Citrus Sinensis ID: 047623

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340
Protein Sequence
MLSLIPSPTIQFKPLFPSKTIKPLKPFSSKSSIQSVLQWNRKPELAGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFSFFGLGVLAVTVGLEVGSVVFPILLIR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccEEEEEEcccccccHHHHHHHHHHHHHHccccEEEEEcccccccccHHccccccccccHHHHHcccccccEEEEcccccccEEEEEcccccccccccccHHHHHHHHHHHHHcccccccEEEEEccccccHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHccccccEEEEEcccccHHHHcccccHHHHHHHccccEEEEEcccHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHcccccHHHHHccccccccHHHHHHHHHHccccccccccEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccHHHHHHHcccHHHcccccEEEEEEcccccccHHHHHHHHHHHHHHccccEEEEEcccccccHHHHcccccEEEEEHHHHHcccccHcHHEEEccccccEEEEccccccccccccccHHHHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHccccEEEEEEcccHHHHHHHHHHHHHHHHcccEEEEEEEEEccHHHHcccccccHHHHHHHHHcHHccEcccccHEEEEccccccEEEcccccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHEcccEEEEEEEEEEccEEEEEEEcc
Coil and Loop (DISEMBL)
mlslipsptiqfkplfpsktikplkpfssksSIQSVLQwnrkpelagetpRVVVItsgkggvgktttTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNgdcrldqalvrdkrwsnFELLCiskprsklplgfggKALTWVVEALKSrqegspdfilidcpagidagfitaitpaneavlvttpditslrdadRVTGLLECDGIRDIKMVVNRVRTdmikgedmmSVLDIQEMLGLALlgvipedsevirstnrgyplvlnkpptlagLAFEQAAWRLVEQDSMKAvmveeepkrrgffsffGLGVLAVTVGLEVGSVVFPILLIR
Flexible Loop (DISEMBL)
mlslipsptiqfkplfpsktIKPLKPFSSKSSIQSVLQWnrkpelagetprvvvitsgkggvgktttTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNFELLCiskprsklplgfGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITpaneavlvttpditslrdadrvtgllecdgirdikmvvNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFSFFGLGVLAVTVglevgsvvfpillir
Low Complexity Region (SEG)
MLSLIPSPTIQFKPLFPSKTIKPLKPFSSKSSIQSVLQWNRKPELAGETPRvvvitsgkggvgkttttanvgLSLARLGFSVVAIDAdvglrnldlllglenrvNYTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFSFFGLGVLAVTVGLEVGSVVFPILLIR
Disordered region (IsUnstruct)
************************************LQWN****LAGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFSFFGLGVLAVTVGLEVGSVVFPILLI*
Disordered Region (DISOPRED)
*******PTIQ****************************************VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPRS*****FGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDM****DMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAWRLVEQDSMK**********RGFFSFFGLGVLAVTVGLEVGSVVFPILLIR
Disordered Region (DISEMBL)
MLSLIPSPTIQFKPLFPSKTIKPLKPFSSKSSIQSVLQWNRKPELAGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFSFFGLGVLAVTVGLEVGSVVFPILLIR
Disordered Region (DISPRO)
**SLIPSPTIQFKPLFPS************SSIQSVLQWNRKPELAGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFSFFGLGVLAVTVGLEVGSVVFPILLIR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLSLIPSPTIQFKPLFPSKTIKPLKPFSSKSSIQSVLQWNRKPELAGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFSFFGLGVLAVTVGLEVGSVVFPILLIR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	340	2.2.26 [Sep-21-2011]
Q9MBA2	326	Putative septum site-dete	yes	no	0.852	0.889	0.920	1e-147
Q20EV4	316	Putative septum site-dete	N/A	no	0.873	0.939	0.556	1e-81
Q9MUM5	286	Putative septum site-dete	N/A	no	0.788	0.937	0.602	1e-79
P56346	282	Putative septum site-dete	N/A	no	0.708	0.854	0.643	1e-77
Q3ZIZ0	306	Putative septum site-dete	N/A	no	0.714	0.794	0.626	2e-76
Q9T3P6	274	Putative septum site-dete	N/A	no	0.7	0.868	0.617	7e-74
O78436	269	Putative septum site-dete	yes	no	0.705	0.892	0.581	9e-67
Q4G386	272	Putative septum site-dete	N/A	no	0.697	0.871	0.530	1e-61
Q55900	266	Septum site-determining p	N/A	no	0.705	0.902	0.524	1e-59
Q01464	268	Septum site-determining p	yes	no	0.761	0.966	0.412	2e-53

>sp|Q9MBA2|MIND1_ARATH Putative septum site-determining protein minD homolog, chloroplastic OS=Arabidopsis thaliana GN=MIND1 PE=1 SV=1

 Score =  521 bits (1343), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 267/290 (92%), Positives = 284/290 (97%)

Query: 28  SSKSSIQSVLQWNRKPELAGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDA 87
           S +S I+SVLQ+NRKPELAGETPR+VVITSGKGGVGKTTTTANVGLSLAR GFSVVAIDA
Sbjct: 36  SRRSPIRSVLQFNRKPELAGETPRIVVITSGKGGVGKTTTTANVGLSLARYGFSVVAIDA 95

Query: 88  DVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGF 147
           D+GLRNLDLLLGLENRVNYT VEV+NGDCRLDQALVRDKRWSNFELLCISKPRSKLP+GF
Sbjct: 96  DLGLRNLDLLLGLENRVNYTCVEVINGDCRLDQALVRDKRWSNFELLCISKPRSKLPMGF 155

Query: 148 GGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDAD 207
           GGKAL W+V+ALK+R EGSPDFI+IDCPAGIDAGFITAITPANEAVLVTTPDIT+LRDAD
Sbjct: 156 GGKALEWLVDALKTRPEGSPDFIIIDCPAGIDAGFITAITPANEAVLVTTPDITALRDAD 215

Query: 208 RVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTN 267
           RVTGLLECDGIRDIKM+VNRVRTDMIKGEDMMSVLD+QEMLGL+LLGVIPEDSEVIRSTN
Sbjct: 216 RVTGLLECDGIRDIKMIVNRVRTDMIKGEDMMSVLDVQEMLGLSLLGVIPEDSEVIRSTN 275

Query: 268 RGYPLVLNKPPTLAGLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFSFFG 317
           RG+PLVLNKPPTLAGLAFEQAAWRLVEQDSMKAVMVEEEPK+RGFFSFFG
Sbjct: 276 RGFPLVLNKPPTLAGLAFEQAAWRLVEQDSMKAVMVEEEPKKRGFFSFFG 325

Calcium-dependent ATPase required for the correct placement of the plastid division site. Inhibits FtsZ filament and ring formation in the plastid. Mediates inhibition of plastid division. In cooperation with MINE1, prevents FtsZ ring formation anywhere outside of the mid-plastids.
Arabidopsis thaliana (taxid: 3702)

>sp|Q20EV4|MIND_OLTVI Putative septum site-determining protein MinD OS=Oltmannsiellopsis viridis GN=minD PE=3 SV=1

 Score =  303 bits (776), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 172/309 (55%), Positives = 221/309 (71%), Gaps = 12/309 (3%)

Query: 15  LFPSKTI--KPLKPFSSKSSIQSVLQWNRKPELA--GETPRVVVITSGKGGVGKTTTTAN 70
           +F S T    P +P     S  S  + N +P+L     TPR +V+TSGKGGVGKTT TAN
Sbjct: 15  IFSSNTNFETPFQPRVFHPSTSS--EINERPDLNLLEGTPRTIVVTSGKGGVGKTTATAN 72

Query: 71  VGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSN 130
           +G+S+ARLG+ VV +DAD+GLRNLDLLLGLENRV YT +++L+G CRLDQAL+RDKRW N
Sbjct: 73  LGMSIARLGYRVVLVDADIGLRNLDLLLGLENRVLYTAMDILDGQCRLDQALIRDKRWKN 132

Query: 131 FELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPAN 190
             LL ISK R +  +    K +  ++E+L   Q+   D+ILIDCPAGID GFI A++PA 
Sbjct: 133 LSLLAISKNRQRYNVT--RKRMNMLIESL---QKQGYDYILIDCPAGIDVGFINAVSPAK 187

Query: 191 EAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGL 250
           EA++VTTP+ITS+RDADRV GLLE +GI ++K++VNRVR++MI+  DMMSV D+QEMLG+
Sbjct: 188 EAIIVTTPEITSIRDADRVAGLLESNGIYNVKLLVNRVRSEMIQQNDMMSVRDVQEMLGI 247

Query: 251 ALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAWRLV-EQDSMKAVMVEEEPKR 309
            LLG IPED+ VI STNRG PLVL K  TL+G+AFE AA RL+ +QD    +        
Sbjct: 248 PLLGAIPEDNHVIISTNRGEPLVLKKKLTLSGIAFENAARRLIGKQDYFIDLQTPYRNVF 307

Query: 310 RGFFSFFGL 318
           + F  F G 
Sbjct: 308 QRFQQFLGF 316

ATPase required for the correct placement of the division site.

Oltmannsiellopsis viridis (taxid: 51324)

>sp|Q9MUM5|MIND_MESVI Putative septum site-determining protein MinD OS=Mesostigma viride GN=minD PE=3 SV=1

 Score =  297 bits (760), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 167/277 (60%), Positives = 206/277 (74%), Gaps = 9/277 (3%)

Query: 38  QWNRKPELAGET-PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDL 96
           Q N+  E    T  R +VITSGKGGVGKTTTTAN+G+S+ARLG+ V  IDADVGLRNLDL
Sbjct: 4   QINKDGEKKNSTDTRTIVITSGKGGVGKTTTTANLGMSIARLGYKVALIDADVGLRNLDL 63

Query: 97  LLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVV 156
           LLGLENRV YT +EV  G+C LDQAL+RDKRWSN  LL ISK R +  L    + +  +V
Sbjct: 64  LLGLENRVIYTAMEVFEGECCLDQALIRDKRWSNLALLAISKTRQRYHLTR--RNMEMLV 121

Query: 157 EALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECD 216
           ++++ R   + +FILIDCPAGID GF+ A+ PA EAV+VTTP+ITS+RDADRV GLLE  
Sbjct: 122 DSIRLR---NYNFILIDCPAGIDVGFVNAVAPAEEAVVVTTPEITSIRDADRVAGLLEAS 178

Query: 217 GIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNK 276
           GI ++K++VNRVR DMI+  DM+SV D+QEMLG+ LLG IPED+ VI STNRG PLVLNK
Sbjct: 179 GIYEVKLLVNRVRPDMIQKNDMLSVRDVQEMLGIPLLGAIPEDTNVIVSTNRGQPLVLNK 238

Query: 277 PPTLAGLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFF 313
             TL+G++FE AA RLV +   K  +V  E   +G  
Sbjct: 239 KLTLSGISFENAARRLVGR---KEYLVNLETGNKGLL 272

ATPase required for the correct placement of the division site.

Mesostigma viride (taxid: 41882)

>sp|P56346|MIND_CHLVU Putative septum site-determining protein MinD OS=Chlorella vulgaris GN=minD PE=3 SV=1

 Score =  290 bits (741), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 159/247 (64%), Positives = 196/247 (79%), Gaps = 6/247 (2%)

Query: 51  RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVE 110
           RV+VITSGKGGVGKTTTTAN+G+S+ARLG+ V  IDAD+GLRNLDLLLGLENRV YT ++
Sbjct: 17  RVIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDLLLGLENRVLYTAMD 76

Query: 111 VLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFI 170
           ++ G CRLDQAL+RDKRW N  LL ISK R K  +    K +  +++++K   E    F+
Sbjct: 77  IVEGQCRLDQALIRDKRWKNLALLAISKNRQKYNVTR--KNMQNLIDSVK---ELGFQFV 131

Query: 171 LIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRT 230
           LIDCPAGID GFI AI  A EAV+VTTP+IT++RDADRV GLLE +GI ++K++VNRVR 
Sbjct: 132 LIDCPAGIDVGFINAIASAQEAVIVTTPEITAIRDADRVAGLLEANGIYNVKLLVNRVRP 191

Query: 231 DMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAW 290
           DMI+  DMMSV D+QEMLG+ LLG IPED+ VI STN+G PLVLNK  TL+G+AFE AA 
Sbjct: 192 DMIQKNDMMSVRDVQEMLGIPLLGAIPEDTSVIISTNKGEPLVLNKKLTLSGIAFENAAR 251

Query: 291 RLV-EQD 296
           RL+ +QD
Sbjct: 252 RLIGKQD 258

ATPase required for the correct placement of the division site.

Chlorella vulgaris (taxid: 3077)

>sp|Q3ZIZ0|MIND_PSEAK Putative septum site-determining protein MinD OS=Pseudendoclonium akinetum GN=minD PE=3 SV=1

 Score =  285 bits (730), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 156/249 (62%), Positives = 198/249 (79%), Gaps = 6/249 (2%)

Query: 49  TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTV 108
           + R++V+TSGKGGVGKTT TAN+G+S+ARLG+ VV IDAD+GLRNLDLLLGLENR+ YTV
Sbjct: 40  SSRIIVVTSGKGGVGKTTATANIGMSIARLGYKVVLIDADIGLRNLDLLLGLENRILYTV 99

Query: 109 VEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPD 168
           ++V  G CRLDQAL+RDKRW N  LL ISK R +  +    K +  +V+AL +    +  
Sbjct: 100 MDVFEGQCRLDQALIRDKRWKNLSLLSISKNRQRYNVT--RKNMQNLVKALANL---NFR 154

Query: 169 FILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRV 228
           +ILIDCPAGID GFI AI+PA EA++VTT +I ++RDADRV GLLE +GI DIK+++NRV
Sbjct: 155 YILIDCPAGIDVGFINAISPAQEALIVTTSEIPAIRDADRVAGLLEANGIFDIKLLINRV 214

Query: 229 RTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQA 288
           R+D+I+  DMMSV D+QE+LG+ LLG IPED++VI STNRG PLVL K  TL+G+AFE A
Sbjct: 215 RSDLIQKNDMMSVRDVQEVLGVPLLGAIPEDNQVIVSTNRGEPLVLKKKLTLSGIAFENA 274

Query: 289 AWRLV-EQD 296
           A RLV +QD
Sbjct: 275 ARRLVGKQD 283

ATPase required for the correct placement of the division site.

Pseudendoclonium akinetum (taxid: 160070)

>sp|Q9T3P6|MIND_NEPOL Putative septum site-determining protein MinD OS=Nephroselmis olivacea GN=minD-A PE=3 SV=1

 Score =  277 bits (709), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 150/243 (61%), Positives = 188/243 (77%), Gaps = 5/243 (2%)

Query: 51  RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVE 110
           RV+VITSGKGGVGKTT TAN+G+ +ARLG+ V  IDAD+GLRNLDLLLGLENRV YT +E
Sbjct: 14  RVIVITSGKGGVGKTTATANLGMCIARLGYRVALIDADIGLRNLDLLLGLENRVVYTAME 73

Query: 111 VLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFI 170
           V+ G CRL+QAL+RDKRW N  +L +SK R +  +    K +  +V+++K R      +I
Sbjct: 74  VIEGQCRLEQALIRDKRWKNLSMLAMSKNRQRYNMTR--KNMMMIVDSIKER---GYQYI 128

Query: 171 LIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRT 230
           LIDCPAGIDAGF+ AI PA+EA+LVTTP+IT++RDADRV GLLE +   ++++V NRVR 
Sbjct: 129 LIDCPAGIDAGFVNAIAPADEAILVTTPEITAIRDADRVAGLLEANDFYNVRLVANRVRP 188

Query: 231 DMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAW 290
           +MI+  DMMSV D+Q M+G+ LLG IPED  VI STNRG PLV  K  TLAG+AFE+AA 
Sbjct: 189 EMIQQNDMMSVDDVQGMIGVPLLGAIPEDKNVIISTNRGEPLVCQKTITLAGVAFEEAAR 248

Query: 291 RLV 293
           RLV
Sbjct: 249 RLV 251

ATPase required for the correct placement of the division site.

Nephroselmis olivacea (taxid: 31312)

>sp|O78436|MIND_GUITH Putative septum site-determining protein MinD OS=Guillardia theta GN=minD PE=3 SV=1

 Score =  254 bits (648), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 143/246 (58%), Positives = 186/246 (75%), Gaps = 6/246 (2%)

Query: 51  RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVE 110
           R+VVITSGKGGVGKTT TAN+G++LA+LG+    IDAD+GLRNLDLLLGLENRV YT +E
Sbjct: 3   RIVVITSGKGGVGKTTVTANLGMALAQLGYRTALIDADIGLRNLDLLLGLENRVIYTALE 62

Query: 111 VLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFI 170
           VL+G+CRL+QAL++DKR  N  LL  ++ R+K  +    + + ++V  L +      D++
Sbjct: 63  VLSGECRLEQALIKDKRQPNLVLLPAAQNRNKDSVT--EEQMKFLVNLLVN----DYDYL 116

Query: 171 LIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRT 230
           LIDCPAGI+ GF  AI PA EA++VTTP+I ++RDADRV GLLE +GI+ IK++VNR+R 
Sbjct: 117 LIDCPAGIETGFHNAIGPAQEAIVVTTPEIAAVRDADRVIGLLEANGIKQIKLLVNRLRP 176

Query: 231 DMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAW 290
            M+K  DMMSV D++E+L + L+GVIPED  VI STNRG PLVL K  +L GLAFE  A 
Sbjct: 177 QMVKANDMMSVADVREILAIPLIGVIPEDECVIVSTNRGEPLVLEKNLSLPGLAFEHTAC 236

Query: 291 RLVEQD 296
           RL  Q+
Sbjct: 237 RLDGQE 242

ATPase required for the correct placement of the division site.

Guillardia theta (taxid: 55529)

>sp|Q4G386|MIND_EMIHU Putative septum site-determining protein MinD OS=Emiliania huxleyi GN=minD PE=3 SV=1

 Score =  237 bits (604), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 129/243 (53%), Positives = 182/243 (74%), Gaps = 6/243 (2%)

Query: 51  RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVE 110
           R++VITSGKGGVGKTTTT+N+G++LA+L   V+ +DADVGL+NLDLLLGLENR+ Y  ++
Sbjct: 3   RIIVITSGKGGVGKTTTTSNIGIALAKLEQRVLLLDADVGLKNLDLLLGLENRIVYNGLD 62

Query: 111 VLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFI 170
           VLNG+CRL QAL++DKR  N     +S  + KLP+    + +  +V+ LK+      DFI
Sbjct: 63  VLNGECRLTQALIQDKRQPNLTFFPLSSNQLKLPVT--KEQINDLVDQLKNNY----DFI 116

Query: 171 LIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRT 230
           LID PAGID GF  AI  A EA++V TP++TS+RDAD+V GLLE  GI DI +++NR+R 
Sbjct: 117 LIDSPAGIDEGFQVAIHTAKEAIVVVTPEVTSIRDADKVIGLLEAKGITDISLIINRLRP 176

Query: 231 DMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAW 290
           +M+K E+MMSV D++++LG+ L+GV+P+  +VI ++NRG PLVL+   ++ GLAF   A 
Sbjct: 177 EMVKAENMMSVTDVKDILGIPLIGVVPDSEQVITASNRGEPLVLDDKVSIPGLAFINTAR 236

Query: 291 RLV 293
           R++
Sbjct: 237 RIM 239

ATPase required for the correct placement of the division site.

Emiliania huxleyi (taxid: 2903)

>sp|Q55900|MIND_SYNY3 Septum site-determining protein MinD OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=minD PE=3 SV=1

 Score =  230 bits (587), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 129/246 (52%), Positives = 181/246 (73%), Gaps = 6/246 (2%)

Query: 51  RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVE 110
           R++V+TSGKGGVGKTTTTAN+G +LARLG  VV IDAD GLRNLDLLLGLE R+ YT ++
Sbjct: 3   RIIVVTSGKGGVGKTTTTANLGAALARLGKKVVLIDADFGLRNLDLLLGLEQRIVYTAID 62

Query: 111 VLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFI 170
           VL  +C +D+ALV+DKR  N  LL  ++ RSK       + +  +VE LK +     D+I
Sbjct: 63  VLADECTIDKALVKDKRLPNLVLLPAAQNRSKD--AINAEQMQSLVEQLKDKF----DYI 116

Query: 171 LIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRT 230
           +IDCPAGI+AGF  A+ PA EA++VTTP+++++RDADRV GLLE + I  I ++VNR+R 
Sbjct: 117 IIDCPAGIEAGFRNAVAPAQEAIIVTTPEMSAVRDADRVIGLLEAEDIGKISLIVNRLRP 176

Query: 231 DMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAW 290
           +M++   M+SV DI ++L + L+G++P+D ++I STN+G PLV+ +  ++ GLAF+  A 
Sbjct: 177 EMVQLNQMISVEDILDLLAVPLIGILPDDQKIIISTNKGEPLVMEEKLSVPGLAFQNIAR 236

Query: 291 RLVEQD 296
           RL  QD
Sbjct: 237 RLEGQD 242

ATPase required for the correct placement of the division site. Cell division inhibitors MinC and MinD act in concert to form an inhibitor capable of blocking formation of the polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q01464|MIND_BACSU Septum site-determining protein MinD OS=Bacillus subtilis (strain 168) GN=minD PE=1 SV=1

 Score =  209 bits (532), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 111/269 (41%), Positives = 181/269 (67%), Gaps = 10/269 (3%)

Query: 53  VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVL 112
           +VITSGKGGVGKTTT+AN+G +LA LG  V  +D D+GLRNLD+++GLENR+ Y +V+V+
Sbjct: 5   IVITSGKGGVGKTTTSANLGTALAILGKRVCLVDTDIGLRNLDVVMGLENRIIYDLVDVV 64

Query: 113 NGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILI 172
            G C++ QALV+DKR+ +  L  +   ++        + +  +V+ LK       D+++I
Sbjct: 65  EGRCKMHQALVKDKRFDDL-LYLMPAAQTSDKTAVAPEQIKNMVQELKQ----EFDYVII 119

Query: 173 DCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLEC-DGIRDIKMVVNRVRTD 231
           DCPAGI+ G+  A++ A++A++VTTP+I+++RDADR+ GLLE  + I   ++VVNR+R  
Sbjct: 120 DCPAGIEQGYKNAVSGADKAIVVTTPEISAVRDADRIIGLLEQEENIEPPRLVVNRIRNH 179

Query: 232 MIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAWR 291
           ++K  D M + +I + L + LLG++ +D EVI+++N G P+ ++ P   A +A+   A R
Sbjct: 180 LMKNGDTMDIDEIVQHLSIDLLGIVADDDEVIKASNHGEPIAMD-PKNRASIAYRNIARR 238

Query: 292 LVEQDSMKAVMVEEEPK--RRGFFSFFGL 318
           ++ + S+   ++EE+ K       SFFG+
Sbjct: 239 ILGE-SVPLQVLEEQNKGMMAKIKSFFGV 266

ATPase required for the correct placement of the division site. Cell division inhibitors MinC and MinD act in concert to form an inhibitor capable of blocking formation of the polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings.

Bacillus subtilis (strain 168) (taxid: 224308)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	340
225464575	333	PREDICTED: putative septum site-determin	0.923	0.942	0.894	1e-152
255545190	326	Septum site-determining protein minD, pu	0.929	0.969	0.874	1e-152
224079682	326	predicted protein [Populus trichocarpa]	0.929	0.969	0.868	1e-152
378750397	328	MinD protein [Manihot esculenta]	0.935	0.969	0.856	1e-152
71089839	326	plastid division regulator MinD [Populus	0.897	0.935	0.905	1e-151
449497257	325	PREDICTED: putative septum site-determin	0.923	0.966	0.876	1e-150
356561518	324	PREDICTED: putative septum site-determin	0.885	0.929	0.882	1e-147
156865908	332	plastid division regulator MinD [Nicotia	0.911	0.933	0.871	1e-147
71089843	332	plastid division regulator MinD [Solanum	0.879	0.900	0.881	1e-146
15237874	326	septum site-determining protein (MIND) [	0.852	0.889	0.920	1e-145

>gi|225464575|ref|XP_002273527.1| PREDICTED: putative septum site-determining protein minD homolog, chloroplastic [Vitis vinifera]

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 287/321 (89%), Positives = 304/321 (94%), Gaps = 7/321 (2%)

Query: 2   LSLIPSPTIQFKPLFPSKTIKPLKP-FSSK----SSIQSVLQWNRKPELAGETPRVVVIT 56
           LS I +P   FK L P KT+KP KP F  K    ++IQSVLQWNRKP+LAG+TPRVVVIT
Sbjct: 14  LSSIYTPN-PFKSLNP-KTLKPSKPNFKPKPHNPTTIQSVLQWNRKPQLAGDTPRVVVIT 71

Query: 57  SGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDC 116
           SGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDC
Sbjct: 72  SGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDC 131

Query: 117 RLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPA 176
           RLDQALVRDKRWSNFELLCISKPRSKLP+GFGGKALTW+V+ALK+R+EGSPDFILIDCPA
Sbjct: 132 RLDQALVRDKRWSNFELLCISKPRSKLPIGFGGKALTWLVDALKAREEGSPDFILIDCPA 191

Query: 177 GIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGE 236
           GIDAGFITAI PANEAVLVTTPDITSLRDADRVTGLLECDGI+DIKM+VNRVRTDMIKGE
Sbjct: 192 GIDAGFITAIAPANEAVLVTTPDITSLRDADRVTGLLECDGIKDIKMIVNRVRTDMIKGE 251

Query: 237 DMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAWRLVEQD 296
           DMMSVLD+QEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAWRLVEQD
Sbjct: 252 DMMSVLDVQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAWRLVEQD 311

Query: 297 SMKAVMVEEEPKRRGFFSFFG 317
           SM+AV+VEEEPK+RGFFSFFG
Sbjct: 312 SMQAVVVEEEPKKRGFFSFFG 332

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545190|ref|XP_002513656.1| Septum site-determining protein minD, putative [Ricinus communis] gi|223547564|gb|EEF49059.1| Septum site-determining protein minD, putative [Ricinus communis]

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 285/326 (87%), Positives = 303/326 (92%), Gaps = 10/326 (3%)

Query: 1   MLSLI--PSPTI-----QFKPLF--PSKTIKPLKPFSSKSSIQSVLQWNRKPELAGETPR 51
           MLSL   P+P+       FKP     ++T+KP K  S  S++QSVLQWNRKPELAGETPR
Sbjct: 1   MLSLKCNPNPSFLHSLAPFKPFVNPKTQTLKPSKSHS-HSAVQSVLQWNRKPELAGETPR 59

Query: 52  VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEV 111
           VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYT+VEV
Sbjct: 60  VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTLVEV 119

Query: 112 LNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFIL 171
           +NGDCRLDQALVRDKRWSNFEL+CISKPRSKLPLGFGGKAL W+VEALK+R EG PDFI+
Sbjct: 120 MNGDCRLDQALVRDKRWSNFELVCISKPRSKLPLGFGGKALVWLVEALKTRNEGCPDFII 179

Query: 172 IDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231
           IDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKM+VNRVRTD
Sbjct: 180 IDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMIVNRVRTD 239

Query: 232 MIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAWR 291
           MIKGEDMMSVLD+QEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAWR
Sbjct: 240 MIKGEDMMSVLDVQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAWR 299

Query: 292 LVEQDSMKAVMVEEEPKRRGFFSFFG 317
           LVEQD+M+AVMVEEEPK+RGFFSFFG
Sbjct: 300 LVEQDTMQAVMVEEEPKKRGFFSFFG 325

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079682|ref|XP_002305909.1| predicted protein [Populus trichocarpa] gi|222848873|gb|EEE86420.1| predicted protein [Populus trichocarpa]

 Score =  543 bits (1399), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 285/328 (86%), Positives = 302/328 (92%), Gaps = 12/328 (3%)

Query: 1   MLSLIPSPTIQFKPLF---------PSKTI-KPLKPFSSKSSIQSVLQWNRKPELAGETP 50
           ML+L P P    KP F          ++T+ KP KP S+  +IQSVLQWNRKPELAGETP
Sbjct: 1   MLTLKPLPA-NTKPSFLHSLTPFRPKTQTLTKPFKPHSN-PAIQSVLQWNRKPELAGETP 58

Query: 51  RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVE 110
           RVVVITSGKGGVGKTTTTANVGLSLARLGFSVV++DADVGLRNLDLLLGLENRVNYT+VE
Sbjct: 59  RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVSVDADVGLRNLDLLLGLENRVNYTLVE 118

Query: 111 VLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFI 170
           V+NGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKAL W+VE+LKSRQEG P FI
Sbjct: 119 VMNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALVWLVESLKSRQEGCPHFI 178

Query: 171 LIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRT 230
           LIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRV GLLECDGIRDIKM+VNRVRT
Sbjct: 179 LIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVVGLLECDGIRDIKMIVNRVRT 238

Query: 231 DMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAW 290
           DMIKGEDMMSVLD+QEMLGLALLGVIPED+EVIRSTNRGYPLVLNKPPTLAGLAFEQAAW
Sbjct: 239 DMIKGEDMMSVLDVQEMLGLALLGVIPEDTEVIRSTNRGYPLVLNKPPTLAGLAFEQAAW 298

Query: 291 RLVEQDSMKAVMVEEEPKRRGFFSFFGL 318
           RLVEQDSMKAVMVEEEPK+RGFFSFFG+
Sbjct: 299 RLVEQDSMKAVMVEEEPKKRGFFSFFGV 326

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|378750397|gb|AFC37490.1| MinD protein [Manihot esculenta]

 Score =  543 bits (1399), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 281/328 (85%), Positives = 298/328 (90%), Gaps = 10/328 (3%)

Query: 1   MLSLIPSPTIQ----FKPLFPSKTIKP------LKPFSSKSSIQSVLQWNRKPELAGETP 50
           M+SL P PT      F  L P K+  P           S S++QSVLQWNRKPELAGETP
Sbjct: 1   MISLKPLPTNLDSSFFHSLMPFKSFNPKTQTLKYSKSHSHSAVQSVLQWNRKPELAGETP 60

Query: 51  RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVE 110
           RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVA+DADVGLRNLDLLLGLENRVNYT+VE
Sbjct: 61  RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAVDADVGLRNLDLLLGLENRVNYTLVE 120

Query: 111 VLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFI 170
           V+NGDCRLDQALVRDKRWS+FELLCISKPRSKLPLGFGGKAL W+VE+LK+R EG PDFI
Sbjct: 121 VMNGDCRLDQALVRDKRWSDFELLCISKPRSKLPLGFGGKALVWLVESLKTRSEGCPDFI 180

Query: 171 LIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRT 230
           +IDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKM+VNRVRT
Sbjct: 181 IIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMIVNRVRT 240

Query: 231 DMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAW 290
           DMIKGEDMMSVLD+QEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAW
Sbjct: 241 DMIKGEDMMSVLDVQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAW 300

Query: 291 RLVEQDSMKAVMVEEEPKRRGFFSFFGL 318
           RLVEQD+MKAVMVEEEPK+RGFFS FG+
Sbjct: 301 RLVEQDTMKAVMVEEEPKKRGFFSLFGV 328

Source: Manihot esculenta

Species: Manihot esculenta

Genus: Manihot

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|71089839|gb|AAZ23776.1| plastid division regulator MinD [Populus tomentosa]

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 278/307 (90%), Positives = 292/307 (95%), Gaps = 2/307 (0%)

Query: 12  FKPLFPSKTIKPLKPFSSKSSIQSVLQWNRKPELAGETPRVVVITSGKGGVGKTTTTANV 71
           F+P   + T KP KP S   +IQSVLQWNRKPELAGETPRVVVITSGKGGVGKTTTTANV
Sbjct: 22  FRPKTQTLT-KPFKPHSY-PAIQSVLQWNRKPELAGETPRVVVITSGKGGVGKTTTTANV 79

Query: 72  GLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNF 131
           GLSLARLGFSVV++DADVGLRNLDLLLGLENRVNYT+VEV+NGDCRLDQALVRDKRWSNF
Sbjct: 80  GLSLARLGFSVVSVDADVGLRNLDLLLGLENRVNYTLVEVMNGDCRLDQALVRDKRWSNF 139

Query: 132 ELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANE 191
           ELLCISKPRSKLPLGFGGKAL W+VE+LKSRQEG P FILIDCPAGIDAGFITAITPANE
Sbjct: 140 ELLCISKPRSKLPLGFGGKALVWLVESLKSRQEGCPHFILIDCPAGIDAGFITAITPANE 199

Query: 192 AVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLA 251
           AVLVTTPDITSLRDADRV GLLECDGIRDIKM+VNRVRTDMIKGEDMMSVLD+QEMLGLA
Sbjct: 200 AVLVTTPDITSLRDADRVVGLLECDGIRDIKMIVNRVRTDMIKGEDMMSVLDVQEMLGLA 259

Query: 252 LLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAWRLVEQDSMKAVMVEEEPKRRG 311
           LLGVIPED+EVIRSTNRGYPLVLNKPPTLAGLAFEQAAWRLVEQDSMKAVM EEEPK+RG
Sbjct: 260 LLGVIPEDTEVIRSTNRGYPLVLNKPPTLAGLAFEQAAWRLVEQDSMKAVMAEEEPKKRG 319

Query: 312 FFSFFGL 318
           FFSFFG+
Sbjct: 320 FFSFFGV 326

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449497257|ref|XP_004160354.1| PREDICTED: putative septum site-determining protein minD homolog, chloroplastic-like [Cucumis sativus]

 Score =  536 bits (1380), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 283/323 (87%), Positives = 298/323 (92%), Gaps = 9/323 (2%)

Query: 2   LSLIPSPTIQFKPLFPSKTIK---PLKPFSSKSS----IQSVLQWNRKPELAGETPRVVV 54
           L L+P+P   F   F SKT+    P   F  KS     I+SVLQWNRKPELAG+TPRVVV
Sbjct: 4   LHLLPNPF--FFNSFHSKTLTSPIPNPKFLPKSPSFTPIKSVLQWNRKPELAGDTPRVVV 61

Query: 55  ITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNG 114
           ITSGKGGVGKTTTTANVG+SLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNG
Sbjct: 62  ITSGKGGVGKTTTTANVGISLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNG 121

Query: 115 DCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDC 174
           DCRLDQALVRDKRWSNFELLCISKPRSKLP+GFGGKAL W+V+ALK+RQEG PDFI+IDC
Sbjct: 122 DCRLDQALVRDKRWSNFELLCISKPRSKLPIGFGGKALVWLVDALKARQEGCPDFIIIDC 181

Query: 175 PAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIK 234
           PAGIDAGFITAITPANEA+LVTTPDITSLRDADRVTGLLECDGIRDIKM+VNRVRTDMIK
Sbjct: 182 PAGIDAGFITAITPANEAILVTTPDITSLRDADRVTGLLECDGIRDIKMMVNRVRTDMIK 241

Query: 235 GEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAWRLVE 294
           GEDMMSVLD+QEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAWRLVE
Sbjct: 242 GEDMMSVLDVQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAWRLVE 301

Query: 295 QDSMKAVMVEEEPKRRGFFSFFG 317
           QDSM AVMVEEEPK+RGFFSFFG
Sbjct: 302 QDSMTAVMVEEEPKKRGFFSFFG 324

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561518|ref|XP_003549028.1| PREDICTED: putative septum site-determining protein minD homolog, chloroplastic-like [Glycine max]

 Score =  527 bits (1357), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 270/306 (88%), Positives = 288/306 (94%), Gaps = 5/306 (1%)

Query: 12  FKPLFPSKTIKPLKPFSSKSSIQSVLQWNRKPELAGETPRVVVITSGKGGVGKTTTTANV 71
             PLFPSKT+ P KP        ++LQWNRKPEL+G TPRV VITSGKGGVGKTTTTAN+
Sbjct: 23  HSPLFPSKTLTPKKP----KPPSALLQWNRKPELSGSTPRVAVITSGKGGVGKTTTTANI 78

Query: 72  GLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNF 131
           GLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTV+EVLNG+CRLDQALVRDKRWSNF
Sbjct: 79  GLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVIEVLNGECRLDQALVRDKRWSNF 138

Query: 132 ELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANE 191
           ELLCISKPRSKLPLGFGGKALTW+V+ALK+R +G PDFILIDCPAGIDAGFITAITPANE
Sbjct: 139 ELLCISKPRSKLPLGFGGKALTWLVDALKARSQGCPDFILIDCPAGIDAGFITAITPANE 198

Query: 192 AVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLA 251
           AVL+TTPDITSLRDADRVTGLLECDGIRDIKM+VNRVRTDMIKGEDMMSVLD+QEMLGL 
Sbjct: 199 AVLITTPDITSLRDADRVTGLLECDGIRDIKMIVNRVRTDMIKGEDMMSVLDVQEMLGLP 258

Query: 252 LLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAWRLVEQDSMKAVMVEEEPKRRG 311
           LLGVIPEDSEVIRSTNRG+PLVLNKPPTLAGLAFEQAAWRLVEQDSM+AV+VEE+PK RG
Sbjct: 259 LLGVIPEDSEVIRSTNRGFPLVLNKPPTLAGLAFEQAAWRLVEQDSMQAVVVEEQPK-RG 317

Query: 312 FFSFFG 317
           FFSFFG
Sbjct: 318 FFSFFG 323

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|156865908|gb|ABU96467.1| plastid division regulator MinD [Nicotiana tabacum]

 Score =  526 bits (1354), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 272/312 (87%), Positives = 289/312 (92%), Gaps = 2/312 (0%)

Query: 6   PSPTIQFKPLFPSKTIKPLKPFSSKSSIQSVLQWNRKPELAGETPRVVVITSGKGGVGKT 65
           P  ++  K L P  T KP + F    SI S+LQ+NRKP+LAGETPRVVVITSGKGGVGKT
Sbjct: 22  PPNSLSPKTLKPIPTPKPSRNFYP--SIHSILQYNRKPQLAGETPRVVVITSGKGGVGKT 79

Query: 66  TTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRD 125
           TTTAN+GLSLARLGFSVVAID DVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRD
Sbjct: 80  TTTANIGLSLARLGFSVVAIDCDVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRD 139

Query: 126 KRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITA 185
           KRWSNFELLCISKPRSKLP+GFGGKAL W+V+ALK+R EG+PD I+IDCPAGIDAGFITA
Sbjct: 140 KRWSNFELLCISKPRSKLPIGFGGKALVWLVDALKARDEGAPDLIIIDCPAGIDAGFITA 199

Query: 186 ITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQ 245
           ITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKM+VNRVRTDMIKGEDMMSVLD+Q
Sbjct: 200 ITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMMVNRVRTDMIKGEDMMSVLDVQ 259

Query: 246 EMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAWRLVEQDSMKAVMVEE 305
           EMLGL LLGVIPEDSEVIRSTNRGYPLVLNKPP LAG AFEQAAWRLVEQDSM+AVMVEE
Sbjct: 260 EMLGLPLLGVIPEDSEVIRSTNRGYPLVLNKPPALAGSAFEQAAWRLVEQDSMEAVMVEE 319

Query: 306 EPKRRGFFSFFG 317
           EPK+RGFFSFFG
Sbjct: 320 EPKKRGFFSFFG 331

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|71089843|gb|AAZ23778.1| plastid division regulator MinD [Solanum tuberosum]

 Score =  522 bits (1345), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 267/303 (88%), Positives = 285/303 (94%), Gaps = 4/303 (1%)

Query: 19  KTIKPLKPFSSKS----SIQSVLQWNRKPELAGETPRVVVITSGKGGVGKTTTTANVGLS 74
           KT+KP+  F        SI S+LQ+NRKP+LAG+TPRV+VITSGKGGVGKTTTTAN+GLS
Sbjct: 29  KTLKPILAFRPSRNLYPSIHSMLQYNRKPQLAGDTPRVLVITSGKGGVGKTTTTANIGLS 88

Query: 75  LARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNFELL 134
           LARLGFSVVAID DVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNFELL
Sbjct: 89  LARLGFSVVAIDCDVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNFELL 148

Query: 135 CISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVL 194
           CISKPRSKLP+GFGGKAL W+V+ALK+R EG PDFI+IDCPAGIDAGFITAITPANEAVL
Sbjct: 149 CISKPRSKLPIGFGGKALVWLVDALKARDEGGPDFIIIDCPAGIDAGFITAITPANEAVL 208

Query: 195 VTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLG 254
           VTTPDITSLRDADRVTGLLECDGIRDIKM+VNRVRTDMIKGEDMMSVLD+QEMLGL LLG
Sbjct: 209 VTTPDITSLRDADRVTGLLECDGIRDIKMIVNRVRTDMIKGEDMMSVLDVQEMLGLPLLG 268

Query: 255 VIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFS 314
           VIPEDSEVIRSTNRGYPLVLNKPP LAGLAFEQAAWRLVEQDSM+ VM+EEEPK+RGFFS
Sbjct: 269 VIPEDSEVIRSTNRGYPLVLNKPPALAGLAFEQAAWRLVEQDSMETVMMEEEPKKRGFFS 328

Query: 315 FFG 317
           FFG
Sbjct: 329 FFG 331

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237874|ref|NP_197790.1| septum site-determining protein (MIND) [Arabidopsis thaliana] gi|75264960|sp|Q9MBA2.1|MIND1_ARATH RecName: Full=Putative septum site-determining protein minD homolog, chloroplastic; Short=AtMinD1; AltName: Full=Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 11; AltName: Full=Septum site-determining protein MinD1; Flags: Precursor gi|6759277|dbj|BAA90261.1| MinD [Arabidopsis thaliana] gi|9758226|dbj|BAB08725.1| septum site-determining MinD [Arabidopsis thaliana] gi|25083076|gb|AAN72038.1| septum site-determining MinD [Arabidopsis thaliana] gi|31711804|gb|AAP68258.1| At5g24020 [Arabidopsis thaliana] gi|332005863|gb|AED93246.1| septum site-determining protein (MIND) [Arabidopsis thaliana]

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 267/290 (92%), Positives = 284/290 (97%)

Query: 28  SSKSSIQSVLQWNRKPELAGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDA 87
           S +S I+SVLQ+NRKPELAGETPR+VVITSGKGGVGKTTTTANVGLSLAR GFSVVAIDA
Sbjct: 36  SRRSPIRSVLQFNRKPELAGETPRIVVITSGKGGVGKTTTTANVGLSLARYGFSVVAIDA 95

Query: 88  DVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGF 147
           D+GLRNLDLLLGLENRVNYT VEV+NGDCRLDQALVRDKRWSNFELLCISKPRSKLP+GF
Sbjct: 96  DLGLRNLDLLLGLENRVNYTCVEVINGDCRLDQALVRDKRWSNFELLCISKPRSKLPMGF 155

Query: 148 GGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDAD 207
           GGKAL W+V+ALK+R EGSPDFI+IDCPAGIDAGFITAITPANEAVLVTTPDIT+LRDAD
Sbjct: 156 GGKALEWLVDALKTRPEGSPDFIIIDCPAGIDAGFITAITPANEAVLVTTPDITALRDAD 215

Query: 208 RVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTN 267
           RVTGLLECDGIRDIKM+VNRVRTDMIKGEDMMSVLD+QEMLGL+LLGVIPEDSEVIRSTN
Sbjct: 216 RVTGLLECDGIRDIKMIVNRVRTDMIKGEDMMSVLDVQEMLGLSLLGVIPEDSEVIRSTN 275

Query: 268 RGYPLVLNKPPTLAGLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFSFFG 317
           RG+PLVLNKPPTLAGLAFEQAAWRLVEQDSMKAVMVEEEPK+RGFFSFFG
Sbjct: 276 RGFPLVLNKPPTLAGLAFEQAAWRLVEQDSMKAVMVEEEPKKRGFFSFFG 325

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	340
TAIR|locus:2178717	326	MIND [Arabidopsis thaliana (ta	0.914	0.953	0.761	3.7e-119
UNIPROTKB|Q55900	266	minD "Septum site-determining	0.638	0.815	0.434	1.2e-42
UNIPROTKB|Q3AF73	264	minD "Site-determining protein	0.673	0.867	0.373	3e-37
TIGR_CMR|CHY_0348	264	CHY_0348 "septum site-determin	0.673	0.867	0.373	3e-37
TIGR_CMR|BA_4680	265	BA_4680 "septum site-determini	0.605	0.777	0.406	4e-35
TIGR_CMR|CPS_2582	269	CPS_2582 "septum site-determin	0.691	0.873	0.334	3.5e-27
UNIPROTKB|P0AEZ3	270	minD [Escherichia coli K-12 (t	0.688	0.866	0.341	7.3e-27
UNIPROTKB|Q9KQN8	276	VC_1960 "Site-determining prot	0.597	0.735	0.348	3.2e-26
TIGR_CMR|VC_1960	276	VC_1960 "septum site-determini	0.597	0.735	0.348	3.2e-26
TIGR_CMR|SO_2577	269	SO_2577 "septum site-determini	0.594	0.750	0.339	2.2e-25

TAIR|locus:2178717 MIND [Arabidopsis thaliana (taxid:3702)]

 Score = 1173 (418.0 bits), Expect = 3.7e-119, P = 3.7e-119
 Identities = 239/314 (76%), Positives = 255/314 (81%)

Query:     4 LIPSPTIQFKPLFPSKTIKPLKPFSSKSSIQSVLQWNRKPELAGETPRXXXXXXXXXXXX 63
             L+PS   Q K L  S       P S +S I+SVLQ+NRKPELAGETPR            
Sbjct:    15 LLPSSLSQ-KTLISSPRFVN-NP-SRRSPIRSVLQFNRKPELAGETPRIVVITSGKGGVG 71

Query:    64 XXXXXXXXXLSLARLGFSVVAIDAXXXXXXXXXXXXXXXXXNYTVVEVLNGDCRLDQALV 123
                      LSLAR GFSVVAIDA                 NYT VEV+NGDCRLDQALV
Sbjct:    72 KTTTTANVGLSLARYGFSVVAIDADLGLRNLDLLLGLENRVNYTCVEVINGDCRLDQALV 131

Query:   124 RDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFI 183
             RDKRWSNFELLCISKPRSKLP+GFGGKAL W+V+ALK+R EGSPDFI+IDCPAGIDAGFI
Sbjct:   132 RDKRWSNFELLCISKPRSKLPMGFGGKALEWLVDALKTRPEGSPDFIIIDCPAGIDAGFI 191

Query:   184 TAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLD 243
             TAITPANEAVLVTTPDIT+LRDADRVTGLLECDGIRDIKM+VNRVRTDMIKGEDMMSVLD
Sbjct:   192 TAITPANEAVLVTTPDITALRDADRVTGLLECDGIRDIKMIVNRVRTDMIKGEDMMSVLD 251

Query:   244 IQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAWRLVEQDSMKAVMV 303
             +QEMLGL+LLGVIPEDSEVIRSTNRG+PLVLNKPPTLAGLAFEQAAWRLVEQDSMKAVMV
Sbjct:   252 VQEMLGLSLLGVIPEDSEVIRSTNRGFPLVLNKPPTLAGLAFEQAAWRLVEQDSMKAVMV 311

Query:   304 EEEPKRRGFFSFFG 317
             EEEPK+RGFFSFFG
Sbjct:   312 EEEPKKRGFFSFFG 325

GO:0000918 "barrier septum site selection" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016887 "ATPase activity" evidence=IEA;TAS

GO:0010020 "chloroplast fission" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0030899 "calcium-dependent ATPase activity" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

UNIPROTKB|Q55900 minD "Septum site-determining protein MinD" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 97/223 (43%), Positives = 145/223 (65%)

Query:    74 SLARLGFSVVAIDAXXXXXXXXXXXXXXXXXNYTVVEVLNGDCRLDQALVRDKRWSNFEL 133
             +LARLG  VV IDA                  YT ++VL  +C +D+ALV+DKR  N  L
Sbjct:    26 ALARLGKKVVLIDADFGLRNLDLLLGLEQRIVYTAIDVLADECTIDKALVKDKRLPNLVL 85

Query:   134 LCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAV 193
             L  ++ RSK  +    + +  +VE LK +     D+I+IDCPAGI+AGF  A+ PA EA+
Sbjct:    86 LPAAQNRSKDAIN--AEQMQSLVEQLKDKF----DYIIIDCPAGIEAGFRNAVAPAQEAI 139

Query:   194 LVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL 253
             +VTTP+++++RDADRV GLLE + I  I ++VNR+R +M++   M+SV DI ++L + L+
Sbjct:   140 IVTTPEMSAVRDADRVIGLLEAEDIGKISLIVNRLRPEMVQLNQMISVEDILDLLAVPLI 199

Query:   254 GVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAWRLVEQD 296
             G++P+D ++I STN+G PLV+ +  ++ GLAF+  A RL  QD
Sbjct:   200 GILPDDQKIIISTNKGEPLVMEEKLSVPGLAFQNIARRLEGQD 242

GO:0000918 "barrier septum site selection" evidence=IDA

GO:0016020 "membrane" evidence=IDA

UNIPROTKB|Q3AF73 minD "Site-determining protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 90/241 (37%), Positives = 146/241 (60%)

Query:    74 SLARLGFSVVAIDAXXXXXXXXXXXXXXXXXNYTVVEVLNGDCRLDQALVRDKRWSNFEL 133
             +LA +G  VV +D                   Y +V+V++G+CRL QAL++DKR     L
Sbjct:    26 ALAMMGQKVVLVDTDIGLRNLDVVLGLENRIVYDLVDVVHGNCRLKQALIKDKRLEGLYL 85

Query:   134 LCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAV 193
             L  ++ + K  +    + +  +V  LK       D++LIDCPAGI+ GF  A+  A+  +
Sbjct:    86 LPAAQTKDKTAVS--PEQMRNLVSDLKKEF----DYVLIDCPAGIEQGFKNAVAGADRGI 139

Query:   194 LVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL 253
             +VTTP+++++RDADR+ GLLE +GI + ++++NR+R  M++  DMM + DI E+L + LL
Sbjct:   140 VVTTPEVSAVRDADRIIGLLEAEGINNPRLIINRIRPKMVRTGDMMGIEDIIEILAIDLL 199

Query:   254 GVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFF 313
             GVIP+D  +I +TN+G P V ++  + AG AF   A R++ ++ +  + +EEE    GFF
Sbjct:   200 GVIPDDETIIVTTNKGEPAVYDQN-SRAGQAFRNIARRIMGEE-VPLMNLEEE----GFF 253

Query:   314 S 314
             S
Sbjct:   254 S 254

GO:0000910 "cytokinesis" evidence=ISS

GO:0004857 "enzyme inhibitor activity" evidence=ISS

GO:0043086 "negative regulation of catalytic activity" evidence=ISS

TIGR_CMR|CHY_0348 CHY_0348 "septum site-determining protein MinD" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 90/241 (37%), Positives = 146/241 (60%)

Query:    74 SLARLGFSVVAIDAXXXXXXXXXXXXXXXXXNYTVVEVLNGDCRLDQALVRDKRWSNFEL 133
             +LA +G  VV +D                   Y +V+V++G+CRL QAL++DKR     L
Sbjct:    26 ALAMMGQKVVLVDTDIGLRNLDVVLGLENRIVYDLVDVVHGNCRLKQALIKDKRLEGLYL 85

Query:   134 LCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAV 193
             L  ++ + K  +    + +  +V  LK       D++LIDCPAGI+ GF  A+  A+  +
Sbjct:    86 LPAAQTKDKTAVS--PEQMRNLVSDLKKEF----DYVLIDCPAGIEQGFKNAVAGADRGI 139

Query:   194 LVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL 253
             +VTTP+++++RDADR+ GLLE +GI + ++++NR+R  M++  DMM + DI E+L + LL
Sbjct:   140 VVTTPEVSAVRDADRIIGLLEAEGINNPRLIINRIRPKMVRTGDMMGIEDIIEILAIDLL 199

Query:   254 GVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFF 313
             GVIP+D  +I +TN+G P V ++  + AG AF   A R++ ++ +  + +EEE    GFF
Sbjct:   200 GVIPDDETIIVTTNKGEPAVYDQN-SRAGQAFRNIARRIMGEE-VPLMNLEEE----GFF 253

Query:   314 S 314
             S
Sbjct:   254 S 254

GO:0000910 "cytokinesis" evidence=ISS

GO:0004857 "enzyme inhibitor activity" evidence=ISS

TIGR_CMR|BA_4680 BA_4680 "septum site-determining protein MinD" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 87/214 (40%), Positives = 137/214 (64%)

Query:   106 YTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEG 165
             + +V+V+ G CRL QAL++DKR+ +  LL  ++   K  +    + +  +++ L  RQ+ 
Sbjct:    58 FDLVDVVEGRCRLPQALIKDKRFDDLYLLPAAQTSDKSAVT--PEQMDELIQVL--RQDY 113

Query:   166 SPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVV 225
               D+ILIDCPAGI+ GF  A+  A++A++VTTP+++S+RDADR+ GLLE + I   K+V+
Sbjct:   114 --DYILIDCPAGIEQGFKNAVAGADKAIVVTTPEVSSMRDADRIIGLLEKEDIEPPKLVI 171

Query:   226 NRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAF 285
             NRVR+ M+  +DM+ V +I   L + LLGV+ +D EVIR+TN G P+ L +P   A LA+
Sbjct:   172 NRVRSHMLHEQDMLDVDEIVRTLSIELLGVVEDDDEVIRATNTGEPVAL-QPSGKAALAY 230

Query:   286 EQAAWRLV-EQDSMKAVMVEEEPKRRGFFSFFGL 318
                A RL+ E   ++A   E+        +FFG+
Sbjct:   231 RNIARRLLGENVPLQAFEQEKVSVFTKMKNFFGI 264

GO:0007105 "cytokinesis, site selection" evidence=ISS

GO:0016887 "ATPase activity" evidence=ISS

TIGR_CMR|CPS_2582 CPS_2582 "septum site-determining protein MinD" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 85/254 (33%), Positives = 137/254 (53%)

Query:    73 LSLARLGFSVVAIDAXXXXXXXXXXXXXXXXXNYTVVEVLNGDCRLDQALVRDKRWSNFE 132
             L LA  G  VV ID                   Y  V V+NG+  L+QAL++DKR S+  
Sbjct:    25 LGLALKGHKVVLIDFDIGLRNLDLIMGCERRVVYDFVNVINGEATLNQALIKDKRVSSLS 84

Query:   133 LLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEA 192
             +L  S+ R K  L    + +  V+E L        DFI+ D PAGI+AG + A+  A+EA
Sbjct:    85 ILPASQTRDKDALN--KENVGKVLEELGKTY----DFIVCDSPAGIEAGAMMALYYADEA 138

Query:   193 VLVTTPDITSLRDADRVTGLLECD------GIRDIK--MVVNRVRTDMIKGEDMMSVLDI 244
             ++ T P+++S+RD+DR+ G+L         G+  IK  +++ R     ++  +M+SV D+
Sbjct:   139 IVTTNPEVSSVRDSDRILGMLASRSRRAELGLEPIKEHLLLTRYSPKRVEEGEMLSVEDV 198

Query:   245 QEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAWRLVEQDSMKAVMVE 304
             +++L + LLGVIPE   V++++N G P++L+     AG A++    RL+ +      +V 
Sbjct:   199 EDILSIPLLGVIPESQAVLKASNAGEPVILDTESD-AGKAYQDVIERLLGETVEFRFLVA 257

Query:   305 EEPKRRGFFS-FFG 317
             E   ++G FS  FG
Sbjct:   258 E---KKGIFSRMFG 268

GO:0000918 "barrier septum site selection" evidence=ISS

GO:0016887 "ATPase activity" evidence=ISS

UNIPROTKB|P0AEZ3 minD [Escherichia coli K-12 (taxid:83333)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 86/252 (34%), Positives = 134/252 (53%)

Query:    75 LARLGFSVVAIDAXXXXXXXXXXXXXXXXXNYTVVEVLNGDCRLDQALVRDKRWSNFELL 134
             LA+ G   V ID                   Y  V V+ GD  L+QAL++DKR  N  +L
Sbjct:    27 LAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTENLYIL 86

Query:   135 CISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVL 194
               S+ R K  L   G A   V++ LK+      +FI+ D PAGI+ G + A+  A+EA++
Sbjct:    87 PASQTRDKDALTREGVAK--VLDDLKAMDF---EFIVCDSPAGIETGALMALYFADEAII 141

Query:   195 VTTPDITSLRDADRVTGLLEC------DGIRDIK--MVVNRVRTDMIKGEDMMSVLDIQE 246
              T P+++S+RD+DR+ G+L        +G   IK  +++ R     +   DM+S+ D+ E
Sbjct:   142 TTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLE 201

Query:   247 MLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAWRLVEQDSMKAVMVEEE 306
             +L + L+GVIPED  V+R++N+G P++L+     AG A+     RL+ ++      +EEE
Sbjct:   202 ILRIKLVGVIPEDQSVLRASNQGEPVILDINAD-AGKAYADTVERLLGEERPFR-FIEEE 259

Query:   307 PKRRGFFS-FFG 317
              K  GF    FG
Sbjct:   260 KK--GFLKRLFG 269

GO:0005524 "ATP binding" evidence=IEA;IDA

GO:0016887 "ATPase activity" evidence=IEA;IDA

GO:0005886 "plasma membrane" evidence=IEA;EXP

GO:0006200 "ATP catabolic process" evidence=IEA

GO:0000918 "barrier septum site selection" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0051301 "cell division" evidence=IEA

GO:0000917 "barrier septum assembly" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

UNIPROTKB|Q9KQN8 VC_1960 "Site-determining protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 77/221 (34%), Positives = 124/221 (56%)

Query:   106 YTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEG 165
             Y  V V+NG+  L+QAL++DKR  N  +L  S+ R K  L   G     V   L   +E 
Sbjct:    64 YDFVNVINGEATLNQALIKDKRNENLFILPASQTRDKDALTKDG-----VQRVLNDLKEM 118

Query:   166 SPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIR------ 219
               DFI+ D PAGI+ G + A+  A+EA++ T P+++S+RD+DR+ G+L+   +R      
Sbjct:   119 GFDFIICDSPAGIEQGALMALYYADEAIVTTNPEVSSVRDSDRILGILDSKSMRAEQGQA 178

Query:   220 DIK--MVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKP 277
              IK  +++ R     +   +M+SV D++E+L + LLGVIPE   V+ ++N+G P++ +  
Sbjct:   179 PIKQHLLLTRYNPARVTQGEMLSVQDVEEILHVPLLGVIPESQAVLNASNKGVPVIFDDQ 238

Query:   278 PTLAGLAFEQAAWRLV-EQDSMKAVMVEEEPKRRGFFSFFG 317
                AG A++    RL+ EQ   + +    E K+  F   FG
Sbjct:   239 SD-AGQAYQDTVARLLGEQVEFRFLT---EAKKGIFKRLFG 275

GO:0000910 "cytokinesis" evidence=ISS

TIGR_CMR|VC_1960 VC_1960 "septum site-determining protein MinD" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 77/221 (34%), Positives = 124/221 (56%)

Query:   106 YTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEG 165
             Y  V V+NG+  L+QAL++DKR  N  +L  S+ R K  L   G     V   L   +E 
Sbjct:    64 YDFVNVINGEATLNQALIKDKRNENLFILPASQTRDKDALTKDG-----VQRVLNDLKEM 118

Query:   166 SPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIR------ 219
               DFI+ D PAGI+ G + A+  A+EA++ T P+++S+RD+DR+ G+L+   +R      
Sbjct:   119 GFDFIICDSPAGIEQGALMALYYADEAIVTTNPEVSSVRDSDRILGILDSKSMRAEQGQA 178

Query:   220 DIK--MVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKP 277
              IK  +++ R     +   +M+SV D++E+L + LLGVIPE   V+ ++N+G P++ +  
Sbjct:   179 PIKQHLLLTRYNPARVTQGEMLSVQDVEEILHVPLLGVIPESQAVLNASNKGVPVIFDDQ 238

Query:   278 PTLAGLAFEQAAWRLV-EQDSMKAVMVEEEPKRRGFFSFFG 317
                AG A++    RL+ EQ   + +    E K+  F   FG
Sbjct:   239 SD-AGQAYQDTVARLLGEQVEFRFLT---EAKKGIFKRLFG 275

GO:0000910 "cytokinesis" evidence=ISS

TIGR_CMR|SO_2577 SO_2577 "septum site-determining protein MinD" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 75/221 (33%), Positives = 124/221 (56%)

Query:   106 YTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEG 165
             Y  V V+NG+  L+QAL++DKR     +L  S+ R K  L   G     V++ L    E 
Sbjct:    58 YDFVNVINGEANLNQALIKDKRCEKLYVLPASQTRDKDALTKEGVGR--VLDDLAKEFE- 114

Query:   166 SPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIR------ 219
                FI+ D PAGI+ G + A+  A+ A++ T P+++S+RD+DR+ G+L+    R      
Sbjct:   115 ---FIICDSPAGIEQGAMMALYFADIAIVTTNPEVSSVRDSDRILGMLQSKSRRAELSLE 171

Query:   220 DIK--MVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKP 277
              IK  +++ R     +K  +M+SV D++E+L + LLGVIPE   V++++N G P+++++ 
Sbjct:   172 PIKEYLLLTRYSPSRVKSGEMLSVDDVKEILAIDLLGVIPESQSVLKASNSGVPVIIDQE 231

Query:   278 PTLAGLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFS-FFG 317
                AG A+     RL+ +D     + EE   ++GF    FG
Sbjct:   232 SD-AGAAYSDTVARLLGEDVPVRFITEE---KKGFLQRIFG 268

GO:0000918 "barrier septum site selection" evidence=ISS

GO:0016887 "ATPase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9MBA2	MIND1_ARATH	No assigned EC number	0.9206	0.8529	0.8895	yes	no
O78436	MIND_GUITH	No assigned EC number	0.5813	0.7058	0.8921	yes	no
Q20EV4	MIND_OLTVI	No assigned EC number	0.5566	0.8735	0.9398	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	340
CHL00175	281	CHL00175, minD, septum-site determining protein; V	1e-128
TIGR01968	261	TIGR01968, minD_bact, septum site-determining prot	1e-109
COG2894	272	COG2894, MinD, Septum formation inhibitor-activati	3e-99
cd02036	179	cd02036, MinD, Bacterial cell division requires th	7e-88
PRK10818	270	PRK10818, PRK10818, cell division inhibitor MinD;	1e-57
TIGR01969	251	TIGR01969, minD_arch, cell division ATPase MinD, a	6e-43
COG0455	262	COG0455, flhG, Antiactivator of flagellar biosynth	3e-42
pfam01656	217	pfam01656, CbiA, CobQ/CobB/MinD/ParA nucleotide bi	4e-31
COG1149	284	COG1149, COG1149, MinD superfamily P-loop ATPase c	1e-21
COG1192	259	COG1192, Soj, ATPases involved in chromosome parti	2e-21
COG0489	265	COG0489, Mrp, ATPases involved in chromosome parti	3e-19
cd03110	179	cd03110, Fer4_NifH_child, This protein family's fu	9e-19
COG3640	255	COG3640, CooC, CO dehydrogenase maturation factor	8e-15
cd02038	139	cd02038, FleN-like, FleN is a member of the Fer4_N	2e-14
COG4963	366	COG4963, CpaE, Flp pilus assembly protein, ATPase	2e-14
TIGR03371	246	TIGR03371, cellulose_yhjQ, cellulose synthase oper	5e-13
pfam13614	145	pfam13614, AAA_31, AAA domain	4e-12
TIGR01007	204	TIGR01007, eps_fam, capsular exopolysaccharide fam	2e-11
cd02037	169	cd02037, MRP-like, MRP (Multiple Resistance and pH	1e-10
cd02042	104	cd02042, ParA, ParA and ParB of Caulobacter cresce	1e-10
TIGR03815	322	TIGR03815, CpaE_hom_Actino, helicase/secretion nei	5e-10
cd02038	139	cd02038, FleN-like, FleN is a member of the Fer4_N	2e-09
cd01983	99	cd01983, Fer4_NifH, The Fer4_NifH superfamily cont	2e-08
pfam09140	262	pfam09140, MipZ, ATPase MipZ	4e-08
cd03111	106	cd03111, CpaE_like, This protein family consists o	3e-07
TIGR01281	268	TIGR01281, DPOR_bchL, light-independent protochlor	7e-07
TIGR03453	387	TIGR03453, partition_RepA, plasmid partitioning pr	1e-06
cd02034	116	cd02034, CooC, The accessory protein CooC, which c	2e-06
cd02035	217	cd02035, ArsA, ArsA ATPase functionas as an efflux	3e-06
PRK11670	369	PRK11670, PRK11670, antiporter inner membrane prot	6e-06
PRK13869	405	PRK13869, PRK13869, plasmid-partitioning protein R	5e-05
pfam06564	244	pfam06564, YhjQ, YhjQ protein	7e-05
cd02032	267	cd02032, Bchl_like, This family of proteins contai	8e-05
cd01983	99	cd01983, Fer4_NifH, The Fer4_NifH superfamily cont	3e-04
COG0003	322	COG0003, ArsA, Predicted ATPase involved in chromo	5e-04
cd03111	106	cd03111, CpaE_like, This protein family consists o	7e-04
COG1348	278	COG1348, NifH, Nitrogenase subunit NifH (ATPase) [	7e-04
PRK13185	270	PRK13185, chlL, protochlorophyllide reductase iron	9e-04
pfam02374	304	pfam02374, ArsA_ATPase, Anion-transporting ATPase	0.002
TIGR04291	566	TIGR04291, arsen_driv_ArsA, arsenical pump-driving	0.002
CHL00072	290	CHL00072, chlL, photochlorophyllide reductase subu	0.004
PHA02518	211	PHA02518, PHA02518, ParA-like protein; Provisional	0.004
cd02117	212	cd02117, NifH_like, This family contains the NifH	0.004

>gnl|CDD|214385 CHL00175, minD, septum-site determining protein; Validated

 Score =  366 bits (942), Expect = e-128
 Identities = 162/247 (65%), Positives = 197/247 (79%), Gaps = 5/247 (2%)

Query: 49  TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTV 108
             R++VITSGKGGVGKTTTTAN+G+S+ARLG+ V  IDAD+GLRNLDLLLGLENRV YT 
Sbjct: 14  MSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDLLLGLENRVLYTA 73

Query: 109 VEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPD 168
           ++VL G+CRLDQAL+RDKRW N  LL ISK R +  +    K +  +V++LK+R     D
Sbjct: 74  MDVLEGECRLDQALIRDKRWKNLSLLAISKNRQRYNVT--RKNMNMLVDSLKNRGY---D 128

Query: 169 FILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRV 228
           +ILIDCPAGID GFI AI PA EA++VTTP+IT++RDADRV GLLE +GI ++K++VNRV
Sbjct: 129 YILIDCPAGIDVGFINAIAPAQEAIVVTTPEITAIRDADRVAGLLEANGIYNVKLLVNRV 188

Query: 229 RTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQA 288
           R DMI+  DMMSV D+QEMLG+ LLG IPED  VI STNRG PLVLNK  TL+G+AFE A
Sbjct: 189 RPDMIQANDMMSVRDVQEMLGIPLLGAIPEDENVIISTNRGEPLVLNKKLTLSGIAFENA 248

Query: 289 AWRLVEQ 295
           A RLV +
Sbjct: 249 ARRLVGK 255

Length = 281

>gnl|CDD|131023 TIGR01968, minD_bact, septum site-determining protein MinD

 Score =  318 bits (816), Expect = e-109
 Identities = 139/264 (52%), Positives = 192/264 (72%), Gaps = 10/264 (3%)

Query: 51  RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVE 110
           RV+VITSGKGGVGKTTTTAN+G +LARLG  VV IDAD+GLRNLDLLLGLENR+ YT+V+
Sbjct: 2   RVIVITSGKGGVGKTTTTANLGTALARLGKKVVLIDADIGLRNLDLLLGLENRIVYTLVD 61

Query: 111 VLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFI 170
           V+ G+CRL QAL++DKR  N  LL  S+ R K  +    + +  +V  LK       D++
Sbjct: 62  VVEGECRLQQALIKDKRLKNLYLLPASQTRDKDAVT--PEQMKKLVNELKEEF----DYV 115

Query: 171 LIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRT 230
           +IDCPAGI++GF  A+ PA+EA++VTTP+++++RDADRV GLLE  GI  I ++VNR+R 
Sbjct: 116 IIDCPAGIESGFRNAVAPADEAIVVTTPEVSAVRDADRVIGLLEAKGIEKIHLIVNRLRP 175

Query: 231 DMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAW 290
           +M+K  DM+SV D+ E+L + L+GVIPED  +I STN+G P+VLN   + AG AFE  A 
Sbjct: 176 EMVKKGDMLSVDDVLEILSIPLIGVIPEDEAIIVSTNKGEPVVLND-KSRAGKAFENIAR 234

Query: 291 RLVEQDSMKAVMVEEEPKRRGFFS 314
           R++ ++       +   +++GFF+
Sbjct: 235 RILGEE---VPFEDLTTQKKGFFA 255

This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model [Cellular processes, Cell division]. Length = 261

>gnl|CDD|225447 COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]

 Score =  293 bits (753), Expect = 3e-99
 Identities = 125/276 (45%), Positives = 182/276 (65%), Gaps = 26/276 (9%)

Query: 51  RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVE 110
           R++V+TSGKGGVGKTTTTAN+G +LA+LG  VV ID D+GLRNLDL++GLENR+ Y +V+
Sbjct: 3   RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNLDLIMGLENRIVYDLVD 62

Query: 111 VLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALT-----WVVEALKSRQEG 165
           V+ G+  L+QAL++DKR  N  LL  S+ R K        ALT      VV  LK     
Sbjct: 63  VIEGEATLNQALIKDKRLENLFLLPASQTRDK-------DALTPEGVKKVVNELK---AM 112

Query: 166 SPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIR------ 219
             D+I+ID PAGI+ GF  A+  A+EA++VT P+++S+RD+DR+ GLLE    R      
Sbjct: 113 DFDYIIIDSPAGIEQGFKNAVYFADEAIVVTNPEVSSVRDSDRIIGLLESKSRRAEIGEE 172

Query: 220 -DIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPP 278
               +++NR R +M+K  +M+SV D+ E+L + L+GVIPED +V+R++N+G P++L+   
Sbjct: 173 PKEHLLLNRYRPEMVKRGEMLSVEDVLEILSIPLIGVIPEDQDVLRASNKGEPVILD-DN 231

Query: 279 TLAGLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFS 314
           + AG A+   A RL+ ++        EE K +GF +
Sbjct: 232 SDAGKAYRDIARRLLGEE--VPFRFLEEEK-KGFLA 264

Length = 272

>gnl|CDD|238993 cd02036, MinD, Bacterial cell division requires the formation of a septum at mid-cell

 Score =  261 bits (669), Expect = 7e-88
 Identities = 125/234 (53%), Positives = 154/234 (65%), Gaps = 55/234 (23%)

Query: 52  VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEV 111
           V+V+TSGKGGVGKTTTTAN+G +LA+LG+ VV IDAD+GLRNLDL+LGLENRV YT+ +V
Sbjct: 1   VIVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLILGLENRVVYTLHDV 60

Query: 112 LNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFIL 171
           L GD                                                     +IL
Sbjct: 61  LAGD-----------------------------------------------------YIL 67

Query: 172 IDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD 231
           ID PAGI+ GFITAI PA+EA+LVTTP+I+SLRDADRV GLLE  GI+ + ++VNRVR D
Sbjct: 68  IDSPAGIERGFITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPD 127

Query: 232 MIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAF 285
           M++G DM  V DI+E+LG+ LLGVIPED  VIR+TNRG P+VLNKP + A  A+
Sbjct: 128 MVEGGDM--VEDIEEILGVPLLGVIPEDPAVIRATNRGEPVVLNKPKSPAAQAY 179

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer. Length = 179

>gnl|CDD|182756 PRK10818, PRK10818, cell division inhibitor MinD; Provisional

 Score =  187 bits (475), Expect = 1e-57
 Identities = 109/276 (39%), Positives = 167/276 (60%), Gaps = 18/276 (6%)

Query: 51  RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVE 110
           R++V+TSGKGGVGKTT++A +   LA+ G   V ID D+GLRNLDL++G E RV Y  V 
Sbjct: 3   RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVN 62

Query: 111 VLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFI 170
           V+ GD  L+QAL++DKR  N  +L  S+ R K  L   G     V + L   +    +FI
Sbjct: 63  VIQGDATLNQALIKDKRTENLYILPASQTRDKDALTREG-----VAKVLDDLKAMDFEFI 117

Query: 171 LIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLEC------DGIRDIK-- 222
           + D PAGI+ G + A+  A+EA++ T P+++S+RD+DR+ G+L        +G   IK  
Sbjct: 118 VCDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEH 177

Query: 223 MVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAG 282
           +++ R     +   DM+S+ D+ E+L + L+GVIPED  V+R++N+G P++L+     AG
Sbjct: 178 LLLTRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVILDIEAD-AG 236

Query: 283 LAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFS-FFG 317
            A+     RL+ ++      +EEE  ++GF    FG
Sbjct: 237 KAYADTVDRLLGEER-PFRFIEEE--KKGFLKRLFG 269

Length = 270

>gnl|CDD|131024 TIGR01969, minD_arch, cell division ATPase MinD, archaeal

 Score =  148 bits (376), Expect = 6e-43
 Identities = 89/250 (35%), Positives = 140/250 (56%), Gaps = 26/250 (10%)

Query: 51  RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVE 110
           R++ I SGKGG GKTT TAN+G++LA+LG  V+A+DAD+ + NL+L+LG+E+    T+ +
Sbjct: 1   RIITIASGKGGTGKTTITANLGVALAKLGKKVLALDADITMANLELILGMED-KPVTLHD 59

Query: 111 VLNGDCRLDQALVRDKRWS-------NFELLCISKPRSKLPLGFGGKALTWVVEALKSRQ 163
           VL G+  +  A+              + E L  + P  KL           V++ +    
Sbjct: 60  VLAGEADIKDAIYEGPFGVKVIPAGVSLEGLRKADPD-KLED---------VLKEII--- 106

Query: 164 EGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKM 223
               DF+LID PAG++   +TA+  A+E +LV  P+I+S+ DA +   + E  G   + +
Sbjct: 107 -DDTDFLLIDAPAGLERDAVTALAAADELLLVVNPEISSITDALKTKIVAEKLGTAILGV 165

