Citrus Sinensis ID: 047539

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-------
Protein Sequence
MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHccccHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
mqasdrfnINSQLEHLQAKyvgtghadlnRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKmllpcglpperedd
Flexible Loop (DISEMBL)
mqasdrfnINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLlpcglpperedd
Low Complexity Region (SEG)
MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
Disordered region (IsUnstruct)
************LEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCG********
Disordered Region (DISOPRED)
****DRF*INSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKML************
Disordered Region (DISEMBL)
MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
Disordered Region (DISPRO)
***SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLP******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	87	2.2.26 [Sep-21-2011]
Q9LW64	87	Uncharacterized protein A	yes	no	1.0	1.0	0.942	1e-44
P58728	87	Uncharacterized protein A	yes	no	1.0	1.0	0.942	1e-44
Q9VHI4	85	Probable splicing factor	yes	no	0.954	0.976	0.638	3e-27
Q9BWJ5	86	Splicing factor 3B subuni	yes	no	0.965	0.976	0.595	4e-26
Q56K13	86	Splicing factor 3B subuni	yes	no	0.965	0.976	0.595	4e-26
Q923D4	86	Splicing factor 3B subuni	yes	no	0.965	0.976	0.583	6e-25
Q55BF5	94	Splicing factor 3B subuni	yes	no	0.965	0.893	0.559	9e-24
Q9P7R6	85	Uncharacterized protein C	yes	no	0.908	0.929	0.455	1e-16

>sp|Q9LW64|SF3BA_ARATH Uncharacterized protein At3g23325 OS=Arabidopsis thaliana GN=At3g23325 PE=3 SV=1

 Score =  178 bits (451), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 82/87 (94%), Positives = 85/87 (97%)

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASYIGHYPML+YFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWTVNIQRDSYASYIGHYPMLSYFAIAEN 60

Query: 61 ESIGREHYNFMQKMLLPCGLPPEREDD 87
          ESIGRE YNFMQKMLLPCGLPPERED+
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDE 87

Arabidopsis thaliana (taxid: 3702)

>sp|P58728|SF3BB_ARATH Uncharacterized protein At4g14342 OS=Arabidopsis thaliana GN=At4g14342 PE=3 SV=1

 Score =  177 bits (450), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 82/87 (94%), Positives = 86/87 (98%)

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASYIGHYPML+YFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAEN 60

Query: 61 ESIGREHYNFMQKMLLPCGLPPEREDD 87
          ESIGRE YNFMQKMLLPCGLPPERE++
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREEE 87

Arabidopsis thaliana (taxid: 3702)

>sp|Q9VHI4|SF3B5_DROME Probable splicing factor 3B subunit 5 OS=Drosophila melanogaster GN=CG11985 PE=1 SV=1

 Score =  120 bits (301), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 53/83 (63%), Positives = 66/83 (79%)

Query: 5  DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIG 64
          +R+NI+SQLEHLQ+KY+GTGHAD  +FEW  N  RDS ASY+GHY +L YFAIAENES  
Sbjct: 3  ERYNIHSQLEHLQSKYIGTGHADTTKFEWLTNQHRDSLASYMGHYDILNYFAIAENESKA 62

Query: 65 REHYNFMQKMLLPCGLPPEREDD 87
          R  +N M++ML PCG PPE+ +D
Sbjct: 63 RVRFNLMERMLQPCGPPPEKLED 85

Drosophila melanogaster (taxid: 7227)

>sp|Q9BWJ5|SF3B5_HUMAN Splicing factor 3B subunit 5 OS=Homo sapiens GN=SF3B5 PE=1 SV=1

 Score =  116 bits (290), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 50/84 (59%), Positives = 66/84 (78%)

Query: 4  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESI 63
          +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES 
Sbjct: 2  TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESK 61

Query: 64 GREHYNFMQKMLLPCGLPPEREDD 87
           R  +N M+KML PCG P ++ ++
Sbjct: 62 ARVRFNLMEKMLQPCGPPADKPEE 85

Homo sapiens (taxid: 9606)

>sp|Q56K13|SF3B5_BOVIN Splicing factor 3B subunit 5 OS=Bos taurus GN=SF3B5 PE=3 SV=1

 Score =  116 bits (290), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 50/84 (59%), Positives = 66/84 (78%)

Query: 4  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESI 63
          +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES 
Sbjct: 2  TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESK 61

