~~l~~~l~-----~~~i~g~~~~~~R~~~l~~F~~--~~~~vLv~~~~ 147 (200)
T d2fwra1 77 SKNKIRKLREILERH--RKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRT--GRFRAIVSSQV 147 (200)
T ss_dssp CSHHHHHHHHHHHHT--SSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHH--SSCSBCBCSSC
T ss_pred cHHHHHHHHHHHHhC--CCCcEEEEeCcHHHHHHHHhhcC-----cceeeCCCCHHHHHHHHHHhhc--CCeeeeeecch
Confidence 346888898888875 56899999999999999988874 3458999999999999999998 99999999999
Q ss_pred cccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcc---eEEEEeeC
Q 047490 260 AARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG---KVTSLVAK 305 (323)
Q Consensus 260 ~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g---~~~~~~~~ 305 (323)
+++|+|+ .+++||++++|+|+..|.||+||++|.|+.+ .++.|+..
T Consensus 148 ~~~Gidl~~~~~vi~~~~~~s~~~~~Q~iGR~~R~~~~k~~~~i~~~v~~ 197 (200)
T d2fwra1 148 LDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISR 197 (200)
T ss_dssp CCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEEC
T ss_pred hhcccCCCCCCEEEEeCCCCCHHHHHHHHHhcCCCCCCCcEEEEEEEecC
Confidence 9999999 9999999999999999999999999998633 34445443
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.75 E-value=3.1e-19 Score=142.41 Aligned_cols=105 Identities=19% Similarity=0.302 Sum_probs=90.7
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHH----------HHHHHhccccCCCCCEEEEeccccc---c
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQER----------VENLNKFKNEDGDCPTLVCTDLAAR---G 263 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r----------~~~~~~f~~~~g~~~ilv~t~~~~~---G 263 (323)
+++++||||++++.++.+++.|++.++.+..+|++++.+.| .+.++.|.. |+.+++|+|++..+ |
T Consensus 35 kggk~LVFcnSR~~aE~La~~L~~~Gi~a~~~Hgglsq~~R~~~gd~~i~~~~aLe~f~~--G~~dvVVaT~~~a~g~~g 112 (299)
T d1a1va2 35 KGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFT--GDFDSVIDCNTCVTQTVD 112 (299)
T ss_dssp HSSEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCGGGSCSSSSEEEEECTTC---CC--CCBSEEEECCEEEEEEEE
T ss_pred cCCCEEEECCcHHHHHHHHHHHHHCCCCEEEEeCCchHHHHHhccchHHHHHHHHHHHhc--CCCcEEEEEeehhccCCC
Confidence 46799999999999999999999999999999999998876 457888888 99999999999888 5
Q ss_pred cCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEee
Q 047490 264 LDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVA 304 (323)
Q Consensus 264 id~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~ 304 (323)
+|+ .+.+|++++.|.|...|.||+||+|| |++|....+..
T Consensus 113 iDid~V~~VI~~d~P~SvesyIQRiGRTGR-Gr~G~~~~l~~ 153 (299)
T d1a1va2 113 FSLDPTFTIETTTLPQDAVSRTQRRGRTGR-GKPGIYRFVAP 153 (299)
T ss_dssp CCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCEEEEESCS
T ss_pred CCCCcceEEEeCCCCCCHHHHHhhccccCC-CCCceEEEEec
Confidence 666 67799999999999999999999999 88887665444
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.73 E-value=5.7e-20 Score=148.61 Aligned_cols=119 Identities=16% Similarity=0.279 Sum_probs=100.1
Q ss_pred ChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEe--
Q 047490 180 SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCT-- 257 (323)
Q Consensus 180 ~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t-- 257 (323)
.+.|+..|..++... +.++||||++++.|+.+++.|++. +||+++..+|.+++++|++ |+++|||||
T Consensus 10 ~~~~~~~l~~~l~~~---~~~~iif~~~~~~~~~l~~~l~~~------~hg~~~~~~R~~~~~~f~~--g~~~vLVaT~a 78 (248)
T d1gkub2 10 NDESISTLSSILEKL---GTGGIIYARTGEEAEEIYESLKNK------FRIGIVTATKKGDYEKFVE--GEIDHLIGTAH 78 (248)
T ss_dssp SCCCTTTTHHHHTTS---CSCEEEEESSHHHHHHHHHTTTTS------SCEEECTTSSSHHHHHHHH--TSCSEEEEECC
T ss_pred CchHHHHHHHHHHHh---CCCEEEEECCHHHHHHHHHHHHHh------ccCCCCHHHHHHHHHHHHh--CCCeEEEEecc
Confidence 455777888888753 468999999999999999999753 7999999999999999999 999999999
Q ss_pred --cccccccCC-C-CCEEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHHHHHH
Q 047490 258 --DLAARGLDL-D-VDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVLLADR 313 (323)
Q Consensus 258 --~~~~~Gid~-~-~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~~~~~ 313 (323)
+.+++|+|+ + +++||+||+|+ |.|++||+||.|..|.+++++...+......
T Consensus 79 ~~~v~~rGlDip~~v~~VI~~d~P~----~~~r~gR~~R~g~~~~~~~~~~~~~~~~~~~ 134 (248)
T d1gkub2 79 YYGTLVRGLDLPERIRFAVFVGCPS----FRVTIEDIDSLSPQMVKLLAYLYRNVDEIER 134 (248)
T ss_dssp ------CCSCCTTTCCEEEEESCCE----EEEECSCGGGSCHHHHHHHHTTTSCHHHHHT
T ss_pred ccchhhhccCccccccEEEEeCCCc----chhhhhhhhccCcceEeeeeccHhhHHHHHH
Confidence 668999999 6 99999999995 7899999999999998888887766655443
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.70 E-value=2.3e-17 Score=132.78 Aligned_cols=126 Identities=21% Similarity=0.370 Sum_probs=93.9
Q ss_pred ChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC-CCeeEEecCCCCHHHHHHHHHhccccCCCCCEEE-Ee
Q 047490 180 SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN-QISTVNYHGEVPAQERVENLNKFKNEDGDCPTLV-CT 257 (323)
Q Consensus 180 ~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv-~t 257 (323)
...|+..+.+++.+..+.+.++||||+.....+.+...+... +..+..+||+++..+|..++++|++++ ...+++ ++
T Consensus 67 ~S~K~~~l~~~l~~~~~~g~kviIFs~~~~~~~~l~~~l~~~~~~~~~~i~G~~~~~~R~~~i~~F~~~~-~~~vll~~~ 145 (244)
T d1z5za1 67 RSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNP-SVKFIVLSV 145 (244)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCT-TCCEEEEEC
T ss_pred hhhHHHHHHHHHHhhcccccceEEEeeceehHHHHHHHHHhhccceEEEEecccchhccchhhhhhhccc-cchhccccc
Confidence 356999999999876678899999999999999998888654 788889999999999999999999733 345554 55
Q ss_pred cccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcc--eEEEEeeCC
Q 047490 258 DLAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKG--KVTSLVAKK 306 (323)
Q Consensus 258 ~~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g--~~~~~~~~~ 306 (323)
.+.+.|+|+ .+++||++++|||+..+.|+.||+.|.|+.. .++.++...
T Consensus 146 ~~~g~Glnl~~a~~vi~~~~~wn~~~~~Qa~~R~~R~Gq~~~v~i~~l~~~~ 197 (244)
T d1z5za1 146 KAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 197 (244)
T ss_dssp CTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETT
T ss_pred cccccccccchhhhhhhcCchhhhHHHhhhcceeeecCCCCceEEEEEeeCC
Confidence 789999999 9999999999999999999999999999644 445555554
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.70 E-value=2e-16 Score=124.36 Aligned_cols=144 Identities=26% Similarity=0.403 Sum_probs=117.3
Q ss_pred hhhccccCCCCccEEEEcCCHHHHHHHHHHHHHhcccc----ceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHH
Q 047490 7 AMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHA----RFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHI 82 (323)
Q Consensus 7 ~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~ 82 (323)
.+.........+..++++|+..++.+....+....... ...+....++.+..........+++|+|+||+++..++
T Consensus 59 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~TP~~l~~~~ 138 (209)
T d1q0ua_ 59 IMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFI 138 (209)
T ss_dssp HHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHH
T ss_pred eccccccccccccccccccccchhHHHHHHHHhhhccccccccccccccccchhhHHHHHHhccCceEEEecCchhhhhh
Confidence 33444455677899999999999999998887765543 24555666666555555566778999999999999999
Q ss_pred HcCCCCCCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcCceee
Q 047490 83 EDGNMVYGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQGIAHL 158 (323)
Q Consensus 83 ~~~~~~~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~~~~~ 158 (323)
.+....+++++++|+||||.+.+++|...+..++..++. +.|++++|||++++..++.+.++.++..+
T Consensus 139 ~~~~~~~~~l~~lViDEad~ll~~~f~~~v~~I~~~~~~--------~~Q~il~SATl~~~v~~l~~~~l~~p~~i 206 (209)
T d1q0ua_ 139 REQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPK--------DLQMLVFSATIPEKLKPFLKKYMENPTFV 206 (209)
T ss_dssp HTTCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTSCT--------TCEEEEEESCCCGGGHHHHHHHCSSCEEE
T ss_pred hhhccccccceEEEEeecccccccccHHHHHHHHHHCCC--------CCEEEEEEccCCHHHHHHHHHHCCCCEEE
Confidence 998888999999999999999999999999999988764 34999999999999999888888766543
|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=99.67 E-value=2.4e-16 Score=132.23 Aligned_cols=126 Identities=18% Similarity=0.282 Sum_probs=107.1
Q ss_pred hhHHHHHHHHhccCC-CCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCC-EEEEec
Q 047490 181 ENKLEALLQVLEPSL-SKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCP-TLVCTD 258 (323)
Q Consensus 181 ~~k~~~l~~~l~~~~-~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~-ilv~t~ 258 (323)
..|+..|.+++.... ..+.|+|||++.....+.+...|+..++....++|.++..+|..+++.|+.+++... +|++|.