Query: 224 VVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGL 283
           V+NRV  D  K E  +   +I+ +L + +LGV+PED EV R+   G P+V+  P + A  
Sbjct: 166 VLNRVTRD--KTE--LGREEIETILEVPVLGVVPEDPEVRRAAAFGEPVVIYNPNSPAAQ 221

Query: 284 AFEQAAWRLV 293
           AF + A  L 
Sbjct: 222 AFMELAAELA 231

This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown. Length = 251

>gnl|CDD|223531 COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]

 Score =  147 bits (372), Expect = 3e-42
 Identities = 95/270 (35%), Positives = 145/270 (53%), Gaps = 19/270 (7%)

Query: 50  PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVV-AIDADVGLRNLDLLLGLENRVNYTV 108
            +V+ + SGKGGVGKTT TAN+G +LA LG  VV  IDAD+GL NL LLLG+E+    T+
Sbjct: 2   TKVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVES-KPTTL 60

Query: 109 VEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPD 168
            +VL G+  ++  +    +     +L       +       + L  V++ L+       D
Sbjct: 61  HDVLAGEASIEDIIYETPQ-DGLYVLP-GGSGLEDLAKLDPEDLEDVIKELEELY----D 114

Query: 169 FILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRD--IKMVVN 226
           +ILID  AG+    ++ I  ++E V+VTTP+ TS+ DA +   +L   G+     ++V+N
Sbjct: 115 YILIDTGAGLSRDTLSFILSSDELVIVTTPEPTSITDAYKTIKILSKLGLDLLGRRVVLN 174

Query: 227 RVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFE 286
           RVR+   K    ++ L IQ +  + +L VIP D EV R+   G P+VL  P + A  A +
Sbjct: 175 RVRS--TKEGVDVAALLIQVVKQVPVLQVIPFDPEVRRALAEGKPIVLYSPNSKASQAIK 232

Query: 287 QAAWRLVEQDSMKAVMVEEEPKRRGFFSFF 316
           + A +L       A + E +  RRGF S  
Sbjct: 233 ELAAKL-------AGLPEPKAPRRGFISKI 255

Length = 262

>gnl|CDD|216631 pfam01656, CbiA, CobQ/CobB/MinD/ParA nucleotide binding domain

 Score =  116 bits (292), Expect = 4e-31
 Identities = 59/217 (27%), Positives = 99/217 (45%), Gaps = 6/217 (2%)

Query: 53  VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVL 112
           + I   KGGVGKTT  AN+  +LA+ G+ V+ ID D    N   L  +E  +   +  V 
Sbjct: 1   IAIAGTKGGVGKTTLAANLARALAKRGYRVLLIDLDPQANNSSYLGKVEEVLPEGLEIVD 60

Query: 113 NGDCRLDQALVRDKR-WSNFELL--CISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDF 169
               +   A +   R      L+   +S    +  L   GK  + +  AL+S  + + D+
Sbjct: 61  AQALQAIAAAIVPSRNLDPLLLIPSNLSLENFESELIVEGKRESRLRAALESLIKLAYDY 120

Query: 170 ILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIK-MVVNRV 228
           ++ID P G+      A+  A+  V+   P+  ++  A R+  L+E  G+ DI  +V+N+V
Sbjct: 121 VIIDGPPGLGELTANALVAADILVVPIEPEGVAVEGAQRLLELIEDLGVLDILGVVLNKV 180

Query: 229 RTDMIKGEDMMSVLDIQE--MLGLALLGVIPEDSEVI 263
                +          ++  +  L LLGVIP D  + 
Sbjct: 181 DRGDERHLKNEIEALERKTGIPVLVLLGVIPRDLGLS 217

This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyze amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family. Length = 217

>gnl|CDD|224071 COG1149, COG1149, MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]

 Score = 92.4 bits (230), Expect = 1e-21
 Identities = 79/290 (27%), Positives = 114/290 (39%), Gaps = 59/290 (20%)

Query: 53  VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLE----NRVNYTV 108
           V + SGKGG GKTT  AN+ + L    + +V  D DV   NL LLLG+E      V    
Sbjct: 4   VAVASGKGGTGKTTVAANLAVLLGD-KYKLVLADCDVEAPNLHLLLGVEVLEEEEVIRGE 62

Query: 109 VEVLNGD-----------CRLDQALV--RDKRWSNFELLC-------ISKP--------- 139
           +  ++ +           CR   A+V     +      LC       I  P         
Sbjct: 63  IPEIDPEKCIRCGKCAEVCRFG-AIVVLPGGKPVLNPDLCEGCGACSIVCPEPAIEEEPV 121

Query: 140 ------RSKLPLGF---------GGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFIT 184
                  SK   GF         G +    +V ALK   +   D ++ID  AG     I 
Sbjct: 122 VIGKIYESKTDYGFPLISGRLNVGEEESGKLVTALKKHAKELADLLIIDSAAGTGCPVIA 181

Query: 185 AITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDI 244
           ++  A+ A+LVT P    L D  R   L+E  GI    +V+NR             + + 
Sbjct: 182 SLKGADLAILVTEPTPFGLHDLKRALELVEHFGIP-TGIVINR------YNLGDSEIEEY 234

Query: 245 QEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAWRLVE 294
            E  G+ +LG IP D ++  +   G P V  +P +    A  + A +L E
Sbjct: 235 CEEEGIPILGEIPYDKDIPEAYVNGEPFV--EPDSKEAEAILEEAEKLKE 282

Length = 284

>gnl|CDD|224113 COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]

 Score = 91.8 bits (228), Expect = 2e-21
 Identities = 54/255 (21%), Positives = 106/255 (41%), Gaps = 14/255 (5%)

Query: 50  PRVVVITSGKGGVGKTTTTANVGLSLARLGF-SVVAIDADVGLRNLDLLLGLENRVNYTV 108
            +++ + + KGGVGKTTT  N+  +LA+ G   V+ ID D    +L   LGL   +   +
Sbjct: 2   MKIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLD-PQGSLTSWLGLRPDLEGDL 60

Query: 109 VEVLNGDCRLDQALVRDKRWSNFELLCISK---PRSKLPLGFGGKALTWVVEALKSRQEG 165
             +L+G       L         +L+  +      +++ L    K L  +   L   ++ 
Sbjct: 61  YNLLSGLKERPDILDYTVVIEGLDLIPSNIDLAEGAEIELNAVAKELL-LKRLLDPVKDD 119

Query: 166 SPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLE------CDGIR 219
             D+I+ID P  +    + A+  A+  ++   P+   L   +++   LE       + + 
Sbjct: 120 Y-DYIIIDTPPSLGVLTLNALAAADHVLIPVQPEFLDLEGLEQLLNTLEDLLKLRRNKLI 178

Query: 220 DIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPT 279
            + +++ R  +     ++++  L  Q +    L   IP       +   G PL    P +
Sbjct: 179 VVGILITRFDSRTKLADEVLQELK-QLLGDPVLKTKIPRRVAYREAAAEGKPLYEYDPKS 237

Query: 280 LAGLAFEQAAWRLVE 294
            A   + + A  L+E
Sbjct: 238 KAAEEYYELAKELLE 252

Length = 259

>gnl|CDD|223563 COG0489, Mrp, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]

 Score = 85.5 bits (212), Expect = 3e-19
 Identities = 58/202 (28%), Positives = 90/202 (44%), Gaps = 26/202 (12%)

Query: 41  RKPELAGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGL 100
               L      V+ +TSGKGGVGK+T   N+  +LA+LG  V+ +DAD+   ++  +LGL
Sbjct: 48  FAKVLRKGVKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSIPRMLGL 107

Query: 101 ENRVNYTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALK 160
           EN     + E+L G+  L+  +  D      ++L I        L  G   +      L 
Sbjct: 108 ENLP--GLTELLAGE-ALEPVIQHD----GIKVLSI--------LPLGPVPVIP-RGLLG 151

Query: 161 SR---------QEGSPDFILIDCPAGIDAGFITAITPANE-AVLVTTPDITSLRDADRVT 210
           S+           G  D+++ID P G      T +    +  V+VTTP  T+L D  +  
Sbjct: 152 SKAMLQLLEDVLWGEYDYVIIDTPPGTGDADATVLQRIPDGVVIVTTPGKTALEDVKKAI 211

Query: 211 GLLECDGIRDIKMVVNRVRTDM 232
            +LE  GI  + +V N      
Sbjct: 212 DMLEKAGIPVLGVVENMSYFIC 233

Length = 265

>gnl|CDD|239384 cd03110, Fer4_NifH_child, This protein family's function is unkown

 Score = 82.3 bits (204), Expect = 9e-19
 Identities = 57/176 (32%), Positives = 78/176 (44%), Gaps = 26/176 (14%)

Query: 53  VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVL 112
           + + SGKGG GKTT TA     LA L  +VV  D DV   NL L L  E       +   
Sbjct: 2   IAVISGKGGTGKTTVTAA----LAALLKNVVLADCDVDAPNLHLFLKPEIEEEEDFIVGG 57

Query: 113 NGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWV-VEALKSRQEGSPDFIL 171
                        K+      LCIS        G  GK +T V   A +  +    + I+
Sbjct: 58  -------------KKAVIDPELCIS-------CGLCGKLVTEVRKHAKEIAKAEGAELII 97

Query: 172 IDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNR 227
           ID P GI    I ++T A+ A+LVT P  + L D +R   L+   GI  + +V+N+
Sbjct: 98  IDGPPGIGCPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIP-VGVVINK 152

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion. Length = 179

>gnl|CDD|226166 COG3640, CooC, CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

 Score = 72.7 bits (179), Expect = 8e-15
 Identities = 72/249 (28%), Positives = 107/249 (42%), Gaps = 44/249 (17%)

Query: 52  VVVITSGKGGVGKTTTTANVGLSLARL----GFSVVAIDADVGLRNLDLLLGLENRVNYT 107
           + +  +GKGGVGKTT  A   L L RL    G++V+ +DAD    NL   LG+E  + Y 
Sbjct: 1   MKIAITGKGGVGKTTIAA---LLLKRLLSKGGYNVLVVDADPDS-NLPEALGVEEPMKY- 55

Query: 108 VVEVLNGDCRLDQALVRDKRWSNFELLCISKPR-SKLPLGFG-----------GK----- 150
               L G   L +     +       +    P  S LP  +            GK     
Sbjct: 56  ----LGGKRELLKKRTGAEPGGPPGEMFKENPLVSDLPDEYLVENGDIDLLVMGKIEEGG 111

Query: 151 ------ALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVL-VTTPDITSL 203
                     +   L+       + +++D  AGI+  F        + V+ V  P   SL
Sbjct: 112 EGCACPMNALLRRLLRHLILNRYEVVIVDTEAGIEH-FGRGTIEGVDLVIVVVDPSYKSL 170

Query: 204 RDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVI 263
           R A+R+  L E  GI+ I +V+N+V  +    E +  +    E LGL +LGVIP D EV+
Sbjct: 171 RTAERIKELAEELGIKRIFVVLNKVDEE---EELLRELA---EELGLEVLGVIPYDPEVV 224

Query: 264 RSTNRGYPL 272
            +  +G PL
Sbjct: 225 EADLKGEPL 233

Length = 255

>gnl|CDD|238995 cd02038, FleN-like, FleN is a member of the Fer4_NifH superfamily

 Score = 68.7 bits (169), Expect = 2e-14
 Identities = 26/45 (57%), Positives = 36/45 (80%)

Query: 52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDL 96
          ++ +TSGKGGVGKT  +AN+ L+LA+LG  V+ +DAD+GL NLD 
Sbjct: 1  IIAVTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANLDY 45

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity. Length = 139

>gnl|CDD|227298 COG4963, CpaE, Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]

 Score = 72.8 bits (179), Expect = 2e-14
 Identities = 71/275 (25%), Positives = 110/275 (40%), Gaps = 26/275 (9%)

Query: 51  RVVVITSGKGGVGKTTTTANVGLSLA-RLGFSVVAIDADVGLRNLDLLLGLENRVNYTVV 109
           R +     KGGVG +T   N+   LA   G +V+ +D D+      L L  +    + + 
Sbjct: 105 RELAFLGAKGGVGTSTLAHNLAKGLAILSGAAVLLVDLDLQGGTAALYLDQDP--AFGIA 162

Query: 110 EVLNGDCRLDQALVRD---KRWSNFELL-CISKPRSKLPLGFGGKALTWVVEALKSRQEG 165
           E +    RLDQ L+     +  S  +LL   ++      L  G       VE L     G
Sbjct: 163 EAVKQPERLDQVLLDSLLTRLASGLKLLAAPTELAKNYDLKTG------AVERLLDLLRG 216

Query: 166 SPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRD--IKM 223
           S DF+++D P          ++ ++E V+V  P + SLR+A  +   L+     D    +
Sbjct: 217 SFDFVVVDLPNIWTDWTRQVLSGSDEIVIVAEPSLASLRNAKELLDELKRLRPNDPKPIL 276

Query: 224 VVNRVRTDM-IKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAG 282
           V+NRV      +  D+  +L I+ +L L     +  D     + N G  L    P + A 
Sbjct: 277 VLNRVGVPKRPEPSDLEEILGIESLLVLPFDPALFGD-----AANNGRMLSEVDPGSPAA 331

Query: 283 LAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFSFFG 317
            A  Q A  L  + S      E   K RG     G
Sbjct: 332 KALAQLAQSLGGRIS-----GERRKKLRGLGKLLG 361

Length = 366

>gnl|CDD|234188 TIGR03371, cellulose_yhjQ, cellulose synthase operon protein YhjQ

 Score = 67.4 bits (165), Expect = 5e-13
 Identities = 66/241 (27%), Positives = 98/241 (40%), Gaps = 31/241 (12%)

Query: 52  VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEV 111
           V+ I S +GGVGKTT TAN+  +L  LG  V+AID D        LL L   ++++V + 
Sbjct: 3   VIAIVSVRGGVGKTTLTANLASALKLLGEPVLAIDLDP-----QNLLRLHFGMDWSVRDG 57

Query: 112 LNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALT-----------WVVEALK 160
                    AL+  + W+             L L +G  +             W+   L+
Sbjct: 58  WAR------ALLNGEPWAAAAYRSPD---GVLFLPYGDLSADEREAYQAHDAGWLARLLQ 108

Query: 161 SRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITS-LRDADRVTGLLECDGIR 219
                + D++LID P G       A+  A+  ++V   D             L    G R
Sbjct: 109 QLDLAARDWVLIDLPRGPSPITRQALAAADLVLVVVNADAACYATLHQLALALFAGSGPR 168

Query: 220 D-IKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL-GVIPEDSEVIRSTNRGYPLVLNKP 277
           D    ++N+         D+ +VL  ++ LG  LL  VI  D  V  +  RG P VLN  
Sbjct: 169 DGPHFLINQFDPARQLSRDVRAVL--RQTLGSRLLPFVIHRDEAVSEALARGTP-VLNYA 225

Query: 278 P 278
           P
Sbjct: 226 P 226

Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PMID:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 246

>gnl|CDD|222264 pfam13614, AAA_31, AAA domain

 Score = 62.6 bits (153), Expect = 4e-12
 Identities = 42/155 (27%), Positives = 70/155 (45%), Gaps = 12/155 (7%)

Query: 51  RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVE 110
           +V+ + S  GG GKTT   N+  SLA  G  V+ +D +    +L L LGLE      + +
Sbjct: 1   KVIGVYSPVGGEGKTTFALNLAQSLAEEGPKVLYLDLEEYSGDLALFLGLE---PKGLSD 57

Query: 111 VLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPL-GFGGKALTWVVEALKSRQEGSPDF 169
           +L    RLD  L++        L  ++ PR+   L     +    ++E L+ R     D 
Sbjct: 58  LLYYLKRLDSMLIQAM----GGLDYLAPPRNPEDLREVSPEEWEQLLERLRERY----DV 109

Query: 170 ILIDCPAGIDAGFITAITPANEAVLVTTPDITSLR 204
           I++D    + + F   ++  +   LV   D+ S R
Sbjct: 110 IVLDLGPLVPSDFALVLSLCDRVYLVVRADVASKR 144

This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop. Length = 145

>gnl|CDD|130080 TIGR01007, eps_fam, capsular exopolysaccharide family

 Score = 62.1 bits (151), Expect = 2e-11
 Identities = 52/193 (26%), Positives = 87/193 (45%), Gaps = 15/193 (7%)

Query: 44  ELAGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENR 103
           + +G   +V++ITS K G GK+TT+AN+ ++ A+ G+  + ID D  +RN  +    +++
Sbjct: 11  QFSGAEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGD--MRNSVMSGTFKSQ 68

Query: 104 VNYT-VVEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGF-GGKALTWVVEALKS 161
              T +   L+G   L  A+  D    N  ++  S P    P           ++E L+ 
Sbjct: 69  NKITGLTNFLSGTTDLSDAI-CDTNIENLFVIT-SGPVPPNPTELLQSSNFKTLIETLRK 126

Query: 162 RQEGSPDFILIDCP---AGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGI 218
                 D+I+ID P      DA  I     A  ++LVT       RD  +    LE  G 
Sbjct: 127 YF----DYIIIDTPPIGTVTDAAIIARACDA--SILVTDAGEIKKRDVQKAKEQLEQTGS 180

Query: 219 RDIKMVVNRVRTD 231
             + +V+N+V   
Sbjct: 181 NFLGVVLNKVDIS 193

This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 204

>gnl|CDD|238994 cd02037, MRP-like, MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily

 Score = 59.0 bits (144), Expect = 1e-10
 Identities = 20/38 (52%), Positives = 29/38 (76%)

Query: 52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89
          V+ + SGKGGVGK+T   N+ L+LA+LG+ V  +DAD+
Sbjct: 1  VIAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADI 38

Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter. Length = 169

>gnl|CDD|238997 cd02042, ParA, ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

 Score = 57.2 bits (139), Expect = 1e-10
 Identities = 19/37 (51%), Positives = 25/37 (67%)

Query: 52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88
          V+ + + KGGVGKTTT  N+  +LAR G  V+ ID D
Sbjct: 1  VIAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLD 37

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition. Length = 104

>gnl|CDD|234363 TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein

 Score = 59.7 bits (145), Expect = 5e-10
 Identities = 63/247 (25%), Positives = 101/247 (40%), Gaps = 16/247 (6%)

Query: 40  NRKPELAGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLG 99
               +       VV +  G+GG G +T  A + L+ AR G   + +DAD     LDLLLG
Sbjct: 83  ADLDQSPPARGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLVDADPWGGGLDLLLG 142

Query: 100 LENRVNYTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALT--WVVE 157
            E+       ++     RL    +RD       L  +S  R+       G AL    V  
Sbjct: 143 AEDVPGLRWPDLSQARGRLPAGALRDALPRRGGLSVLSWGRA------VGAALPPAAVRA 196

Query: 158 ALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDG 217
            L + + G  D +++D P  +     TA+  A+  ++V   D+ ++  A RV   L    
Sbjct: 197 VLDAARRGG-DLVVVDLPRRLTPAAETALESADLVLVVVPADVRAVAAAARVCPELG-RR 254

Query: 218 IRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKP 277
             D+++VV             +   +I E LGL LLG + +   + R+  RG     ++ 
Sbjct: 255 NPDLRLVVRG------PAPAGLDPEEIAESLGLPLLGEVRDQRGLARALERGGLPAASRR 308

Query: 278 PTLAGLA 284
             L   A
Sbjct: 309 RPLGRAA 315

Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PMID:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria. Length = 322

>gnl|CDD|238995 cd02038, FleN-like, FleN is a member of the Fer4_NifH superfamily

 Score = 55.2 bits (134), Expect = 2e-09
 Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 6/95 (6%)

Query: 168 DFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADR-VTGLLECDGIRDIKMVVN 226
           D+I+ID  AGI    +     A+E ++VTTP+ TS+ DA   +  L +   + + ++VVN
Sbjct: 46  DYIIIDTGAGISDNVLDFFLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVN 105

Query: 227 RVRTDMIKGEDMMSVL--DIQEMLG--LALLGVIP 257
           R      +G+ +   L       LG  L  LG IP
Sbjct: 106 RAE-SPKEGKKVFKRLSNVSNRFLGLSLDYLGFIP 139

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity. Length = 139

>gnl|CDD|238941 cd01983, Fer4_NifH, The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

 Score = 50.9 bits (122), Expect = 2e-08
 Identities = 27/67 (40%), Positives = 35/67 (52%), Gaps = 6/67 (8%)

Query: 53  VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV------GLRNLDLLLGLENRVNY 106
           V++ +GKGGVGKTT  AN+  +LA+ G  V+ ID  V      GL  L LL  L      
Sbjct: 1   VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLIDDYVLIDTPPGLGLLVLLCLLALLAAD 60

Query: 107 TVVEVLN 113
            V+ V  
Sbjct: 61  LVIIVTT 67

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. Length = 99

>gnl|CDD|220125 pfam09140, MipZ, ATPase MipZ

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 42/152 (27%), Positives = 62/152 (40%), Gaps = 26/152 (17%)

Query: 51  RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVE 110
            V+V+ + KGG GK+TT  +V ++L  LG  V  ID D  LR   L    ENR  +    
Sbjct: 1   HVIVVGNEKGGSGKSTTAVHVAVALLYLGARVATIDLD--LRQRTLTRYFENRAAW---- 54

Query: 111 VLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFI 170
                  LD  + +     + E+  +    S               EA  +  E   DFI
Sbjct: 55  --AERTGLDLPVPKHLCLPDGEVSEVFDGESADDARL---------EAAVADLEQEADFI 103

Query: 171 LIDCPAGIDAGFI--------TAITPANEAVL 194
           +ID P G D+           T +TP N++ +
Sbjct: 104 VIDTP-GSDSALSRLAHSRADTLVTPLNDSFV 134

MipZ is an ATPase that forms a complex with the chromosome partitioning protein ParB near the chromosomal origin of replication. It is responsible for the temporal and spatial regulation of FtsZ ring formation. Length = 262

>gnl|CDD|239385 cd03111, CpaE_like, This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

 Score = 47.7 bits (114), Expect = 3e-07
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 3/63 (4%)

Query: 168 DFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRD---IKMV 224
           D++++D    +D   + A+  A+   LVT  D+ S+R+A R+  LL          I++V
Sbjct: 44  DYVVVDLGRSLDEVSLAALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELV 103

Query: 225 VNR 227
           +NR
Sbjct: 104 LNR 106

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome. Length = 106

>gnl|CDD|130348 TIGR01281, DPOR_bchL, light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein

 Score = 49.4 bits (118), Expect = 7e-07
 Identities = 60/229 (26%), Positives = 104/229 (45%), Gaps = 30/229 (13%)

Query: 58  GKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNG-DC 116
           GKGG+GK+TT++N+ ++ A+LG  V+ I  D      D    L  R+  TV++VL   + 
Sbjct: 7   GKGGIGKSTTSSNLSVAFAKLGKRVLQIGCD---PKHDSTFTLTGRLIPTVIDVLQAVNY 63

Query: 117 RLDQALVRDKRWSNFE-LLCISKPRSKLPLGFGGKALTWVVEALKSRQE-GSPDFILIDC 174
             +     D  ++ +  + C+         G GG  +   V+ LK        D IL D 
Sbjct: 64  HYEDVRPEDVIYTGYGGVDCVEAGGPPAGSGCGGYVVGETVKLLKEHHILDDYDVILFDV 123

Query: 175 PAGID-AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIR------DIKM---V 224
              +   GF T +  A+ A++V   D  +L  A+R+        ++      D+++   +
Sbjct: 124 LGDVVCGGFATPLQYADYALVVAANDFDALFAANRI-----AASVQEKAKNYDVRLAGII 178

Query: 225 VNRV-RTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPL 272
            NR   TD+I+           E +G+ +LGV+P+   + RS  +G  L
Sbjct: 179 GNRSDATDLIE--------RFNERVGMPVLGVVPDLEVIRRSRVKGKTL 219

The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 268

>gnl|CDD|234215 TIGR03453, partition_RepA, plasmid partitioning protein RepA

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 55/170 (32%), Positives = 80/170 (47%), Gaps = 25/170 (14%)

Query: 46  AGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVN 105
            GE  +V+ +T+ KGG GKTTT A++   LA  G+ V+AID D    +L  L G +   +
Sbjct: 100 GGEHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDPQ-ASLSALFGYQPEFD 158

Query: 106 YTVVEVLNGDCRLDQA------LVRDKRWSNFELLC---------ISKPRSKLPLGFGGK 150
               E L G  R D        ++R   +   +L+             PR+ L  G GG 
Sbjct: 159 VGENETLYGAIRYDDERRPISEIIRKTYFPGLDLVPGNLELMEFEHETPRA-LSRGQGGD 217

Query: 151 ALTW--VVEALKSRQEGSPDFILIDCPAGIDAGFIT--AITPANEAVLVT 196
            + +  V EAL    E   D ++IDCP  +  GF+T  A+  A   VL+T
Sbjct: 218 TIFFARVGEALAE-VEDDYDVVVIDCPPQL--GFLTLSALCAAT-GVLIT 263

Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error [Mobile and extrachromosomal element functions, Plasmid functions]. Length = 387

>gnl|CDD|238991 cd02034, CooC, The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH)

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 24/54 (44%), Positives = 29/54 (53%), Gaps = 11/54 (20%)

Query: 57 SGKGGVGKTTTTANVGLSLARLGFSVVAIDAD-----------VGLRNLDLLLG 99
          +GKGGVGKTT  A +   LA  G  V+AIDAD           VG   L L++G
Sbjct: 5  TGKGGVGKTTIAALLARYLAEKGKPVLAIDADPDDLPERLSVEVGEIKLLLVMG 58

CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function. Length = 116

>gnl|CDD|238992 cd02035, ArsA, ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell

 Score = 47.2 bits (113), Expect = 3e-06
 Identities = 51/204 (25%), Positives = 68/204 (33%), Gaps = 52/204 (25%)

Query: 53  VVITSGKGGVGKTTTTANVGLSLARLGFSV--VAID-----ADVGLRNLDLLLGLEN--- 102
           V+  +GKGGVGKTT  A   + LA  G  V  V+ D     +D GL NL     +E+   
Sbjct: 1   VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHNLSDKGLPNLSDAFIVEDPEI 60

Query: 103 RVNYTVVEVLNGDCRLDQALVRDKRWSNF--------ELLCISKPRSKLPLGFGGKALTW 154
             N    EV                            EL  +                  
Sbjct: 61  APNLYREEVDATRRVERAWGGEGGLMLELAAALPGIEELASLLA---------------- 104

Query: 155 VVEALKSRQEGSPDFILIDC-PAG--IDAGFITAITPANEA--VLVTTPDITSLRDADR- 208
           V        EG  D I+ D  P G  +       +T        LVT P+   L + +R 
Sbjct: 105 VFREFS---EGLYDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPEKLPLYETERA 161

Query: 209 VTGL----LECDGIRDIKMVVNRV 228
           +T L    +  D +     VVNRV
Sbjct: 162 ITELALYGIPVDAV-----VVNRV 180

This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence. Length = 217

>gnl|CDD|183270 PRK11670, PRK11670, antiporter inner membrane protein; Provisional

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 18/38 (47%), Positives = 28/38 (73%)

Query: 52  VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV 89
           ++ ++SGKGGVGK++T  N+ L+LA  G  V  +DAD+
Sbjct: 109 IIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADI 146

Length = 369

>gnl|CDD|139929 PRK13869, PRK13869, plasmid-partitioning protein RepA; Provisional

 Score = 44.3 bits (104), Expect = 5e-05
 Identities = 51/178 (28%), Positives = 77/178 (43%), Gaps = 25/178 (14%)

Query: 47  GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNY 106
            E  +V+ +T+ KGG GKTTT+A++   LA  G+ V+A+D D    +L  LLG+    + 
Sbjct: 118 SEHLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQ-ASLSALLGVLPETDV 176

Query: 107 TVVEVLNGDCRLDQA------LVRDKRWS-------NFELLCISKPRSK-LPLGFGGKAL 152
              E L    R D        ++R   +        N EL+       K L        L
Sbjct: 177 GANETLYAAIRYDDTRRPLRDVIRPTYFDGLHLVPGNLELMEFEHTTPKALSDKGTRDGL 236

Query: 153 --TWVVEALKSRQEGSPDFILIDCPAGIDAGFIT--AITPANEAVLVTTP---DITSL 203
             T V +A     +   D ++IDCP  +  GF+T   +  A   V+   P   DI S+
Sbjct: 237 FFTRVAQAFDEVADDY-DVVVIDCPPQL--GFLTLSGLCAATSMVITVHPQMLDIASM 291

Length = 405

>gnl|CDD|148269 pfam06564, YhjQ, YhjQ protein

 Score = 43.2 bits (102), Expect = 7e-05
 Identities = 42/155 (27%), Positives = 61/155 (39%), Gaps = 28/155 (18%)

Query: 59  KGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCR- 117
           +GGVG T+ TA +G +L +LG SV+ IDA     + D LL L   V++   +   G  R 
Sbjct: 10  RGGVGTTSLTAALGWALQQLGESVLVIDA-----SPDNLLRLHFNVDFDHSD---GWARA 61

Query: 118 -LDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSR------------QE 164
            LD    RD        L +      LP G    A    ++ L+                
Sbjct: 62  ELDGRPWRDAALRYTPGLDL------LPFGQLTGAERENLQQLQPDLGAWAQRLQLLKAS 115

Query: 165 GSPDFILIDCPAGIDAGFITAITPANEAVLVTTPD 199
           G   +IL+D P G        +  A+  + V   D
Sbjct: 116 GQYRWILLDLPQGFSPLTRQLLELADVTLAVVHAD 150

This family consists of several bacterial YhjQ proteins. The function of this family is unknown. However, the family does contain a P-loop sequence motif suggesting a nucleotide binding function. Length = 244

>gnl|CDD|238989 cd02032, Bchl_like, This family of proteins contains bchL and chlL

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 70/288 (24%), Positives = 115/288 (39%), Gaps = 57/288 (19%)

Query: 58  GKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNG-DC 116
           GKGG+GK+TT++N+ ++LA+ G  V+ I  D      D    L   +  TV+++L   D 
Sbjct: 7   GKGGIGKSTTSSNLSVALAKRGKKVLQIGCD---PKHDSTFTLTGFLIPTVIDILEEVDF 63

Query: 117 RLDQALVRDKRWSNF-ELLCISKPRSKLPLGFGGKALTWVV-EALKSRQE----GSPDFI 170
             ++    D  +  +  + C+         G GG    +VV E +K  +E       D I
Sbjct: 64  HYEELWPEDVIYEGYGGVDCVEAGGPPAGAGCGG----YVVGETVKLLKELNLFEEYDVI 119

Query: 171 LID------CPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIR----- 219
           L D      C      GF   +  A+ A++VT  D  S+  A+R+        +R     
Sbjct: 120 LFDVLGDVVC-----GGFAAPLNYADYALIVTDNDFDSIFAANRI-----AAAVREKAKT 169

Query: 220 -DIKM---VVNRVR-TDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPL-- 272
             +++   + NR   TD+I            E +G+ +L V+P   ++ RS  +G  L  
Sbjct: 170 YKVRLAGLIANRTDKTDLID--------KFVEAVGMPVLAVLPLIEDIRRSRVKGKTLFE 221

Query: 273 VLNKPPTLAGLAFE---QAAWRLVEQDSMKAVMVEEEPKRRGFFSFFG 317
           +      LA         A   L   +     +V E    R  F   G
Sbjct: 222 MDESDEELAYRCDYYLLIADQLLAGPEG----VVPEPLGDREIFDLLG 265

Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen. Length = 267

>gnl|CDD|238941 cd01983, Fer4_NifH, The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 21/65 (32%), Positives = 38/65 (58%), Gaps = 6/65 (9%)

Query: 168 DFILIDCPAGIDAG---FITAITPANEAVLVTTPDITSLRDADRVTGL---LECDGIRDI 221
           D++LID P G+       + A+  A+  ++VTTP+  ++  A R+T +   L  +G+R +
Sbjct: 35  DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEALAVLGARRLTEVVLELAIEGLRPV 94

Query: 222 KMVVN 226
            +VVN
Sbjct: 95  GVVVN 99

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion. Length = 99

>gnl|CDD|223082 COG0003, ArsA, Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88
            R+V  T GKGGVGKTT  A   + LA  G  V+ +  D
Sbjct: 1  MTRIVFFT-GKGGVGKTTIAAATAVKLAESGKKVLLVSTD 39

Length = 322

>gnl|CDD|239385 cd03111, CpaE_like, This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

 Score = 38.1 bits (89), Expect = 7e-04
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 52 VVVITSGKGGVGKTTTTANVGLSLARL-GFSVVAIDAD 88
          V+     KGGVG TT  AN+ ++LA+  G  V+ +D D
Sbjct: 1  VIAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLD 38

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome. Length = 106

>gnl|CDD|224267 COG1348, NifH, Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 55/235 (23%), Positives = 97/235 (41%), Gaps = 34/235 (14%)

Query: 58  GKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVL----- 112
           GKGG+GK+TT+ N+  +LA LG  V+ +  D    +  LLLG   +   TV++ L     
Sbjct: 8   GKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKADSTRLLLG--GKAIPTVLDTLREKGE 65

Query: 113 NGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQ--EGSPDFI 170
             D  L+  +          + C+     +  +G  G+ +   +  L+     E   D +
Sbjct: 66  VEDLELEDVIFT----GFGGVKCVESGGPEPGVGCAGRGVITAINLLEELGAFEEDLDVV 121

Query: 171 LIDCPAGID-AGFITAITP--ANEAVLVTTPDITSLRDADRVTGLLECDGIRDIK----- 222
           + D    +   GF   I    A+E  +VT+ ++ +L  A+ +       GIR        
Sbjct: 122 IYDVLGDVVCGGFAMPIREGYADEIYIVTSGEMMALYAANNI-----AKGIRKYAKTGGV 176

Query: 223 ----MVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLV 273
               ++ N    D    E  + V    E LG  L+  +P D+ V ++   G  ++
Sbjct: 177 RLGGIICNSRSVD---REREL-VEAFAERLGTQLIHFVPRDNIVQKAELNGKTVI 227

Length = 278

>gnl|CDD|237293 PRK13185, chlL, protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional

 Score = 39.9 bits (94), Expect = 9e-04
 Identities = 15/31 (48%), Positives = 23/31 (74%)

Query: 58 GKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88
          GKGG+GK+TT++N+  + A+LG  V+ I  D
Sbjct: 9  GKGGIGKSTTSSNLSAAFAKLGKKVLQIGCD 39

Length = 270

>gnl|CDD|217004 pfam02374, ArsA_ATPase, Anion-transporting ATPase

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88
           +   GKGGVGKTT +    + L+  G  V+ +  D
Sbjct: 3  WIFFGGKGGVGKTTVSCATAVRLSEQGKKVLLVSTD 38

This Pfam family represents a conserved domain, which is sometimes repeated, in an anion-transporting ATPase. The ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell. Length = 304

>gnl|CDD|213904 TIGR04291, arsen_driv_ArsA, arsenical pump-driving ATPase

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 15/30 (50%), Positives = 20/30 (66%)

Query: 53  VVITSGKGGVGKTTTTANVGLSLARLGFSV 82
           +++T GKGGVGKTT  A + + LA  G  V
Sbjct: 323 LIMTMGKGGVGKTTVAAAIAVRLANKGLDV 352

The broader family (TIGR00345) to which the current family belongs consists of transport-energizing ATPases, including to TRC40/GET3 family involved in post-translational insertion of protein C-terminal transmembrane anchors into membranes from the cyotosolic face. This family, however, is restricted to ATPases that energize pumps that export arsenite (or antimonite). Length = 566

>gnl|CDD|177011 CHL00072, chlL, photochlorophyllide reductase subunit L

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 16/31 (51%), Positives = 23/31 (74%)

Query: 58 GKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88
          GKGG+GK+TT+ N+ ++LAR G  V+ I  D
Sbjct: 7  GKGGIGKSTTSCNISIALARRGKKVLQIGCD 37

Length = 290

>gnl|CDD|222854 PHA02518, PHA02518, ParA-like protein; Provisional

 Score = 37.9 bits (88), Expect = 0.004
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88
          +++ + + KGG GKTT   N+   L   G  V+ +D D
Sbjct: 1  KIIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLD 38

Length = 211

>gnl|CDD|239034 cd02117, NifH_like, This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase

 Score = 37.6 bits (88), Expect = 0.004
 Identities = 14/31 (45%), Positives = 22/31 (70%)

Query: 58 GKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88
          GKGG+GK+TT+ N+  +LA +G  V+ +  D
Sbjct: 7  GKGGIGKSTTSQNLSAALAEMGKKVLQVGCD 37

Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate. Length = 212

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	340
COG2894	272	MinD Septum formation inhibitor-activating ATPase	100.0
CHL00175	281	minD septum-site determining protein; Validated	100.0
TIGR01969	251	minD_arch cell division ATPase MinD, archaeal. Thi	100.0
TIGR01968	261	minD_bact septum site-determining protein MinD. Th	100.0
PRK10818	270	cell division inhibitor MinD; Provisional	100.0
COG0455	262	flhG Antiactivator of flagellar biosynthesis FleN,	100.0
TIGR03371	246	cellulose_yhjQ cellulose synthase operon protein Y	100.0
PRK13232	273	nifH nitrogenase reductase; Reviewed	100.0
CHL00072	290	chlL photochlorophyllide reductase subunit L	100.0
PRK13233	275	nifH nitrogenase reductase; Reviewed	100.0
TIGR01281	268	DPOR_bchL light-independent protochlorophyllide re	100.0
PRK13235	274	nifH nitrogenase reductase; Reviewed	100.0
PRK13236	296	nitrogenase reductase; Reviewed	100.0
PRK13231	264	nitrogenase reductase-like protein; Reviewed	100.0
TIGR01287	275	nifH nitrogenase iron protein. This model describe	100.0
PRK10037	250	cell division protein; Provisional	100.0
PRK13185	270	chlL protochlorophyllide reductase iron-sulfur ATP	100.0
cd02040	270	NifH NifH gene encodes component II (iron protein)	100.0
PRK11670	369	antiporter inner membrane protein; Provisional	100.0
cd02032	267	Bchl_like This family of proteins contains bchL an	100.0
PRK13230	279	nitrogenase reductase-like protein; Reviewed	100.0
PF06564	243	YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ p	100.0
PRK13234	295	nifH nitrogenase reductase; Reviewed	100.0
KOG3022	300	consensus Predicted ATPase, nucleotide-binding [Ce	100.0
TIGR03815	322	CpaE_hom_Actino helicase/secretion neighborhood Cp	100.0
PRK13869	405	plasmid-partitioning protein RepA; Provisional	99.97
COG1192	259	Soj ATPases involved in chromosome partitioning [C	99.97
TIGR03453	387	partition_RepA plasmid partitioning protein RepA.	99.97
PHA02519	387	plasmid partition protein SopA; Reviewed	99.97
PRK13705	388	plasmid-partitioning protein SopA; Provisional	99.97
cd02036	179	MinD Bacterial cell division requires the formatio	99.97
PHA02518	211	ParA-like protein; Provisional	99.97
cd02117	212	NifH_like This family contains the NifH (iron prot	99.96
TIGR03018	207	pepcterm_TyrKin exopolysaccharide/PEPCTERM locus t	99.96
TIGR03029	274	EpsG chain length determinant protein tyrosine kin	99.96
TIGR02016	296	BchX chlorophyllide reductase iron protein subunit	99.95
TIGR01007	204	eps_fam capsular exopolysaccharide family. This mo	99.95
cd02033	329	BchX Chlorophyllide reductase converts chlorophyll	99.95
COG4963	366	CpaE Flp pilus assembly protein, ATPase CpaE [Intr	99.95
PRK11519	719	tyrosine kinase; Provisional	99.95
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	99.95
PRK09841	726	cryptic autophosphorylating protein tyrosine kinas	99.94
cd02037	169	MRP-like MRP (Multiple Resistance and pH adaptatio	99.94
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	99.94
COG0489	265	Mrp ATPases involved in chromosome partitioning [C	99.94
PF00142	273	Fer4_NifH: 4Fe-4S iron sulfur cluster binding prot	99.94
PRK13849	231	putative crown gall tumor protein VirC1; Provision	99.93
cd03110	179	Fer4_NifH_child This protein family's function is	99.93
COG1149	284	MinD superfamily P-loop ATPase containing an inser	99.93
COG1348	278	NifH Nitrogenase subunit NifH (ATPase) [Inorganic	99.92
PF01656	195	CbiA: CobQ/CobB/MinD/ParA nucleotide binding domai	99.92
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	99.88
cd03111	106	CpaE_like This protein family consists of proteins	99.87
PF13614	157	AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ	99.84
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	99.83
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	99.82
cd00550	254	ArsA_ATPase Oxyanion-translocating ATPase (ArsA).	99.81
PF09140	261	MipZ: ATPase MipZ; InterPro: IPR015223 Cell divisi	99.8
cd02035	217	ArsA ArsA ATPase functionas as an efflux pump loca	99.8
PF02374	305	ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_	99.65
cd03114	148	ArgK-like The function of this protein family is u	99.59
TIGR00064	272	ftsY signal recognition particle-docking protein F	99.47
COG0003	322	ArsA Predicted ATPase involved in chromosome parti	99.46
PRK00090	222	bioD dithiobiotin synthetase; Reviewed	99.46
PRK13886	241	conjugal transfer protein TraL; Provisional	99.44
cd02034	116	CooC The accessory protein CooC, which contains a	99.43
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	99.36
cd03115	173	SRP The signal recognition particle (SRP) mediates	99.36
PRK13768	253	GTPase; Provisional	99.34
PRK12374	231	putative dithiobiotin synthetase; Provisional	99.33
PRK10867	433	signal recognition particle protein; Provisional	99.32
PRK10416	318	signal recognition particle-docking protein FtsY;	99.32
TIGR00959	428	ffh signal recognition particle protein. This mode	99.3
KOG2825	323	consensus Putative arsenite-translocating ATPase [	99.3
COG0132	223	BioD Dethiobiotin synthetase [Coenzyme metabolism]	99.3
TIGR00347	166	bioD dethiobiotin synthase. Dethiobiotin synthase	99.28
PRK00771	437	signal recognition particle protein Srp54; Provisi	99.25
PRK01077	451	cobyrinic acid a,c-diamide synthase; Validated	99.24
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	99.23
TIGR00313	475	cobQ cobyric acid synthase CobQ.	99.18
PF13500	199	AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R	99.17
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	99.15
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	99.12
cd03109	134	DTBS Dethiobiotin synthetase (DTBS) is the penulti	99.11
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.08
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	99.07
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	99.07
COG1797	451	CobB Cobyrinic acid a,c-diamide synthase [Coenzyme	99.04
PRK00784	488	cobyric acid synthase; Provisional	99.04
PRK14493	274	putative bifunctional molybdopterin-guanine dinucl	99.04
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	98.99
PRK05632	684	phosphate acetyltransferase; Reviewed	98.99
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	98.98
PRK09435	332	membrane ATPase/protein kinase; Provisional	98.97
TIGR00379	449	cobB cobyrinic acid a,c-diamide synthase. This mod	98.95
PRK14974	336	cell division protein FtsY; Provisional	98.95
PRK13505	557	formate--tetrahydrofolate ligase; Provisional	98.91
TIGR00345	284	arsA arsenite-activated ATPase (arsA). The N-termi	98.88
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.86
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	98.81
PRK13896	433	cobyrinic acid a,c-diamide synthase; Provisional	98.76
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	98.75
PRK06278	476	cobyrinic acid a,c-diamide synthase; Validated	98.71
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	98.69
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	98.66
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	98.63
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	98.61
KOG0780	483	consensus Signal recognition particle, subunit Srp	98.51
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.45
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	98.43
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.42
PF10609	81	ParA: ParA/MinD ATPase like; InterPro: IPR019591 T	98.34
KOG0781	587	consensus Signal recognition particle receptor, al	98.24
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	98.21
COG1492	486	CobQ Cobyric acid synthase [Coenzyme metabolism]	98.15
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	97.95
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	97.89
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	97.88
COG1341	398	Predicted GTPase or GTP-binding protein [General f	97.81
KOG1533	290	consensus Predicted GTPase [General function predi	97.68
cd00477	524	FTHFS Formyltetrahydrofolate synthetase (FTHFS) ca	97.67
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	97.63
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	97.61
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	97.57
PRK13506	578	formate--tetrahydrofolate ligase; Provisional	97.57
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	97.56
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.54
COG1763	161	MobB Molybdopterin-guanine dinucleotide biosynthes	97.5
PRK14495	452	putative molybdopterin-guanine dinucleotide biosyn	97.46
PRK08233	182	hypothetical protein; Provisional	97.44
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	97.43
PHA02542	473	41 41 helicase; Provisional	97.41
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	97.31
PRK12740	668	elongation factor G; Reviewed	97.3
PRK06067	234	flagellar accessory protein FlaH; Validated	97.29
PRK00089	292	era GTPase Era; Reviewed	97.27
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.24
cd00881	189	GTP_translation_factor GTP translation factor fami	97.21
COG1159	298	Era GTPase [General function prediction only]	97.15
PRK04296	190	thymidine kinase; Provisional	97.11
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	97.11
PRK00741	526	prfC peptide chain release factor 3; Provisional	97.1
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	97.1
COG2403	449	Predicted GTPase [General function prediction only	97.09
PRK14494	229	putative molybdopterin-guanine dinucleotide biosyn	97.07
TIGR00503	527	prfC peptide chain release factor 3. This translat	97.07
PRK00889	175	adenylylsulfate kinase; Provisional	97.05
PRK08533	230	flagellar accessory protein FlaH; Reviewed	97.04
cd03116	159	MobB Molybdenum is an essential trace element in t	97.03
PLN03127	447	Elongation factor Tu; Provisional	97.01
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	97.01
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	96.99
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	96.99
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	96.99
cd00983	325	recA RecA is a bacterial enzyme which has roles in	96.97
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	96.93
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	96.93
cd00561	159	CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B	96.91
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	96.89
cd01394	218	radB RadB. The archaeal protein radB shares simila	96.84
COG1066	456	Sms Predicted ATP-dependent serine protease [Postt	96.82
PRK07667	193	uridine kinase; Provisional	96.82
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	96.8
PF02606	326	LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPr	96.8
PTZ00141	446	elongation factor 1- alpha; Provisional	96.8
COG0857	354	Pta BioD-like N-terminal domain of phosphotransace	96.8
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	96.75
PRK03846	198	adenylylsulfate kinase; Provisional	96.69
PF00154	322	RecA: recA bacterial DNA recombination protein; In	96.68
COG0468	279	RecA RecA/RadA recombinase [DNA replication, recom	96.67
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	96.66
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	96.65
PRK12739	691	elongation factor G; Reviewed	96.63
PRK00093	435	GTP-binding protein Der; Reviewed	96.62
COG2874	235	FlaH Predicted ATPases involved in biogenesis of a	96.62
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	96.62
CHL00071	409	tufA elongation factor Tu	96.59
PRK06696	223	uridine kinase; Validated	96.58
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	96.57
PF07755	301	DUF1611: Protein of unknown function (DUF1611); In	96.56
cd03113	255	CTGs CTP synthetase (CTPs) is a two-domain protein	96.56
PRK15494	339	era GTPase Era; Provisional	96.56
PRK00049	396	elongation factor Tu; Reviewed	96.56
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	96.55
PRK09354	349	recA recombinase A; Provisional	96.55
PRK11823	446	DNA repair protein RadA; Provisional	96.53
PRK00007	693	elongation factor G; Reviewed	96.52
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	96.5
PRK05973	237	replicative DNA helicase; Provisional	96.5
PRK15453	290	phosphoribulokinase; Provisional	96.49
TIGR02237	209	recomb_radB DNA repair and recombination protein R	96.49
KOG1534	273	consensus Putative transcription factor FET5 [Tran	96.48
cd03112	158	CobW_like The function of this protein family is u	96.43
PF13479	213	AAA_24: AAA domain	96.43
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	96.42
PRK07952	244	DNA replication protein DnaC; Validated	96.42
COG1160	444	Predicted GTPases [General function prediction onl	96.41
PLN00043	447	elongation factor 1-alpha; Provisional	96.4
PRK12736	394	elongation factor Tu; Reviewed	96.39
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	96.39
PLN03126	478	Elongation factor Tu; Provisional	96.38
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	96.38
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	96.37
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	96.37
PRK05595	444	replicative DNA helicase; Provisional	96.36
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	96.34
PRK04328	249	hypothetical protein; Provisional	96.33
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	96.27
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	96.24
TIGR00485	394	EF-Tu translation elongation factor TU. This align	96.24
PF13481	193	AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.	96.19
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	96.18
PRK12735	396	elongation factor Tu; Reviewed	96.17
TIGR00682	311	lpxK tetraacyldisaccharide 4'-kinase. Also called	96.14
PRK05986	191	cob(I)alamin adenolsyltransferase/cobinamide ATP-d	96.1
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	96.09
COG0467	260	RAD55 RecA-superfamily ATPases implicated in signa	96.08
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	96.05
KOG2749	415	consensus mRNA cleavage and polyadenylation factor	95.92
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	95.91
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	95.91
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	95.9
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	95.89
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	95.87
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	95.87
PRK10218	607	GTP-binding protein; Provisional	95.86
PRK06762	166	hypothetical protein; Provisional	95.85
PRK00652	325	lpxK tetraacyldisaccharide 4'-kinase; Reviewed	95.83
PRK09302	509	circadian clock protein KaiC; Reviewed	95.82
PRK05480	209	uridine/cytidine kinase; Provisional	95.82
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	95.78
PF03796	259	DnaB_C: DnaB-like helicase C terminal domain; Inte	95.78
cd00984	242	DnaB_C DnaB helicase C terminal domain. The hexame	95.78
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	95.71
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	95.7
TIGR00101	199	ureG urease accessory protein UreG. This model rep	95.7
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	95.69
PRK05433	600	GTP-binding protein LepA; Provisional	95.67
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	95.65
COG3367	339	Uncharacterized conserved protein [Function unknow	95.64
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	95.64
PF13245	76	AAA_19: Part of AAA domain	95.59
PRK09302	509	circadian clock protein KaiC; Reviewed	95.58
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	95.55
KOG0635	207	consensus Adenosine 5'-phosphosulfate kinase [Inor	95.51
PRK05439	311	pantothenate kinase; Provisional	95.5
PRK03003	472	GTP-binding protein Der; Reviewed	95.5
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	95.49
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	95.47
smart00382	148	AAA ATPases associated with a variety of cellular	95.42
PRK04301	317	radA DNA repair and recombination protein RadA; Va	95.41
PRK05541	176	adenylylsulfate kinase; Provisional	95.4
PRK09165	497	replicative DNA helicase; Provisional	95.36
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	95.35
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	95.33
COG1484	254	DnaC DNA replication protein [DNA replication, rec	95.33
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	95.31
TIGR02238	313	recomb_DMC1 meiotic recombinase Dmc1. This model d	95.3
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	95.28
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	95.23
TIGR03600	421	phage_DnaB phage replicative helicase, DnaB family	95.22
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	95.21
COG0050	394	TufB GTPases - translation elongation factors [Tra	95.18
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	95.11
PRK07261	171	topology modulation protein; Provisional	95.11
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	95.1
PRK14491	597	putative bifunctional molybdopterin-guanine dinucl	95.09
PRK09519	790	recA DNA recombination protein RecA; Reviewed	95.07
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	95.07
TIGR00708	173	cobA cob(I)alamin adenosyltransferase. Alternate n	95.05
PRK14489	366	putative bifunctional molybdopterin-guanine dinucl	95.01
PRK12297	424	obgE GTPase CgtA; Reviewed	95.0
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	94.97
PLN03187	344	meiotic recombination protein DMC1 homolog; Provis	94.95
PHA00729	226	NTP-binding motif containing protein	94.9
PRK06526	254	transposase; Provisional	94.86
PRK08506	472	replicative DNA helicase; Provisional	94.8
COG0523	323	Putative GTPases (G3E family) [General function pr	94.8
PRK12299	335	obgE GTPase CgtA; Reviewed	94.75
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	94.68
PRK09183	259	transposase/IS protein; Provisional	94.65
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	94.56
PRK06749	428	replicative DNA helicase; Provisional	94.53
PRK08760	476	replicative DNA helicase; Provisional	94.53
PRK07414	178	cob(I)yrinic acid a,c-diamide adenosyltransferase;	94.52
PRK12377	248	putative replication protein; Provisional	94.52
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	94.5
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	94.49
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	94.45
PRK01906	338	tetraacyldisaccharide 4'-kinase; Provisional	94.44
PTZ00035	337	Rad51 protein; Provisional	94.43
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	94.39
PRK12298	390	obgE GTPase CgtA; Reviewed	94.35
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	94.34
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	94.31
PRK08903	227	DnaA regulatory inactivator Hda; Validated	94.3
PRK06217	183	hypothetical protein; Validated	94.28
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	94.27
PLN02924	220	thymidylate kinase	94.26
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	94.22
PRK08006	471	replicative DNA helicase; Provisional	94.2
PRK11537	318	putative GTP-binding protein YjiA; Provisional	94.2
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	94.17
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	94.15
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	94.13
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	94.13
TIGR00235	207	udk uridine kinase. Model contains a number of lon	94.11
TIGR00665	434	DnaB replicative DNA helicase. This model describe	94.1
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	94.08
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	93.99
PF01935	229	DUF87: Domain of unknown function DUF87; InterPro:	93.97
PLN03186	342	DNA repair protein RAD51 homolog; Provisional	93.95
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	93.94
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	93.89
PRK08840	464	replicative DNA helicase; Provisional	93.88
PRK05642	234	DNA replication initiation factor; Validated	93.82
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	93.82
PRK05748	448	replicative DNA helicase; Provisional	93.78
PRK06835	329	DNA replication protein DnaC; Validated	93.77
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	93.77
PRK06904	472	replicative DNA helicase; Validated	93.75
PRK08727	233	hypothetical protein; Validated	93.74
PRK08939	306	primosomal protein DnaI; Reviewed	93.74
KOG1805	1100	consensus DNA replication helicase [Replication, r	93.71
COG3598	402	RepA RecA-family ATPase [DNA replication, recombin	93.71
PF13173	128	AAA_14: AAA domain	93.7
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	93.68
PLN03046	460	D-glycerate 3-kinase; Provisional	93.67
PRK09866	741	hypothetical protein; Provisional	93.62
COG4240	300	Predicted kinase [General function prediction only	93.57
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	93.53
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	93.51
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	93.51
PRK06321	472	replicative DNA helicase; Provisional	93.44
PRK08118	167	topology modulation protein; Reviewed	93.43
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	93.42
PF01268	557	FTHFS: Formate--tetrahydrofolate ligase; InterPro:	93.42
PRK06893	229	DNA replication initiation factor; Validated	93.34
PRK08116	268	hypothetical protein; Validated	93.25
PRK13949	169	shikimate kinase; Provisional	93.24
PRK00131	175	aroK shikimate kinase; Reviewed	93.23
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	93.22
PRK08181	269	transposase; Validated	93.18
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	93.11
PRK12296	500	obgE GTPase CgtA; Reviewed	93.11
PTZ00301	210	uridine kinase; Provisional	93.09
PLN02796	347	D-glycerate 3-kinase	93.06
PF02572	172	CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase	93.03
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	92.96
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	92.95
PRK07933	213	thymidylate kinase; Validated	92.94
PRK05636	505	replicative DNA helicase; Provisional	92.88
PF12846	304	AAA_10: AAA-like domain	92.85
PRK06547	172	hypothetical protein; Provisional	92.84
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	92.81
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	92.8
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	92.74
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	92.73
PF05729	166	NACHT: NACHT domain	92.69
PRK07004	460	replicative DNA helicase; Provisional	92.65
KOG3220	225	consensus Similar to bacterial dephospho-CoA kinas	92.61
COG2109	198	BtuR ATP:corrinoid adenosyltransferase [Coenzyme m	92.55
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	92.52
PRK06921	266	hypothetical protein; Provisional	92.51
PRK13507	587	formate--tetrahydrofolate ligase; Provisional	92.48
TIGR02239	316	recomb_RAD51 DNA repair protein RAD51. This eukary	92.48
PRK08084	235	DNA replication initiation factor; Provisional	92.41
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	92.25
PRK00698	205	tmk thymidylate kinase; Validated	92.21
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	92.2
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	92.2
PLN02348	395	phosphoribulokinase	92.17
PF09848	352	DUF2075: Uncharacterized conserved protein (DUF207	92.15
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	92.15
PLN02759	637	Formate--tetrahydrofolate ligase	92.07
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	92.04
TIGR02236	310	recomb_radA DNA repair and recombination protein R	91.97
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	91.94
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	91.94
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	91.93
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	91.91
PRK04040	188	adenylate kinase; Provisional	91.87
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	91.86
PRK06851	367	hypothetical protein; Provisional	91.83
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	91.81
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	91.74
PRK13351	687	elongation factor G; Reviewed	91.66
PRK06761	282	hypothetical protein; Provisional	91.65
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	91.63
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	91.62
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	91.61
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	91.6
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	91.6
PF08423	256	Rad51: Rad51; InterPro: IPR013632 This domain is f	91.59
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	91.58
PRK03731	171	aroL shikimate kinase II; Reviewed	91.48
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	91.45
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	91.41
PRK13946	184	shikimate kinase; Provisional	91.37
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	91.34
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	91.32
PF00004	132	AAA: ATPase family associated with various cellula	91.26
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	91.23
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	91.16
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	91.13
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	91.11
COG2074	299	2-phosphoglycerate kinase [Carbohydrate transport	91.11
COG2759	554	MIS1 Formyltetrahydrofolate synthetase [Nucleotide	91.02
COG0305	435	DnaB Replicative DNA helicase [DNA replication, re	90.95
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	90.91
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	90.81
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	90.8
PRK09112	351	DNA polymerase III subunit delta'; Validated	90.75
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	90.71
KOG3062	281	consensus RNA polymerase II elongator associated p	90.69
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	90.65
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	90.63
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	90.56
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	90.55
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	90.41
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	90.36
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	90.33
PHA02530	300	pseT polynucleotide kinase; Provisional	90.29
TIGR03172	232	probable selenium-dependent hydroxylase accessory	90.28
PRK13947	171	shikimate kinase; Provisional	90.25
PTZ00386	625	formyl tetrahydrofolate synthetase; Provisional	90.23
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	90.22
PRK13973	213	thymidylate kinase; Provisional	90.21
PRK12339	197	2-phosphoglycerate kinase; Provisional	90.15
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	90.08
PRK12317	425	elongation factor 1-alpha; Reviewed	90.04
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	90.01
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	89.79
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	89.72
PRK06851	367	hypothetical protein; Provisional	89.71
PTZ00451	244	dephospho-CoA kinase; Provisional	89.71
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	89.7
PRK14734	200	coaE dephospho-CoA kinase; Provisional	89.68
PRK14527	191	adenylate kinase; Provisional	89.68
PRK04220	301	2-phosphoglycerate kinase; Provisional	89.64
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	89.55
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	89.49
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	89.34
PRK05707	328	DNA polymerase III subunit delta'; Validated	89.32
PLN02422	232	dephospho-CoA kinase	89.23
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	89.16
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	89.1
COG1100	219	GTPase SAR1 and related small G proteins [General	89.08
PRK10536	262	hypothetical protein; Provisional	89.06
PRK07773	886	replicative DNA helicase; Validated	89.02
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	89.02
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	89.01
PRK14730	195	coaE dephospho-CoA kinase; Provisional	89.01
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	89.0
PRK08769	319	DNA polymerase III subunit delta'; Validated	88.99
PRK12338	319	hypothetical protein; Provisional	88.98
PRK13975	196	thymidylate kinase; Provisional	88.89
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	88.83
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	88.8
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	88.75
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	88.74
PF02223	186	Thymidylate_kin: Thymidylate kinase; InterPro: IPR	88.74
PF06418	276	CTP_synth_N: CTP synthase N-terminus; InterPro: IP	88.71
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	88.61
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	88.6
PRK07429	327	phosphoribulokinase; Provisional	88.58
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	88.55
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	88.53
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	88.52
PRK01184	184	hypothetical protein; Provisional	88.5
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	88.36
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	88.27
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	87.99
PRK13695	174	putative NTPase; Provisional	87.92
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	87.92
PRK03839	180	putative kinase; Provisional	87.87
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	87.81
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	87.77
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	87.77
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	87.75
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	87.72
PRK13948	182	shikimate kinase; Provisional	87.71
COG1855	604	ATPase (PilT family) [General function prediction	87.67
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	87.64
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	87.51
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	87.51
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	87.46
PRK14731	208	coaE dephospho-CoA kinase; Provisional	87.39
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	87.3
COG1663	336	LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell env	87.3
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	87.26
PRK12422	445	chromosomal replication initiation protein; Provis	87.25
PLN03210	1153	Resistant to P. syringae 6; Provisional	87.22
PRK07560	731	elongation factor EF-2; Reviewed	87.2
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	87.17
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	87.12
PRK14733	204	coaE dephospho-CoA kinase; Provisional	87.07
PRK14530	215	adenylate kinase; Provisional	87.02
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	86.95
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	86.93

>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]

Probab=100.00  E-value=1.2e-42  Score=288.52  Aligned_cols=263  Identities=46%  Similarity=0.761  Sum_probs=239.4

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccccc
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRW  128 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  128 (340)
                      |+++|.|+|+||||||||+++||+..||++|++|++||+|..-.++...+|++....+++.+++.+.+++.+.+.+++..
T Consensus         1 M~~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~DiGLRNLDlimGlE~RiVYd~vdVi~g~~~l~QALIkDKr~   80 (272)
T COG2894           1 MARIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNLDLIMGLENRIVYDLVDVIEGEATLNQALIKDKRL   80 (272)
T ss_pred             CceEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCcCchhhhhhhcccceeeeeehhhhcCccchhhHhhccccC
Confidence            67899999999999999999999999999999999999999889999999999998999999999999999999999999


Q ss_pred             CceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHHHH
Q 047623          129 SNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADR  208 (340)
Q Consensus       129 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~  208 (340)
                      ++++++|++.....-  .+..+.+..+++.|++   .+|||||+|+|.+.......++..||..++|++|+..|++.+.|
T Consensus        81 ~nL~lLPAsQtrdKd--alt~E~v~~vv~eL~~---~~fDyIi~DsPAGIE~G~~~A~~~Ad~AiVVtnPEvSsVRDsDR  155 (272)
T COG2894          81 ENLFLLPASQTRDKD--ALTPEGVKKVVNELKA---MDFDYIIIDSPAGIEQGFKNAVYFADEAIVVTNPEVSSVRDSDR  155 (272)
T ss_pred             CceEecccccccCcc--cCCHHHHHHHHHHHHh---cCCCEEEecCcchHHHHHHhhhhccceEEEEcCCCccccccchh
Confidence            999999998876443  3678889999999996   38999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcC----CC---ceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCCCHH
Q 047623          209 VTGLLECDG----IR---DIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLA  281 (340)
Q Consensus       209 ~~~~l~~~~----~~---~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~s~~  281 (340)
                      ++-.++..+    ..   ..++++||+++......++.+.+++.+.+..++++.||+|..+..+.+.|.|+.... ++.+
T Consensus       156 iiGlLesk~~rae~~~~~~~~llvnR~~p~~v~~GeMlsv~Dv~~iL~i~liGiiPed~~Vi~asN~GePv~l~~-~~~a  234 (272)
T COG2894         156 IIGLLESKSRRAEIGEEPKEHLLLNRYRPEMVKRGEMLSVEDVLEILSIPLIGVIPEDQDVLRASNKGEPVILDD-NSDA  234 (272)
T ss_pred             heeehhcccchhhcCCcccceEEEEccCHHHhccCCcccHHHHHHHhCCceEEeecCchhhheecCCCCCeEeCC-CchH
Confidence            999998654    22   488999999999888889999999999999999999999999999999999998765 5689


Q ss_pred             HHHHHHHHHHHHhccccchhhhccCccccchhhhhccce
Q 047623          282 GLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFSFFGLGV  320 (340)
Q Consensus       282 ~~~~~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (340)
                      +++|.+++++|.++.-+   .......+++||++++++.
T Consensus       235 ~~Ay~d~arRllGe~vp---~~~~~~~kkg~~~~l~~~~  270 (272)
T COG2894         235 GKAYRDIARRLLGEEVP---FRFLEEEKKGFLARLKGGF  270 (272)
T ss_pred             HHHHHHHHHHHhCCCcc---cccchhhhhhHHHHHhhhh
Confidence            99999999999999743   2345568999999998754

>CHL00175 minD septum-site determining protein; Validated

Probab=100.00  E-value=1.5e-38  Score=288.67  Aligned_cols=266  Identities=61%  Similarity=0.963  Sum_probs=219.5

Q ss_pred             CCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecc
Q 047623           46 AGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRD  125 (340)
Q Consensus        46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  125 (340)
                      .++++++|+|+|+||||||||+|+|||++|++.|++|++||+|++.+++..+||.++....++.+++.+...+++.+...
T Consensus        11 ~~~~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~~~~~l~~~lg~~~~~~~~~~d~l~~~~~l~~~~~~~   90 (281)
T CHL00175         11 SATMSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIGLRNLDLLLGLENRVLYTAMDVLEGECRLDQALIRD   90 (281)
T ss_pred             cCCCceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCCCCChhhhcCCCCCCCCCHHHHHcCCCChhhheeec
Confidence            35678999999999999999999999999999999999999999989999999988655578889999888888877766


Q ss_pred             cccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHH
Q 047623          126 KRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRD  205 (340)
Q Consensus       126 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~  205 (340)
                      +.+++++++|++......  ......+..+++.+.+   .+||||||||||+++.....++..||.+++|++++..++..
T Consensus        91 ~~~~~l~~l~~~~~~~~~--~~~~~~l~~~l~~l~~---~~yD~VIiDtpp~~~~~~~~~l~~aD~viiV~~p~~~si~~  165 (281)
T CHL00175         91 KRWKNLSLLAISKNRQRY--NVTRKNMNMLVDSLKN---RGYDYILIDCPAGIDVGFINAIAPAQEAIVVTTPEITAIRD  165 (281)
T ss_pred             CCCCCeEEEeCCCchhhc--cCCHHHHHHHHHHHHh---CCCCEEEEeCCCCCCHHHHHHHHhcCeeEEEcCCChHHHHH
Confidence            567899999987654221  2334445566666543   16999999999999988889999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCCCHHHHHH
Q 047623          206 ADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAF  285 (340)
Q Consensus       206 ~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~s~~~~~~  285 (340)
                      +.++++.+++.+...+++|+|++.++..........+++++.++.++++.||++..+.++...|+|+....|+++++++|
T Consensus       166 ~~~~~~~l~~~~~~~~~lvvN~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Ip~d~~v~~a~~~g~~~~~~~~~~~~~~~~  245 (281)
T CHL00175        166 ADRVAGLLEANGIYNVKLLVNRVRPDMIQANDMMSVRDVQEMLGIPLLGAIPEDENVIISTNRGEPLVLNKKLTLSGIAF  245 (281)
T ss_pred             HHHHHHHHHHcCCCceEEEEeccChhhhhhhccccHHHHHHHhCCCeEEEccCCHhHHHHHHcCCceEeCCCCCHHHHHH
Confidence            99999999987777889999999875432222234667889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccccchhhhccCccccchhhhhccc
Q 047623          286 EQAAWRLVEQDSMKAVMVEEEPKRRGFFSFFGLG  319 (340)
Q Consensus       286 ~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (340)
                      ++||++|.++....   .......++||+++.++
T Consensus       246 ~~la~~l~~~~~~~---~~~~~~~~~~~~~~~~~  276 (281)
T CHL00175        246 ENAARRLVGKQDYF---IDLDSPSKGPLKRLQKF  276 (281)
T ss_pred             HHHHHHHhccccCc---cccccccccHHHHHHHH
Confidence            99999999975321   00112455688887765

>TIGR01969 minD_arch cell division ATPase MinD, archaeal

Probab=100.00  E-value=7.6e-38  Score=279.47  Aligned_cols=251  Identities=35%  Similarity=0.556  Sum_probs=207.3

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCc
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSN  130 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  130 (340)
                      ++|+|.|+||||||||+|+|||..|+++|++|++||+|++.++++.++|.++. ..++.+++.+...+++.+....  .+
T Consensus         1 ~ii~v~~~KGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~   77 (251)
T TIGR01969         1 RIITIASGKGGTGKTTITANLGVALAKLGKKVLALDADITMANLELILGMEDK-PVTLHDVLAGEADIKDAIYEGP--FG   77 (251)
T ss_pred             CEEEEEcCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCccceeEeCCCCC-CCCHHHHhcCCCCHHHheEeCC--CC
Confidence            48999999999999999999999999999999999999987899999998754 3578888888777777666543  78


Q ss_pred             eeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHHHHHH
Q 047623          131 FELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVT  210 (340)
Q Consensus       131 l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~  210 (340)
                      ++++|++....... ......+...++.+.+    +|||||||+||+++..+..++..||.+++|+.++..++..+.++.
T Consensus        78 l~~lp~~~~~~~~~-~~~~~~l~~~l~~l~~----~yD~VIiD~p~~~~~~~~~~l~~ad~vliv~~~~~~s~~~~~~~~  152 (251)
T TIGR01969        78 VKVIPAGVSLEGLR-KADPDKLEDVLKEIID----DTDFLLIDAPAGLERDAVTALAAADELLLVVNPEISSITDALKTK  152 (251)
T ss_pred             EEEEeCCCCHHHHh-hcCHHHHHHHHHHHHh----hCCEEEEeCCCccCHHHHHHHHhCCeEEEEECCCCchHHHHHHHH
Confidence            99998775432221 1233445555555544    799999999999999999999999999999999999999988888


Q ss_pred             HHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCCCHHHHHHHHHHH
Q 047623          211 GLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAW  290 (340)
Q Consensus       211 ~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~s~~~~~~~~la~  290 (340)
                      +.+...+....++|+|++++..    .....+.+++.++.++++.||+++.+.++...|+|+.++.|+++++++|.+|++
T Consensus       153 ~~~~~~~~~~~~vv~N~~~~~~----~~~~~~~l~~~~~~~~l~~Ip~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~la~  228 (251)
T TIGR01969       153 IVAEKLGTAILGVVLNRVTRDK----TELGREEIETILEVPVLGVVPEDPEVRRAAAFGEPVVIYNPNSPAAQAFMELAA  228 (251)
T ss_pred             HHHHhcCCceEEEEEECCCchh----hhhHHHHHHHhhCCcEEEEecCCHhHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Confidence            8777777778899999998742    112245677778999999999999999999999999999999999999999999


Q ss_pred             HHHhccccchhhhccCccccchhhhhcc
Q 047623          291 RLVEQDSMKAVMVEEEPKRRGFFSFFGL  318 (340)
Q Consensus       291 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (340)
                      +|.++....     ..+.|++|+++|++
T Consensus       229 ~i~~~~~~~-----~~~~~~~~~~~~~~  251 (251)
T TIGR01969       229 ELAGIEYEP-----KEPKKEGFIAKVIR  251 (251)
T ss_pred             HHHhccccc-----ccchhhhHHHHhhC
Confidence            999987432     46678899988864

This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.

>TIGR01968 minD_bact septum site-determining protein MinD

Probab=100.00  E-value=2.6e-37  Score=277.52  Aligned_cols=260  Identities=53%  Similarity=0.860  Sum_probs=213.5

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWS  129 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  129 (340)
                      +++|+|+|+|||+||||+|+|||..|+++|++|++||+|++.++++.++|.+.....++.+++.+...+++.+......+
T Consensus         1 ~~ii~v~s~kGGvGKTt~a~~lA~~la~~g~~vlliD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~   80 (261)
T TIGR01968         1 ARVIVITSGKGGVGKTTTTANLGTALARLGKKVVLIDADIGLRNLDLLLGLENRIVYTLVDVVEGECRLQQALIKDKRLK   80 (261)
T ss_pred             CeEEEEecCCCCccHHHHHHHHHHHHHHcCCeEEEEECCCCCCCeeEEeCCCCcCCCCHHHHhcCcCcHHHHhhcCCCCC
Confidence            47999999999999999999999999999999999999998899999999876555788898888777777665544457


Q ss_pred             ceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHHHHH
Q 047623          130 NFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRV  209 (340)
Q Consensus       130 ~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~  209 (340)
                      +++++|++.....  .......+..+++.+.+    .|||||||+||+.+..+..++..||.+++|+.++..++.++.++
T Consensus        81 ~l~~l~~~~~~~~--~~~~~~~l~~~l~~l~~----~~D~viiD~p~~~~~~~~~~l~~aD~viiv~~~~~~s~~~~~~~  154 (261)
T TIGR01968        81 NLYLLPASQTRDK--DAVTPEQMKKLVNELKE----EFDYVIIDCPAGIESGFRNAVAPADEAIVVTTPEVSAVRDADRV  154 (261)
T ss_pred             CeEEEeCCCchhh--hhCCHHHHHHHHHHHHH----hCCEEEEeCCCCcCHHHHHHHHhCCeEEEEcCCCcHHHHHHHHH
Confidence            9999988764322  22334456667777665    79999999999998888899999999999999999999999999


Q ss_pred             HHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCCCHHHHHHHHHH
Q 047623          210 TGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAA  289 (340)
Q Consensus       210 ~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~s~~~~~~~~la  289 (340)
                      ++.++..+....++++|++.+............++++.++.++++.||++..+.++..+|+|+....+ ++++++|.+|+
T Consensus       155 ~~~l~~~~~~~~~iviN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ip~~~~~~~a~~~g~~v~~~~~-s~~~~~~~~La  233 (261)
T TIGR01968       155 IGLLEAKGIEKIHLIVNRLRPEMVKKGDMLSVDDVLEILSIPLIGVIPEDEAIIVSTNKGEPVVLNDK-SRAGKAFENIA  233 (261)
T ss_pred             HHHHHHcCCCceEEEEeCcCchhcccccccCHHHHHHHhCCceeEEccCCHHHHHHHhcCCCeecCCC-ChHHHHHHHHH
Confidence            99998877667899999998754322232346678888999999999999999999999999997654 89999999999


Q ss_pred             HHHHhccccchhhhccCccccchhhhhccc
Q 047623          290 WRLVEQDSMKAVMVEEEPKRRGFFSFFGLG  319 (340)
Q Consensus       290 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (340)
                      ++|+++....   ......+++||.+++.+
T Consensus       234 ~~l~~~~~~~---~~~~~~~~~~~~~~~~~  260 (261)
T TIGR01968       234 RRILGEEVPF---EDLTTQKKGFFARIKRF  260 (261)
T ss_pred             HHHhcCCCCc---cccccccccHHHHHhcc
Confidence            9999866332   11224677898887764

This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.