Query: 64 GREHYNFMQKMLLPCGLPPEREDD 87
           R  +N M+KML PCG P ++ ++
Sbjct: 62 ARVRFNLMEKMLQPCGPPADKPEE 85

Bos taurus (taxid: 9913)

>sp|Q923D4|SF3B5_MOUSE Splicing factor 3B subunit 5 OS=Mus musculus GN=Sf3b5 PE=2 SV=1

 Score =  112 bits (280), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 49/84 (58%), Positives = 65/84 (77%)

Query: 4  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESI 63
          +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES 
Sbjct: 2  TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESK 61

Query: 64 GREHYNFMQKMLLPCGLPPEREDD 87
           R  +N M+KML P G P ++ ++
Sbjct: 62 ARVRFNLMEKMLQPSGPPADKPEE 85

Mus musculus (taxid: 10090)

>sp|Q55BF5|SF3B5_DICDI Splicing factor 3B subunit 5 OS=Dictyostelium discoideum GN=sf3b5 PE=3 SV=1

 Score =  108 bits (270), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 47/84 (55%), Positives = 64/84 (76%)

Query: 4  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESI 63
          S+R ++NSQLEHLQ +YVGTGHAD+++ EW  N  RDS +S+IGH   L+ F+IAENES+
Sbjct: 2  SERESLNSQLEHLQMRYVGTGHADISKHEWLTNQHRDSLSSFIGHSSFLSLFSIAENESV 61

Query: 64 GREHYNFMQKMLLPCGLPPEREDD 87
          GR  YN + KM+ PCG  P+ +D+
Sbjct: 62 GRVRYNTLTKMISPCGPAPKIKDN 85

Dictyostelium discoideum (taxid: 44689)

>sp|Q9P7R6|YHV5_SCHPO Uncharacterized protein C211.05 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC211.05 PE=3 SV=1

 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 36/79 (45%), Positives = 52/79 (65%)

Query: 4  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESI 63
          +DR    ++LE LQA+YVG G+A   ++EW VN  RD+ +S +GH P+LAY A A  E  
Sbjct: 2  ADRLRSQAKLEQLQARYVGVGNAFTTKYEWMVNQHRDTLSSVVGHPPLLAYMATALGEPR 61

Query: 64 GREHYNFMQKMLLPCGLPP 82
           +   N ++KM++PCG PP
Sbjct: 62 VQVRKNLLEKMIMPCGPPP 80

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	87
449432544	87	PREDICTED: uncharacterized protein At3g2	1.0	1.0	0.977	7e-45
224099925	87	predicted protein [Populus trichocarpa]	1.0	1.0	0.977	2e-44
255575885	87	Splicing factor 3B subunit, putative [Ri	1.0	1.0	0.977	2e-44
225433167	87	PREDICTED: uncharacterized protein At3g2	1.0	1.0	0.965	3e-44
224107437	87	predicted protein [Populus trichocarpa]	1.0	1.0	0.965	5e-44
449433720	87	PREDICTED: uncharacterized protein At3g2	1.0	1.0	0.954	6e-44
297726259	117	Os08g0278966 [Oryza sativa Japonica Grou	1.0	0.743	0.954	1e-43
116779103	87	unknown [Picea sitchensis] gi|116780938|	1.0	1.0	0.942	1e-43
115476652	87	Os08g0444100 [Oryza sativa Japonica Grou	1.0	1.0	0.954	2e-43
297800812	87	hypothetical protein ARALYDRAFT_493471 [	1.0	1.0	0.954	2e-43

>gi|449432544|ref|XP_004134059.1| PREDICTED: uncharacterized protein At3g23325-like [Cucumis sativus]

 Score =  184 bits (467), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 85/87 (97%), Positives = 87/87 (100%)

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASY+GHYP+LAYFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60

Query: 61 ESIGREHYNFMQKMLLPCGLPPEREDD 87
          ESIGREHYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGREHYNFMQKMLLPCGLPPEREDD 87

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099925|ref|XP_002311676.1| predicted protein [Populus trichocarpa] gi|118483982|gb|ABK93878.1| unknown [Populus trichocarpa] gi|222851496|gb|EEE89043.1| predicted protein [Populus trichocarpa]

 Score =  182 bits (462), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 85/87 (97%), Positives = 86/87 (98%)

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFA+AEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFALAEN 60