T Consensus 100 S~Kl~~L~~ll~~~~~~~g~KvlIFs~~~~~ld~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~vlLls~~ 179 (346)
T d1z3ix1 100 SGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSK 179 (346)
T ss_dssp SHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGG
T ss_pred CHHHHHHHHHHHHHHHhcCCceeEEeehhhhhHHHHHHHhhhhccccccccchhHHHHHHHHHhhhcccccceeeeecch
Confidence 468888777776542 467899999999999999999999999999999999999999999999998333333 677789
Q ss_pred ccccccCC-CCCEEEEcCCCCCchhhhhhhcccccCCCcce--EEEEeeCC
Q 047490 259 LAARGLDL-DVDHVIMFDFPLNSIDYLHRTGRTARMGAKGK--VTSLVAKK 306 (323)
Q Consensus 259 ~~~~Gid~-~~~~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~--~~~~~~~~ 306 (323)
+++.|+|+ .+++||+|+++||+..+.|++||+.|.|+... ++.++...
T Consensus 180 agg~GlnL~~a~~vi~~d~~wnp~~~~Qa~~R~~R~GQ~~~V~v~rli~~~ 230 (346)
T d1z3ix1 180 AGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTG 230 (346)
T ss_dssp GSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETT
T ss_pred hhhhccccccceEEEEecCCCccchHhHhhhcccccCCCCceEEEEEEeCC
Confidence 99999999 99999999999999999999999999997654 44455544
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.58 E-value=5.3e-15 Score=115.29 Aligned_cols=122 Identities=16% Similarity=0.155 Sum_probs=89.4
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEE
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYL 95 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~v 95 (323)
.+.+++|++|+++|+.|+.+.+++++...+.++....++.........+. +++|+++||+.+.+.+......+++++++
T Consensus 51 ~~~~il~i~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~i~i~t~~~~~~~~~~~~~~~~~~~~v 129 (200)
T d1wp9a1 51 YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-RAKVIVATPQTIENDLLAGRISLEDVSLI 129 (200)
T ss_dssp SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSCCTTSCSEE
T ss_pred cCCcEEEEcCchHHHHHHHHHHHHhhcccccceeeeecccchhHHHHhhh-cccccccccchhHHHHhhhhhhccccceE
Confidence 35689999999999999999999998887888877776655444333332 35899999999999988888888999999
Q ss_pred eecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHH
Q 047490 96 VLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQK 146 (323)
Q Consensus 96 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~ 146 (323)
|+||+|++................. .+.+++++||||......
T Consensus 130 IiDE~H~~~~~~~~~~~~~~~~~~~--------~~~~~l~~SATp~~~~~~ 172 (200)
T d1wp9a1 130 VFDEAHRAVGNYAYVFIAREYKRQA--------KNPLVIGLTASPGSTPEK 172 (200)
T ss_dssp EEETGGGCSTTCHHHHHHHHHHHHC--------SSCCEEEEESCSCSSHHH
T ss_pred EEEehhhhhcchhHHHHHHHHHhcC--------CCCcEEEEEecCCCcHHH
Confidence 9999998865432222222211111 133899999998654443
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.57 E-value=2.3e-14 Score=111.68 Aligned_cols=128 Identities=16% Similarity=0.220 Sum_probs=96.7
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEE
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYL 95 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~v 95 (323)
+++++|+++|+++|+.|+.+.++++.+. ..++....++..... .....++|+++||..+..++......+.++++|
T Consensus 67 ~~~~vl~l~P~~~L~~q~~~~~~~~~~~-~~~v~~~~~~~~~~~---~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~i 142 (202)
T d2p6ra3 67 KGGKSLYVVPLRALAGEKYESFKKWEKI-GLRIGISTGDYESRD---EHLGDCDIIVTTSEKADSLIRNRASWIKAVSCL 142 (202)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHTTTTTT-TCCEEEECSSCBCCS---SCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEE
T ss_pred ccCcceeecccHHHHHHHHHHHHHHhhc-cccceeeccCccccc---ccccccceeeeccHHHHHHHhccchhhhhhhhc
Confidence 3568999999999999999999998764 345555555543322 223457899999999999998888888899999
Q ss_pred eecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHHhcC
Q 047490 96 VLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEECQG 154 (323)
Q Consensus 96 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~~~~ 154 (323)
|+||+|.+.+..+......++..+.... .+.|++++|||+++. .+ +..++..
T Consensus 143 i~DE~h~~~~~~r~~~~~~~l~~i~~~~-----~~~~~l~lSATl~n~-~~-~~~~l~~ 194 (202)
T d2p6ra3 143 VVDEIHLLDSEKRGATLEILVTKMRRMN-----KALRVIGLSATAPNV-TE-IAEWLDA 194 (202)
T ss_dssp EETTGGGGGCTTTHHHHHHHHHHHHHHC-----TTCEEEEEECCCTTH-HH-HHHHTTC
T ss_pred cccHHHHhcccccchHHHHHHHHHHhcC-----CCCcEEEEcCCCCcH-HH-HHHHcCC
Confidence 9999999988777777777777666543 245999999998753 32 3455543
|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=99.56 E-value=2.5e-14 Score=105.30 Aligned_cols=136 Identities=19% Similarity=0.224 Sum_probs=110.0
Q ss_pred ChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc
Q 047490 180 SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL 259 (323)
Q Consensus 180 ~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~ 259 (323)
...|.+++.+.+.+....+.|+||++.|.+.++.++..|++.+++..+++......+-+-+.+.-.. | .|.|||+.
T Consensus 16 ~~eK~~AIi~eV~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLnAk~~~~Ea~II~~Ag~~--g--~VtIATNm 91 (175)
T d1tf5a4 16 MEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQK--G--AVTIATNM 91 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTST--T--CEEEEETT
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCceeehhhhHHHHHHHHHhccCC--C--ceeehhhH
Confidence 5678899998887777789999999999999999999999999999999988765444433333333 4 49999999
Q ss_pred cccccCCCCC---------EEEEcCCCCCchhhhhhhcccccCCCcceEEEEeeCCcHH----HHHHHHHHHH
Q 047490 260 AARGLDLDVD---------HVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDVL----LADRIEEAIR 319 (323)
Q Consensus 260 ~~~Gid~~~~---------~vi~~~~p~s~~~~~Q~~GR~~R~~~~g~~~~~~~~~~~~----~~~~i~~~l~ 319 (323)
+++|.|+.+. |||....|.|.+...|..||+||.|.+|....+++..|.- .-.++.+.++
T Consensus 92 AGRGtDikl~~~v~~~GGLhVI~t~~~~s~Rid~Ql~GR~gRQGdpGs~~~~~sleD~l~~~f~~~~~~~~~~ 164 (175)
T d1tf5a4 92 AGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMEDELMRRFGAERTMAMLD 164 (175)
T ss_dssp SSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSSGGGSSHHHHHHHHHH
T ss_pred HHcCCCccchHHHHhCCCcEEEEeccCcchhHHHHHhcchhhhCCCcccEEEEEcCHHHHHHHhHHHHHHHHH
Confidence 9999997322 8999999999999999999999999999999999876532 2345555443
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.49 E-value=2.4e-14 Score=116.57 Aligned_cols=102 Identities=17% Similarity=0.183 Sum_probs=80.7
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccccCCCCCEEEEcCC
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARGLDLDVDHVIMFDF 276 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~Gid~~~~~vi~~~~ 276 (323)
.+++++|||++..+++.+++.|++.+..|..+||.+...+++ .|.+ ++.+++|||+++++|+|+++.+||..+.
T Consensus 35 ~~g~~~~F~~s~~~~~~~a~~L~~~g~~V~~l~~~~~~~e~~----~~~~--~~~~~~~~t~~~~~~~~~~~~~vid~g~ 108 (299)
T d1yksa2 35 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYP----TIKQ--KKPDFILATDIAEMGANLCVERVLDCRT 108 (299)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC--------------CCCSEEEESSSTTCCTTCCCSEEEECCE
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCcCcHhHHh----hhhc--CCcCEEEEechhhhceecCceEEEecCc
Confidence 357999999999999999999999999999999999877755 4677 8899999999999999999999997764
Q ss_pred C-------------------CCchhhhhhhcccccCCCcceEEEEee
Q 047490 277 P-------------------LNSIDYLHRTGRTARMGAKGKVTSLVA 304 (323)
Q Consensus 277 p-------------------~s~~~~~Q~~GR~~R~~~~g~~~~~~~ 304 (323)
+ .|.....||.||+||.+....++.++.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~gr~~~~~~~~~~y~ 155 (299)
T d1yksa2 109 AFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYS 155 (299)
T ss_dssp EEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred eeceeeecCCCCeeEEeeeecCHHHHHHhcccccccCCCceEEEEeC
Confidence 2 356666899999999875544544444
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.49 E-value=1.5e-14 Score=115.78 Aligned_cols=131 Identities=18% Similarity=0.192 Sum_probs=82.9
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEE----eecCccCCcccccc--CCCCCEEEeChHHHHHHHHcCCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTM----VSGGGRLRPQEDSL--NNPIDMVVGTPGRILQHIEDGNMVY 89 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~Iii~Tp~~l~~~~~~~~~~~ 89 (323)
++.++||++||++|+.|+.++++++....++.+.. ..++.......+.+ ..+++|+|+||+.+.+. ...+
T Consensus 85 ~~~rvliv~Pt~~La~Q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Ilv~Tp~~l~~~----~~~~ 160 (237)
T d1gkub1 85 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKH----YREL 160 (237)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHC----STTS
T ss_pred hcCeEEEEeccHHHHHHHHHHHHHHHHHcCCceEEEEeeeecccchhhhhhhhccccccceeccChHHHHHh----hhhc
Confidence 46799999999999999999999998776554332 23332222222222 23578999999977653 3346
Q ss_pred CCCcEEeecchhhhhcCCChhhHHHHHhhh--cccc---CCCCCCCceEEEEEeecchhhHHHHHHHh
Q 047490 90 GDIKYLVLDEADTMFDRGFGPDIRKFLVPL--KNRA---SKPNGQGFQTVLVSATMTKAVQKLVDEEC 152 (323)
Q Consensus 90 ~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~--~~~~---~~~~~~~~~~i~~sat~~~~~~~~~~~~~ 152 (323)
+++++||+||+|.+++.+. .+..+...+ .... ........+++++|||+++.....+.+.+
T Consensus 161 ~~~~~vVvDE~d~~l~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~l~r~l 226 (237)
T d1gkub1 161 GHFDFIFVDDVDAILKASK--NVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQL 226 (237)
T ss_dssp CCCSEEEESCHHHHHTSTH--HHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHH
T ss_pred CCCCEEEEEChhhhhhccc--chhHHHHhcCChHHHHHHHhhCCCCCeEEEEeCCCCcccHHHHHHHH
Confidence 7899999999999987542 222222221 1100 00111244899999999876655444433
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.41 E-value=5.8e-13 Score=104.17 Aligned_cols=117 Identities=19% Similarity=0.284 Sum_probs=89.9
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccc----cCCCCCEEEeChHHHHHHHHcCCCCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDS----LNNPIDMVVGTPGRILQHIEDGNMVYGD 91 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Iii~Tp~~l~~~~~~~~~~~~~ 91 (323)
.+.++++++||..|+.|..+.+++++...+.++..+++.......... ..+..+|+|+|-..+. ....+++
T Consensus 103 ~g~qv~~l~Pt~~La~Q~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~g~~~iviGths~l~-----~~~~f~~ 177 (233)
T d2eyqa3 103 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKD 177 (233)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSS
T ss_pred cCCceEEEccHHHhHHHHHHHHHHHHhhCCCEEEeccCcccchhHHHHHHHHhCCCCCEEEeehhhhc-----cCCcccc
Confidence 478999999999999999999999999889999999998776544332 3566899999954333 4566789
Q ss_pred CcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHH
Q 047490 92 IKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDE 150 (323)
Q Consensus 92 ~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~ 150 (323)
+.+||+||-|+ |+-..+..+..... +++++.+||||.+..-.....