>PRK10818 cell division inhibitor MinD; Provisional

Probab=100.00  E-value=3.5e-35  Score=265.09  Aligned_cols=242  Identities=40%  Similarity=0.664  Sum_probs=196.4

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccccc
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRW  128 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  128 (340)
                      |+++|+|.|+||||||||+|+|||.+|+++|++|++||+|++.+++..++|.+.....++.+.+.+...+.+.+.+....
T Consensus         1 m~kviav~s~KGGvGKTt~a~nlA~~la~~g~~vllvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (270)
T PRK10818          1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRT   80 (270)
T ss_pred             CceEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCCCCChhhhhCCCcccccCHHHHhcCCCcHHHhccccCCc
Confidence            57999999999999999999999999999999999999999888999999987655567778777777777766654445


Q ss_pred             CceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHHHH
Q 047623          129 SNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADR  208 (340)
Q Consensus       129 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~  208 (340)
                      ++++++|++.....  ..........+++.+++   ..|||||||+||+.+.....++..||.+++|++|+..++..+.+
T Consensus        81 ~~~~~lp~~~~~~~--~~~~~~~~~~~l~~l~~---~~yd~viiD~p~~~~~~~~~~l~~ad~vivv~~p~~~sl~~~~~  155 (270)
T PRK10818         81 ENLYILPASQTRDK--DALTREGVAKVLDDLKA---MDFEFIVCDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDR  155 (270)
T ss_pred             CCEEEecCCCCcch--hhhCHHHHHHHHHHHhh---cCCCEEEEeCCCCccHHHHHHHHhCCeEEEEcCCCchHHHhHHH
Confidence            89999998754321  11233344556665543   26999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhc-----C--CC-ceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCCCH
Q 047623          209 VTGLLECD-----G--IR-DIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTL  280 (340)
Q Consensus       209 ~~~~l~~~-----~--~~-~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~s~  280 (340)
                      +++.+...     +  .+ ..++|+|++++............++.+.+|.++++.||++..+.++...|+|+. ..++++
T Consensus       156 ~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~v~~a~~~G~~v~-~~~~~~  234 (270)
T PRK10818        156 ILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVI-LDIEAD  234 (270)
T ss_pred             HHHHHHHhhccccccccccceEEEEeccCHhhhhhcccccHHHHHHHhCCcEEEEecCCHHHHHHHHcCCeeE-eCCCCH
Confidence            99998632     1  11 357999999875422222223567888899999999999999999999999998 578889


Q ss_pred             HHHHHHHHHHHHHhcc
Q 047623          281 AGLAFEQAAWRLVEQD  296 (340)
Q Consensus       281 ~~~~~~~la~~i~~~~  296 (340)
                      .+++|++|+++|+++.
T Consensus       235 ~~~~~~~la~~l~~~~  250 (270)
T PRK10818        235 AGKAYADTVDRLLGEE  250 (270)
T ss_pred             HHHHHHHHHHHHhCCC
Confidence            9999999999998764

>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]

Probab=100.00  E-value=1.4e-33  Score=249.60  Aligned_cols=241  Identities=34%  Similarity=0.467  Sum_probs=204.2

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHH-HHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccc
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLS-LARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKR  127 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~-la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  127 (340)
                      ++++|+|.|+|||+||||+++||+.. ++.+|++|+++|+|+..++++..||..+.+ .++.+++.+..++++...+...
T Consensus         1 ~~~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~~iDaD~g~~nL~~~~g~~~~~-~~l~dvL~~~~~~~Di~~~~~~   79 (262)
T COG0455           1 MTKVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVESKP-TTLHDVLAGEASIEDIIYETPQ   79 (262)
T ss_pred             CCEEEEEEecCCCccHHHHHHhHHHHHHhhCCCeEEEEecCCCCCcHHHHhCCCCCc-ccHHHHHhCCCCHhHeeeecCc
Confidence            56899999999999999999999555 555688889999999999999999999863 4499999999999988887654


Q ss_pred             cCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHHH
Q 047623          128 WSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDAD  207 (340)
Q Consensus       128 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~  207 (340)
                       .+++++|++...... .....+.+..+++.+.+    .||||++|||++++..+...+..+|.+++|++|+..++.++.
T Consensus        80 -~gl~vipg~~~~~~~-~~~~~~~~~~~~~~l~~----~~D~iliD~~aGl~~~~~~~~~~sd~~viVt~pe~~si~~A~  153 (262)
T COG0455          80 -DGLYVLPGGSGLEDL-AKLDPEDLEDVIKELEE----LYDYILIDTGAGLSRDTLSFILSSDELVIVTTPEPTSITDAY  153 (262)
T ss_pred             -CCEEEeeCCCChHHH-hhcCHHHHHHHHHHHHh----cCCEEEEeCCCCccHHHHHHHHhcCcEEEEeCCCcchHHHHH
Confidence             899999999887665 44677888888888888    689999999999999998888888999999999999999999


Q ss_pred             HHHHHHHhcCCCceE--EEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCCCHHHHHH
Q 047623          208 RVTGLLECDGIRDIK--MVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAF  285 (340)
Q Consensus       208 ~~~~~l~~~~~~~~~--vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~s~~~~~~  285 (340)
                      .+++.++..+....+  +|+|++.+............+..  ...+.+..+|+++.+.++...|.|+..++|++++++++
T Consensus       154 ~~i~~~~~~~~~~~~~~vV~N~v~~~~e~~~~~~~~~~~~--~~~~~~~~i~~~~~v~~a~~~g~p~~~~~p~s~as~ai  231 (262)
T COG0455         154 KTIKILSKLGLDLLGRRVVLNRVRSTKEGVDVAALLIQVV--KQVPVLQVIPFDPEVRRALAEGKPIVLYSPNSKASQAI  231 (262)
T ss_pred             HHHHHHHHcCCccccceEEEEecccccchhHHHHHHHHHH--HhCCceeEeccChHHHHHhhcCCcEEEeCCCCHHHHHH
Confidence            999999998887776  99999984432222222222222  33447789999999999999999999999999999999


Q ss_pred             HHHHHHHHhcccc
Q 047623          286 EQAAWRLVEQDSM  298 (340)
Q Consensus       286 ~~la~~i~~~~~~  298 (340)
                      .+||..+.+....
T Consensus       232 ~~lA~~l~~~~~~  244 (262)
T COG0455         232 KELAAKLAGLPEP  244 (262)
T ss_pred             HHHHHHHhccccc
Confidence            9999999998754

>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ

Probab=100.00  E-value=5.1e-34  Score=254.04  Aligned_cols=239  Identities=25%  Similarity=0.274  Sum_probs=182.9

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWS  129 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  129 (340)
                      |++|+|+|+|||+||||+|+|||..|+++|+||++||+|+| ++++.++|.+.....++.+++.+...+.+.+.+.  .+
T Consensus         1 m~iI~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q-~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~   77 (246)
T TIGR03371         1 MKVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQ-NLLRLHFGMDWSVRDGWARALLNGEPWAAAAYRS--SD   77 (246)
T ss_pred             CcEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCc-chHHHHhCCCCccCCcHHHHHhcCCChHHhHhhc--CC
Confidence            57999999999999999999999999999999999999999 6788889887665567888887766555544433  37


Q ss_pred             ceeEeecCCCCCCCCCCc---chhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHH
Q 047623          130 NFELLCISKPRSKLPLGF---GGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDA  206 (340)
Q Consensus       130 ~l~~l~~~~~~~~~~~~~---~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~  206 (340)
                      +++++|++..........   ....+..+++.+.   ...||+||||+||+.+.....++..||.+++|+.++..++..+
T Consensus        78 ~l~~ip~~~~~~~~~~~~~~~~~~~l~~~l~~l~---~~~~D~viiD~pp~~~~~~~~~l~~ad~vii~~~~~~~s~~~~  154 (246)
T TIGR03371        78 GVLFLPFGDLSADEREAYQAHDAGWLARLLQQLD---LAARDWVLIDVPRGPSPITRQALAAADLVLVVVNADAACYATL  154 (246)
T ss_pred             CeEEecCCCCcHHHHHHHhhcCHHHHHHHHHhcc---cCCCCEEEEECCCCchHHHHHHHHhCCeEEEEeCCCHHHHHHH
Confidence            899998754321111000   1112223333332   2246999999999999999999999999999999999999999


Q ss_pred             H-HHHHHHHhcCC-CceEEEEecccCCcccccccccHHHHHHHhCCce-eEEecCChHHHHHHhcCCceEeeCCCCHHHH
Q 047623          207 D-RVTGLLECDGI-RDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLAL-LGVIPEDSEVIRSTNRGYPLVLNKPPTLAGL  283 (340)
Q Consensus       207 ~-~~~~~l~~~~~-~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v-~~~Ip~d~~~~~a~~~g~~v~~~~~~s~~~~  283 (340)
                      . .+.+.++..+. ..+++|+|+++++......  -.+.+++.++.++ .+.||++..+.++...|+|+.++.|+++.++
T Consensus       155 ~~~~~~l~~~~~~~~~~~iv~n~~~~~~~~~~~--~~~~~~~~~~~~~~~~~I~~~~~~~~a~~~g~pv~~~~~~s~~~~  232 (246)
T TIGR03371       155 HQQALALFAGSGPRIGPHFLINQFDPARQLSRD--VRAVLRQTLGSRLLPFVIHRDEAVSEALARGTPVLNYAPHSQAAH  232 (246)
T ss_pred             HHHHHHHhhcccccccceEEeeccCcchhhHHH--HHHHHHHHhcccccCCcccchhhHHHHHHcCCCccccCCcCHHHH
Confidence            8 45455553322 3578999999876432222  2345667778774 4789999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcc
Q 047623          284 AFEQAAWRLVEQD  296 (340)
Q Consensus       284 ~~~~la~~i~~~~  296 (340)
                      +|++++++|+++.
T Consensus       233 ~~~~la~~~l~~~  245 (246)
T TIGR03371       233 DIRTLAGWLLSKL  245 (246)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998764

Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.

>PRK13232 nifH nitrogenase reductase; Reviewed

Probab=100.00  E-value=4.9e-33  Score=251.33  Aligned_cols=255  Identities=20%  Similarity=0.247  Sum_probs=185.3

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCC----Cccccceecc
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGD----CRLDQALVRD  125 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~----~~~~~~~~~~  125 (340)
                      ||+|+|. +||||||||+|+|||..||++|+||++||+|+|.++...++|...  ..++.+++.+.    .++++.+...
T Consensus         1 ~~~iav~-gKGGVGKTT~a~nLA~~La~~G~rVllvD~Dpq~~~~~~l~g~~~--~~~~~d~l~~~~~~~~~~~~~i~~~   77 (273)
T PRK13232          1 MRQIAIY-GKGGIGKSTTTQNLTAALSTMGNKILLVGCDPKADSTRMLLGGLN--QKTVLDTLRSEGDEGVDLDVVMQPG   77 (273)
T ss_pred             CCEEEEE-CCCCCcHHHHHHHHHHHHHhhCCCeEEEecccccccchhhcCCCC--CCcHHHHHHhcCCCCCCHHHEEEeC
Confidence            4899999 899999999999999999999999999999999666666666543  25788888653    3344444332


Q ss_pred             cccCceeEeecCCCCCCCCCCcchhhH-HHHHHHHHHhccCCCCEEEEcCCCCCC-H-H-HHHHHhcCCeEEEEeCCChh
Q 047623          126 KRWSNFELLCISKPRSKLPLGFGGKAL-TWVVEALKSRQEGSPDFILIDCPAGID-A-G-FITAITPANEAVLVTTPDIT  201 (340)
Q Consensus       126 ~~~~~l~~l~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~D~VIiD~~~~~~-~-~-~~~~l~~ad~viiv~~~~~~  201 (340)
                        .++++++|++............... ..+.+.+.. +.++||||||||++... . . ...++.+||.+++|++|+..
T Consensus        78 --~~~i~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~yD~vlID~~~~~~~~~~~~~~al~aad~vlip~~p~~~  154 (273)
T PRK13232         78 --FGDIKCVESGGPEPGVGCAGRGIITSIGLLENLGA-YTDDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELM  154 (273)
T ss_pred             --CCCeEEEeCCCCCCCCCCCCCchhHHHHHHHHccc-ccccCCEEEEecCCCeeECCEeccccccccceEEEecCchHH
Confidence              4789999986543221111011111 123344432 45579999999987653 1 1 12234589999999999999


Q ss_pred             hHHHHHHHHHHHHhc---CCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCC
Q 047623          202 SLRDADRVTGLLECD---GIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPP  278 (340)
Q Consensus       202 s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~  278 (340)
                      ++.++.++++.++..   +.+..++|+|+.+...    .....+++.+.++..+++.||++..+.++...|+|+..+.|+
T Consensus       155 sl~~~~~~~k~l~~~~~~~l~~~GiV~n~~~~~~----~~~~~e~l~~~~~~~vl~~Ip~~~~v~~A~~~g~pv~~~~p~  230 (273)
T PRK13232        155 AIYAANNICKGLAKFAKGGARLGGIICNSRNVDG----ERELLEAFAKKLGSQLIHFVPRDNIVQRAEINRKTVIDFDPE  230 (273)
T ss_pred             HHHHHHHHHHHHHHHhCCCCceeEEEEeCCCCCc----cHHHHHHHHHHhCCCeEEECCCCHHHHHHHHcCCCeEEeCCC
Confidence            999999888888753   4456789999864321    122356788889988999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHhccccchhhhccCccccchhhhhc
Q 047623          279 TLAGLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFSFFG  317 (340)
Q Consensus       279 s~~~~~~~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~  317 (340)
                      ++.+++|.+++++|+++....   .+.+-..+.++.|.+
T Consensus       231 s~~a~~y~~La~el~~~~~~~---~~~~~~~~~~~~~~~  266 (273)
T PRK13232        231 SNQAKEYLTLAHNVQNNDKLV---VPTPLPMEELEAMMV  266 (273)
T ss_pred             ChHHHHHHHHHHHHHhCCCCC---CCCCCCHHHHHHHHH
Confidence            999999999999999885322   123334345555544

>CHL00072 chlL photochlorophyllide reductase subunit L

Probab=100.00  E-value=2.3e-32  Score=247.84  Aligned_cols=248  Identities=21%  Similarity=0.264  Sum_probs=186.4

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhcc-CCcCCCcccHHHhhcC------CCccccceecc
Q 047623           53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLL-GLENRVNYTVVEVLNG------DCRLDQALVRD  125 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~-~~~~~~~~~l~~~l~~------~~~~~~~~~~~  125 (340)
                      |+|+| ||||||||+|+|||+.||++|+||++||+|+| +++..++ |..   ..++.+++.+      ....++.+...
T Consensus         3 ia~~g-KGGVGKTTta~nLA~~La~~G~rVLlID~DpQ-~n~t~~l~g~~---~~~i~~~~~~~~~~~~~~~~~~~i~~~   77 (290)
T CHL00072          3 LAVYG-KGGIGKSTTSCNISIALARRGKKVLQIGCDPK-HDSTFTLTGFL---IPTIIDTLQSKDYHYEDVWPEDVIYKG   77 (290)
T ss_pred             EEEEC-CCCCcHHHHHHHHHHHHHHCCCeEEEEeccCC-CcccccccCcC---CCCHHHHHhhcccccccCChhheEEeC
Confidence            88886 99999999999999999999999999999999 7666554 442   2467777643      23344444332


Q ss_pred             cccCceeEeecCCCCCCCCCCc-chhhHHHHHHHHHHhccCCCCEEEEcCCCCCC-HHHHHHHhcCCeEEEEeCCChhhH
Q 047623          126 KRWSNFELLCISKPRSKLPLGF-GGKALTWVVEALKSRQEGSPDFILIDCPAGID-AGFITAITPANEAVLVTTPDITSL  203 (340)
Q Consensus       126 ~~~~~l~~l~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~-~~~~~~l~~ad~viiv~~~~~~s~  203 (340)
                        .++++++|++.......... .......+++.+.. . ++||||||||++.+. ....+++..||.+++|+.++..++
T Consensus        78 --~~~l~lip~~~~~~~~~~~~~~~~~~~~ll~~l~~-~-~~yD~IiIDt~~~l~~~a~~aal~~AD~viIp~~p~~~sl  153 (290)
T CHL00072         78 --YGGVDCVEAGGPPAGAGCGGYVVGETVKLLKELNA-F-YEYDIILFDVLGDVVCGGFAAPLNYADYCIIITDNGFDAL  153 (290)
T ss_pred             --CCCeEEEeCCCCCCccchhhcccHHHHHHHHHhhc-c-ccCCEEEEecCCcceechhhhhhhcCCEEEEEecCCHHHH
Confidence              47999999887764432211 11112234555543 1 369999999988764 334567888999999999999999


Q ss_pred             HHHHHHHHHHHhc----CCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCCC
Q 047623          204 RDADRVTGLLECD----GIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPT  279 (340)
Q Consensus       204 ~~~~~~~~~l~~~----~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~s  279 (340)
                      .++.++++.++..    +....++|+|+++.+.       ...++.+.++.+++..||++..+.++...|+|+.++.|++
T Consensus       154 ~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~~~-------~~~~~~~~~~~~vl~~Ip~~~~v~~A~~~g~pv~~~~p~s  226 (290)
T CHL00072        154 FAANRIAASVREKARTHPLRLAGLVGNRTSKRD-------LIDKYVEACPMPVLEVLPLIEDIRVSRVKGKTLFEMVESE  226 (290)
T ss_pred             HHHHHHHHHHHHHhccCCCceEEEEEeCCCchh-------HHHHHHHHcCCceEEECCCChHHHHHHhCCCceEEeCCCC
Confidence            9999999888753    3457889999987432       2455678889999999999999999999999999999998


Q ss_pred             H----HHHHHHHHHHHHHhccccchhhhccCccccchhhhhccc
Q 047623          280 L----AGLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFSFFGLG  319 (340)
Q Consensus       280 ~----~~~~~~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (340)
                      +    .+++|.+|+++|+++.+..   .+-....+.|++++.++
T Consensus       227 ~~~~~~a~~y~~La~ell~~~~~~---~~~~~~~~~~~~~~~~~  267 (290)
T CHL00072        227 PSLNYVCDYYLNIADQLLSQPEGV---VPKEVPDRELFSLLSDF  267 (290)
T ss_pred             cchhHHHHHHHHHHHHHHhCCCCc---CCCCCCHHHHHHHHHHh
Confidence            8    5899999999999885432   22344445787777654

>PRK13233 nifH nitrogenase reductase; Reviewed

Probab=100.00  E-value=1.5e-32  Score=248.57  Aligned_cols=236  Identities=19%  Similarity=0.297  Sum_probs=174.7

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCC----Ccccccee
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLAR-LGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGD----CRLDQALV  123 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~-~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~----~~~~~~~~  123 (340)
                      |+++|+|. +||||||||+|+|||..||+ +|+||++||+|+|......++|...  ..++.+++.+.    ...++ +.
T Consensus         1 M~~vIav~-~KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq~~~t~~~~g~~~--~~~l~~~l~~~~~~~~~~~~-~~   76 (275)
T PRK13233          1 MTRKIAIY-GKGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKADSTRLILGGKP--QTTMMDTLRELGEEKVTPDK-VI   76 (275)
T ss_pred             CceEEEEE-cCCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcCcChHHHHhCCCC--CCcHHHHHHHhCCCCCCHHH-He
Confidence            56899999 89999999999999999998 5999999999999444444567553  36888888642    12233 22


Q ss_pred             cccccCceeEeecCCCCCCCCCCcchhhHH--HHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHh------cCCeEEEE
Q 047623          124 RDKRWSNFELLCISKPRSKLPLGFGGKALT--WVVEALKSRQEGSPDFILIDCPAGIDAGFITAIT------PANEAVLV  195 (340)
Q Consensus       124 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~--~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~------~ad~viiv  195 (340)
                       .+.+++++++|++........ .......  .+.+.+.. +.++||||||||++..   +.+++.      +||.+++|
T Consensus        77 -~~~~~~l~~ipa~~~~~~~~~-~~~~~~~~~~l~~~l~~-~~~~yD~iliD~~~~~---~~~al~~~~~~~aad~viIp  150 (275)
T PRK13233         77 -KTGFKDIRCVESGGPEPGVGC-AGRGVITAIDLMEENGA-YTDDLDFVFFDVLGDV---VCGGFAMPIRDGKAQEVYIV  150 (275)
T ss_pred             -eeCCCCcEEEECCCCCCCCCC-CCcchhHHHHHHHHcCC-ccCCCCEEEEecCCce---eeccccccchhccCceEEEe
Confidence             234589999998865432111 1111111  13333332 3557999999995533   333343      79999999


Q ss_pred             eCCChhhHHHHHHHHHHHH----hcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCc
Q 047623          196 TTPDITSLRDADRVTGLLE----CDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYP  271 (340)
Q Consensus       196 ~~~~~~s~~~~~~~~~~l~----~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~  271 (340)
                      +.++..++.++.++++.+.    ..+.+..++|+|+.....    .....+++.+.++.++++.||++..+.++...|+|
T Consensus       151 ~~p~~~sl~g~~~l~~~i~~~~~~~~l~~~Giv~n~~~~~~----~~~~~e~l~~~~~~~~l~~Ip~~~~v~~A~~~g~p  226 (275)
T PRK13233        151 ASGEMMAIYAANNICKGLVKYAEQSGVRLGGIICNSRNVDG----ELELLEEFTDAIGTQMIHFVPRDNIVQKAEFNKKT  226 (275)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhcCCCceeEEEeeCCCCCc----HHHHHHHHHHHcCCceeeecCcchHHHHHHHcCCC
Confidence            9999999999999877763    335567889999753221    11235678888998888999999999999999999


Q ss_pred             eEeeCCCCHHHHHHHHHHHHHHhcccc
Q 047623          272 LVLNKPPTLAGLAFEQAAWRLVEQDSM  298 (340)
Q Consensus       272 v~~~~~~s~~~~~~~~la~~i~~~~~~  298 (340)
                      +.++.|+++++++|.+++++++++.+.
T Consensus       227 v~~~~~~s~~a~~y~~La~ell~~~~~  253 (275)
T PRK13233        227 VVEFDPDCNQAKEYKELARKIIENKDF  253 (275)
T ss_pred             EEEECCCCHHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999998654

>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein

Probab=100.00  E-value=1.6e-32  Score=247.55  Aligned_cols=250  Identities=23%  Similarity=0.311  Sum_probs=189.8

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhc------CCCccccceecc
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLN------GDCRLDQALVRD  125 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~------~~~~~~~~~~~~  125 (340)
                      +|+|. +||||||||+|+|||.+||++|+||++||+|+| ++++..++..  ...++.+++.      ++..+++.+.. 
T Consensus         2 ~i~~~-gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~q-~~~~~~l~~~--~~~~i~~~~~~~~~~~~~~~~~~~i~~-   76 (268)
T TIGR01281         2 ILAVY-GKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPK-HDSTFTLTGR--LIPTVIDVLQAVNYHYEDVRPEDVIYT-   76 (268)
T ss_pred             EEEEE-cCCcCcHHHHHHHHHHHHHhCCCeEEEEecCcc-ccccceecCC--CCCcHHHHHHhccccccCCCHHHeeEe-
Confidence            58888 799999999999999999999999999999999 7777777532  3468888884      33455555543 


Q ss_pred             cccCceeEeecCCCCCCCCCCc-chhhHHHHHHHHHHhccCCCCEEEEcCCCCCC-HHHHHHHhcCCeEEEEeCCChhhH
Q 047623          126 KRWSNFELLCISKPRSKLPLGF-GGKALTWVVEALKSRQEGSPDFILIDCPAGID-AGFITAITPANEAVLVTTPDITSL  203 (340)
Q Consensus       126 ~~~~~l~~l~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~-~~~~~~l~~ad~viiv~~~~~~s~  203 (340)
                       ..++++++|++.......... .......+++.+  .+.++||||||||++.+. .....++..||.+++|+.++..++
T Consensus        77 -~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~yD~ViID~~~~~~~~~~~~~l~aAD~vlip~~~~~~sl  153 (268)
T TIGR01281        77 -GYGGVDCVEAGGPPAGSGCGGYVVGETVKLLKEH--HILDDYDVILFDVLGDVVCGGFATPLQYADYALVVAANDFDAL  153 (268)
T ss_pred             -CCCCeEEEecCCCCCCCcccceehhhhHHHhhhc--cccccCCEEEEecCCccccCccccchhhcCEEEEEecCchhHH
Confidence             348999999887653322111 111111222222  124579999999988663 334456889999999999999999


Q ss_pred             HHHHHHHHHHHhc----CCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCCC
Q 047623          204 RDADRVTGLLECD----GIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPT  279 (340)
Q Consensus       204 ~~~~~~~~~l~~~----~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~s  279 (340)
                      .++.++++.+.+.    +.+..++|+|+++.+.       ..+++.+.++.++++.||++..+.++...|.|+.++.|++
T Consensus       154 ~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~~~-------~~~~~~~~~~~~vl~~I~~~~~v~~A~~~G~pV~~~~~~~  226 (268)
T TIGR01281       154 FAANRIAASVQEKAKNYDVRLAGIIGNRSDATD-------LIERFNERVGMPVLGVVPDLEVIRRSRVKGKTLFEMEESG  226 (268)
T ss_pred             HHHHHHHHHHHHHhhcCCCceEEEEEeCCChHH-------HHHHHHHHcCCCEEEEcCCChHHHHHHHCCCCHHHhCccc
Confidence            9999988877643    4566789999997651       2456777889999999999999999999999999988765


Q ss_pred             ----HHHHHHHHHHHHHHhccccchhhhccCccccchhhhhccc
Q 047623          280 ----LAGLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFSFFGLG  319 (340)
Q Consensus       280 ----~~~~~~~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (340)
                          ..++.|++++++++++.+.   ..+.+.-+++.|-|+++|
T Consensus       227 ~~~~~~a~~~~~la~el~~~~~~---~~~~~~~~~~~~~~~~~~  267 (268)
T TIGR01281       227 PELAAVTQEYLRMAEYLLAGPEG---VVPTPLIDREIFELLGGF  267 (268)
T ss_pred             ccchHHHHHHHHHHHHHHhcCCC---CCCCCCCHHHHHHHhhcc
Confidence                3678999999999987543   456777888999888875

The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.

>PRK13235 nifH nitrogenase reductase; Reviewed

Probab=100.00  E-value=2.8e-32  Score=246.59  Aligned_cols=257  Identities=19%  Similarity=0.249  Sum_probs=179.0

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCC---Cccccceeccc
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGD---CRLDQALVRDK  126 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~  126 (340)
                      |++|+|. +||||||||+|+|||+.||++|+|||+||+|+|..+...+++..  ...++.+++.+.   ...++.+  .+
T Consensus         1 m~~iav~-~KGGVGKTT~~~nLA~~La~~G~rVLlID~Dpq~~~t~~l~~~~--~~~~~~~~l~~~~~~~~~~~i~--~~   75 (274)
T PRK13235          1 MRKVAIY-GKGGIGKSTTTQNTVAGLAEMGKKVMVVGCDPKADSTRLLLGGL--AQKTVLDTLREEGEDVELEDIR--KE   75 (274)
T ss_pred             CCEEEEe-CCCCccHHHHHHHHHHHHHHCCCcEEEEecCCcccccccccCCC--CCccHHHHHHhcCCCCCHHHHh--hc
Confidence            4799999 69999999999999999999999999999999944444444433  246788888752   3333322  23


Q ss_pred             ccCceeEeecCCCCCCCCCCcchhhHH-HHHHHHHHh-ccCCCCEEEEcCCCCCC--H-HHHHHHhcCCeEEEEeCCChh
Q 047623          127 RWSNFELLCISKPRSKLPLGFGGKALT-WVVEALKSR-QEGSPDFILIDCPAGID--A-GFITAITPANEAVLVTTPDIT  201 (340)
Q Consensus       127 ~~~~l~~l~~~~~~~~~~~~~~~~~~~-~l~~~l~~~-~~~~~D~VIiD~~~~~~--~-~~~~~l~~ad~viiv~~~~~~  201 (340)
                      ..++++++|++..............+. .+++.+... ..++||||||||++...  . ....++.+||.+++|++++..
T Consensus        76 ~~~~l~~ip~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~yD~ilID~~~~~~~~~l~~~~a~~aad~vlIp~~~e~~  155 (274)
T PRK13235         76 GYGGTRCTESGGPEPGVGCAGRGIITSVNLLEQLGAYDDEWNLDYVFYDVLGDVVCGGFAMPIRDGKAEEIYIVCSGEMM  155 (274)
T ss_pred             CCCCCEEEeCCCCCCCCCCCCCceeehhHHHHhhchhhccCCCCEEEEECCCCCccCCcccccccccccEEEEEecCchh
Confidence            358899998774433211100011111 344444321 13579999999977542  1 112233489999999999999


Q ss_pred             hHHHHHHHHHHHHhc----CCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCC
Q 047623          202 SLRDADRVTGLLECD----GIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKP  277 (340)
Q Consensus       202 s~~~~~~~~~~l~~~----~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~  277 (340)
                      ++.++.++++.++..    +....++|+|+...+.    .....+++.+.++.++++.||++..+.++...|+|+..+.|
T Consensus       156 sl~g~~~ll~~i~~~~~~~~l~i~giv~n~~~~~~----~~e~~~~l~~~~~~~ll~~Ip~~~~v~~A~~~g~pv~~~~p  231 (274)
T PRK13235        156 AMYAANNICKGILKYADAGGVRLGGLICNSRKVDN----EREMIEELARKIGTQMIHFVPRDNFVQRAEINRKTVIEYDP  231 (274)
T ss_pred             HHHHHHHHHHHHHHHhhcCCCceeEEEEecCCCCc----hHHHHHHHHHHcCCceEEeCCCCHHHHHHHhcCCcEEEECC
Confidence            999999888877542    3445679999643221    11235577788888888999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHhccccchhhhccCccccchhhhhcc
Q 047623          278 PTLAGLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFSFFGL  318 (340)
Q Consensus       278 ~s~~~~~~~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (340)
                      +++++++|.+|+++|.++....   .+.+-....++.++..
T Consensus       232 ~s~~a~~y~~La~el~~~~~~~---~~~~~~~~~~~~~~~~  269 (274)
T PRK13235        232 THPQADEYRALARKIDENEMFV---IPKPLEIEELESLLIE  269 (274)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCC---CCCCCCHHHHHHHHHH
Confidence            9999999999999998874221   2233344455555544

>PRK13236 nitrogenase reductase; Reviewed

Probab=100.00  E-value=2.4e-32  Score=248.82  Aligned_cols=260  Identities=18%  Similarity=0.271  Sum_probs=188.4

Q ss_pred             CCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcC-----CCcccc
Q 047623           46 AGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNG-----DCRLDQ  120 (340)
Q Consensus        46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~-----~~~~~~  120 (340)
                      ...++++|+| ++||||||||+|+|||..||++|+||++||+|++.++...+++....  .++.+++.+     ...+++
T Consensus         2 ~~~~~~~~~~-~GKGGVGKTt~a~NLA~~La~~G~rVLliD~D~q~~~~~~l~~~~~~--~tl~d~~~~~~~~~~~~l~~   78 (296)
T PRK13236          2 TDENIRQIAF-YGKGGIGKSTTSQNTLAAMAEMGQRILIVGCDPKADSTRLMLHSKAQ--TTVLHLAAERGAVEDLELHE   78 (296)
T ss_pred             CCcCceEEEE-ECCCcCCHHHHHHHHHHHHHHCCCcEEEEEccCCCCccchhccCCCC--CCHHHHHHhcCCccCCCHHH
Confidence            3466799999 67999999999999999999999999999999998888878776543  588888753     345555


Q ss_pred             ceecccccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHH-hccCCCCEEEEcCCCCCCH-HHHH--HHhcCCeEEEEe
Q 047623          121 ALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKS-RQEGSPDFILIDCPAGIDA-GFIT--AITPANEAVLVT  196 (340)
Q Consensus       121 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~D~VIiD~~~~~~~-~~~~--~l~~ad~viiv~  196 (340)
                      .+.  +..+|++++|++........ .....+. .++.+.. .+.++||||+|||++.... ....  .+.+||.+|+|+
T Consensus        79 ~i~--~~~~gv~llpa~~~~~~~~~-~~~~~~~-~l~~~~~~~~~~~yD~vliD~~~~~~~~~~~~~~~l~aAD~vIIvt  154 (296)
T PRK13236         79 VML--TGFRGVKCVESGGPEPGVGC-AGRGIIT-AINFLEENGAYQDLDFVSYDVLGDVVCGGFAMPIREGKAQEIYIVT  154 (296)
T ss_pred             hhe--eCCCCeEEEECCCCCCCCCC-cceeehh-hhHHHHhcCccccCCEEEEeccccceeccccccchhccCCEEEEec
Confidence            544  23479999998754332211 1111221 2333431 1235799999999754321 1111  146899999999


Q ss_pred             CCChhhHHHHHHHHHHHH----hcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCce
Q 047623          197 TPDITSLRDADRVTGLLE----CDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPL  272 (340)
Q Consensus       197 ~~~~~s~~~~~~~~~~l~----~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v  272 (340)
                      +|+..++.++.++.+.+.    ..+.+..++|+||.+...    .....+++++.++..++++||++..+.++...|+|+
T Consensus       155 tpe~~sl~g~~~~~~~l~k~~~~~~l~i~gIv~Nr~~~~~----~~~ile~l~~~~g~~vl~~Ip~~~~v~eA~~~~~Pv  230 (296)
T PRK13236        155 SGEMMAMYAANNIARGILKYAHTGGVRLGGLICNSRNVDR----EIELIETLAKRLNTQMIHFVPRDNIVQHAELRRMTV  230 (296)
T ss_pred             CcchHHHHHHHHHHHHHHHHhhCCCceeEEEEecCCCCcc----hHHHHHHHHHHhCccceeeCCCChHHHHHHHcCCCh
Confidence            999999988876555442    335577899999853221    112357888889988899999999999999999999


Q ss_pred             EeeCCCCHHHHHHHHHHHHHHhccccchhhhccCccccchhhhhccc
Q 047623          273 VLNKPPTLAGLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFSFFGLG  319 (340)
Q Consensus       273 ~~~~~~s~~~~~~~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (340)
                      ..+.|+++++++|.+++++++++.+..++   -+-..+.+|.++++|
T Consensus       231 ~~~~p~s~~a~~y~~La~ell~~~~~~~p---~~~~~~~~~~~~~~~  274 (296)
T PRK13236        231 NEYAPDSNQGNEYRALAKKIINNDNLTIP---TPIEMEELEELLIEF  274 (296)
T ss_pred             hhcCCCCHHHHHHHHHHHHHHhcCCCCCC---CCCCHHHHHHHHHHh
Confidence            99999999999999999999998765433   334555666665543

>PRK13231 nitrogenase reductase-like protein; Reviewed

Probab=100.00  E-value=1.3e-32  Score=247.42  Aligned_cols=254  Identities=19%  Similarity=0.220  Sum_probs=181.3

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchh-ccCCcCCCcccHHHhhcCCC--ccccceeccc
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDL-LLGLENRVNYTVVEVLNGDC--RLDQALVRDK  126 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~-~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~  126 (340)
                      |++|+|. +||||||||+|+|||..|++.| ||++||+|+| +++.. +++..   ..++.+++.+..  ..+..+.  +
T Consensus         2 ~~~iav~-~KGGvGKTT~a~nLA~~La~~G-rVLliD~Dpq-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~   73 (264)
T PRK13231          2 MKKIAIY-GKGGIGKSTTVSNMAAAYSNDH-RVLVIGCDPK-ADTTRTLCGKR---IPTVLDTLKDNRKPELEDIIH--E   73 (264)
T ss_pred             ceEEEEE-CCCCCcHHHHHHHHhcccCCCC-EEEEEeEccC-cccchhhhcCC---ccHHHHHHhhcCCCChhHhhe--e
Confidence            6899999 6999999999999999999999 9999999999 55544 44432   246777776543  3334333  2


Q ss_pred             ccCceeEeecCCCCCCCCCCcchhhH-HHHHHHHHHhccCCCCEEEEcCCCCCC--HHH-HHHHhcCCeEEEEeCCChhh
Q 047623          127 RWSNFELLCISKPRSKLPLGFGGKAL-TWVVEALKSRQEGSPDFILIDCPAGID--AGF-ITAITPANEAVLVTTPDITS  202 (340)
Q Consensus       127 ~~~~l~~l~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~D~VIiD~~~~~~--~~~-~~~l~~ad~viiv~~~~~~s  202 (340)
                      .+++++++|++............... ..+.+.+.+ +.++||||||||++...  ... ...+..||.+++|++|+..+
T Consensus        74 ~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~yD~ViIDt~~~~~~~~~~~~~~~~aaD~vlip~~p~~~s  152 (264)
T PRK13231         74 GFNGILCVESGGPEPGVGCAGRGVIVAMNLLENLGV-FDEDIDVVIYDVLGDVVCGGFSVPLREDYADEVYIVTSGEYMS  152 (264)
T ss_pred             CCCCeEEEEcCCCCCCCCCcCceeeehhhhHHhhcc-ccCCCCEEEEecCCCceEccccccccccccceeEEEecCchhH
Confidence            35889999876543211110011001 123444433 35579999999987542  111 11125899999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCCCHHH
Q 047623          203 LRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAG  282 (340)
Q Consensus       203 ~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~s~~~  282 (340)
                      +.++.++++.++..+....+++.|+.+...    ......++.+.++.++++.||++..+.++...|.|+.++.|+++++
T Consensus       153 i~~~~~~~~~i~~~~~~~~~vv~~~~~~~~----~~~~~~~l~~~~~~~vl~~I~~~~~v~~a~~~g~~v~~~~~~~~aa  228 (264)
T PRK13231        153 LYAANNIARGIKKLKGKLGGIICNCRGIDN----EVEIVSEFASRIGSRIIGVIPRSNLVQESELDAKTVVETFPESEQA  228 (264)
T ss_pred             HHHHHHHHHHHHHcCCcceEEEEcCCCCcc----HHHHHHHHHHHhCCCeEEeCCCCHHHHHHHHcCCceeEeCCCChHH
Confidence            999999999988765555677877765332    2233667778889888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccccchhhhccCccccchhhhh
Q 047623          283 LAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFSFF  316 (340)
Q Consensus       283 ~~~~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~  316 (340)
                      ++|.+++++|+++.+.+.+.+....+-.+||++|
T Consensus       229 ~~~~~la~el~~~~~~~~~~~~~~~~~~~~~~~~  262 (264)
T PRK13231        229 SVYRKLANNIMNNTEFSTPEPMDDEEFEEFFKSF  262 (264)
T ss_pred             HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHh
Confidence            9999999999999866433333344444555544

>TIGR01287 nifH nitrogenase iron protein

Probab=100.00  E-value=3.8e-32  Score=245.93  Aligned_cols=258  Identities=21%  Similarity=0.291  Sum_probs=184.4

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCC----Cccccceeccc
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGD----CRLDQALVRDK  126 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~----~~~~~~~~~~~  126 (340)
                      ++|+|. +||||||||+|+|||..|+++|++|++||+|+|.+....+++..  ...++.+++.+.    ..+++.+.  +
T Consensus         1 ~~ia~~-gKGGVGKTT~a~nLA~~La~~G~~VlliD~D~q~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~i~--~   75 (275)
T TIGR01287         1 RQIAIY-GKGGIGKSTTTQNIAAALAEMGKKVMIVGCDPKADSTRLLLGGK--AQPTVLDVLREKGAEDLELEDVIK--E   75 (275)
T ss_pred             CeeEEe-CCCcCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCCccccccCCC--CCCCHHHHHhhcCCCCCCHHHeee--e
Confidence            478998 59999999999999999999999999999999944444444433  347888888754    45555553  2


Q ss_pred             ccCceeEeecCCCCCCCCCCcchhhH-HHHHHHHHHhccCCCCEEEEcCCCCCCH--H-HHHHHhcCCeEEEEeCCChhh
Q 047623          127 RWSNFELLCISKPRSKLPLGFGGKAL-TWVVEALKSRQEGSPDFILIDCPAGIDA--G-FITAITPANEAVLVTTPDITS  202 (340)
Q Consensus       127 ~~~~l~~l~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~D~VIiD~~~~~~~--~-~~~~l~~ad~viiv~~~~~~s  202 (340)
                      .+++++++|++............... ..+++.+.. +.++||||||||++....  . ....+..||.+++|++++..+
T Consensus        76 ~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~yD~iiIDt~~~~~~~~~~~~~~~~aAD~viip~~p~~~s  154 (275)
T TIGR01287        76 GFGGIRCVESGGPEPGVGCAGRGVITAINLLEELGA-YEDDLDFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMA  154 (275)
T ss_pred             CCCCEEEEeCCCCCccCCCccchhhhHHHHHHHhhh-hhccCCEEEEeccCcceecceeeccccccccEEEEEecchHHH
Confidence            45799999987554321110000100 123444433 345799999999775421  1 122335799999999999999


Q ss_pred             HHHHHHHHHHHHh----cCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCC
Q 047623          203 LRDADRVTGLLEC----DGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPP  278 (340)
Q Consensus       203 ~~~~~~~~~~l~~----~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~  278 (340)
                      +.++.++++.+..    .+....++|.|+.....    .....+++.+.++.++++.||++..+.++...|+|+.++.|+
T Consensus       155 l~~~~~l~~~i~~~~~~~~~~~~giv~n~~~~~~----~~~~~e~l~~~~~~~vl~~Ip~~~~v~~A~~~g~pv~~~~p~  230 (275)
T TIGR01287       155 LYAANNICKGILKYAKSGGVRLGGLICNSRNVDD----EKELIDEFAKKLGTQLIHFVPRSNIVQKAEIRKMTVIEYDPE  230 (275)
T ss_pred             HHHHHHHHHHHHHHHhcCCCeeeEEEEcCCCCch----HHHHHHHHHHHhCCceEEECCCChHHHHHHHcCCceEEeCCC
Confidence            9999888776543    23445567777643221    222256777888888889999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHhccccchhhhccCccccchhhhhcc
Q 047623          279 TLAGLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFSFFGL  318 (340)
Q Consensus       279 s~~~~~~~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (340)
                      ++++++|++++++|+++.+...+.+-....-.+++..|+-
T Consensus       231 s~~a~~~~~la~ell~~~~~~~~~~~~~~~~~~~~~~~~~  270 (275)
T TIGR01287       231 SEQANEYRELAKKIYENTEFVIPTPLTMDELEEILMKFGI  270 (275)
T ss_pred             CHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999876655555555666677776653

This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.

>PRK10037 cell division protein; Provisional

Probab=100.00  E-value=2e-32  Score=244.16  Aligned_cols=232  Identities=21%  Similarity=0.173  Sum_probs=171.6

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWS  129 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  129 (340)
                      |++|+|.|.||||||||+|+|||..|+++|+||++||+|+| ++++.+||.......++.+.+.+...+.+.+.+.  .+
T Consensus         1 ~~~iav~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~D~q-~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~   77 (250)
T PRK10037          1 MAILGLQGVRGGVGTTSITAALAWSLQMLGENVLVIDACPD-NLLRLSFNVDFTHRQGWARALLDGQDWRDAGLRY--TS   77 (250)
T ss_pred             CcEEEEecCCCCccHHHHHHHHHHHHHhcCCcEEEEeCChh-hhHHHHhCCCccccchHHHHHhcCCCchhhhccc--cC
Confidence            57999999999999999999999999999999999999999 7888888876543456777666555555555443  37


Q ss_pred             ceeEeecCCCCCCCCCCcch---hhHHHHHHHHHHhcc--CCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHH
Q 047623          130 NFELLCISKPRSKLPLGFGG---KALTWVVEALKSRQE--GSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLR  204 (340)
Q Consensus       130 ~l~~l~~~~~~~~~~~~~~~---~~~~~l~~~l~~~~~--~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~  204 (340)
                      +++++|++. ..........   .....+.+.+.+ ++  ++||||||||||+.+.....++..||.+++|+.++..+. 
T Consensus        78 ~l~iip~~~-~~~~~~~~~~~~~~~~~~l~~~l~~-l~~~~~yD~iiIDtpp~~~~~~~~al~aaD~vlvpv~~~~~~~-  154 (250)
T PRK10037         78 QLDLLPFGQ-LSIEEQENPQHWQTRLGDICSALQQ-LKASGRYQWILLDLPRGASPLTRQLLSLCDHSLAIVNVDANCH-  154 (250)
T ss_pred             CeEEEcCCC-CCHHHHHHHHHHHHhHHHHHHHHHH-hcccCCCCEEEEECCCCccHHHHHHHHhCCEEEEEcCcCHHHH-
Confidence            899999852 1111100000   011123344443 33  579999999999999999999999999999999986652 


Q ss_pred             HHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHh---CCcee-EEecCChHHHHHHhcCCceEeeCCCCH
Q 047623          205 DADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEML---GLALL-GVIPEDSEVIRSTNRGYPLVLNKPPTL  280 (340)
Q Consensus       205 ~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~---g~~v~-~~Ip~d~~~~~a~~~g~~v~~~~~~s~  280 (340)
                           ++..+......+.+++|+++...    .  ..+++.+.+   +.+++ ..||++..+.++...|+|++++.|+++
T Consensus       155 -----i~~~~~~~~~~~~i~~n~~~~~~----~--~~~~~~~~~~~~~~~~l~~~I~~~~~~~~a~~~g~~v~~~~~~s~  223 (250)
T PRK10037        155 -----IRLHQQALPAGAHILINDLRIGS----Q--LQDDLYQLWLQSQRRLLPMLIHRDEAMAECLAAKQPLGEYRSDSL  223 (250)
T ss_pred             -----HhhhccccCCCeEEEEecCCccc----H--HHHHHHHHHHHhcccccCccccCchhHHHHHhcCCcchhcCCcCH
Confidence                 33333322245678889987432    1  122333333   55566 579999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcccc
Q 047623          281 AGLAFEQAAWRLVEQDSM  298 (340)
Q Consensus       281 ~~~~~~~la~~i~~~~~~  298 (340)
                      ++++|+++++++++..+.
T Consensus       224 aa~~~~~l~~el~~~~~~  241 (250)
T PRK10037        224 AAEEILTLANWCLLHYSG  241 (250)
T ss_pred             HHHHHHHHHHHHHHhhcc
Confidence            999999999999998754

>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional

Probab=100.00  E-value=4.7e-32  Score=244.69  Aligned_cols=251  Identities=22%  Similarity=0.309  Sum_probs=186.0

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcC------CCccccce
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNG------DCRLDQAL  122 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~------~~~~~~~~  122 (340)
                      |+++|+|. +||||||||+|+|||.+||++|+||++||+||| ++++.+++..  ...++.+++.+      ...+++.+
T Consensus         1 m~~iIav~-~KGGVGKTT~~~nLA~~la~~G~kVLliD~Dpq-~~~t~~l~~~--~~~~~~~~l~~~~~~~~~~~~~~~i   76 (270)
T PRK13185          1 MALVLAVY-GKGGIGKSTTSSNLSAAFAKLGKKVLQIGCDPK-HDSTFTLTGK--LVPTVIDILEEVDFHSEELRPEDFV   76 (270)
T ss_pred             CceEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEeccCC-cchhhhhcCC--CCCcHHHHHHhccccccCCCHHHhe
Confidence            57999998 699999999999999999999999999999999 8887777643  24678888843      33445554


Q ss_pred             ecccccCceeEeecCCCCCCCCCCc-chhhHHHHHHHHHHhccCCCCEEEEcCCCCCC-HHHHHHHhcCCeEEEEeCCCh
Q 047623          123 VRDKRWSNFELLCISKPRSKLPLGF-GGKALTWVVEALKSRQEGSPDFILIDCPAGID-AGFITAITPANEAVLVTTPDI  200 (340)
Q Consensus       123 ~~~~~~~~l~~l~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~-~~~~~~l~~ad~viiv~~~~~  200 (340)
                      ..  .++|++++|++.......... .......+++.+  .+.++||||||||++... ....+++..||.+|+|+.++.
T Consensus        77 ~~--~~~~l~~ip~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~yD~viIDt~g~~~~~~~~~~l~~AD~viip~~~~~  152 (270)
T PRK13185         77 YE--GYNGVDCVEAGGPPAGTGCGGYVVGETVKLLKEH--HLLDDYDVILFDVLGDVVCGGFAAPLQYADYALIVTANDF  152 (270)
T ss_pred             ee--CCCCcEEEECCCCCCCCCccchhHHHHHHHHHhc--CccccCCEEEEecCCCcccCcccchhhhCcEEEEEecCch
Confidence            42  358999999887653322111 011111223222  134579999999987663 334566889999999999999


Q ss_pred             hhHHHHHHHHHHHHh----cCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeC
Q 047623          201 TSLRDADRVTGLLEC----DGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNK  276 (340)
Q Consensus       201 ~s~~~~~~~~~~l~~----~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~  276 (340)
                      .++.++.++++.++.    .+.+..++|+|+++..       ...+++.+.++.++++.||++..+.++...|.|+.++.
T Consensus       153 ~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~~-------~~~~~~~~~~g~~vl~~Ip~~~~i~~A~~~G~pv~~~~  225 (270)
T PRK13185        153 DSIFAANRIAAAIQAKAKNYKVRLAGVIANRSAGT-------DLIDKFNEAVGLKVLAHVPDLDAIRRSRLKGKTLFEME  225 (270)
T ss_pred             hhHHHHHHHHHHHHhhhhccCCCceEEEEeccChH-------HHHHHHHHHcCCCEEEECCCCcccChHHHcCCcHhhhC
Confidence            999999998888763    2345678999997632       12467778889999999999999999999999999998


Q ss_pred             CCC----HHHHHHHHHHHHHHhccccchhhhccCccccchhhhhc
Q 047623          277 PPT----LAGLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFSFFG  317 (340)
Q Consensus       277 ~~s----~~~~~~~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~  317 (340)
                      |++    +++++|++++++++++...-   .+.+.+.+..|..++
T Consensus       226 ~~~~~~~~aa~~~~~la~el~~~~~~~---~~~~~~~~~~~~~~~  267 (270)
T PRK13185        226 ETDPGLEEVQNEYLRLAEQLLAGPEPL---VPKPLKDREIFELLG  267 (270)
T ss_pred             cCCccchHHHHHHHHHHHHHHhcCCCC---CCCCCCHHHHHHhhc
Confidence            864    48899999999999876432   234445555555543

>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase

Probab=100.00  E-value=7.8e-32  Score=243.31  Aligned_cols=240  Identities=23%  Similarity=0.294  Sum_probs=174.4

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCC----ccccceecc
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDC----RLDQALVRD  125 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~----~~~~~~~~~  125 (340)
                      |++|+|. +||||||||+|+|||..|+++|+||++||+|+| +++...++.. ....++.+++.+..    .+++.+.. 
T Consensus         1 m~~iav~-~KGGvGKTT~~~nLA~~La~~G~kVlliD~Dpq-~n~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~-   76 (270)
T cd02040           1 MRQIAIY-GKGGIGKSTTTQNLSAALAEMGKKVMIVGCDPK-ADSTRLLLGG-KAIPTVLDTLREKGEVELELEDVIFE-   76 (270)
T ss_pred             CcEEEEE-eCCcCCHHHHHHHHHHHHHhCCCeEEEEEcCCC-CCchhhhcCC-CCCCcHHHHHHhhcccccchhhheee-
Confidence            5789999 699999999999999999999999999999999 6555444322 22467888876422    44454433 


Q ss_pred             cccCceeEeecCCCCCCCCCCcchh-hHHHHHHHHHHhccCCCCEEEEcCCCCCC--HH-HHHHHhcCCeEEEEeCCChh
Q 047623          126 KRWSNFELLCISKPRSKLPLGFGGK-ALTWVVEALKSRQEGSPDFILIDCPAGID--AG-FITAITPANEAVLVTTPDIT  201 (340)
Q Consensus       126 ~~~~~l~~l~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~D~VIiD~~~~~~--~~-~~~~l~~ad~viiv~~~~~~  201 (340)
                       ..++++++|++............. ....+++.+. .+.++||||||||++...  .. ....+..||.+++|+.|+..
T Consensus        77 -~~~~l~~ip~~~~~~~~~~~~~~~~~~~~~l~~l~-~~~~~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~~  154 (270)
T cd02040          77 -GFGGIKCVESGGPEPGVGCAGRGVITAINLLEELG-AYEDDLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMM  154 (270)
T ss_pred             -cCCCeEEEeCCCCCCCCCCcCcchhhHHHHHHhcC-ccccCCCEEEEecccCcccCCcccccccccccEEEEEecCchH
Confidence             358899999887654332211111 0112233332 245579999999987542  11 12223479999999999999


Q ss_pred             hHHHHHHHHHHHHhc----CCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCC
Q 047623          202 SLRDADRVTGLLECD----GIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKP  277 (340)
Q Consensus       202 s~~~~~~~~~~l~~~----~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~  277 (340)
                      ++.++.++++.+...    +.+..++|.|+.....    .....+++++.++.++++.||++..+.++...|+|+.++.|
T Consensus       155 sl~~~~~l~~~i~~~~~~~~~~l~gVv~n~~~~~~----~~~~~~~l~~~~g~~vl~~Ip~~~~v~~A~~~g~pv~~~~p  230 (270)
T cd02040         155 ALYAANNICKGILKYAKSGGVRLGGLICNSRNTDR----EDELIDAFAKRLGTQMIHFVPRDNVVQRAELRGKTVIEYDP  230 (270)
T ss_pred             HHHHHHHHHHHHHHhCccCCCceEEEEEecCCChh----HHHHHHHHHHHcCCCeEeecCCcHHHHHHHHcCCceEEecC
Confidence            999998888777543    3455667778743321    12235677788999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHhccccc
Q 047623          278 PTLAGLAFEQAAWRLVEQDSMK  299 (340)
Q Consensus       278 ~s~~~~~~~~la~~i~~~~~~~  299 (340)
                      +++++++|.+++++++++.+..
T Consensus       231 ~~~aa~~~~~La~el~~~~~~~  252 (270)
T cd02040         231 ESKQADEYRELARKIVENKLLV  252 (270)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCC
Confidence            9999999999999999987664

Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.

>PRK11670 antiporter inner membrane protein; Provisional

Probab=100.00  E-value=1.8e-31  Score=248.96  Aligned_cols=243  Identities=23%  Similarity=0.291  Sum_probs=174.1

Q ss_pred             CCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecc
Q 047623           46 AGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRD  125 (340)
Q Consensus        46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  125 (340)
                      ..+++++|+|+|+||||||||+|+|||..||+.|+||++||+|++.+++..+||.++.....     .....+.......
T Consensus       103 ~~~~~~vIaV~S~KGGVGKTT~avNLA~aLA~~G~rVlLID~D~qgps~~~~lg~~~~~~~~-----~~~~~i~p~~~~g  177 (369)
T PRK11670        103 VNGVKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAEDQRPTS-----PDGTHMAPIMAHG  177 (369)
T ss_pred             CCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCCCcchhcCCcccCCcc-----cCCceeeeeeccC
Confidence            44678999999999999999999999999999999999999999988888889875421100     0000111000000


Q ss_pred             cccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHH--HHHHhcCCeEEEEeCCChhhH
Q 047623          126 KRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGF--ITAITPANEAVLVTTPDITSL  203 (340)
Q Consensus       126 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~--~~~l~~ad~viiv~~~~~~s~  203 (340)
                      .....+.++... .  .............+.+.+.+.++++||||||||||+.++..  ...+..+|.+++|++|+..++
T Consensus       178 ~~~~~~~~l~~~-~--~~~i~~g~~~~~~l~~~l~~~~~~~yDyvIID~PPg~gd~~l~~~~l~aad~viiV~tp~~~s~  254 (369)
T PRK11670        178 LATNSIGYLVTD-D--NAMVWRGPMASKALMQMLQETLWPDLDYLVLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQDIAL  254 (369)
T ss_pred             cccccHHHhcCc-C--cceeecCcchHHHHHHHHHHHhhccCCEEEEeCCCCCchHHHHHhhhccCCeEEEEecCchhHH
Confidence            000000011000 0  00000111112234444434445579999999999987743  445667999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCceEEEEecccCCcccc---ccc---ccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCC
Q 047623          204 RDADRVTGLLECDGIRDIKMVVNRVRTDMIKG---EDM---MSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKP  277 (340)
Q Consensus       204 ~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~---~~~---~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~  277 (340)
                      ..+.+.++.+...+.+.+++|+|++.......   ...   ...+++++.++.++++.||.+..+.++...|+|+..++|
T Consensus       255 ~da~~~i~~~~~~~~~ilGiV~Nm~~~~~~~~~~~~~if~~~~~~~lae~~~~~ll~~IP~~~~I~ea~~~G~Pv~~~~p  334 (369)
T PRK11670        255 IDAKKGIVMFEKVEVPVLGIVENMSMHICSNCGHHEPIFGTGGAEKLAEKYHTQLLGQMPLHISLREDLDRGTPTVVSRP  334 (369)
T ss_pred             HHHHHHHHHHhccCCCeEEEEEcCCccccCCccchhhhcccchHHHHHHHcCCcEEEEeCCChHHHHHHHCCCcEEEeCC
Confidence            99999999888888899999999986543211   110   136788899999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHhcc
Q 047623          278 PTLAGLAFEQAAWRLVEQD  296 (340)
Q Consensus       278 ~s~~~~~~~~la~~i~~~~  296 (340)
                      +++.+++|.+++++++.+.
T Consensus       335 ~s~~a~~y~~LA~el~~~~  353 (369)
T PRK11670        335 ESEFTAIYRQLADRVAAQL  353 (369)
T ss_pred             CCHHHHHHHHHHHHHHHHH
Confidence            9999999999999998885

>cd02032 Bchl_like This family of proteins contains bchL and chlL

Probab=100.00  E-value=4.2e-32  Score=244.62  Aligned_cols=249  Identities=22%  Similarity=0.280  Sum_probs=188.2

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhc------CCCccccceecc
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLN------GDCRLDQALVRD  125 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~------~~~~~~~~~~~~  125 (340)
                      +|+|.| ||||||||+|+|||+.||++|+||++||+|+| ++++..++..  ...++.+++.      +....++.+.  
T Consensus         2 ~i~v~g-KGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq-~~~~~~l~~~--~~~~l~~~~~~~~~~~~~~~~~~~i~--   75 (267)
T cd02032           2 VLAVYG-KGGIGKSTTSSNLSVALAKRGKKVLQIGCDPK-HDSTFTLTGF--LIPTVIDILEEVDFHYEELWPEDVIY--   75 (267)
T ss_pred             EEEEec-CCCCCHHHHHHHHHHHHHHCCCcEEEEecCCC-CCcceeccCC--CCCCHHHHHHhccccccCCChhheEE--
Confidence            688885 99999999999999999999999999999999 7777777643  2467888874      3445555554  


Q ss_pred             cccCceeEeecCCCCCCCCCCcc-hhhHHHHHHHHHHhccCCCCEEEEcCCCCCC-HHHHHHHhcCCeEEEEeCCChhhH
Q 047623          126 KRWSNFELLCISKPRSKLPLGFG-GKALTWVVEALKSRQEGSPDFILIDCPAGID-AGFITAITPANEAVLVTTPDITSL  203 (340)
Q Consensus       126 ~~~~~l~~l~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~-~~~~~~l~~ad~viiv~~~~~~s~  203 (340)
                      +.+++++++|++........... ......+++.+.  +.++||||||||++... .....++..||.+++|+.++..++
T Consensus        76 ~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~yD~vIIDt~g~~~~~~~~~al~~aD~vlip~~p~~~~l  153 (267)
T cd02032          76 EGYGGVDCVEAGGPPAGAGCGGYVVGETVKLLKELN--LFEEYDVILFDVLGDVVCGGFAAPLNYADYALIVTDNDFDSI  153 (267)
T ss_pred             ECCCCcEEEEcCCCCCCccccchHHHHHHHHHHHcc--ccccCCEEEEeCCCCcccccchhhhhhcCEEEEEecCCcccH
Confidence            24589999998865433221111 111122333321  34579999999988765 335667899999999999999999


Q ss_pred             HHHHHHHHHHHhc----CCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCCC
Q 047623          204 RDADRVTGLLECD----GIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPT  279 (340)
Q Consensus       204 ~~~~~~~~~l~~~----~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~s  279 (340)
                      ..+.++++.++..    +.+..++|+|+++.+.       ..+++.+.++.++++.||++..+.++...|.|+.++.+++
T Consensus       154 ~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~~~-------~i~~~~~~~~~~vl~~Ip~~~~v~~A~~~G~~v~e~~~~~  226 (267)
T cd02032         154 FAANRIAAAVREKAKTYKVRLAGLIANRTDKTD-------LIDKFVEAVGMPVLAVLPLIEDIRRSRVKGKTLFEMDESD  226 (267)
T ss_pred             HHHHHHHHHHHHHhhccCCceEEEEEeCCCHHH-------HHHHHHHhCCCCEEEEecCCccccHHHHcCCCHHHhCccc
Confidence            9999988877642    4456789999987532       2456677789999999999999999999999999998877


Q ss_pred             HH----HHHHHHHHHHHHhccccchhhhccCccccchhhhhcc
Q 047623          280 LA----GLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFSFFGL  318 (340)
Q Consensus       280 ~~----~~~~~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (340)
                      +.    +++|.+|+++++++.+..   .+.+...+..|..+++
T Consensus       227 ~~a~e~a~~y~~La~~il~~~~~~---~~~~~~~~~~~~~~~~  266 (267)
T cd02032         227 EELAYRCDYYLLIADQLLAGPEGV---VPEPLGDREIFDLLGG  266 (267)
T ss_pred             ccccHHHHHHHHHHHHHHhcCCCC---CCCCCCHHHHHHHhcc
Confidence            64    688999999999876543   3466777788877765

Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.

>PRK13230 nitrogenase reductase-like protein; Reviewed

Probab=100.00  E-value=6.7e-32  Score=244.71  Aligned_cols=258  Identities=19%  Similarity=0.180  Sum_probs=185.5

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcC----CCccccceecc
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNG----DCRLDQALVRD  125 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~----~~~~~~~~~~~  125 (340)
                      |++|+|. +||||||||+|+|||..||++|+||++||+|+| ++++.+++...  ..++.+++.+    ...+++.+.. 
T Consensus         1 ~~~i~~~-gKGGVGKTT~a~nLA~~La~~G~rVLliD~Dpq-~n~t~~l~~~~--~~~l~d~~~~~~~~~~~~~~~i~~-   75 (279)
T PRK13230          1 MRKFCFY-GKGGIGKSTTVCNIAAALAESGKKVLVVGCDPK-ADCTRNLVGEK--IPTVLDVLREKGIDNLGLEDIIYE-   75 (279)
T ss_pred             CcEEEEE-CCCCCcHHHHHHHHHHHHHhCCCEEEEEeeCCc-ccccccccCcc--CCCHHHHHHhcCCCCCCHHHheee-
Confidence            5789999 699999999999999999999999999999999 77666665433  3688898854    3455666553 


Q ss_pred             cccCceeEeecCCCCCCCCCCcchhhH--HHHHHHHHHhccCCCCEEEEcCCCCCC--H-HHHHHHhcCCeEEEEeCCCh
Q 047623          126 KRWSNFELLCISKPRSKLPLGFGGKAL--TWVVEALKSRQEGSPDFILIDCPAGID--A-GFITAITPANEAVLVTTPDI  200 (340)
Q Consensus       126 ~~~~~l~~l~~~~~~~~~~~~~~~~~~--~~l~~~l~~~~~~~~D~VIiD~~~~~~--~-~~~~~l~~ad~viiv~~~~~  200 (340)
                       .+++++++|++........ ......  ..+.+.+......+||||||||++...  . ....++..||.+++|+.|+.
T Consensus        76 -~~~~l~lipa~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~yD~viID~~~~~~~~~l~~~~~~~aAD~vlIp~~p~~  153 (279)
T PRK13230         76 -GFNGIYCVESGGPEPGYGC-AGRGVITAIDLLKKLGVFEELGPDVVIYDILGDVVCGGFAMPLQKGLADDVYIVTTCDP  153 (279)
T ss_pred             -CCCCcEEEECCCCCCCCCc-CCcchhhHHHHHHHcCcccccCCCEEEEecCCccccCCccccccccccceEEEeccchH
Confidence             3589999998865432111 000100  112222222112369999999977542  1 22334567999999999999


Q ss_pred             hhHHHHHHHHHHHHhc----CCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeC
Q 047623          201 TSLRDADRVTGLLECD----GIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNK  276 (340)
Q Consensus       201 ~s~~~~~~~~~~l~~~----~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~  276 (340)
                      .++.++.++++.+...    +....+++.| .+.... .  ....+++++.++.++++.||++..+.++...|+|+..+.
T Consensus       154 ~si~~~~~ll~~i~~~~~~~~~~i~gIv~n-~r~~~~-~--~~~~e~l~~~~g~~vl~~Ip~~~~v~eA~~~g~pv~~~~  229 (279)
T PRK13230        154 MAIYAANNICKGIKRFAKRGKSALGGIIYN-GRSVID-A--PDIVEEFAKKIGTNVIGKIPMSNIITEAEIYGKTVIEYA  229 (279)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCCcceEEEEe-ccCCCc-h--hHHHHHHHHHhCCcEEEECCCChHHHHHHHcCCeEEEeC
Confidence            9999999888777543    3334455544 322211 1  123567788899998999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHhccccchhhhccCccccchhhhhcc
Q 047623          277 PPTLAGLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFSFFGL  318 (340)
Q Consensus       277 ~~s~~~~~~~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (340)
                      |++++++.|.+++++++++.+...+-+.+..+-+-|..+++.
T Consensus       230 p~~~~a~~y~~La~ell~~~~~~~~~~~~~~~~~~~~~~~~~  271 (279)
T PRK13230        230 PDSEISNIFRELAEAIYENNTGTIPNPLEEEEIDQIGEKIKE  271 (279)
T ss_pred             CCCHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999877655555566666666666543

>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon

Probab=100.00  E-value=5.5e-32  Score=234.98  Aligned_cols=236  Identities=28%  Similarity=0.320  Sum_probs=188.0

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWS  129 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  129 (340)
                      |++|+|.|.||||||||+|+|||+.|++.|++|++||+||+ ..+...||+......++.....+.....+..++..  +
T Consensus         1 M~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~dpq-N~Lrlhfg~~~~~~~G~a~a~l~~~~W~~~~~~~~--~   77 (243)
T PF06564_consen    1 MKVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLDPQ-NLLRLHFGLPLDDRDGWARALLDGADWQQAAYRYS--D   77 (243)
T ss_pred             CcEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCcH-HHHHHhcCCCCcccccHHHHHhCCCCHHHHhhccC--C
Confidence            68999999999999999999999999999999999999999 99999999987666777755555556666656554  8


Q ss_pred             ceeEeecCCCCCCCCCCc--chhhHHHHHHHHHHhc-cCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHH
Q 047623          130 NFELLCISKPRSKLPLGF--GGKALTWVVEALKSRQ-EGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDA  206 (340)
Q Consensus       130 ~l~~l~~~~~~~~~~~~~--~~~~~~~l~~~l~~~~-~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~  206 (340)
                      +++++|.+.........+  -......+.+.+.++. ...||+||||+|++.+..+..++..||.+++|+.++..|...+
T Consensus        78 g~~~LPfG~l~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~~~iliD~P~g~~~~~~~al~~aD~vL~V~~~Da~s~~~L  157 (243)
T PF06564_consen   78 GVDFLPFGQLTEAEREAFEQLAQDPQWLARALAALKALGPYDWILIDTPPGPSPYTRQALAAADLVLVVVNPDAASHARL  157 (243)
T ss_pred             CCEEEcCCCCCHHHHHHHHHhhcCHHHHHHHHHHHhccCCCCEEEEeCCCCCcHHHHHHHHhCCeEEEEeCCCHHHHHHH
Confidence            999999886543322111  1112234455555543 4679999999999999999999999999999999999987655


Q ss_pred             HHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCCCHHHHHHH
Q 047623          207 DRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFE  286 (340)
Q Consensus       207 ~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~s~~~~~~~  286 (340)
                      .+.      .-.....+++|++++......+..  +-.++.++..+.+.|.+|+.+.|+...+.|+.++.|.|.+++++.
T Consensus       158 ~q~------~l~~~~~~liNq~~~~s~l~~D~~--~~~~~~l~~llp~~IHrDeAv~EAlA~~~~v~~yaP~S~Aa~D~~  229 (243)
T PF06564_consen  158 HQR------ALPAGHRFLINQYDPASQLQRDLL--QVWRQSLGRLLPGVIHRDEAVAEALASGQPVGEYAPHSQAAEDIQ  229 (243)
T ss_pred             HHh------cccCCcEEEEeccCccchHHHHHH--HHHHHhhccccceeeecchHHHHHHhcCCCccccCccCHHHHHHH
Confidence            431      112356899999999886666653  334566676666899999999999999999999999999999999


Q ss_pred             HHHHHHHhcc
Q 047623          287 QAAWRLVEQD  296 (340)
Q Consensus       287 ~la~~i~~~~  296 (340)
                      .||.+++.+.
T Consensus       230 ~LA~W~l~~~  239 (243)
T PF06564_consen  230 TLANWCLSHL  239 (243)
T ss_pred             HHHHHHHHHh
Confidence            9999988765

It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.