Query: 61 ESIGREHYNFMQKMLLPCGLPPEREDD 87
          ESIGRE YNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575885|ref|XP_002528840.1| Splicing factor 3B subunit, putative [Ricinus communis] gi|223531752|gb|EEF33574.1| Splicing factor 3B subunit, putative [Ricinus communis]

 Score =  182 bits (462), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 85/87 (97%), Positives = 86/87 (98%)

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDS+ASYIGHYPMLAYFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSFASYIGHYPMLAYFAIAEN 60

Query: 61 ESIGREHYNFMQKMLLPCGLPPEREDD 87
          ESIGRE YNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433167|ref|XP_002285284.1| PREDICTED: uncharacterized protein At3g23325 [Vitis vinifera] gi|296083670|emb|CBI23659.3| unnamed protein product [Vitis vinifera]

 Score =  182 bits (461), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 84/87 (96%), Positives = 86/87 (98%)

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASY+GHYP+LAYFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPLLAYFAIAEN 60

Query: 61 ESIGREHYNFMQKMLLPCGLPPEREDD 87
          ESIGRE YNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107437|ref|XP_002314479.1| predicted protein [Populus trichocarpa] gi|118485228|gb|ABK94474.1| unknown [Populus trichocarpa] gi|222863519|gb|EEF00650.1| predicted protein [Populus trichocarpa]

 Score =  181 bits (459), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 84/87 (96%), Positives = 86/87 (98%)

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASY+GHYPMLAYFA+AEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYMGHYPMLAYFALAEN 60

Query: 61 ESIGREHYNFMQKMLLPCGLPPEREDD 87
          ESIGRE YNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433720|ref|XP_004134645.1| PREDICTED: uncharacterized protein At3g23325-like [Cucumis sativus] gi|449508568|ref|XP_004163349.1| PREDICTED: uncharacterized protein At3g23325-like [Cucumis sativus] gi|307136184|gb|ADN34023.1| splicing factor 3b subunit [Cucumis melo subsp. melo]

 Score =  181 bits (459), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 83/87 (95%), Positives = 86/87 (98%)

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASY+GHYP+LAYFA+AEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAEN 60

Query: 61 ESIGREHYNFMQKMLLPCGLPPEREDD 87
          ESIGRE YNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297726259|ref|NP_001175493.1| Os08g0278966 [Oryza sativa Japonica Group] gi|255678317|dbj|BAH94221.1| Os08g0278966 [Oryza sativa Japonica Group]

 Score =  180 bits (456), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 83/87 (95%), Positives = 86/87 (98%)

Query: 1   MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAEN 60
           MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWA+NIQRDSYASYIGHYP+LAYFAIAEN
Sbjct: 31  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWALNIQRDSYASYIGHYPVLAYFAIAEN 90

Query: 61  ESIGREHYNFMQKMLLPCGLPPEREDD 87
           ESIGRE YNFMQKMLLPCGLPPERE+D
Sbjct: 91  ESIGRERYNFMQKMLLPCGLPPEREED 117

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116779103|gb|ABK21141.1| unknown [Picea sitchensis] gi|116780938|gb|ABK21889.1| unknown [Picea sitchensis] gi|116784251|gb|ABK23273.1| unknown [Picea sitchensis] gi|224284968|gb|ACN40213.1| unknown [Picea sitchensis]

 Score =  179 bits (455), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 82/87 (94%), Positives = 86/87 (98%)

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASY+GHYP+LAYFA+AEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPLLAYFAVAEN 60

Query: 61 ESIGREHYNFMQKMLLPCGLPPEREDD 87
          ESIGRE YNFMQKMLLPCGLPPERE+D
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREED 87

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115476652|ref|NP_001061922.1| Os08g0444100 [Oryza sativa Japonica Group] gi|42407437|dbj|BAD10044.1| splicing factor 3B subunit 5-like protein [Oryza sativa Japonica Group] gi|113623891|dbj|BAF23836.1| Os08g0444100 [Oryza sativa Japonica Group] gi|215707157|dbj|BAG93617.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  179 bits (454), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 83/87 (95%), Positives = 86/87 (98%)

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYF+IAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFSIAEN 60

Query: 61 ESIGREHYNFMQKMLLPCGLPPEREDD 87
          ESIGRE YNFMQKMLLPCGLPPER++D
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPERDED 87