T Consensus 178 LgLiIiDEeH~-----fg~kQ~~~l~~~~~--------~~~~l~~SATPiprtl~~~~~ 223 (233)
T d2eyqa3 178 LGLLIVDEEHR-----FGVRHKERIKAMRA--------NVDILTLTATPIPRTLNMAMS 223 (233)
T ss_dssp EEEEEEESGGG-----SCHHHHHHHHHHHT--------TSEEEEEESSCCCHHHHHHHT
T ss_pred ccceeeechhh-----hhhHHHHHHHhhCC--------CCCEEEEecchhHHHHHHHHH
Confidence 99999999995 44444555444332 348999999998887665543
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.35 E-value=5.6e-13 Score=106.27 Aligned_cols=117 Identities=21% Similarity=0.256 Sum_probs=86.0
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMVYGD 91 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~~~~ 91 (323)
.+.++++++||..|+.|.++.++++++..+.++..++|+.........+ .+.++|+|||..-+.. ...+.+
T Consensus 131 ~g~q~~~m~Pt~~La~Qh~~~~~~~f~~~~~~v~~l~~~~~~~~r~~~~~~~~~g~~~iiIGThsl~~~-----~~~f~~ 205 (264)
T d1gm5a3 131 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKN 205 (264)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSC
T ss_pred cccceeEEeehHhhhHHHHHHHHHhhhhccccceeeccccchHHHHHHHHHHHCCCCCEEEeehHHhcC-----CCCccc
Confidence 3679999999999999999999999999999999999988765544332 4668999999654442 455779
Q ss_pred CcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHH
Q 047490 92 IKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDE 150 (323)
Q Consensus 92 ~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~ 150 (323)
+++||+||-|+.. -..+..+.+ .+.+++++++||||.+........
T Consensus 206 LglviiDEqH~fg-----v~Qr~~l~~--------~~~~~~~l~~SATPiprtl~~~~~ 251 (264)
T d1gm5a3 206 LGLVIIDEQHRFG-----VKQREALMN--------KGKMVDTLVMSATPIPRSMALAFY 251 (264)
T ss_dssp CCEEEEESCCCC----------CCCCS--------SSSCCCEEEEESSCCCHHHHHHHT
T ss_pred cceeeeccccccc-----hhhHHHHHH--------hCcCCCEEEEECCCCHHHHHHHHc
Confidence 9999999999643 322221111 122458999999998877665543
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Probab=99.33 E-value=8.3e-13 Score=107.61 Aligned_cols=113 Identities=16% Similarity=0.211 Sum_probs=80.5
Q ss_pred CCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCc
Q 047490 14 KPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIK 93 (323)
Q Consensus 14 ~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~ 93 (323)
...+.++|||||+++|+.|+.+++..++......+....++...... .....+|+++|++++..... ..+++++
T Consensus 154 ~~~~~k~Liivp~~~Lv~Q~~~~f~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~i~i~t~qs~~~~~~---~~~~~f~ 227 (282)
T d1rifa_ 154 ENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQPK---EWFSQFG 227 (282)
T ss_dssp HHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECSTTCSSTTC---CCTTCSEEEECHHHHTTSCG---GGGGGEE
T ss_pred hcccceEEEEEcCchhHHHHHHHHHHhhccccccceeecceeccccc---ccccceEEEEeeehhhhhcc---cccCCCC
Confidence 34456899999999999999999999987666667777776543222 22346899999987654322 3467899
Q ss_pred EEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhh
Q 047490 94 YLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAV 144 (323)
Q Consensus 94 ~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~ 144 (323)
+||+||||++. ...+..++..+.... ..+++|||+++..
T Consensus 228 ~VIvDEaH~~~----a~~~~~il~~~~~~~--------~rlGlTaT~~~~~ 266 (282)
T d1rifa_ 228 MMMNDECHLAT----GKSISSIISGLNNCM--------FKFGLSGSLRDGK 266 (282)
T ss_dssp EEEEETGGGCC----HHHHHHHTTTCTTCC--------EEEEECSSCCTTS
T ss_pred EEEEECCCCCC----chhHHHHHHhccCCC--------eEEEEEeecCCCC
Confidence 99999999863 355666665553221 4689999986543
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.33 E-value=2.2e-13 Score=106.37 Aligned_cols=126 Identities=13% Similarity=0.101 Sum_probs=81.8
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCC----ccccccCCCCCEEEeChHHHHHHHHcCCCCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLR----PQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGD 91 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~ 91 (323)
+..++++++|+++|+.|+.+.++.++... ....+..... ..........+|+++||+.+............+
T Consensus 64 ~~~~~~~v~P~~~L~~q~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~~~~~~~~ 139 (206)
T d1oywa2 64 LNGLTVVVSPLISLMKDQVDQLQANGVAA----ACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWN 139 (206)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHHTTCCE----EEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSC
T ss_pred ccCceEEeccchhhhhhHHHHHHhhcccc----cccccccccccchhHHHHHhcCCceEEEEechhhhchhhcccchhhe
Confidence 35789999999999999999999986532 2222221111 112223445789999999886544444445678
Q ss_pred CcEEeecchhhhhcCCChh--hHHHHHhhhccccCCCCCCCceEEEEEeecchhhHHHHHHH
Q 047490 92 IKYLVLDEADTMFDRGFGP--DIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQKLVDEE 151 (323)
Q Consensus 92 ~~~vIiDE~h~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~~~~~~ 151 (323)
++++|+||+|.+.+++... .+..+ ..+.... .+.|++++|||+++...+.+...
T Consensus 140 v~~lviDEaH~~~~~~~~~~~~~~~~-~~l~~~~-----~~~~ii~lSATl~~~v~~di~~~ 195 (206)
T d1oywa2 140 PVLLAVDEAHCISQWGHDFRPEYAAL-GQLRQRF-----PTLPFMALTATADDTTRQDIVRL 195 (206)
T ss_dssp EEEEEESSGGGGCTTSSCCCHHHHGG-GGHHHHC-----TTSCEEEEESCCCHHHHHHHHHH
T ss_pred eeeeeeeeeeeeeccccchHHHHHHH-HHHHHhC-----CCCceEEEEeCCCHHHHHHHHHH
Confidence 9999999999998876432 22222 1111111 13489999999998876555444
|
| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.18 E-value=2.9e-10 Score=84.90 Aligned_cols=126 Identities=20% Similarity=0.202 Sum_probs=106.8
Q ss_pred ChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecc
Q 047490 180 SENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDL 259 (323)
Q Consensus 180 ~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~ 259 (323)
...|..++.+.+.+....+.|+||-+.|....+.+.+.|.+.+++..+++..-...+-+-|.+.=+. |. |-|||+.
T Consensus 16 ~~~K~~Avv~ei~~~h~~GqPVLVGT~SVe~SE~lS~lL~~~gi~h~vLNAK~herEAeIIAqAG~~--Ga--VTIATNM 91 (219)
T d1nkta4 16 EEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRR--GG--VTVATNM 91 (219)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTST--TC--EEEEETT
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEeeCcHHHHHHHHHHHHHhccchhccchhhHHHHHHHHHhcccC--Cc--EEeeccc
Confidence 5679999998888877899999999999999999999999999999999998654444444444443 54 8999999
Q ss_pred cccccCCCC-----------------------------------------------------CEEEEcCCCCCchhhhhh
Q 047490 260 AARGLDLDV-----------------------------------------------------DHVIMFDFPLNSIDYLHR 286 (323)
Q Consensus 260 ~~~Gid~~~-----------------------------------------------------~~vi~~~~p~s~~~~~Q~ 286 (323)
+++|.|+-+ =+||-.....|.+.-.|.