>PRK13234 nifH nitrogenase reductase; Reviewed

Probab=100.00  E-value=6.3e-32  Score=245.99  Aligned_cols=259  Identities=18%  Similarity=0.242  Sum_probs=187.2

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcC-----CCcccccee
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNG-----DCRLDQALV  123 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~-----~~~~~~~~~  123 (340)
                      ++++|+|. +||||||||+++|||..|++.|+|||+||+|+|.++...+++...  ..++.+++.+     ...+++.+.
T Consensus         3 ~~~~iai~-~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~   79 (295)
T PRK13234          3 KLRQIAFY-GKGGIGKSTTSQNTLAALVEMGQKILIVGCDPKADSTRLILNAKA--QDTVLSLAAEAGSVEDLELEDVMK   79 (295)
T ss_pred             cceEEEEE-CCCCccHHHHHHHHHHHHHHCCCeEEEEecccccccccccccCCC--CCcHHHHHHhcCCcccccHHHHhe
Confidence            46899997 999999999999999999999999999999999666655554433  3577888743     334444443


Q ss_pred             cccccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHh-ccCCCCEEEEcCCCCCC-HHHHHHH--hcCCeEEEEeCCC
Q 047623          124 RDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSR-QEGSPDFILIDCPAGID-AGFITAI--TPANEAVLVTTPD  199 (340)
Q Consensus       124 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~D~VIiD~~~~~~-~~~~~~l--~~ad~viiv~~~~  199 (340)
                        +..+|++++|++.........-....+.  .+.+.+. +.++||||||||++... ......+  .+||.+|+|+.++
T Consensus        80 --~~~~gl~lipa~~~~~~~~~~~~~~~l~--~~~l~~~~~~~~yD~IlID~~~~~~~nal~~~~~~~aAD~vIIPv~pe  155 (295)
T PRK13234         80 --IGYKGIKCVESGGPEPGVGCAGRGVITS--INFLEENGAYDDVDYVSYDVLGDVVCGGFAMPIRENKAQEIYIVMSGE  155 (295)
T ss_pred             --ecCCCeEEEECCCCCCCCCCCcceeeeH--HHHHHHcCCCccCCEEEEEcCCCceECCCccccccccCceEEEecCcc
Confidence              3347999999875443211000011111  0123321 23579999999965432 1222222  3899999999999


Q ss_pred             hhhHHHHHHHHHHHHhc----CCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEee
Q 047623          200 ITSLRDADRVTGLLECD----GIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLN  275 (340)
Q Consensus       200 ~~s~~~~~~~~~~l~~~----~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~  275 (340)
                      ..++.++.++++.+.+.    +.+..++|+|+.+...    +....+++.+.++.++++.||++..+.++...|+|+..+
T Consensus       156 ~~Sl~gl~~l~~~i~~~~~~~~l~~~gIV~N~~rt~~----~~~~~e~l~e~~g~~ll~~Ip~d~~V~eA~~~g~pv~~~  231 (295)
T PRK13234        156 MMALYAANNIAKGILKYANSGGVRLGGLICNERQTDR----ELELAEALAARLGSKLIHFVPRDNIVQHAELRRMTVIEY  231 (295)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCch----HHHHHHHHHHHhCCceEEECCCchHHHHHHHcCCceEEE
Confidence            99999999998888653    3567889999655432    222356777888988889999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHhccccchhhhccCccccchhhhhccce
Q 047623          276 KPPTLAGLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFSFFGLGV  320 (340)
Q Consensus       276 ~~~s~~~~~~~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (340)
                      .|+++.+++|.+++++++++.+..  .++.+-....++.++++|-
T Consensus       232 ~p~s~aa~~y~~La~ell~~~g~~--~~p~~~~~~~~~~~~~~~~  274 (295)
T PRK13234        232 APDSKQAGEYRALAEKIHANSGKG--TIPTPITMEELEDMLMDFG  274 (295)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCCC--cCCCCCCHHHHHHHHHHHh
Confidence            999999999999999999986531  2234455567888887764

>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=3.7e-31  Score=227.67  Aligned_cols=248  Identities=31%  Similarity=0.401  Sum_probs=194.2

Q ss_pred             CCCCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCcccccee
Q 047623           44 ELAGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALV  123 (340)
Q Consensus        44 ~~~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  123 (340)
                      +...+...+|+|.|+||||||||+|+|||..||..|++|.++|.|...+++.+++|.+.+..+      +....+.. +.
T Consensus        41 ~~l~~vk~iI~VlSGKGGVGKSTvt~nla~~La~~g~~vglLD~Dl~GPSiP~m~g~e~~~~~------~~~~g~~P-v~  113 (300)
T KOG3022|consen   41 ENLSGVKHIILVLSGKGGVGKSTVTVNLALALASEGKKVGLLDADLCGPSIPRMMGLEGEVVH------QSDNGWIP-VV  113 (300)
T ss_pred             ccccccceEEEEEeCCCCCchhHHHHHHHHHHhcCCCcEEEEeecccCCCchhhcCCCCceee------ecCCCcee-ee
Confidence            345677899999999999999999999999999999999999999999999999999876411      11111111 12


Q ss_pred             cccccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhc---CCeEEEEeCCCh
Q 047623          124 RDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITP---ANEAVLVTTPDI  200 (340)
Q Consensus       124 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~---ad~viiv~~~~~  200 (340)
                      .+..+..+.+-..............+.....+.+.+++.-..+.||+||||||+.++....+...   +|..++|++|..
T Consensus       114 ~~~~l~~mS~gfLl~~~~~~vIwRGpkk~~~I~qflk~vdwg~lDyLviDtPPGtsDehls~~~~~~~~~gAviVTTPQ~  193 (300)
T KOG3022|consen  114 VNKNLKLMSMGFLLKPRDDSVIWRGPKKNSMIKQFLKDVDWGELDYLVIDTPPGTSDEHLSLVQFLRESDGAVIVTTPQE  193 (300)
T ss_pred             ecCCeEEEEeeeecCCCCccceeechHHHHHHHHHHhcCCCCCcCEEEEeCCCCCChhhhheeecccccCceEEEeCchh
Confidence            22222222222222332333334556666777778888777889999999999998877776544   466999999999


Q ss_pred             hhHHHHHHHHHHHHhcCCCceEEEEecccCCcc---ccccccc---HHHHHHHhCCceeEEecCChHHHHHHhcCCceEe
Q 047623          201 TSLRDADRVTGLLECDGIRDIKMVVNRVRTDMI---KGEDMMS---VLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVL  274 (340)
Q Consensus       201 ~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~---~~~~~~~---~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~  274 (340)
                      .++..+.+-+++++..+++.+++|-||..-...   .......   .+++.+.+|+++++.||-|+.+.++.+.|.|+.+
T Consensus       194 vAl~Dv~K~i~fc~K~~I~ilGvVENMs~f~Cp~C~~~~~iF~~gGg~~l~~~~glp~Lg~iPld~~i~~~~d~G~~~v~  273 (300)
T KOG3022|consen  194 VALQDVRKEIDFCRKAGIPILGVVENMSGFVCPKCGHSTNIFGSGGGERLAEELGLPLLGSLPLDPLIAESSDSGVPFVE  273 (300)
T ss_pred             hhhHHHHhhhhhhhhcCCceEEEEeccccccCCCCCCcceeccCccHHHHHHHcCCCeEeecCCCHHHHHhccCCCeeEe
Confidence            999999999999999999999999999653321   1112223   3788899999999999999999999999999999


Q ss_pred             eCCCCHHHHHHHHHHHHHHhcccc
Q 047623          275 NKPPTLAGLAFEQAAWRLVEQDSM  298 (340)
Q Consensus       275 ~~~~s~~~~~~~~la~~i~~~~~~  298 (340)
                      .+|.|+++.+|.+++++|.+....
T Consensus       274 ~~p~s~~~~af~~i~~~i~~~~~~  297 (300)
T KOG3022|consen  274 EYPDSPASEAFEDIAEKLVEQLSS  297 (300)
T ss_pred             cCCCchHHHHHHHHHHHHHHhhcc
Confidence            999999999999999999998743

>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein

Probab=100.00  E-value=9.8e-31  Score=241.69  Aligned_cols=231  Identities=25%  Similarity=0.329  Sum_probs=183.9

Q ss_pred             CCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceec-
Q 047623           46 AGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVR-  124 (340)
Q Consensus        46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-  124 (340)
                      ..+++++|+|+|+|||+||||+|+|||..++++|++|++||+|++++++..+||.+..++..+.++......++..... 
T Consensus        89 ~~~~~~vIav~~~KGGvGkTT~a~nLA~~la~~g~~VlLvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~l~~  168 (322)
T TIGR03815        89 PPARGVVVAVIGGRGGAGASTLAAALALAAARHGLRTLLVDADPWGGGLDLLLGAEDVPGLRWPDLSQARGRLPAGALRD  168 (322)
T ss_pred             CCCCceEEEEEcCCCCCcHHHHHHHHHHHHHhcCCCEEEEecCCCCCCeeeeecCCCCCCcCHHHHhhcCCCcCHHHHHH
Confidence            3457899999999999999999999999999999999999999998889999998876555555554333322211100 


Q ss_pred             -ccccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhH
Q 047623          125 -DKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSL  203 (340)
Q Consensus       125 -~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~  203 (340)
                       ....+++++++++....   .......+..+++.+++    .|||||||+|+..+.....++..||.+++|+.++..++
T Consensus       169 ~~~~~~~l~vl~~~~~~~---~~~~~~~l~~~l~~l~~----~~D~VIID~p~~~~~~~~~~L~~AD~vliV~~~~~~sl  241 (322)
T TIGR03815       169 ALPRRGGLSVLSWGRAVG---AALPPAAVRAVLDAARR----GGDLVVVDLPRRLTPAAETALESADLVLVVVPADVRAV  241 (322)
T ss_pred             hCCCcCCeEEEecCCCCc---CCCCHHHHHHHHHHHHh----cCCEEEEeCCCCCCHHHHHHHHHCCEEEEEcCCcHHHH
Confidence             11137899998876542   22455667777777766    79999999999999888999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCCCHHHH
Q 047623          204 RDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGL  283 (340)
Q Consensus       204 ~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~s~~~~  283 (340)
                      ..+.++++.+...+ ..+.+|+|+..+..      ...+++++.+|.++++.||+++.+.++.++|+++. ..+++++++
T Consensus       242 ~~a~r~l~~l~~~~-~~~~lVv~~~~~~~------~~~~~i~~~lg~~v~~~Ip~d~~v~~a~~~G~~~~-~~~~~~~~~  313 (322)
T TIGR03815       242 AAAARVCPELGRRN-PDLRLVVRGPAPAG------LDPEEIAESLGLPLLGEVRDQRGLARALERGGLPA-ASRRRPLGR  313 (322)
T ss_pred             HHHHHHHHHHhhhC-CCeEEEEeCCCCCC------CCHHHHHHHhCCCceeeCCCChhHHHHHhCCCCcC-CCCCCHHHH
Confidence            99999999988654 35678888754322      24678899999999999999999999999999888 777888888


Q ss_pred             HHHHHHHH
Q 047623          284 AFEQAAWR  291 (340)
Q Consensus       284 ~~~~la~~  291 (340)
                      .+..+..+
T Consensus       314 ~~~~~l~~  321 (322)
T TIGR03815       314 AAAEVLDV  321 (322)
T ss_pred             HHHHHHhh
Confidence            88877643

Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.

>PRK13869 plasmid-partitioning protein RepA; Provisional

Probab=99.97  E-value=4.3e-31  Score=249.64  Aligned_cols=236  Identities=20%  Similarity=0.258  Sum_probs=173.7

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCC----CcccHHHhhc---CCCcccc
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENR----VNYTVVEVLN---GDCRLDQ  120 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~----~~~~l~~~l~---~~~~~~~  120 (340)
                      ..+++|+|.|.||||||||+|+|||..||++|+|||+||+|+| ++++.+||..++    ...++.+++.   +...+++
T Consensus       119 ~~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ-~~lt~~~g~~~~~~~~~~~tl~~~l~~~~~~~~~~~  197 (405)
T PRK13869        119 EHLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQ-ASLSALLGVLPETDVGANETLYAAIRYDDTRRPLRD  197 (405)
T ss_pred             CCceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCC-CCHHHHcCCCccccccccccHHHHHhccccCCCHHH
Confidence            4679999999999999999999999999999999999999999 899999987643    2345666653   2334444


Q ss_pred             ceecccccCceeEeecCCCCCCCCCCc--------chh--hHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCC
Q 047623          121 ALVRDKRWSNFELLCISKPRSKLPLGF--------GGK--ALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPAN  190 (340)
Q Consensus       121 ~~~~~~~~~~l~~l~~~~~~~~~~~~~--------~~~--~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad  190 (340)
                      .+ ..+.+++++++|++..........        ...  .+..+.+.+.+ +.++||||||||||+++..+.+++.+||
T Consensus       198 ~i-~~t~~~~ldliPa~~~l~~~e~~~~~~~~~~~~~~~~~~~~L~~~L~~-~~~~yD~IiIDtpP~l~~~t~~al~aAd  275 (405)
T PRK13869        198 VI-RPTYFDGLHLVPGNLELMEFEHTTPKALSDKGTRDGLFFTRVAQAFDE-VADDYDVVVIDCPPQLGFLTLSGLCAAT  275 (405)
T ss_pred             he-eccCCCCeeEecCCHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHH-hhccCCEEEEECCCchhHHHHHHHHHcC
Confidence            43 344568999999886543221110        000  11223333333 3457999999999999999999999999


Q ss_pred             eEEEEeCCChhhHHHHHHHHHHH-------Hhc--C--CCceEEEEecccCCcccccccccHHHHHHHhCCcee-EEecC
Q 047623          191 EAVLVTTPDITSLRDADRVTGLL-------ECD--G--IRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL-GVIPE  258 (340)
Q Consensus       191 ~viiv~~~~~~s~~~~~~~~~~l-------~~~--~--~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~-~~Ip~  258 (340)
                      .+|+|+.++..++.++.++++.+       ...  +  ...+++++|+++++...+..  -...+.+.++-.++ ..|+.
T Consensus       276 ~viiPv~p~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~il~t~~~~~~~~~~~--~~~~l~~~~~~~vl~~~I~~  353 (405)
T PRK13869        276 SMVITVHPQMLDIASMSQFLLMTRDLLGVVKEAGGNLQYDFIRYLLTRYEPQDAPQTK--VAALLRNMFEDHVLTNPMVK  353 (405)
T ss_pred             EEEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEEEEeECCCCcHHHH--HHHHHHHHhhhhhccCcCcc
Confidence            99999999999999988887632       222  2  23568999999876433222  25567777887666 68999


Q ss_pred             ChHHHHHHhcCCceEeeCCCCHHHHHHHHH
Q 047623          259 DSEVIRSTNRGYPLVLNKPPTLAGLAFEQA  288 (340)
Q Consensus       259 d~~~~~a~~~g~~v~~~~~~s~~~~~~~~l  288 (340)
                      +..+.++...|+|++++.|.+..++.|.+.
T Consensus       354 s~ai~~a~~~~~tv~e~~~~~~~~~~y~ra  383 (405)
T PRK13869        354 SAAVSDAGLTKQTLYEIGRENLTRSTYDRA  383 (405)
T ss_pred             hHHHHhhHhcCCChhhcCCCcCCHHHHHHH
Confidence            999999999999999998875444444333

>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=99.97  E-value=1.4e-30  Score=233.64  Aligned_cols=245  Identities=22%  Similarity=0.302  Sum_probs=183.1

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCcc-ccceeccc
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLA-RLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRL-DQALVRDK  126 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la-~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~  126 (340)
                      ++++|+|.|.||||||||+|+|||.+|| .+|+||++||+||| ++++.+++.+........+++...... +...... 
T Consensus         1 ~~~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ-~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   78 (259)
T COG1192           1 MMKIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQ-GSLTSWLGLRPDLEGDLYNLLSGLKERPDILDYTV-   78 (259)
T ss_pred             CCEEEEEEecCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCCc-chhhHhcCCCcccchhHHHHHhcccccccchhccc-
Confidence            5799999999999999999999999999 55799999999999 999999988765223444444433222 2222222 


Q ss_pred             ccCceeEeecCCCCCC-CCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHH
Q 047623          127 RWSNFELLCISKPRSK-LPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRD  205 (340)
Q Consensus       127 ~~~~l~~l~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~  205 (340)
                      ..++++++|+...... .............++.+.+...++||||||||||+.+..+.+++.+||.+++|+.++..++.+
T Consensus        79 ~~~~ld~ips~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~yD~iiID~pp~l~~l~~nal~asd~vlIP~~~~~~~~~~  158 (259)
T COG1192          79 VIEGLDLIPSNIDLAEGAEIELNAVAKELLLKRLLDPVKDDYDYIIIDTPPSLGVLTLNALAAADHVLIPVQPEFLDLEG  158 (259)
T ss_pred             CCCCceEecCChHHHhHHHHHHhhhhHHHHHHHHhhhhccCCCEEEECCCCchhHHHHHHHHHcCeeEEecCchHHHHHH
Confidence            3488999988766542 000010111222333333334558999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcC------CCceEEEEecccCCcccccccccHHHHHHHhCCcee-EEecCChHHHHHHhcCCceEeeCCC
Q 047623          206 ADRVTGLLECDG------IRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL-GVIPEDSEVIRSTNRGYPLVLNKPP  278 (340)
Q Consensus       206 ~~~~~~~l~~~~------~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~-~~Ip~d~~~~~a~~~g~~v~~~~~~  278 (340)
                      +..+++.+....      ....++++|++........  .....+.+.++.+++ ..||.+..+.++...|.++..+.++
T Consensus       159 ~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~g~~~~~~~~~  236 (259)
T COG1192         159 LEQLLNTLEDLLKLRRNKLIVVGILITRFDSRTKLAD--EVLQELKQLLGDPVLKTKIPRRVAYREAAAEGKPLYEYDPK  236 (259)
T ss_pred             HHHHHHHHHHHHHhcCCCcceEEEeeceEcCCcchHH--HHHHHHHHHhccccccccCcccccHHhHHHcCCCceecCCc
Confidence            998887776431      1457789999987653222  234555666665544 7899999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHhccc
Q 047623          279 TLAGLAFEQAAWRLVEQDS  297 (340)
Q Consensus       279 s~~~~~~~~la~~i~~~~~  297 (340)
                      ++.+.+|.+++++++++..
T Consensus       237 ~~~~~~~~~~~~e~~~~~~  255 (259)
T COG1192         237 SKAAEEYYELAKELLEELL  255 (259)
T ss_pred             chHHHHHHHHHHHHHHhhh
Confidence            9999999999999998864

>TIGR03453 partition_RepA plasmid partitioning protein RepA

Probab=99.97  E-value=3.7e-30  Score=243.24  Aligned_cols=238  Identities=21%  Similarity=0.279  Sum_probs=171.3

Q ss_pred             CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCC----CcccHHHhhc---CCCccc
Q 047623           47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENR----VNYTVVEVLN---GDCRLD  119 (340)
Q Consensus        47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~----~~~~l~~~l~---~~~~~~  119 (340)
                      ++.+++|+|+|.||||||||+|+|||..|+++|+||++||+|+| ++++.++|..+.    ...++.+++.   +...+.
T Consensus       101 g~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~DpQ-~~ls~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~  179 (387)
T TIGR03453       101 GEHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDPQ-ASLSALFGYQPEFDVGENETLYGAIRYDDERRPLS  179 (387)
T ss_pred             CCCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCC-CCHHHHcCCCcccccccCccHHHHHhccccccCHH
Confidence            46679999999999999999999999999999999999999999 889999987543    2345666653   233444


Q ss_pred             cceecccccCceeEeecCCCCCCCCCCc----------chhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcC
Q 047623          120 QALVRDKRWSNFELLCISKPRSKLPLGF----------GGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPA  189 (340)
Q Consensus       120 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~----------~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~a  189 (340)
                      +.+.. +.+++++++|++..........          ....+..+.+.+.+ +.++||||||||||+++..+.+++.+|
T Consensus       180 ~~i~~-~~~~~l~lip~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-l~~~yD~IiiD~pp~~~~~~~~al~aa  257 (387)
T TIGR03453       180 EIIRK-TYFPGLDLVPGNLELMEFEHETPRALSRGQGGDTIFFARVGEALAE-VEDDYDVVVIDCPPQLGFLTLSALCAA  257 (387)
T ss_pred             hhccc-CCCCCeEEEeCCHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH-HHhcCCEEEEeCCccHhHHHHHHHHHc
Confidence            44332 3458999999875432111000          00001123333322 344899999999999999999999999


Q ss_pred             CeEEEEeCCChhhHHHHHHHHHH-------HHhcC----CCceEEEEecccCCcccccccccHHHHHHHhCCcee-EEec
Q 047623          190 NEAVLVTTPDITSLRDADRVTGL-------LECDG----IRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL-GVIP  257 (340)
Q Consensus       190 d~viiv~~~~~~s~~~~~~~~~~-------l~~~~----~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~-~~Ip  257 (340)
                      |.+|+|+.++..++..+..+.+.       ++..+    ...+++++|+++.+......  ....+.+.++..++ ..|+
T Consensus       258 d~viipv~p~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~--~~~~l~~~~~~~vl~~~I~  335 (387)
T TIGR03453       258 TGVLITVHPQMLDVMSMSQFLLMTGDLLGVVREAGGNLSYDFMRYLVTRYEPNDGPQAQ--MVAFLRSLFGDHVLTNPML  335 (387)
T ss_pred             CeeEEcCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEEeeECCCCccHHH--HHHHHHHHhcccccccccc
Confidence            99999999988888777655443       33322    34678999999876422222  24556777887777 6899


Q ss_pred             CChHHHHHHhcCCceEeeCCCCHHHHHHHHHH
Q 047623          258 EDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAA  289 (340)
Q Consensus       258 ~d~~~~~a~~~g~~v~~~~~~s~~~~~~~~la  289 (340)
                      ++..+.++...|.|++++.|++..++.|.+..
T Consensus       336 ~~~~~~~a~~~g~~V~e~~~~~~~~~~~~~a~  367 (387)
T TIGR03453       336 KSTAISDAGLTKQTLYEVERSQFTRSTYDRAM  367 (387)
T ss_pred             ccHHHHhhhhcCCCcEEECCCCCCHHHHHHHH
Confidence            99999999999999999998764444454443

Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.

>PHA02519 plasmid partition protein SopA; Reviewed

Probab=99.97  E-value=6.2e-30  Score=239.78  Aligned_cols=230  Identities=17%  Similarity=0.222  Sum_probs=168.5

Q ss_pred             CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEec-CCCCCCchhccCCcCC----CcccHHHhhcCCCccccc
Q 047623           47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDA-DVGLRNLDLLLGLENR----VNYTVVEVLNGDCRLDQA  121 (340)
Q Consensus        47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~-D~~~~~l~~~~~~~~~----~~~~l~~~l~~~~~~~~~  121 (340)
                      .+.+++|+|.|.||||||||+|+|||+.||++|+|||+||+ |+| ++++.+||..++    ...++.+++.+.......
T Consensus       103 ~~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlIDl~DpQ-~nlt~~~g~~~~~~~~~~~tl~~~~~~~~~~~~~  181 (387)
T PHA02519        103 DKNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIEGNDPQ-GTASMYHGYVPDLHIHADDTLLPFYLGERDNAEY  181 (387)
T ss_pred             CCCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEeCCCCC-CCcccccCcCccccccccccHHHHHhCCCcchHh
Confidence            45579999999999999999999999999999999999996 999 888888887542    234666776654432233


Q ss_pred             eecccccCceeEeecCCCCCCCCCCc---------chhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeE
Q 047623          122 LVRDKRWSNFELLCISKPRSKLPLGF---------GGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEA  192 (340)
Q Consensus       122 ~~~~~~~~~l~~l~~~~~~~~~~~~~---------~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~v  192 (340)
                      +...+.+++++++|++.........+         .......+.+.+.. +.++||||||||||+++..+.+++.+||.|
T Consensus       182 ~i~~t~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~L~~-l~~~YD~IlID~pPslg~lt~nAL~AAd~v  260 (387)
T PHA02519        182 AIKPTCWPGLDIIPSCLALHRIETDLMQYHDAGKLPHPPHLMLRAAIES-VWDNYDIIVIDSAPNLGTGTINVVCAADVI  260 (387)
T ss_pred             heecCCCCCEEEEECChHHHHHHHHHHHhhhccccccCHHHHHHHHHHH-hhccCCEEEEECCCCccHHHHHHHHHhCEE
Confidence            34445679999999976432211100         00111223333332 345899999999999999999999999999


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHh-------cC-CCceEEEEecccCCcccccccccHHHHHHHhCCcee-EEecCChHHH
Q 047623          193 VLVTTPDITSLRDADRVTGLLEC-------DG-IRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL-GVIPEDSEVI  263 (340)
Q Consensus       193 iiv~~~~~~s~~~~~~~~~~l~~-------~~-~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~-~~Ip~d~~~~  263 (340)
                      |+|+.++..++.++.++++.+..       .+ ...+.+++|+++++... ....-...+.+.+|..++ ..|+.+..+.
T Consensus       261 liPv~~~~~s~~s~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~~~~~-~~~~i~~~l~~~~g~~vl~~~I~~s~~i~  339 (387)
T PHA02519        261 VVATPAELFDYVSVLQFFTMLLDLLATVDLGGFEPVVRLLLTKYSLTVGN-QSRWMEEQIRNTWGSMVLRQVVRVTDEVG  339 (387)
T ss_pred             EEecCCcHHHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEeeECCCCch-HHHHHHHHHHHHhccccccccCcCcchHh
Confidence            99999999999888776655532       12 23567999999876311 111123567788887777 6799999999


Q ss_pred             HHHhcCCceEeeCCCC
Q 047623          264 RSTNRGYPLVLNKPPT  279 (340)
Q Consensus       264 ~a~~~g~~v~~~~~~s  279 (340)
                      ++...++++++..+.+
T Consensus       340 ~a~~~~~ti~e~~~~~  355 (387)
T PHA02519        340 KGQIKMRTVFEQAANQ  355 (387)
T ss_pred             hchhcCCChhhCcccc
Confidence            9999999999987655

>PRK13705 plasmid-partitioning protein SopA; Provisional

Probab=99.97  E-value=6.1e-30  Score=240.36  Aligned_cols=230  Identities=17%  Similarity=0.233  Sum_probs=167.4

Q ss_pred             CCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEec-CCCCCCchhccCCcCC----CcccHHHhhcCCCc-cc
Q 047623           46 AGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDA-DVGLRNLDLLLGLENR----VNYTVVEVLNGDCR-LD  119 (340)
Q Consensus        46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~-D~~~~~l~~~~~~~~~----~~~~l~~~l~~~~~-~~  119 (340)
                      .+.++++|+|.|.||||||||+|+|||..||++|+|||+||+ |+| ++++.++|..++    ...++.+++.+... ..
T Consensus       102 ~~~~~~vIai~n~KGGVGKTT~a~nLA~~LA~~G~rVLlID~~DpQ-~nlt~~~g~~~~~~~~~~~~l~~~~~~~~~~~~  180 (388)
T PRK13705        102 EDVFPPVIGVAAHKGGVYKTSVSVHLAQDLALKGLRVLLVEGNDPQ-GTASMYHGWVPDLHIHAEDTLLPFYLGEKDDAT  180 (388)
T ss_pred             CCCCCeEEEEECCCCCchHHHHHHHHHHHHHhcCCCeEEEcCCCCC-CchhhhcCcCccccccccccHHHHHhcCCCchh
Confidence            456689999999999999999999999999999999999996 999 888888887532    23456666654432 33


Q ss_pred             cceecccccCceeEeecCCCCCCCCCCc---------chhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCC
Q 047623          120 QALVRDKRWSNFELLCISKPRSKLPLGF---------GGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPAN  190 (340)
Q Consensus       120 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~---------~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad  190 (340)
                      .. ...+.+++++++|++.........+         .......+-+.+. .+.++||||||||||+++..+.+++.+||
T Consensus       181 ~~-i~~t~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~l~-~l~~~YD~IiIDtpP~l~~~t~nal~AaD  258 (388)
T PRK13705        181 YA-IKPTCWPGLDIIPSCLALHRIETELMGKFDEGKLPTDPHLMLRLAIE-TVAHDYDVIVIDSAPNLGIGTINVVCAAD  258 (388)
T ss_pred             hh-eecCCCCCEEEEeCCHHHHHHHHHHHHhhhcccccccHHHHHHHHHH-hhhccCCEEEEECCCchhHHHHHHHHHcC
Confidence            33 3344568999999875432211100         0001112222232 23458999999999999999999999999


Q ss_pred             eEEEEeCCChhhHHHHHHHHHHHHhc-------C-CCceEEEEecccCCcccccccccHHHHHHHhCCcee-EEecCChH
Q 047623          191 EAVLVTTPDITSLRDADRVTGLLECD-------G-IRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL-GVIPEDSE  261 (340)
Q Consensus       191 ~viiv~~~~~~s~~~~~~~~~~l~~~-------~-~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~-~~Ip~d~~  261 (340)
                      .+|+|+.++..++.++.++++.+...       + ...+.+++|+++++.... ...-...+.+.++..++ ..||++..
T Consensus       259 ~viiP~~~~~~s~~g~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~~~~~~-~~~~~~~l~~~~~~~vl~~~I~~s~~  337 (388)
T PRK13705        259 VLIVPTPAELFDYTSALQFFDMLRDLLKNVDLKGFEPDVRILLTKYSNSNGSQ-SPWMEEQIRDAWGSMVLKNVVRETDE  337 (388)
T ss_pred             EEEEecCCcHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEEEecCCCchH-HHHHHHHHHHHhccccccccCcccch
Confidence            99999999999999888777666531       1 235678999998753111 11123567778887777 68999999


Q ss_pred             HHHHHhcCCceEeeCCCC
Q 047623          262 VIRSTNRGYPLVLNKPPT  279 (340)
Q Consensus       262 ~~~a~~~g~~v~~~~~~s  279 (340)
                      +.++...+++++++.+.+
T Consensus       338 i~~a~~~~~ti~e~~~~~  355 (388)
T PRK13705        338 VGKGQIRMRTVFEQAIDQ  355 (388)
T ss_pred             HhhhhhcCCCceeEcccc
Confidence            999999999999987533

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=99.97  E-value=9.1e-30  Score=215.57  Aligned_cols=179  Identities=69%  Similarity=1.064  Sum_probs=149.5

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCce
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNF  131 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l  131 (340)
                      +|+|+|+|||+||||+|+|||..++++|++|++||+|++.+++..+++.+.....++.+++                   
T Consensus         1 ~i~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~~~~~~~~~~~~~~~~~~~~-------------------   61 (179)
T cd02036           1 VIVVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLILGLENRVVYTLHDVL-------------------   61 (179)
T ss_pred             CEEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCchhhccccccCCcchhhcc-------------------
Confidence            5899999999999999999999999999999999999987888777665432111111100                   


Q ss_pred             eEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHHHHHHH
Q 047623          132 ELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTG  211 (340)
Q Consensus       132 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~  211 (340)
                                                   .     -||||||+||+.+.....++..||.+++|+.++..++..+.++++
T Consensus        62 -----------------------------~-----~d~viiD~p~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~  107 (179)
T cd02036          62 -----------------------------A-----GDYILIDSPAGIERGFITAIAPADEALLVTTPEISSLRDADRVKG  107 (179)
T ss_pred             -----------------------------c-----CCEEEEECCCCCcHHHHHHHHhCCcEEEEeCCCcchHHHHHHHHH
Confidence                                         0     099999999999888888999999999999999999999999999


Q ss_pred             HHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCCCHHHHHH
Q 047623          212 LLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAF  285 (340)
Q Consensus       212 ~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~s~~~~~~  285 (340)
                      .++..+....++|+|+++++......  ..+++++.++.++++.||++..+.++..+|+++.++.|+++++++|
T Consensus       108 ~~~~~~~~~~~iv~N~~~~~~~~~~~--~~~~~~~~~~~~v~~~Ip~~~~~~~a~~~G~~v~~~~~~~~~~~~~  179 (179)
T cd02036         108 LLEALGIKVVGVIVNRVRPDMVEGGD--MVEDIEEILGVPLLGVIPEDPAVIRATNRGEPVVLNKPKSPAAQAY  179 (179)
T ss_pred             HHHHcCCceEEEEEeCCcccccchhh--HHHHHHHHhCCCEEEEecCCHHHHHHHhcCCceEecCCCChhhhcC
Confidence            99887778899999999876532222  1467788899999999999999999999999999999999877653

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>PHA02518 ParA-like protein; Provisional

Probab=99.97  E-value=1.2e-29  Score=220.54  Aligned_cols=203  Identities=16%  Similarity=0.189  Sum_probs=153.1

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCc
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSN  130 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  130 (340)
                      ++|+|.|.|||+||||+|+|||.+|+++|++|++||+|+| +++..+++......                         
T Consensus         1 ~ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q-~~~~~~~~~~~~~~-------------------------   54 (211)
T PHA02518          1 KIIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQ-GSSTDWAEAREEGE-------------------------   54 (211)
T ss_pred             CEEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC-CChHHHHHhcccCC-------------------------
Confidence            5899999999999999999999999999999999999999 55555543221100                         


Q ss_pred             eeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHHHHHH
Q 047623          131 FELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVT  210 (340)
Q Consensus       131 l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~  210 (340)
                       .+++...        . ...+...+..+.    ..||||||||||+.+.....++..||.||+|+.|+..++..+.++.
T Consensus        55 -~~i~~~~--------~-~~~~~~~l~~~~----~~~d~viiD~p~~~~~~~~~~l~~aD~viip~~ps~~~~~~~~~~~  120 (211)
T PHA02518         55 -PLIPVVR--------M-GKSIRADLPKVA----SGYDYVVVDGAPQDSELARAALRIADMVLIPVQPSPFDIWAAPDLV  120 (211)
T ss_pred             -CCCchhh--------c-cHHHHHHHHHHh----ccCCEEEEeCCCCccHHHHHHHHHCCEEEEEeCCChhhHHHHHHHH
Confidence             0111100        0 112333334443    3799999999999999999999999999999999999999998888


Q ss_pred             HHHHhc-----CCCceEEEEecccCCcccccccccHHHHHHHhCCceeEE-ecCChHHHHHHhcCCceEeeCCCCHHHHH
Q 047623          211 GLLECD-----GIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGV-IPEDSEVIRSTNRGYPLVLNKPPTLAGLA  284 (340)
Q Consensus       211 ~~l~~~-----~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~-Ip~d~~~~~a~~~g~~v~~~~~~s~~~~~  284 (340)
                      +.++..     +.+..+++.|++.+......   ...+..+.++.+++.. ++++..+.++...|+++.++.++++++++
T Consensus       121 ~~~~~~~~~~~~~~~~~iv~n~~~~~~~~~~---~~~~~l~~~~~~~~~~~i~~~~~~~~a~~~g~~v~~~~~~~~a~~~  197 (211)
T PHA02518        121 ELIKARQEVTDGLPKFAFIISRAIKNTQLYR---EARKALAGYGLPILRNGTTQRVAYADAAEAGGSVLELPEDDKAAEE  197 (211)
T ss_pred             HHHHHHHhhCCCCceEEEEEeccCCcchHHH---HHHHHHHHcCchhhhchhhhHHHHHHHHhcCCceEecCCCchHHHH
Confidence            877642     34567788898865432221   2333444457777755 55556788999999999999999999999


Q ss_pred             HHHHHHHHHhcc
Q 047623          285 FEQAAWRLVEQD  296 (340)
Q Consensus       285 ~~~la~~i~~~~  296 (340)
                      |.+++++++++.
T Consensus       198 ~~~l~~ei~~~~  209 (211)
T PHA02518        198 IIQLVKELFRGI  209 (211)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998765

>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase

Probab=99.96  E-value=7.1e-28  Score=209.65  Aligned_cols=199  Identities=25%  Similarity=0.353  Sum_probs=143.5

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhc-----CCCccccceecc
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLN-----GDCRLDQALVRD  125 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~-----~~~~~~~~~~~~  125 (340)
                      ++|+|+| ||||||||+++|||.+||++|+||++||+|+|......+++.+.  ..++.+++.     +...+++.+.+ 
T Consensus         1 ~~iav~g-KGGvGKTt~~~nLA~~la~~G~rvLliD~D~q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-   76 (212)
T cd02117           1 RQIAIYG-KGGIGKSTTSQNLSAALAEMGKKVLQVGCDPKADSTRLLLGGKA--PTTILELAAEDGHVEDLELEDVIFE-   76 (212)
T ss_pred             CEEEEEC-CCcCcHHHHHHHHHHHHHHCCCcEEEEeCCCCCCccccccCCCC--CCCHHHHHhhhCCcCCcChhHeeEe-
Confidence            4799996 99999999999999999999999999999999544445555443  367888776     34455554443 


Q ss_pred             cccCceeEeecCCCCCCCCCCcchh-hHHHHHHHHHHhccCCCCEEEEcCCCCCC-HHHHHHHh--cCCeEEEEeCCChh
Q 047623          126 KRWSNFELLCISKPRSKLPLGFGGK-ALTWVVEALKSRQEGSPDFILIDCPAGID-AGFITAIT--PANEAVLVTTPDIT  201 (340)
Q Consensus       126 ~~~~~l~~l~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~D~VIiD~~~~~~-~~~~~~l~--~ad~viiv~~~~~~  201 (340)
                       .+++++++|++............. ....+++.+.. +.++||||||||++... ......+.  .||.+++|++++..
T Consensus        77 -~~~~l~vlp~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~yD~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p~~~  154 (212)
T cd02117          77 -GFGGVKCVESGGPEPGVGCAGRGVITAVNLLEKEGF-AEDDLDVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGEFM  154 (212)
T ss_pred             -CCCCcEEEeCCCCCCCcccCCcchhhHHHHHHhccc-cccCCCEEEEecCCCceecccccccccccCcEEEEEecccHH
Confidence             458999999987664433211110 11122332222 35589999999976552 12223344  89999999999999


Q ss_pred             hHHHHHHHHHHHHhc----CCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCC
Q 047623          202 SLRDADRVTGLLECD----GIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPED  259 (340)
Q Consensus       202 s~~~~~~~~~~l~~~----~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d  259 (340)
                      ++.++.++.+.++..    +....++|+|+++.+.    .....+++++.++.++++.||+|
T Consensus       155 sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~~----~~~~~~~~~~~~~~~vl~~IP~d  212 (212)
T cd02117         155 ALYAANNICKGIRKYAKSGGVRLGGLICNSRNTDR----ETELIDAFAERLGTQVIHFVPRD  212 (212)
T ss_pred             HHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCcc----HHHHHHHHHHHcCCCEEEecCCC
Confidence            999999888888764    4456789999998762    22346788899999999999986

Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.

>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase

Probab=99.96  E-value=1.2e-27  Score=207.40  Aligned_cols=194  Identities=21%  Similarity=0.220  Sum_probs=150.3

Q ss_pred             CCCCCChhhHHHHHhhCCC----CCCCCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEecCCCCCCchhcc
Q 047623           24 LKPFSSKSSIQSVLQWNRK----PELAGETPRVVVITSGKGGVGKTTTTANVGLSLAR-LGFSVVAIDADVGLRNLDLLL   98 (340)
Q Consensus        24 ~~~~~~~~~~~~~l~~~~~----~~~~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~-~g~~VlliD~D~~~~~l~~~~   98 (340)
                      -.|.+...+-.+.++.+..    .....+.+++|+|+|+|||+||||+|+|||..|++ .|++|++||+|++.++++.++
T Consensus         5 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~~~~~~~~   84 (207)
T TIGR03018         5 NSPRSRIAEEFRKIKRPLLANAFSANRKKNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSLHRTL   84 (207)
T ss_pred             CCCCCHHHHHHHHHHHHHHHhccccccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCChhhhhee
Confidence            3455555554444444432    22355678999999999999999999999999997 699999999999988999999


Q ss_pred             CCcCCCcccHHHhhcCCC-ccccceecccccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCC--CEEEEcCC
Q 047623           99 GLENRVNYTVVEVLNGDC-RLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSP--DFILIDCP  175 (340)
Q Consensus        99 ~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--D~VIiD~~  175 (340)
                      +.+..  .++.+++.+.. .+++.+.+. ..++++++|++..............+..+++.+++    +|  ||||||+|
T Consensus        85 ~~~~~--~~l~~~l~~~~~~l~~~i~~~-~~~~l~vl~~g~~~~~~~~~~~~~~l~~~l~~l~~----~y~~D~IiiD~p  157 (207)
T TIGR03018        85 GLEAE--PGLSDCLLDPVLDLADVLVPT-NIGRLSLLPAGRRHPNPTELLASQRMRSLLHELAR----RYPDRIIIIDTP  157 (207)
T ss_pred             CCCCC--CCHHHHHcCCCCCHHHHhccC-CCCCEEEEeCCCCCCCHHHHhCcHHHHHHHHHHHh----hCCCCEEEEECC
Confidence            88764  67889887766 666655543 34789999988775443222344556677777766    57  99999999


Q ss_pred             CCCCH-HHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEe
Q 047623          176 AGIDA-GFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVN  226 (340)
Q Consensus       176 ~~~~~-~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN  226 (340)
                      |.... ....++..||.+|+|+.++..+.+.+.+.++.++  +.+.+|+|+|
T Consensus       158 p~~~~~~~~~l~~~aD~viiV~~~~~~~~~~~~~~~~~l~--~~~~~G~v~N  207 (207)
T TIGR03018       158 PLLVFSEARALARLVGQIVLVVEEGRTTQEAVKEALSALE--SCKVLGVVLN  207 (207)
T ss_pred             CCcchhHHHHHHHhCCEEEEEEECCCCCHHHHHHHHHHhc--CCCeEEEEeC
Confidence            98864 4445567899999999999999999999999998  5678999998

Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.

>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG

Probab=99.96  E-value=1.6e-27  Score=215.63  Aligned_cols=200  Identities=19%  Similarity=0.253  Sum_probs=163.4

Q ss_pred             CCCCCCCCChhhHHHHHhhCCCCCCCCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCC
Q 047623           21 IKPLKPFSSKSSIQSVLQWNRKPELAGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGL  100 (340)
Q Consensus        21 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~  100 (340)
                      ....+|.+...+..+.++.+.......+..++|+|+|+|||+||||+|+|||..+|+.|++|++||+|++.+.++.+++.
T Consensus        74 ~~~~~~~~~~~e~~~~l~~~l~~~~~~~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D~~~~~~~~~~~~  153 (274)
T TIGR03029        74 IAAYQPFSPQVEALRALRSQLMLRWFSEGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLRDPVQHRNFKL  153 (274)
T ss_pred             ccccCCCCHHHHHHHHHHHHhhhhccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCccHHHhcCC
Confidence            45567777777878888888776666788899999999999999999999999999999999999999998998988887


Q ss_pred             cCCCcccHHHhhcCCCccccceecccccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCC-
Q 047623          101 ENRVNYTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGID-  179 (340)
Q Consensus       101 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~-  179 (340)
                      +..  .++.+++.+....+ .+......++++++|++.........+....+..+++.+++    .|||||||+||... 
T Consensus       154 ~~~--~gl~~~l~~~~~~~-~i~~~~~~~~l~~lp~g~~~~~~~~~~~~~~~~~~l~~l~~----~yD~ViiD~pp~~~~  226 (274)
T TIGR03029       154 SEQ--RGLSDILAGRSDLE-VITHIPALENLSVLPAGAIPPNPQELLARPAFTDLLNKVMG----DYDVVIVDTPSAEHS  226 (274)
T ss_pred             CCC--CCHHHHhCCCCCHH-HeeecCCCCCEEEEeCcCCCCCHHHHhCcHHHHHHHHHHHh----cCCEEEEeCCCcccc
Confidence            654  78999998875443 33333345899999998765443323344566677777766    79999999999764 


Q ss_pred             HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEec
Q 047623          180 AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNR  227 (340)
Q Consensus       180 ~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~  227 (340)
                      .........+|.+++|+.++..+...+.+.++.++..+.+.+|+|+|+
T Consensus       227 ~d~~~~~~~~d~vilV~~~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~  274 (274)
T TIGR03029       227 SDAQIVATRARGTLIVSRVNETRLHELTSLKEHLSGVGVRVVGAVLNQ  274 (274)
T ss_pred             cHHHHHHHhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence            334445678999999999999999999999999999999999999995

The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).

>TIGR02016 BchX chlorophyllide reductase iron protein subunit X

Probab=99.95  E-value=2.3e-26  Score=209.07  Aligned_cols=234  Identities=24%  Similarity=0.316  Sum_probs=155.8

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCC------ccccceec
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDC------RLDQALVR  124 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~------~~~~~~~~  124 (340)
                      ++|+|. +|||+||||+|+|||..||++|+||++||+|++.++...+++...  ..++.+++.+..      .+++....
T Consensus         1 ~vIav~-gKGGvGKTT~a~nLA~~La~~g~rVLlID~Dpq~~~~~~l~g~~~--~~~l~dv~~~~~~~~~~~~~~~vi~~   77 (296)
T TIGR02016         1 RIIAIY-GKGGSGKSFTTTNLSHMMAEMGKRVLQLGCDPKHDSTSLLFGGIS--LPTIIEVATEKKLAGEEVKVGDVCFK   77 (296)
T ss_pred             CEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEEecCCCCccchhccCCC--CCCHHHHHHhhccccCCCCHHHheee
Confidence            589999 899999999999999999999999999999999777777766433  267888876432      23333322


Q ss_pred             ccccCceeEe--ecCCCCCCCCCCcchhhH---HHHHHHHHHhccCCCCEEEEcCCCCC---CHHHHHHHhcCCeEEEEe
Q 047623          125 DKRWSNFELL--CISKPRSKLPLGFGGKAL---TWVVEALKSRQEGSPDFILIDCPAGI---DAGFITAITPANEAVLVT  196 (340)
Q Consensus       125 ~~~~~~l~~l--~~~~~~~~~~~~~~~~~~---~~l~~~l~~~~~~~~D~VIiD~~~~~---~~~~~~~l~~ad~viiv~  196 (340)
                      . ..++....  ............+.....   ...++.+.. +.++||||||||++..   +.....++..||.+++|+
T Consensus        78 ~-~~~~~~~~~~~~e~~~~~~~~gc~~~~~~~~~~~l~~l~~-~~~~yD~IliD~~~~~~~~g~~~~~a~~~Ad~viVvt  155 (296)
T TIGR02016        78 T-TIMNGSGGVYGMELGGPEVGRGCGGRGIIHGFDLLEKLGF-HDWDFDFVLMDFLGDVVCGGFATPLARSLAEEVIVIG  155 (296)
T ss_pred             c-cccCcCCCcceeecCCCCcccccCcchhhHHHHHHHHhhh-hcccCCEEEEecCCCccccccccchhhhhCCeEEEEe
Confidence            1 11211100  000000000000111111   233333331 2247999999997654   122333456799999999


Q ss_pred             CCChhhHHHHHHHHHHHH---hcC--CCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCc
Q 047623          197 TPDITSLRDADRVTGLLE---CDG--IRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYP  271 (340)
Q Consensus       197 ~~~~~s~~~~~~~~~~l~---~~~--~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~  271 (340)
                      .++..++.++.++.+.++   +.+  .+.+++|+|++..+.       ..+++++.++.++++.||+++.+.++. .+.+
T Consensus       156 ~~e~~sl~~a~~l~k~v~~~~~~~~~v~i~GVV~N~~~~~~-------~~~~~~~~~~i~vLg~IP~d~~i~~~~-~~~~  227 (296)
T TIGR02016       156 SNDRQSLYVANNICNAVEYFRKLGGRVGLLGLVVNRDDGSG-------EAQAFAREVGIPVLAAIPADEELRRKS-LAYQ  227 (296)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHcCCCCcceEEEEeCCCCcc-------HHHHHHHHcCCCeEEECCCCHHHHHHh-cCCC
Confidence            999999987766666554   443  568999999986532       246778899999999999999998744 3334


Q ss_pred             eEeeCCCCHHHHHHHHHHHHHHhccc
Q 047623          272 LVLNKPPTLAGLAFEQAAWRLVEQDS  297 (340)
Q Consensus       272 v~~~~~~s~~~~~~~~la~~i~~~~~  297 (340)
                      .....+.+..++.|.+|+++|.++..
T Consensus       228 ~~~~~~~~~~~~~f~~la~~i~~~~~  253 (296)
T TIGR02016       228 IVGSHATPRFGKLFEELAGNVADAPP  253 (296)
T ss_pred             eeecCCCHHHHHHHHHHHHHHHHhcC
Confidence            44444455689999999999998754

This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.

>TIGR01007 eps_fam capsular exopolysaccharide family

Probab=99.95  E-value=3.8e-27  Score=203.95  Aligned_cols=179  Identities=23%  Similarity=0.312  Sum_probs=144.9

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccc
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKR  127 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  127 (340)
                      +.+|+|+|+|+|||+||||+|.|||..+++.|++|++||+|++.+.+..+++.+.. ..++.+++.+...+++.+... .
T Consensus        15 ~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~~~l~~~~~~~~~-~~~l~~~l~~~~~l~~~i~~~-~   92 (204)
T TIGR01007        15 AEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRNSVMSGTFKSQNK-ITGLTNFLSGTTDLSDAICDT-N   92 (204)
T ss_pred             CCCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCChhHHHHhCCCCC-CCCHHHHhcCCCCHHHhcccC-C
Confidence            44899999999999999999999999999999999999999998888888887652 368889998888777766543 2


Q ss_pred             cCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCH-HHHHHHhcCCeEEEEeCCChhhHHHH
Q 047623          128 WSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDA-GFITAITPANEAVLVTTPDITSLRDA  206 (340)
Q Consensus       128 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~-~~~~~l~~ad~viiv~~~~~~s~~~~  206 (340)
                      .++++++|++..............+..+++.+++    +|||||||+||.... ........+|.+++|+.++..+...+
T Consensus        93 ~~~l~~l~~g~~~~~~~~~l~~~~l~~~l~~l~~----~yD~ViiD~pp~~~~~~~~~~~~~~D~vilV~~~~~~~~~~~  168 (204)
T TIGR01007        93 IENLFVITSGPVPPNPTELLQSSNFKTLIETLRK----YFDYIIIDTPPIGTVTDAAIIARACDASILVTDAGEIKKRDV  168 (204)
T ss_pred             CCCEEEEeCCCCCCCHHHHhCcHHHHHHHHHHHh----cCCEEEEeCCCccccchHHHHHHhCCeEEEEEECCCCCHHHH
Confidence            3899999987754332222344556666776665    799999999994322 22334467999999999999999999


Q ss_pred             HHHHHHHHhcCCCceEEEEecccCCc
Q 047623          207 DRVTGLLECDGIRDIKMVVNRVRTDM  232 (340)
Q Consensus       207 ~~~~~~l~~~~~~~~~vviN~~~~~~  232 (340)
                      .+.++.+++.+.+.+++|+|+++...
T Consensus       169 ~~~~~~l~~~~~~~~gvVlN~~~~~~  194 (204)
T TIGR01007       169 QKAKEQLEQTGSNFLGVVLNKVDISV  194 (204)
T ss_pred             HHHHHHHHhCCCCEEEEEEeCccccc
Confidence            99999999989999999999998764

This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.

>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring

Probab=99.95  E-value=6.2e-26  Score=207.13  Aligned_cols=251  Identities=23%  Similarity=0.312  Sum_probs=173.8

Q ss_pred             CCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCC------Cccc
Q 047623           46 AGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGD------CRLD  119 (340)
Q Consensus        46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~------~~~~  119 (340)
                      ..+..++|+|+ +|||+||||+++|||.+|+++|++|++||+|++++++..+||....  .++.+.....      ..++
T Consensus        27 ~~~~~~ii~v~-gkgG~GKSt~a~nLa~~la~~g~rVllid~D~~~~~~~~~~g~~~~--~~i~d~~~~~~l~~~~~~~~  103 (329)
T cd02033          27 PTKKTQIIAIY-GKGGIGKSFTLANLSYMMAQQGKRVLLIGCDPKSDTTSLLFGGKAC--PTIIETSAKKKLAGEEVQIG  103 (329)
T ss_pred             CCCCCeEEEEE-CCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeecccccchhccccCC--CcccccccccccCcccceee
Confidence            44677999999 5999999999999999999999999999999998899999987654  2333332221      1112


Q ss_pred             cceecccccCceeEeecCCCCCCCCCCcchhh---HHHHHHHHHHhccCCCCEEEEcCCCCCC--H-HHHHHHhcCCeEE
Q 047623          120 QALVRDKRWSNFELLCISKPRSKLPLGFGGKA---LTWVVEALKSRQEGSPDFILIDCPAGID--A-GFITAITPANEAV  193 (340)
Q Consensus       120 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~---~~~l~~~l~~~~~~~~D~VIiD~~~~~~--~-~~~~~l~~ad~vi  193 (340)
                      +....   ..++.++..+.+...  ..+....   ...+++.+.. ..+.|||||||++++..  . ....+...+|.++
T Consensus       104 dv~~~---~~gv~~~~~g~p~~~--~G~~~~~~i~~~~~l~~l~~-~~w~~DyVliD~~gdv~~ggf~l~i~~~~ad~VI  177 (329)
T cd02033         104 DVCFK---RDGVFAMELGGPEVG--RGCGGRGIIHGFELLEKLGF-HDWDFDYVLLDFLGDVVCGGFGLPIARDMAQKVI  177 (329)
T ss_pred             ceEEE---eCCEEEecCCCCeec--ccccchHHHHHHHHHHHccC-ccccCCEEEEecCCcceeccccchhhhcCCceEE
Confidence            22221   146666533322211  1122211   1234444322 23479999999988653  1 1222334589999


Q ss_pred             EEeCCChhhHHHH---HHHHHHHHhcC--CCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhc
Q 047623          194 LVTTPDITSLRDA---DRVTGLLECDG--IRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNR  268 (340)
Q Consensus       194 iv~~~~~~s~~~~---~~~~~~l~~~~--~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~  268 (340)
                      +|++++..++..+   .+.++.++..+  ...+++|+||+....       ..+++++.++.++++.||+|+.+.++..+
T Consensus       178 VVt~pe~~si~~A~~v~kai~~~~~lg~~~~i~GlViNr~d~~~-------~ie~~ae~lgi~vLg~IP~D~~V~~a~~~  250 (329)
T cd02033         178 VVGSNDLQSLYVANNVCNAVEYFRKLGGNVGVAGMVINKDDGTG-------EAQAFAAHAGIPILAAIPADEELRRKSAA  250 (329)
T ss_pred             EeCCchHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCcCCcc-------hHHHHHHHhCCCEEEECCCCHHHHHHHHc
Confidence            9999999999664   45556666553  567999999987532       26688899999999999999999999999


Q ss_pred             CCceEeeCCCCHHHHHHHHHHHHHHhccccchhhhccCccccchhhhhcc
Q 047623          269 GYPLVLNKPPTLAGLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFSFFGL  318 (340)
Q Consensus       269 g~~v~~~~~~s~~~~~~~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (340)
                      |.++  .+|.++.++.|.+||++|.+....    .+..-....|++.|..
T Consensus       251 g~~~--~~p~s~~a~~f~~LA~~I~~~~~~----~~~~~~~~~~~~~~~~  294 (329)
T cd02033         251 YQIV--GRPGTTWGPLFEQLATNVAEAPPM----RPKPLSQDELLGLFSS  294 (329)
T ss_pred             CCee--cCCCCHHHHHHHHHHHHHHHhcCC----CCCCCCHHHHHHHhhc
Confidence            9853  567889999999999999986642    1233444566666654

This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.

>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]

Probab=99.95  E-value=3.3e-26  Score=207.03  Aligned_cols=241  Identities=27%  Similarity=0.321  Sum_probs=207.3

Q ss_pred             CCCCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccce
Q 047623           44 ELAGETPRVVVITSGKGGVGKTTTTANVGLSLARL-GFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQAL  122 (340)
Q Consensus        44 ~~~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~-g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~  122 (340)
                      ......+++++|.|.|||+|.||+|.|+|+.++.. +..|+++|+|.++++...+|+.++.  +++.++..+..++++..
T Consensus        98 ~s~~~~~r~iafl~akgg~g~stlA~n~a~~l~~~~~~~v~L~DL~~~~G~~~~~l~~~~a--~~i~~~~~~peRLDq~l  175 (366)
T COG4963          98 ISIAQQGRELAFLGAKGGVGTSTLAHNLAKGLAILSGAAVLLVDLDLQGGTAALYLDQDPA--FGIAEAVKQPERLDQVL  175 (366)
T ss_pred             chhhhhceEEEEEeecCCcchHHHHHHHHHHHhhhcCCcEEEEEcCCCCcchhhhcCCCch--hhHHHHhcCHHHhhHHH
Confidence            34566779999999999999999999999999976 9999999999999988899988765  88999998888777655


Q ss_pred             ecc---cccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCC
Q 047623          123 VRD---KRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPD  199 (340)
Q Consensus       123 ~~~---~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~  199 (340)
                      ...   ..-+++.+++....... ..++....+..+++.++.    .||+||+|.|..+.+++...+.+||.|+++++++
T Consensus       176 ld~~~~~~~~~l~ll~a~~~~~~-~~d~~~~~~~~Ll~~~~~----~~~~vV~Dlp~~~~~~t~~vL~~Sd~iviv~e~s  250 (366)
T COG4963         176 LDSLLTRLASGLKLLAAPTELAK-NYDLKTGAVERLLDLLRG----SFDFVVVDLPNIWTDWTRQVLSGSDEIVIVAEPS  250 (366)
T ss_pred             HHHHHhccCCCceeecCCcchhh-hcccccchHHHHHHHhhc----cCCeEEEcCCCccchHHHHHHhcCCeEEEEeccc
Confidence            432   22378888877666443 334667777888888877    7999999999888999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHhcCC--CceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChH-HHHHHhcCCceEeeC
Q 047623          200 ITSLRDADRVTGLLECDGI--RDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSE-VIRSTNRGYPLVLNK  276 (340)
Q Consensus       200 ~~s~~~~~~~~~~l~~~~~--~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~-~~~a~~~g~~v~~~~  276 (340)
                      ..+++.++++++.+++.+.  .+..+|+|++......     +.+++.+.+|++.+..+|.|+. +..+.++|+++.+.+
T Consensus       251 l~slR~ak~lld~l~~~r~~~~~p~lv~n~~~~~~~~-----~~~dl~~~~~i~~~~~~p~d~~~~~~A~n~g~~l~E~~  325 (366)
T COG4963         251 LASLRNAKELLDELKRLRPNDPKPILVLNRVGVPKRP-----EPSDLEEILGIESLLVLPFDPALFGDAANNGRMLSEVD  325 (366)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCCceEEeeecCCCCCC-----CHHHHHHHhCCchhccccCCchhhhhhhccCccccccC
Confidence            9999999999999997544  6899999999987522     2678999999999999999999 569999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHhcc
Q 047623          277 PPTLAGLAFEQAAWRLVEQD  296 (340)
Q Consensus       277 ~~s~~~~~~~~la~~i~~~~  296 (340)
                      |++++++++.++++.+....
T Consensus       326 ~~~~~~k~l~~la~~l~~~~  345 (366)
T COG4963         326 PGSPAAKALAQLAQSLGGRI  345 (366)
T ss_pred             CCChHHHHHHHHHHHhcCcc
Confidence            99999999999999999874

>PRK11519 tyrosine kinase; Provisional

Probab=99.95  E-value=1.6e-26  Score=233.83  Aligned_cols=220  Identities=17%  Similarity=0.166  Sum_probs=180.4

Q ss_pred             CCCCccccccCCCCC-------------------CCCCCCCCCChhhHHHHHhhCCCCCCCCCCCEEEEEEcCCCCCcHH
Q 047623            5 IPSPTIQFKPLFPSK-------------------TIKPLKPFSSKSSIQSVLQWNRKPELAGETPRVVVITSGKGGVGKT   65 (340)
Q Consensus         5 ~~~p~~g~~p~~~~~-------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~iI~v~s~kGGvGKT   65 (340)
                      ++.|+||.||..+..                   ......|.+...+..+.++.++.........++|+|+|++||+|||
T Consensus       462 ~g~pvlg~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~~Ea~r~lrt~l~~~~~~~~~kvi~vts~~~geGKT  541 (719)
T PRK11519        462 HGISVYASIPLSEWQKARDSVKTIKGIKRYKQSQLLAVGNPTDLAIEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGKT  541 (719)
T ss_pred             cCCCeEEEEecchhhhhhccchhcccccccCcccceeecCCCCHHHHHHHHHHHHhhhhccCCCceEEEEECCCCCCCHH
Confidence            478999999976311                   1122356666677788888887766666778999999999999999


Q ss_pred             HHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCceeEeecCCCCCCCCC
Q 047623           66 TTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPL  145 (340)
Q Consensus        66 t~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~  145 (340)
                      |+|.|||..+|+.|+||++||+|++.++++.+|+..+.  .++.+++.+...+++.+.... .++++++|++........
T Consensus       542 t~a~nLA~~la~~g~rvLlID~Dlr~~~~~~~~~~~~~--~gl~~~l~~~~~l~~~i~~~~-~~~l~~lp~g~~~~~~~e  618 (719)
T PRK11519        542 FVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNV--NGLSDILIGQGDITTAAKPTS-IANFDLIPRGQVPPNPSE  618 (719)
T ss_pred             HHHHHHHHHHHhCCCcEEEEeCCCCCCcHHHHhCCCCC--CCHHHHhCCCCCHHHhecccC-cCCEEEEeCCCCCCCHHH
Confidence            99999999999999999999999999999999988754  689999999888887776543 489999998876544444


Q ss_pred             CcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHH-HHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEE
Q 047623          146 GFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGF-ITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMV  224 (340)
Q Consensus       146 ~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~-~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vv  224 (340)
                      .+....+..+++.+++    +||+|||||||...... ..+..++|.+++|+.++......+...++.+++.+.+..|+|
T Consensus       619 ll~s~~~~~ll~~l~~----~yD~ViiDtpP~~~v~Da~~l~~~~d~~l~Vvr~~~t~~~~~~~~~~~l~~~~~~~~G~V  694 (719)
T PRK11519        619 LLMSERFAELVNWASK----NYDLVLIDTPPILAVTDAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVI  694 (719)
T ss_pred             HhhHHHHHHHHHHHHh----cCCEEEEeCCCcccchHHHHHHHHCCeEEEEEeCCCCCHHHHHHHHHHHHhCCCCeEEEE
Confidence            4556677777877776    79999999999764333 334477999999999999999999999999999999999999


Q ss_pred             EecccCC
Q 047623          225 VNRVRTD  231 (340)
Q Consensus       225 iN~~~~~  231 (340)
                      +|+++..
T Consensus       695 lN~v~~~  701 (719)
T PRK11519        695 LNSIFRR  701 (719)
T ss_pred             EeCCccC
Confidence            9999654

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=99.95  E-value=7.5e-27  Score=238.61  Aligned_cols=200  Identities=17%  Similarity=0.058  Sum_probs=162.7

Q ss_pred             CCCChhhHHHHHhhCCCCCCCCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCc
Q 047623           26 PFSSKSSIQSVLQWNRKPELAGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVN  105 (340)
Q Consensus        26 ~~~~~~~~~~~l~~~~~~~~~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~  105 (340)
                      |.+...+-.+.++.+.......+..++|+|+|+|||+||||+|+|||..+|+.|++|++||+|++.++++.+|+..+.  
T Consensus       522 p~s~~~Ea~r~lr~~l~~~~~~~~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~~~~~l~~~~~~~~~--  599 (754)
T TIGR01005       522 PRPVAEEELRVKEEAVAEAKSVAEPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADGRKAALSQILVAREV--  599 (754)
T ss_pred             CCCcchHHHHHHHHHHhhhccCCCceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCCCchhHHHHhCCccc--
Confidence            444556666666666655556678899999999999999999999999999999999999999998999999998754  


Q ss_pred             ccHHHhhcCCCccccceecccccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHH
Q 047623          106 YTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITA  185 (340)
Q Consensus       106 ~~l~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~  185 (340)
                      .++.+++.+...+++.+.+. ..++++++|++.........+....+..+++.+++    +||||||||||........+
T Consensus       600 ~gl~~~l~~~~~~~~~i~~~-~~~~l~~l~~g~~~~~~~~ll~~~~~~~~l~~l~~----~yD~IiID~pp~~~~~d~~~  674 (754)
T TIGR01005       600 SGLLDLLAGLRSLLLDLTAS-GAASLPMLDSGLFPHGITELLASPAMFSLVIHARL----YSDCVVVDVGTADPVRDMRA  674 (754)
T ss_pred             CChHHHHcCCccHHHHhccC-CCCCeeEecCCCCCCCHHHHhccHHHHHHHHHHHh----hCCEEEEcCCCcchhHHHHH
Confidence            68889999888877766554 35899999998643332222445556667777766    79999999999887555555


Q ss_pred             H-hcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCc
Q 047623          186 I-TPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDM  232 (340)
Q Consensus       186 l-~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~  232 (340)
                      + ..+|.+++|+.++..+...+.+.++.++..+.+..|+|+|+++++.
T Consensus       675 l~~~~D~vl~v~~~~~~~~~~~~~~~~~l~~~~~~~~GvvlN~~~~~~  722 (754)
T TIGR01005       675 AARLAIIMLLVTAYDRVVVECGRADAQGISRLNGEVTGVFLNMLDPND  722 (754)
T ss_pred             hhhhCCeEEEEEEeCceeHHHHHHHHHHHHhcCCceEEEEecCCChhh
Confidence            4 5699999999999999999999999999888888999999998754

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional

Probab=99.94  E-value=4.3e-26  Score=230.85  Aligned_cols=221  Identities=15%  Similarity=0.141  Sum_probs=179.7

Q ss_pred             CCCCccccccCCCCC------------------------CCCCCCCCCChhhHHHHHhhCCCCCCCCCCCEEEEEEcCCC
Q 047623            5 IPSPTIQFKPLFPSK------------------------TIKPLKPFSSKSSIQSVLQWNRKPELAGETPRVVVITSGKG   60 (340)
Q Consensus         5 ~~~p~~g~~p~~~~~------------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~iI~v~s~kG   60 (340)
                      ++.|+||.||..+..                        ......|.+...+..+.++.++......+..++|+|+|.+|
T Consensus       462 ~g~pvlg~IP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~~Ea~r~lrt~l~~~~~~~~~kvI~vtS~~~  541 (726)
T PRK09841        462 HGISVYATIPMSEWLDKRTRLRKKNLFSNQQRHRTKNIPFLAVDNPADSAVEAVRALRTSLHFAMMETENNILMITGATP  541 (726)
T ss_pred             cCCCeEEEecCchhhhhhhhhhhccccccccccccccccceeecCCCCHHHHHHHHHHHHhhhhccCCCCeEEEEecCCC
Confidence            478999999985310                        01223566667777888888877666677889999999999


Q ss_pred             CCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCceeEeecCCCC
Q 047623           61 GVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPR  140 (340)
Q Consensus        61 GvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~  140 (340)
                      |+||||+|.|||..+|+.|+||++||+|++.+.++.+|+..+.  .++.+++.+...+++.+.+.. .++++++|++...
T Consensus       542 g~GKTtva~nLA~~la~~G~rVLlID~D~r~~~l~~~~~~~~~--~gl~~~l~~~~~~~~~i~~~~-~~~l~vl~~g~~~  618 (726)
T PRK09841        542 DSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNE--HGLSEYLAGKDELNKVIQHFG-KGGFDVITRGQVP  618 (726)
T ss_pred             CCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCcHHHHcCCCCC--CCHHHHhCCCCCHHHheeccC-CCCEEEEeCCCCC
Confidence            9999999999999999999999999999999999999987754  789999999888887776654 3799999988755


Q ss_pred             CCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHH-HHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCC
Q 047623          141 SKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAG-FITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIR  219 (340)
Q Consensus       141 ~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~-~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~  219 (340)
                      ......+....+..+++.+++    +||+|||||||..... .......+|.+++|+.++..+...+.+.++.+...+..
T Consensus       619 ~~p~ell~~~~~~~ll~~l~~----~yD~IIIDtPP~~~~~Da~~la~~ad~~llVvr~~~t~~~~~~~~~~~l~~~~~~  694 (726)
T PRK09841        619 PNPSELLMRDRMRQLLEWAND----HYDLVIVDTPPMLAVSDAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVN  694 (726)
T ss_pred             CCHHHHhCcHHHHHHHHHHHh----cCCEEEEeCCCccccchHHHHHHhCCeEEEEEeCCCCCHHHHHHHHHHHHhCCCc
Confidence            443333455667777877776    7999999999977442 33334679999999999999999999999999988889


Q ss_pred             ceEEEEecccCCc
Q 047623          220 DIKMVVNRVRTDM  232 (340)
Q Consensus       220 ~~~vviN~~~~~~  232 (340)
                      ..|+|+|+++.+.
T Consensus       695 ~~G~VlN~~~~~~  707 (726)
T PRK09841        695 IKGAILNGVIKRA  707 (726)
T ss_pred             eEEEEEeCcccCc
Confidence            9999999997653

>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily

Probab=99.94  E-value=8.6e-26  Score=189.63  Aligned_cols=161  Identities=31%  Similarity=0.438  Sum_probs=125.1

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCce
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNF  131 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l  131 (340)
                      +|+|+|+|||+||||+|+|||.++|+.|++|++||+|+|.+++.+++.              +              +  
T Consensus         1 vi~v~s~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~~~--------------~--------------~--   50 (169)
T cd02037           1 VIAVMSGKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKMWR--------------G--------------P--   50 (169)
T ss_pred             CEEEecCCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHHHh--------------C--------------c--
Confidence            589999999999999999999999999999999999999655443210              0              0  


Q ss_pred             eEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHH--hcCCeEEEEeCCChhhHHHHHHH
Q 047623          132 ELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAI--TPANEAVLVTTPDITSLRDADRV  209 (340)
Q Consensus       132 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l--~~ad~viiv~~~~~~s~~~~~~~  209 (340)
                                     .....+..+++.+.   .++||+||||+||+.+......+  ..+|.+++|++++..++..+.++
T Consensus        51 ---------------~~~~~l~~~~~~~~---~~~yD~VIiD~pp~~~~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~  112 (169)
T cd02037          51 ---------------MKMGAIKQFLTDVD---WGELDYLVIDMPPGTGDEHLTLAQSLPIDGAVIVTTPQEVALDDVRKA  112 (169)
T ss_pred             ---------------chHHHHHHHHHHhh---cCCCCEEEEeCCCCCcHHHHHHHhccCCCeEEEEECCchhhHHHHHHH
Confidence                           00112222333222   24799999999999877666555  58999999999999999999999


Q ss_pred             HHHHHhcCCCceEEEEecccCCcc--cc--c--ccccHHHHHHHhCCceeEEecCCh
Q 047623          210 TGLLECDGIRDIKMVVNRVRTDMI--KG--E--DMMSVLDIQEMLGLALLGVIPEDS  260 (340)
Q Consensus       210 ~~~l~~~~~~~~~vviN~~~~~~~--~~--~--~~~~~~~i~~~~g~~v~~~Ip~d~  260 (340)
                      ++.+++.+.+..++|+|++.....  .+  +  .....+++.+.++.++++.||+++
T Consensus       113 ~~~l~~~~~~~~gvv~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~~  169 (169)
T cd02037         113 IDMFKKVNIPILGVVENMSYFVCPHCGKKIYIFGKGGGEKLAEELGVPLLGKIPLDP  169 (169)
T ss_pred             HHHHHhcCCCeEEEEEcCCcccCCCCCCcccccCCccHHHHHHHcCCCEEEeccCCC
Confidence            999999999999999999875311  00  1  113577889999999999999975

Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=99.94  E-value=1.7e-25  Score=189.01  Aligned_cols=230  Identities=30%  Similarity=0.359  Sum_probs=172.2

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEecCCCCCCchhccCCcCCCc--ccHHHhhc---------------
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARL-GFSVVAIDADVGLRNLDLLLGLENRVN--YTVVEVLN---------------  113 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~-g~~VlliD~D~~~~~l~~~~~~~~~~~--~~l~~~l~---------------  113 (340)
                      .|+|+ +|||+||||+|+.||..+..+ |++|+.||+|+. .+++..+|.+.+..  -+..+++.               
T Consensus         2 kIaI~-GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd-~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~~f   79 (255)
T COG3640           2 KIAIT-GKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPD-SNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGEMF   79 (255)
T ss_pred             eEEEe-cCCCccHHHHHHHHHHHHHhcCCceEEEEeCCCC-CChHHhcCCCCCCcccccHHHHHHHHhccCCCCCccccc
Confidence            46776 999999999999988887776 599999999995 99999999986421  11112221               


Q ss_pred             -CCCccccceecc-cccCceeEeecCCCCCCC--CCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcC
Q 047623          114 -GDCRLDQALVRD-KRWSNFELLCISKPRSKL--PLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPA  189 (340)
Q Consensus       114 -~~~~~~~~~~~~-~~~~~l~~l~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~a  189 (340)
                       .....++..... ...++++++..+......  .........+.+++.+..   ++||+||+||-+++..+-+-....+
T Consensus        80 k~~~~~~di~~e~~~e~~~~~LLvmGkie~~GeGC~Cp~~allR~~l~~l~~---~~~e~VivDtEAGiEHfgRg~~~~v  156 (255)
T COG3640          80 KENPLVSDLPDEYLVENGDIDLLVMGKIEEGGEGCACPMNALLRRLLRHLIL---NRYEVVIVDTEAGIEHFGRGTIEGV  156 (255)
T ss_pred             ccCcchhhhhHHHhhhcCCccEEEeccccCCCCcccchHHHHHHHHHHHHhc---ccCcEEEEecccchhhhccccccCC
Confidence             111111111010 123567777666655222  221222334555555544   4699999999999999889999999


Q ss_pred             CeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcC
Q 047623          190 NEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRG  269 (340)
Q Consensus       190 d~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g  269 (340)
                      |.+|+|++|+..++..+.++.+..++.+++++.+|+|+++...      ..+.......+.++++.||+|+.+.++-..|
T Consensus       157 D~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~e------~~~~~~~~~~~~~vlg~iP~d~~v~~~dl~G  230 (255)
T COG3640         157 DLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEEE------ELLRELAEELGLEVLGVIPYDPEVVEADLKG  230 (255)
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccchh------HHHHhhhhccCCeEEEEccCCHHHHhccccC
Confidence            9999999999999999999999999999999999999998752      2245666778999999999999999999999


Q ss_pred             CceEeeCCCCHHHHHHHHHHHHHHhc
Q 047623          270 YPLVLNKPPTLAGLAFEQAAWRLVEQ  295 (340)
Q Consensus       270 ~~v~~~~~~s~~~~~~~~la~~i~~~  295 (340)
                      .|+....   ...+++.++++.|...
T Consensus       231 ~pl~~~~---~v~~~i~~I~~~l~~~  253 (255)
T COG3640         231 EPLNEEP---EVLKEIEEIAERLIKL  253 (255)
T ss_pred             Cccccch---hhhHHHHHHHHHHHhc
Confidence            9997753   6788999999887653

>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=99.94  E-value=3.8e-25  Score=197.55  Aligned_cols=231  Identities=30%  Similarity=0.366  Sum_probs=172.3

Q ss_pred             CCCCChhhHHHHHhhCCCCCCCC--CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcC
Q 047623           25 KPFSSKSSIQSVLQWNRKPELAG--ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLEN  102 (340)
Q Consensus        25 ~~~~~~~~~~~~l~~~~~~~~~~--~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~  102 (340)
                      .|.....+..+......+.....  ...++|+|+|+|||+||||+|+|||..+|+.|+||+++|+|..++++..+|+.++
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps~~~~l~~~~  109 (265)
T COG0489          30 LPKSTASEALRALRTNLKFAKVLRKGVKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSIPRMLGLEN  109 (265)
T ss_pred             CCcchhhhhhhhhhcchhhhhccccccceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCCCCchHHHhCCCC
Confidence            45554555455444433333333  3789999999999999999999999999999999999999999999999999976


Q ss_pred             CCcccHHHhhcCCCccccceecccccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHH
Q 047623          103 RVNYTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGF  182 (340)
Q Consensus       103 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~  182 (340)
                      ..  ++.+.+.+.. +.+...+. ...++++++...........+....+.+++.....   ..|||||||+||+.....
T Consensus       110 ~~--g~~~~~~g~~-~~~~~~~~-~~~~lsi~~~~~~p~~~r~~l~s~~~~qll~~~~~---~~~D~vIID~PP~~g~~d  182 (265)
T COG0489         110 LP--GLTELLAGEA-LEPVIQHD-GIKVLSILPLGPVPVIPRGLLGSKAMLQLLEDVLW---GEYDYVIIDTPPGTGDAD  182 (265)
T ss_pred             CC--CcccccCCCc-cccceecC-ccceEEEEecCCCCCCChHhhhhHHHHHHHHHHhc---cCCCEEEEeCCCCchHHH
Confidence            42  5667777766 55554443 24788888777733333333455556666666554   359999999999998777


Q ss_pred             HHHHh-cCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChH
Q 047623          183 ITAIT-PANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSE  261 (340)
Q Consensus       183 ~~~l~-~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~  261 (340)
                      ...+. .+|.+++|++|+......+++.++.++..+.+.+|+|.|+........- .-.-+...+.++ ++++.+|.+..
T Consensus       183 ~~i~~~~~~g~viVt~p~~~~~~~v~ka~~~~~~~~~~vlGvv~Nm~~~~~~~~~-~g~~~~~~~~~~-~~~g~~p~~~~  260 (265)
T COG0489         183 ATVLQRIPDGVVIVTTPGKTALEDVKKAIDMLEKAGIPVLGVVENMSYFICPRCG-EGGGEKYAERYG-PYLGSIPLDPS  260 (265)
T ss_pred             HHHHhccCCeEEEEeCCccchHHHHHHHHHHHHhcCCceEEEEecCccCcccccC-CCchhhHHHHhc-cccccCCCChh
Confidence            77664 5889999999999999999999999999999999999997665432110 113445666777 88889998877


Q ss_pred             HHH
Q 047623          262 VIR  264 (340)
Q Consensus       262 ~~~  264 (340)
                      ..+
T Consensus       261 ~~~  263 (265)
T COG0489         261 ARE  263 (265)
T ss_pred             hhh
Confidence            543

>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family

Probab=99.94  E-value=1e-24  Score=188.94  Aligned_cols=254  Identities=24%  Similarity=0.344  Sum_probs=175.1

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCc-----cccceecc
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCR-----LDQALVRD  125 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~-----~~~~~~~~  125 (340)
                      |.|+|. +|||+||||++.||+.+||++|+||++|-|||...+...+++-+..  .++.|.+.....     +++.+.  
T Consensus         1 r~IAiY-GKGGIGKST~~~Nlsaala~~G~kVl~iGCDPK~DST~~ll~g~~~--~Tvld~~~~~~~~e~~~ledvv~--   75 (273)
T PF00142_consen    1 RKIAIY-GKGGIGKSTTASNLSAALAEMGKKVLQIGCDPKADSTRLLLGGKAI--PTVLDLLREKGSVEDLELEDVVK--   75 (273)
T ss_dssp             EEEEEE-ESTTSSHHHHHHHHHHHHHHTT--EEEEEESSSSTSSCHHHTTSS---SBHHHHHHHHCTGGGS-HHHHSE--
T ss_pred             CeEEEE-cCCCcccChhhhHHHHHHHhccceeeEecccCCCccceeccCCccc--hhHHHHHhhccccccCCCCcEEE--
Confidence            468888 8999999999999999999999999999999996666666765543  677787764433     223332  


Q ss_pred             cccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHh--ccCCCCEEEEcCCCCC-CHHHHHHHh--cCCeEEEEeCCCh
Q 047623          126 KRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSR--QEGSPDFILIDCPAGI-DAGFITAIT--PANEAVLVTTPDI  200 (340)
Q Consensus       126 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~D~VIiD~~~~~-~~~~~~~l~--~ad~viiv~~~~~  200 (340)
                      +++.++..+.++.+.+  ...+....+...++.|.+.  ...+||+|+.|.-+.+ --.+...+.  .||.+++|+..+.
T Consensus        76 ~G~~gi~CvEsGGPeP--GvGCaGRGI~~a~~~L~~~~~~~~~~D~v~yDVLGDVVCGGFamPir~g~a~evyIVtSge~  153 (273)
T PF00142_consen   76 EGFKGILCVESGGPEP--GVGCAGRGIITALELLEELGAYEDDYDFVLYDVLGDVVCGGFAMPIREGYAQEVYIVTSGEF  153 (273)
T ss_dssp             EEGGGEEEEE---SCT--TSSBHHHHHHHHHHHHHHTTTSTSTSSEEEEEEESSSSCTTTTHHHHTTS-SEEEEEEBSSH
T ss_pred             eccCCceeeccCCCcc--cccccccchhhhhhhHHhhhhhhcCCceEEEEEEeeeEEeeeehhhhhccCCEEEEEecCcH
Confidence            2446777775555432  2335566666666666654  2456999999998865 222233343  6999999999999


Q ss_pred             hhHHHHHHHHHHHHhc----CCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeC
Q 047623          201 TSLRDADRVTGLLECD----GIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNK  276 (340)
Q Consensus       201 ~s~~~~~~~~~~l~~~----~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~  276 (340)
                      +++.++..+...+...    +.+..|+|.|+-+...    .....+++.+..|.++++.||++..+.++...++++.+..
T Consensus       154 mslyAANNI~~~i~~~~~~g~~~l~GiI~N~r~~~~----e~~~v~~fa~~~g~~i~~~iPr~~~v~~ae~~~~TVie~~  229 (273)
T PF00142_consen  154 MSLYAANNICKAIKNFADRGGARLGGIICNSRNVDD----EEEIVEDFAERIGTPIIAFIPRSEIVQRAELYGKTVIEAA  229 (273)
T ss_dssp             HHHHHHHHHHHHHHHHCTTSS-EEEEEEEE-SSSTT----HHHHHHHHHHHHTSEEEEEE---HHHHHHHHCTS-CCCC-
T ss_pred             HHHHHHHHHHHHHHHHhccCCCceEEEEecCCCCCC----chHHHHHHHHHcCCcEEEecCchHHHHHHHHcCCEEEEeC
Confidence            9999999999888754    2356779999554322    2234778999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHhccccchhhhccCccccchhhhhcc
Q 047623          277 PPTLAGLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFSFFGL  318 (340)
Q Consensus       277 ~~s~~~~~~~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (340)
                      |.|+.++.|++||++|++.....   .+.+-+...+++++.+
T Consensus       230 P~s~~a~~yr~LA~~I~~~~~~~---~P~PL~~eeL~~l~~~  268 (273)
T PF00142_consen  230 PDSEQAQEYRELARKILENPEPV---IPKPLSDEELEELLLS  268 (273)
T ss_dssp             TTSHHHHHHHHHHHHHHH----B---------HHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHhCCCCC---CCCCCCHHHHHHHHHH
Confidence            99999999999999999987544   2344555666666654

Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....