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297800812|ref|XP_002868290.1| hypothetical protein ARALYDRAFT_493471 [Arabidopsis lyrata subsp. lyrata] gi|297314126|gb|EFH44549.1| hypothetical protein ARALYDRAFT_493471 [Arabidopsis lyrata subsp. lyrata]

 Score =  179 bits (454), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 83/87 (95%), Positives = 86/87 (98%)

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASYIGHYPML+YFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAEN 60

Query: 61 ESIGREHYNFMQKMLLPCGLPPEREDD 87
          ESIGRE YNFMQKMLLPCGLPPERED+
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDE 87

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	87
TAIR|locus:1005716320	87	AT4G14342 "AT4G14342" [Arabido	1.0	1.0	0.942	4e-42
TAIR|locus:505006364	87	AT3G23325 "AT3G23325" [Arabido	1.0	1.0	0.942	4e-42
FB|FBgn0040534	85	CG11985 [Drosophila melanogast	0.954	0.976	0.638	1.2e-26
UNIPROTKB|E1C5A2	86	SF3B5 "Uncharacterized protein	0.965	0.976	0.607	6.6e-26
UNIPROTKB|Q56K13	86	SF3B5 "Splicing factor 3B subu	0.965	0.976	0.595	1.8e-25
UNIPROTKB|Q9BWJ5	86	SF3B5 "Splicing factor 3B subu	0.965	0.976	0.595	1.8e-25
MGI|MGI:1913375	86	Sf3b5 "splicing factor 3b, sub	0.965	0.976	0.583	2e-24
RGD|1586993	86	Sf3b5 "splicing factor 3b, sub	0.965	0.976	0.583	2e-24
DICTYBASE|DDB_G0271312	94	sf3b5 "splicing factor 3B subu	0.965	0.893	0.559	1.3e-22
POMBASE|SPBC211.05	85	sab10 "splicing factor 3B (pre	0.908	0.929	0.455	1.3e-15

TAIR|locus:1005716320 AT4G14342 "AT4G14342" [Arabidopsis thaliana (taxid:3702)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 82/87 (94%), Positives = 86/87 (98%)

Query:     1 MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAEN 60
             MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASYIGHYPML+YFAIAEN
Sbjct:     1 MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAEN 60

Query:    61 ESIGREHYNFMQKMLLPCGLPPEREDD 87
             ESIGRE YNFMQKMLLPCGLPPERE++
Sbjct:    61 ESIGRERYNFMQKMLLPCGLPPEREEE 87

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:505006364 AT3G23325 "AT3G23325" [Arabidopsis thaliana (taxid:3702)]

 Score = 446 (162.1 bits), Expect = 4.0e-42, P = 4.0e-42
 Identities = 82/87 (94%), Positives = 85/87 (97%)

Query:     1 MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAEN 60
             MQASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASYIGHYPML+YFAIAEN
Sbjct:     1 MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWTVNIQRDSYASYIGHYPMLSYFAIAEN 60

Query:    61 ESIGREHYNFMQKMLLPCGLPPEREDD 87
             ESIGRE YNFMQKMLLPCGLPPERED+
Sbjct:    61 ESIGRERYNFMQKMLLPCGLPPEREDE 87

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0006397 "mRNA processing" evidence=ISS

FB|FBgn0040534 CG11985 [Drosophila melanogaster (taxid:7227)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 53/83 (63%), Positives = 66/83 (79%)

Query:     5 DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIG 64
             +R+NI+SQLEHLQ+KY+GTGHAD  +FEW  N  RDS ASY+GHY +L YFAIAENES  
Sbjct:     3 ERYNIHSQLEHLQSKYIGTGHADTTKFEWLTNQHRDSLASYMGHYDILNYFAIAENESKA 62

Query:    65 REHYNFMQKMLLPCGLPPEREDD 87
             R  +N M++ML PCG PPE+ +D
Sbjct:    63 RVRFNLMERMLQPCGPPPEKLED 85

GO:0005634 "nucleus" evidence=ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0071011 "precatalytic spliceosome" evidence=IDA

GO:0005686 "U2 snRNP" evidence=IDA

UNIPROTKB|E1C5A2 SF3B5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 51/84 (60%), Positives = 66/84 (78%)

Query:     4 SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESI 63
             +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES 
Sbjct:     2 TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESK 61