T Consensus 92 AGRGTDI~LGgn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIGTErHeSrRIDnQL 171 (219)
T d1nkta4 92 AGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQL 171 (219)
T ss_dssp CSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHH
T ss_pred cCCCCceeecCchhhhhHHHhhhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeccccccccccccc
Confidence 999999822 178888888899999999
Q ss_pred hcccccCCCcceEEEEeeCCcHH
Q 047490 287 TGRTARMGAKGKVTSLVAKKDVL 309 (323)
Q Consensus 287 ~GR~~R~~~~g~~~~~~~~~~~~ 309 (323)
.||+||.|.+|.+..|++..|.-
T Consensus 172 RGRsGRQGDPGsSrFflSLeDdL 194 (219)
T d1nkta4 172 RGRSGRQGDPGESRFYLSLGDEL 194 (219)
T ss_dssp HHTSSGGGCCEEEEEEEETTSHH
T ss_pred cccccccCCCccceeEEeccHHH
Confidence 99999999999999999987663
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.18 E-value=2.8e-11 Score=87.55 Aligned_cols=106 Identities=15% Similarity=0.082 Sum_probs=68.5
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcE
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKY 94 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~ 94 (323)
..+.+++|++|+++|++|+.+.+.++.... .....++.. ......+.++|++.+.... ...++++++
T Consensus 31 ~~~~~vli~~P~~~l~~q~~~~~~~~~~~~---~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 97 (136)
T d1a1va1 31 AQGYKVLVLNPSVAATLGFGAYMSKAHGVD---PNIRTGVRT-------ITTGSPITYSTYGKFLADG---GCSGGAYDI 97 (136)
T ss_dssp TTTCCEEEEESCHHHHHHHHHHHHHHHSCC---CEEECSSCE-------ECCCCSEEEEEHHHHHHTT---GGGGCCCSE
T ss_pred HcCCcEEEEcChHHHHHHHHHHHHHHhhcc---ccccccccc-------cccccceEEEeeeeecccc---chhhhcCCE
Confidence 347799999999999999999999886542 222222211 1122468899988765543 345789999
Q ss_pred EeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeec
Q 047490 95 LVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATM 140 (323)
Q Consensus 95 vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~ 140 (323)
||+||+|++... ....+..++..+... .+.+++++||||
T Consensus 98 vIiDE~H~~~~~-~~~~~~~~l~~~~~~------~~~~~l~~TATP 136 (136)
T d1a1va1 98 IICDECHSTDAT-SILGIGTVLDQAETA------GARLVVLATATP 136 (136)
T ss_dssp EEEETTTCCSHH-HHHHHHHHHHHTTTT------TCSEEEEEESSC
T ss_pred EEEecccccCHH-HHHHHHHHHHHHHHC------CCCcEEEEeCCC
Confidence 999999975321 112233333333221 244899999997
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.09 E-value=1.9e-10 Score=89.19 Aligned_cols=97 Identities=15% Similarity=0.091 Sum_probs=68.4
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEEe
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYLV 96 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~vI 96 (323)
+.++||+||+++|+.|+.+.++.+... .+....|+. ....+|+++|++.+...... ..+++++||
T Consensus 110 ~~~~Liv~p~~~L~~q~~~~~~~~~~~---~~~~~~~~~---------~~~~~i~i~t~~~~~~~~~~---~~~~~~lvI 174 (206)
T d2fz4a1 110 STPTLIVVPTLALAEQWKERLGIFGEE---YVGEFSGRI---------KELKPLTVSTYDSAYVNAEK---LGNRFMLLI 174 (206)
T ss_dssp CSCEEEEESSHHHHHHHHHHHGGGCGG---GEEEESSSC---------BCCCSEEEEEHHHHHHTHHH---HTTTCSEEE
T ss_pred cCceeEEEcccchHHHHHHHHHhhccc---chhhccccc---------ccccccccceehhhhhhhHh---hCCcCCEEE
Confidence 468999999999999999999988643 333343332 12347999999988665443 245789999
Q ss_pred ecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecc
Q 047490 97 LDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMT 141 (323)
Q Consensus 97 iDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~ 141 (323)
+||+|++.+ +.+..++..+... ..+++|||+.
T Consensus 175 iDEaH~~~a----~~~~~i~~~~~~~---------~~lgLTATl~ 206 (206)
T d2fz4a1 175 FDEVHHLPA----ESYVQIAQMSIAP---------FRLGLTATFE 206 (206)
T ss_dssp EECSSCCCT----TTHHHHHHTCCCS---------EEEEEEESCC
T ss_pred EECCeeCCc----HHHHHHHhccCCC---------cEEEEecCCC
Confidence 999998743 3445555444322 5789999973
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.08 E-value=2.5e-10 Score=82.66 Aligned_cols=106 Identities=15% Similarity=0.108 Sum_probs=65.8
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcEE
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKYL 95 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~v 95 (323)
.+.++++++|++++++|+.+.+.... .......+. .....+..+.+.|...+..... ....+.++++|
T Consensus 35 ~~~~vli~~p~~~l~~q~~~~~~~~~----~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~lv 102 (140)
T d1yksa1 35 RRLRTLVLAPTRVVLSEMKEAFHGLD----VKFHTQAFS-------AHGSGREVIDAMCHATLTYRML-EPTRVVNWEVI 102 (140)
T ss_dssp TTCCEEEEESSHHHHHHHHHHTTTSC----EEEESSCCC-------CCCCSSCCEEEEEHHHHHHHHT-SSSCCCCCSEE
T ss_pred cCceeeeeecchhHHHHHHHHhhhhh----hhhcccccc-------cccccccchhhhhHHHHHHHHh-ccccccceeEE
Confidence 46799999999999999988765432 222111111 1111124677788777766443 34567899999
Q ss_pred eecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecc
Q 047490 96 VLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMT 141 (323)
Q Consensus 96 IiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~ 141 (323)
|+||||.+... ....+.++..+... .+.++++||||||
T Consensus 103 IiDEaH~~~~~--~~~~~~~~~~~~~~------~~~~~l~lTATPp 140 (140)
T d1yksa1 103 IMDEAHFLDPA--SIAARGWAAHRARA------NESATILMTATPP 140 (140)
T ss_dssp EETTTTCCSHH--HHHHHHHHHHHHHT------TSCEEEEECSSCT
T ss_pred EEccccccChh--hHHHHHHHHHHhhC------CCCCEEEEEcCCC
Confidence 99999976432 22233333332211 1349999999997
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=98.61 E-value=1e-07 Score=77.90 Aligned_cols=111 Identities=15% Similarity=0.256 Sum_probs=72.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccc--------ccCCCCCEEEeChHHHHHHHHcCCCC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQED--------SLNNPIDMVVGTPGRILQHIEDGNMV 88 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~Iii~Tp~~l~~~~~~~~~~ 88 (323)
..++||+||. .|+.||.+++.+|... .......+++........ ......+++++|++.+..... .+.
T Consensus 114 ~~~~LIV~P~-sl~~qW~~Ei~k~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~sy~~~~~~~~--~l~ 189 (298)
T d1z3ix2 114 IDKVIVVSPS-SLVRNWYNEVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLH 189 (298)
T ss_dssp CSCEEEEECH-HHHHHHHHHHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTT
T ss_pred CCcEEEEccc-hhhHHHHHHHHhhcCC-ceeEEEEeCchHHHHHHHHHHhhhccCccccceEEEEeecccccchh--ccc
Confidence 3579999996 5899999999999864 344555555433221110 112235799999998865433 233
Q ss_pred CCCCcEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecch
Q 047490 89 YGDIKYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTK 142 (323)
Q Consensus 89 ~~~~~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~ 142 (323)
..++++||+||+|++-+.. ......+..+... ..+++||||..
T Consensus 190 ~~~~~~vI~DEaH~ikn~~--s~~~~a~~~l~~~---------~rllLTGTPi~ 232 (298)
T d1z3ix2 190 KGKVGLVICDEGHRLKNSD--NQTYLALNSMNAQ---------RRVLISGTPIQ 232 (298)
T ss_dssp TSCCCEEEETTGGGCCTTC--HHHHHHHHHHCCS---------EEEEECSSCSG
T ss_pred ccceeeeeccccccccccc--chhhhhhhccccc---------eeeeecchHHh
Confidence 4468999999999986532 3334444444332 68999999954
|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.33 E-value=7.2e-07 Score=69.80 Aligned_cols=110 Identities=17% Similarity=0.223 Sum_probs=69.5
Q ss_pred cCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCC
Q 047490 13 MKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDI 92 (323)
Q Consensus 13 ~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~ 92 (323)
.+.+..++||+|| ..+..||.+++.++.... .+.......... ...+.+|+++|++.+..... +.--.+
T Consensus 57 ~~~~~~~~LIv~p-~~l~~~W~~e~~~~~~~~--~~~~~~~~~~~~-----~~~~~~vvi~~~~~~~~~~~---l~~~~~ 125 (230)
T d1z63a1 57 KENELTPSLVICP-LSVLKNWEEELSKFAPHL--RFAVFHEDRSKI-----KLEDYDIILTTYAVLLRDTR---LKEVEW 125 (230)
T ss_dssp HTTCCSSEEEEEC-STTHHHHHHHHHHHCTTS--CEEECSSSTTSC-----CGGGSSEEEEEHHHHTTCHH---HHTCCE
T ss_pred hcccccccceecc-hhhhhHHHHHHHhhcccc--cceeeccccchh-----hccCcCEEEeeHHHHHhHHH---Hhcccc
Confidence 3455578999999 677899999999987643 333322221111 11236899999988754322 122367
Q ss_pred cEEeecchhhhhcCCChhhHHHHHhhhccccCCCCCCCceEEEEEeecchhh
Q 047490 93 KYLVLDEADTMFDRGFGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAV 144 (323)
Q Consensus 93 ~~vIiDE~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~ 144 (323)
++||+||+|.+.+.. ......+..+... ..+++||||....
T Consensus 126 ~~vI~DEah~~k~~~--s~~~~~~~~l~a~---------~r~~LTgTPi~n~ 166 (230)
T d1z63a1 126 KYIVIDEAQNIKNPQ--TKIFKAVKELKSK---------YRIALTGTPIENK 166 (230)
T ss_dssp EEEEEETGGGGSCTT--SHHHHHHHTSCEE---------EEEEECSSCSTTC
T ss_pred eEEEEEhhhcccccc--hhhhhhhhhhccc---------eEEEEecchHHhH
Confidence 899999999986643 2333334444332 6799999996443
|
| >d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=97.81 E-value=4.3e-05 Score=59.26 Aligned_cols=132 Identities=11% Similarity=0.118 Sum_probs=92.2
Q ss_pred hhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHH-HHHHHcCC
Q 047490 8 MLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRI-LQHIEDGN 86 (323)
Q Consensus 8 ~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l-~~~~~~~~ 86 (323)
+.+.+..-.+..|=|++.+.-||.-=++++..+...+|++++....+.......... .++|+++|...| +++++.+.