>PRK13849 putative crown gall tumor protein VirC1; Provisional

Probab=99.93  E-value=1e-24  Score=191.16  Aligned_cols=191  Identities=19%  Similarity=0.137  Sum_probs=131.7

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWS  129 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  129 (340)
                      |++|+|.|.|||+||||+|+|||..|+++|++|++||+|+| +++..+++.....  +                   .++
T Consensus         1 M~iI~v~n~KGGvGKTT~a~nLA~~la~~G~~VlliD~DpQ-~s~~~w~~~~~~~--~-------------------~~~   58 (231)
T PRK13849          1 MKLLTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADEN-RPLTRWKENALRS--N-------------------TWD   58 (231)
T ss_pred             CeEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCC-CCHHHHHHhhccc--c-------------------CCC
Confidence            58999999999999999999999999999999999999999 7766665322110  0                   001


Q ss_pred             ceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHHHHH
Q 047623          130 NFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRV  209 (340)
Q Consensus       130 ~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~  209 (340)
                      ......         .......+...++.+.   .+.||||||||||+.+.....++..||.||+|+.|+..++..+.++
T Consensus        59 ~~~~~~---------~~~~~~~l~~~l~~~~---~~~yD~iiID~pp~~~~~~~~al~~aD~vliP~~ps~~d~~~~~~~  126 (231)
T PRK13849         59 PACEVY---------AADELPLLEAAYEDAE---LQGFDYALADTHGGSSELNNTIIASSNLLLIPTMLTPLDIDEALST  126 (231)
T ss_pred             ccceec---------CCCHHHHHHHHHHHHh---hCCCCEEEEeCCCCccHHHHHHHHHCCEEEEeccCcHHHHHHHHHH
Confidence            000000         0001112223333332   2479999999999999999999999999999999999999888888


Q ss_pred             HHHHHhc----CC-CceEEEEecccCCcccccccccHHHHHHHhCCcee-EEecCChHHHHHHhcCCceEeeCC
Q 047623          210 TGLLECD----GI-RDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL-GVIPEDSEVIRSTNRGYPLVLNKP  277 (340)
Q Consensus       210 ~~~l~~~----~~-~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~-~~Ip~d~~~~~a~~~g~~v~~~~~  277 (340)
                      ++.+...    +. -+..+++|++..+.. ........+..+  +.+++ ..|+....+.++...|.+.....+
T Consensus       127 ~~~v~~~~~~~~~~l~~~iv~~~~~~~~~-~~~~~~~~~~~~--~~~vl~t~I~~r~~~~~a~~~G~~~~~~~~  197 (231)
T PRK13849        127 YRYVIELLLSENLAIPTAILRQRVPVGRL-TTSQRAMSDMLE--SLPVVDSPMHERDAFAAMKERGMLHLTLLN  197 (231)
T ss_pred             HHHHHHHHHHhCCCCCeEEEEEecccccC-CHHHHHHHHHHh--cCCCCCccccchHHHHHHHhcCCcccchhh
Confidence            7666431    11 245699999864321 111111223333  45566 679999999999999997765444

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=99.93  E-value=1.8e-24  Score=183.30  Aligned_cols=176  Identities=32%  Similarity=0.419  Sum_probs=127.2

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhh--cCCCccccceecccccC
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVL--NGDCRLDQALVRDKRWS  129 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l--~~~~~~~~~~~~~~~~~  129 (340)
                      .|+|+|+|||+||||+|+|||..+    ++|++||+|++.++++.+|+.+......   ..  .+....          +
T Consensus         1 ~I~v~s~kgG~GKSt~a~nLA~~l----~~vlliD~D~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~----------~   63 (179)
T cd03110           1 QIAVISGKGGTGKTTVTAALAALL----KNVVLADCDVDAPNLHLFLKPEIEEEED---FIVGGKKAVI----------D   63 (179)
T ss_pred             CEEEEcCCCCCCHHHHHHHHHHHH----hCcEEEECCCCCCchhhhcCCCcccccc---ceecCCceEE----------c
Confidence            489999999999999999999999    7999999999999999999987643211   11  000000          1


Q ss_pred             ceeEeecCCCCCCCCCCcchhhHHHHHHHHHHh-ccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHHHH
Q 047623          130 NFELLCISKPRSKLPLGFGGKALTWVVEALKSR-QEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADR  208 (340)
Q Consensus       130 ~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~  208 (340)
                      .......+         ........+.+.+... ...+||||||||||+.+.....++..||.+++|+.++..++..+.+
T Consensus        64 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~d~viiDtpp~~~~~~~~~l~~aD~vliv~~~~~~~~~~~~~  134 (179)
T cd03110          64 PELCISCG---------LCGKLVTEVRKHAKEIAKAEGAELIIIDGPPGIGCPVIASLTGADAALLVTEPTPSGLHDLER  134 (179)
T ss_pred             hhhhcccc---------chHHHHHHHHHHHHHhhhhcCCCEEEEECcCCCcHHHHHHHHcCCEEEEEecCCcccHHHHHH
Confidence            11111000         0012222233333211 1357999999999999888888889999999999999999999999


Q ss_pred             HHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEec
Q 047623          209 VTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIP  257 (340)
Q Consensus       209 ~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip  257 (340)
                      +++.++..+.+ +++|+|+++....   .....+++.+.+|.++++.||
T Consensus       135 ~~~~l~~~~~~-~~vV~N~~~~~~~---~~~~~~~~~~~~~~~vl~~ip  179 (179)
T cd03110         135 AVELVRHFGIP-VGVVINKYDLNDE---IAEEIEDYCEEEGIPILGKIP  179 (179)
T ss_pred             HHHHHHHcCCC-EEEEEeCCCCCcc---hHHHHHHHHHHcCCCeEEeCC
Confidence            99999877654 6899999987642   222355677788999999987

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]

Probab=99.93  E-value=5.5e-24  Score=183.67  Aligned_cols=235  Identities=31%  Similarity=0.396  Sum_probs=170.3

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccH-----HHhhc----------C
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTV-----VEVLN----------G  114 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l-----~~~l~----------~  114 (340)
                      |+.|+|+|+|||+||||+|+|||..|+. .++++|+|+|...|+++.+|+.+.......     ..+-.          .
T Consensus         1 mm~vAV~sGKGGtGKTTva~~la~~l~~-~~~~~l~DcDVe~PNl~l~l~~e~~~~~e~~~~~~p~i~~e~C~~CG~C~~   79 (284)
T COG1149           1 MMQVAVASGKGGTGKTTVAANLAVLLGD-KYKLVLADCDVEAPNLHLLLGVEVLEEEEVIRGEIPEIDPEKCIRCGKCAE   79 (284)
T ss_pred             CcEEEEeecCCCCChhhHHHHHHHHhcc-ccceEEEecCCCCCCcceEeccchhhhhHHHHhhccccChhhccccCcHHH
Confidence            4679999999999999999999999986 479999999999999999998763311100     00000          0


Q ss_pred             CCccccceecccccCc-----------eeEe-----------------ecCC----CCCCCCCCcchhhHHHHHHHHHHh
Q 047623          115 DCRLDQALVRDKRWSN-----------FELL-----------------CISK----PRSKLPLGFGGKALTWVVEALKSR  162 (340)
Q Consensus       115 ~~~~~~~~~~~~~~~~-----------l~~l-----------------~~~~----~~~~~~~~~~~~~~~~l~~~l~~~  162 (340)
                      -+.++..+.-....+.           ..+.                 .+..    ...........+....++..+++.
T Consensus        80 vC~f~Ai~~~~~~~~~~~~~lC~GCgaC~~~CP~~AI~~~~~~~G~i~~~k~~~g~~li~g~l~vGe~~s~~lV~~~kk~  159 (284)
T COG1149          80 VCRFGAIVVLPGGKPVLNPDLCEGCGACSIVCPEPAIEEEPVVIGKIYESKTDYGFPLISGRLNVGEEESGKLVTALKKH  159 (284)
T ss_pred             hCCCCeEEEcCCCceecCcccccCcccceeeCCCcccccccceeeEEEEEEcCCCceeEEeeccCCccccchHHHHHHHh
Confidence            1122222110000000           0000                 0000    000111123344456677777665


Q ss_pred             ccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHH
Q 047623          163 QEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVL  242 (340)
Q Consensus       163 ~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~  242 (340)
                      ..+.-|++|||+||+.+-...+++..+|.+|+|+.|++.+++.+++.++.++..+++ .++|+||++...    .  .++
T Consensus       160 a~E~~~~~IIDsaaG~gCpVi~sl~~aD~ai~VTEPTp~glhD~kr~~el~~~f~ip-~~iViNr~~~g~----s--~ie  232 (284)
T COG1149         160 AKELADLLIIDSAAGTGCPVIASLKGADLAILVTEPTPFGLHDLKRALELVEHFGIP-TGIVINRYNLGD----S--EIE  232 (284)
T ss_pred             hhhhcceeEEecCCCCCChHHHhhccCCEEEEEecCCccchhHHHHHHHHHHHhCCc-eEEEEecCCCCc----h--HHH
Confidence            544579999999999999999999999999999999999999999999999987764 679999995442    1  477


Q ss_pred             HHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCCCHHHHHHHHHHHHHHh
Q 047623          243 DIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAWRLVE  294 (340)
Q Consensus       243 ~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~s~~~~~~~~la~~i~~  294 (340)
                      +..+..|.++++.||+|..+.++...|.|+..  ++++.+..+..+++++++
T Consensus       233 ~~~~e~gi~il~~IPyd~~i~~~~~~g~~~~~--~~~k~~~~~~~~~~~~~~  282 (284)
T COG1149         233 EYCEEEGIPILGEIPYDKDIPEAYVNGEPFVE--PDSKEAEAILEEAEKLKE  282 (284)
T ss_pred             HHHHHcCCCeeEECCcchhHHHHHhCCCcccc--ccchHHHHHHHHHHHHHh
Confidence            88999999999999999999999999999988  677788888888777765

>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]

Probab=99.92  E-value=1.9e-23  Score=175.60  Aligned_cols=239  Identities=24%  Similarity=0.358  Sum_probs=181.7

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCC-----ccccceec
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDC-----RLDQALVR  124 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~-----~~~~~~~~  124 (340)
                      ++.|+|. +|||.||||++.|+|++||+.|++|++|-|||...+...++|-...  .++.|.+....     .+++.+. 
T Consensus         1 mr~iAiY-GKGGIGKSTts~N~aAAla~~GkkVl~vGCDPKaDSTr~Llgg~~i--pTVld~lre~~~~e~~~ledvi~-   76 (278)
T COG1348           1 MRQIAIY-GKGGIGKSTTSQNLAAALAELGKKVLIVGCDPKADSTRLLLGGKAI--PTVLDTLREKGEVEDLELEDVIF-   76 (278)
T ss_pred             CceEEEe-cCCCcCcchhHHHHHHHHHHcCCeEEEEcCCCCcchHHHHhCCccc--chHHHHHHhcCccccCCHHHhee-
Confidence            4678998 8999999999999999999999999999999996666666663332  57777776533     2233332 


Q ss_pred             ccccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHh--ccCCCCEEEEcCCCCCC-HHHHHHHh--cCCeEEEEeCCC
Q 047623          125 DKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSR--QEGSPDFILIDCPAGID-AGFITAIT--PANEAVLVTTPD  199 (340)
Q Consensus       125 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~~D~VIiD~~~~~~-~~~~~~l~--~ad~viiv~~~~  199 (340)
                       +++.++..+-++.+.+.  ..+....+...++.|.++  ..+..|+||+|..+.+- -.+...+.  .||.+++|++.+
T Consensus        77 -~Gf~Gv~CVEsGGPepG--vGCAGRGVitai~~Le~lgaf~~~~DvviyDVLGDVVCGGFAmPiReg~AdeiyIVtSge  153 (278)
T COG1348          77 -TGFGGVKCVESGGPEPG--VGCAGRGVITAINLLEELGAFEEDLDVVIYDVLGDVVCGGFAMPIREGYADEIYIVTSGE  153 (278)
T ss_pred             -ccCCceEEeecCCCCCC--CCcccchHHHHHHHHHHhCCccccCCEEEEeccCceeecceeeehhcccCcEEEEEecCc
Confidence             34567777655554333  234555566666666654  13346999999998652 22333444  699999999999


Q ss_pred             hhhHHHHHHHHHHHHhc----CCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEee
Q 047623          200 ITSLRDADRVTGLLECD----GIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLN  275 (340)
Q Consensus       200 ~~s~~~~~~~~~~l~~~----~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~  275 (340)
                      .+++.++..+.+-+.+.    +.+..++|.|.-..+.    ...-..++.+.+|.+++..||++..+.++...++++.++
T Consensus       154 ~MalYAANNI~kgi~k~a~~~~~rLgGiIcNsr~~~~----e~e~v~~fa~~igt~li~~vPr~~ivq~aE~~~kTvie~  229 (278)
T COG1348         154 MMALYAANNIAKGIRKYAKTGGVRLGGIICNSRSVDR----ERELVEAFAERLGTQLIHFVPRDNIVQKAELNGKTVIEY  229 (278)
T ss_pred             hHHHHHHHHHHHHHHHHhhcCCcceeeEEecCCCccc----HHHHHHHHHHHhCCceEeeccchHHHHHHHHcCcchhhh
Confidence            99999999888887653    3456778888755332    223477899999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHhccccc
Q 047623          276 KPPTLAGLAFEQAAWRLVEQDSMK  299 (340)
Q Consensus       276 ~~~s~~~~~~~~la~~i~~~~~~~  299 (340)
                      +|+|..+..|++||++|.+-...-
T Consensus       230 ~P~s~~a~~yr~LA~~I~~n~~~v  253 (278)
T COG1348         230 APDSNQAEEYRELAKKILENEKGV  253 (278)
T ss_pred             CcchhHHHHHHHHHHHHHhCCCCc
Confidence            999999999999999999988654

>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases

Probab=99.92  E-value=1.6e-24  Score=185.80  Aligned_cols=191  Identities=30%  Similarity=0.409  Sum_probs=125.5

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCcee
Q 047623           53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNFE  132 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~  132 (340)
                      |+|+|+|||+||||+|++||.+|+++|++|+++|+|++.+....+++.......+.......          ...++...
T Consensus         1 I~v~~~kGG~GKTt~a~~la~~la~~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~   70 (195)
T PF01656_consen    1 IAVTSGKGGVGKTTIAANLAQALARKGKKVLLIDLDPQAPNLSILFGVYDILREGLENANAI----------LKNFESQD   70 (195)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEESTTSHHHHHHTTCHHHHTTSSHGHHCH----------HESCCHHH
T ss_pred             CEEEcCCCCccHHHHHHHHHhccccccccccccccCcccccHHHHhcchhhccccceehhhh----------hhccchhh
Confidence            78999999999999999999999999999999999999666666654410000000000000          00000000


Q ss_pred             EeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHH
Q 047623          133 LLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGL  212 (340)
Q Consensus       133 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~  212 (340)
                      +..       .........+..+++.+.+   ..||+||||||++.......++..+|.+|+|+.++..++..+.++++.
T Consensus        71 ~~~-------~~~~~~~~~l~~~l~~l~~---~~yD~iiiD~~~~~~~~~~~~l~~ad~viv~~~~~~~~i~~~~~~~~~  140 (195)
T PF01656_consen   71 IYQ-------GEEYLDPELLREILESLIK---SDYDYIIIDTPPGLSDPVRNALAAADYVIVPIEPDPSSIEGAERLIEL  140 (195)
T ss_dssp             HHH-------HCHCHHHHHHHHHHHHHHH---TTSSEEEEEECSSSSHHHHHHHHTSSEEEEEEESSHHHHHHHHHHHHH
T ss_pred             hhh-------hhhhhHHHHHHHHHHHhhh---ccccceeecccccccHHHHHHHHhCceeeeecCCcHHHHHHHHHHHHH
Confidence            000       0000122334555555444   249999999999999999999999999999999999999999999999


Q ss_pred             HHhcC--CCceEEEEecccCCcccccccccHHHHHHHhC-Ccee-EEecCChHHHH
Q 047623          213 LECDG--IRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLG-LALL-GVIPEDSEVIR  264 (340)
Q Consensus       213 l~~~~--~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g-~~v~-~~Ip~d~~~~~  264 (340)
                      ++..+  .+.+++|+|+++++....... .......... ..++ +.||++.++.+
T Consensus       141 l~~~~~~~~~~~vv~N~v~~~~~~~~~~-~~~~~~~~~~~~~vl~~~Ip~~~~v~~  195 (195)
T PF01656_consen  141 LKRLGKKLKIIGVVINRVDPGNESKLQE-EIEEIERELYVPVVLPGVIPYSEAVSE  195 (195)
T ss_dssp             HHHHTHTEEEEEEEEEEETSCCHHHHHH-HHHHHHHHCECCCBESEEEE--HHHHH
T ss_pred             HHHhccccceEEEEEeeeCCCccchHHH-HHHHHHHHhCCCcCcCCcCCCCCCCCC
Confidence            99866  458899999997763211111 1222233333 3344 89999998754

These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=99.88  E-value=1.3e-21  Score=158.77  Aligned_cols=135  Identities=40%  Similarity=0.624  Sum_probs=109.6

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCce
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNF  131 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l  131 (340)
                      +|+|+++|||+||||++.++|..++++|.+|+++|+|++.+++.                                    
T Consensus         1 ~i~~~~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~~~~~------------------------------------   44 (139)
T cd02038           1 IIAVTSGKGGVGKTNISANLALALAKLGKRVLLLDADLGLANLD------------------------------------   44 (139)
T ss_pred             CEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCCCCCC------------------------------------
Confidence            58999999999999999999999999999999999998732211                                    


Q ss_pred             eEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHHHHHHH
Q 047623          132 ELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTG  211 (340)
Q Consensus       132 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~  211 (340)
                                                         ||+||||+|++.+.....++..||.+++|+.++..+++.+.++++
T Consensus        45 -----------------------------------yd~VIiD~p~~~~~~~~~~l~~aD~vviv~~~~~~s~~~~~~~l~   89 (139)
T cd02038          45 -----------------------------------YDYIIIDTGAGISDNVLDFFLAADEVIVVTTPEPTSITDAYALIK   89 (139)
T ss_pred             -----------------------------------CCEEEEECCCCCCHHHHHHHHhCCeEEEEcCCChhHHHHHHHHHH
Confidence                                               999999999999988899999999999999999999999999998


Q ss_pred             HHHhc-CCCceEEEEecccCCcccccccccHHHHHHH---hCCceeEEec
Q 047623          212 LLECD-GIRDIKMVVNRVRTDMIKGEDMMSVLDIQEM---LGLALLGVIP  257 (340)
Q Consensus       212 ~l~~~-~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~---~g~~v~~~Ip  257 (340)
                      .+... +..++++|+|++.+.....+....+.++.+.   .++++++.||
T Consensus        90 ~l~~~~~~~~~~lVvN~~~~~~~~~~~~~~~~~~~~r~~~~~l~~~~~~~  139 (139)
T cd02038          90 KLAKQLRVLNFRVVVNRAESPKEGKKVFKRLSNVSNRFLGLSLDYLGFIP  139 (139)
T ss_pred             HHHHhcCCCCEEEEEeCCCCHHHHHHHHHHHHHHHHHHhCCChhhceecC
Confidence            88653 4468899999998764333333333333332   3457777776

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=99.87  E-value=5.3e-21  Score=147.57  Aligned_cols=102  Identities=34%  Similarity=0.571  Sum_probs=94.1

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCc
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARL-GFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSN  130 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~-g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  130 (340)
                      +|+|+|+|||+||||++.|||..+++. |++|+++|+|++.++                                     
T Consensus         1 ~i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~~-------------------------------------   43 (106)
T cd03111           1 VIAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFGD-------------------------------------   43 (106)
T ss_pred             CEEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCCC-------------------------------------
Confidence            589999999999999999999999998 999999999999332                                     


Q ss_pred             eeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHHHHHH
Q 047623          131 FELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVT  210 (340)
Q Consensus       131 l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~  210 (340)
                                                           |+||||+||+.+.....++..||.+++|+.++..++..+.+++
T Consensus        44 -------------------------------------D~IIiDtpp~~~~~~~~~l~~aD~vlvvv~~~~~s~~~~~~~~   86 (106)
T cd03111          44 -------------------------------------DYVVVDLGRSLDEVSLAALDQADRVFLVTQQDLPSIRNAKRLL   86 (106)
T ss_pred             -------------------------------------CEEEEeCCCCcCHHHHHHHHHcCeEEEEecCChHHHHHHHHHH
Confidence                                                 8999999999999888999999999999999999999999999


Q ss_pred             HHHHhcCC---CceEEEEec
Q 047623          211 GLLECDGI---RDIKMVVNR  227 (340)
Q Consensus       211 ~~l~~~~~---~~~~vviN~  227 (340)
                      +.+++.+.   .++.+|+||
T Consensus        87 ~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          87 ELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             HHHHHcCCCCcCceEEEecC
Confidence            99987664   488899996

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D

Probab=99.84  E-value=1.2e-20  Score=156.19  Aligned_cols=146  Identities=31%  Similarity=0.451  Sum_probs=114.9

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCC---------Cccccc
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGD---------CRLDQA  121 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~---------~~~~~~  121 (340)
                      |+|+|+|.+||+|||++|.|||..+|+.|++|++||+|..++.+..+++.+..  .++.+++...         ..+.+.
T Consensus         1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~~~~~~~~~~~~~--~~l~~~l~~~~~~~~~~~~~~l~~~   78 (157)
T PF13614_consen    1 KVIAVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFDFFSPSLSRLLGIEPE--RGLSDLLYDKKSGDENLSERDLSDH   78 (157)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS-HHHHHTTSSSS--SSHHHHHTTSHC--C-HHHSHHHHH
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCCCcccccccccc--cchhhHhcCccccccchhhhhHHHH
Confidence            68999999999999999999999999999999999999998999999988765  6888998876         344444


Q ss_pred             eecccccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHH-HHHhcCCeEEEEeCCCh
Q 047623          122 LVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFI-TAITPANEAVLVTTPDI  200 (340)
Q Consensus       122 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~-~~l~~ad~viiv~~~~~  200 (340)
                      +.+.. .++++++++....... ..+..+.+..+++.+++    .||+||||+|+....... .++..||.+++++.++.
T Consensus        79 ~~~~~-~~~l~~~~~~~~~~~~-~~~~~~~~~~li~~l~~----~yd~IivD~~~~~~~~~~~~~l~~~D~ii~v~~~~~  152 (157)
T PF13614_consen   79 IYSDA-HDGLDLLPPPSSPEDL-EELTPEDVEELIDALKE----HYDYIIVDLPSSLSNPDTQAVLELADKIILVVRPDV  152 (157)
T ss_dssp             CEEES-STTEEEE--SSSSHHH-HHHTSHHHHHHHHHHHH----HSSEEEEEEESTTTHTHHHHHHTTHSEEEEEEETTH
T ss_pred             heecc-CCCeEEecCCCCCCch-hhcCHHHHHHHHHHHHH----cCCEEEEECcCCccHHHHHHHHHHCCEEEEEECCCc
Confidence            44322 2778888766554322 23566788899999988    699999999999877765 48899999999999999


Q ss_pred             hhHH
Q 047623          201 TSLR  204 (340)
Q Consensus       201 ~s~~  204 (340)
                      .+++
T Consensus       153 ~s~~  156 (157)
T PF13614_consen  153 TSIR  156 (157)
T ss_dssp             HHHH
T ss_pred             cccc
Confidence            8875

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=99.83  E-value=2.7e-19  Score=153.36  Aligned_cols=184  Identities=22%  Similarity=0.193  Sum_probs=122.3

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWS  129 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  129 (340)
                      |++|+|.|.|||+||||.+..||..|+++|.+|++||+||+ ..+..|-......+           .+.         +
T Consensus         1 M~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn-~pl~~W~~~a~~~~-----------~~~---------~   59 (231)
T PF07015_consen    1 MPVITFASSKGGAGKTTAAMALASELAARGARVALIDADPN-QPLAKWAENAQRPG-----------AWP---------D   59 (231)
T ss_pred             CCeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCC-CcHHHHHHhccccC-----------CCC---------C
Confidence            68999999999999999999999999999999999999999 44443321111100           000         1


Q ss_pred             ceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHHHHH
Q 047623          130 NFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRV  209 (340)
Q Consensus       130 ~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~  209 (340)
                      ++.+...          .....+...++....   ..|||||||+.++-+.....++..||.||+|+.++..+...+.+.
T Consensus        60 ~~~V~~~----------~e~~~l~~~~e~a~~---~~~d~VlvDleG~as~~~~~aia~sDlVlIP~~~s~lD~~eA~~t  126 (231)
T PF07015_consen   60 RIEVYEA----------DELTILEDAYEAAEA---SGFDFVLVDLEGGASELNDYAIARSDLVLIPMQPSQLDADEAAKT  126 (231)
T ss_pred             CeeEEec----------cchhhHHHHHHHHHh---cCCCEEEEeCCCCCchhHHHHHHHCCEEEECCCCChHHHHHHHHH
Confidence            2222110          011122333333332   359999999999988888999999999999999999999999988


Q ss_pred             HHHHHhc----CC-CceEEEEecccCCcccccccccHHHHHHHhCCceeE-EecCChHHHHHHhcCC
Q 047623          210 TGLLECD----GI-RDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLG-VIPEDSEVIRSTNRGY  270 (340)
Q Consensus       210 ~~~l~~~----~~-~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~-~Ip~d~~~~~a~~~g~  270 (340)
                      ++.+.+.    +. -...++++|++... .......+.++.+  ++|++. .+.+...+.+-...|.
T Consensus       127 ~~~v~~~~~~~~~~ip~~Vl~Tr~~~~~-~~~~~~~~~e~~~--~lpvl~t~l~eR~Af~~m~~~G~  190 (231)
T PF07015_consen  127 FKWVRRLEKAERRDIPAAVLFTRVPAAR-LTRAQRIISEQLE--SLPVLDTELHERDAFRAMFSRGL  190 (231)
T ss_pred             HHHHHHHHHhhCCCCCeeEEEecCCcch-hhHHHHHHHHHHh--cCCccccccccHHHHHHHHHhcc
Confidence            8888753    11 25679999987542 1111111222222  477774 4545555655556664

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=99.82  E-value=2.8e-19  Score=137.68  Aligned_cols=99  Identities=28%  Similarity=0.411  Sum_probs=88.2

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCce
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNF  131 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l  131 (340)
                      +|+|.|.|||+||||+|.+||..++++|.+|+++|+|++                                         
T Consensus         1 ~i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~-----------------------------------------   39 (104)
T cd02042           1 VIAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ-----------------------------------------   39 (104)
T ss_pred             CEEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC-----------------------------------------
Confidence            589999999999999999999999999999999999987                                         


Q ss_pred             eEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHHHHHHH
Q 047623          132 ELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTG  211 (340)
Q Consensus       132 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~  211 (340)
                                                         ||+||||+||+.+.....++..||.+++|+.++..++..+.++++
T Consensus        40 -----------------------------------~d~viiD~p~~~~~~~~~~l~~ad~viv~~~~~~~s~~~~~~~~~   84 (104)
T cd02042          40 -----------------------------------YDYIIIDTPPSLGLLTRNALAAADLVLIPVQPSPLDLDGLEKLLE   84 (104)
T ss_pred             -----------------------------------CCEEEEeCcCCCCHHHHHHHHHCCEEEEeccCCHHHHHHHHHHHH
Confidence                                               899999999999888889999999999999999999999999988


Q ss_pred             H---HHhc--CCCceEEEEe
Q 047623          212 L---LECD--GIRDIKMVVN  226 (340)
Q Consensus       212 ~---l~~~--~~~~~~vviN  226 (340)
                      .   .+..  .....++|+|
T Consensus        85 ~~~~~~~~~~~~~~~~vv~n  104 (104)
T cd02042          85 TLILEDRLNPDLDILGILPT  104 (104)
T ss_pred             HHHHHHhcCCCCceEEEEeC
Confidence            3   3322  3356777776

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA)

Probab=99.81  E-value=1.7e-19  Score=160.97  Aligned_cols=175  Identities=21%  Similarity=0.169  Sum_probs=111.3

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcC----CCcccHHHhhcCCCccccceeccccc
Q 047623           53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLEN----RVNYTVVEVLNGDCRLDQALVRDKRW  128 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~----~~~~~l~~~l~~~~~~~~~~~~~~~~  128 (340)
                      +.++++|||+||||+|+++|..+|+.|++|++||+|++ ++++.+|+.+-    .+..++.++.....+..+.+.+.. .
T Consensus         2 ~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~-~sl~~~~~~~~~~~~~~~~g~~~L~~~~id~~~~~~~~~-~   79 (254)
T cd00550           2 YIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA-HSLSDSFNQEFGKGPTPVKGVENLSAMEIDPQEALEEYR-Q   79 (254)
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc-ccHHHHhCCccCCCCcccccCCCceEEecCHHHHHHHHH-H
Confidence            45667999999999999999999999999999999998 79999998761    122233333333333222221110 0


Q ss_pred             CceeEeecCCCCCC-------CCCCcchhh---HHHHHHHHHHhccCCCCEEEEcCCCCCCHH---H--------HHHHh
Q 047623          129 SNFELLCISKPRSK-------LPLGFGGKA---LTWVVEALKSRQEGSPDFILIDCPAGIDAG---F--------ITAIT  187 (340)
Q Consensus       129 ~~l~~l~~~~~~~~-------~~~~~~~~~---~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~---~--------~~~l~  187 (340)
                      ...+.+........       .....+.++   +..+.+.+.   ..+||+|||||||.....   .        ...+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~Pg~~e~l~~~~~~~~l~---~~~yD~VVvDtpPtg~tlrlL~lp~~l~~~~~~l~  156 (254)
T cd00550          80 EVLEPIEANLLLEMLKGILEEELESPGIEEIAAFDEFSRYID---EAEYDVVVFDTAPTGHTLRLLSLPTVLSWAREILS  156 (254)
T ss_pred             HHHHHHHhhccchhHHHHHHHHhcCCCHHHHHHHHHHHHHHh---cCCCCEEEECCCCcHHHHHHHHhHHHHHHHHHHhc
Confidence            11111111100000       000011111   222333332   237999999999952211   0        11222


Q ss_pred             --cCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCc
Q 047623          188 --PANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDM  232 (340)
Q Consensus       188 --~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~  232 (340)
                        ..+.+++|+.++..++..+.+.++.+...+.+..++|+|++.+..
T Consensus       157 d~~~~~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~gvV~N~v~~~~  203 (254)
T cd00550         157 DPERTSFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQLLPED  203 (254)
T ss_pred             CCcceEEEEEeCCChhHHHHHHHHHHHHHHCCCCCCEEEEecCcccc
Confidence              245799999999999999999999999999999999999998754

This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.

>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments

Probab=99.80  E-value=1.1e-19  Score=156.09  Aligned_cols=223  Identities=19%  Similarity=0.171  Sum_probs=124.2

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCc
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSN  130 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  130 (340)
                      .+|+|.|+|||+||||+|+|||.+|+++|++|.++|+|.+.+++..+++.....    .+  .....+     .   .+.
T Consensus         1 HiIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~Di~q~S~~r~l~nr~~~----~~--~~gi~L-----p---~p~   66 (261)
T PF09140_consen    1 HIIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLDIRQPSLPRYLENRAAW----AQ--RDGIEL-----P---VPS   66 (261)
T ss_dssp             EEEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--TTT-HHHHHHHHHHHH----HH--HHT--------------E
T ss_pred             CEEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCCHHHHHhccchh----HH--hcCccc-----C---Ccc
Confidence            489999999999999999999999999999999999999889898888533210    00  000000     0   011


Q ss_pred             eeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHH----
Q 047623          131 FELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDA----  206 (340)
Q Consensus       131 l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~----  206 (340)
                      ...++................+.+++..+..    ++||+|||||++.+.....+...||.++.|...+..+++-+    
T Consensus        67 ~~~L~~~~~~v~~~~~~~~~~L~q~l~~l~~----~~DfLVID~PGtd~~lsr~Ahs~ADtLiTPlNdSfvDfDllg~vD  142 (261)
T PF09140_consen   67 HFFLPPDQASVWEGENVEDKRLEQALADLEG----DLDFLVIDTPGTDDRLSRVAHSMADTLITPLNDSFVDFDLLGQVD  142 (261)
T ss_dssp             EE-SSSHHHHTTS-HHHHHHHHHHHHHHHHH----H-SEEEEEE-SSS-HHHHHHHHT-SEEEEEEESSHHHHCCCEEE-
T ss_pred             ceeecccccccccCcchhHHHHHHHHHHHhc----CCCEEEEeCCCCCcHHHHHHHHhCCEEEccCchhHHhHHHHhccC
Confidence            1112110000000000111234444544443    79999999998888888888899999999998876665422    


Q ss_pred             ------------HHHHHHHHhcCC----C--ceEEEEecccCCcccc--cccccHHHHHHHhCCceeEEecCChHHHHHH
Q 047623          207 ------------DRVTGLLECDGI----R--DIKMVVNRVRTDMIKG--EDMMSVLDIQEMLGLALLGVIPEDSEVIRST  266 (340)
Q Consensus       207 ------------~~~~~~l~~~~~----~--~~~vviN~~~~~~~~~--~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~  266 (340)
                                  .+++...++...    .  ...++-||.......+  .....+.++.+..|+++..-+.+.-.+++..
T Consensus       143 ~~~~~v~~ps~Yse~vw~~r~~ra~~~~~~idWvv~rnRl~~~~a~Nk~~~~~~l~~ls~rigfr~~~G~~eRvi~RelF  222 (261)
T PF09140_consen  143 PETFKVIGPSVYSEMVWEARKLRAQADGKPIDWVVLRNRLSHLDARNKRRVEEALEELSKRIGFRVAPGFSERVIYRELF  222 (261)
T ss_dssp             TTTS-EEEE-HHHHHHHHHHHCCCCTSSS--EEEEEEESBTT--HHHHHHHHHHHHHHHHHHT-EEEE--B--HHHCCCG
T ss_pred             cccceecCccHHHHHHHHHHHHHHHcCCCCccEEEEecCccHHHhHHHHHHHHHHHHHHHhhCceeCCCcchhhhhHHhc
Confidence                        233333343222    2  3446668876543111  1223466788888999987777777777888


Q ss_pred             hcCCceEeeCCCC---------HHHHHHHHHHHH
Q 047623          267 NRGYPLVLNKPPT---------LAGLAFEQAAWR  291 (340)
Q Consensus       267 ~~g~~v~~~~~~s---------~~~~~~~~la~~  291 (340)
                      -.|.++.+.....         .+.+++++|...
T Consensus       223 p~GlTllDl~~~~~~~~~~shvaARqElr~l~~~  256 (261)
T PF09140_consen  223 PRGLTLLDLKDAGVGALNMSHVAARQELRDLLKA  256 (261)
T ss_dssp             GGT--GGGSCTTB-S---CHHHHHHHHHHHHHHH
T ss_pred             cccchhhccccccCCCCchHHHHHHHHHHHHHHH
Confidence            8888877654322         356666666554

Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.

>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell

Probab=99.80  E-value=2.2e-19  Score=156.65  Aligned_cols=166  Identities=23%  Similarity=0.172  Sum_probs=105.4

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcC---CCccccceecc----
Q 047623           53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNG---DCRLDQALVRD----  125 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~---~~~~~~~~~~~----  125 (340)
                      |.++++|||+||||+++++|.++++.|++|++||+|++.+ +..    .  ...++.+++..   ....+....+.    
T Consensus         1 ~~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~~-~~~----~--~~~~L~~~l~~~~~~~~~~~~~~~~~~~~   73 (217)
T cd02035           1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAHN-LSD----K--GLPNLSDAFIVEDPEIAPNLYREEVDATR   73 (217)
T ss_pred             CEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECCCCcc-ccc----c--cCCCchhhhccCChHHHHHHHHHHHHHHH
Confidence            4577899999999999999999999999999999999963 111    0  11233333321   00000000000    


Q ss_pred             -----cccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCC-CCEEEEcCCCCCCH---HHHHHHhc--CCeEEE
Q 047623          126 -----KRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGS-PDFILIDCPAGIDA---GFITAITP--ANEAVL  194 (340)
Q Consensus       126 -----~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~D~VIiD~~~~~~~---~~~~~l~~--ad~vii  194 (340)
                           ....+..+++...........+   .+..+++.+.+    . ||+|||||||....   .....+..  +|.+++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~p~~~ell---~~~~l~~~l~~----~~yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vll  146 (217)
T cd02035          74 RVERAWGGEGGLMLELAAALPGIEELA---SLLAVFREFSE----GLYDVIVFDTAPTGHTLRLLVRELLTDPERTSFRL  146 (217)
T ss_pred             HhhhcccchhhhHHhHhccCCCHHHHH---HHHHHHHHHhc----CCCCEEEECCCCchHHHHHHHHHHccCCCceEEEE
Confidence                 0002223333222221111100   13344444443    5 99999999996432   22333433  489999


Q ss_pred             EeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCc
Q 047623          195 VTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDM  232 (340)
Q Consensus       195 v~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~  232 (340)
                      |+.++..++..+.+.++.++..+.+..++|+|++.+..
T Consensus       147 V~~p~~~s~~~~~~~l~~l~~~~~~~~glVlN~~~~~~  184 (217)
T cd02035         147 VTLPEKLPLYETERAITELALYGIPVDAVVVNRVLPAE  184 (217)
T ss_pred             EeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCcc
Confidence            99999999999999999999999888999999988754

This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.

>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B

Probab=99.65  E-value=4.8e-15  Score=135.25  Aligned_cols=179  Identities=26%  Similarity=0.304  Sum_probs=101.1

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcc-cHH---HhhcCCCccccceec--
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNY-TVV---EVLNGDCRLDQALVR--  124 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~-~l~---~~l~~~~~~~~~~~~--  124 (340)
                      ++|. +++||||||||+|+.+|.++|++|++|+++..||. .+++..||.+-.... .+.   ++..-+.+....+.+  
T Consensus         2 r~~~-~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa-~~L~d~l~~~~~~~~~~v~~~~~L~a~eid~~~~~~~~~   79 (305)
T PF02374_consen    2 RILF-FGGKGGVGKTTVAAALALALARRGKRTLLVSTDPA-HSLSDVLGQKLGGEPTKVEGVPNLSAMEIDPEAELEEYW   79 (305)
T ss_dssp             SEEE-EEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTT-THHHHHHTS--BSS-EEETTCSSEEEEE--HHHHHHHHH
T ss_pred             eEEE-EecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCC-ccHHHHhCCcCCCCCeEecCCCCceeeecCHHHHHHHHH
Confidence            4444 45999999999999999999999999999999999 888888876421100 000   000000000000000  


Q ss_pred             --cc-ccC-ceeEeecCCCCCCCCCC-cchh---hHHHHHHHHHHhccCCCCEEEEcCCCCCCHH---------------
Q 047623          125 --DK-RWS-NFELLCISKPRSKLPLG-FGGK---ALTWVVEALKSRQEGSPDFILIDCPAGIDAG---------------  181 (340)
Q Consensus       125 --~~-~~~-~l~~l~~~~~~~~~~~~-~~~~---~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~---------------  181 (340)
                        .. ... .+.......-....... .+.+   .+..+.+.+.   ..+||+||+||||.-...               
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~PG~~E~~~l~~l~~~~~---~~~~D~IVvDt~ptg~tLrlL~lP~~l~~~l~~  156 (305)
T PF02374_consen   80 EEVQKDLSSLLPLIGLERILDEELSSLPGLDELAALLRLADLLE---SGEYDLIVVDTPPTGHTLRLLSLPERLRWWLDR  156 (305)
T ss_dssp             HHHHHGCSTCHHCHHHHHHHHHHTTSSTTHHHHHHHHHHHHHHH---HCSTSEEEEESSSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhccchhhhhhHHHHHHHHhcCCcHHHHHHHHHHHHHHH---hCCCCEEEECCCCcHHHHHHHhHHHHHHHHHHH
Confidence              00 000 00000000000000000 1111   1223333333   368999999999952110               


Q ss_pred             -----------------------------------------HHHHHhc--CCeEEEEeCCChhhHHHHHHHHHHHHhcCC
Q 047623          182 -----------------------------------------FITAITP--ANEAVLVTTPDITSLRDADRVTGLLECDGI  218 (340)
Q Consensus       182 -----------------------------------------~~~~l~~--ad~viiv~~~~~~s~~~~~~~~~~l~~~~~  218 (340)
                                                               ....+..  ...+++|+.|+..++..+.++.+.+...++
T Consensus       157 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~T~~~lV~~pE~l~i~Et~r~~~~L~~~gi  236 (305)
T PF02374_consen  157 LLKLRRKIRSLARPLSGLGLGAVPLDEILEELEEMRERLERLRELLRDPERTSFRLVTNPEPLAIAETERLLTELKLYGI  236 (305)
T ss_dssp             HHHHHHCHHHHHHHHCHSHCCHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTEEEEEEEESSHHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHhhcchhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEecCCcchHHHHHHHHHHHHhcCC
Confidence                                                     0011211  236999999999999999999999999999


Q ss_pred             CceEEEEecccCCccc
Q 047623          219 RDIKMVVNRVRTDMIK  234 (340)
Q Consensus       219 ~~~~vviN~~~~~~~~  234 (340)
                      +.-.+|+||+-+....
T Consensus       237 ~v~~vVvNrvlp~~~~  252 (305)
T PF02374_consen  237 PVDAVVVNRVLPEEED  252 (305)
T ss_dssp             EEEEEEEEEE-TTCST
T ss_pred             ccCeEEEEcccccccc
Confidence            9999999999876543

...

>cd03114 ArgK-like The function of this protein family is unkown

Probab=99.59  E-value=6.7e-14  Score=114.42  Aligned_cols=145  Identities=21%  Similarity=0.231  Sum_probs=88.4

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCcee
Q 047623           53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNFE  132 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~  132 (340)
                      |.+. +++|+||||++.+++..+.+.|.+|+++|+|++....             ...++.+...+++...    .+++.
T Consensus         2 i~~~-G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~~~~~~-------------~~~~~~~~~~~~~~~~----~~~~~   63 (148)
T cd03114           2 IGIT-GVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFS-------------GGAILGDRIRMERHAS----DPGVF   63 (148)
T ss_pred             EEEE-CCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCCCCCCc-------------ccchhcCceEhhheec----CCCce
Confidence            4455 8999999999999999999999999999999862211             1111111111211111    13333


Q ss_pred             E--eecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHHHHHH
Q 047623          133 L--LCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVT  210 (340)
Q Consensus       133 ~--l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~  210 (340)
                      +  ++.+.....     ........++.++.   .+||+||||+ ++.......++..||.+++|++|+..+-..+... 
T Consensus        64 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~---~~~D~iiIDt-aG~~~~~~~~~~~Ad~~ivv~tpe~~D~y~~~k~-  133 (148)
T cd03114          64 IRSLATRGFLGG-----LSRATPEVIRVLDA---AGFDVIIVET-VGVGQSEVDIASMADTTVVVMAPGAGDDIQAIKA-  133 (148)
T ss_pred             EEEcCCcCcccc-----cchhHHHHHHHHHh---cCCCEEEEEC-CccChhhhhHHHhCCEEEEEECCCchhHHHHhhh-
Confidence            3  333221111     11223344455543   3799999999 5566666778899999999999996555544443 


Q ss_pred             HHHHhcCCCceEEEEeccc
Q 047623          211 GLLECDGIRDIKMVVNRVR  229 (340)
Q Consensus       211 ~~l~~~~~~~~~vviN~~~  229 (340)
                      ..++..+    .+++|+++
T Consensus       134 ~~~~~~~----~~~~~k~~  148 (148)
T cd03114         134 GIMEIAD----IVVVNKAD  148 (148)
T ss_pred             hHhhhcC----EEEEeCCC
Confidence            2233222    37788864

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=99.47  E-value=4.4e-12  Score=113.99  Aligned_cols=166  Identities=20%  Similarity=0.255  Sum_probs=99.5

Q ss_pred             CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccc
Q 047623           47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDK  126 (340)
Q Consensus        47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  126 (340)
                      ...+++|+++ +.+|+||||++++||.++++.|++|+++|+|........          .+..+...            
T Consensus        69 ~~~~~vi~l~-G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~----------ql~~~~~~------------  125 (272)
T TIGR00064        69 ENKPNVILFV-GVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIE----------QLEEWAKR------------  125 (272)
T ss_pred             CCCCeEEEEE-CCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHH----------HHHHHHHh------------
Confidence            3456899999 799999999999999999999999999999975222100          00000000            


Q ss_pred             ccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCH--HHHH-------HHh-----cCCeE
Q 047623          127 RWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDA--GFIT-------AIT-----PANEA  192 (340)
Q Consensus       127 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~--~~~~-------~l~-----~ad~v  192 (340)
                        -++.+++.....       ++.  ....+.+.....++||+|||||+|....  ....       ...     .+|.+
T Consensus       126 --~~i~~~~~~~~~-------dp~--~~~~~~l~~~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~  194 (272)
T TIGR00064       126 --LGVDVIKQKEGA-------DPA--AVAFDAIQKAKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEV  194 (272)
T ss_pred             --CCeEEEeCCCCC-------CHH--HHHHHHHHHHHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceE
Confidence              112222222110       111  1122223222234799999999996632  1111       111     28889


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623          193 VLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL  253 (340)
Q Consensus       193 iiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~  253 (340)
                      ++|+... ..-+.+.+..++.+..  ...++|+|+++......    ....+...++.|+.
T Consensus       195 ~LVl~a~-~~~~~~~~~~~f~~~~--~~~g~IlTKlDe~~~~G----~~l~~~~~~~~Pi~  248 (272)
T TIGR00064       195 LLVLDAT-TGQNALEQAKVFNEAV--GLTGIILTKLDGTAKGG----IILSIAYELKLPIK  248 (272)
T ss_pred             EEEEECC-CCHHHHHHHHHHHhhC--CCCEEEEEccCCCCCcc----HHHHHHHHHCcCEE
Confidence            9998886 3444555554444333  45799999998876322    34466667787776

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=99.46  E-value=6.6e-13  Score=120.97  Aligned_cols=48  Identities=38%  Similarity=0.554  Sum_probs=43.1

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCC
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGL  100 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~  100 (340)
                      .|.++++||||||||+|+.+|.++|+.|++|++|..||. .+++..|+.
T Consensus         3 riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPA-hsL~d~f~~   50 (322)
T COG0003           3 RIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPA-HSLGDVFDL   50 (322)
T ss_pred             EEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCC-CchHhhhcc
Confidence            344555999999999999999999999999999999999 888888877

>PRK00090 bioD dithiobiotin synthetase; Reviewed

Probab=99.46  E-value=6e-13  Score=116.58  Aligned_cols=191  Identities=16%  Similarity=0.153  Sum_probs=110.5

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCcee
Q 047623           53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNFE  132 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~  132 (340)
                      |.|+|+..|+|||+++++|+..|+++|++|.++.-=.. +. ...  ..+.   +. ..+...........   ....+.
T Consensus         2 i~I~~t~t~~GKT~vs~~L~~~l~~~g~~v~~~KPv~~-g~-~~~--~~~~---d~-~~~~~~~~~~~~~~---~~~~~~   70 (222)
T PRK00090          2 LFVTGTDTDVGKTVVTAALAQALREAGYSVAGYKPVQS-GC-EET--DRNG---DA-LALQRLSGLPLDYE---DVNPYR   70 (222)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHHHHcCCceEEEeeEec-CC-CCC--CCcH---HH-HHHHHHcCCCCChh---hcCcee
Confidence            68899999999999999999999999999988642111 10 000  0000   00 11111001000000   000111


Q ss_pred             Ee-ecCCCCCC--CCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHH------HHHH-hcCCeEEEEeCCChhh
Q 047623          133 LL-CISKPRSK--LPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGF------ITAI-TPANEAVLVTTPDITS  202 (340)
Q Consensus       133 ~l-~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~------~~~l-~~ad~viiv~~~~~~s  202 (340)
                      +- |..+....  .......   ..+.+.+.+ +.++||+||||+++++....      ...+ ..-.-+++|+.++..+
T Consensus        71 ~~~~~sp~~a~~~~~~~~~~---~~i~~~~~~-l~~~~D~viIEg~gg~~~~~~~~~~~adl~~~l~~pvilV~~~~~~~  146 (222)
T PRK00090         71 FEEPLSPHLAAALEGVAIDL---EKISAALRR-LAQQYDLVLVEGAGGLLVPLTEDLTLADLAKQLQLPVILVVGVKLGC  146 (222)
T ss_pred             eCCCCCHHHHHHHhCCCCCH---HHHHHHHHH-HHhhCCEEEEECCCceeccCCCCCcHHHHHHHhCCCEEEEECCCCcH
Confidence            10 00000000  0001122   333334332 33479999999998753221      1111 1233488999999999


Q ss_pred             HHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCC
Q 047623          203 LRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPED  259 (340)
Q Consensus       203 ~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d  259 (340)
                      +..+...++.++..+.+..++|+|+++++. ........+.+.+.++.++++.+|+-
T Consensus       147 i~~~~~~i~~l~~~~~~i~gvIlN~~~~~~-~~~~~~~~~~l~~~~gi~vlg~ip~~  202 (222)
T PRK00090        147 INHTLLTLEAIRARGLPLAGWVANGIPPEP-GLRHAENLATLERLLPAPLLGELPYL  202 (222)
T ss_pred             HHHHHHHHHHHHHCCCCeEEEEEccCCCcc-hhHHHHHHHHHHHHcCCCeEEecCCC
Confidence            999988888888888888899999998761 11122346678888999999999983

>PRK13886 conjugal transfer protein TraL; Provisional

Probab=99.44  E-value=6.8e-12  Score=109.51  Aligned_cols=50  Identities=26%  Similarity=0.349  Sum_probs=45.4

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhcc
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLL   98 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~   98 (340)
                      |++++.|.++|||+||||+|++||.+++++|.+|+++|+|+++++++.+.
T Consensus         1 m~~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~~~~~~~   50 (241)
T PRK13886          1 MAKIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNATFEGYK   50 (241)
T ss_pred             CCeEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCchhhhHH
Confidence            57899999999999999999999999999999999999999977665443

>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH)

Probab=99.43  E-value=8e-13  Score=103.27  Aligned_cols=110  Identities=27%  Similarity=0.207  Sum_probs=70.8

Q ss_pred             EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCcee-Ee
Q 047623           56 TSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNFE-LL  134 (340)
Q Consensus        56 ~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~-~l  134 (340)
                      ..+|||+||||++.++|.+++++|++|+++|+|+  +++...++.+..                         +... +.
T Consensus         4 ~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~--~~~~~~~~~~~~-------------------------~~~~~i~   56 (116)
T cd02034           4 ITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP--DDLPERLSVEVG-------------------------EIKLLLV   56 (116)
T ss_pred             EECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc--hhhHHHHhhccC-------------------------CceEEEE
Confidence            3479999999999999999999999999999998  232222222111                         1111 11


Q ss_pred             ecCCCCCCCCCCcch-hhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEE
Q 047623          135 CISKPRSKLPLGFGG-KALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLV  195 (340)
Q Consensus       135 ~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv  195 (340)
                      .+..........+.. .....++..+   ....|||+|+||+++++.....++..+|.+++|
T Consensus        57 ~g~~~~~~~g~~~~~n~~~~~~l~~~---~~~~~~~vivDt~ag~e~~~~~~~~~~d~vv~v  115 (116)
T cd02034          57 MGMGRPGGEGCYCPENALLNALLRHL---VLTRDEQVVVDTEAGLEHLGRGTAEGVDLLVVV  115 (116)
T ss_pred             ecccccCCCCCEehhhHHHHHHHHHe---EccCCCEEEEecHHHHHHHHhhccccCCEEEEe
Confidence            111111111111111 2334444443   244799999999999999999999999998886

CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=99.36  E-value=1.2e-11  Score=93.24  Aligned_cols=92  Identities=42%  Similarity=0.689  Sum_probs=76.7

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCcee
Q 047623           53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNFE  132 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~  132 (340)
                      +++. +++|+||||++.++|..+++.|++|+++|                                              
T Consensus         2 ~~~~-g~~G~Gktt~~~~l~~~l~~~g~~v~~~~----------------------------------------------   34 (99)
T cd01983           2 IVVT-GKGGVGKTTLAANLAAALAKRGKRVLLID----------------------------------------------   34 (99)
T ss_pred             EEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEC----------------------------------------------
Confidence            4455 55599999999999999999999999999                                              


Q ss_pred             EeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHH---HHHHhcCCeEEEEeCCChhhHHHHHHH
Q 047623          133 LLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGF---ITAITPANEAVLVTTPDITSLRDADRV  209 (340)
Q Consensus       133 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~---~~~l~~ad~viiv~~~~~~s~~~~~~~  209 (340)
                                                         |+||+|+++..+...   ...+..+|.+++|+.++..++....++
T Consensus        35 -----------------------------------d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~   79 (99)
T cd01983          35 -----------------------------------DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEALAVLGARRL   79 (99)
T ss_pred             -----------------------------------CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchhhHHHHHHH
Confidence                                               999999999987777   678889999999999999999999888


Q ss_pred             HHHHHh---cCCCceEEEEe
Q 047623          210 TGLLEC---DGIRDIKMVVN  226 (340)
Q Consensus       210 ~~~l~~---~~~~~~~vviN  226 (340)
                      .+....   .+....++++|
T Consensus        80 ~~~~~~~~~~~~~~~~vv~N   99 (99)
T cd01983          80 TEVVLELAIEGLRPVGVVVN   99 (99)
T ss_pred             HHHHHHhhccCCceEEEEeC
Confidence            654433   23345666665

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=99.36  E-value=5.1e-11  Score=100.22  Aligned_cols=160  Identities=18%  Similarity=0.213  Sum_probs=94.1

Q ss_pred             EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCceeEe
Q 047623           55 ITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNFELL  134 (340)
Q Consensus        55 v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~l  134 (340)
                      +..++.|+||||++.++|..+++.|.+|+++|+|...+.....+....           .             ..++.++
T Consensus         4 ~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~-----------~-------------~~~~~~~   59 (173)
T cd03115           4 LLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLG-----------E-------------QVGVPVF   59 (173)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhc-----------c-------------cCCeEEE
Confidence            334899999999999999999999999999999987444332221100           0             0233333


Q ss_pred             ecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCC--HHHHHHH------hcCCeEEEEeCCChhhHHHH
Q 047623          135 CISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGID--AGFITAI------TPANEAVLVTTPDITSLRDA  206 (340)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~--~~~~~~l------~~ad~viiv~~~~~~s~~~~  206 (340)
                      +....       .+...  .+.+.+......+||+||||+++...  ......+      ...|.+++|+++.. .-+..
T Consensus        60 ~~~~~-------~~~~~--~~~~~~~~~~~~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~-~~~~~  129 (173)
T cd03115          60 EEGEG-------KDPVS--IAKRAIEHAREENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMT-GQDAV  129 (173)
T ss_pred             ecCCC-------CCHHH--HHHHHHHHHHhCCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCC-ChHHH
Confidence            32111       01111  11122222223479999999999753  2222111      24888899998742 23333


Q ss_pred             HHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeE
Q 047623          207 DRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLG  254 (340)
Q Consensus       207 ~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~  254 (340)
                      ....+..+..+  ..++|+|+++.....    .....+...++.|+..
T Consensus       130 ~~~~~~~~~~~--~~~viltk~D~~~~~----g~~~~~~~~~~~p~~~  171 (173)
T cd03115         130 NQAKAFNEALG--ITGVILTKLDGDARG----GAALSIRAVTGKPIKF  171 (173)
T ss_pred             HHHHHHHhhCC--CCEEEEECCcCCCCc----chhhhhHHHHCcCeEe
Confidence            33333333334  578999999876522    2334577888887753

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK13768 GTPase; Provisional

Probab=99.34  E-value=2.9e-11  Score=107.78  Aligned_cols=161  Identities=16%  Similarity=0.143  Sum_probs=90.3

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccccc
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRW  128 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  128 (340)
                      |++++.|. ++||+||||++.+++.++++.|++|++||+|++...+..    .+  ..++.+++    ...+.+......
T Consensus         1 ~~~~i~v~-G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~~~~~~~----~~--~~~i~~~~----~~~~v~~~~~l~   69 (253)
T PRK13768          1 MMYIVFFL-GTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPAVEYLPY----TP--DFDVRDYV----TAREIMKKYGLG   69 (253)
T ss_pred             CcEEEEEE-CCCCccHHHHHHHHHHHHHhcCCceEEEECCCccccCCC----CC--Ccchhhhe----eHHHHHHHcCCC
Confidence            56677777 559999999999999999999999999999998444322    11  12333332    111111111111


Q ss_pred             CceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHH-----HH---HHHhc--CCeEEEEeCC
Q 047623          129 SNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAG-----FI---TAITP--ANEAVLVTTP  198 (340)
Q Consensus       129 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~-----~~---~~l~~--ad~viiv~~~  198 (340)
                      ++..++.+.        ........++.+.+...   ..|++|+|+|+.....     ..   ..+..  ++.++.+++.
T Consensus        70 p~~~~~~~~--------~~~~~~~~~l~~~l~~~---~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~  138 (253)
T PRK13768         70 PNGALIASV--------DLLLTKADEIKEEIESL---DADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDA  138 (253)
T ss_pred             CchHHHHHH--------HHHHHHHHHHHHHHHhc---CCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEech
Confidence            332222111        12234455666666553   5799999999954322     11   22222  7888888887


Q ss_pred             Chhh----HHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          199 DITS----LRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       199 ~~~s----~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      ....    ......+.............+|+|+.+.-
T Consensus       139 ~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~  175 (253)
T PRK13768        139 VLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLL  175 (253)
T ss_pred             HHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhc
Confidence            4322    22221111111111224677899999864

>PRK12374 putative dithiobiotin synthetase; Provisional

Probab=99.33  E-value=3.8e-11  Score=105.77  Aligned_cols=195  Identities=17%  Similarity=0.179  Sum_probs=117.1

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhc-cCCcCCCcccHHHhhcCCCccccceecccc
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLL-LGLENRVNYTVVEVLNGDCRLDQALVRDKR  127 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  127 (340)
                      |++.|.|+++..|+|||+++..|+..|.++|.+|..+.-=.+  +.... -+..+.    -..++.........      
T Consensus         1 m~~~ifIt~t~t~vGKT~vt~~L~~~l~~~g~~v~~~KPi~~--g~~~~~~~~~~~----D~~~l~~~~~~~~~------   68 (231)
T PRK12374          1 MLKRFFITGTDTSVGKTVVSRALLQALASQGKTVAGYKPVAK--GSKETPEGLRNK----DALVLQSVSSIELP------   68 (231)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEECcccc--CCccCCCCCchH----HHHHHHHhcCCCCC------
Confidence            456899999999999999999999999999999999743322  11100 001110    01111111111100      


Q ss_pred             cCceeEeecCCCCC--CCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHH------HHHHH-hcCCeEEEEeCC
Q 047623          128 WSNFELLCISKPRS--KLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAG------FITAI-TPANEAVLVTTP  198 (340)
Q Consensus       128 ~~~l~~l~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~------~~~~l-~~ad~viiv~~~  198 (340)
                      .+.+..++......  .......   ...+.+.+.+ ++++||+||||+++++...      ..... ..---+++|+..
T Consensus        69 ~~~~~p~~~~~~~a~~~~~~~i~---~~~i~~~~~~-l~~~~D~VlVEGaGgl~~p~~~~~~~~d~~~~~~~pvilV~~~  144 (231)
T PRK12374         69 YEAVNPIALSEEESSVAHSCPIN---YTLMSNGLAN-LSEKVDHVVVEGTGGWRSLMNDLRPLSEWVVQEQLPVLMVVGI  144 (231)
T ss_pred             HHhccCeecCCCcChHHcCCcCC---HHHHHHHHHH-HHhhCCEEEEECCCCcceeccCcccHHHHHHHhCCCEEEEECC
Confidence            01111111111111  0111111   1334444433 3458999999999854221      11222 223347888888


Q ss_pred             ChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChH
Q 047623          199 DITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSE  261 (340)
Q Consensus       199 ~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~  261 (340)
                      ...++..+.-..+.+...+....++|+|++++....  .....+.+.+..+.++++.||+.+.
T Consensus       145 ~lg~in~~lLt~~~l~~~~~~~~gvV~N~~~~~~~~--~~~~~~~l~~~~~~~~lg~iP~~~~  205 (231)
T PRK12374        145 QEGCINHALLTAQAIANDGLPLIGWVANRINPGLAH--YAEIIDVLGKKLPAPLIGELPYLPR  205 (231)
T ss_pred             CcChHHHHHHHHHHHHhCCCcEEEEEEeCccCchhh--hhhHHHHHHHhcCCCEEEEeCCCCC
Confidence            888899999999999998999999999999875422  2223566777788999999998654

>PRK10867 signal recognition particle protein; Provisional

Probab=99.32  E-value=9.5e-11  Score=111.23  Aligned_cols=164  Identities=19%  Similarity=0.236  Sum_probs=98.5

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccc
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARL-GFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDK  126 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~-g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  126 (340)
                      ....+|.++ +..|+||||++++||.+++++ |++|++||+|.+.+.....+..       +    ..            
T Consensus        98 ~~p~vI~~v-G~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~-------~----a~------------  153 (433)
T PRK10867         98 KPPTVIMMV-GLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKT-------L----GE------------  153 (433)
T ss_pred             CCCEEEEEE-CCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHH-------H----Hh------------
Confidence            335666666 799999999999999999998 9999999999974443222100       0    00            


Q ss_pred             ccCceeEeecCCCCCCCCCCcchhhH-HHHHHHHHHhccCCCCEEEEcCCCCC--CHHHHHH------HhcCCeEEEEeC
Q 047623          127 RWSNFELLCISKPRSKLPLGFGGKAL-TWVVEALKSRQEGSPDFILIDCPAGI--DAGFITA------ITPANEAVLVTT  197 (340)
Q Consensus       127 ~~~~l~~l~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~D~VIiD~~~~~--~~~~~~~------l~~ad~viiv~~  197 (340)
                       ..++.+++.+..       .++..+ ...++...   ...||+|||||++..  +......      ....+.+++|++
T Consensus       154 -~~gv~v~~~~~~-------~dp~~i~~~a~~~a~---~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVld  222 (433)
T PRK10867        154 -QIGVPVFPSGDG-------QDPVDIAKAALEEAK---ENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVD  222 (433)
T ss_pred             -hcCCeEEecCCC-------CCHHHHHHHHHHHHH---hcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEe
Confidence             023333322211       111221 22333332   247999999999965  2222221      124678888888


Q ss_pred             CChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623          198 PDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL  253 (340)
Q Consensus       198 ~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~  253 (340)
                      ...  -..+....+.+.. .....++|+|+.+.+....    .+..+...++.|+.
T Consensus       223 a~~--gq~av~~a~~F~~-~~~i~giIlTKlD~~~rgG----~alsi~~~~~~PI~  271 (433)
T PRK10867        223 AMT--GQDAVNTAKAFNE-ALGLTGVILTKLDGDARGG----AALSIRAVTGKPIK  271 (433)
T ss_pred             ccc--HHHHHHHHHHHHh-hCCCCEEEEeCccCccccc----HHHHHHHHHCcCEE
Confidence            643  1333333333332 3456799999999765322    25577788888866

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=99.32  E-value=2.1e-10  Score=105.29  Aligned_cols=165  Identities=15%  Similarity=0.202  Sum_probs=96.7

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccc
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKR  127 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  127 (340)
                      +.+.+|+++| ..|+||||++++||..++..|.+|+++|+|.+.......+.       ...                 .
T Consensus       112 ~~~~vi~lvG-pnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~-------~~a-----------------~  166 (318)
T PRK10416        112 KKPFVILVVG-VNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQ-------VWG-----------------E  166 (318)
T ss_pred             CCCeEEEEEC-CCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHH-------HHH-----------------H
Confidence            4568999995 88899999999999999999999999999986332110000       000                 0


Q ss_pred             cCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCC--HH----HHHHH--------hcCCeEE
Q 047623          128 WSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGID--AG----FITAI--------TPANEAV  193 (340)
Q Consensus       128 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~--~~----~~~~l--------~~ad~vi  193 (340)
                      ..++.+++.....       .+.  ....+.+......+||+|||||+|...  ..    ...+.        ...+.++
T Consensus       167 ~~~i~~~~~~~~~-------dpa--~~v~~~l~~~~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~  237 (318)
T PRK10416        167 RVGVPVIAQKEGA-------DPA--SVAFDAIQAAKARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVL  237 (318)
T ss_pred             HcCceEEEeCCCC-------CHH--HHHHHHHHHHHhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEE
Confidence            0223333322111       010  112222222223479999999999653  11    11111        1366778


Q ss_pred             EEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623          194 LVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL  253 (340)
Q Consensus       194 iv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~  253 (340)
                      +|+.... .-..+.+...+.+.  ....++|+|+.+.....    -....+...++.|+.
T Consensus       238 LVl~a~~-g~~~~~~a~~f~~~--~~~~giIlTKlD~t~~~----G~~l~~~~~~~~Pi~  290 (318)
T PRK10416        238 LVLDATT-GQNALSQAKAFHEA--VGLTGIILTKLDGTAKG----GVVFAIADELGIPIK  290 (318)
T ss_pred             EEEECCC-ChHHHHHHHHHHhh--CCCCEEEEECCCCCCCc----cHHHHHHHHHCCCEE
Confidence            8887763 33444444333322  35678999999976532    234456677788776

>TIGR00959 ffh signal recognition particle protein

Probab=99.30  E-value=1.2e-10  Score=110.52  Aligned_cols=162  Identities=19%  Similarity=0.253  Sum_probs=95.7

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLA-RLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWS  129 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la-~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  129 (340)
                      +.+.++.+..|+||||++++||.+++ +.|++|++||+|.+.+.....+..          + ...             .
T Consensus        99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~----------~-a~~-------------~  154 (428)
T TIGR00959        99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKV----------L-GQQ-------------V  154 (428)
T ss_pred             CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHH----------H-HHh-------------c
Confidence            45555668999999999999999987 679999999999874443221100          0 000             1


Q ss_pred             ceeEeecCCCCCCCCCCcchhh-HHHHHHHHHHhccCCCCEEEEcCCCCC--CHHHHHH------HhcCCeEEEEeCCCh
Q 047623          130 NFELLCISKPRSKLPLGFGGKA-LTWVVEALKSRQEGSPDFILIDCPAGI--DAGFITA------ITPANEAVLVTTPDI  200 (340)
Q Consensus       130 ~l~~l~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~D~VIiD~~~~~--~~~~~~~------l~~ad~viiv~~~~~  200 (340)
                      ++.++.....       ..+.. ....++.+.   ...||+|||||++..  +......      ....|.+++|+....
T Consensus       155 gvp~~~~~~~-------~~P~~i~~~al~~~~---~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~t  224 (428)
T TIGR00959       155 GVPVFALGKG-------QSPVEIARRALEYAK---ENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMT  224 (428)
T ss_pred             CCceEecCCC-------CCHHHHHHHHHHHHH---hcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccc
Confidence            1112211110       01111 122333332   347999999999964  2322222      234788888888642


Q ss_pred             hhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623          201 TSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL  253 (340)
Q Consensus       201 ~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~  253 (340)
                        -..+....+.+.. .+...++|+|+.+.+....    .+..+...++.|+.
T Consensus       225 --gq~~~~~a~~f~~-~v~i~giIlTKlD~~~~~G----~~lsi~~~~~~PI~  270 (428)
T TIGR00959       225 --GQDAVNTAKTFNE-RLGLTGVVLTKLDGDARGG----AALSVRSVTGKPIK  270 (428)
T ss_pred             --hHHHHHHHHHHHh-hCCCCEEEEeCccCccccc----HHHHHHHHHCcCEE
Confidence              2344444444432 3456799999998765222    35677788888876

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]

Probab=99.30  E-value=3.5e-11  Score=102.97  Aligned_cols=178  Identities=19%  Similarity=0.201  Sum_probs=104.6

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCc----CCCcccHHHhhcCCCccccceecc
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLE----NRVNYTVVEVLNGDCRLDQALVRD  125 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~----~~~~~~l~~~l~~~~~~~~~~~~~  125 (340)
                      ...-.|.|+||||||||.+++||..+|.-+.+||+|..||. .+++-.|+.+    +....+..+++.-+.+.+..+..-
T Consensus        18 slKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPA-HNlSDAF~qkftk~pt~V~Gf~nLfAMEIDp~~e~~~~   96 (323)
T KOG2825|consen   18 SLKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPA-HNLSDAFSQKFTKTPTKVEGFENLFAMEIDPNVEMGDM   96 (323)
T ss_pred             eeeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCcc-cchHHHHHHHhcCCCccccChhhheeeecCCchhhhhh
Confidence            34556778999999999999999999999999999999998 6665555322    222233333332221111100000


Q ss_pred             ccc----CceeEeecCCCCCCCCCC---cc-hhhHHHHHHHHHHhccCCCCEEEEcCCCCCCH-----------------
Q 047623          126 KRW----SNFELLCISKPRSKLPLG---FG-GKALTWVVEALKSRQEGSPDFILIDCPAGIDA-----------------  180 (340)
Q Consensus       126 ~~~----~~l~~l~~~~~~~~~~~~---~~-~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~-----------------  180 (340)
                      ...    .+-...-+..-.......   ++ .-.+..+++.++..   +||.||+||+|.--.                 
T Consensus        97 ~~m~~~~~~n~~~~g~g~l~e~~~~~Pgideamsfae~~klvk~~---~F~~vVFDTAPTGHTLRlL~fP~~lek~lgKl  173 (323)
T KOG2825|consen   97 PEMFGNAANNEGSDGKGMLQELANAFPGIDEAMSFAEVMKLVKGM---NFDVVVFDTAPTGHTLRLLQFPTTLEKGLGKL  173 (323)
T ss_pred             HHHhhcccccccccchhHHHHHHhcCCChhHHHhHHHHHHHhhcc---ccceEEeccCCCcceehhhccchHHHHHHHHH
Confidence            000    000000000000000000   00 11234445555553   799999999993100                 