Query:    64 GREHYNFMQKMLLPCGLPPEREDD 87
              R  +N M+KML PCG P ++ D+
Sbjct:    62 ARVRFNLMEKMLQPCGPPADKPDE 85

GO:0005689 "U12-type spliceosomal complex" evidence=IEA

UNIPROTKB|Q56K13 SF3B5 "Splicing factor 3B subunit 5" [Bos taurus (taxid:9913)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 50/84 (59%), Positives = 66/84 (78%)

Query:     4 SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESI 63
             +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES 
Sbjct:     2 TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESK 61

Query:    64 GREHYNFMQKMLLPCGLPPEREDD 87
              R  +N M+KML PCG P ++ ++
Sbjct:    62 ARVRFNLMEKMLQPCGPPADKPEE 85

GO:0005689 "U12-type spliceosomal complex" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

UNIPROTKB|Q9BWJ5 SF3B5 "Splicing factor 3B subunit 5" [Homo sapiens (taxid:9606)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 50/84 (59%), Positives = 66/84 (78%)

Query:     4 SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESI 63
             +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES 
Sbjct:     2 TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESK 61

Query:    64 GREHYNFMQKMLLPCGLPPEREDD 87
              R  +N M+KML PCG P ++ ++
Sbjct:    62 ARVRFNLMEKMLQPCGPPADKPEE 85

GO:0005689 "U12-type spliceosomal complex" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0008380 "RNA splicing" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

MGI|MGI:1913375 Sf3b5 "splicing factor 3b, subunit 5" [Mus musculus (taxid:10090)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 49/84 (58%), Positives = 65/84 (77%)

Query:     4 SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESI 63
             +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES 
Sbjct:     2 TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESK 61

Query:    64 GREHYNFMQKMLLPCGLPPEREDD 87
              R  +N M+KML P G P ++ ++
Sbjct:    62 ARVRFNLMEKMLQPSGPPADKPEE 85

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0005689 "U12-type spliceosomal complex" evidence=ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

RGD|1586993 Sf3b5 "splicing factor 3b, subunit 5" [Rattus norvegicus (taxid:10116)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 49/84 (58%), Positives = 65/84 (77%)

Query:     4 SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESI 63
             +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES 
Sbjct:     2 TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESK 61

Query:    64 GREHYNFMQKMLLPCGLPPEREDD 87
              R  +N M+KML P G P ++ ++
Sbjct:    62 ARVRFNLMEKMLQPSGPPADKPEE 85

GO:0005634 "nucleus" evidence=ISO

GO:0005689 "U12-type spliceosomal complex" evidence=IEA;ISO

DICTYBASE|DDB_G0271312 sf3b5 "splicing factor 3B subunit 10 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 47/84 (55%), Positives = 64/84 (76%)

Query:     4 SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESI 63
             S+R ++NSQLEHLQ +YVGTGHAD+++ EW  N  RDS +S+IGH   L+ F+IAENES+
Sbjct:     2 SERESLNSQLEHLQMRYVGTGHADISKHEWLTNQHRDSLSSFIGHSSFLSLFSIAENESV 61

Query:    64 GREHYNFMQKMLLPCGLPPEREDD 87
             GR  YN + KM+ PCG  P+ +D+
Sbjct:    62 GRVRYNTLTKMISPCGPAPKIKDN 85

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005686 "U2 snRNP" evidence=ISS

GO:0008380 "RNA splicing" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

POMBASE|SPBC211.05 sab10 "splicing factor 3B (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 36/79 (45%), Positives = 52/79 (65%)

Query:     4 SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESI 63
             +DR    ++LE LQA+YVG G+A   ++EW VN  RD+ +S +GH P+LAY A A  E  
Sbjct:     2 ADRLRSQAKLEQLQARYVGVGNAFTTKYEWMVNQHRDTLSSVVGHPPLLAYMATALGEPR 61