T Consensus 112 l~a~l~al~g~~vhvvTvNdyLA~RDae~m~~iy~~lGlsvg~~~~~~~~~~r~~~Y--~~di~Ygt~~e~~fDyLrd~~ 189 (273)
T d1tf5a3 112 LPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY--AADITYSTNNELGFDYLRDNM 189 (273)
T ss_dssp HHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCceEEecCccccchhhhHHhHHHHHcCCCccccccccCHHHHHHHh--hCCceecchhhhhhhhcchhh
Confidence 333334444667889999999999999999999999999999998776555444444 369999999998 66665542
Q ss_pred ------CCCCCCcEEeecchhhhhcCC-Chh-------------hHHHHHhhhccccCCCCCCCceEEEEEeecchhhHH
Q 047490 87 ------MVYGDIKYLVLDEADTMFDRG-FGP-------------DIRKFLVPLKNRASKPNGQGFQTVLVSATMTKAVQK 146 (323)
Q Consensus 87 ------~~~~~~~~vIiDE~h~~~~~~-~~~-------------~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~~~~ 146 (323)
...+.+.+.|+||+|.++=.+ ..+ .+...+.... ++.+||+|...+..+
T Consensus 190 ~~~~~~~~~r~~~~aIvDEvDsiliDeartpliisg~~~~~a~it~q~~f~~y~-----------~l~gmtgta~~~~~e 258 (273)
T d1tf5a3 190 VLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQSMTLATITFQNYFRMYE-----------KLAGMTGTAKTEEEE 258 (273)
T ss_dssp CSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEEEEEEEEHHHHHTTSS-----------EEEEEESCCGGGHHH
T ss_pred hcChhhhccCCCCEEEEEcchhhhhhccCCceEeccCccchhhhhHHHHHHHHH-----------HHhCCccccHHHHHH
Confidence 235678999999999975222 111 1333333332 789999998776666
Q ss_pred HHHHHh
Q 047490 147 LVDEEC 152 (323)
Q Consensus 147 ~~~~~~ 152 (323)
+.+-+.
T Consensus 259 ~~~iy~ 264 (273)
T d1tf5a3 259 FRNIYN 264 (273)
T ss_dssp HHHHHC
T ss_pred HHhccC
Confidence 555443
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.61 E-value=8.2e-05 Score=58.41 Aligned_cols=110 Identities=11% Similarity=0.068 Sum_probs=79.2
Q ss_pred EEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHh----hCCCeeEEecCCCCHHHHHHHHHhccccCC
Q 047490 174 FIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLN----ENQISTVNYHGEVPAQERVENLNKFKNEDG 249 (323)
Q Consensus 174 ~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g 249 (323)
...-+-+..|....+..+......+.++++.+|+.-.|...++.++ ..+..+..+||+++..+|.+++....+ |
T Consensus 108 LL~GdvGSGKT~Va~~a~~~~~~~g~q~~~m~Pt~~La~Qh~~~~~~~f~~~~~~v~~l~~~~~~~~r~~~~~~~~~--g 185 (264)
T d1gm5a3 108 LLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRN--G 185 (264)
T ss_dssp EEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHS--S
T ss_pred eeeccccccccHHHHHHHHHHHhcccceeEEeehHhhhHHHHHHHHHhhhhccccceeeccccchHHHHHHHHHHHC--C
Confidence 3444446667766655555555678899999999888877665554 457899999999999999999999999 9
Q ss_pred CCCEEEEeccc-ccccCC-CCCEEEEcCCCCCchhhhhhh
Q 047490 250 DCPTLVCTDLA-ARGLDL-DVDHVIMFDFPLNSIDYLHRT 287 (323)
Q Consensus 250 ~~~ilv~t~~~-~~Gid~-~~~~vi~~~~p~s~~~~~Q~~ 287 (323)
+.+|+|+|.++ ...+.+ ++..||.=.-- .-.|.||.
T Consensus 186 ~~~iiIGThsl~~~~~~f~~LglviiDEqH--~fgv~Qr~ 223 (264)
T d1gm5a3 186 QIDVVIGTHALIQEDVHFKNLGLVIIDEQH--RFGVKQRE 223 (264)
T ss_dssp CCCEEEECTTHHHHCCCCSCCCEEEEESCC--CC-----C
T ss_pred CCCEEEeehHHhcCCCCccccceeeecccc--ccchhhHH
Confidence 99999999664 446888 88877764422 22345654
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=97.57 E-value=0.00018 Score=55.28 Aligned_cols=102 Identities=13% Similarity=0.084 Sum_probs=82.6
Q ss_pred eeEEeccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhh----CCCeeEEecCCCCHHHHHHHHHhcccc
Q 047490 172 HDFIKLSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNE----NQISTVNYHGEVPAQERVENLNKFKNE 247 (323)
Q Consensus 172 ~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~----~~~~~~~~~~~~~~~~r~~~~~~f~~~ 247 (323)
.....-+-+..|....+..+....+.+.++++.+|+...+...++.+++ .+..+..+||.++..++.+++....+
T Consensus 78 ~~LL~GdvGsGKT~V~~~a~~~~~~~g~qv~~l~Pt~~La~Q~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~- 156 (233)
T d2eyqa3 78 DRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAE- 156 (233)
T ss_dssp EEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHT-
T ss_pred CeEEEcCCCCCcHHHHHHHHHHHHHcCCceEEEccHHHhHHHHHHHHHHHHhhCCCEEEeccCcccchhHHHHHHHHhC-
Confidence 3445555567788777777766667899999999999999988888775 47788999999999999999999999
Q ss_pred CCCCCEEEEecccc-cccCC-CCCEEEEcC
Q 047490 248 DGDCPTLVCTDLAA-RGLDL-DVDHVIMFD 275 (323)
Q Consensus 248 ~g~~~ilv~t~~~~-~Gid~-~~~~vi~~~ 275 (323)
|+.+|+|+|..+- ..+.+ ++..||.=.
T Consensus 157 -g~~~iviGths~l~~~~~f~~LgLiIiDE 185 (233)
T d2eyqa3 157 -GKIDILIGTHKLLQSDVKFKDLGLLIVDE 185 (233)
T ss_dssp -TCCSEEEECTHHHHSCCCCSSEEEEEEES
T ss_pred -CCCCEEEeehhhhccCCccccccceeeec
Confidence 9999999997654 46777 777766643
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=96.59 E-value=0.001 Score=49.71 Aligned_cols=81 Identities=16% Similarity=0.167 Sum_probs=65.1
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCCCC
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMVYG 90 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~~~ 90 (323)
.++.++.||||..+-.....+.+++.++ +.++..++|.....+....+ .+..+|+|+|. +-...+...
T Consensus 29 ~rGgQvy~V~p~I~~~e~~~~~l~~~~p--~~~i~~lHGkm~~~eke~im~~F~~g~~~ILv~Tt------vIEvGiDvp 100 (211)
T d2eyqa5 29 LRGGQVYYLYNDVENIQKAAERLAELVP--EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT------IIETGIDIP 100 (211)
T ss_dssp TTTCEEEEECCCSSCHHHHHHHHHHHCT--TSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS------TTGGGSCCT
T ss_pred HcCCeEEEEEcCccchhhHHHHHHHhCC--ceEEEEEEeccCHHHHHHHHHHHHcCCcceEEEeh------hhhhccCCC
Confidence 3588999999999999999999999987 45899999987766554332 46689999994 234467788
Q ss_pred CCcEEeecchhhh
Q 047490 91 DIKYLVLDEADTM 103 (323)
Q Consensus 91 ~~~~vIiDE~h~~ 103 (323)
+..++|+.+|+++
T Consensus 101 nA~~iiI~~a~rf 113 (211)
T d2eyqa5 101 TANTIIIERADHF 113 (211)
T ss_dssp TEEEEEETTTTSS
T ss_pred CCcEEEEecchhc
Confidence 9999999999964
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=96.58 E-value=0.014 Score=42.21 Aligned_cols=77 Identities=14% Similarity=0.160 Sum_probs=61.1
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMVYGD 91 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~~~~ 91 (323)
++.++||.|+|+.-+.++.+.|++. |+++..++|+....++...+ .+..+|+|+|. +....+...+
T Consensus 30 ~g~r~lvfc~t~~~~~~l~~~L~~~----Gi~a~~~Hg~~~~~eR~~~l~~F~~G~~~vLVaT~------v~~~GiDip~ 99 (174)
T d1c4oa2 30 RGERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN------LLREGLDIPE 99 (174)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC------CCCTTCCCTT
T ss_pred cCCcEEEEEcchhHHHHHHHHHHhc----CCceEEEecccchHHHHHHHHHHHCCCeEEEEeee------eeeeeccCCC
Confidence 4779999999999999988888875 77999999998866654443 56789999993 3345678899
Q ss_pred CcEEeecchhh
Q 047490 92 IKYLVLDEADT 102 (323)
Q Consensus 92 ~~~vIiDE~h~ 102 (323)
+++||+=+++.
T Consensus 100 V~~Vi~~~~~~ 110 (174)
T d1c4oa2 100 VSLVAILDADK 110 (174)
T ss_dssp EEEEEETTTTS
T ss_pred CcEEEEecccc
Confidence 99999866653
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=95.40 E-value=0.013 Score=43.53 Aligned_cols=82 Identities=13% Similarity=0.222 Sum_probs=59.3
Q ss_pred hhhhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHH
Q 047490 6 EAMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQH 81 (323)
Q Consensus 6 ~~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~ 81 (323)
+.++..+...++.++||-++|+.-+..++..++.. ++.+..++|+.....+...+ .+..+|+|+|- .