Q ss_pred             --------HHH-------------------------HH-------Hh--cCCeEEEEeCCChhhHHHHHHHHHHHHhcCC
Q 047623          181 --------GFI-------------------------TA-------IT--PANEAVLVTTPDITSLRDADRVTGLLECDGI  218 (340)
Q Consensus       181 --------~~~-------------------------~~-------l~--~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~  218 (340)
                              ...                         ..       +.  .+...++|+-++..|+..+.|+++.+...++
T Consensus       174 ~~l~~k~~pm~sq~~sm~g~~~~~~~~l~~kle~~~~~i~~vn~qFkdpd~TtFVcVcI~eflslyEteRliqeL~k~~i  253 (323)
T KOG2825|consen  174 LSLKNKIGPMLSQMGSMFGMEDAGADDLAGKLEELLEVIEKVNEQFKDPDCTTFVCVCIAEFLSLYETERLIQELAKQGI  253 (323)
T ss_pred             HHHHHHHHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEHHHHHhHHHHHHHHHHHHhcCC
Confidence                    000                         00       00  2366899999999999999999999999999


Q ss_pred             CceEEEEecccCC
Q 047623          219 RDIKMVVNRVRTD  231 (340)
Q Consensus       219 ~~~~vviN~~~~~  231 (340)
                      +.-.+|+|+.-..
T Consensus       254 dthnIIVNQLL~~  266 (323)
T KOG2825|consen  254 DTHNIIVNQLLFP  266 (323)
T ss_pred             cccceeeeeccCC
Confidence            9889999996543

>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]

Probab=99.30  E-value=3.6e-11  Score=103.58  Aligned_cols=198  Identities=19%  Similarity=0.188  Sum_probs=124.0

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccccc
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRW  128 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  128 (340)
                      |++.+.|+|+--|||||++++.|++++.++|++|....-=.. +.-....   +.+    ...+......... +   ..
T Consensus         1 m~~~~fVtGTDT~VGKTv~S~aL~~~l~~~g~~~~~~KPVqs-G~~~~~~---~~D----~~~l~~~~~~~~~-~---~~   68 (223)
T COG0132           1 MMKRFFVTGTDTGVGKTVVSAALAQALKQQGYSVAGYKPVQT-GSEETAE---NSD----ALVLQRLSGLDLS-Y---EL   68 (223)
T ss_pred             CCceEEEEeCCCCccHHHHHHHHHHHHHhCCCeeEEECceee-CCCCCCC---Cch----HHHHHHhcCCCcc-c---cc
Confidence            578999999999999999999999999999999988643222 1111000   010    0111111111100 0   00


Q ss_pred             CceeEe--ecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHH------HHHHH-hcCCeEEEEeCCC
Q 047623          129 SNFELL--CISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAG------FITAI-TPANEAVLVTTPD  199 (340)
Q Consensus       129 ~~l~~l--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~------~~~~l-~~ad~viiv~~~~  199 (340)
                      .+.+.+  |.++........ ..-+...+...+.+. ..+||+|+|..++++..+      +...+ ...--+|+|+...
T Consensus        69 ~~py~f~~P~sPhlAa~~eg-~~I~~~~l~~~l~~l-~~~~d~vlVEGAGGl~vPl~~~~~~~D~~~~~~lpvILV~~~~  146 (223)
T COG0132          69 INPYRFKEPLSPHLAAELEG-RTIDLEKLSQGLRQL-LKKYDLVLVEGAGGLLVPLTEEYTFADLAVQLQLPVILVVGIK  146 (223)
T ss_pred             ccceecCCCCCcHHHHhhcC-CcccHHHHHHHHHhh-hcccCEEEEeCCCceeeecCCcccHHHHHHHcCCCEEEEecCC
Confidence            111111  222222111110 112334445544443 338999999999986332      22222 2244599999999


Q ss_pred             hhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHH
Q 047623          200 ITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEV  262 (340)
Q Consensus       200 ~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~  262 (340)
                      ..+++++.-..+.++..+++..++|+|++++.......  ....+.+.++.++.+.+|+.++.
T Consensus       147 LGtINHtlLt~eal~~~gl~l~G~I~n~~~~~~~~~~~--~~~~l~~~~~~p~~g~~p~~~~~  207 (223)
T COG0132         147 LGTINHTLLTVEALRARGLPLAGWVANGINPELDHYAE--INATLLKRIGAPLLGIIPYLPES  207 (223)
T ss_pred             ccHHHHHHHHHHHHHHCCCCEEEEEEccCCCchhHHHH--HHHHHHHhcCCCccccccCCccc
Confidence            99999999999999999999999999999887532222  23357888999999999987664

>TIGR00347 bioD dethiobiotin synthase

Probab=99.28  E-value=9.6e-11  Score=97.83  Aligned_cols=157  Identities=17%  Similarity=0.165  Sum_probs=90.3

Q ss_pred             EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCceeE-
Q 047623           55 ITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNFEL-  133 (340)
Q Consensus        55 v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~-  133 (340)
                      |++..+|+||||+|.+||..|+++|++|.+++-..+...     .. +.+...+.+.+....+....       ..+.. 
T Consensus         2 I~~t~~~~GKT~va~~L~~~l~~~g~~V~~~kP~~~~~~-----~~-d~d~~~i~~~~~~~~~~~~~-------~~~~~~   68 (166)
T TIGR00347         2 VTGTDTGVGKTVASSALAAKLKKAGYSVGYYKPVQTGIE-----KT-NSDALLLQNISGTALDWDEV-------NPYAFA   68 (166)
T ss_pred             eecCCCCccHHHHHHHHHHHHHHCCCcEEEEEeeeeCCC-----CC-chHHHHHHHHcCCCCchhcc-------CCeeeC
Confidence            688999999999999999999999999999754433100     00 00000011111111111110       00000 


Q ss_pred             eecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCH------HHHHHH-hcCCeEEEEeCCChhhHHHH
Q 047623          134 LCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDA------GFITAI-TPANEAVLVTTPDITSLRDA  206 (340)
Q Consensus       134 l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~------~~~~~l-~~ad~viiv~~~~~~s~~~~  206 (340)
                      .+..+....... -.......+.+.+.+ ++++||+||||++++...      .....+ ...+.+|+|+.++..+++.+
T Consensus        69 ~~~~p~~~~~~~-~~~~~~~~i~~~~~~-l~~~~D~viid~~g~~~~~~~~~~~~~dl~~~~~~~vilV~~~~~~~~~~~  146 (166)
T TIGR00347        69 LPLSPHIAADQE-GRPIDLEELSKHLRT-LEQKYDFVLVEGAGGLCVPITEEYTTADLIKLLQLPVILVVRVKLGTINHT  146 (166)
T ss_pred             CCCChHHHHHHh-CCCCCHHHHHHHHHH-HHhcCCEEEEEcCCccccCCCCCCcHHHHHHHhCCCEEEEECCCCcHHHHH
Confidence            000000000000 001112233333333 334799999999986431      122222 33667899999999999999


Q ss_pred             HHHHHHHHhcCCCceEEEEe
Q 047623          207 DRVTGLLECDGIRDIKMVVN  226 (340)
Q Consensus       207 ~~~~~~l~~~~~~~~~vviN  226 (340)
                      ....+.+++.+.+..++|+|
T Consensus       147 ~~~~~~l~~~~~~i~gvv~N  166 (166)
T TIGR00347       147 LLTVEHARQTGLTLAGVILN  166 (166)
T ss_pred             HHHHHHHHHCCCCeEEEEeC
Confidence            99999999999999999998

Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=99.25  E-value=3.6e-10  Score=107.52  Aligned_cols=183  Identities=18%  Similarity=0.177  Sum_probs=106.2

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccc
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKR  127 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  127 (340)
                      ..+.+|.++ +..|+||||++++||.++.+.|++|++||+|...+.....+.       .+.+.                
T Consensus        93 ~~p~vI~lv-G~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~-------~la~~----------------  148 (437)
T PRK00771         93 LKPQTIMLV-GLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLK-------QLAEK----------------  148 (437)
T ss_pred             CCCeEEEEE-CCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHH-------HHHHH----------------
Confidence            345677777 689999999999999999999999999999987443211110       00000                


Q ss_pred             cCceeEeecCCCCCCCCCCcch-hhHHHHHHHHHHhccCCCCEEEEcCCCCCCH--HH------HHHHhcCCeEEEEeCC
Q 047623          128 WSNFELLCISKPRSKLPLGFGG-KALTWVVEALKSRQEGSPDFILIDCPAGIDA--GF------ITAITPANEAVLVTTP  198 (340)
Q Consensus       128 ~~~l~~l~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~--~~------~~~l~~ad~viiv~~~  198 (340)
                       -++.+......       .+. ......++.+.     .+|+|||||+|....  ..      ...+..+|.+++|+.+
T Consensus       149 -~gvp~~~~~~~-------~d~~~i~~~al~~~~-----~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda  215 (437)
T PRK00771        149 -IGVPFYGDPDN-------KDAVEIAKEGLEKFK-----KADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDA  215 (437)
T ss_pred             -cCCcEEecCCc-------cCHHHHHHHHHHHhh-----cCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEec
Confidence             01111110000       011 11223333333     379999999996532  11      2234568999999988


Q ss_pred             ChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeE---------EecCChH-H-HHHHh
Q 047623          199 DITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLG---------VIPEDSE-V-IRSTN  267 (340)
Q Consensus       199 ~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~---------~Ip~d~~-~-~~a~~  267 (340)
                      ...  ..+....+.+.. ..+..++|+|+++.+....    .+..+...++.|+..         .-|+++. + ...+.
T Consensus       216 ~~g--q~av~~a~~F~~-~l~i~gvIlTKlD~~a~~G----~~ls~~~~~~~Pi~fig~Ge~v~Dle~f~~~~~~~~ilg  288 (437)
T PRK00771        216 TIG--QQAKNQAKAFHE-AVGIGGIIITKLDGTAKGG----GALSAVAETGAPIKFIGTGEKIDDLERFDPDRFISRLLG  288 (437)
T ss_pred             ccc--HHHHHHHHHHHh-cCCCCEEEEecccCCCccc----HHHHHHHHHCcCEEEEecCCCcccCCcCCHHHHHHHHhC
Confidence            654  222223333322 2456799999999876332    344677778877652         1355555 3 35555


Q ss_pred             cCCceEe
Q 047623          268 RGYPLVL  274 (340)
Q Consensus       268 ~g~~v~~  274 (340)
                      .|.....
T Consensus       289 mgd~~~l  295 (437)
T PRK00771        289 MGDLESL  295 (437)
T ss_pred             CCChHHH
Confidence            5665443

>PRK01077 cobyrinic acid a,c-diamide synthase; Validated

Probab=99.24  E-value=2.3e-10  Score=110.43  Aligned_cols=170  Identities=19%  Similarity=0.205  Sum_probs=101.3

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWS  129 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  129 (340)
                      |+.|.|+|+++|+||||+++.|+.+|+++|++|..+..+++..+..            +.....+...           .
T Consensus         3 m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~Gpd~~d~~------------~~~~~~g~~~-----------~   59 (451)
T PRK01077          3 MPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKVGPDYIDPA------------YHTAATGRPS-----------R   59 (451)
T ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeecCCCcccHH------------HHHHHhCCCc-----------c
Confidence            5789999999999999999999999999999999998865421111            1111111100           1


Q ss_pred             ceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCH---------HHHHHH--hcCCeEEEEeCC
Q 047623          130 NFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDA---------GFITAI--TPANEAVLVTTP  198 (340)
Q Consensus       130 ~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~---------~~~~~l--~~ad~viiv~~~  198 (340)
                      +++..           ....+.+...++.+    ..+||++||+...++..         ......  ..+. +|+|+..
T Consensus        60 ~ld~~-----------~~~~~~v~~~~~~~----~~~~D~vlVEGagGl~~g~~~~~~~~s~adiA~~l~~p-viLV~~~  123 (451)
T PRK01077         60 NLDSW-----------MMGEELVRALFARA----AQGADIAVIEGVMGLFDGAGSDPDEGSTADIAKLLGAP-VVLVVDA  123 (451)
T ss_pred             cCCce-----------eCCHHHHHHHHHHh----cccCCEEEEECCCccccCCccCCCCCCHHHHHHHhCCC-EEEEECC
Confidence            11110           01223333333333    34799999988854421         122222  3344 6666766


Q ss_pred             ChhhHHH--HHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHH
Q 047623          199 DITSLRD--ADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVI  263 (340)
Q Consensus       199 ~~~s~~~--~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~  263 (340)
                      +..+...  +...+..+ ..+.+..++|+|++.+..    ......+..+..|.+++++||+++.+.
T Consensus       124 ~~~~~~~a~l~~~~~~~-~~~i~i~GvI~N~v~~~~----~~~~l~~~l~~~gipvLG~IP~~~~l~  185 (451)
T PRK01077        124 SGMAQSAAALVLGFATF-DPDVRIAGVILNRVGSER----HYQLLREALERCGIPVLGALPRDAALA  185 (451)
T ss_pred             chHHHHHHHHHHHHHHh-CCCCCEEEEEEECCCChh----HHHHHHHHHHhcCCCEEEEeeCCcccC
Confidence            6544322  22222222 236688999999997542    111223444458999999999998864

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=99.23  E-value=7.5e-10  Score=104.58  Aligned_cols=165  Identities=14%  Similarity=0.183  Sum_probs=94.8

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccc
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKR  127 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  127 (340)
                      ..+.+|+++ +..|+||||++++||.+++++|++|+++++|.+.++....+.....           .            
T Consensus        98 ~~~~vi~lv-G~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~-----------~------------  153 (429)
T TIGR01425        98 GKQNVIMFV-GLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNAT-----------K------------  153 (429)
T ss_pred             CCCeEEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhh-----------c------------
Confidence            345778877 5899999999999999999999999999999985443322210000           0            


Q ss_pred             cCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCH--HHHHHH------hcCCeEEEEeCCC
Q 047623          128 WSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDA--GFITAI------TPANEAVLVTTPD  199 (340)
Q Consensus       128 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~--~~~~~l------~~ad~viiv~~~~  199 (340)
                       .++.+......         .+......+.+.......||+|||||++....  ....-+      ...|.+++|+++.
T Consensus       154 -~~vp~~~~~~~---------~dp~~i~~~~l~~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~  223 (429)
T TIGR01425       154 -ARIPFYGSYTE---------SDPVKIASEGVEKFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGS  223 (429)
T ss_pred             -cCCeEEeecCC---------CCHHHHHHHHHHHHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccc
Confidence             11111111000         01111122222222224799999999996522  222211      2367889998874


Q ss_pred             hhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623          200 ITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL  253 (340)
Q Consensus       200 ~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~  253 (340)
                      ...  .+....+.+.+ ....-++|+|+.+.......    +..+...++.|+.
T Consensus       224 ~Gq--~a~~~a~~F~~-~~~~~g~IlTKlD~~argG~----aLs~~~~t~~PI~  270 (429)
T TIGR01425       224 IGQ--AAEAQAKAFKD-SVDVGSVIITKLDGHAKGGG----ALSAVAATKSPII  270 (429)
T ss_pred             cCh--hHHHHHHHHHh-ccCCcEEEEECccCCCCccH----HhhhHHHHCCCeE
Confidence            321  11222333332 24567899999998753322    3456677777755

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>TIGR00313 cobQ cobyric acid synthase CobQ

Probab=99.18  E-value=9.9e-10  Score=106.38  Aligned_cols=202  Identities=18%  Similarity=0.247  Sum_probs=107.5

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhh---c-CC---Cccccceecc
Q 047623           53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVL---N-GD---CRLDQALVRD  125 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l---~-~~---~~~~~~~~~~  125 (340)
                      |.|+|+..++|||++++.|+..|.++|++|..+..-..  ........+... .+-..++   . +.   ..+.....+.
T Consensus         1 ~~I~GT~t~vGKT~v~~~L~~~l~~~G~~v~~fKp~~~--~~~s~~~~~~~e-~~~a~~~qa~a~~~~~~~~~nPv~lk~   77 (475)
T TIGR00313         1 IMVVGTTSSAGKSTLTAGLCRILARRGYRVAPFKSQNM--SLNSFVTKEGGE-IAIAQATQALAAGIEPSVHMNPILLKP   77 (475)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEECCccc--ccCccccCCCch-hHHHHHHHHHhCCCCchhccCCEEeCc
Confidence            57899999999999999999999999999998755311  111111111000 1111111   1 11   1112222221


Q ss_pred             cccCceeEeecCCCCCCCCC--Cc---chhhHHHHHHHHHHhccCCCCEEEEcCCCCCCH----------HHHHHHhcCC
Q 047623          126 KRWSNFELLCISKPRSKLPL--GF---GGKALTWVVEALKSRQEGSPDFILIDCPAGIDA----------GFITAITPAN  190 (340)
Q Consensus       126 ~~~~~l~~l~~~~~~~~~~~--~~---~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~----------~~~~~l~~ad  190 (340)
                      .......++..+........  ..   ....+..+.+.+.+ +..+||+||||+++++..          ...+.+..++
T Consensus        78 ~~~~~s~~i~~g~~~~~~~a~~~~~~~~~~~~~~i~~~~~~-l~~~~D~vIIEGaGGl~~~~~~~~d~s~~~lA~~l~ap  156 (475)
T TIGR00313        78 KGNFTSQVIVHGRAVGDMNYQEYYKNKVDFFLKAIKESLEI-LAREYDYVVIEGAGSPAEINLLKRDLANMRIAELANAD  156 (475)
T ss_pred             CCCCcCcEEEcCcccCcCCHHHHhhhhhHHHHHHHHHHHHH-HHhcCCEEEEECCCCccccccCcCCchHHHHHHHhCCC
Confidence            10001122222221111100  00   01223444444433 345799999999986532          1122344567


Q ss_pred             eEEEEeCCChh-hHHHHHHHHHHHHhc-CCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChH
Q 047623          191 EAVLVTTPDIT-SLRDADRVTGLLECD-GIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSE  261 (340)
Q Consensus       191 ~viiv~~~~~~-s~~~~~~~~~~l~~~-~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~  261 (340)
                      . |+|+..+.. .+..+..+++.++.. +....++|+|++.++...  .....+.+++.+|.++++++|+++.
T Consensus       157 V-ILV~d~~~g~~~a~i~gt~~~l~~~~~~~i~GvIlNrv~~~~~~--~~~~~~~l~e~~gipvLG~ip~~~~  226 (475)
T TIGR00313       157 A-ILVADIDRGGVFASIYGTLKLLPENWRKLIKGIVINKFRGNVDV--LKSGIEKLEELTGIPVLGVLPYDEN  226 (475)
T ss_pred             E-EEEEeCCccHHHHHHHHHHHHhChhhcCceEEEEEeccCCcHHH--HHHHHHHHHHhhCCCEEEEecCCCc
Confidence            4 555666544 334555566665543 256789999999875311  1123456677789999999998753

>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A

Probab=99.17  E-value=3.4e-10  Score=97.42  Aligned_cols=185  Identities=21%  Similarity=0.257  Sum_probs=108.6

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCc
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSN  130 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  130 (340)
                      |.|.|+++..|+|||+++..|+.+|.++|.+|.++--=.+...       .+.+...+..+........          .
T Consensus         1 r~i~I~~t~t~vGKT~vslgL~~~l~~~g~~v~~~KPi~~~~~-------~d~d~~~~~~~~~~~~~~~----------~   63 (199)
T PF13500_consen    1 RTIFITGTDTGVGKTVVSLGLARALRRRGIKVGYFKPIQTGPE-------DDEDAELIRELFGLSEPPD----------D   63 (199)
T ss_dssp             -EEEEEESSSSSSHHHHHHHHHHHHHHTTSEEEEEEEEEESCC-------CSSHHHHHHHHCCTCCCHH----------H
T ss_pred             CEEEEEeCCCCCCHHHHHHHHHHHHHhCCCceEEEeeeEecCC-------CCchHHHHHHHhCCCcccc----------c
Confidence            5789999999999999999999999999999987654222111       0110011111111111100          0


Q ss_pred             eeEeecCCCCCC--CCC-CcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCH------HHHHHHh--cCCeEEEEeCCC
Q 047623          131 FELLCISKPRSK--LPL-GFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDA------GFITAIT--PANEAVLVTTPD  199 (340)
Q Consensus       131 l~~l~~~~~~~~--~~~-~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~------~~~~~l~--~ad~viiv~~~~  199 (340)
                      ...+........  ... .-....+.+++   .+.+.+++|++||++.++...      .......  .+ -+|+|+...
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---~~~l~~~~D~vlVEGag~~~~~~~~~~~n~dia~~L~a-~vIlV~~~~  139 (199)
T PF13500_consen   64 PSPYTFDEPASPHLAAELEGVDIDLERII---YKELAEEYDVVLVEGAGGLMVPIFSGDLNADIAKALGA-PVILVASGR  139 (199)
T ss_dssp             HECEEESSSS-HHHHHHHHT----HHHHH---HHHCHTTTCEEEEEESSSTTSECCTTEEHHHHHHHHT--EEEEEEESS
T ss_pred             ccccccCcccCHHHHhhccCCcccHHHHH---HHHHhhcCCEEEEeCCcccCcccccChHHHHHHHHcCC-CEEEEeCCC
Confidence            000000000000  000 00001122332   122445899999999986531      1222222  34 378888888


Q ss_pred             hhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHH
Q 047623          200 ITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVI  263 (340)
Q Consensus       200 ~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~  263 (340)
                      ..+++++...++.+...+.+..++|+|++...       ...+.+.+..+.++++.||+++.+.
T Consensus       140 ~g~i~~~l~~~~~~~~~g~~v~GvI~N~~~~~-------~~~~~l~~~~~i~vlg~iP~~~~L~  196 (199)
T PF13500_consen  140 LGTINHTLLTIEALKQRGIRVLGVILNRVPEP-------ENLEALREKSGIPVLGVIPEDPDLS  196 (199)
T ss_dssp             TTHHHHHHHHHHHHHCTTS-EEEEEEEECTCC-------HHHHHHHHHHCCEECE---SSTT--
T ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEEEECCCCH-------HHHHHHHHhCCCCEEEECCCCcccc
Confidence            89999999999999988999999999998665       2577888999999999999998864

...

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=99.15  E-value=3.1e-09  Score=98.13  Aligned_cols=162  Identities=17%  Similarity=0.176  Sum_probs=98.3

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccc
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKR  127 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  127 (340)
                      ...++++++|.+ |+||||++++||..+.++|++|++|++|++..+....+.          .+    ..          
T Consensus       204 ~~~~ii~lvGpt-GvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk----------~y----ae----------  258 (407)
T PRK12726        204 SNHRIISLIGQT-GVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQ----------GY----AD----------  258 (407)
T ss_pred             cCCeEEEEECCC-CCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHH----------HH----hh----------
Confidence            456899999875 999999999999999999999999999998443221110          00    00          


Q ss_pred             cCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCC--CHHHHHHH------hcCCeEEEEeCCC
Q 047623          128 WSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGI--DAGFITAI------TPANEAVLVTTPD  199 (340)
Q Consensus       128 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~--~~~~~~~l------~~ad~viiv~~~~  199 (340)
                      ..++.+...          .++..+...++.+..  ..+||+|||||++..  +.....-+      ...|.+++|..+.
T Consensus       259 ~lgvpv~~~----------~dp~dL~~al~~l~~--~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag  326 (407)
T PRK12726        259 KLDVELIVA----------TSPAELEEAVQYMTY--VNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG  326 (407)
T ss_pred             cCCCCEEec----------CCHHHHHHHHHHHHh--cCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc
Confidence            011111110          123444455555542  136999999999964  22222211      1346667776653


Q ss_pred             hhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623          200 ITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL  253 (340)
Q Consensus       200 ~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~  253 (340)
                      . ....+..+.+.+.  ....-++|+++.+...    ..-.+..+...++.|+.
T Consensus       327 ~-~~~d~~~i~~~f~--~l~i~glI~TKLDET~----~~G~~Lsv~~~tglPIs  373 (407)
T PRK12726        327 M-KSADVMTILPKLA--EIPIDGFIITKMDETT----RIGDLYTVMQETNLPVL  373 (407)
T ss_pred             c-cHHHHHHHHHhcC--cCCCCEEEEEcccCCC----CccHHHHHHHHHCCCEE
Confidence            3 2233334444333  3456789999999876    33345567778888876

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=99.12  E-value=5.2e-09  Score=96.99  Aligned_cols=168  Identities=18%  Similarity=0.201  Sum_probs=103.0

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCC-chhccCCcCCCcccHHHhhcCCCccccceecccc
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRN-LDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKR  127 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~-l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  127 (340)
                      ..++|++.|. +|+||||+++.||..+..+|++|+++++|.+... ...+-.        ..+                 
T Consensus       240 ~~~vI~LVGp-tGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~--------yae-----------------  293 (436)
T PRK11889        240 EVQTIALIGP-TGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQD--------YVK-----------------  293 (436)
T ss_pred             CCcEEEEECC-CCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHH--------Hhh-----------------
Confidence            3578888866 9999999999999999999999999999987321 111100        000                 


Q ss_pred             cCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCC--HHH----HHHHh--cCCeEEEEeCCC
Q 047623          128 WSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGID--AGF----ITAIT--PANEAVLVTTPD  199 (340)
Q Consensus       128 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~--~~~----~~~l~--~ad~viiv~~~~  199 (340)
                      ..++.+...          .++..+...++.+.+  ..+||+|||||++...  ...    ...+.  ..+.+++|+.+.
T Consensus       294 ~lgipv~v~----------~d~~~L~~aL~~lk~--~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsAT  361 (436)
T PRK11889        294 TIGFEVIAV----------RDEAAMTRALTYFKE--EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSAS  361 (436)
T ss_pred             hcCCcEEec----------CCHHHHHHHHHHHHh--ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCc
Confidence            012222211          123344445555543  1259999999999542  221    22222  356778887654


Q ss_pred             hhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeE-----EecCChH
Q 047623          200 ITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLG-----VIPEDSE  261 (340)
Q Consensus       200 ~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~-----~Ip~d~~  261 (340)
                      .. -+.+...++.+..  ...-++|+++.+...    ..-.+..+...++.|+..     .||+|-.
T Consensus       362 tk-~~d~~~i~~~F~~--~~idglI~TKLDET~----k~G~iLni~~~~~lPIsyit~GQ~VPeDI~  421 (436)
T PRK11889        362 MK-SKDMIEIITNFKD--IHIDGIVFTKFDETA----SSGELLKIPAVSSAPIVLMTDGQDVKKNIH  421 (436)
T ss_pred             cC-hHHHHHHHHHhcC--CCCCEEEEEcccCCC----CccHHHHHHHHHCcCEEEEeCCCCCCcchh
Confidence            32 2344455555554  456789999999876    233455677778888662     3666644

>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms

Probab=99.11  E-value=3.7e-09  Score=84.96  Aligned_cols=121  Identities=24%  Similarity=0.339  Sum_probs=93.3

Q ss_pred             CCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCceeEeecC
Q 047623           58 GKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNFELLCIS  137 (340)
Q Consensus        58 ~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~l~~~  137 (340)
                      ++| +|||+++..|+..|.++|.+|..++...+                                               
T Consensus         7 ~~~-~Gkt~~~~~l~~~l~~~~~~v~~~kp~~~-----------------------------------------------   38 (134)
T cd03109           7 GTD-IGKTVATAILARALKEKGYRVAPLKPVQT-----------------------------------------------   38 (134)
T ss_pred             CCC-cCHHHHHHHHHHHHHHCCCeEEEEecCCC-----------------------------------------------
Confidence            455 99999999999999999999999866643                                               


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCH------HHHHHHhcCC-eEEEEeCCChhhHHHHHHHH
Q 047623          138 KPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDA------GFITAITPAN-EAVLVTTPDITSLRDADRVT  210 (340)
Q Consensus       138 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~------~~~~~l~~ad-~viiv~~~~~~s~~~~~~~~  210 (340)
                                                   +|++||++++++..      .....+...+ -+++|++++..++..+...+
T Consensus        39 -----------------------------~d~vliEGaGg~~~p~~~~~~~~d~~~~~~~~vllV~~~~~g~i~~a~~~~   89 (134)
T cd03109          39 -----------------------------YDFVLVEGAGGLCVPLKEDFTNADVAKELNLPAILVTSAGLGSINHAFLTI   89 (134)
T ss_pred             -----------------------------CCEEEEECCCccccCCCCCCCHHHHHHHhCCCEEEEEcCCCCcHhHHHHHH
Confidence                                         57777777765421      1223333222 38899999989999999999


Q ss_pred             HHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEec
Q 047623          211 GLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIP  257 (340)
Q Consensus       211 ~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip  257 (340)
                      +.++..+....+++.|++......  ...+.+.+++.++.++++.||
T Consensus        90 ~~l~~~g~~i~gvi~N~~~~~~~~--~~~~~~~i~~~~gip~LG~IP  134 (134)
T cd03109          90 EAARIKGIILNGVLGNVIVEKEGL--ATLNVETIERLTGIPVLGIVP  134 (134)
T ss_pred             HHHHhcCCceeEEEEccCCCccch--hhhhHHHHHHhcCCCEEEeCC
Confidence            999999999999999998875421  114577889999999999987

The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.08  E-value=7.3e-09  Score=94.82  Aligned_cols=155  Identities=21%  Similarity=0.189  Sum_probs=92.0

Q ss_pred             CCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCch-hccCCcCCCcccHHHhhcCCCccccceec
Q 047623           46 AGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLD-LLLGLENRVNYTVVEVLNGDCRLDQALVR  124 (340)
Q Consensus        46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  124 (340)
                      ..+.+++|.|+ +.+|+||||++..|+..+.++|++|.+|++|++.+... .+++              ...++.+..  
T Consensus        30 ~~~~~~~i~i~-G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~--------------~~~~~~~~~--   92 (300)
T TIGR00750        30 YTGNAHRVGIT-GTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILG--------------DRTRMQRLA--   92 (300)
T ss_pred             ccCCceEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcc--------------cchhhhhcc--
Confidence            34567888888 88999999999999999999999999999999743221 1111              111111100  


Q ss_pred             ccccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHH
Q 047623          125 DKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLR  204 (340)
Q Consensus       125 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~  204 (340)
                        ..++..+.+.+......   ........+++.+..   .+||+|||||++ ........+..+|.++++..+..  -.
T Consensus        93 --~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~---~g~D~viidT~G-~~~~e~~i~~~aD~i~vv~~~~~--~~  161 (300)
T TIGR00750        93 --TDPGAFIRSMPTRGHLG---GLSQATRELILLLDA---AGYDVIIVETVG-VGQSEVDIANMADTFVVVTIPGT--GD  161 (300)
T ss_pred             --cCCCceeeecCcccccc---chhHHHHHHHHHHHh---CCCCEEEEeCCC-CchhhhHHHHhhceEEEEecCCc--cH
Confidence              01233332222211100   011233445555544   479999999996 34444567788999888875542  23


Q ss_pred             HHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          205 DADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       205 ~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      .+..+.+.+..   ....+++|+.+..
T Consensus       162 el~~~~~~l~~---~~~ivv~NK~Dl~  185 (300)
T TIGR00750       162 DLQGIKAGLME---IADIYVVNKADGE  185 (300)
T ss_pred             HHHHHHHHHhh---hccEEEEEccccc
Confidence            33333333322   1236999999864

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=99.07  E-value=5.6e-09  Score=99.61  Aligned_cols=157  Identities=22%  Similarity=0.203  Sum_probs=88.5

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHH--HCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccc
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLA--RLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKR  127 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la--~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  127 (340)
                      +++++|.|. +|+||||++++||..++  +.|++|++||+|++.......+       ....+.                
T Consensus       221 ~~~i~~vGp-tGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL-------~~~a~~----------------  276 (424)
T PRK05703        221 GGVVALVGP-TGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQL-------KTYAKI----------------  276 (424)
T ss_pred             CcEEEEECC-CCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHH-------HHHHHH----------------
Confidence            568888855 99999999999999998  4589999999998732111000       000000                


Q ss_pred             cCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCC--CH----HHHHHHhcCC---eEEEEeCC
Q 047623          128 WSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGI--DA----GFITAITPAN---EAVLVTTP  198 (340)
Q Consensus       128 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~--~~----~~~~~l~~ad---~viiv~~~  198 (340)
                       -++.+...          .....+...++.+.     .||+||||+++..  +.    .....+..++   .+++|+..
T Consensus       277 -~~vp~~~~----------~~~~~l~~~l~~~~-----~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a  340 (424)
T PRK05703        277 -MGIPVEVV----------YDPKELAKALEQLR-----DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSA  340 (424)
T ss_pred             -hCCceEcc----------CCHHhHHHHHHHhC-----CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEEC
Confidence             11111100          11122333333332     5999999999854  21    1223333222   34444443


Q ss_pred             ChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623          199 DITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL  253 (340)
Q Consensus       199 ~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~  253 (340)
                      . .....+.++.+.+...+  .-++|+++++...    ..-.+..+....+.++.
T Consensus       341 ~-~~~~~l~~~~~~f~~~~--~~~vI~TKlDet~----~~G~i~~~~~~~~lPv~  388 (424)
T PRK05703        341 T-TKYEDLKDIYKHFSRLP--LDGLIFTKLDETS----SLGSILSLLIESGLPIS  388 (424)
T ss_pred             C-CCHHHHHHHHHHhCCCC--CCEEEEecccccc----cccHHHHHHHHHCCCEE
Confidence            2 23344444555554433  3589999999865    22345566677777766

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=99.07  E-value=8e-09  Score=99.23  Aligned_cols=157  Identities=18%  Similarity=0.147  Sum_probs=91.1

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC--CCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecc
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARL--GFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRD  125 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~--g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  125 (340)
                      +.+++|+|+| .+|+||||++.+||..++++  |++|.++++|.+..+....+              .....        
T Consensus       348 ~~G~vIaLVG-PtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQL--------------k~ya~--------  404 (559)
T PRK12727        348 ERGGVIALVG-PTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQL--------------HSYGR--------  404 (559)
T ss_pred             cCCCEEEEEC-CCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHH--------------HHhhc--------
Confidence            4568999995 57999999999999998875  58999999998632211111              00000        


Q ss_pred             cccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCC--HHHH-------HHHhcCCeEEEEe
Q 047623          126 KRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGID--AGFI-------TAITPANEAVLVT  196 (340)
Q Consensus       126 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~--~~~~-------~~l~~ad~viiv~  196 (340)
                        .-++.+..          ......+...++.+.     +||+||||+++...  ....       ......+.++++.
T Consensus       405 --iLgv~v~~----------a~d~~~L~~aL~~l~-----~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpA  467 (559)
T PRK12727        405 --QLGIAVHE----------ADSAESLLDLLERLR-----DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPA  467 (559)
T ss_pred             --ccCceeEe----------cCcHHHHHHHHHHhc-----cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEEC
Confidence              01111110          011223344444443     59999999999542  1111       1123355666666


Q ss_pred             CCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623          197 TPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL  253 (340)
Q Consensus       197 ~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~  253 (340)
                      ......+.   .+++.+..  ....++|+|+++....    .-....+....++++.
T Consensus       468 tss~~Dl~---eii~~f~~--~~~~gvILTKlDEt~~----lG~aLsv~~~~~LPI~  515 (559)
T PRK12727        468 NAHFSDLD---EVVRRFAH--AKPQGVVLTKLDETGR----FGSALSVVVDHQMPIT  515 (559)
T ss_pred             CCChhHHH---HHHHHHHh--hCCeEEEEecCcCccc----hhHHHHHHHHhCCCEE
Confidence            65444444   44444443  2457899999988652    2234456666777665

>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]

Probab=99.04  E-value=1.8e-09  Score=99.99  Aligned_cols=176  Identities=22%  Similarity=0.270  Sum_probs=105.2

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCce
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNF  131 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l  131 (340)
                      .|.+.++..|+||||++..|..+|+++|.+|--+...|++-+-.++.-....+..+|..++-+                 
T Consensus         2 ~vvIAg~~SG~GKTTvT~glm~aL~~rg~~VqpfKvGPDYIDP~~H~~atG~~srNLD~~mm~-----------------   64 (451)
T COG1797           2 AVVIAGTSSGSGKTTVTLGLMRALRRRGLKVQPFKVGPDYIDPGYHTAATGRPSRNLDSWMMG-----------------   64 (451)
T ss_pred             ceEEecCCCCCcHHHHHHHHHHHHHhcCCcccccccCCCccCchhhhHhhCCccCCCchhhcC-----------------
Confidence            478899999999999999999999999999998888876544332222222222333222222                 


Q ss_pred             eEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCC-----------CHHHHHHHhcCCeEEEEeCCCh
Q 047623          132 ELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGI-----------DAGFITAITPANEAVLVTTPDI  200 (340)
Q Consensus       132 ~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~-----------~~~~~~~l~~ad~viiv~~~~~  200 (340)
                                       .+.+.++...-.+    +.|+.||..--++           +....+-+..+- ||+|++...
T Consensus        65 -----------------~~~v~~~f~~~~~----~adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l~~P-VvLVid~~~  122 (451)
T COG1797          65 -----------------EEGVRALFARAAA----DADIAVIEGVMGLFDGRGSATDTGSTADLAKLLGAP-VVLVVDASG  122 (451)
T ss_pred             -----------------HHHHHHHHHHhcC----CCCEEEEeeccccccCCCCCcCCCCHHHHHHHhCCC-EEEEEeCcc
Confidence                             2333333333322    4666666544322           122233333344 667777665


Q ss_pred             hhHHHHHHHHHHHHh-cCCCceEEEEecccCCcccccccccHHHHHH-HhCCceeEEecCChHHH-HHHhcCC
Q 047623          201 TSLRDADRVTGLLEC-DGIRDIKMVVNRVRTDMIKGEDMMSVLDIQE-MLGLALLGVIPEDSEVI-RSTNRGY  270 (340)
Q Consensus       201 ~s~~~~~~~~~~l~~-~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~-~~g~~v~~~Ip~d~~~~-~a~~~g~  270 (340)
                      .+-..+.-+.-+-.- .+++..|||+||+.++.    +..-.++..+ .++++++++||+++.+. .....|.
T Consensus       123 ~s~S~AAiv~G~~~fdp~v~iaGVIlNrVgser----H~~llr~Ale~~~gv~vlG~lpr~~~l~lp~RHLGL  191 (451)
T COG1797         123 LSRSVAAIVKGFKHFDPDVNIAGVILNRVGSER----HYELLRDALEEYTGVPVLGYLPRDDDLELPSRHLGL  191 (451)
T ss_pred             hhHHHHHHHHHHHhcCCCCceEEEEEecCCCHH----HHHHHHHHhhhcCCCcEEEEecCCcccCCccccccc
Confidence            554444333332221 25678999999998865    3333444444 47899999999999854 3334444

>PRK00784 cobyric acid synthase; Provisional

Probab=99.04  E-value=1.2e-08  Score=99.57  Aligned_cols=204  Identities=18%  Similarity=0.217  Sum_probs=107.9

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcC-CCccccceecccc
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNG-DCRLDQALVRDKR  127 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~  127 (340)
                      |++.|.|+|+..|+|||++++.|+..|+++|++|..+..  ........-+.+... ..-..++.. .......    ..
T Consensus         1 m~~~ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp--v~~~~~~~~~~dg~~-~~Da~~l~~~~~~~~~~----~~   73 (488)
T PRK00784          1 MAKALMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA--QNMSLNSAVTADGGE-IGRAQALQAEAAGVEPS----VD   73 (488)
T ss_pred             CCceEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc--hhccccceECCCCCe-eHHHHHHHHHhCCCCch----hc
Confidence            477899999999999999999999999999999987744  211111000000000 000011110 0000000    00


Q ss_pred             cCceeEeecCCCCC----------CCCC----CcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCC--------HHHHHH
Q 047623          128 WSNFELLCISKPRS----------KLPL----GFGGKALTWVVEALKSRQEGSPDFILIDCPAGID--------AGFITA  185 (340)
Q Consensus       128 ~~~l~~l~~~~~~~----------~~~~----~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~--------~~~~~~  185 (340)
                      .+...+-|..+...          ..+.    .-.......+.+.+.. +.++||++||+..+++.        .....+
T Consensus        74 i~P~~~~~~sp~~a~~~~~g~~~~~l~a~~~~~~~~~~~~~I~~~~~~-l~~~~D~vIVEGaGg~~~~~L~~~~~~~~dl  152 (488)
T PRK00784         74 MNPVLLKPQSDRGSQVIVQGKPVGNMDARDYHDYKPRLLEAVLESLDR-LAAEYDVVVVEGAGSPAEINLRDRDIANMGF  152 (488)
T ss_pred             cCCEEecCCCCCcceEEEcCccccccCHHHHhhcchhhHHHHHHHHHH-HHhcCCEEEEECCCCccccCcccCCchhHHH
Confidence            01111112111110          0000    0011223344444433 34479999999885432        112233


Q ss_pred             HhcCC-eEEEEeCCChh-hHHHHHHHHHHHHhc-CCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHH
Q 047623          186 ITPAN-EAVLVTTPDIT-SLRDADRVTGLLECD-GIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEV  262 (340)
Q Consensus       186 l~~ad-~viiv~~~~~~-s~~~~~~~~~~l~~~-~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~  262 (340)
                      +...+ -||+|+..+.. ++..+....+.+... +.+..++|+|++.++..  ......+.+.+..+.++++.||+++.+
T Consensus       153 ak~l~~PVILV~~~~~g~~~~~i~~~~~~l~~~~~~~i~GvI~N~v~~~~~--~~~~~~~~l~~~~gipvLG~iP~~~~L  230 (488)
T PRK00784        153 AEAADAPVILVADIDRGGVFASLVGTLALLPPEERARVKGFIINKFRGDIS--LLEPGLDWLEELTGVPVLGVLPYLDDL  230 (488)
T ss_pred             HHHcCCCEEEEEeCCcCcHHHHHHHHHHhcChhhCCcEEEEEEECCCCCHH--HHHHHHHHHHHhcCCCEEEEcCCCcCC
Confidence            33222 26666666544 466666555666533 45789999999987521  111234457777899999999998663

>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional

Probab=99.04  E-value=2e-09  Score=96.55  Aligned_cols=202  Identities=12%  Similarity=0.068  Sum_probs=113.5

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWS  129 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  129 (340)
                      |++|+|.|.| |+||||++.+|+..|+++| +|++|+.|+....     ..   ++.+-..........  .....   +
T Consensus         1 M~~i~i~G~~-gSGKTTLi~~Li~~L~~~G-~V~~IKhd~h~~~-----~~---~g~Ds~~~~~aGa~~--v~~~s---~   65 (274)
T PRK14493          1 MKVLSIVGYK-ATGKTTLVERLVDRLSGRG-RVGTVKHMDTERL-----NP---DGTDTGRHFDAGADV--VYGLT---D   65 (274)
T ss_pred             CcEEEEECCC-CCCHHHHHHHHHHHHHhCC-CEEEEEEcCCCcC-----CC---CCCCcHHHHHCCCcE--EEEec---C
Confidence            5799999886 9999999999999999999 8999999986211     10   111111111111110  00000   1


Q ss_pred             ceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCH--HHHHHHhcCC-eEEEEeCCChhhHHHH
Q 047623          130 NFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDA--GFITAITPAN-EAVLVTTPDITSLRDA  206 (340)
Q Consensus       130 ~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~--~~~~~l~~ad-~viiv~~~~~~s~~~~  206 (340)
                      +-.++-           .....+..+++.+.    .++|+||||+......  .....+..+| .+++|..|+..+   +
T Consensus        66 ~~~~~~-----------~~~~~l~~~l~~l~----~~~D~vlVEG~k~~~~pki~v~~~~~~~~~~l~p~~~s~~d---~  127 (274)
T PRK14493         66 GEWVAS-----------GRDRSLDDALDDLA----PGMDYAVVEGFKDSRLPKVVLGDMDADSDVVARAPTAADLD---T  127 (274)
T ss_pred             CeEEEE-----------ecCCCHHHHHHhhC----cCCCEEEEECCCCCCCCEEEEEecccCCcEEEecCCCCccC---H
Confidence            111110           01123444454443    2699999999997642  2233445677 899999988887   4


Q ss_pred             HHHHHHHHhcCC-CceEEEEecccCCcccccccccHHHHHHHhC--CceeEEecCChHHHHHHhcCCceEeeCCC-CHHH
Q 047623          207 DRVTGLLECDGI-RDIKMVVNRVRTDMIKGEDMMSVLDIQEMLG--LALLGVIPEDSEVIRSTNRGYPLVLNKPP-TLAG  282 (340)
Q Consensus       207 ~~~~~~l~~~~~-~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g--~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~-s~~~  282 (340)
                      ..+++.+++..- -.+..++|++........           .|  ..+.+.+-...   .....+....++... ..+.
T Consensus       128 ~~lve~~~~~~~~l~~~~li~~~~~~~~~~~-----------~GAi~~F~G~VR~r~---~~~g~~v~~L~ye~y~~~A~  193 (274)
T PRK14493        128 EDLVAALESQPPYVTLESLVAKVKRSPDADK-----------AGAIATFTGRVRAKE---DADDEPTEYLEFEKYDGVAD  193 (274)
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHhccCCCCC-----------CcEEEEEEeEEEccc---cCCCCcEEEEEEEeCCHHHH
Confidence            445555554322 134456666653210000           02  12335554211   122445556666443 3678


Q ss_pred             HHHHHHHHHHHhcccc
Q 047623          283 LAFEQAAWRLVEQDSM  298 (340)
Q Consensus       283 ~~~~~la~~i~~~~~~  298 (340)
                      +.+.+|++++..+.+.
T Consensus       194 ~~l~~I~~e~~~~~~~  209 (274)
T PRK14493        194 ERMAAIREELKQRDGV  209 (274)
T ss_pred             HHHHHHHHHHHHhCCC
Confidence            9999999998887643

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=98.99  E-value=9e-09  Score=91.05  Aligned_cols=153  Identities=17%  Similarity=0.184  Sum_probs=99.8

Q ss_pred             CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCch-hccCCcCCCcccHHHhhcCCCccccceecc
Q 047623           47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLD-LLLGLENRVNYTVVEVLNGDCRLDQALVRD  125 (340)
Q Consensus        47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  125 (340)
                      .++..+|+|+ +-+|+||||+.-.|...|.++|++|.++--||+++-.. .++|              +..++.+..   
T Consensus        48 tG~a~viGIT-G~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLG--------------DRiRM~~~~---  109 (323)
T COG1703          48 TGNAHVIGIT-GVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILG--------------DRIRMQRLA---  109 (323)
T ss_pred             CCCCcEEEec-CCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccc--------------cHhhHHhhc---
Confidence            4677899999 78899999999999999999999999999999854432 3333              222222221   


Q ss_pred             cccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhH-H
Q 047623          126 KRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSL-R  204 (340)
Q Consensus       126 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~-~  204 (340)
                       ..+++++-+.+........   +......+..+...   .||+|||.|-+- +.....+...+|.+++++.|+..+- .
T Consensus       110 -~~~~vFiRs~~srG~lGGl---S~at~~~i~~ldAa---G~DvIIVETVGv-GQsev~I~~~aDt~~~v~~pg~GD~~Q  181 (323)
T COG1703         110 -VDPGVFIRSSPSRGTLGGL---SRATREAIKLLDAA---GYDVIIVETVGV-GQSEVDIANMADTFLVVMIPGAGDDLQ  181 (323)
T ss_pred             -cCCCeEEeecCCCccchhh---hHHHHHHHHHHHhc---CCCEEEEEecCC-CcchhHHhhhcceEEEEecCCCCcHHH
Confidence             1277777665554332221   23344555555553   899999999772 2223555677999999999976543 2


Q ss_pred             HHHH-HHHHHHhcCCCceEEEEecccCCc
Q 047623          205 DADR-VTGLLECDGIRDIKMVVNRVRTDM  232 (340)
Q Consensus       205 ~~~~-~~~~l~~~~~~~~~vviN~~~~~~  232 (340)
                      ..+. +++.-       =.+|+|+.+...
T Consensus       182 ~iK~GimEia-------Di~vINKaD~~~  203 (323)
T COG1703         182 GIKAGIMEIA-------DIIVINKADRKG  203 (323)
T ss_pred             HHHhhhhhhh-------heeeEeccChhh
Confidence            2221 11111       138999998643

>PRK05632 phosphate acetyltransferase; Reviewed

Probab=98.99  E-value=3.1e-09  Score=107.55  Aligned_cols=172  Identities=17%  Similarity=0.200  Sum_probs=105.4

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccccc
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRW  128 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  128 (340)
                      |++.|.|+++..|+|||+++..|+.+|.++|.+|..+.-..+ +.            .+......       . ...   
T Consensus         1 m~k~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi~~-~p------------~~~~~~~~-------~-~~~---   56 (684)
T PRK05632          1 MSRSIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPIAQ-PP------------LTMSEVEA-------L-LAS---   56 (684)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCccc-CC------------CCHHHHHH-------H-Hhc---
Confidence            467899999999999999999999999999999999874443 10            01111100       0 000   


Q ss_pred             CceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHH------HHHHH-hcCCeEEEEeCCChh
Q 047623          129 SNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAG------FITAI-TPANEAVLVTTPDIT  201 (340)
Q Consensus       129 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~------~~~~l-~~ad~viiv~~~~~~  201 (340)
                      .                 -....+..+++.+.+ +..+||+||||++.+....      ..... ...+-+++|+.++..
T Consensus        57 ~-----------------~~~~~~~~I~~~~~~-l~~~~D~VLIEGa~~~~~~~~~~~~na~iA~~L~~pVILV~~~~~~  118 (684)
T PRK05632         57 G-----------------QLDELLEEIVARYHA-LAKDCDVVLVEGLDPTRKHPFEFSLNAEIAKNLGAEVVLVSSGGND  118 (684)
T ss_pred             c-----------------CChHHHHHHHHHHHH-hccCCCEEEEeCcCCCCcCcccCchHHHHHHHhCCCEEEEECCCCC
Confidence            0                 001233455555544 4458999999999754321      11122 224668888888877


Q ss_pred             hHHH----HHHHHHHHH-hcCCCceEEEEec--ccCCcccccccccH--------------HHHHHHhCCceeEEecCCh
Q 047623          202 SLRD----ADRVTGLLE-CDGIRDIKMVVNR--VRTDMIKGEDMMSV--------------LDIQEMLGLALLGVIPEDS  260 (340)
Q Consensus       202 s~~~----~~~~~~~l~-~~~~~~~~vviN~--~~~~~~~~~~~~~~--------------~~i~~~~g~~v~~~Ip~d~  260 (340)
                      ++..    +....+.+. ..+.+.+++|+|+  +++.. .......+              .......+++++++||+++
T Consensus       119 si~d~~~~i~~~~~~l~~~~~~~v~GVIvNr~~v~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~LG~IP~d~  197 (684)
T PRK05632        119 TPEELAERIELAASSFGGAKNANILGVIINKLNAPVDE-QGRTRPDLSEIFDDSSKANVDPSKLFASSPLPLLGVVPWSP  197 (684)
T ss_pred             ChHHHHHHHHHHHHHhccCCCCcEEEEEEECCCCCHHH-HHHHHHHHHhhhccccccchhcchhhhcCCCceEEEccCcc
Confidence            6543    344444444 4567899999999  55442 11100001              1122345788999999998


Q ss_pred             HHH
Q 047623          261 EVI  263 (340)
Q Consensus       261 ~~~  263 (340)
                      .+.
T Consensus       198 ~L~  200 (684)
T PRK05632        198 DLI  200 (684)
T ss_pred             ccC
Confidence            764

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=98.98  E-value=2.2e-08  Score=92.89  Aligned_cols=164  Identities=18%  Similarity=0.261  Sum_probs=100.0

Q ss_pred             CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccc
Q 047623           47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDK  126 (340)
Q Consensus        47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  126 (340)
                      .+.+.+|.+. +=.|+||||+|.-||.+|.++|++|+++-+|...+..-.-+..       +    ..            
T Consensus        97 ~~~P~vImmv-GLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~-------L----a~------------  152 (451)
T COG0541          97 KKPPTVILMV-GLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQ-------L----AE------------  152 (451)
T ss_pred             CCCCeEEEEE-eccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHH-------H----HH------------
Confidence            3445666666 5667899999999999999999999999999985553322110       0    00            


Q ss_pred             ccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCC--CHHHHH------HHhcCCeEEEEeCC
Q 047623          127 RWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGI--DAGFIT------AITPANEAVLVTTP  198 (340)
Q Consensus       127 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~--~~~~~~------~l~~ad~viiv~~~  198 (340)
                       .-++.+++.+..         ...+....+.+.......||+|||||++..  +.....      .....|.+++|++.
T Consensus       153 -q~~v~~f~~~~~---------~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDa  222 (451)
T COG0541         153 -QVGVPFFGSGTE---------KDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDA  222 (451)
T ss_pred             -HcCCceecCCCC---------CCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEec
Confidence             022333322111         112222333333333357999999999955  332222      22357889999887


Q ss_pred             C--hhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623          199 D--ITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL  253 (340)
Q Consensus       199 ~--~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~  253 (340)
                      .  ......+..+-+     .+...++|+++.+.+..+...    ..+...+|.|+-
T Consensus       223 m~GQdA~~~A~aF~e-----~l~itGvIlTKlDGdaRGGaA----LS~~~~tg~PIk  270 (451)
T COG0541         223 MIGQDAVNTAKAFNE-----ALGITGVILTKLDGDARGGAA----LSARAITGKPIK  270 (451)
T ss_pred             ccchHHHHHHHHHhh-----hcCCceEEEEcccCCCcchHH----HhhHHHHCCCeE
Confidence            3  334444444433     345688999999988744443    356677886644

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=98.97  E-value=4.2e-08  Score=90.20  Aligned_cols=152  Identities=18%  Similarity=0.181  Sum_probs=90.7

Q ss_pred             CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCch-hccCCcCCCcccHHHhhcCCCccccceecc
Q 047623           47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLD-LLLGLENRVNYTVVEVLNGDCRLDQALVRD  125 (340)
Q Consensus        47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  125 (340)
                      .+...+|.|+ +..|+||||++..|+..+.++|++|.++..|++++... ..+|              +..++.+    .
T Consensus        53 ~~~~~~igi~-G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallg--------------d~~r~~~----~  113 (332)
T PRK09435         53 TGNALRIGIT-GVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILG--------------DKTRMER----L  113 (332)
T ss_pred             CCCcEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhc--------------hHhHHHh----h
Confidence            3556789988 55899999999999999999999999999999843321 1121              1111110    0


Q ss_pred             cccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeC-CChhhHH
Q 047623          126 KRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTT-PDITSLR  204 (340)
Q Consensus       126 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~-~~~~s~~  204 (340)
                      ...++..+...+......   -........++.+..   ..||+|||||++..... ..+...||.+++|+. +...++.
T Consensus       114 ~~~~~~~~r~~~~~~~l~---~~a~~~~~~~~~~~~---~g~d~viieT~Gv~qs~-~~i~~~aD~vlvv~~p~~gd~iq  186 (332)
T PRK09435        114 SRHPNAFIRPSPSSGTLG---GVARKTRETMLLCEA---AGYDVILVETVGVGQSE-TAVAGMVDFFLLLQLPGAGDELQ  186 (332)
T ss_pred             cCCCCeEEEecCCccccc---chHHHHHHHHHHHhc---cCCCEEEEECCCCccch-hHHHHhCCEEEEEecCCchHHHH
Confidence            111333333222111000   011233344444433   47999999999955332 335678999999986 4555565


Q ss_pred             HHHH-HHHHHHhcCCCceEEEEecccCC
Q 047623          205 DADR-VTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       205 ~~~~-~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      .... .++..+       .+|+|+++..
T Consensus       187 ~~k~gi~E~aD-------IiVVNKaDl~  207 (332)
T PRK09435        187 GIKKGIMELAD-------LIVINKADGD  207 (332)
T ss_pred             HHHhhhhhhhh-------eEEeehhccc
Confidence            5443 222221       5999999854

>TIGR00379 cobB cobyrinic acid a,c-diamide synthase

Probab=98.95  E-value=2.5e-08  Score=96.16  Aligned_cols=169  Identities=20%  Similarity=0.252  Sum_probs=98.1

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCcee
Q 047623           53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNFE  132 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~  132 (340)
                      |.|+++.+|+|||++++.|+.+|+++|++|..+...+...        +    ..+.....+...           .+++
T Consensus         2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~g~d~~--------D----~~~~~~~~g~~~-----------~~ld   58 (449)
T TIGR00379         2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKVGPDYI--------D----PMFHTQATGRPS-----------RNLD   58 (449)
T ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEccCCCCC--------C----HHHHHHHhCCch-----------hhCC
Confidence            7899999999999999999999999999999997643210        0    011111111000           1111


Q ss_pred             EeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCC---------HHHHHHHhcCC-eEEEEeCCChhh
Q 047623          133 LLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGID---------AGFITAITPAN-EAVLVTTPDITS  202 (340)
Q Consensus       133 ~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~---------~~~~~~l~~ad-~viiv~~~~~~s  202 (340)
                      .           ...+   ...+.+.+.+ +..++|++||....++-         ..........+ -||+|+..... 
T Consensus        59 ~-----------~~~~---~~~i~~~~~~-~~~~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~~~-  122 (449)
T TIGR00379        59 S-----------FFMS---EAQIQECFHR-HSKGTDYSIIEGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQRL-  122 (449)
T ss_pred             c-----------ccCC---HHHHHHHHHH-hcccCCEEEEecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCchH-
Confidence            0           0012   2334444433 23479999999986542         12333333322 36666665421 


Q ss_pred             HHHHHHHHHHH--HhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHH
Q 047623          203 LRDADRVTGLL--ECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVI  263 (340)
Q Consensus       203 ~~~~~~~~~~l--~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~  263 (340)
                      ...+..+...+  ...+.+..++|+|++.+...   .......+++..+.+++++||+++.+.
T Consensus       123 ~~t~~al~~~~~~~~~~i~i~GvIlN~v~~~~~---~~~~~~~i~~~~gipvLG~IP~~~~l~  182 (449)
T TIGR00379       123 SRSAAAIVLGYRSFDPGVKLKGVILNRVGSERH---LEKLKIAVEPLRGIPILGVIPRQQDLK  182 (449)
T ss_pred             HHHHHHHHHHHHhhCCCCCEEEEEEECCCCHHH---HHHHHHHHHHhCCCCEEEEecCccccC
Confidence            12222222112  12367789999999986431   112345666778999999999998763

This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.

>PRK14974 cell division protein FtsY; Provisional

Probab=98.95  E-value=2.9e-08  Score=91.49  Aligned_cols=164  Identities=22%  Similarity=0.283  Sum_probs=92.5

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccccc
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRW  128 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  128 (340)
                      .+.+|.|+ +..|+||||++++||.++.+.|++|+++++|.........+.       ...+.                 
T Consensus       139 ~~~vi~~~-G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~-------~~a~~-----------------  193 (336)
T PRK14974        139 KPVVIVFV-GVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLE-------EHAER-----------------  193 (336)
T ss_pred             CCeEEEEE-cCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHH-------HHHHH-----------------
Confidence            45677777 599999999999999999999999999999975332211110       00000                 


Q ss_pred             CceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCC--CHHHHHHH------hcCCeEEEEeCCCh
Q 047623          129 SNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGI--DAGFITAI------TPANEAVLVTTPDI  200 (340)
Q Consensus       129 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~--~~~~~~~l------~~ad~viiv~~~~~  200 (340)
                      -++.++.....         ......+.+.+......+||+|||||++..  +.....-|      ...|.+++|+....
T Consensus       194 lgv~v~~~~~g---------~dp~~v~~~ai~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~  264 (336)
T PRK14974        194 LGVKVIKHKYG---------ADPAAVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALA  264 (336)
T ss_pred             cCCceecccCC---------CCHHHHHHHHHHHHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeecccc
Confidence            11111111100         011111222222222247999999999966  23222222      24788888887743


Q ss_pred             hhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623          201 TSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL  253 (340)
Q Consensus       201 ~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~  253 (340)
                      . -+..... +.+.. ....-++|+|+++......    .+..+....+.|+.
T Consensus       265 g-~d~~~~a-~~f~~-~~~~~giIlTKlD~~~~~G----~~ls~~~~~~~Pi~  310 (336)
T PRK14974        265 G-NDAVEQA-REFNE-AVGIDGVILTKVDADAKGG----AALSIAYVIGKPIL  310 (336)
T ss_pred             c-hhHHHHH-HHHHh-cCCCCEEEEeeecCCCCcc----HHHHHHHHHCcCEE
Confidence            2 2222222 22221 2345789999999875322    34455566777766

>PRK13505 formate--tetrahydrofolate ligase; Provisional

Probab=98.91  E-value=6.7e-08  Score=92.63  Aligned_cols=94  Identities=15%  Similarity=0.214  Sum_probs=72.5

Q ss_pred             hHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee----------EEecCChHHHHHHhcCCc
Q 047623          202 SLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL----------GVIPEDSEVIRSTNRGYP  271 (340)
Q Consensus       202 s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~----------~~Ip~d~~~~~a~~~g~~  271 (340)
                      .+.++.+.++.++..+++ +.|.+|+++.+..  +....+++.++..|.++.          +.+|.++.+.++..++.+
T Consensus       357 Gl~NL~RHIenvr~FGvP-vVVAINKFd~DTe--~Ei~~I~~~c~e~Gv~va~~~~~~~Gg~Gai~LA~aVveA~~~~~s  433 (557)
T PRK13505        357 GFANLERHIENIRKFGVP-VVVAINKFVTDTD--AEIAALKELCEELGVEVALSEVWAKGGEGGVELAEKVVELIEEGES  433 (557)
T ss_pred             HHHHHHHHHHHHHHcCCC-EEEEEeCCCCCCH--HHHHHHHHHHHHcCCCEEEecccccCCcchHHHHHHHHHHHhcCCC
Confidence            456777888888877664 5699999998763  133347788888999999          999999999988886554


Q ss_pred             --eEeeCCCCHHHHHHHHHHHHHHhcccc
Q 047623          272 --LVLNKPPTLAGLAFEQAAWRLVEQDSM  298 (340)
Q Consensus       272 --v~~~~~~s~~~~~~~~la~~i~~~~~~  298 (340)
                        -..|..+.+....++.++++|.+..+-
T Consensus       434 ~f~~lY~~d~sl~eKIe~IAkkIYGA~~V  462 (557)
T PRK13505        434 NFKPLYDDEDSLEEKIEKIATKIYGAKGV  462 (557)
T ss_pred             CCceecCCCCcHHHHHHHHHHHccCCCCe
Confidence              123455678999999999999987654

>TIGR00345 arsA arsenite-activated ATPase (arsA)

Probab=98.88  E-value=1.2e-08  Score=92.69  Aligned_cols=42  Identities=31%  Similarity=0.396  Sum_probs=38.7

Q ss_pred             CeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          190 NEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       190 d~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      ..+++|+.|+..++..+.++++.++..+....++|+|++.+.
T Consensus       190 t~~vlV~~pe~~si~e~~rl~~~L~~~g~~~~~lvvN~v~~~  231 (284)
T TIGR00345       190 TSFVLVVIPEKMSLYESERAHKELAKYGIKVDAVIVNQVLPE  231 (284)
T ss_pred             eEEEEEECCCCCcHHHHHHHHHHHHhCCCCCCEEEEeCCcCC
Confidence            448999999999999999999999999988999999998875

The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.86  E-value=1.4e-07  Score=80.67  Aligned_cols=163  Identities=23%  Similarity=0.285  Sum_probs=91.7

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWS  129 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  129 (340)
                      +++|++. +-.||||||+++-||+++..+|++|++|-+|.........+       ..+.+.                 -
T Consensus         1 p~vi~lv-GptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL-------~~~a~~-----------------l   55 (196)
T PF00448_consen    1 PKVIALV-GPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQL-------KTYAEI-----------------L   55 (196)
T ss_dssp             SEEEEEE-ESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHH-------HHHHHH-----------------H
T ss_pred             CEEEEEE-CCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHH-------HHHHHH-----------------h
Confidence            3678888 45689999999999999998899999999997632221111       011111                 1


Q ss_pred             ceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCC-H-HH----HHHH--hcCCeEEEEeCCChh
Q 047623          130 NFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGID-A-GF----ITAI--TPANEAVLVTTPDIT  201 (340)
Q Consensus       130 ~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~-~-~~----~~~l--~~ad~viiv~~~~~~  201 (340)
                      ++.+......         .+....+.+.+.+.-.++||+|+|||++... . ..    ...+  ...+.+++|......
T Consensus        56 ~vp~~~~~~~---------~~~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~  126 (196)
T PF00448_consen   56 GVPFYVARTE---------SDPAEIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMG  126 (196)
T ss_dssp             TEEEEESSTT---------SCHHHHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGG
T ss_pred             ccccchhhcc---------hhhHHHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccC
Confidence            2222211100         0111112223332223479999999998442 1 11    1122  246778888877554


Q ss_pred             hHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623          202 SLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL  253 (340)
Q Consensus       202 s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~  253 (340)
                      . +.+..+.+..+..+.  -++|+++.+...    ..-....+....+.|+.
T Consensus       127 ~-~~~~~~~~~~~~~~~--~~lIlTKlDet~----~~G~~l~~~~~~~~Pi~  171 (196)
T PF00448_consen  127 Q-EDLEQALAFYEAFGI--DGLILTKLDETA----RLGALLSLAYESGLPIS  171 (196)
T ss_dssp             G-HHHHHHHHHHHHSST--CEEEEESTTSSS----TTHHHHHHHHHHTSEEE
T ss_pred             h-HHHHHHHHHhhcccC--ceEEEEeecCCC----CcccceeHHHHhCCCeE
Confidence            3 344444444444333  589999999865    33345566777787766

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.81  E-value=1.8e-07  Score=87.96  Aligned_cols=165  Identities=18%  Similarity=0.159  Sum_probs=95.1

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHH-HHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccccc
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSL-ARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRW  128 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~l-a~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  128 (340)
                      .++++|+ +.+|+||||++++||..+ ...|++|+++|+|.+.......+..          ..              ..
T Consensus       223 ~~vi~lv-GptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~----------yA--------------e~  277 (432)
T PRK12724        223 RKVVFFV-GPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKR----------YA--------------DT  277 (432)
T ss_pred             CeEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHH----------HH--------------Hh
Confidence            3556665 899999999999999876 5679999999999973322211100          00              00


Q ss_pred             CceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCC--CHHHHHH----Hhc-----CCeEEEEeC
Q 047623          129 SNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGI--DAGFITA----ITP-----ANEAVLVTT  197 (340)
Q Consensus       129 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~--~~~~~~~----l~~-----ad~viiv~~  197 (340)
                      .++.+..             ......+.+.+.+   .+||+|||||++..  +......    +..     ...+++|+.
T Consensus       278 lgvp~~~-------------~~~~~~l~~~l~~---~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLs  341 (432)
T PRK12724        278 MGMPFYP-------------VKDIKKFKETLAR---DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLS  341 (432)
T ss_pred             cCCCeee-------------hHHHHHHHHHHHh---CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEe
Confidence            1111110             0112334444432   47999999998753  2222222    221     235666666


Q ss_pred             CChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeE-----EecCChHH
Q 047623          198 PDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLG-----VIPEDSEV  262 (340)
Q Consensus       198 ~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~-----~Ip~d~~~  262 (340)
                      +.... ..+..+.+..+.  ...-++|+++.+....    .-.+..+...++.|+..     .||+|-..
T Consensus       342 At~~~-~~~~~~~~~f~~--~~~~glIlTKLDEt~~----~G~il~i~~~~~lPI~ylt~GQ~VPeDi~~  404 (432)
T PRK12724        342 STSSY-HHTLTVLKAYES--LNYRRILLTKLDEADF----LGSFLELADTYSKSFTYLSVGQEVPFDILN  404 (432)
T ss_pred             CCCCH-HHHHHHHHHhcC--CCCCEEEEEcccCCCC----ccHHHHHHHHHCCCEEEEecCCCCCCCHHH
Confidence            54332 333444444433  3457899999998752    23355677778888652     36666554

>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional

Probab=98.76  E-value=8e-08  Score=91.42  Aligned_cols=176  Identities=16%  Similarity=0.133  Sum_probs=103.4

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWS  129 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  129 (340)
                      |+.|.|+++..|+||||++..|+.+|.++|.+|..+...++..+...+            ....+...           .
T Consensus         1 m~~~~i~~~~s~~GKT~vt~gl~~~l~~~g~~v~~~K~Gpd~iD~~~~------------~~~~g~~~-----------~   57 (433)
T PRK13896          1 MKGFVLGGTSSGVGKTVATLATIRALEDAGYAVQPAKAGPDFIDPSHH------------EAVAGRPS-----------R   57 (433)
T ss_pred             CceEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEEeeCCCCCCHHHH------------HHHhCCCc-----------c
Confidence            346899999999999999999999999999999988876652221111            11111100           1


Q ss_pred             ceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCH----HHHHHHhcC-CeEEEEeCCChhhHH
Q 047623          130 NFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDA----GFITAITPA-NEAVLVTTPDITSLR  204 (340)
Q Consensus       130 ~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~----~~~~~l~~a-d~viiv~~~~~~s~~  204 (340)
                      +++..           ....+   .+.+.+..   ..+|++||....++-+    .+......- -=||+|+.....+..
T Consensus        58 nld~~-----------~~~~~---~i~~~~~~---~~~d~~vIEG~gGl~dg~~~s~adla~~l~~PviLVv~~~~g~~s  120 (433)
T PRK13896         58 TLDPW-----------LSGED---GMRRNYYR---GEGDICVVEGVMGLYDGDVSSTAMVAEALDLPVVLVVDAKAGMES  120 (433)
T ss_pred             cCChh-----------hCCHH---HHHHHHHh---hcCCEEEEECCCccccCCCCCHHHHHHHHCCCEEEEEcCcccHHH
Confidence            11100           01112   22222222   2499999999886621    122222221 138888888777544


Q ss_pred             HHH--HHHHHHHh---cCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHH-HHHhcCC
Q 047623          205 DAD--RVTGLLEC---DGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVI-RSTNRGY  270 (340)
Q Consensus       205 ~~~--~~~~~l~~---~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~-~a~~~g~  270 (340)
                      .+.  .-+..+..   .+++..++|+|++.+...    ...+++..+. ++++++.||.++.+. .....|.
T Consensus       121 ~aa~l~g~~~~~~~~~~~~~i~GvIlN~~~~~~h----~~~l~~~~~~-~i~vlG~lP~~~~~~~~~RHLGL  187 (433)
T PRK13896        121 VAATALGFRAYADRIGRDIDVAGVIAQRAHGGRH----ADGIRDALPD-ELTYFGRIPPRDDLEIPDRHLGL  187 (433)
T ss_pred             HHHHHHHHHHHHHhccCCCcEEEEEEECCCcHHH----HHHHHHhhhh-cCceeEecccCCCCCCCCCCcCC
Confidence            443  33322332   367889999999987431    1112222233 789999999988853 4445555

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.75  E-value=6.4e-07  Score=84.20  Aligned_cols=158  Identities=14%  Similarity=0.118  Sum_probs=91.2

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHH----CCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceec
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLAR----LGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVR  124 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~----~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  124 (340)
                      .+++|++. +..|+||||+++.||..+..    .|++|+++++|.........+..       +.+.             
T Consensus       173 ~~~vi~lv-GptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~-------~a~~-------------  231 (388)
T PRK12723        173 KKRVFILV-GPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQT-------YGDI-------------  231 (388)
T ss_pred             CCeEEEEE-CCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHH-------Hhhc-------------
Confidence            45677776 56699999999999999874    48999999999863332222110       0000             


Q ss_pred             ccccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCC--HHH----HHHHhcC--C-eEEEE
Q 047623          125 DKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGID--AGF----ITAITPA--N-EAVLV  195 (340)
Q Consensus       125 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~--~~~----~~~l~~a--d-~viiv  195 (340)
                          -++.+...          .....+...++.+     .+||+||||+++...  ...    ...+..+  + .+++|
T Consensus       232 ----lgvpv~~~----------~~~~~l~~~L~~~-----~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LV  292 (388)
T PRK12723        232 ----MGIPVKAI----------ESFKDLKEEITQS-----KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLA  292 (388)
T ss_pred             ----CCcceEee----------CcHHHHHHHHHHh-----CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEE
Confidence                01101000          0112233333333     369999999999542  211    2233322  3 57777


Q ss_pred             eCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623          196 TTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL  253 (340)
Q Consensus       196 ~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~  253 (340)
                      +.+... -..+.++.+...  ....-++|+++.+....    .-.+..+...++.|+.
T Consensus       293 lsat~~-~~~~~~~~~~~~--~~~~~~~I~TKlDet~~----~G~~l~~~~~~~~Pi~  343 (388)
T PRK12723        293 VSSTTK-TSDVKEIFHQFS--PFSYKTVIFTKLDETTC----VGNLISLIYEMRKEVS  343 (388)
T ss_pred             EcCCCC-HHHHHHHHHHhc--CCCCCEEEEEeccCCCc----chHHHHHHHHHCCCEE
Confidence            777554 333334444433  23457899999998763    3335567777787765

>PRK06278 cobyrinic acid a,c-diamide synthase; Validated

Probab=98.71  E-value=5.4e-07  Score=86.75  Aligned_cols=166  Identities=19%  Similarity=0.165  Sum_probs=98.6

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccc
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKR  127 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  127 (340)
                      .+++.|.|+++..|+||||+++.|+.+|.++   |..+...+..-+                 +......+..       
T Consensus       236 ~~~~~i~Iagt~Tg~GKT~vt~~L~~al~~~---v~~fK~GpD~id-----------------~~p~~~~~~~-------  288 (476)
T PRK06278        236 NKPKGIILLATGSESGKTFLTTSIAGKLRGK---VFVAKIGPDVRD-----------------IVPSLYLLRE-------  288 (476)
T ss_pred             cCCCeEEEEeCCCCCCHHHHHHHHHHHHHhC---eEEEcCCCChhh-----------------cCCcceeccc-------
Confidence            4467899999999999999999999999986   776665432111                 0000000000       