Query:    64 GREHYNFMQKMLLPCGLPP 82
              +   N ++KM++PCG PP
Sbjct:    62 VQVRKNLLEKMIMPCGPPP 80


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.136   0.417    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       87        87   0.00091  102 3  11 22  0.45    29
                                                     29  0.48    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  547 (58 KB)
  Total size of DFA:  115 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.97u 0.11s 9.08t   Elapsed:  00:00:01
  Total cpu time:  8.97u 0.11s 9.08t   Elapsed:  00:00:01
  Start:  Sat May 11 12:13:34 2013   End:  Sat May 11 12:13:35 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005681 "spliceosomal complex" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LW64	SF3BA_ARATH	No assigned EC number	0.9425	1.0	1.0	yes	no
Q923D4	SF3B5_MOUSE	No assigned EC number	0.5833	0.9655	0.9767	yes	no
P58728	SF3BB_ARATH	No assigned EC number	0.9425	1.0	1.0	yes	no
Q56K13	SF3B5_BOVIN	No assigned EC number	0.5952	0.9655	0.9767	yes	no
Q9VHI4	SF3B5_DROME	No assigned EC number	0.6385	0.9540	0.9764	yes	no
Q9BWJ5	SF3B5_HUMAN	No assigned EC number	0.5952	0.9655	0.9767	yes	no
Q55BF5	SF3B5_DICDI	No assigned EC number	0.5595	0.9655	0.8936	yes	no
Q9P7R6	YHV5_SCHPO	No assigned EC number	0.4556	0.9080	0.9294	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_LG_VIII0705	SubName- Full=Putative uncharacterized protein; (87 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00170116	hypothetical protein (1268 aa)					•	•			0.601
	estExt_Genewise1_v1.C_LG_IX3069	SubName- Full=Putative uncharacterized protein; (117 aa)				•		•			0.464

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	87
pfam07189	79	pfam07189, SF3b10, Splicing factor 3B subunit 10 (	2e-45

>gnl|CDD|148662 pfam07189, SF3b10, Splicing factor 3B subunit 10 (SF3b10)

 Score =  140 bits (354), Expect = 2e-45
 Identities = 51/79 (64%), Positives = 59/79 (74%)

Query: 5  DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIG 64
          DR  I  QLEHLQ+KY+GTGHAD  ++EW  NI RD+YASYIGH   LAYFAIAENE   
Sbjct: 1  DRLRIQQQLEHLQSKYIGTGHADTTKWEWLTNIHRDTYASYIGHPSRLAYFAIAENEPKA 60

Query: 65 REHYNFMQKMLLPCGLPPE 83
          R  YN ++KML PCG PP+
Sbjct: 61 RVRYNMLEKMLQPCGPPPK 79

This family consists of several eukaryotic splicing factor 3B subunit 10 (SF3b10) proteins. SF3b10 is a 10 kDa subunit of the splicing factor SF3b. SF3b associates with the splicing factor SF3a and a 12S RNA unit to form the U2 small nuclear ribonucleoproteins complex. SF3b10 and SF3b14b are also thought to facilitate the interaction of U2 with the branch site. Length = 79

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	87
PF07189	79	SF3b10: Splicing factor 3B subunit 10 (SF3b10); In	100.0
KOG3485	86	consensus Uncharacterized conserved protein [Funct	100.0
PF10022	361	DUF2264: Uncharacterized protein conserved in bact	84.21

>PF07189 SF3b10: Splicing factor 3B subunit 10 (SF3b10); InterPro: IPR009846 This family consists of several eukaryotic splicing factor 3B subunit 5 (SF3b5) proteins

Probab=100.00  E-value=2.4e-56  Score=293.51  Aligned_cols=79  Identities=61%  Similarity=1.056  Sum_probs=78.3

Q ss_pred             hHhhHHHHHHHHHhhhcCCCCCCccHHHHHHHhhhhhHhhhhCChhHHHHHHHhhCcchHHHHHHHHHHhhCCCCCCCC
Q 047539            5 DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGLPPE   83 (87)
Q Consensus         5 dk~~~~~qle~Lq~KY~GtG~~DTTk~EW~tn~hRDT~aS~~gH~~lL~Y~aia~nes~~r~r~~ll~kM~~pcg~pp~   83 (87)
                      ||+|+++||||||+||+||||+|||||||++||||||||||+||++||+|||||+|+|++|+|++||+||+|||||||+
T Consensus         1 Dk~~~~~qle~Lq~KY~GtG~~dTTk~EW~tnihRDT~aS~~gH~~lL~Y~aia~ne~~~r~r~~ll~kM~~p~g~pp~   79 (79)
T PF07189_consen    1 DKYRIQQQLEHLQSKYVGTGHADTTKEEWLTNIHRDTYASIIGHPDLLEYFAIAENESKARVRFNLLEKMVQPCGPPPP   79 (79)
T ss_pred             ChhhHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcCCCHHHHHHHHHHHHhccCCCCCC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999999999996

SF3b5 is a 10 kDa subunit of the splicing factor SF3b. SF3b associates with the splicing factor SF3a and a 12S RNA unit to form the U2 small nuclear ribonucleoproteins complex. SF3b5 and SF3b14b are also thought to facilitate the interaction of U2 with the branch site []. Also included in this entry is RDS3 complex subunit 10, another protein involved in mRNA splicing [].