T Consensus 19 ~~L~~~l~~~~~~~~IIF~~t~~~~~~l~~~l~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ilvaTd-----~ 89 (200)
T d1oywa3 19 DQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSK----GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV-----A 89 (200)
T ss_dssp HHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT-----T
T ss_pred HHHHHHHHhcCCCCEEEEEeeehhhHHhhhhhccC----CceeEEecCCCcHHHHHHHHHHHhcccceEEEecc-----h
Confidence 34555555566778999999999999998888775 56888899987655443332 45678999993 2
Q ss_pred HHcCCCCCCCCcEEee
Q 047490 82 IEDGNMVYGDIKYLVL 97 (323)
Q Consensus 82 ~~~~~~~~~~~~~vIi 97 (323)
....+.+.++++||-
T Consensus 90 -~~~GiD~p~v~~VI~ 104 (200)
T d1oywa3 90 -FGMGINKPNVRFVVH 104 (200)
T ss_dssp -SCTTTCCTTCCEEEE
T ss_pred -hhhccCCCCCCEEEE
Confidence 233567788888874
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.24 E-value=0.017 Score=41.37 Aligned_cols=81 Identities=10% Similarity=0.188 Sum_probs=59.6
Q ss_pred ccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcC
Q 047490 10 GVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDG 85 (323)
Q Consensus 10 ~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~ 85 (323)
..+...+..++||-|.++.-+.++++.+... ++.+..++|+.....+...+ .+...|+|+|- .+ ..
T Consensus 20 ~ll~~~~~~k~iIF~~s~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~l~~f~~~~~~iLv~Td-----v~-~r 89 (162)
T d1fuka_ 20 DLYDSISVTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LL-AR 89 (162)
T ss_dssp HHHHHTTCSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GG-TT
T ss_pred HHHHhCCCCcEEEEEEEEchHHHHHHHHhhc----CceEEEeccCCchhhHHHHHHHHhhcccceeeccc-----cc-cc
Confidence 3444556678999999999999998888775 56888999987766554443 45678999993 33 34
Q ss_pred CCCCCCCcEEeecch
Q 047490 86 NMVYGDIKYLVLDEA 100 (323)
Q Consensus 86 ~~~~~~~~~vIiDE~ 100 (323)
.+.+.++++||.=+.
T Consensus 90 GiDi~~v~~VI~~d~ 104 (162)
T d1fuka_ 90 GIDVQQVSLVINYDL 104 (162)
T ss_dssp TCCCCSCSEEEESSC
T ss_pred cccCCCceEEEEecc
Confidence 567888888887443
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=95.02 E-value=0.016 Score=42.26 Aligned_cols=77 Identities=14% Similarity=0.224 Sum_probs=60.7
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcCCCCCCC
Q 047490 16 RRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDGNMVYGD 91 (323)
Q Consensus 16 ~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~~~~~~~ 91 (323)
++.++||.++++.-+..++..++.. ++++..++|+....++.+.+ .+..+|+|+|. +....+...+
T Consensus 30 ~~~~~iif~~~~~~~~~~~~~l~~~----g~~~~~~hg~~~~~eR~~~l~~Fr~g~~~vLVaTd------v~~rGiDip~ 99 (181)
T d1t5la2 30 RNERTLVTTLTKKMAEDLTDYLKEA----GIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGIN------LLREGLDIPE 99 (181)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHHTSCSEEEESC------CCSSSCCCTT
T ss_pred cCCeEEEEeehhhhhHHHHHHHHhC----CcceeEecCCccHHHHHHHHHHHHCCCCCEEEehh------HHHccCCCCC
Confidence 3668999999999998888888765 77999999998876655443 45689999992 2334678899
Q ss_pred CcEEeecchhh
Q 047490 92 IKYLVLDEADT 102 (323)
Q Consensus 92 ~~~vIiDE~h~ 102 (323)
+++||.-++..
T Consensus 100 v~~VI~~d~p~ 110 (181)
T d1t5la2 100 VSLVAILDADK 110 (181)
T ss_dssp EEEEEETTTTS
T ss_pred CCEEEEecCCc
Confidence 99999888763
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.64 E-value=0.021 Score=41.19 Aligned_cols=85 Identities=6% Similarity=0.106 Sum_probs=61.0
Q ss_pred hhhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHH
Q 047490 7 AMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHI 82 (323)
Q Consensus 7 ~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~ 82 (323)
++...+.+.++.++||-|.++.-+..++..++.. +..+..++|+....++...+ .+..+|+|+|..
T Consensus 22 ~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~----g~~~~~~h~~~~~~~r~~~~~~f~~~~~~ilv~Td~------ 91 (171)
T d1s2ma2 22 CLNTLFSKLQINQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDL------ 91 (171)
T ss_dssp HHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSC------
T ss_pred HHHHHHHhCCCCceEEEEeeeehhhHhHHhhhcc----cccccccccccchhhhhhhhhhcccCccccccchhH------
Confidence 3444445556779999999999999888888776 66888899887765544433 456789999942
Q ss_pred HcCCCCCCCCcEEeecchh
Q 047490 83 EDGNMVYGDIKYLVLDEAD 101 (323)
Q Consensus 83 ~~~~~~~~~~~~vIiDE~h 101 (323)
-...+.+.++++||.=+..
T Consensus 92 ~~~Gid~~~v~~VI~~d~p 110 (171)
T d1s2ma2 92 LTRGIDIQAVNVVINFDFP 110 (171)
T ss_dssp SSSSCCCTTEEEEEESSCC
T ss_pred hhhccccceeEEEEecCCc
Confidence 2345677888888865443
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.35 E-value=0.025 Score=40.67 Aligned_cols=83 Identities=8% Similarity=0.059 Sum_probs=57.4
Q ss_pred hhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHH
Q 047490 8 MLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIE 83 (323)
Q Consensus 8 ~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~ 83 (323)
+...+...++.++||.|+++.-+..+.+.|++. +..+..++|+....++...+ .+..+|+|+|- .+
T Consensus 18 L~~ll~~~~~~k~iIF~~~~~~~~~l~~~L~~~----~~~~~~ihg~~~~~~r~~~l~~F~~g~~~iLv~T~-----~~- 87 (168)
T d1t5ia_ 18 LFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LF- 87 (168)
T ss_dssp HHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS-----CC-
T ss_pred HHHHHHhCCCCeEEEEEeeeecchhhhhhhccc----cccccccccccchhhhhhhhhhhccccceeeeccc-----cc-
Confidence 333444445678999999999999888888775 56888999987765554433 45678999992 22
Q ss_pred cCCCCCCCCcEEeecch
Q 047490 84 DGNMVYGDIKYLVLDEA 100 (323)
Q Consensus 84 ~~~~~~~~~~~vIiDE~ 100 (323)
...+.+..+++||.=+.
T Consensus 88 ~~Gid~~~~~~vi~~~~ 104 (168)
T d1t5ia_ 88 GRGMDIERVNIAFNYDM 104 (168)
T ss_dssp STTCCGGGCSEEEESSC
T ss_pred cchhhcccchhhhhhhc
Confidence 23456667777776544
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=94.26 E-value=0.079 Score=36.50 Aligned_cols=68 Identities=15% Similarity=0.261 Sum_probs=49.6
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeChHHHHHHHHcCCCCCCCCcE
Q 047490 15 PRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEDGNMVYGDIKY 94 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~Tp~~l~~~~~~~~~~~~~~~~ 94 (323)
.++.++||.|+|+.-++++++.|++. ++.+..++++....... .+..+|+|+| +.+.++ +. .++++
T Consensus 33 ~~~~k~IVFc~t~~~ae~la~~L~~~----G~~~~~~H~~~~~~~~~---~~~~~vlvaT-----d~~~~G-iD-~~v~~ 98 (138)
T d1jr6a_ 33 IKGGRHLIFCHSKKKCDELAAKLVAL----GINAVAYYRGLDVSVIP---TNGDVVVVAT-----DALMTG-FT-GDFDS 98 (138)
T ss_dssp HTTSCEEEECSCHHHHHHHHHHHHHH----TCEEEEECTTCCSCCCT---TSSCEEEEES-----SSSCSS-SC-CCBSE
T ss_pred cCCCCEEEEeCcHHHHHHHHHHHhcc----ccchhhhhccchhhhhh---hhhcceeehh-----HHHHhc-cc-cccce
Confidence 44668999999999999999999876 66888888887654432 3456899999 333333 44 46777
Q ss_pred Ee
Q 047490 95 LV 96 (323)
Q Consensus 95 vI 96 (323)
||
T Consensus 99 Vi 100 (138)
T d1jr6a_ 99 VI 100 (138)
T ss_dssp EE
T ss_pred EE
Confidence 65
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.48 E-value=0.035 Score=39.86 Aligned_cols=81 Identities=10% Similarity=0.185 Sum_probs=58.5
Q ss_pred ccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHHcC
Q 047490 10 GVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIEDG 85 (323)
Q Consensus 10 ~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~~~ 85 (323)
..+.+.++.++||-|.++.-+..+++.++.. +..+..++|+.....+...+ .+..+|+|+| ..+ ..
T Consensus 27 ~ll~~~~~~k~iiF~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~fk~g~~~iLv~T-----d~~-~r 96 (168)
T d2j0sa2 27 DLYDTLTITQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLIST-----DVW-AR 96 (168)
T ss_dssp HHHHHHTSSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEEC-----GGG-SS
T ss_pred HHHHhCCCCceEEEeeeHHHHHHHHHHhhhc----ccchhhhhhhhhHHHHHHHHHHHhcCCccEEecc-----chh-cc
Confidence 3344455678999999999999988888776 55788888887766554433 3457899999 333 34
Q ss_pred CCCCCCCcEEeecch
Q 047490 86 NMVYGDIKYLVLDEA 100 (323)
Q Consensus 86 ~~~~~~~~~vIiDE~ 100 (323)
.+.+.++++||.=++
T Consensus 97 GiDi~~v~~VIn~d~ 111 (168)
T d2j0sa2 97 GLDVPQVSLIINYDL 111 (168)
T ss_dssp SCCCTTEEEEEESSC
T ss_pred cccccCcceEEEecC
Confidence 677888888876333
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=93.41 E-value=0.068 Score=37.67 Aligned_cols=80 Identities=15% Similarity=0.331 Sum_probs=55.6
Q ss_pred hhhccccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHH
Q 047490 7 AMLGVLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHI 82 (323)
Q Consensus 7 ~~~~~~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~ 82 (323)
++...+.. .+.++||-|++++-+.++++.++.. +..+..++++.....+...+ .+...|+|+|. .+
T Consensus 19 ~L~~ll~~-~~~k~IIF~~s~~~~~~l~~~L~~~----g~~~~~~~~~~~~~~r~~~~~~f~~~~~~ilv~T~-----~~ 88 (155)
T d1hv8a2 19 ALCRLLKN-KEFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VM 88 (155)
T ss_dssp HHHHHHCS-TTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----TH
T ss_pred HHHHHHcc-CCCCEEEEECchHHHHHHHhhhccc----ccccccccccchhhhhhhhhhhhhcccceeeeehh-----HH
Confidence 34444443 4568999999999999988888875 56888888887655543332 45678999993 23
Q ss_pred HcCCCCCCCCcEEee
Q 047490 83 EDGNMVYGDIKYLVL 97 (323)
Q Consensus 83 ~~~~~~~~~~~~vIi 97 (323)
.+ .+.+..+++||.