Q ss_pred             cCceeEeecCCCCC-C--CCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHH---------HHHHHhcC-CeEEE
Q 047623          128 WSNFELLCISKPRS-K--LPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAG---------FITAITPA-NEAVL  194 (340)
Q Consensus       128 ~~~l~~l~~~~~~~-~--~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~---------~~~~l~~a-d~vii  194 (340)
                             +..+... +  .+..+..   ...++.++.   .++|++||+...++...         ........ --||+
T Consensus       289 -------~~sp~~a~n~~~d~~~~~---~~~~~~~~~---~~~DivIIEGagGL~dg~~~~~~~~S~adlAk~l~~PVIL  355 (476)
T PRK06278        289 -------KMTKYNSIKIGDRGWSDV---EEFLEFVKN---SDYDYYIIEGVMGAFTGALNKKNPYSGAEIAKALGFPVYI  355 (476)
T ss_pred             -------ccCChHHHhhcCCcccCH---HHHHHHHHh---cCCCEEEEECCCCcccccCCCCccccHHHHHHHhCCCEEE
Confidence                   0000000 0  0111111   223333332   25899999998765332         11222221 23888


Q ss_pred             EeCCChhhHHHHHH----HHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecC
Q 047623          195 VTTPDITSLRDADR----VTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPE  258 (340)
Q Consensus       195 v~~~~~~s~~~~~~----~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~  258 (340)
                      |+..+..++..+..    +.+.++..+.+..++|+|++.+..    +......+.+..|++++++ |.
T Consensus       356 V~~~~~g~i~~~~~~i~G~~~~l~~~~i~i~GVIlN~v~~~~----~~~~~~~~le~~gvpVLG~-~~  418 (476)
T PRK06278        356 VSSCSKSGIEGAFVESMAYYSLLKKMGVKVEGIILNKVYNME----IFEKVKKIAENSNINLIGV-GK  418 (476)
T ss_pred             EEcCCCChHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCcHH----HHHHHHHHHHhcCCCEEEe-cc
Confidence            88888877555543    445666667788999999998644    3333566777799999999 54

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=98.69  E-value=8.5e-08  Score=86.92  Aligned_cols=43  Identities=33%  Similarity=0.343  Sum_probs=37.3

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC-C-CcEEEEecCCCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARL-G-FSVVAIDADVGL   91 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~-g-~~VlliD~D~~~   91 (340)
                      ..+++|+|+|+ +|+||||+++.||.+++.+ | ++|++|++|++.
T Consensus       192 ~~~~vi~~vGp-tGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r  236 (282)
T TIGR03499       192 EQGGVIALVGP-TGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR  236 (282)
T ss_pred             CCCeEEEEECC-CCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence            35678999855 8999999999999999976 5 999999999873

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=98.66  E-value=5.6e-08  Score=84.95  Aligned_cols=151  Identities=21%  Similarity=0.205  Sum_probs=84.9

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCch-hccCCcCCCcccHHHhhcCCCccccceeccc
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLD-LLLGLENRVNYTVVEVLNGDCRLDQALVRDK  126 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  126 (340)
                      +...+|+|+ +.+|+||||+.-.|+..+.++|++|.++-.||.++-.. .++|-              ..++.+.    .
T Consensus        27 g~a~~iGiT-G~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGD--------------RiRM~~~----~   87 (266)
T PF03308_consen   27 GRAHVIGIT-GPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGD--------------RIRMQEL----S   87 (266)
T ss_dssp             T-SEEEEEE-E-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS----------------GGGCHHH----H
T ss_pred             CCceEEEee-CCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCccccc--------------HHHhcCc----C
Confidence            457899998 67899999999999999999999999999999844332 33332              1122211    1


Q ss_pred             ccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhh-HHH
Q 047623          127 RWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITS-LRD  205 (340)
Q Consensus       127 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s-~~~  205 (340)
                      ..+++++-+.........   -+......+..+..   ..||+|||.|-+- +.....+...+|.+++++.|+..+ +..
T Consensus        88 ~d~~vfIRS~atRG~lGG---ls~~t~~~v~ll~a---aG~D~IiiETVGv-GQsE~~I~~~aD~~v~v~~Pg~GD~iQ~  160 (266)
T PF03308_consen   88 RDPGVFIRSMATRGSLGG---LSRATRDAVRLLDA---AGFDVIIIETVGV-GQSEVDIADMADTVVLVLVPGLGDEIQA  160 (266)
T ss_dssp             TSTTEEEEEE---SSHHH---HHHHHHHHHHHHHH---TT-SEEEEEEESS-STHHHHHHTTSSEEEEEEESSTCCCCCT
T ss_pred             CCCCEEEeecCcCCCCCC---ccHhHHHHHHHHHH---cCCCEEEEeCCCC-CccHHHHHHhcCeEEEEecCCCccHHHH
Confidence            226666654443321111   11233444555544   3799999999772 333456678899999999996554 211


Q ss_pred             HHH-HHHHHHhcCCCceEEEEecccCC
Q 047623          206 ADR-VTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       206 ~~~-~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      .+. ++|.       -=.+|+|+.+..
T Consensus       161 ~KaGimEi-------aDi~vVNKaD~~  180 (266)
T PF03308_consen  161 IKAGIMEI-------ADIFVVNKADRP  180 (266)
T ss_dssp             B-TTHHHH--------SEEEEE--SHH
T ss_pred             Hhhhhhhh-------ccEEEEeCCChH
Confidence            111 1111       113899999843

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.63  E-value=1.9e-06  Score=86.73  Aligned_cols=160  Identities=18%  Similarity=0.134  Sum_probs=93.9

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHH-HCC-CcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccc
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLA-RLG-FSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDK  126 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la-~~g-~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  126 (340)
                      .+++|+++ +-.|+||||++..||..+. +.| ++|.++++|.+.......+.       ...+.               
T Consensus       184 ~g~Vi~lV-GpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~-------~~a~~---------------  240 (767)
T PRK14723        184 QGGVLALV-GPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLR-------IYGRI---------------  240 (767)
T ss_pred             CCeEEEEE-CCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHH-------HHHHh---------------
Confidence            35788888 5678899999999999885 556 69999999976322211110       00000               


Q ss_pred             ccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCC--CHHHHHH---H---hcCCeEEEEeCC
Q 047623          127 RWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGI--DAGFITA---I---TPANEAVLVTTP  198 (340)
Q Consensus       127 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~--~~~~~~~---l---~~ad~viiv~~~  198 (340)
                        .++.+..          ..+...+...++.+.     +||+|||||++..  +......   +   ...+.+++|+..
T Consensus       241 --~gvpv~~----------~~~~~~l~~al~~~~-----~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsA  303 (767)
T PRK14723        241 --LGVPVHA----------VKDAADLRFALAALG-----DKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNA  303 (767)
T ss_pred             --CCCCccc----------cCCHHHHHHHHHHhc-----CCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECC
Confidence              1111100          012333444444443     5899999999933  2222221   1   124568888776


Q ss_pred             ChhhHHHHHHHHHHHHhc-CCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623          199 DITSLRDADRVTGLLECD-GIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL  253 (340)
Q Consensus       199 ~~~s~~~~~~~~~~l~~~-~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~  253 (340)
                      .. ..+.+.++.+.++.. +.+.-++|+++.+....    .-.+..+...+++|+.
T Consensus       304 t~-~~~~l~~i~~~f~~~~~~~i~glIlTKLDEt~~----~G~iL~i~~~~~lPI~  354 (767)
T PRK14723        304 AS-HGDTLNEVVHAYRHGAGEDVDGCIITKLDEATH----LGPALDTVIRHRLPVH  354 (767)
T ss_pred             CC-cHHHHHHHHHHHhhcccCCCCEEEEeccCCCCC----ccHHHHHHHHHCCCeE
Confidence            53 334445555555543 23567899999998763    3335567777787765

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.61  E-value=4.4e-06  Score=74.84  Aligned_cols=169  Identities=18%  Similarity=0.208  Sum_probs=99.3

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccccc
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRW  128 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  128 (340)
                      .+..+++. ++.|+||||+...+|..+..+|.+|.++++|.+.......+          .....              .
T Consensus        74 ~~~~i~~~-G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql----------~~~~~--------------~  128 (270)
T PRK06731         74 EVQTIALI-GPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQL----------QDYVK--------------T  128 (270)
T ss_pred             CCCEEEEE-CCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHH----------HHHhh--------------h
Confidence            44678887 55999999999999999998899999999997731111100          00000              0


Q ss_pred             CceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCC--CHHHHH----HH--hcCCeEEEEeCCCh
Q 047623          129 SNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGI--DAGFIT----AI--TPANEAVLVTTPDI  200 (340)
Q Consensus       129 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~--~~~~~~----~l--~~ad~viiv~~~~~  200 (340)
                      -++.+...          .+...+...++.+.+  ..+||+||||+++..  +.....    .+  ...|.+++|+.+..
T Consensus       129 ~~~~~~~~----------~~~~~l~~~l~~l~~--~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~  196 (270)
T PRK06731        129 IGFEVIAV----------RDEAAMTRALTYFKE--EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASM  196 (270)
T ss_pred             cCceEEec----------CCHHHHHHHHHHHHh--cCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCcc
Confidence            11111110          122344444555543  136999999999965  232222    22  23566787776543


Q ss_pred             hhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeE-----EecCChH
Q 047623          201 TSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLG-----VIPEDSE  261 (340)
Q Consensus       201 ~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~-----~Ip~d~~  261 (340)
                      .. ..+...++.+..  ...-++|+++.+....    .-.+..+....+.|+..     .||+|-.
T Consensus       197 ~~-~d~~~~~~~f~~--~~~~~~I~TKlDet~~----~G~~l~~~~~~~~Pi~~it~Gq~vp~di~  255 (270)
T PRK06731        197 KS-KDMIEIITNFKD--IHIDGIVFTKFDETAS----SGELLKIPAVSSAPIVLMTDGQDVKKNIH  255 (270)
T ss_pred             CH-HHHHHHHHHhCC--CCCCEEEEEeecCCCC----ccHHHHHHHHHCcCEEEEeCCCCCCcchh
Confidence            22 223334444443  4567899999998762    23355667778887662     3665544

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.51  E-value=1.5e-06  Score=79.44  Aligned_cols=153  Identities=15%  Similarity=0.168  Sum_probs=92.4

Q ss_pred             CCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecc
Q 047623           46 AGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRD  125 (340)
Q Consensus        46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  125 (340)
                      ....+.+|.|.| -.|+||||++..||+++.++|++|+||-+|-......--+.             .+...        
T Consensus        97 ~K~kpsVimfVG-LqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLk-------------qnA~k--------  154 (483)
T KOG0780|consen   97 KKGKPSVIMFVG-LQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLK-------------QNATK--------  154 (483)
T ss_pred             ccCCCcEEEEEe-ccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHH-------------HHhHh--------
Confidence            445566777774 55679999999999999999999999999976333221111             11101        


Q ss_pred             cccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCC--C-HHHHHHH-----hcCCeEEEEeC
Q 047623          126 KRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGI--D-AGFITAI-----TPANEAVLVTT  197 (340)
Q Consensus       126 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~--~-~~~~~~l-----~~ad~viiv~~  197 (340)
                         .++-++.         .+...+......+.+.+.-+++||+||+||++..  + .++.+..     ...|.||+|.+
T Consensus       155 ---~~iP~yg---------syte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmD  222 (483)
T KOG0780|consen  155 ---ARVPFYG---------SYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMD  222 (483)
T ss_pred             ---hCCeeEe---------cccccchHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEe
Confidence               1111111         1122233444555555555679999999999954  2 2222222     23688999998


Q ss_pred             CChhh--HHHHHHHHHHHHhcCCCceEEEEecccCCcccccc
Q 047623          198 PDITS--LRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGED  237 (340)
Q Consensus       198 ~~~~s--~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~  237 (340)
                      .+...  ...++.+-+     .+...++|+++.+....+...
T Consensus       223 asiGQaae~Qa~aFk~-----~vdvg~vIlTKlDGhakGGgA  259 (483)
T KOG0780|consen  223 ASIGQAAEAQARAFKE-----TVDVGAVILTKLDGHAKGGGA  259 (483)
T ss_pred             ccccHhHHHHHHHHHH-----hhccceEEEEecccCCCCCce
Confidence            86443  233333322     345577999998877654444

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.45  E-value=9.5e-06  Score=75.81  Aligned_cols=161  Identities=19%  Similarity=0.186  Sum_probs=88.9

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHH-CC-CcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecc
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLAR-LG-FSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRD  125 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~-~g-~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  125 (340)
                      ..+.+++++ +..|+||||+++.||..+.. .| .+|.+|.+|....+....+       ..+.+.              
T Consensus       135 ~~g~ii~lv-GptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL-------~~~a~~--------------  192 (374)
T PRK14722        135 ERGGVFALM-GPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQL-------RIFGKI--------------  192 (374)
T ss_pred             cCCcEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHH-------HHHHHH--------------
Confidence            445677777 77899999999999998774 46 6999999998633221111       000011              


Q ss_pred             cccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCC--CHHH---HHHHhc---CCeEEEEeC
Q 047623          126 KRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGI--DAGF---ITAITP---ANEAVLVTT  197 (340)
Q Consensus       126 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~--~~~~---~~~l~~---ad~viiv~~  197 (340)
                         -++.+...          .....+...+..+.     ++|+|+||+++..  +...   ...+..   .+.+++|+.
T Consensus       193 ---~gv~~~~~----------~~~~~l~~~l~~l~-----~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLs  254 (374)
T PRK14722        193 ---LGVPVHAV----------KDGGDLQLALAELR-----NKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLN  254 (374)
T ss_pred             ---cCCceEec----------CCcccHHHHHHHhc-----CCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEec
Confidence               01111000          11122333344443     5899999999844  2322   223322   344566666


Q ss_pred             CChhhHHHHHHHHHHHHhcC-------CCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623          198 PDITSLRDADRVTGLLECDG-------IRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL  253 (340)
Q Consensus       198 ~~~~s~~~~~~~~~~l~~~~-------~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~  253 (340)
                      +.. ....+.+.++.+....       ...-++|+++.+...    ..-.+..+....++|+.
T Consensus       255 Ats-~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~----~~G~~l~~~~~~~lPi~  312 (374)
T PRK14722        255 ATS-HGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS----NLGGVLDTVIRYKLPVH  312 (374)
T ss_pred             Ccc-ChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC----CccHHHHHHHHHCcCeE
Confidence            533 2233333333333221       135689999999876    23334566677777766

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=98.43  E-value=9.8e-06  Score=73.31  Aligned_cols=163  Identities=20%  Similarity=0.224  Sum_probs=99.1

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccc
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKR  127 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  127 (340)
                      +.+.+|.|+ +--|+||||+..-||++|.+.|++|++.=+|-.....-.-+...             .           .
T Consensus       137 ~~p~Vil~v-GVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w-------------~-----------e  191 (340)
T COG0552         137 KKPFVILFV-GVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVW-------------G-----------E  191 (340)
T ss_pred             CCcEEEEEE-ecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHH-------------H-----------H
Confidence            447788888 55689999999999999999999999998886422211111100             0           0


Q ss_pred             cCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCC---HHHHH------HHh-----cCCeEE
Q 047623          128 WSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGID---AGFIT------AIT-----PANEAV  193 (340)
Q Consensus       128 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~---~~~~~------~l~-----~ad~vi  193 (340)
                      .-++.++.....       -++.  .-..+.+.....++||+|||||++.+.   .++.+      ++.     +.+.++
T Consensus       192 r~gv~vI~~~~G-------~DpA--aVafDAi~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~l  262 (340)
T COG0552         192 RLGVPVISGKEG-------ADPA--AVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEIL  262 (340)
T ss_pred             HhCCeEEccCCC-------CCcH--HHHHHHHHHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEE
Confidence            033444432111       1111  123333333334589999999999662   22211      121     224477


Q ss_pred             EEeCC--ChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623          194 LVTTP--DITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL  253 (340)
Q Consensus       194 iv~~~--~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~  253 (340)
                      ++.+.  +..++.+++.+-+.+.     .-|+|+++.+....+..    +..+...++.|+.
T Consensus       263 lvlDAttGqnal~QAk~F~eav~-----l~GiIlTKlDgtAKGG~----il~I~~~l~~PI~  315 (340)
T COG0552         263 LVLDATTGQNALSQAKIFNEAVG-----LDGIILTKLDGTAKGGI----ILSIAYELGIPIK  315 (340)
T ss_pred             EEEEcccChhHHHHHHHHHHhcC-----CceEEEEecccCCCcce----eeeHHHHhCCCEE
Confidence            77554  5667777777666543     56899999997654333    3367788888876

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.42  E-value=1e-05  Score=78.04  Aligned_cols=158  Identities=19%  Similarity=0.145  Sum_probs=85.8

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHH-HCC-CcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccc
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLA-RLG-FSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDK  126 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la-~~g-~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  126 (340)
                      .+++|+++ +-.|+||||++..||..+. ++| ++|.+|++|.+..+....+       ..+.+.               
T Consensus       255 ~g~Vi~Lv-GpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQL-------r~~Aei---------------  311 (484)
T PRK06995        255 RGGVFALM-GPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQL-------RIYGKI---------------  311 (484)
T ss_pred             CCcEEEEE-CCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHH-------HHHHHH---------------
Confidence            45788888 5568999999999999886 455 5999999998632211100       000010               


Q ss_pred             ccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCC--HHH---HHHHhcC---CeEEEEeCC
Q 047623          127 RWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGID--AGF---ITAITPA---NEAVLVTTP  198 (340)
Q Consensus       127 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~--~~~---~~~l~~a---d~viiv~~~  198 (340)
                        -++.+...          ....+.   ...+.+  ..++|+++||+++...  ...   ...+...   ...++++..
T Consensus       312 --lGVpv~~~----------~~~~Dl---~~aL~~--L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdA  374 (484)
T PRK06995        312 --LGVPVHAV----------KDAADL---RLALSE--LRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNA  374 (484)
T ss_pred             --hCCCeecc----------CCchhH---HHHHHh--ccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeC
Confidence              00000000          001111   112222  1258999999988432  111   1122221   234555544


Q ss_pred             ChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623          199 DITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL  253 (340)
Q Consensus       199 ~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~  253 (340)
                      . .....+.+..+.+..  ....++|+|+.+...    ..-.+..+...+++++.
T Consensus       375 t-~~~~~l~~i~~~f~~--~~~~g~IlTKlDet~----~~G~~l~i~~~~~lPI~  422 (484)
T PRK06995        375 T-SHGDTLNEVVQAYRG--PGLAGCILTKLDEAA----SLGGALDVVIRYKLPLH  422 (484)
T ss_pred             C-CcHHHHHHHHHHhcc--CCCCEEEEeCCCCcc----cchHHHHHHHHHCCCeE
Confidence            3 223444445554444  345689999999875    33345577777887765

>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []

Probab=98.34  E-value=1.8e-06  Score=61.94  Aligned_cols=62  Identities=26%  Similarity=0.401  Sum_probs=48.9

Q ss_pred             CEEEEcCCCCCCHHHHHHHhc--CCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEeccc
Q 047623          168 DFILIDCPAGIDAGFITAITP--ANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVR  229 (340)
Q Consensus       168 D~VIiD~~~~~~~~~~~~l~~--ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~  229 (340)
                      ||+|||+||+.++.....+..  .+..++|++|...++..+++.++.+++.+.+.+|+|-|+..
T Consensus         2 D~LiiD~PPGTgD~~l~~~~~~~~~g~ivVTTPq~la~~dv~r~~~~~~~~~vpilGvVENMs~   65 (81)
T PF10609_consen    2 DYLIIDLPPGTGDEHLTLMQYLPIDGAIVVTTPQELALADVRRAIDMFRKLNVPILGVVENMSY   65 (81)
T ss_dssp             CEEEEE--SCSSSHHHHHHHHH--SEEEEEE-CCC--HHHHHHHHHHHHCTT-EEEEEEECT-E
T ss_pred             CEEEEeCCCCCCcHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhcCCCcEEEEECCCc
Confidence            899999999998877776643  68899999999999999999999999999999999999954

It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.

>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.24  E-value=1.2e-05  Score=75.52  Aligned_cols=153  Identities=19%  Similarity=0.271  Sum_probs=95.8

Q ss_pred             CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccc
Q 047623           47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDK  126 (340)
Q Consensus        47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  126 (340)
                      .+.+-+|+|. +--||||||--+-+|+||-+.+++|++.-||....+.-.-++.+-+   .+..+ .+  +.-+      
T Consensus       375 ~krPYVi~fv-GVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~---rl~~l-~~--~~v~------  441 (587)
T KOG0781|consen  375 RKRPYVISFV-GVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVE---RLSAL-HG--TMVE------  441 (587)
T ss_pred             cCCCeEEEEE-eecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHH---HHHHh-cc--chhH------
Confidence            3466788888 5678999999999999999999999999999864544333322211   11111 00  0000      


Q ss_pred             ccCceeEeecCCCCCCCCCCcchhh---HHHHHHHHHHhccCCCCEEEEcCCCCC--CHHHHHHH------hcCCeEEEE
Q 047623          127 RWSNFELLCISKPRSKLPLGFGGKA---LTWVVEALKSRQEGSPDFILIDCPAGI--DAGFITAI------TPANEAVLV  195 (340)
Q Consensus       127 ~~~~l~~l~~~~~~~~~~~~~~~~~---~~~l~~~l~~~~~~~~D~VIiD~~~~~--~~~~~~~l------~~ad~viiv  195 (340)
                            +.         ...++.+.   ....++..++   ..||+|+|||++.+  +...+..|      ...|.|+.|
T Consensus       442 ------lf---------ekGYgkd~a~vak~AI~~a~~---~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~v  503 (587)
T KOG0781|consen  442 ------LF---------EKGYGKDAAGVAKEAIQEARN---QGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFV  503 (587)
T ss_pred             ------HH---------hhhcCCChHHHHHHHHHHHHh---cCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEe
Confidence                  00         00011111   2234444444   48999999999965  22222222      357999999


Q ss_pred             eCC--ChhhHHHHHHHHHHHHhcCCC--ceEEEEecccC
Q 047623          196 TTP--DITSLRDADRVTGLLECDGIR--DIKMVVNRVRT  230 (340)
Q Consensus       196 ~~~--~~~s~~~~~~~~~~l~~~~~~--~~~vviN~~~~  230 (340)
                      -++  +..++..+..+-+.+.....+  .=++++.+++.
T Consensus       504 gealvg~dsv~q~~~fn~al~~~~~~r~id~~~ltk~dt  542 (587)
T KOG0781|consen  504 GEALVGNDSVDQLKKFNRALADHSTPRLIDGILLTKFDT  542 (587)
T ss_pred             hhhhhCcHHHHHHHHHHHHHhcCCCccccceEEEEeccc
Confidence            877  566788888888888754432  34688888875

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=98.21  E-value=2.5e-05  Score=72.73  Aligned_cols=157  Identities=22%  Similarity=0.240  Sum_probs=94.5

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHH--HCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccc
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLA--RLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKR  127 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la--~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  127 (340)
                      +++|+++ +-.||||||+.+-||+.+.  ...++|.+|-+|...-+...-+       .+..+++.-+            
T Consensus       203 ~~vi~LV-GPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQL-------k~Ya~im~vp------------  262 (407)
T COG1419         203 KRVIALV-GPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQL-------KTYADIMGVP------------  262 (407)
T ss_pred             CcEEEEE-CCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHH-------HHHHHHhCCc------------
Confidence            6788888 5568999999999999999  4578999999996522221111       1111221110            


Q ss_pred             cCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCC--CHHHH----HHHhc--CCeEEEEeCCC
Q 047623          128 WSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGI--DAGFI----TAITP--ANEAVLVTTPD  199 (340)
Q Consensus       128 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~--~~~~~----~~l~~--ad~viiv~~~~  199 (340)
                         +.            ....+.++...+..+.+     +|+|+|||.+.-  +....    +.+..  ...+.+|+.. 
T Consensus       263 ---~~------------vv~~~~el~~ai~~l~~-----~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsa-  321 (407)
T COG1419         263 ---LE------------VVYSPKELAEAIEALRD-----CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSA-  321 (407)
T ss_pred             ---eE------------EecCHHHHHHHHHHhhc-----CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEec-
Confidence               00            11344566666777765     899999999832  33222    22222  3445555544 


Q ss_pred             hhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623          200 ITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL  253 (340)
Q Consensus       200 ~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~  253 (340)
                      ......++++++.++..  +.-++|+++.+...    .+-+.-.+....+.|+.
T Consensus       322 t~K~~dlkei~~~f~~~--~i~~~I~TKlDET~----s~G~~~s~~~e~~~PV~  369 (407)
T COG1419         322 TTKYEDLKEIIKQFSLF--PIDGLIFTKLDETT----SLGNLFSLMYETRLPVS  369 (407)
T ss_pred             CcchHHHHHHHHHhccC--CcceeEEEcccccC----chhHHHHHHHHhCCCeE
Confidence            33445666677766653  45689999998865    22233345555666655

>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]

Probab=98.15  E-value=1.1e-05  Score=76.72  Aligned_cols=207  Identities=17%  Similarity=0.217  Sum_probs=119.1

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhh----cC---CCcccccee
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVL----NG---DCRLDQALV  123 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l----~~---~~~~~~~~~  123 (340)
                      +.|.|.|+...+|||++++.|...++++|++|.-  +..|+-++..+-..... ..+...++    .+   ...++..+.
T Consensus         2 ~~iMv~GT~S~~GKS~~~aglcRi~~~~G~~V~P--FK~QNMsLNs~it~~G~-EIgraQ~~QA~Aa~i~p~v~mNPvLL   78 (486)
T COG1492           2 KAIMVQGTTSDAGKSFLVAGLCRILARRGYRVAP--FKSQNMSLNSAITPGGG-EIGRAQALQALAAGIEPSVHMNPVLL   78 (486)
T ss_pred             CccEEEeccCCcchhhhhhhhhHHHHhcCCccCC--CchhhcccccEECCCCc-EEehhhhHHHHHcCCCCccccCCEEE
Confidence            3678888999999999999999999999999965  34444444433322211 11222222    22   234556666


Q ss_pred             cccccCceeEeecCCCCCCCCCC--c---chhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHH--------HHHHhcCC
Q 047623          124 RDKRWSNFELLCISKPRSKLPLG--F---GGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGF--------ITAITPAN  190 (340)
Q Consensus       124 ~~~~~~~l~~l~~~~~~~~~~~~--~---~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~--------~~~l~~ad  190 (340)
                      +.+..-+..++.-+.........  .   ....+..+.+.+. .+.+.||+|++...++.....        ......+|
T Consensus        79 KP~sd~~sQVIv~G~~~G~~s~~~yy~~~~~~l~~~v~~s~~-~l~~~~d~Vv~EGAGSpaEiNlr~~Di~Nm~~a~~~d  157 (486)
T COG1492          79 KPCSDTGSQVIVMGKDIGRKSAVEYYQEGKGLLWVAVKESLE-RLDREYDVVVIEGAGSPAEINLRDRDIANMGVAEIAD  157 (486)
T ss_pred             eecCCCceEEEEecccccccChHHHHHHHHHHHHHHHHHHHH-HhhhcccEEEEecCCChhhcCcccccccceeeehhcC
Confidence            65543456666555544332211  1   1112222333332 245689999999998543211        11222333


Q ss_pred             -eEEEEeCCCh-hhHHHHHHHHHHHHh-cCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHH
Q 047623          191 -EAVLVTTPDI-TSLRDADRVTGLLEC-DGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVI  263 (340)
Q Consensus       191 -~viiv~~~~~-~s~~~~~~~~~~l~~-~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~  263 (340)
                       -+|+|.+-+. ..+..+.-.+..+.+ ......++|+|+++.+...-..  -++.+++.+|.++++++|+.+...
T Consensus       158 apvILV~DIdRGGvfAsl~GT~~lL~~~~r~~VkG~iINkFRGd~~ll~~--gik~Le~~tg~~vlGv~P~~~~~~  231 (486)
T COG1492         158 APVILVGDIDRGGVFASLYGTLALLPESDRALVKGFIINKFRGDESLLDP--GLKWLEELTGVPVLGVLPYLKDAL  231 (486)
T ss_pred             CCEEEEEeecccceeeeeeehheecCHhHhcceeEEEEeeeCCCHHHHhh--HHHHHHHhhCCeeEeecccccccc
Confidence             2666666654 222333333333332 2335688999999887532222  377888899999999999877643

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=97.95  E-value=6.8e-05  Score=77.08  Aligned_cols=87  Identities=15%  Similarity=0.222  Sum_probs=62.6

Q ss_pred             CCCEEEEcCCCCCCHH------HHHHHhcCC-eEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCccccccc
Q 047623          166 SPDFILIDCPAGIDAG------FITAITPAN-EAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDM  238 (340)
Q Consensus       166 ~~D~VIiD~~~~~~~~------~~~~l~~ad-~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~  238 (340)
                      .+|++||.+.+++..+      +...+..-+ -+|+|+.....+|+.+...++.+...+++..++|+|...        .
T Consensus       184 ~~d~vlVEGAGGl~vPl~~~~~~~Dl~~~l~lPvILV~~~~LG~INhtllt~eaL~~rGi~v~gii~~~~~--------~  255 (817)
T PLN02974        184 GRVLALVETAGGVASPGPSGTLQCDLYRPLRLPAILVGDGRLGGISATLAAYESLLLRGYDVVAVVIEDHG--------L  255 (817)
T ss_pred             cCCeEEEECCCcccccCCCCCCHHHHHHHhCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEeCCc--------c
Confidence            5899999999976322      233333222 399999999999999999999999999999999999532        1


Q ss_pred             ccHHHHHHHh--CCcee--EEecCCh
Q 047623          239 MSVLDIQEML--GLALL--GVIPEDS  260 (340)
Q Consensus       239 ~~~~~i~~~~--g~~v~--~~Ip~d~  260 (340)
                      .+.+.+++.+  +.+++  ..+|.++
T Consensus       256 ~N~~~l~~~~~~~~pv~~lp~~p~~~  281 (817)
T PLN02974        256 SNEKALLSYLSNRVPVFVLPPVPEDP  281 (817)
T ss_pred             chHHHHHHHHhcCCcEEeCCCCCCCc
Confidence            3344555543  77776  3466554

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=97.89  E-value=5.6e-05  Score=66.33  Aligned_cols=111  Identities=22%  Similarity=0.311  Sum_probs=65.1

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccc
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKR  127 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  127 (340)
                      +...+|.|. +-.|+||||+...|-.++.+++.+.-+|.+||.-.++.+-.+++..+...-.          +....+.-
T Consensus        17 ~~p~~ilVv-GMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYk----------EvMkqY~L   85 (366)
T KOG1532|consen   17 QRPVIILVV-GMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYK----------EVMKQYQL   85 (366)
T ss_pred             cCCcEEEEE-ecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHH----------HHHHHhCC
Confidence            344566666 6788999999999999999999999999999875555544433322111111          11111111


Q ss_pred             cCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCC
Q 047623          128 WSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGI  178 (340)
Q Consensus       128 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~  178 (340)
                      .||-.++        ....+-...+.++++.+.+. .+.+||+|||||+.+
T Consensus        86 GPNGgI~--------TsLNLF~tk~dqv~~~iek~-~~~~~~~liDTPGQI  127 (366)
T KOG1532|consen   86 GPNGGIV--------TSLNLFATKFDQVIELIEKR-AEEFDYVLIDTPGQI  127 (366)
T ss_pred             CCCcchh--------hhHHHHHHHHHHHHHHHHHh-hcccCEEEEcCCCce
Confidence            1222211        00011223444445555442 336999999999954

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=97.88  E-value=1.3e-05  Score=70.84  Aligned_cols=103  Identities=24%  Similarity=0.315  Sum_probs=53.3

Q ss_pred             CCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCceeEeecC
Q 047623           58 GKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNFELLCIS  137 (340)
Q Consensus        58 ~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~l~~~  137 (340)
                      +-.|+||||.+.++..++...|++|.+|.+||....+.+-...+-++-.+..+++....          -.||-.++.  
T Consensus         3 GpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y~~~iDird~i~~~evm~~~~----------LGPNGal~~--   70 (238)
T PF03029_consen    3 GPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPYPPDIDIRDLISVEEVMEEYG----------LGPNGALIY--   70 (238)
T ss_dssp             ESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS--SEEGGGT--HHHHHTT-T------------HHHHHHH--
T ss_pred             CCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcccccCchHHHHhhhhhhhhhhhcC----------cCCcHHHHH--
Confidence            44699999999999999999999999999999866665554444333344444433210          001211110  


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHH
Q 047623          138 KPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAG  181 (340)
Q Consensus       138 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~  181 (340)
                            ....-...+.++.+.+.+.   +-+|+|+|||+.....
T Consensus        71 ------~me~l~~~~d~l~~~i~~~---~~~y~l~DtPGQiElf  105 (238)
T PF03029_consen   71 ------CMEYLEENIDWLDEEIEKY---EDDYLLFDTPGQIELF  105 (238)
T ss_dssp             ------HHHHHGGGHHHHHHHHHHH---H-SEEEEE--SSHHHH
T ss_pred             ------HHHHHHHHHHHHHHHHhhc---CCcEEEEeCCCCEEEE
Confidence                  0011223445566666553   2499999999976543

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]

Probab=97.81  E-value=0.00021  Score=66.35  Aligned_cols=46  Identities=33%  Similarity=0.376  Sum_probs=37.9

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCc
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNL   94 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l   94 (340)
                      ....++.+.|++ ++||||+++-||-.+-++|++|.+||+|+-.+.+
T Consensus        71 ~~~~~vmvvG~v-DSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei  116 (398)
T COG1341          71 GKVGVVMVVGPV-DSGKSTLTTYLANKLLARGRKVAIIDADVGQSEI  116 (398)
T ss_pred             cCCcEEEEECCc-CcCHHHHHHHHHHHHhhcCceEEEEeCCCCCccc
Confidence            344567777555 6799999999999999999999999999864554

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=97.68  E-value=7.9e-05  Score=63.98  Aligned_cols=101  Identities=25%  Similarity=0.380  Sum_probs=65.3

Q ss_pred             CCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCceeEeecC
Q 047623           58 GKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNFELLCIS  137 (340)
Q Consensus        58 ~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~l~~~  137 (340)
                      +-.|+||||-...+...++..|.+|.+|.+||.+.++.+-.+..-..-.++.+++..          ..-.||..+... 
T Consensus         9 GPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~edvm~~----------~~LGPNg~l~yc-   77 (290)
T KOG1533|consen    9 GPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITVEDVMEE----------LGLGPNGALKYC-   77 (290)
T ss_pred             cCCCCCccchhhhHHHHHHHhCCceEEEecCCcccCCCCCCcccHHHHccHHHHHHH----------hCCCCchhHHHH-
Confidence            678999999999999999999999999999999888777665543323333333321          111122211100 


Q ss_pred             CCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCC
Q 047623          138 KPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGID  179 (340)
Q Consensus       138 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~  179 (340)
                             ...-...+.+++..++.   .+..|+|+|||+.+.
T Consensus        78 -------~E~l~~~idwl~~~l~~---~~~~Y~lFDcPGQVE  109 (290)
T KOG1533|consen   78 -------MEYLEANIDWLLEKLKP---LTDHYVLFDCPGQVE  109 (290)
T ss_pred             -------HHHHHhhhHHHHHHhhh---ccCcEEEEeCCCcEE
Confidence                   00112344566666665   278899999999653

>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate

Probab=97.67  E-value=8.9e-05  Score=70.71  Aligned_cols=54  Identities=24%  Similarity=0.326  Sum_probs=48.5

Q ss_pred             CCCCEEEEEEcCCC---CCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCC
Q 047623           47 GETPRVVVITSGKG---GVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENR  103 (340)
Q Consensus        47 ~~~~~iI~v~s~kG---GvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~  103 (340)
                      ++.+|+|.|+|.-.   |.||||+++|||..|++.|++|+++   .+.+++...||.+..
T Consensus        35 ~~~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gkk~l~~---LR~PSlg~~fg~kgg   91 (524)
T cd00477          35 RPDGKLILVTAITPTPAGEGKTTTTIGLAQALNAHGKKAIAC---LREPSLGPTFGIKGG   91 (524)
T ss_pred             CCCCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEE---EecCCcCcccCCCCC
Confidence            45689999999998   9999999999999999999999988   777999999987754

FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.

>cd04169 RF3 RF3 subfamily

Probab=97.63  E-value=0.00089  Score=60.25  Aligned_cols=89  Identities=19%  Similarity=0.202  Sum_probs=59.6

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHH
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLD  243 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~  243 (340)
                      ++.+.++|||+...  ......+..+|.+++|+.....--....++.+.+...+.+ +.+++|+.+.......  ....+
T Consensus        70 ~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P-~iivvNK~D~~~a~~~--~~~~~  146 (267)
T cd04169          70 DCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIP-IITFINKLDREGRDPL--ELLDE  146 (267)
T ss_pred             CEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCC-EEEEEECCccCCCCHH--HHHHH
Confidence            58899999999643  3356677889999999987543333445566666555555 6789999986432111  12567


Q ss_pred             HHHHhCCcee-EEec
Q 047623          244 IQEMLGLALL-GVIP  257 (340)
Q Consensus       244 i~~~~g~~v~-~~Ip  257 (340)
                      +++.++.+.+ ..+|
T Consensus       147 l~~~l~~~~~~~~~P  161 (267)
T cd04169         147 IEEELGIDCTPLTWP  161 (267)
T ss_pred             HHHHHCCCceeEEec
Confidence            8888887765 4555

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd01884 EF_Tu EF-Tu subfamily

Probab=97.61  E-value=0.0009  Score=57.26  Aligned_cols=65  Identities=18%  Similarity=0.281  Sum_probs=49.9

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccC
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRT  230 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~  230 (340)
                      .+.++++|||+..  .......+..+|.+++|+.....-.....+++..+...+.+.+.+++|+.+.
T Consensus        64 ~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~  130 (195)
T cd01884          64 NRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADM  130 (195)
T ss_pred             CeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCC
Confidence            4678999999853  2334566788999999999876545566777888887777777889999986

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=97.57  E-value=0.00081  Score=60.59  Aligned_cols=90  Identities=18%  Similarity=0.134  Sum_probs=61.9

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHH
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLD  243 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~  243 (340)
                      ++.+.++|||+...  ......+..+|.+++|+.....--....++++.+...+.+. .+++|+.+.....  ......+
T Consensus        63 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~-ivviNK~D~~~a~--~~~~~~~  139 (270)
T cd01886          63 DHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPR-IAFVNKMDRTGAD--FFRVVEQ  139 (270)
T ss_pred             CEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCE-EEEEECCCCCCCC--HHHHHHH
Confidence            47889999998642  33466788999999999886554455667777777766654 5899999965311  1123567


Q ss_pred             HHHHhCCcee-EEecC
Q 047623          244 IQEMLGLALL-GVIPE  258 (340)
Q Consensus       244 i~~~~g~~v~-~~Ip~  258 (340)
                      +.+.++...+ ..+|-
T Consensus       140 l~~~l~~~~~~~~~Pi  155 (270)
T cd01886         140 IREKLGANPVPLQLPI  155 (270)
T ss_pred             HHHHhCCCceEEEecc
Confidence            7788876533 55664

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PRK13506 formate--tetrahydrofolate ligase; Provisional

Probab=97.57  E-value=0.00014  Score=70.12  Aligned_cols=54  Identities=24%  Similarity=0.347  Sum_probs=48.7

Q ss_pred             CCCCEEEEEEcCCC---CCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCC
Q 047623           47 GETPRVVVITSGKG---GVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENR  103 (340)
Q Consensus        47 ~~~~~iI~v~s~kG---GvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~  103 (340)
                      ++.+|+|.|+|.-.   |.||||++++||..|++.|++|  ||+ .+.+++...||.+..
T Consensus        51 ~~~~k~IlVTs~~PTp~GEGKTT~si~La~~la~~Gk~~--i~~-LR~Pslg~~fg~kgg  107 (578)
T PRK13506         51 KPKGKLVLVTAITPTPLGEGKTVTTIGLTQGLNALGQKV--CAC-IRQPSMGPVFGVKGG  107 (578)
T ss_pred             CCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHHHhCCce--EEE-eccCCcCCccCCCCC
Confidence            45689999999888   9999999999999999999999  888 888999999987754

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=97.56  E-value=0.00023  Score=58.60  Aligned_cols=38  Identities=29%  Similarity=0.325  Sum_probs=32.7

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      +|.|+|. .|+||||++..|+..+.++|++|.+|+.|..
T Consensus         1 vi~i~G~-~gsGKTtl~~~l~~~l~~~G~~V~viK~~~~   38 (155)
T TIGR00176         1 VLQIVGP-KNSGKTTLIERLVKALKARGYRVATIKHDHH   38 (155)
T ss_pred             CEEEECC-CCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence            4667755 4999999999999999999999999998743

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.54  E-value=0.01  Score=56.65  Aligned_cols=159  Identities=20%  Similarity=0.151  Sum_probs=86.4

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHH-HC-CCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecc
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLA-RL-GFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRD  125 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la-~~-g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  125 (340)
                      ..+.+|++. +.-|+||||+..-||..+. .. +.++.++-+|....+....+       ..+.+++             
T Consensus       189 ~~g~vi~lv-GpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL-------~~~a~il-------------  247 (420)
T PRK14721        189 EQGGVYALI-GPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQL-------RIYGKLL-------------  247 (420)
T ss_pred             CCCcEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHH-------HHHHHHc-------------
Confidence            456788888 6778999999999998654 33 47888888876422111000       0000110             


Q ss_pred             cccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCC--HHH---HHHHhc---CCeEEEEeC
Q 047623          126 KRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGID--AGF---ITAITP---ANEAVLVTT  197 (340)
Q Consensus       126 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~--~~~---~~~l~~---ad~viiv~~  197 (340)
                          ++.+..          .....++...+..+.     ++|+|+||+++...  ...   ...+..   ...+++|+.
T Consensus       248 ----Gvp~~~----------v~~~~dl~~al~~l~-----~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~  308 (420)
T PRK14721        248 ----GVSVRS----------IKDIADLQLMLHELR-----GKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLN  308 (420)
T ss_pred             ----CCceec----------CCCHHHHHHHHHHhc-----CCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEc
Confidence                111100          011222233333333     59999999986332  111   222322   345667666


Q ss_pred             CChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623          198 PDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL  253 (340)
Q Consensus       198 ~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~  253 (340)
                      .. ..-..+.+++..+..  ...-++|+++.+...    ..-.+..+....++++.
T Consensus       309 at-~~~~~~~~~~~~f~~--~~~~~~I~TKlDEt~----~~G~~l~~~~~~~lPi~  357 (420)
T PRK14721        309 AT-SSGDTLDEVISAYQG--HGIHGCIITKVDEAA----SLGIALDAVIRRKLVLH  357 (420)
T ss_pred             CC-CCHHHHHHHHHHhcC--CCCCEEEEEeeeCCC----CccHHHHHHHHhCCCEE
Confidence            54 223334444444443  456789999999876    22334566677777766

>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]

Probab=97.50  E-value=0.00055  Score=56.33  Aligned_cols=41  Identities=22%  Similarity=0.245  Sum_probs=36.9

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      |+++++|+|.| ++||||+...|...|.++|++|..|.-...
T Consensus         1 m~~Il~ivG~k-~SGKTTLie~lv~~L~~~G~rVa~iKH~hh   41 (161)
T COG1763           1 MMKILGIVGYK-NSGKTTLIEKLVRKLKARGYRVATVKHAHH   41 (161)
T ss_pred             CCcEEEEEecC-CCChhhHHHHHHHHHHhCCcEEEEEEecCC
Confidence            67899999665 569999999999999999999999988766

>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional

Probab=97.46  E-value=0.00043  Score=65.51  Aligned_cols=40  Identities=30%  Similarity=0.287  Sum_probs=35.9

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      |++|+|+|.| |+||||+...|...|.++|++|.+|.-+-+
T Consensus         1 MkVi~IvG~s-gSGKTTLiekLI~~L~~rG~rVavIKH~hH   40 (452)
T PRK14495          1 MRVYGIIGWK-DAGKTGLVERLVAAIAARGFSVSTVKHSHH   40 (452)
T ss_pred             CcEEEEEecC-CCCHHHHHHHHHHHHHhCCCeEEEEeccCc
Confidence            5799999876 999999999999999999999999887543

>PRK08233 hypothetical protein; Provisional

Probab=97.44  E-value=0.0011  Score=55.61  Aligned_cols=38  Identities=24%  Similarity=0.223  Sum_probs=29.9

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      +.+|+|.|+. |+||||+|..||..+.  +..++..|.+..
T Consensus         3 ~~iI~I~G~~-GsGKtTla~~L~~~l~--~~~~~~~d~~~~   40 (182)
T PRK08233          3 TKIITIAAVS-GGGKTTLTERLTHKLK--NSKALYFDRYDF   40 (182)
T ss_pred             ceEEEEECCC-CCCHHHHHHHHHhhCC--CCceEEECCEEc
Confidence            4788888766 9999999999998874  347777777754

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=97.43  E-value=0.00062  Score=59.55  Aligned_cols=40  Identities=30%  Similarity=0.429  Sum_probs=34.5

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      +.+.++.++ +.+|+|||+++.++|...++.|.+|+++|++
T Consensus        21 ~~g~i~~i~-G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e   60 (225)
T PRK09361         21 ERGTITQIY-GPPGSGKTNICLQLAVEAAKNGKKVIYIDTE   60 (225)
T ss_pred             CCCeEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence            334555555 7999999999999999999999999999999

>PHA02542 41 41 helicase; Provisional

Probab=97.41  E-value=0.0002  Score=69.45  Aligned_cols=45  Identities=13%  Similarity=0.248  Sum_probs=38.9

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCch
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLD   95 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~   95 (340)
                      .-+.+.++..|+||||+|.|+|..+++.|++|++++++.....+.
T Consensus       190 G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fSLEM~~~ql~  234 (473)
T PHA02542        190 KTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYISMEMAEEVIA  234 (473)
T ss_pred             CcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEeccCCHHHHH
Confidence            456777799999999999999999998899999999998755443

>cd04167 Snu114p Snu114p subfamily

Probab=97.31  E-value=0.0012  Score=57.23  Aligned_cols=64  Identities=22%  Similarity=0.295  Sum_probs=44.5

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccC
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRT  230 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~  230 (340)
                      .+.+.|+|+|+...  ......+..+|.+++|+...........+.++.+...+ ..+.+|+|+.+.
T Consensus        70 ~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~-~p~iiviNK~D~  135 (213)
T cd04167          70 SYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEG-LPIVLVINKIDR  135 (213)
T ss_pred             EEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcC-CCEEEEEECccc
Confidence            47889999999653  34566778999999999875443233344445554444 457799999986

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PRK12740 elongation factor G; Reviewed

Probab=97.30  E-value=0.0018  Score=66.11  Aligned_cols=90  Identities=21%  Similarity=0.207  Sum_probs=62.6

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHH
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLD  243 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~  243 (340)
                      ++++++||||+...  .....++..+|.+++|+++..........+++.+...+.+ ..+|+|+++....  ......++
T Consensus        59 ~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~D~~~~--~~~~~~~~  135 (668)
T PRK12740         59 GHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVP-RIIFVNKMDRAGA--DFFRVLAQ  135 (668)
T ss_pred             CEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCC-EEEEEECCCCCCC--CHHHHHHH
Confidence            58999999999754  4456678899999999998766555556666666665554 5579999986531  12234567


Q ss_pred             HHHHhCCcee-EEecC
Q 047623          244 IQEMLGLALL-GVIPE  258 (340)
Q Consensus       244 i~~~~g~~v~-~~Ip~  258 (340)
                      +.+.++.+.+ ..+|.
T Consensus       136 l~~~l~~~~~~~~~p~  151 (668)
T PRK12740        136 LQEKLGAPVVPLQLPI  151 (668)
T ss_pred             HHHHHCCCceeEEecc
Confidence            7777887654 44553

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=97.29  E-value=0.0018  Score=56.98  Aligned_cols=42  Identities=21%  Similarity=0.361  Sum_probs=35.5

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      +.+.++.++ +..|+|||+++.++++..+++|.+|++++++..
T Consensus        23 ~~g~~~~i~-G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~   64 (234)
T PRK06067         23 PFPSLILIE-GDHGTGKSVLSQQFVYGALKQGKKVYVITTENT   64 (234)
T ss_pred             cCCcEEEEE-CCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCC
Confidence            344566666 799999999999999988889999999999754

>PRK00089 era GTPase Era; Reviewed

Probab=97.27  E-value=0.0067  Score=55.26  Aligned_cols=65  Identities=12%  Similarity=0.163  Sum_probs=42.2

Q ss_pred             CCCEEEEcCCCCCCH----------HHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGIDA----------GFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~~----------~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      +++++++|||+....          .....+..+|.++++++.+..--.....+.+.+...+ ..+.+|+|+++..
T Consensus        52 ~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~-~pvilVlNKiDl~  126 (292)
T PRK00089         52 DAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVK-TPVILVLNKIDLV  126 (292)
T ss_pred             CceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcC-CCEEEEEECCcCC
Confidence            478899999985321          1233567899999999886522233345555555333 3577999999864

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.24  E-value=0.00084  Score=54.21  Aligned_cols=38  Identities=32%  Similarity=0.338  Sum_probs=31.1

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEE-EEecCC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVV-AIDADV   89 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vl-liD~D~   89 (340)
                      ++|.|.|.| |+||||++..|...|.++|++|+ +.|.|.
T Consensus         1 pvv~VvG~~-~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~   39 (140)
T PF03205_consen    1 PVVQVVGPK-NSGKTTLIRKLINELKRRGYRVAVIKHTDH   39 (140)
T ss_dssp             -EEEEEEST-TSSHHHHHHHHHHHHHHTT--EEEEEE-ST
T ss_pred             CEEEEECCC-CCCHHHHHHHHHHHHhHcCCceEEEEEccC
Confidence            478899876 89999999999999999999999 888887

>cd00881 GTP_translation_factor GTP translation factor family

Probab=97.21  E-value=0.0036  Score=52.48  Aligned_cols=65  Identities=17%  Similarity=0.216  Sum_probs=46.3

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      .++++++|+|+...  ......+..+|.++++++..........+.+..+.. ....+.+++|+.+..
T Consensus        61 ~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~-~~~~i~iv~nK~D~~  127 (189)
T cd00881          61 DRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIARE-GGLPIIVAINKIDRV  127 (189)
T ss_pred             CEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH-CCCCeEEEEECCCCc
Confidence            47899999998442  344556778999999998875544445555666655 335688999998864

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>COG1159 Era GTPase [General function prediction only]

Probab=97.15  E-value=0.0052  Score=55.02  Aligned_cols=113  Identities=17%  Similarity=0.227  Sum_probs=76.0

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWS  129 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  129 (340)
                      +..+++. ++..+||||+.-+|      .|.++.++.--+| .+-....|+..                           
T Consensus         6 sGfVaIi-GrPNvGKSTLlN~l------~G~KisIvS~k~Q-TTR~~I~GI~t---------------------------   50 (298)
T COG1159           6 SGFVAII-GRPNVGKSTLLNAL------VGQKISIVSPKPQ-TTRNRIRGIVT---------------------------   50 (298)
T ss_pred             EEEEEEE-cCCCCcHHHHHHHH------hcCceEeecCCcc-hhhhheeEEEE---------------------------
Confidence            4456777 89999999998665      3789999876666 22222111110                           


Q ss_pred             ceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCC------C----HHHHHHHhcCCeEEEEeCCC
Q 047623          130 NFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGI------D----AGFITAITPANEAVLVTTPD  199 (340)
Q Consensus       130 ~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~------~----~~~~~~l~~ad~viiv~~~~  199 (340)
                                                        .+++.+|++|||+--      +    .....++..+|.++.+++.+
T Consensus        51 ----------------------------------~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~   96 (298)
T COG1159          51 ----------------------------------TDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDAD   96 (298)
T ss_pred             ----------------------------------cCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEecc
Confidence                                              114889999999832      1    22345667899999999987


Q ss_pred             hhhHHHHHHHHHHHHhcCCCceEEEEecccCCc
Q 047623          200 ITSLRDADRVTGLLECDGIRDIKMVVNRVRTDM  232 (340)
Q Consensus       200 ~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~  232 (340)
                      ..--..-..+++.+.. ......+++|+++.-.
T Consensus        97 ~~~~~~d~~il~~lk~-~~~pvil~iNKID~~~  128 (298)
T COG1159          97 EGWGPGDEFILEQLKK-TKTPVILVVNKIDKVK  128 (298)
T ss_pred             ccCCccHHHHHHHHhh-cCCCeEEEEEccccCC
Confidence            7444466667777766 2246779999998654

>PRK04296 thymidine kinase; Provisional

Probab=97.11  E-value=0.012  Score=50.17  Aligned_cols=36  Identities=19%  Similarity=0.296  Sum_probs=30.0

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEe
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAID   86 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD   86 (340)
                      +.++.++ +.-|+||||.+..++..++.+|.+|+++.
T Consensus         2 g~i~lit-G~~GsGKTT~~l~~~~~~~~~g~~v~i~k   37 (190)
T PRK04296          2 AKLEFIY-GAMNSGKSTELLQRAYNYEERGMKVLVFK   37 (190)
T ss_pred             cEEEEEE-CCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence            4445554 66799999999999999999999999993

>cd04163 Era Era subfamily

Probab=97.11  E-value=0.011  Score=48.03  Aligned_cols=65  Identities=14%  Similarity=0.203  Sum_probs=42.0

Q ss_pred             CCCEEEEcCCCCCCH----------HHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGIDA----------GFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~~----------~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      .++++++|+|+....          .....+..+|.+++++............+.+.+...+ ..+.+|+|+.+..
T Consensus        50 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~-~~~iiv~nK~Dl~  124 (168)
T cd04163          50 DAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSK-TPVILVLNKIDLV  124 (168)
T ss_pred             CeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhC-CCEEEEEEchhcc
Confidence            378999999884321          1223456789999998887653333445555555433 3567999999764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=97.10  E-value=0.0076  Score=59.43  Aligned_cols=85  Identities=16%  Similarity=0.198  Sum_probs=58.5

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHH
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLD  243 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~  243 (340)
                      .+.+.++|||+..  ...+...+..+|.+++|++....--..+.++.+.++..+.+ +.+++|+.+.....  ......+
T Consensus        78 ~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iP-iiv~iNK~D~~~a~--~~~~l~~  154 (526)
T PRK00741         78 DCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTP-IFTFINKLDRDGRE--PLELLDE  154 (526)
T ss_pred             CEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCC-EEEEEECCcccccC--HHHHHHH
Confidence            4788999999964  33456678899999999988654444556666766666655 67899999864311  1122567


Q ss_pred             HHHHhCCcee
Q 047623          244 IQEMLGLALL  253 (340)
Q Consensus       244 i~~~~g~~v~  253 (340)
                      +++.++.+++
T Consensus       155 i~~~l~~~~~  164 (526)
T PRK00741        155 IEEVLGIACA  164 (526)
T ss_pred             HHHHhCCCCe
Confidence            7777886544

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=97.10  E-value=0.0026  Score=53.62  Aligned_cols=37  Identities=22%  Similarity=0.162  Sum_probs=33.5

Q ss_pred             EEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           54 VITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        54 ~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      .+..+..|+|||+++.+++...++.|.+|+++.++..
T Consensus         2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~   38 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEES   38 (187)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCC
Confidence            4556899999999999999999999999999999876

A related protein is found in archaea.

>COG2403 Predicted GTPase [General function prediction only]

Probab=97.09  E-value=0.0042  Score=57.03  Aligned_cols=40  Identities=25%  Similarity=0.409  Sum_probs=36.9

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEec
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDA   87 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~   87 (340)
                      ....+|.|++..-|+|||+++.-+|..|.++|++|+.+-.
T Consensus       124 ~ekPviaV~atrtg~GKsaVS~~v~r~l~ergyrv~vVrh  163 (449)
T COG2403         124 LEKPVIAVTATRTGVGKSAVSRYVARLLRERGYRVCVVRH  163 (449)
T ss_pred             hcCceEEEEEeccccchhHHHHHHHHHHHHcCCceEEEec
Confidence            3447899999999999999999999999999999999976

>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional

Probab=97.07  E-value=0.0012  Score=57.75  Aligned_cols=38  Identities=24%  Similarity=0.262  Sum_probs=34.7

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      |++|.|+|.+ |+||||++..|+..|.++|++|.++..+
T Consensus         1 m~vi~ivG~~-gsGKTtl~~~l~~~L~~~G~~V~viK~~   38 (229)
T PRK14494          1 MRAIGVIGFK-DSGKTTLIEKILKNLKERGYRVATAKHT   38 (229)
T ss_pred             CeEEEEECCC-CChHHHHHHHHHHHHHhCCCeEEEEEec
Confidence            5789999885 9999999999999999999999999754

>TIGR00503 prfC peptide chain release factor 3

Probab=97.07  E-value=0.008  Score=59.31  Aligned_cols=89  Identities=11%  Similarity=0.135  Sum_probs=58.5

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHH
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLD  243 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~  243 (340)
                      ++.+.++|||+..  .......+..+|.+++|++....-...+..+.+.++..+. .+.+++|+.+.....  ...-..+
T Consensus        79 ~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~-PiivviNKiD~~~~~--~~~ll~~  155 (527)
T TIGR00503        79 DCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDT-PIFTFMNKLDRDIRD--PLELLDE  155 (527)
T ss_pred             CeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCC-CEEEEEECccccCCC--HHHHHHH
Confidence            5888999999964  3345667889999999998865434445566666655454 477899999864311  1122456


Q ss_pred             HHHHhCCcee-EEec
Q 047623          244 IQEMLGLALL-GVIP  257 (340)
Q Consensus       244 i~~~~g~~v~-~~Ip  257 (340)
                      +++.++...+ ..+|
T Consensus       156 i~~~l~~~~~~~~~P  170 (527)
T TIGR00503       156 VENELKINCAPITWP  170 (527)
T ss_pred             HHHHhCCCCccEEEE
Confidence            7777776533 3344

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PRK00889 adenylylsulfate kinase; Provisional

Probab=97.05  E-value=0.0014  Score=54.91  Aligned_cols=42  Identities=31%  Similarity=0.423  Sum_probs=35.9

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      +.+.+|.++ +-.|+||||+|..||..+...|.++.++|.|..
T Consensus         2 ~~g~~i~~~-G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~   43 (175)
T PRK00889          2 QRGVTVWFT-GLSGAGKTTIARALAEKLREAGYPVEVLDGDAV   43 (175)
T ss_pred             CCCeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH
Confidence            345677777 677899999999999999988999999999864

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=97.04  E-value=0.013  Score=51.56  Aligned_cols=40  Identities=18%  Similarity=0.405  Sum_probs=34.3

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      +.++.+. +..|+||||++.+++..+++.|.++++++++..
T Consensus        24 g~~~~i~-G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~   63 (230)
T PRK08533         24 GSLILIE-GDESTGKSILSQRLAYGFLQNGYSVSYVSTQLT   63 (230)
T ss_pred             CcEEEEE-CCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence            4456665 788999999999999999999999999998865

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=97.03  E-value=0.0016  Score=53.82  Aligned_cols=40  Identities=28%  Similarity=0.293  Sum_probs=36.0

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      |++|.|.|.+ |+||||++..|...|..+|++|..|..|..
T Consensus         1 m~vi~i~G~~-gsGKTTli~~L~~~l~~~g~~V~~iK~~~~   40 (159)
T cd03116           1 MKVIGFVGYS-GSGKTTLLEKLIPALSARGLRVAVIKHDHH   40 (159)
T ss_pred             CeEEEEECCC-CCCHHHHHHHHHHHHHHcCCcEEEEEecCC
Confidence            5789999775 999999999999999999999999988765

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>PLN03127 Elongation factor Tu; Provisional

Probab=97.01  E-value=0.018  Score=55.69  Aligned_cols=66  Identities=18%  Similarity=0.298  Sum_probs=49.8

Q ss_pred             CCCEEEEcCCCCCCHH--HHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGIDAG--FITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~~~--~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      ++.++++|||+.....  +...+..+|.++++++.+..-.....+.+..+...+.+.+.+++|+++.-
T Consensus       123 ~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv  190 (447)
T PLN03127        123 KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVV  190 (447)
T ss_pred             CeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccC
Confidence            4678999999965322  23455679999999998765456677888888888877777899999864

>TIGR02012 tigrfam_recA protein RecA

Probab=97.01  E-value=0.0052  Score=56.47  Aligned_cols=42  Identities=24%  Similarity=0.233  Sum_probs=36.0

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      +.+.++.|.| ..|+||||+|.+++...++.|.+|++||+...
T Consensus        53 p~G~iteI~G-~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~   94 (321)
T TIGR02012        53 PRGRIIEIYG-PESSGKTTLALHAIAEAQKAGGTAAFIDAEHA   94 (321)
T ss_pred             cCCeEEEEEC-CCCCCHHHHHHHHHHHHHHcCCcEEEEcccch
Confidence            4556777775 58999999999999999999999999999854

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=96.99  E-value=0.0014  Score=53.61  Aligned_cols=39  Identities=33%  Similarity=0.361  Sum_probs=33.6

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      .+|-++ +-.|+||||+|..|...|.+.|.+|.++|.|.-
T Consensus         3 ~vIwlt-GlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~l   41 (156)
T PF01583_consen    3 FVIWLT-GLSGSGKTTLARALERRLFARGIKVYLLDGDNL   41 (156)
T ss_dssp             EEEEEE-SSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHH
T ss_pred             EEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEecCcch
Confidence            456666 788999999999999999999999999999964

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>cd04165 GTPBP1_like GTPBP1-like

Probab=96.99  E-value=0.012  Score=51.41  Aligned_cols=82  Identities=17%  Similarity=0.143  Sum_probs=54.9

Q ss_pred             CCCEEEEcCCCCCCH--HHHHHHh--cCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccH
Q 047623          166 SPDFILIDCPAGIDA--GFITAIT--PANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSV  241 (340)
Q Consensus       166 ~~D~VIiD~~~~~~~--~~~~~l~--~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~  241 (340)
                      .+.+.+||+|+....  .+...+.  .+|.+++++..+..-.....++++.+...+.+ +.+++|+++.-. ........
T Consensus        83 ~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip-~ivvvNK~D~~~-~~~~~~~~  160 (224)
T cd04165          83 SKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIP-VFVVVTKIDLAP-ANILQETL  160 (224)
T ss_pred             CcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCC-EEEEEECccccC-HHHHHHHH
Confidence            578999999986432  2233343  58999999988766667777888888887776 679999998632 11122234


Q ss_pred             HHHHHHhC
Q 047623          242 LDIQEMLG  249 (340)
Q Consensus       242 ~~i~~~~g  249 (340)
                      .++.+.+.
T Consensus       161 ~~l~~~L~  168 (224)
T cd04165         161 KDLKRILK  168 (224)
T ss_pred             HHHHHHhc
Confidence            45555554

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=96.99  E-value=0.004  Score=55.01  Aligned_cols=39  Identities=26%  Similarity=0.234  Sum_probs=32.5

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHH------------CCCcEEEEecCCC
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLAR------------LGFSVVAIDADVG   90 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~------------~g~~VlliD~D~~   90 (340)
                      .++++.+.||+|||+++.++|..+|.            .+.+|++++++..
T Consensus         2 ~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~   52 (239)
T cd01125           2 YVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDP   52 (239)
T ss_pred             ceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCC
Confidence            46777899999999999999998873            3568999988865

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=96.97  E-value=0.006  Score=56.15  Aligned_cols=42  Identities=31%  Similarity=0.351  Sum_probs=35.7

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      +.++++-|. +..|+||||+|.+++...++.|.+|++||+...
T Consensus        53 p~G~iteI~-Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~   94 (325)
T cd00983          53 PKGRIIEIY-GPESSGKTTLALHAIAEAQKLGGTVAFIDAEHA   94 (325)
T ss_pred             cCCeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCCEEEECcccc
Confidence            445666666 579999999999999999999999999998754

RecA couples ATP hydrolysis to DNA strand exchange.

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=96.93  E-value=0.0011  Score=54.66  Aligned_cols=56  Identities=29%  Similarity=0.394  Sum_probs=45.8

Q ss_pred             CCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcC
Q 047623           46 AGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLEN  102 (340)
Q Consensus        46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~  102 (340)
                      ..+.+.+|=++ +=.|+||||+|..|...|.++|++|-++|.|.-..+++.-+|...
T Consensus        19 ~~~~~~viW~T-GLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~   74 (197)
T COG0529          19 KGQKGAVIWFT-GLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSR   74 (197)
T ss_pred             hCCCCeEEEee-cCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCCh
Confidence            34556788888 566889999999999999999999999999986577776666544

>cd01894 EngA1 EngA1 subfamily

Probab=96.93  E-value=0.0075  Score=48.81  Aligned_cols=65  Identities=22%  Similarity=0.200  Sum_probs=42.7

Q ss_pred             CCCEEEEcCCCCCCH----------HHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGIDA----------GFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~~----------~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      .+++.|+|+|+....          .....+..+|.+++++............+.+.+...+ ..+.+|+|+.+..
T Consensus        44 ~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~-~piiiv~nK~D~~  118 (157)
T cd01894          44 GREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSK-KPVILVVNKVDNI  118 (157)
T ss_pred             CeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcC-CCEEEEEECcccC
Confidence            478899999996542          1234567799999998875432222234555555444 5678999999764

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP

Probab=96.91  E-value=0.0038  Score=51.32  Aligned_cols=34  Identities=24%  Similarity=0.348  Sum_probs=27.9

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEec
Q 047623           53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDA   87 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~   87 (340)
                      |-|. +..|.||||.|..+|...+.+|++|+++-+
T Consensus         5 i~vy-~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQF   38 (159)
T cd00561           5 IQVY-TGNGKGKTTAALGLALRALGHGYRVGVVQF   38 (159)
T ss_pred             EEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEEE
Confidence            4444 333999999999999999999999999644

This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=96.89  E-value=0.0071  Score=62.12  Aligned_cols=65  Identities=15%  Similarity=0.227  Sum_probs=47.9

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      +|++.++|||+..  ......++..+|.+++|+.....-......+.+.+...+.+.+ +++|+++..
T Consensus        85 ~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~~  151 (720)
T TIGR00490        85 EYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPV-LFINKVDRL  151 (720)
T ss_pred             ceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEE-EEEEChhcc
Confidence            5899999999964  3456778899999999998755433444556666555566554 999999875

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>cd01394 radB RadB

Probab=96.84  E-value=0.0026  Score=55.32  Aligned_cols=41  Identities=27%  Similarity=0.299  Sum_probs=34.8

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      .+.++.|. +.+|+||||++.++|..++..|.+|+++|++..
T Consensus        18 ~g~i~~i~-G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~   58 (218)
T cd01394          18 RGTVTQVY-GPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGL   58 (218)
T ss_pred             CCeEEEEE-CCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence            34555555 799999999999999999999999999998854

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]

Probab=96.82  E-value=0.006  Score=57.00  Aligned_cols=39  Identities=28%  Similarity=0.492  Sum_probs=34.2

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      ..+...++..|+||||+-.++|..+|+++ +||+|-...+
T Consensus        93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVsGEES  131 (456)
T COG1066          93 GSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVSGEES  131 (456)
T ss_pred             ccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEeCCcC
Confidence            45666779999999999999999999999 9999987755

>PRK07667 uridine kinase; Provisional

Probab=96.82  E-value=0.0031  Score=53.83  Aligned_cols=39  Identities=26%  Similarity=0.239  Sum_probs=35.1

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      .+|++. +-+|+||||+|..|+..+.+.|.+|.++++|..
T Consensus        18 ~iIgI~-G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~   56 (193)
T PRK07667         18 FILGID-GLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY   56 (193)
T ss_pred             EEEEEE-CCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence            677776 788999999999999999999999999999964

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=96.80  E-value=0.0055  Score=53.57  Aligned_cols=40  Identities=28%  Similarity=0.276  Sum_probs=31.8

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEecCCC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARL-GFSVVAIDADVG   90 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~-g~~VlliD~D~~   90 (340)
                      +.++.+. +..|+|||+++.++++..+++ |.+|+++.++..
T Consensus        19 gs~~li~-G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~   59 (226)
T PF06745_consen   19 GSVVLIS-GPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEP   59 (226)
T ss_dssp             TSEEEEE-ESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-
T ss_pred             CcEEEEE-eCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCC
Confidence            3455555 788999999999999999988 999999999866

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []

Probab=96.80  E-value=0.013  Score=54.14  Aligned_cols=44  Identities=20%  Similarity=0.245  Sum_probs=38.1

Q ss_pred             CCCCEEEEEEcC-CCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           47 GETPRVVVITSG-KGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        47 ~~~~~iI~v~s~-kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      ....++|+|.|- -||+|||-++.-||.+|.++|++|.++-=.+.
T Consensus        32 ~~~vpVIsVGNltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGYg   76 (326)
T PF02606_consen   32 RLPVPVISVGNLTVGGTGKTPLVIWLARLLQARGYRPAILSRGYG   76 (326)
T ss_pred             CCCCcEEEEcccccCCCCchHHHHHHHHHHHhcCCceEEEcCCCC
Confidence            345579999885 58999999999999999999999999977765

This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=96.80  E-value=0.008  Score=58.18  Aligned_cols=65  Identities=22%  Similarity=0.316  Sum_probs=51.1

Q ss_pred             CCCEEEEcCCCCCCH--HHHHHHhcCCeEEEEeCCChhhH-------HHHHHHHHHHHhcCCCceEEEEecccC
Q 047623          166 SPDFILIDCPAGIDA--GFITAITPANEAVLVTTPDITSL-------RDADRVTGLLECDGIRDIKMVVNRVRT  230 (340)
Q Consensus       166 ~~D~VIiD~~~~~~~--~~~~~l~~ad~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~~vviN~~~~  230 (340)
                      ++.+.|||+|+....  .+...+..+|.+++|+++.....       ..+.+.+..+...+.+.+.+++|+.+.
T Consensus        84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~  157 (446)
T PTZ00141         84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDD  157 (446)
T ss_pred             CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEcccc
Confidence            588999999996532  33556778999999999875432       467778888888899889999999984

>COG0857 Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only]

Probab=96.80  E-value=0.023  Score=52.86  Aligned_cols=192  Identities=18%  Similarity=0.227  Sum_probs=98.3

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCC-Cccccceecccc
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGD-CRLDQALVRDKR  127 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~  127 (340)
                      |++++.+.+...|+|||+++.+|++.|.++|.+|.++--=.      ...+.+..  .......... ....-     . 
T Consensus         1 m~~~l~l~p~~~~~G~tsi~lgLl~~l~~k~~kva~~kPI~------~~~~~~~~--~~~e~~~~~~~~~l~~-----~-   66 (354)
T COG0857           1 MSRTLLLIPTETGVGKTSISLGLLRALEQKGLKVAYFKPIG------TRTGKDAD--DLTEEDIRATSSSLTY-----A-   66 (354)
T ss_pred             CcceEEEeccCCCccHHHHHHHHHHHHHHcCceeEEEeccc------cccCCccc--hhHHHHHHHhhhhccc-----C-
Confidence            68999999999999999999999999999999999974331      11111110  0111111110 00000     0 


Q ss_pred             cCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCC-C--------CCHHHHHHHhcCCeEEEEeCC
Q 047623          128 WSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPA-G--------IDAGFITAITPANEAVLVTTP  198 (340)
Q Consensus       128 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~-~--------~~~~~~~~l~~ad~viiv~~~  198 (340)
                       +.   ++.............+..+..+++...+..+ ..|++++..-- .        ++......+. |. ++++..+
T Consensus        67 -~~---~~~~~ae~L~~~~~~d~l~e~i~~~y~e~~~-~~~~vv~~g~~~~~~~~~~~~ln~~iA~~Ln-a~-~vlva~~  139 (354)
T COG0857          67 -EP---LVLSFAEVLLSTGQDDVLLEEILANYAELAK-DADVVVVEGDVPTREGPYALDLNYEIAKNLN-AA-AVLVARA  139 (354)
T ss_pred             -cc---cchhhHHHHhccccchHHHHHHHHHHHHHhc-cCceEEeccceeccccCccccccHHHHhhcC-cc-hhhcccc
Confidence             00   0000000111111233345556666665433 45555554422 1        1111112222 33 5556666


Q ss_pred             ChhhHHHHHHHHHHHHh----cCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHH
Q 047623          199 DITSLRDADRVTGLLEC----DGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEV  262 (340)
Q Consensus       199 ~~~s~~~~~~~~~~l~~----~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~  262 (340)
                      ...+......-++....    .+....++|+|+...... ........++.+..+..+.+.+|.++-+
T Consensus       140 ~~~~~~~~~~~i~~~~~~~~~~~~~l~gVv~N~~~~~~~-~~~~~~l~~~~~~~~~~~~~~l~~~~ll  206 (354)
T COG0857         140 LLVTPYELKSRVELALAAFGAAGNNLAGVVINNAPVDEA-GRTEDLLAEFLESSGIAVVGVLPPNRLL  206 (354)
T ss_pred             ccCChhhhhhHHHHHHHHhcccCCceEEEEecCCChhhh-hhhhhHHHHHhhhccccccccCCHHHHh
Confidence            66666665554444432    233678999996655432 2122234455555666777888866554

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=96.75  E-value=0.007  Score=54.45  Aligned_cols=92  Identities=17%  Similarity=0.241  Sum_probs=66.2

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHH
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLD  243 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~  243 (340)
                      .+++.|+|||+..+  .....++..+|.+++|+.++.........+.+.+...+.+ ..+++|+.+....  .......+
T Consensus        63 ~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p-~iivvNK~D~~~~--~~~~~~~~  139 (268)
T cd04170          63 GHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIP-RIIFINKMDRERA--DFDKTLAA  139 (268)
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECCccCCC--CHHHHHHH
Confidence            58899999999654  3456788899999999998876666666777777666554 5579999997642  12234567


Q ss_pred             HHHHhCCcee-EEecCCh
Q 047623          244 IQEMLGLALL-GVIPEDS  260 (340)
Q Consensus       244 i~~~~g~~v~-~~Ip~d~  260 (340)
                      +++.++.+++ ..+|...
T Consensus       140 l~~~~~~~~~~~~ip~~~  157 (268)
T cd04170         140 LQEAFGRPVVPLQLPIGE  157 (268)
T ss_pred             HHHHhCCCeEEEEecccC
Confidence            7788887766 5677544

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>PRK03846 adenylylsulfate kinase; Provisional

Probab=96.69  E-value=0.0037  Score=53.55  Aligned_cols=42  Identities=31%  Similarity=0.389  Sum_probs=36.1

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      ..+.+|.++ +..|+||||++..|+..+...|..+.++|.|..
T Consensus        22 ~~~~~i~i~-G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~   63 (198)
T PRK03846         22 HKGVVLWFT-GLSGSGKSTVAGALEEALHELGVSTYLLDGDNV   63 (198)
T ss_pred             CCCEEEEEE-CCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeH
Confidence            455778877 567999999999999999988999999998864

>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []

Probab=96.68  E-value=0.067  Score=49.17  Aligned_cols=42  Identities=26%  Similarity=0.197  Sum_probs=35.0

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      +.++++-+.|. .++||||++.++...+.+.|..+++||....
T Consensus        51 p~G~ivEi~G~-~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~   92 (322)
T PF00154_consen   51 PRGRIVEIYGP-ESSGKTTLALHAIAEAQKQGGICAFIDAEHA   92 (322)
T ss_dssp             ETTSEEEEEES-TTSSHHHHHHHHHHHHHHTT-EEEEEESSS-
T ss_pred             ccCceEEEeCC-CCCchhhhHHHHHHhhhcccceeEEecCccc
Confidence            55789999976 4789999999999998888999999999754

In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....