>KOG3485 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.1e-49  Score=264.70  Aligned_cols=83  Identities=67%  Similarity=1.208  Sum_probs=79.3

Q ss_pred             hhHhhHHHHHHHHHhhhcCCCCCCccHHHHHHHhhhhhHhhhhCChhHHHHHHHhhCcchHHHHHHHHHHhhCCCCC-CC
Q 047539            4 SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIGREHYNFMQKMLLPCGL-PP   82 (87)
Q Consensus         4 ~dk~~~~~qle~Lq~KY~GtG~~DTTk~EW~tn~hRDT~aS~~gH~~lL~Y~aia~nes~~r~r~~ll~kM~~pcg~-pp   82 (87)
                      +|||++++||||||+||+||||+||||+||++||||||++|+|||+++|.||+||||||++|+|+|+|+||++|||| ||
T Consensus         2 ~dRf~i~aqLEhLQskYvGtg~a~~tk~ew~vnq~RdS~~S~vgh~~~l~Y~a~ae~Ep~~rvr~N~lekml~pcg~wpp   81 (86)
T KOG3485|consen    2 GDRFNIHAQLEHLQSKYVGTGHADTTKFEWLVNQHRDSLASYVGHYPLLNYFAIAENEPKARVRFNLLEKMLQPCGPWPP   81 (86)
T ss_pred             cchhhHHHHHHHHHHHhhcccccccchHHHHHhcchhhhhhhcCCchHHHHHHHhccCchhhhhhcHHHHhhcccCCCCC
Confidence            49999999999999999999999999999999999999999999999999999999999999999999999999999 55


Q ss_pred             CCCC
Q 047539           83 ERED   86 (87)
Q Consensus        83 ~~~~   86 (87)
                      .+++
T Consensus        82 ~~e~   85 (86)
T KOG3485|consen   82 EKEE   85 (86)
T ss_pred             cccc
Confidence            5544

>PF10022 DUF2264: Uncharacterized protein conserved in bacteria (DUF2264); InterPro: IPR016624 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=84.21  E-value=3.2  Score=33.51  Aligned_cols=75  Identities=27%  Similarity=0.356  Sum_probs=58.8

Q ss_pred             hhHhhHHHHHHHHHhhhcCCCCCCccHHHHHHHhhhhhHhhhhCChhHHHHHHHhhCcchH---HHHH------HHHHHh
Q 047539            4 SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAENESIG---REHY------NFMQKM   74 (87)
Q Consensus         4 ~dk~~~~~qle~Lq~KY~GtG~~DTTk~EW~tn~hRDT~aS~~gH~~lL~Y~aia~nes~~---r~r~------~ll~kM   74 (87)
                      -|..++..-++.+.+=|+|=|=-.-..     +-|.|=|+|.+-|+-+|-|..++....+.   +.+.      +-.++|
T Consensus       172 ~d~~~i~~~l~~~e~~Y~GdGWY~DG~-----~~~~DYYns~aih~y~l~~~~~~~~~~~~~~~~~~~Ra~~fa~~~~~~  246 (361)
T PF10022_consen  172 YDEERIDYDLERIEEWYLGDGWYSDGP-----EFQFDYYNSWAIHPYLLLYARLMGDEDPERAARYRQRAQRFAEDYERM  246 (361)
T ss_pred             CcHHHHHHHHHHHHHHhccCCccccCC-----ccCCcchHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHH
Confidence            366788899999999999998544333     67999999999999999999999977643   3333      235789


Q ss_pred             hCCCCCCCC
Q 047539           75 LLPCGLPPE   83 (87)
Q Consensus        75 ~~pcg~pp~   83 (87)
                      +.|.|.+|+
T Consensus       247 f~~dG~~~~  255 (361)
T PF10022_consen  247 FSPDGAAPP  255 (361)
T ss_pred             cCCCCCcCC
Confidence            999996664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00