T Consensus 89 ~~-Gid~~~v~~Vi~ 102 (155)
T d1hv8a2 89 SR-GIDVNDLNCVIN 102 (155)
T ss_dssp HH-HCCCSCCSEEEE
T ss_pred hh-hhhhccCcEEEE
Confidence 22 456777888875
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=91.24 E-value=0.24 Score=38.90 Aligned_cols=54 Identities=7% Similarity=0.031 Sum_probs=39.6
Q ss_pred CccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCccccccCCCCCEEEeC
Q 047490 17 RPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQEDSLNNPIDMVVGT 74 (323)
Q Consensus 17 ~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Iii~T 74 (323)
+.+++|.||+..-++++++.+++. +.++..++|............+..+|+|+|
T Consensus 36 ~g~~~~F~~s~~~~~~~a~~L~~~----g~~V~~l~~~~~~~e~~~~~~~~~~~~~~t 89 (299)
T d1yksa2 36 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFEREYPTIKQKKPDFILAT 89 (299)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC--------CCCSEEEES
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc----CCeEEEEcCcCcHhHHhhhhcCCcCEEEEe
Confidence 568999999999999999999886 457888998877666555556667999999
|
| >d2eyqa2 c.37.1.19 (A:349-465) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=90.39 E-value=0.37 Score=31.82 Aligned_cols=75 Identities=15% Similarity=0.181 Sum_probs=55.0
Q ss_pred HHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCCHHHHHHHHHhccccCCCCCEEEEecccccc
Q 047490 184 LEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVPAQERVENLNKFKNEDGDCPTLVCTDLAARG 263 (323)
Q Consensus 184 ~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~g~~~ilv~t~~~~~G 263 (323)
.+.|...+.+ .+.++|++|.+...++.+.+.|++.++.+..+.+ . .+|.. +. +.|+...+..|
T Consensus 23 ~~~L~~~i~~---~~~~Vli~a~s~g~~erl~e~L~~~~i~~~~~~~-~---------~~~~~--~~--~~i~~~~l~~G 85 (117)
T d2eyqa2 23 LDALRKFLET---FDGPVVFSVESEGRREALGELLARIKIAPQRIMR-L---------DEASD--RG--RYLMIGAAEHG 85 (117)
T ss_dssp THHHHHHHTT---CCSCCCEEESSHHHHHHHHHHHGGGTCCCEECSS-G---------GGCCT--TC--CEEEECCCCSC
T ss_pred HHHHHHHHHh---CCCeEEEEECCccHHHHHHHHHHHcCCCceEecC-h---------hhhcC--ce--EEEEEecCccc
Confidence 4556666654 3568999999999999999999999887765433 1 13433 44 56777889999
Q ss_pred cCC-CCCEEEEcC
Q 047490 264 LDL-DVDHVIMFD 275 (323)
Q Consensus 264 id~-~~~~vi~~~ 275 (323)
+-+ +...+|+.+
T Consensus 86 F~~~~~~l~vItE 98 (117)
T d2eyqa2 86 FVDTVRNLALICE 98 (117)
T ss_dssp EEETTTTEEEEEH
T ss_pred cccCCCCEEEEEc
Confidence 988 788888754
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.76 E-value=1.4 Score=32.54 Aligned_cols=93 Identities=12% Similarity=0.100 Sum_probs=59.7
Q ss_pred eccCChhHHH-HHHHHhccCC--CCCCeEEEEecCcccHHHHHHHHhhC----CCeeEEecCCCCHHHHHHHHHhccccC
Q 047490 176 KLSGSENKLE-ALLQVLEPSL--SKGNKVMVFCNTLNSSRAVDHFLNEN----QISTVNYHGEVPAQERVENLNKFKNED 248 (323)
Q Consensus 176 ~~~~~~~k~~-~l~~~l~~~~--~~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~ 248 (323)
....+..|.- .++.++.... ....+.+|++++++.|..+++.++.. +..+..+.|+.+.......++ .
T Consensus 60 ~a~TGSGKTlayllPil~~l~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~g~~~~~~~~~~l~---~-- 134 (222)
T d2j0sa1 60 QSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD---Y-- 134 (222)
T ss_dssp ECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHH---H--
T ss_pred EcCcchhhhhhhcccccccccccccCceeEEecchHHHHHHHHHHHHHHhCccceeEEEEeecccchhhHHHhc---c--
Confidence 3344455543 4444444322 23357899999999999998877543 567778888887665544442 2
Q ss_pred CCCCEEEEecc------cccccCC-CCCEEEEc
Q 047490 249 GDCPTLVCTDL------AARGLDL-DVDHVIMF 274 (323)
Q Consensus 249 g~~~ilv~t~~------~~~Gid~-~~~~vi~~ 274 (323)
...|+|+|+- ....+++ ++.++|.=
T Consensus 135 -~~~Ilv~TPgrl~~~~~~~~~~~~~l~~lVlD 166 (222)
T d2j0sa1 135 -GQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLD 166 (222)
T ss_dssp -CCSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred -CCeEEeCCCCcHHhcccccccccccceeeeec
Confidence 2469999962 2445677 78888863
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=88.23 E-value=0.61 Score=34.97 Aligned_cols=93 Identities=16% Similarity=0.196 Sum_probs=58.0
Q ss_pred ccCChhHHHHHHHHhccCCCCCCeEEEEecCcccHHHHHHHHhhC----CC----eeEEecCCCCHHHHHHHHHhccccC
Q 047490 177 LSGSENKLEALLQVLEPSLSKGNKVMVFCNTLNSSRAVDHFLNEN----QI----STVNYHGEVPAQERVENLNKFKNED 248 (323)
Q Consensus 177 ~~~~~~k~~~l~~~l~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~----~~----~~~~~~~~~~~~~r~~~~~~f~~~~ 248 (323)
.+.+..|....+-.......++.++++.+|++..+...++.+++. +. ....+++..+...+...+.....
T Consensus 65 apTGsGKT~~~~~~~~~~~~~~~rvliv~Pt~~La~Q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-- 142 (237)
T d1gkub1 65 APTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-- 142 (237)
T ss_dssp CCBTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--
T ss_pred ecCCChHHHHHHHHHHHHHHhcCeEEEEeccHHHHHHHHHHHHHHHHHcCCceEEEEeeeecccchhhhhhhhccccc--
Confidence 344555554332222222245789999999999999988877652 22 23456777777777766665553
Q ss_pred CCCCEEEEecc-cccc-cCC-CCCEEEE
Q 047490 249 GDCPTLVCTDL-AARG-LDL-DVDHVIM 273 (323)
Q Consensus 249 g~~~ilv~t~~-~~~G-id~-~~~~vi~ 273 (323)
..|+|+|+- +... .++ ++++||.
T Consensus 143 --~~Ilv~Tp~~l~~~~~~~~~~~~vVv 168 (237)
T d1gkub1 143 --FKIVITTTQFLSKHYRELGHFDFIFV 168 (237)
T ss_dssp --CSEEEEEHHHHHHCSTTSCCCSEEEE
T ss_pred --cceeccChHHHHHhhhhcCCCCEEEE
Confidence 358999953 3333 345 7887776
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=86.83 E-value=2.1 Score=31.13 Aligned_cols=92 Identities=16% Similarity=0.181 Sum_probs=59.4
Q ss_pred ccCChhHHHHHH-HHhccC-CCCCCeEEEEecCcccHHHHHHHHhhC----CCeeEEecCCCCHHHHHHHHHhccccCCC
Q 047490 177 LSGSENKLEALL-QVLEPS-LSKGNKVMVFCNTLNSSRAVDHFLNEN----QISTVNYHGEVPAQERVENLNKFKNEDGD 250 (323)
Q Consensus 177 ~~~~~~k~~~l~-~~l~~~-~~~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~g~ 250 (323)
.+.+..|.-... ..+... ...+.+++|.|+++..|..+.+.++.. +..+...+|+.+..++.+.+ +.
T Consensus 49 a~TGsGKT~~~~l~~~~~~~~~~~~~~lil~pt~~l~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l---~~---- 121 (208)
T d1hv8a1 49 ARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKAL---KN---- 121 (208)
T ss_dssp CCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHH---HT----
T ss_pred chhcccccceeecccccccccccCcceEEEeeccccchhhhhhhhhhcccCCeEEEEeeCCCChHHHHHhc---CC----
Confidence 344555554333 332222 235568999999999999988777653 66778888988766654433 22
Q ss_pred CCEEEEecc-----c-ccccCC-CCCEEEEcC
Q 047490 251 CPTLVCTDL-----A-ARGLDL-DVDHVIMFD 275 (323)
Q Consensus 251 ~~ilv~t~~-----~-~~Gid~-~~~~vi~~~ 275 (323)
.+|+|+|+- + ...+++ ++.++|.=+
T Consensus 122 ~~IlV~TP~~l~~~l~~~~~~~~~l~~lViDE 153 (208)
T d1hv8a1 122 ANIVVGTPGRILDHINRGTLNLKNVKYFILDE 153 (208)
T ss_dssp CSEEEECHHHHHHHHHTTCSCTTSCCEEEEET
T ss_pred CCEEEEChHHHHHHHHcCCCCcccCcEEEEEC
Confidence 469999952 2 334678 888887743
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=85.96 E-value=0.42 Score=35.39 Aligned_cols=115 Identities=12% Similarity=0.168 Sum_probs=62.9
Q ss_pred EEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCcc-------ccccCCCCCEEEeChHHHHHHHHc----C----
Q 047490 21 VVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRPQ-------EDSLNNPIDMVVGTPGRILQHIED----G---- 85 (323)
Q Consensus 21 lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~Iii~Tp~~l~~~~~~----~---- 85 (323)
.++.|...++.++.+.+-+.... ..+...++|....... ......+..+++.+...+...+.. +
T Consensus 12 F~vg~~N~~a~~~~~~~~~~~~~-~~n~l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (213)
T d1l8qa2 12 FIVGEGNRLAYEVVKEALENLGS-LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINE 90 (213)
T ss_dssp CCCCTTTHHHHHHHHHHHHTTTT-SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHH
T ss_pred ccCCCcHHHHHHHHHHHHhCcCC-CCCcEEEECCCCCcHHHHHHHHHHHhccCccceEEechHHHHHHHHHHHHccchhh
Confidence 35577788887777776554322 3345678887665432 111123456777777666443321 1
Q ss_pred -CCCCCCCcEEeecchhhhhcCC-ChhhHHHHHhhhccccCCCCCCCceEEEEEeecchh
Q 047490 86 -NMVYGDIKYLVLDEADTMFDRG-FGPDIRKFLVPLKNRASKPNGQGFQTVLVSATMTKA 143 (323)
Q Consensus 86 -~~~~~~~~~vIiDE~h~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~i~~sat~~~~ 143 (323)
...+...+++++|++|.+.... ....+-.++..+.... .++|+.|..+|..
T Consensus 91 ~~~~~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~-------~~iiits~~~p~~ 143 (213)
T d1l8qa2 91 FRNMYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLE-------KQIILASDRHPQK 143 (213)
T ss_dssp HHHHHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTT-------CEEEEEESSCGGG
T ss_pred HHHHHhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhcc-------ceEEEecCCcchh
Confidence 1124578999999999886532 2223344444443321 2555555544433
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=84.42 E-value=0.12 Score=38.31 Aligned_cols=83 Identities=14% Similarity=0.277 Sum_probs=51.6
Q ss_pred CCCccEEEEcCCHHHHHH-----HHHHHHHhccc--cceeEEEeecCccCCcccccc----CCCCCEEEeChHHHHHHHH
Q 047490 15 PRRPRAVVLCPTRELSEQ-----VFRVAKSISHH--ARFRSTMVSGGGRLRPQEDSL----NNPIDMVVGTPGRILQHIE 83 (323)
Q Consensus 15 ~~~~~~lvl~P~~~L~~q-----~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~Iii~Tp~~l~~~~~ 83 (323)
.++.++.|+||..+=... ..+....+... .+.++..++|.....+....+ .+..+|+|||. +-
T Consensus 27 ~~g~QvyvVcP~Ieese~~~~~~~~e~~~~l~~~~~p~~~v~~lHG~m~~~eke~~m~~F~~g~~~iLVaTt------Vi 100 (206)
T d1gm5a4 27 MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTT------VI 100 (206)
T ss_dssp TTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSS------CC
T ss_pred HcCCCEEEEEeeecccccccchhhHHHHHHHHHhcCCCCeEEEEeecccHHHHHHHHHHHHCCCEEEEEEeh------hh
Confidence 356789999997542211 11222222211 256788899998877665443 45689999993 33
Q ss_pred cCCCCCCCCcEEeecchhhh
Q 047490 84 DGNMVYGDIKYLVLDEADTM 103 (323)
Q Consensus 84 ~~~~~~~~~~~vIiDE~h~~ 103 (323)
...+...+..++|+.++++.
T Consensus 101 E~GIDip~a~~iii~~a~~f 120 (206)
T d1gm5a4 101 EVGIDVPRANVMVIENPERF 120 (206)
T ss_dssp CSCSCCTTCCEEEBCSCSSS
T ss_pred hccccccCCcEEEEEccCCc
Confidence 45678899999999999854
|
| >d1tq1a_ c.46.1.3 (A:) Thiosulfate sulfurtransferase/Senescence-associated protein {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Rhodanese/Cell cycle control phosphatase superfamily: Rhodanese/Cell cycle control phosphatase family: Single-domain sulfurtransferase domain: Thiosulfate sulfurtransferase/Senescence-associated protein species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=84.36 E-value=0.5 Score=31.20 Aligned_cols=40 Identities=13% Similarity=0.164 Sum_probs=33.2
Q ss_pred CCCCCCeEEEEecCcccHHHHHHHHhhCCC-eeEEecCCCC
Q 047490 194 SLSKGNKVMVFCNTLNSSRAVDHFLNENQI-STVNYHGEVP 233 (323)
Q Consensus 194 ~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~ 233 (323)
...+..++++||++-..+...+..|.+.|+ .+..+.|++.
T Consensus 68 ~~~~~~~iv~~C~~G~rs~~a~~~L~~~G~~nv~~l~GG~~ 108 (119)
T d1tq1a_ 68 HFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 108 (119)
T ss_dssp TCCTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred hcCCCcEEEEEcCCcCcHHHHHHHHHhcccCCeEEecChHH
Confidence 345678999999998889999999998887 5888889864
|
| >d1yt8a4 c.46.1.2 (A:243-372) Thiosulfate sulfurtransferase PA2603 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Rhodanese/Cell cycle control phosphatase superfamily: Rhodanese/Cell cycle control phosphatase family: Multidomain sulfurtransferase (rhodanese) domain: Thiosulfate sulfurtransferase PA2603 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=83.46 E-value=0.83 Score=30.61 Aligned_cols=37 Identities=8% Similarity=0.121 Sum_probs=33.4
Q ss_pred CCCeEEEEecCcccHHHHHHHHhhCCCeeEEecCCCC
Q 047490 197 KGNKVMVFCNTLNSSRAVDHFLNENQISTVNYHGEVP 233 (323)
Q Consensus 197 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 233 (323)
+..++++||.+-..+...+..|++.|+.+..+.|++.
T Consensus 79 ~~~~ivl~C~~G~rS~~aa~~L~~~G~~v~~l~GG~~ 115 (130)
T d1yt8a4 79 RGARLVLVDDDGVRANMSASWLAQMGWQVAVLDGLSE 115 (130)
T ss_dssp BTCEEEEECSSSSHHHHHHHHHHHTTCEEEEECSCCG
T ss_pred ccceEEeecCCCccHHHHHHHHHHcCCCeEEEcCchH
Confidence 5679999999988999999999999999989999875
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=82.21 E-value=1.9 Score=33.10 Aligned_cols=79 Identities=14% Similarity=0.199 Sum_probs=52.0
Q ss_pred ccCCCCccEEEEcCCHHHHHHHHHHHHHhccccceeEEEeecCccCCc--------cccc---c-CCCCCEEEeChHHHH
Q 047490 12 LMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRSTMVSGGGRLRP--------QEDS---L-NNPIDMVVGTPGRIL 79 (323)
Q Consensus 12 ~~~~~~~~~lvl~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~---~-~~~~~Iii~Tp~~l~ 79 (323)
+...++.++||.+.+++-+..+++.+.+. +++...+.|...... +... + .+.++|+|+|
T Consensus 156 ~~~~~~~k~iiF~~~~~~~~~~~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F~~g~~~vLv~T----- 226 (286)
T d1wp9a2 156 LQRKQNSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVAT----- 226 (286)
T ss_dssp HHHCTTCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEEC-----
T ss_pred HHhCCCCcEEEEeCcHHhHHHHHHHHHHc----CCceEEeeccccccccchhchHHHHHHHHHHHcCCCcEEEEc-----
Confidence 34566789999999999999888888764 456666766533221 1111 1 2457899999
Q ss_pred HHHHcCCCCCCCCcEEeecch
Q 047490 80 QHIEDGNMVYGDIKYLVLDEA 100 (323)
Q Consensus 80 ~~~~~~~~~~~~~~~vIiDE~ 100 (323)
+... ..+.+.++++||.=+.
T Consensus 227 ~~~~-~Gld~~~~~~Vi~~d~ 246 (286)
T d1wp9a2 227 SVGE-EGLDVPEVDLVVFYEP 246 (286)
T ss_dssp GGGG-GGGGSTTCCEEEESSC
T ss_pred ccee-ccccCCCCCEEEEeCC
Confidence 3333 3567888998886443
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.19 E-value=5.8 Score=28.61 Aligned_cols=97 Identities=19% Similarity=0.242 Sum_probs=59.2
Q ss_pred EEeccCChhHHH-HHHHHhccCC--CCCCeEEEEecCcccHHHHHHHHhhC-----CCeeEEecCCCCHHHHHHHHHhcc
Q 047490 174 FIKLSGSENKLE-ALLQVLEPSL--SKGNKVMVFCNTLNSSRAVDHFLNEN-----QISTVNYHGEVPAQERVENLNKFK 245 (323)
Q Consensus 174 ~~~~~~~~~k~~-~l~~~l~~~~--~~~~~~lvf~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~r~~~~~~f~ 245 (323)
......+..|.- .++.++.... ..+.+++|.+++++.+..+.+.++.. .......+|+.+.......+ .
T Consensus 42 l~~A~TGsGKTla~~lp~l~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l---~ 118 (207)
T d1t6na_ 42 LCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL---K 118 (207)
T ss_dssp EEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHH---H
T ss_pred EEEeccccccccccccceeeeecccCCCceEEEEeccchhhHHHHHHHHHHHhhCCCceeEEEeccccHHHHHHHH---H
Confidence 333444555554 3334443322 23357999999999999888877653 23566778887755544332 2
Q ss_pred ccCCCCCEEEEecc-----cc-cccCC-CCCEEEEcC
Q 047490 246 NEDGDCPTLVCTDL-----AA-RGLDL-DVDHVIMFD 275 (323)
Q Consensus 246 ~~~g~~~ilv~t~~-----~~-~Gid~-~~~~vi~~~ 275 (323)
+ ...+|+|+|+- +. ..+++ ++.++|.-+
T Consensus 119 ~--~~~~ilI~TP~rl~~~~~~~~~~l~~l~~lVlDE 153 (207)
T d1t6na_ 119 K--NCPHIVVGTPGRILALARNKSLNLKHIKHFILDE 153 (207)
T ss_dssp H--SCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEES
T ss_pred h--cCCCEEEeCcchhhhhccCCceeccccceeehhh
Confidence 2 44579999973 22 34677 888888644
|