>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]

Probab=96.67  E-value=0.049  Score=49.05  Aligned_cols=42  Identities=24%  Similarity=0.248  Sum_probs=34.8

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      +.+.|+=|+ +-.|+||||+|.+++......|.++++||..-.
T Consensus        58 ~~g~ItEiy-G~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~   99 (279)
T COG0468          58 PRGRITEIY-GPESSGKTTLALQLVANAQKPGGKAAFIDTEHA   99 (279)
T ss_pred             ccceEEEEe-cCCCcchhhHHHHHHHHhhcCCCeEEEEeCCCC
Confidence            445566666 677889999999999999999999999998743

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=96.66  E-value=0.014  Score=51.14  Aligned_cols=42  Identities=24%  Similarity=0.264  Sum_probs=34.8

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      +.+.++.+. +..|+|||+++.+++...++.|.+|++++++..
T Consensus        18 ~~G~~~~i~-G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~   59 (229)
T TIGR03881        18 PRGFFVAVT-GEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEES   59 (229)
T ss_pred             cCCeEEEEE-CCCCCChHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence            345566666 688999999999999888888999999998755

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=96.65  E-value=0.0097  Score=51.74  Aligned_cols=32  Identities=28%  Similarity=0.398  Sum_probs=25.3

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      +.+.|. ++.|+||||+|.+|+       .++++++.|..
T Consensus        13 ~~~liy-G~~G~GKtt~a~~~~-------~~~~~~~~d~~   44 (220)
T TIGR01618        13 NMYLIY-GKPGTGKTSTIKYLP-------GKTLVLSFDMS   44 (220)
T ss_pred             cEEEEE-CCCCCCHHHHHHhcC-------CCCEEEecccc
Confidence            345555 899999999998874       37999999964

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>PRK12739 elongation factor G; Reviewed

Probab=96.63  E-value=0.024  Score=58.07  Aligned_cols=89  Identities=18%  Similarity=0.161  Sum_probs=60.6

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHH
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLD  243 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~  243 (340)
                      ++.++++|||+..  ...+..++..+|.+++|++....--.....+++.+...+.+. .+++|+.+....  ......++
T Consensus        72 ~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~-iv~iNK~D~~~~--~~~~~~~~  148 (691)
T PRK12739         72 GHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPR-IVFVNKMDRIGA--DFFRSVEQ  148 (691)
T ss_pred             CEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCE-EEEEECCCCCCC--CHHHHHHH
Confidence            5889999999854  234466778899999999986554455567777777777665 599999997531  12234567


Q ss_pred             HHHHhCCcee-EEec
Q 047623          244 IQEMLGLALL-GVIP  257 (340)
Q Consensus       244 i~~~~g~~v~-~~Ip  257 (340)
                      +.+.++.... ..+|
T Consensus       149 i~~~l~~~~~~~~iP  163 (691)
T PRK12739        149 IKDRLGANAVPIQLP  163 (691)
T ss_pred             HHHHhCCCceeEEec
Confidence            7777775432 3444

>PRK00093 GTP-binding protein Der; Reviewed

Probab=96.62  E-value=0.022  Score=55.06  Aligned_cols=65  Identities=22%  Similarity=0.240  Sum_probs=42.2

Q ss_pred             CCCEEEEcCCCCCC-H---------HHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGID-A---------GFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~-~---------~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      .+++.|+|||+... .         ....++..+|.++++++....-...-..+.+.++..+ ..+.+|+|+++..
T Consensus        48 ~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~-~piilv~NK~D~~  122 (435)
T PRK00093         48 GREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSN-KPVILVVNKVDGP  122 (435)
T ss_pred             CcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcC-CcEEEEEECccCc
Confidence            36789999998543 1         1234567899999999886532222234555565544 4577999999853

>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=96.62  E-value=0.016  Score=49.47  Aligned_cols=108  Identities=17%  Similarity=0.274  Sum_probs=63.8

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccc
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKR  127 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  127 (340)
                      +.+..+.+- +.-|+|||.++..+++-+-..|++|.++-....   ...+....+.-++++.+.+              -
T Consensus        26 P~GsL~lIE-Gd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T---~refi~qm~sl~ydv~~~~--------------l   87 (235)
T COG2874          26 PVGSLILIE-GDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELT---VREFIKQMESLSYDVSDFL--------------L   87 (235)
T ss_pred             ccCeEEEEE-CCCCccHHHHHHHHHHHHHhCCceEEEEEechh---HHHHHHHHHhcCCCchHHH--------------h
Confidence            445566665 666899999999999999999999999976532   2222211111123332222              1


Q ss_pred             cCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCC
Q 047623          128 WSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPA  176 (340)
Q Consensus       128 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~  176 (340)
                      +..+.++|.+..............+..+++..+.   .+.|+||||+=.
T Consensus        88 ~G~l~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~---~~~dViIIDSls  133 (235)
T COG2874          88 SGRLLFFPVNLEPVNWGRRSARKLLDLLLEFIKR---WEKDVIIIDSLS  133 (235)
T ss_pred             cceeEEEEecccccccChHHHHHHHHHHHhhHHh---hcCCEEEEeccc
Confidence            2556666654333222222223334455555553   479999999965

>TIGR00436 era GTP-binding protein Era

Probab=96.62  E-value=0.022  Score=51.26  Aligned_cols=64  Identities=19%  Similarity=0.182  Sum_probs=41.6

Q ss_pred             CCCEEEEcCCCCCCH----------HHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGIDA----------GFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~~----------~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      .+.++++|||+....          .....+..+|.++++++.+...... ..+.+.+...+ ..+.+|+|+.+..
T Consensus        47 ~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~-~p~ilV~NK~Dl~  120 (270)
T TIGR00436        47 ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLK-RPVVLTRNKLDNK  120 (270)
T ss_pred             CcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcC-CCEEEEEECeeCC
Confidence            356899999984321          1234567899999999886543332 44555555544 3467999999863

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>CHL00071 tufA elongation factor Tu

Probab=96.59  E-value=0.025  Score=54.25  Aligned_cols=66  Identities=20%  Similarity=0.333  Sum_probs=50.2

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      ++.++++|+|+...  ..+...+..+|.++++++.+..-.....+.+..+...+.+.+.+++|+.+.-
T Consensus        74 ~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~  141 (409)
T CHL00071         74 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQV  141 (409)
T ss_pred             CeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCC
Confidence            46789999999432  2234566789999999988765556677778888877877788899999864

>PRK06696 uridine kinase; Validated

Probab=96.58  E-value=0.0048  Score=53.93  Aligned_cols=43  Identities=26%  Similarity=0.259  Sum_probs=35.4

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGL   91 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~   91 (340)
                      +...+|+|. +.+|+||||+|..|+..|...|.+|+.+.+|-..
T Consensus        20 ~~~~iI~I~-G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~   62 (223)
T PRK06696         20 TRPLRVAID-GITASGKTTFADELAEEIKKRGRPVIRASIDDFH   62 (223)
T ss_pred             CCceEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence            344566666 7889999999999999999889999998887653

>cd04171 SelB SelB subfamily

Probab=96.57  E-value=0.013  Score=47.85  Aligned_cols=65  Identities=17%  Similarity=0.187  Sum_probs=41.5

Q ss_pred             CCEEEEcCCCCCCH--HHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          167 PDFILIDCPAGIDA--GFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~~~--~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      +.+.++|+|+....  .....+..+|.++++++.+..-.......+..++..+...+.+++|+.+-.
T Consensus        51 ~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~  117 (164)
T cd04171          51 KRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLV  117 (164)
T ss_pred             cEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECcccc
Confidence            57789999985422  223345679999999988642223333333444444555688999999753

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins

Probab=96.56  E-value=0.04  Score=50.00  Aligned_cols=164  Identities=16%  Similarity=0.220  Sum_probs=88.6

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccc
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKR  127 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  127 (340)
                      -.+++|++.|+-.-+||=|++..|...+.++|.++..+-...+ +    ++-...  +.          .++.       
T Consensus       110 ~~~~rv~~vGTDcavGK~tTal~L~~~l~~~G~~a~fvaTGQT-G----imia~~--Gv----------~iDa-------  165 (301)
T PF07755_consen  110 VKAKRVLTVGTDCAVGKMTTALELRRALRERGINAGFVATGQT-G----IMIAGY--GV----------PIDA-------  165 (301)
T ss_dssp             -SSEEEEEEESSSSSSHHHHHHHHHHHHHHTT--EEEEE-SHH-H----HHCHSE--C------------GGG-------
T ss_pred             CCCCEEEEEccCccccHHHHHHHHHHHHHHcCCCceEEecCCc-e----EEEecC--Ce----------eccc-------
Confidence            4679999999999999999999999999999999998866544 1    110000  00          0000       


Q ss_pred             cCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHH-----HHHHH--hcCCeEEEEeCCCh
Q 047623          128 WSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAG-----FITAI--TPANEAVLVTTPDI  200 (340)
Q Consensus       128 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~-----~~~~l--~~ad~viiv~~~~~  200 (340)
                                     ...++-......++-...+    +.|+|||..-+++...     +...|  ...|.+|+...|..
T Consensus       166 ---------------v~~DFvaGavE~~v~~~~~----~~d~ivVEGQgsL~hPay~gvsl~lL~Gs~Pd~lVL~H~p~r  226 (301)
T PF07755_consen  166 ---------------VPSDFVAGAVEALVPEAAE----EHDWIVVEGQGSLSHPAYSGVSLGLLHGSQPDALVLCHAPGR  226 (301)
T ss_dssp             ---------------SBGGGHHHHHHHHHHHHCC----C-SEEEEE--S-TTSTTTHHCHHHHHHHH--SEEEEEEETT-
T ss_pred             ---------------hhhhhHHHHHHHHHHhhCc----CCCEEEEeccccccCccccccchhhhccCCCCeEEEEecCCc
Confidence                           0111222333333333332    3599999999976432     34444  46899999999843


Q ss_pred             hhH--------HHHHHHHHHHHhcC-----CCceEEEEecccCCcccccccccHHHHHHHhCCceeEEe
Q 047623          201 TSL--------RDADRVTGLLECDG-----IRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVI  256 (340)
Q Consensus       201 ~s~--------~~~~~~~~~l~~~~-----~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~I  256 (340)
                      ..+        ..+.+.++.++...     .+.+++-+|-..-+.  .+.....+++++.+|+|+...+
T Consensus       227 ~~~~~~p~~~ip~l~~~I~l~e~la~~~~~~~VvgIslNt~~l~~--~e~~~~~~~~~~e~glPv~Dp~  293 (301)
T PF07755_consen  227 KHRDGFPHYPIPPLEEEIELIEALAGTKPPAKVVGISLNTSGLSE--EEAKAAIERIEEELGLPVTDPL  293 (301)
T ss_dssp             SC-TTSTTSC---HHHHHHHHHHCCCGC---EEEEEECC-TTS-H--HHHHHHHHHHHHHH-S-EE-HH
T ss_pred             ccccCCCcCCCCCHHHHHHHHHHhhccCCCccEEEEEEECCCCCH--HHHHHHHHHHHHHHCCCeeecc
Confidence            332        23344444444322     236788888766543  2233457788899999887544

The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.

>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain

Probab=96.56  E-value=0.065  Score=46.88  Aligned_cols=89  Identities=12%  Similarity=0.110  Sum_probs=58.5

Q ss_pred             CCCCEEEEcCCCCCCH----HHHHHHhc-------C-----CeEEEEeC--CChhhHHHHHHHHHHHHhcCCCceEEEEe
Q 047623          165 GSPDFILIDCPAGIDA----GFITAITP-------A-----NEAVLVTT--PDITSLRDADRVTGLLECDGIRDIKMVVN  226 (340)
Q Consensus       165 ~~~D~VIiD~~~~~~~----~~~~~l~~-------a-----d~viiv~~--~~~~s~~~~~~~~~~l~~~~~~~~~vviN  226 (340)
                      ..+|++|+..++..++    ++.+++++       -     +..++|.-  ....--.-++..++.+++.|+..-++|+|
T Consensus       131 ~~~dv~i~EiGGTvGDiEs~pf~EAirq~~~~~g~~n~~~ihvt~vp~~~~~gE~KTKPtQhSVeaLRs~GIqPDgIVcR  210 (255)
T cd03113         131 SGADVVIVEIGGTVGDIESLPFLEAIRQMKLELGRENVLFIHVTLVPYLKAAGELKTKPTQHSVKELRSIGIQPDILVCR  210 (255)
T ss_pred             CCCCEEEEEeCCccccccccHHHHHHHHHHHHhCcCcEEEEEEeeeeeecCCCccccCchHHHHHHHHhCCCCCCEEEEe
Confidence            4799999999996533    33444421       1     22233322  24445566788899999999999999999


Q ss_pred             cccCCcccccccccHHHHHHHhCCceeEEecC
Q 047623          227 RVRTDMIKGEDMMSVLDIQEMLGLALLGVIPE  258 (340)
Q Consensus       227 ~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~  258 (340)
                      .-.+-     .....+.++...+++..+.++.
T Consensus       211 se~pL-----~e~~keKIAlFcnVpve~VI~~  237 (255)
T cd03113         211 SEKPL-----PPEIREKIALFCDVPPEAVISA  237 (255)
T ss_pred             CCCCC-----chHHHHHHHHhcCCCHHHeeec
Confidence            82221     2234567788888888777664

The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.

>PRK15494 era GTPase Era; Provisional

Probab=96.56  E-value=0.019  Score=53.62  Aligned_cols=64  Identities=17%  Similarity=0.265  Sum_probs=39.4

Q ss_pred             CCCEEEEcCCCCCCH-------HH---HHHHhcCCeEEEEeCCChhhHHHH-HHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGIDA-------GF---ITAITPANEAVLVTTPDITSLRDA-DRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~~-------~~---~~~l~~ad~viiv~~~~~~s~~~~-~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      ++.++++|||+....       ..   ...+..||.++++++... ++... ..+++.+...+... .+|+|+++..
T Consensus        99 ~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~-s~~~~~~~il~~l~~~~~p~-IlViNKiDl~  173 (339)
T PRK15494         99 DTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLK-SFDDITHNILDKLRSLNIVP-IFLLNKIDIE  173 (339)
T ss_pred             CeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCC-CCCHHHHHHHHHHHhcCCCE-EEEEEhhcCc
Confidence            356799999985321       11   123568999999987643 22222 34556665555444 4789999863

>PRK00049 elongation factor Tu; Reviewed

Probab=96.56  E-value=0.021  Score=54.41  Aligned_cols=66  Identities=20%  Similarity=0.303  Sum_probs=49.2

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      ++.++++|||+...  ..+...+..+|.++++++....-.....++++.+...+.+.+.+++|+++.-
T Consensus        74 ~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~  141 (396)
T PRK00049         74 KRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMV  141 (396)
T ss_pred             CeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCc
Confidence            46789999999532  2234456789999999998765556667778888877777666789999864

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=96.55  E-value=0.013  Score=57.47  Aligned_cols=40  Identities=13%  Similarity=0.161  Sum_probs=35.3

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      ..+++.++..|+||||++.+++...+++|.+|+++-++..
T Consensus       263 gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs  302 (484)
T TIGR02655       263 DSIILATGATGTGKTLLVSKFLENACANKERAILFAYEES  302 (484)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCC
Confidence            3455566899999999999999999999999999999876

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PRK09354 recA recombinase A; Provisional

Probab=96.55  E-value=0.019  Score=53.28  Aligned_cols=42  Identities=26%  Similarity=0.235  Sum_probs=36.0

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      +.+.++-|.| ..|+||||++.+++...++.|.++++||+.-.
T Consensus        58 p~G~IteI~G-~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s   99 (349)
T PRK09354         58 PRGRIVEIYG-PESSGKTTLALHAIAEAQKAGGTAAFIDAEHA   99 (349)
T ss_pred             cCCeEEEEEC-CCCCCHHHHHHHHHHHHHHcCCcEEEECCccc
Confidence            4556777775 79999999999999999999999999999864

>PRK11823 DNA repair protein RadA; Provisional

Probab=96.53  E-value=0.011  Score=57.21  Aligned_cols=39  Identities=31%  Similarity=0.439  Sum_probs=33.7

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      .+...++..|+||||++..+|..++++|.+|+++++...
T Consensus        81 s~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees  119 (446)
T PRK11823         81 SVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEES  119 (446)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcccc
Confidence            355556899999999999999999988999999998754

>PRK00007 elongation factor G; Reviewed

Probab=96.52  E-value=0.035  Score=56.92  Aligned_cols=90  Identities=18%  Similarity=0.128  Sum_probs=62.7

Q ss_pred             CCCEEEEcCCCCCCH--HHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHH
Q 047623          166 SPDFILIDCPAGIDA--GFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLD  243 (340)
Q Consensus       166 ~~D~VIiD~~~~~~~--~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~  243 (340)
                      ++.+.+||||+..+.  ....++..+|.+++|++....--.....+++.+...+.+.+ +++|+++....  ......++
T Consensus        74 ~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~i-v~vNK~D~~~~--~~~~~~~~  150 (693)
T PRK00007         74 DHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRI-AFVNKMDRTGA--DFYRVVEQ  150 (693)
T ss_pred             CeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEE-EEEECCCCCCC--CHHHHHHH
Confidence            588999999996533  24557788999999998766555666778888887777654 99999997531  12234567


Q ss_pred             HHHHhCCcee-EEecC
Q 047623          244 IQEMLGLALL-GVIPE  258 (340)
Q Consensus       244 i~~~~g~~v~-~~Ip~  258 (340)
                      +.+.++.... ..||-
T Consensus       151 i~~~l~~~~~~~~ipi  166 (693)
T PRK00007        151 IKDRLGANPVPIQLPI  166 (693)
T ss_pred             HHHHhCCCeeeEEecC
Confidence            7777776432 34443

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=96.50  E-value=0.012  Score=55.57  Aligned_cols=39  Identities=28%  Similarity=0.456  Sum_probs=33.5

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      .+.+.++..|+||||++..+|..+++.|.+|++++....
T Consensus        83 slvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs  121 (372)
T cd01121          83 SVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEES  121 (372)
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcC
Confidence            355556899999999999999999999899999998743

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>PRK05973 replicative DNA helicase; Provisional

Probab=96.50  E-value=0.0047  Score=54.34  Aligned_cols=40  Identities=18%  Similarity=0.199  Sum_probs=35.6

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      ..+.+.++..|+|||+++.++|...++.|.+|+++.++..
T Consensus        64 Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes  103 (237)
T PRK05973         64 GDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYT  103 (237)
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCC
Confidence            3456666999999999999999999999999999999976

>PRK15453 phosphoribulokinase; Provisional

Probab=96.49  E-value=0.0057  Score=54.90  Aligned_cols=44  Identities=20%  Similarity=0.332  Sum_probs=37.6

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLR   92 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~   92 (340)
                      +...+|+|+ +..|+||||++..|+..|.+.+.++.+++.|....
T Consensus         3 ~k~piI~It-G~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~   46 (290)
T PRK15453          3 AKHPIIAVT-GSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR   46 (290)
T ss_pred             CCCcEEEEE-CCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence            445788887 67789999999999999988888999999997643

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=96.49  E-value=0.0067  Score=52.29  Aligned_cols=41  Identities=34%  Similarity=0.404  Sum_probs=35.4

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      +.+.++.++ +..|+|||+++.+++...++.|.+|++||++.
T Consensus        10 ~~g~i~~i~-G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~   50 (209)
T TIGR02237        10 ERGTITQIY-GPPGSGKTNICMILAVNAARQGKKVVYIDTEG   50 (209)
T ss_pred             CCCeEEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence            345666666 68999999999999999999999999999984

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=96.48  E-value=0.0034  Score=53.26  Aligned_cols=39  Identities=23%  Similarity=0.316  Sum_probs=32.8

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 047623           53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLR   92 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~   92 (340)
                      +.|. +-.|+||||.+.++-.+.-.-|.++-+|.+||..-
T Consensus         6 ~lV~-GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae   44 (273)
T KOG1534|consen    6 QLVM-GPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAE   44 (273)
T ss_pred             EEEE-ccCCCCcchHHHHHHHHHHhhCceeEEeecCHHHH
Confidence            3444 56688999999999999998999999999998733

>cd03112 CobW_like The function of this protein family is unkown

Probab=96.43  E-value=0.074  Score=43.75  Aligned_cols=34  Identities=24%  Similarity=0.316  Sum_probs=25.3

Q ss_pred             EEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           54 VITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        54 ~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      .+..+--|+||||+...+....  .|.++.++-.+.
T Consensus         3 ~~l~G~~GsGKTtl~~~l~~~~--~~~~~~~i~~~~   36 (158)
T cd03112           3 TVLTGFLGAGKTTLLNHILTEQ--HGRKIAVIENEF   36 (158)
T ss_pred             EEEEECCCCCHHHHHHHHHhcc--cCCcEEEEecCC
Confidence            3445777999999999887653  478888876664

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>PF13479 AAA_24: AAA domain

Probab=96.43  E-value=0.018  Score=49.94  Aligned_cols=30  Identities=37%  Similarity=0.500  Sum_probs=24.6

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      .++|. +..|+||||+|..+        -++++||+|..
T Consensus         5 ~~lIy-G~~G~GKTt~a~~~--------~k~l~id~E~g   34 (213)
T PF13479_consen    5 KILIY-GPPGSGKTTLAASL--------PKPLFIDTENG   34 (213)
T ss_pred             EEEEE-CCCCCCHHHHHHhC--------CCeEEEEeCCC
Confidence            44444 88999999999887        59999999965

>TIGR00416 sms DNA repair protein RadA

Probab=96.42  E-value=0.01  Score=57.47  Aligned_cols=40  Identities=23%  Similarity=0.410  Sum_probs=34.4

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      ..+.+.++..|+||||++.++|..+++.|.+|++++....
T Consensus        94 GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs  133 (454)
T TIGR00416        94 GSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEES  133 (454)
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCC
Confidence            3455666999999999999999999999889999998754

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>PRK07952 DNA replication protein DnaC; Validated

Probab=96.42  E-value=0.0047  Score=54.69  Aligned_cols=35  Identities=37%  Similarity=0.382  Sum_probs=31.0

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEec
Q 047623           53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDA   87 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~   87 (340)
                      -.+..+++|+|||+++..+|..+.+.|++|+++++
T Consensus       101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~  135 (244)
T PRK07952        101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITV  135 (244)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEH
Confidence            34566899999999999999999999999999954

>COG1160 Predicted GTPases [General function prediction only]

Probab=96.41  E-value=0.06  Score=51.09  Aligned_cols=65  Identities=22%  Similarity=0.276  Sum_probs=45.7

Q ss_pred             CCCEEEEcCCCCC--C--H-------HHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGI--D--A-------GFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~--~-------~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      .+.+.+|||++-.  +  .       .+..++..||.++.+++....-...=..+.+.++ ...+.+.+|+|+++..
T Consensus        50 ~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr-~~~kpviLvvNK~D~~  125 (444)
T COG1160          50 GREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILR-RSKKPVILVVNKIDNL  125 (444)
T ss_pred             CceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-hcCCCEEEEEEcccCc
Confidence            4778999999844  2  1       2345678899999999886533333345666666 3446788999999875

>PLN00043 elongation factor 1-alpha; Provisional

Probab=96.40  E-value=0.025  Score=54.80  Aligned_cols=66  Identities=20%  Similarity=0.232  Sum_probs=50.8

Q ss_pred             CCCEEEEcCCCCCCH--HHHHHHhcCCeEEEEeCCChhhH-------HHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGIDA--GFITAITPANEAVLVTTPDITSL-------RDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~~--~~~~~l~~ad~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      ++-+.|||+|+..+.  .+...+..+|.+++|+......+       ..+++....+...+.+.+.+++|+.+..
T Consensus        84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~  158 (447)
T PLN00043         84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAT  158 (447)
T ss_pred             CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCC
Confidence            578899999996433  34556788999999999876544       3666777777778888889999999853

>PRK12736 elongation factor Tu; Reviewed

Probab=96.39  E-value=0.026  Score=53.82  Aligned_cols=66  Identities=20%  Similarity=0.307  Sum_probs=48.8

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      ++.++++|+|+...  ..+...+..+|.+++|+..+..-.....+.+..+...+.+.+.+++|+.+.-
T Consensus        74 ~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~  141 (394)
T PRK12736         74 KRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLV  141 (394)
T ss_pred             CcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCc
Confidence            46789999999542  2224445678999999998765455666777777777877788899999863

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=96.39  E-value=0.011  Score=49.27  Aligned_cols=42  Identities=21%  Similarity=0.160  Sum_probs=35.8

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      .++++++|+ +..|+||||++..|...|..+|++|..|-.+..
T Consensus         4 ~~~~ii~iv-G~sgsGKTTLi~~li~~l~~~g~~vg~Ik~~~~   45 (173)
T PRK10751          4 TMIPLLAIA-AWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH   45 (173)
T ss_pred             CCceEEEEE-CCCCChHHHHHHHHHHHHhhcCCeEEEEEEcCC
Confidence            456777887 568999999999999999999999999987654

>PLN03126 Elongation factor Tu; Provisional

Probab=96.38  E-value=0.054  Score=52.82  Aligned_cols=66  Identities=18%  Similarity=0.318  Sum_probs=50.5

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      ++.+.+||+|+...  ..+...+..+|.+++|++....-.....+.+..+...+.+.+.+++|+.+.-
T Consensus       143 ~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~  210 (478)
T PLN03126        143 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQV  210 (478)
T ss_pred             CcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEeccccc
Confidence            46789999998543  2335566789999999987765556667777778878887788999999863

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=96.38  E-value=0.015  Score=50.65  Aligned_cols=42  Identities=31%  Similarity=0.319  Sum_probs=34.5

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCC------CcEEEEecCCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLG------FSVVAIDADVG   90 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g------~~VlliD~D~~   90 (340)
                      +.+.++.+. +..|+|||+++.++|...+..|      .+|++||.+..
T Consensus        17 ~~g~v~~I~-G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~   64 (226)
T cd01393          17 PTGRITEIF-GEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGA   64 (226)
T ss_pred             cCCcEEEEe-CCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCC
Confidence            445666666 6889999999999999988777      89999999754

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=96.37  E-value=0.0056  Score=51.61  Aligned_cols=38  Identities=34%  Similarity=0.343  Sum_probs=32.9

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCC
Q 047623           53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGL   91 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~   91 (340)
                      |+|. +..|+||||+|..|+..+...|.++.+|.+|-..
T Consensus         2 i~i~-G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~   39 (179)
T cd02028           2 VGIA-GPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYY   39 (179)
T ss_pred             EEEE-CCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcc
Confidence            5555 7889999999999999999999999999998643

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=96.37  E-value=0.031  Score=49.35  Aligned_cols=41  Identities=17%  Similarity=0.242  Sum_probs=34.8

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      .+.++.|. +..|+|||++|.++++..+++|.+|+++.++..
T Consensus        20 ~gs~~lI~-G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~   60 (237)
T TIGR03877        20 ERNVVLLS-GGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEH   60 (237)
T ss_pred             CCeEEEEE-cCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCC
Confidence            34555555 889999999999999988888999999999875

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>PRK05595 replicative DNA helicase; Provisional

Probab=96.36  E-value=0.0043  Score=60.08  Aligned_cols=40  Identities=25%  Similarity=0.324  Sum_probs=34.9

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEecCCC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLA-RLGFSVVAIDADVG   90 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la-~~g~~VlliD~D~~   90 (340)
                      .-+.+.++..|+|||+++.|+|..+| +.|++|+++.+...
T Consensus       201 g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms  241 (444)
T PRK05595        201 GDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMS  241 (444)
T ss_pred             CcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCC
Confidence            45667789999999999999999877 56999999999876

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=96.34  E-value=0.0061  Score=54.28  Aligned_cols=40  Identities=30%  Similarity=0.436  Sum_probs=35.0

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLR   92 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~   92 (340)
                      +|+|+ +..|+||||++..++..|.+.|.++.+|+.|.-+.
T Consensus         1 IIgIt-G~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr   40 (277)
T cd02029           1 VIAVT-GSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR   40 (277)
T ss_pred             CEEEE-CCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence            46776 67789999999999999999999999999997644

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PRK04328 hypothetical protein; Provisional

Probab=96.33  E-value=0.032  Score=49.62  Aligned_cols=42  Identities=19%  Similarity=0.234  Sum_probs=35.2

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      +.+.++.|. +..|+|||+++.++++..+++|.+++++.++..
T Consensus        21 p~gs~ili~-G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~   62 (249)
T PRK04328         21 PERNVVLLS-GGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEH   62 (249)
T ss_pred             cCCcEEEEE-cCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCC
Confidence            345566666 677799999999999998888999999999875

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=96.27  E-value=0.0069  Score=49.34  Aligned_cols=36  Identities=33%  Similarity=0.439  Sum_probs=32.4

Q ss_pred             EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           55 ITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        55 v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      +..++.|+||||++..++..++..|.+|++++++..
T Consensus         3 ~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~   38 (165)
T cd01120           3 LVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEE   38 (165)
T ss_pred             eEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcc
Confidence            345789999999999999999999999999999876

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=96.24  E-value=0.016  Score=48.66  Aligned_cols=36  Identities=33%  Similarity=0.358  Sum_probs=28.9

Q ss_pred             EEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           54 VITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        54 ~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      .+.++-=|+||||+-.+|.. ....|.++++|-.|..
T Consensus         3 ~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI~ne~g   38 (178)
T PF02492_consen    3 IIITGFLGSGKTTLINHLLK-RNRQGERVAVIVNEFG   38 (178)
T ss_dssp             EEEEESTTSSHHHHHHHHHH-HHTTTS-EEEEECSTT
T ss_pred             EEEEcCCCCCHHHHHHHHHH-HhcCCceeEEEEcccc
Confidence            44556779999999999998 6667999999988865

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>TIGR00485 EF-Tu translation elongation factor TU

Probab=96.24  E-value=0.05  Score=51.88  Aligned_cols=66  Identities=20%  Similarity=0.299  Sum_probs=47.9

Q ss_pred             CCCEEEEcCCCCCCH--HHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGIDA--GFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~~--~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      .+.+.++|+|+....  .+...+..+|.+++++..+..-.....+.+..+...+.+.+.+++|+.+..
T Consensus        74 ~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~  141 (394)
T TIGR00485        74 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMV  141 (394)
T ss_pred             CEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccC
Confidence            367889999986432  223345668999999988765455666777778777777777889999863

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C

Probab=96.19  E-value=0.0067  Score=51.48  Aligned_cols=38  Identities=26%  Similarity=0.303  Sum_probs=29.9

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHH----------CCCcEEEEecCCC
Q 047623           53 VVITSGKGGVGKTTTTANVGLSLAR----------LGFSVVAIDADVG   90 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~la~----------~g~~VlliD~D~~   90 (340)
                      ++++.+.+|+||||++.++|..++.          .+.+|++|+++..
T Consensus        34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~   81 (193)
T PF13481_consen   34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS   81 (193)
T ss_dssp             EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence            5666688999999999999999997          5789999999976

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=96.18  E-value=0.014  Score=51.20  Aligned_cols=42  Identities=26%  Similarity=0.253  Sum_probs=32.2

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC------CCcEEEEecCCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARL------GFSVVAIDADVG   90 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~------g~~VlliD~D~~   90 (340)
                      +.+.++.+. +..|+|||+++.+++......      +.+|++||++..
T Consensus        17 ~~g~i~~i~-G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~   64 (235)
T cd01123          17 ETGSITEIF-GEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGT   64 (235)
T ss_pred             CCCeEEEEE-CCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCC
Confidence            344555555 788999999999999775543      379999999864

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>PRK12735 elongation factor Tu; Reviewed

Probab=96.17  E-value=0.066  Score=51.08  Aligned_cols=66  Identities=20%  Similarity=0.307  Sum_probs=47.5

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      +..++++|||+...  ..+...+..+|.+++++.....-.....+.+..+...+.+.+.+++|+.+..
T Consensus        74 ~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~  141 (396)
T PRK12735         74 NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMV  141 (396)
T ss_pred             CcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCc
Confidence            35679999999532  2234456678999999988764455566777777777777777789999864

>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase

Probab=96.14  E-value=0.015  Score=53.31  Aligned_cols=43  Identities=26%  Similarity=0.338  Sum_probs=39.0

Q ss_pred             CCCEEEEEEcCC-CCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           48 ETPRVVVITSGK-GGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        48 ~~~~iI~v~s~k-GGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      ....+|+|.|-. ||+|||-++.-||..|.++|++|.++-=.+.
T Consensus        26 ~~vPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg   69 (311)
T TIGR00682        26 APVPVVIVGNLSVGGTGKTPVVVWLAELLKDRGLRVGVLSRGYG   69 (311)
T ss_pred             CCCCEEEEeccccCCcChHHHHHHHHHHHHHCCCEEEEECCCCC
Confidence            456899999988 9999999999999999999999999977665

Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.

>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated

Probab=96.10  E-value=0.045  Score=46.34  Aligned_cols=36  Identities=19%  Similarity=0.271  Sum_probs=30.1

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      .|.|. +..|.||||.|..+|...+..|.+|+++-+=
T Consensus        24 ~v~v~-~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFl   59 (191)
T PRK05986         24 LLIVH-TGNGKGKSTAAFGMALRAVGHGKKVGVVQFI   59 (191)
T ss_pred             eEEEE-CCCCCChHHHHHHHHHHHHHCCCeEEEEEEe
Confidence            33344 5668899999999999999999999998764

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=96.09  E-value=0.28  Score=42.25  Aligned_cols=42  Identities=24%  Similarity=0.183  Sum_probs=33.0

Q ss_pred             CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      .+..++|+|+ +--|+||||+..+++..+. .+.+|.++..|..
T Consensus        19 ~~~~~~i~~~-G~~gsGKTTli~~l~~~~~-~~~~v~v~~~~~~   60 (207)
T TIGR00073        19 KHGLVVLNFM-SSPGSGKTTLIEKLIDNLK-DEVKIAVIEGDVI   60 (207)
T ss_pred             hcCcEEEEEE-CCCCCCHHHHHHHHHHHHh-cCCeEEEEECCCC
Confidence            4456778777 5678999999999998765 3579999997764

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

Probab=96.08  E-value=0.045  Score=48.96  Aligned_cols=46  Identities=30%  Similarity=0.317  Sum_probs=39.0

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCc
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNL   94 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l   94 (340)
                      +.+.+++|. +..|+|||+++.+++...++.|.+|++|.++.....+
T Consensus        21 p~g~~~lI~-G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l   66 (260)
T COG0467          21 PRGSVVLIT-GPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEEL   66 (260)
T ss_pred             cCCcEEEEE-cCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHH
Confidence            455667766 8889999999999999999999999999999873343

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=96.05  E-value=0.0089  Score=48.75  Aligned_cols=36  Identities=28%  Similarity=0.321  Sum_probs=31.3

Q ss_pred             EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           55 ITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        55 v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      +..+..|+||||+|..|+..+.+.|.++.++|.|..
T Consensus         3 ~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~   38 (149)
T cd02027           3 WLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV   38 (149)
T ss_pred             EEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence            344889999999999999999998999999887754

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]

Probab=95.92  E-value=0.069  Score=49.06  Aligned_cols=47  Identities=19%  Similarity=0.190  Sum_probs=38.1

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCch
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLD   95 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~   95 (340)
                      ..++.+.+.| --.+||||++.-|-.+..+.|++.+.+|+|++.++..
T Consensus       101 ~~GPrv~vVG-p~d~GKsTl~r~L~nyavk~gr~Plfv~LDvgQ~sit  147 (415)
T KOG2749|consen  101 SYGPRVMVVG-PTDVGKSTLCRILLNYAVKQGRRPLFVELDVGQGSIT  147 (415)
T ss_pred             ccCCEEEEEC-CCccchHHHHHHHHHHHHHcCCcceEEEcCCCCCcee
Confidence            3456666663 3468999999999999999999999999999866543

>cd04168 TetM_like Tet(M)-like subfamily

Probab=95.91  E-value=0.045  Score=48.32  Aligned_cols=89  Identities=19%  Similarity=0.144  Sum_probs=62.9

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHH
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLD  243 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~  243 (340)
                      ++.+.++|||+...  ......+..+|.+++|+.....-......+.+.+...+.+ ..+++|+.+.....  ......+
T Consensus        63 ~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P-~iivvNK~D~~~a~--~~~~~~~  139 (237)
T cd04168          63 DTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIP-TIIFVNKIDRAGAD--LEKVYQE  139 (237)
T ss_pred             CEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCC-EEEEEECccccCCC--HHHHHHH
Confidence            57899999998653  3446678889999999987655445566677777766665 45899999865321  2234678


Q ss_pred             HHHHhCCcee-EEec
Q 047623          244 IQEMLGLALL-GVIP  257 (340)
Q Consensus       244 i~~~~g~~v~-~~Ip  257 (340)
                      +++.++.+++ ..+|
T Consensus       140 i~~~~~~~~~~~~~p  154 (237)
T cd04168         140 IKEKLSSDIVPMQKV  154 (237)
T ss_pred             HHHHHCCCeEEEECC
Confidence            8888987766 4466

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=95.91  E-value=0.026  Score=51.26  Aligned_cols=153  Identities=14%  Similarity=0.167  Sum_probs=84.9

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHH----CCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccc
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLAR----LGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDK  126 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~----~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  126 (340)
                      ++|.+. +-.|+|||+++-.||+.|+=    +-.+..+|+.+.+ .-.+.||+-..   .-+..++..-..+-+    + 
T Consensus       178 RliLlh-GPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh-sLFSKWFsESg---KlV~kmF~kI~ELv~----d-  247 (423)
T KOG0744|consen  178 RLILLH-GPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH-SLFSKWFSESG---KLVAKMFQKIQELVE----D-  247 (423)
T ss_pred             eEEEEe-CCCCCChhHHHHHHHHhheeeecCccccceEEEEehh-HHHHHHHhhhh---hHHHHHHHHHHHHHh----C-
Confidence            556666 67899999999999999983    3567889999887 67788886543   222222221111100    0 


Q ss_pred             ccCceeEeecC--------CCCCCCCCCcchhh---HHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEE
Q 047623          127 RWSNFELLCIS--------KPRSKLPLGFGGKA---LTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLV  195 (340)
Q Consensus       127 ~~~~l~~l~~~--------~~~~~~~~~~~~~~---~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv  195 (340)
                       ..++-++..+        ..... ......+.   +..++.++.+ ++....++|.-|++-.+....+....||.+..|
T Consensus       248 -~~~lVfvLIDEVESLa~aR~s~~-S~~EpsDaIRvVNalLTQlDr-lK~~~NvliL~TSNl~~siD~AfVDRADi~~yV  324 (423)
T KOG0744|consen  248 -RGNLVFVLIDEVESLAAARTSAS-SRNEPSDAIRVVNALLTQLDR-LKRYPNVLILATSNLTDSIDVAFVDRADIVFYV  324 (423)
T ss_pred             -CCcEEEEEeHHHHHHHHHHHhhh-cCCCCchHHHHHHHHHHHHHH-hccCCCEEEEeccchHHHHHHHhhhHhhheeec
Confidence             0222222111        10000 00011122   2233333333 344556666666665566667778899999999


Q ss_pred             eCCChhhHHHHH-HHHHHHHhc
Q 047623          196 TTPDITSLRDAD-RVTGLLECD  216 (340)
Q Consensus       196 ~~~~~~s~~~~~-~~~~~l~~~  216 (340)
                      -.|+...+.... ..++.+-..
T Consensus       325 G~Pt~~ai~~IlkscieEL~~~  346 (423)
T KOG0744|consen  325 GPPTAEAIYEILKSCIEELISS  346 (423)
T ss_pred             CCccHHHHHHHHHHHHHHHHhc
Confidence            988777765543 344444443

>cd00880 Era_like Era (E

Probab=95.90  E-value=0.069  Score=42.64  Aligned_cols=66  Identities=18%  Similarity=0.262  Sum_probs=43.6

Q ss_pred             CCCEEEEcCCCCCC---------HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCc
Q 047623          166 SPDFILIDCPAGID---------AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDM  232 (340)
Q Consensus       166 ~~D~VIiD~~~~~~---------~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~  232 (340)
                      .++++++|+|+...         ......+..+|.+++++....................+ ..+.+++|+.+...
T Consensus        44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~-~~~ivv~nK~D~~~  118 (163)
T cd00880          44 LGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEKLLELLRERG-KPVLLVLNKIDLLP  118 (163)
T ss_pred             CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcC-CeEEEEEEccccCC
Confidence            48999999998432         23344667899999999887665444444333333333 34679999988643

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=95.89  E-value=0.014  Score=52.29  Aligned_cols=40  Identities=18%  Similarity=0.249  Sum_probs=34.1

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      ..+....+..|+|||+++.++|...+++|.+|++++++..
T Consensus        36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~   75 (259)
T TIGR03878        36 YSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESP   75 (259)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCC
Confidence            3445555899999999999999999999999999999843

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=95.87  E-value=0.015  Score=49.30  Aligned_cols=65  Identities=25%  Similarity=0.302  Sum_probs=53.1

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      .+.+.+||||+...  ..+..++..+|.+++++++...-.....+.++.+...+.+ +.+++|+++.-
T Consensus        69 ~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p-~ivvlNK~D~~  135 (188)
T PF00009_consen   69 NRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIP-IIVVLNKMDLI  135 (188)
T ss_dssp             SEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-S-EEEEEETCTSS
T ss_pred             ccceeecccccccceeecccceecccccceeeeecccccccccccccccccccccc-eEEeeeeccch
Confidence            68899999999653  2345567889999999999877667788888999888888 88999999875

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=95.87  E-value=0.013  Score=52.70  Aligned_cols=39  Identities=31%  Similarity=0.361  Sum_probs=34.2

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEecCCC
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARL-GFSVVAIDADVG   90 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~-g~~VlliD~D~~   90 (340)
                      -+.+.++..|+|||+++.++|..++.. |.+|+++.++..
T Consensus        31 ~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~   70 (271)
T cd01122          31 ELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEP   70 (271)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccC
Confidence            355666999999999999999999877 999999999865

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>PRK10218 GTP-binding protein; Provisional

Probab=95.86  E-value=0.15  Score=51.31  Aligned_cols=65  Identities=15%  Similarity=0.178  Sum_probs=49.1

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      ++.+.|+|||+..  .......+..+|.+++|++....-..........+...+.+. .+++|+.+..
T Consensus        67 ~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~-IVviNKiD~~  133 (607)
T PRK10218         67 DYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKP-IVVINKVDRP  133 (607)
T ss_pred             CEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCE-EEEEECcCCC
Confidence            5888999999864  334566788999999999887655556666666666666664 6899999864

>PRK06762 hypothetical protein; Provisional

Probab=95.85  E-value=0.014  Score=48.29  Aligned_cols=37  Identities=30%  Similarity=0.517  Sum_probs=28.0

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      |+++|.++ +..|+||||+|..|+..+   |..+.+++.|.
T Consensus         1 m~~li~i~-G~~GsGKST~A~~L~~~l---~~~~~~i~~D~   37 (166)
T PRK06762          1 MTTLIIIR-GNSGSGKTTIAKQLQERL---GRGTLLVSQDV   37 (166)
T ss_pred             CCeEEEEE-CCCCCCHHHHHHHHHHHh---CCCeEEecHHH
Confidence            44566665 889999999999999887   44677777653

>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed

Probab=95.83  E-value=0.021  Score=52.69  Aligned_cols=42  Identities=24%  Similarity=0.331  Sum_probs=37.0

Q ss_pred             CCEEEEEEcC-CCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           49 TPRVVVITSG-KGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~-kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      ...+|+|.|- -||+|||+++..||..|.++|++|.+|-=+..
T Consensus        48 ~~pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRGYg   90 (325)
T PRK00652         48 PVPVIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSRGYG   90 (325)
T ss_pred             CCCEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECCCCC
Confidence            4569999776 59999999999999999999999999977765

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=95.82  E-value=0.053  Score=53.51  Aligned_cols=42  Identities=17%  Similarity=0.162  Sum_probs=35.4

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEecCCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARL-GFSVVAIDADVG   90 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~-g~~VlliD~D~~   90 (340)
                      +.+.++.+. +..|+|||+++.+++...+++ |.+|++|.++..
T Consensus        29 p~Gs~~li~-G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~   71 (509)
T PRK09302         29 PKGRPTLVS-GTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEES   71 (509)
T ss_pred             CCCcEEEEE-eCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCC
Confidence            345566666 788999999999999888877 999999999976

>PRK05480 uridine/cytidine kinase; Provisional

Probab=95.82  E-value=0.024  Score=48.94  Aligned_cols=40  Identities=30%  Similarity=0.361  Sum_probs=32.3

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      ....+|++. +..|+||||++..|+..+  .+..+.+++.|..
T Consensus         4 ~~~~iI~I~-G~sGsGKTTl~~~l~~~l--~~~~~~~i~~D~~   43 (209)
T PRK05480          4 KKPIIIGIA-GGSGSGKTTVASTIYEEL--GDESIAVIPQDSY   43 (209)
T ss_pred             CCCEEEEEE-CCCCCCHHHHHHHHHHHh--CCCceEEEeCCcc
Confidence            345677777 688999999999999988  4568889999864

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=95.78  E-value=0.012  Score=52.39  Aligned_cols=35  Identities=29%  Similarity=0.496  Sum_probs=31.0

Q ss_pred             EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           55 ITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        55 v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      +..|-.|+||||+|..||..+...|.+|.++|.|.
T Consensus         3 vl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~   37 (249)
T TIGR03574         3 ILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDL   37 (249)
T ss_pred             EEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHH
Confidence            45588999999999999999999999999998774

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork

Probab=95.78  E-value=0.016  Score=51.78  Aligned_cols=40  Identities=23%  Similarity=0.414  Sum_probs=34.5

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEecCCC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARL-GFSVVAIDADVG   90 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~-g~~VlliD~D~~   90 (340)
                      .-+.+.++..|+|||+++.++|..++.. |.+|+++.++..
T Consensus        19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~   59 (259)
T PF03796_consen   19 GELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMS   59 (259)
T ss_dssp             T-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-
T ss_pred             CcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCC
Confidence            3467777999999999999999999987 699999999976

Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....

>cd00984 DnaB_C DnaB helicase C terminal domain

Probab=95.78  E-value=0.017  Score=50.96  Aligned_cols=39  Identities=21%  Similarity=0.370  Sum_probs=34.4

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEecCCC
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARL-GFSVVAIDADVG   90 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~-g~~VlliD~D~~   90 (340)
                      -+.+.++..|+|||+++.+++..++.. |.+|+++.++..
T Consensus        14 ~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~   53 (242)
T cd00984          14 DLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMS   53 (242)
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCC
Confidence            455556889999999999999999987 999999999976

The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=95.71  E-value=0.23  Score=41.32  Aligned_cols=66  Identities=12%  Similarity=-0.016  Sum_probs=41.3

Q ss_pred             CCCEEEEcCCCCCCH--HHHHHHhcCCeEEEEeCC-ChhhHHHHHHHHHHHHhc-C--CCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGIDA--GFITAITPANEAVLVTTP-DITSLRDADRVTGLLECD-G--IRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~~--~~~~~l~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~-~--~~~~~vviN~~~~~  231 (340)
                      .|++.++|+|+....  .....+..+|.++++... +..+...+..+.+.+.+. .  ...+.++.|+.+..
T Consensus        48 ~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~  119 (180)
T cd04137          48 DYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLH  119 (180)
T ss_pred             EEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhh
Confidence            478899999885422  223445668877777654 445666666655555432 1  13577999998854

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=95.70  E-value=0.013  Score=54.38  Aligned_cols=38  Identities=24%  Similarity=0.350  Sum_probs=33.5

Q ss_pred             EEEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEecCCCC
Q 047623           54 VITSGKGGVGKTTTTANVGLSLA-RLGFSVVAIDADVGL   91 (340)
Q Consensus        54 ~v~s~kGGvGKTt~a~~LA~~la-~~g~~VlliD~D~~~   91 (340)
                      +|..+-.|+||||++..|+.+|. +.|++|.++|.|-.-
T Consensus         2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i   40 (340)
T TIGR03575         2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDII   40 (340)
T ss_pred             eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccc
Confidence            56668889999999999999998 579999999999754

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>TIGR00101 ureG urease accessory protein UreG

Probab=95.70  E-value=0.59  Score=40.04  Aligned_cols=37  Identities=22%  Similarity=0.344  Sum_probs=28.5

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      .|+++ +..|+||||+...+...+... .++.++..|..
T Consensus         3 ~i~i~-G~~GsGKTTll~~l~~~l~~~-~~~~~~~~d~~   39 (199)
T TIGR00101         3 KIGVA-GPVGSGKTALIEALTRALRQK-YQLAVITNDIY   39 (199)
T ss_pred             EEEEE-CCCCCCHHHHHHHHHHhhCcC-CcEEEEeCCcC
Confidence            45666 778899999999999887754 46888877765

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=95.69  E-value=0.027  Score=47.56  Aligned_cols=42  Identities=29%  Similarity=0.408  Sum_probs=34.4

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      .++.+|.+. +..|+||||++..|+..+...|..+.++|.|.-
T Consensus        16 ~~~~~i~i~-G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~   57 (184)
T TIGR00455        16 HRGVVIWLT-GLSGSGKSTIANALEKKLESKGYRVYVLDGDNV   57 (184)
T ss_pred             CCCeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEECChHH
Confidence            455666666 667999999999999999888888899987753

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>PRK05433 GTP-binding protein LepA; Provisional

Probab=95.67  E-value=0.1  Score=52.44  Aligned_cols=65  Identities=18%  Similarity=0.161  Sum_probs=43.2

Q ss_pred             CCCEEEEcCCCCCCH--HHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGIDA--GFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~~--~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      .|.+.++|||+..+.  .....+..||.++++++.....-.........+...+.+ +.+|+|+.+..
T Consensus        73 ~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lp-iIvViNKiDl~  139 (600)
T PRK05433         73 TYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLE-IIPVLNKIDLP  139 (600)
T ss_pred             cEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCC-EEEEEECCCCC
Confidence            478899999996543  345678889999999988643222222233333334544 77999999864

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=95.65  E-value=0.071  Score=51.32  Aligned_cols=64  Identities=20%  Similarity=0.271  Sum_probs=42.5

Q ss_pred             CCEEEEcCCCCCC----------HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          167 PDFILIDCPAGID----------AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~~----------~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      ..+.|+|||+...          .....++..||.++++++....-......+.+.+++.+ ..+.+|+|+++..
T Consensus        47 ~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~-~piilVvNK~D~~  120 (429)
T TIGR03594        47 REFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSG-KPVILVANKIDGK  120 (429)
T ss_pred             eEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhC-CCEEEEEECccCC
Confidence            4578999988421          12344567899999999886533333345666666544 3577899999864

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>COG3367 Uncharacterized conserved protein [Function unknown]

Probab=95.64  E-value=0.27  Score=44.69  Aligned_cols=171  Identities=16%  Similarity=0.199  Sum_probs=103.6

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccc
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKR  127 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  127 (340)
                      ...+++++.|+.--+||=|+|..|...+...|+++..+-.+.. +-+-  .+                            
T Consensus       146 ~~a~~V~vvGTd~~vGKrTTa~~L~~~~~e~G~~a~fvaTgqt-gil~--~~----------------------------  194 (339)
T COG3367         146 VDAKVVLVVGTDCAVGKRTTALELREAAREEGIKAGFVATGQT-GILI--AD----------------------------  194 (339)
T ss_pred             cCCcEEEEeccccccchhHHHHHHHHHHHHhCCccceEecCce-eeEE--ec----------------------------
Confidence            3468999999999999999999999999999999988877654 1111  00                            


Q ss_pred             cCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHH----HHHHH--hcCCeEEEEeCCChh
Q 047623          128 WSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAG----FITAI--TPANEAVLVTTPDIT  201 (340)
Q Consensus       128 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~----~~~~l--~~ad~viiv~~~~~~  201 (340)
                       .++- +.      ....++-...+..+.-.+.+   +++|+|+|...+++..+    ....+  .+.|.++++-.|+..
T Consensus       195 -~gvv-vd------av~~DfaAGave~~v~~~~e---~~~Dii~VEGQgsl~HP~y~vtl~il~gs~PDavvL~H~P~r~  263 (339)
T COG3367         195 -DGVV-VD------AVVMDFAAGAVESAVYEAEE---KNPDIIFVEGQGSLTHPAYGVTLGILHGSAPDAVVLCHDPNRK  263 (339)
T ss_pred             -CceE-ec------chhHHHHHHHHHHHHHHhhh---cCCCEEEEeccccccCCCcccchhhhcCCCCCeEEEEecCCCc
Confidence             0000 00      00001112222222222222   37999999999877433    24444  468999999998766


Q ss_pred             hHHH-------HHHHHHHHHhc-CCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHH
Q 047623          202 SLRD-------ADRVTGLLECD-GIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEV  262 (340)
Q Consensus       202 s~~~-------~~~~~~~l~~~-~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~  262 (340)
                      ...+       ...+++.+... +.+.+++.+|--+-++.  ..-.-..++...+|+|+...+.+..++
T Consensus       264 ~~~g~P~~ip~leevi~l~e~l~~a~Vvgi~lNtr~~dE~--~are~~a~l~~efglP~~Dp~~~~~d~  330 (339)
T COG3367         264 YRDGFPEPIPPLEEVIALYELLSNAKVVGIALNTRNLDEE--EARELCAKLEAEFGLPVTDPLRFGEDV  330 (339)
T ss_pred             cccCCCCcCCCHHHHHHHHHHccCCcEEEEEecccccChH--HHHHHHHHHhhccCCccccccccchHH
Confidence            5542       23333333322 36778888886443331  111224467777888888777766554

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=95.64  E-value=0.015  Score=45.21  Aligned_cols=28  Identities=39%  Similarity=0.725  Sum_probs=21.4

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEE
Q 047623           53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVA   84 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~Vll   84 (340)
                      |.| .+..|+||||+|..||..+   |..++-
T Consensus         2 I~I-~G~~gsGKST~a~~La~~~---~~~~i~   29 (121)
T PF13207_consen    2 III-SGPPGSGKSTLAKELAERL---GFPVIS   29 (121)
T ss_dssp             EEE-EESTTSSHHHHHHHHHHHH---TCEEEE
T ss_pred             EEE-ECCCCCCHHHHHHHHHHHH---CCeEEE
Confidence            444 4788999999999999877   656543

...

>PF13245 AAA_19: Part of AAA domain

Probab=95.59  E-value=0.027  Score=40.21  Aligned_cols=36  Identities=31%  Similarity=0.362  Sum_probs=28.8

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHC----CCcEEEEecC
Q 047623           53 VVITSGKGGVGKTTTTANVGLSLARL----GFSVVAIDAD   88 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~la~~----g~~VlliD~D   88 (340)
                      +++..+-.|+|||+++++++..+...    +.+|+++-..
T Consensus        12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t   51 (76)
T PF13245_consen   12 LFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT   51 (76)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence            45555888999999999999888865    8899998544

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=95.58  E-value=0.071  Score=52.64  Aligned_cols=41  Identities=17%  Similarity=0.310  Sum_probs=35.1

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      .+.++.|. +..|+|||+++.+++...++.|.+|+++.++..
T Consensus       272 ~g~~~li~-G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~  312 (509)
T PRK09302        272 RGSIILVS-GATGTGKTLLASKFAEAACRRGERCLLFAFEES  312 (509)
T ss_pred             CCcEEEEE-cCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCC
Confidence            34566665 688999999999999999999999999999865

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=95.55  E-value=0.019  Score=49.03  Aligned_cols=38  Identities=26%  Similarity=0.376  Sum_probs=30.7

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCc----EEEEecCCC
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARLGFS----VVAIDADVG   90 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~----VlliD~D~~   90 (340)
                      +|+|. +-+|+||||+|..|+..|.+.|.+    +..+..|..
T Consensus         1 IIgI~-G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~   42 (194)
T PF00485_consen    1 IIGIA-GPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDF   42 (194)
T ss_dssp             EEEEE-ESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGG
T ss_pred             CEEEE-CCCCCCHHHHHHHHHHHhCccCcCccceeEEEeeccc
Confidence            46666 677899999999999999998877    667766643

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]

Probab=95.51  E-value=0.037  Score=44.60  Aligned_cols=55  Identities=27%  Similarity=0.328  Sum_probs=43.9

Q ss_pred             CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcC
Q 047623           47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLEN  102 (340)
Q Consensus        47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~  102 (340)
                      .+.+-+|=++ +-.|+||||+|..|..+|-++|+-+-.+|.|.-.-++..-++.+.
T Consensus        28 ~qkGcviWiT-GLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~DL~F~a   82 (207)
T KOG0635|consen   28 KQKGCVIWIT-GLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLGFKA   82 (207)
T ss_pred             cCCCcEEEEe-ccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccccccCcch
Confidence            4555677777 556889999999999999999999999999986566666555543

>PRK05439 pantothenate kinase; Provisional

Probab=95.50  E-value=0.034  Score=50.92  Aligned_cols=43  Identities=28%  Similarity=0.268  Sum_probs=35.4

Q ss_pred             CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC--CCcEEEEecCCC
Q 047623           47 GETPRVVVITSGKGGVGKTTTTANVGLSLARL--GFSVVAIDADVG   90 (340)
Q Consensus        47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~--g~~VlliD~D~~   90 (340)
                      .+...+|+|+ +..|+||||+|..|+..+.+.  |.+|.+|.+|-.
T Consensus        83 ~~~~~iIgIa-G~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdF  127 (311)
T PRK05439         83 QKVPFIIGIA-GSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGF  127 (311)
T ss_pred             CCCCEEEEEE-CCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccc
Confidence            3455677777 778999999999999999864  789999999964

>PRK03003 GTP-binding protein Der; Reviewed

Probab=95.50  E-value=0.072  Score=52.05  Aligned_cols=64  Identities=16%  Similarity=0.273  Sum_probs=41.7

Q ss_pred             CCEEEEcCCCCCC----------HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          167 PDFILIDCPAGID----------AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~~----------~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      ..+.++|+|+...          .....++..||.+++|++.+......-..+.+.++..+ ..+.+|+|+++..
T Consensus        86 ~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~-~piilV~NK~Dl~  159 (472)
T PRK03003         86 RRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSG-KPVILAANKVDDE  159 (472)
T ss_pred             cEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcC-CCEEEEEECccCC
Confidence            5678899988431          11234567899999999986532222344556665433 4577999999864

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=95.49  E-value=0.065  Score=53.98  Aligned_cols=65  Identities=14%  Similarity=0.208  Sum_probs=48.8

Q ss_pred             CCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          167 PDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      .-+.+||+|+...  ..+...+..+|.+++|+..+..-.....+.++.+...+.+.+.+|+|+++..
T Consensus        51 ~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv  117 (614)
T PRK10512         51 RVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRV  117 (614)
T ss_pred             cEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccC
Confidence            4467999998532  2234456789999999998876666777777777777777778999999863

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=95.47  E-value=0.021  Score=48.05  Aligned_cols=39  Identities=26%  Similarity=0.376  Sum_probs=29.8

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      .++-+.+.| ..|+|||.+|..+|..+.++|++|+.+++.
T Consensus        46 ~~~~l~l~G-~~G~GKThLa~ai~~~~~~~g~~v~f~~~~   84 (178)
T PF01695_consen   46 NGENLILYG-PPGTGKTHLAVAIANEAIRKGYSVLFITAS   84 (178)
T ss_dssp             C--EEEEEE-STTSSHHHHHHHHHHHHHHTT--EEEEEHH
T ss_pred             cCeEEEEEh-hHhHHHHHHHHHHHHHhccCCcceeEeecC
Confidence            345566665 579999999999999999999999998754

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=95.42  E-value=0.015  Score=45.57  Aligned_cols=39  Identities=33%  Similarity=0.412  Sum_probs=32.3

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      ..+.+. +..|+||||++..+|..+...+..+..++++..
T Consensus         3 ~~~~l~-G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~   41 (148)
T smart00382        3 EVILIV-GPPGSGKTTLARALARELGPPGGGVIYIDGEDI   41 (148)
T ss_pred             CEEEEE-CCCCCcHHHHHHHHHhccCCCCCCEEEECCEEc
Confidence            456666 558999999999999999987778888888865

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK04301 radA DNA repair and recombination protein RadA; Validated

Probab=95.41  E-value=0.053  Score=50.05  Aligned_cols=40  Identities=20%  Similarity=0.204  Sum_probs=31.1

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHC------CCcEEEEecCCC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARL------GFSVVAIDADVG   90 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~------g~~VlliD~D~~   90 (340)
                      +.++-|+ +..|+|||+++.++|...+..      +.+|++||++..
T Consensus       102 g~vtei~-G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~  147 (317)
T PRK04301        102 QSITEFY-GEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGT  147 (317)
T ss_pred             CcEEEEE-CCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCC
Confidence            4455555 789999999999999887642      359999999864

>PRK05541 adenylylsulfate kinase; Provisional

Probab=95.40  E-value=0.036  Score=46.39  Aligned_cols=40  Identities=33%  Similarity=0.309  Sum_probs=32.3

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      +.+.+|.+. +-.|+||||++..|+..+...+..+.++|.|
T Consensus         5 ~~~~~I~i~-G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d   44 (176)
T PRK05541          5 PNGYVIWIT-GLAGSGKTTIAKALYERLKLKYSNVIYLDGD   44 (176)
T ss_pred             CCCCEEEEE-cCCCCCHHHHHHHHHHHHHHcCCcEEEEecH
Confidence            344566666 6778899999999999999888888888755

>PRK09165 replicative DNA helicase; Provisional

Probab=95.36  E-value=0.023  Score=55.80  Aligned_cols=44  Identities=23%  Similarity=0.366  Sum_probs=35.4

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHC---------------CCcEEEEecCCCCCCc
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARL---------------GFSVVAIDADVGLRNL   94 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~---------------g~~VlliD~D~~~~~l   94 (340)
                      .-+.+.++..|+|||++|.|+|...++.               |.+|+++.+......+
T Consensus       217 g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql  275 (497)
T PRK09165        217 SDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQL  275 (497)
T ss_pred             CceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHH
Confidence            3466777999999999999999998853               7889999888763333

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=95.35  E-value=0.099  Score=47.33  Aligned_cols=43  Identities=23%  Similarity=0.269  Sum_probs=34.9

Q ss_pred             CCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           46 AGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      ......+|.++ +..|+||||+...+...+... .++.+|+.|..
T Consensus       100 ~~~~~~~v~l~-G~pGsGKTTLl~~l~~~l~~~-~~~~VI~gD~~  142 (290)
T PRK10463        100 AARKQLVLNLV-SSPGSGKTTLLTETLMRLKDS-VPCAVIEGDQQ  142 (290)
T ss_pred             HhcCCeEEEEE-CCCCCCHHHHHHHHHHHhccC-CCEEEECCCcC
Confidence            45667788888 568999999999999988755 58999988865

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=95.33  E-value=0.073  Score=46.49  Aligned_cols=65  Identities=15%  Similarity=0.156  Sum_probs=49.2

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      ++.+.|+|||+..  .......+..+|.+++|+.....-.......++.+...+. .+.+++|+++..
T Consensus        72 ~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~-p~ilviNKiD~~  138 (222)
T cd01885          72 EYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERV-KPVLVINKIDRL  138 (222)
T ss_pred             ceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCC-CEEEEEECCCcc
Confidence            5888999999965  3455677889999999998876555556666666665555 477999999864

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=95.33  E-value=0.026  Score=50.39  Aligned_cols=38  Identities=37%  Similarity=0.510  Sum_probs=32.0

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEec
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDA   87 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~   87 (340)
                      ..+-+.+. ++.|+|||.+|+.+|..+.++|.+|+++..
T Consensus       104 ~~~nl~l~-G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~  141 (254)
T COG1484         104 RGENLVLL-GPPGVGKTHLAIAIGNELLKAGISVLFITA  141 (254)
T ss_pred             cCCcEEEE-CCCCCcHHHHHHHHHHHHHHcCCeEEEEEH
Confidence            34456665 889999999999999999988999999854

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=95.31  E-value=0.041  Score=47.97  Aligned_cols=41  Identities=24%  Similarity=0.251  Sum_probs=35.3

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      .+.++.+. +..|+|||+++.+++...+++|.+|++++++..
T Consensus        15 ~g~~~li~-G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~   55 (224)
T TIGR03880        15 EGHVIVVI-GEYGTGKTTFSLQFLYQGLKNGEKAMYISLEER   55 (224)
T ss_pred             CCeEEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence            45667776 569999999999999998888999999999875

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1

Probab=95.30  E-value=0.084  Score=48.59  Aligned_cols=39  Identities=18%  Similarity=0.085  Sum_probs=30.1

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHH------CCCcEEEEecCCC
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLAR------LGFSVVAIDADVG   90 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~------~g~~VlliD~D~~   90 (340)
                      .|+-..+..|+|||+++.++|...+.      .|.+|++||+...
T Consensus        97 ~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~  141 (313)
T TIGR02238        97 SITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGT  141 (313)
T ss_pred             eEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCC
Confidence            44545589999999999999976542      3569999999854

This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=95.28  E-value=0.042  Score=44.90  Aligned_cols=39  Identities=31%  Similarity=0.435  Sum_probs=32.9

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEec
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDA   87 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~   87 (340)
                      +++..|.|+ +..|+||||++.-+|-.|.+.|++|.=+=+
T Consensus         3 ~~~mki~IT-G~PGvGKtTl~~ki~e~L~~~g~kvgGf~t   41 (179)
T COG1618           3 KMAMKIFIT-GRPGVGKTTLVLKIAEKLREKGYKVGGFIT   41 (179)
T ss_pred             CcceEEEEe-CCCCccHHHHHHHHHHHHHhcCceeeeEEe
Confidence            456677787 789999999999999999999999975533

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=95.23  E-value=0.041  Score=38.39  Aligned_cols=32  Identities=41%  Similarity=0.577  Sum_probs=26.3

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEec
Q 047623           53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDA   87 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~   87 (340)
                      |++. +..|+||||++..|+..|  .+.++.++|.
T Consensus         2 i~i~-G~~gsGKst~~~~l~~~l--~~~~~~~i~~   33 (69)
T cd02019           2 IAIT-GGSGSGKSTVAKKLAEQL--GGRSVVVLDE   33 (69)
T ss_pred             EEEE-CCCCCCHHHHHHHHHHHh--cCCCEEEEeE
Confidence            4454 777899999999999999  6778888765

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily

Probab=95.22  E-value=0.032  Score=53.72  Aligned_cols=40  Identities=23%  Similarity=0.365  Sum_probs=34.9

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEecCCC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLA-RLGFSVVAIDADVG   90 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la-~~g~~VlliD~D~~   90 (340)
                      .-+.+.++..|+|||+++.++|..++ +.|++|+++.++..
T Consensus       194 g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~  234 (421)
T TIGR03600       194 GDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMS  234 (421)
T ss_pred             CceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            34667779999999999999999988 67999999999875

Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=95.21  E-value=0.094  Score=44.26  Aligned_cols=40  Identities=20%  Similarity=0.231  Sum_probs=34.1

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGL   91 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~   91 (340)
                      +..|.|. +.-|+|||++...+-..|.++ +++.+|..|...
T Consensus        13 ~~~i~v~-Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~t   52 (202)
T COG0378          13 MLRIGVG-GPPGSGKTALIEKTLRALKDE-YKIAVITGDIYT   52 (202)
T ss_pred             eEEEEec-CCCCcCHHHHHHHHHHHHHhh-CCeEEEeceeec
Confidence            4667776 677899999999999999887 999999999873

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=95.18  E-value=0.14  Score=45.87  Aligned_cols=119  Identities=16%  Similarity=0.092  Sum_probs=73.7

Q ss_pred             CCEEEEcCCCCCCHHHHHH---HhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCccccc---cccc
Q 047623          167 PDFILIDCPAGIDAGFITA---ITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGE---DMMS  240 (340)
Q Consensus       167 ~D~VIiD~~~~~~~~~~~~---l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~---~~~~  240 (340)
                      -.|--+|||+.-+. ..+.   ..+.|..|+|+..+...+-++++.+=..++.+.+.+.+++|+++--.....   ....
T Consensus        75 rhyahVDcPGHaDY-vKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemE  153 (394)
T COG0050          75 RHYAHVDCPGHADY-VKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEME  153 (394)
T ss_pred             ceEEeccCCChHHH-HHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHH
Confidence            34556699987543 3333   356899999998888888888888877888999999999999886431110   1122


Q ss_pred             HHHHHHHhCCce-eEEecCChHHHHHHhcCCceEeeCCCCHHHHHHHHHHHHHHhcc
Q 047623          241 VLDIQEMLGLAL-LGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAWRLVEQD  296 (340)
Q Consensus       241 ~~~i~~~~g~~v-~~~Ip~d~~~~~a~~~g~~v~~~~~~s~~~~~~~~la~~i~~~~  296 (340)
                      ..++.+.||.+- ...|+....+....  |        ..+....+.+|.+.+-+..
T Consensus       154 vreLLs~y~f~gd~~Pii~gSal~ale--~--------~~~~~~~i~eLm~avd~yi  200 (394)
T COG0050         154 VRELLSEYGFPGDDTPIIRGSALKALE--G--------DAKWEAKIEELMDAVDSYI  200 (394)
T ss_pred             HHHHHHHcCCCCCCcceeechhhhhhc--C--------CcchHHHHHHHHHHHHhcC
Confidence            345666677662 23455544442211  1        1225556667766665554

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=95.11  E-value=0.1  Score=45.03  Aligned_cols=66  Identities=24%  Similarity=0.365  Sum_probs=45.8

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      +..+.|+|||+...  ......+..+|.+++|+.....-.....+....+...+.+.+.+|+|+.+..
T Consensus        76 ~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~  143 (208)
T cd04166          76 KRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLV  143 (208)
T ss_pred             CceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcc
Confidence            46789999998542  2334556789999999988655444444555555555555677789999864

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PRK07261 topology modulation protein; Provisional

Probab=95.11  E-value=0.28  Score=40.91  Aligned_cols=36  Identities=14%  Similarity=0.184  Sum_probs=23.1

Q ss_pred             EEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHH
Q 047623          170 ILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDA  206 (340)
Q Consensus       170 VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~  206 (340)
                      .|+|+.... ......+..||.++..--|...++..+
T Consensus        61 wIidg~~~~-~~~~~~l~~ad~vI~Ld~p~~~~~~R~   96 (171)
T PRK07261         61 WIIDGNYSW-CLYEERMQEADQIIFLNFSRFNCLYRA   96 (171)
T ss_pred             EEEcCcchh-hhHHHHHHHCCEEEEEcCCHHHHHHHH
Confidence            777886532 222455678998888877766665544

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=95.10  E-value=0.06  Score=53.95  Aligned_cols=65  Identities=18%  Similarity=0.206  Sum_probs=47.2

Q ss_pred             CCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          167 PDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      +.+.|+|+|+...  ..+...+..+|.+++|+..+..-.....+.+..+...+.+.+.+++|+++..
T Consensus        50 ~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv  116 (581)
T TIGR00475        50 YRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRV  116 (581)
T ss_pred             EEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCC
Confidence            6778999998532  2234445679999999998765445555666667777777788999999864

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional

Probab=95.09  E-value=0.054  Score=54.36  Aligned_cols=41  Identities=20%  Similarity=0.216  Sum_probs=36.5

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      ++++|.|+| ..|+||||+...|...|.++|+||..|..+-+
T Consensus         9 ~~~vi~ivG-~s~sGKTTlie~li~~L~~~G~rVavIKh~~h   49 (597)
T PRK14491          9 SIPLLGFCA-YSGTGKTTLLEQLIPELNQRGLRLAVIKHAHH   49 (597)
T ss_pred             CccEEEEEc-CCCCCHHHHHHHHHHHHHhCCceEEEEEcCCc
Confidence            478999996 57899999999999999999999999998654

>PRK09519 recA DNA recombination protein RecA; Reviewed

Probab=95.07  E-value=0.17  Score=52.05  Aligned_cols=41  Identities=29%  Similarity=0.274  Sum_probs=34.5

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      .+.++-+. +..|+||||++.+++...++.|.+|++||+...
T Consensus        59 ~GsiteI~-G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t   99 (790)
T PRK09519         59 RGRVIEIY-GPESSGKTTVALHAVANAQAAGGVAAFIDAEHA   99 (790)
T ss_pred             CCeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEECCccc
Confidence            34555555 789999999999999988889999999999865

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=95.07  E-value=0.037  Score=48.26  Aligned_cols=39  Identities=33%  Similarity=0.284  Sum_probs=31.7

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHH--CCCcEEEEecCCCC
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLAR--LGFSVVAIDADVGL   91 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~--~g~~VlliD~D~~~   91 (340)
                      +|++. +..|+||||+|..|+..+..  .+.+|.+|.+|...
T Consensus         1 IigI~-G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~   41 (220)
T cd02025           1 IIGIA-GSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL   41 (220)
T ss_pred             CEEee-CCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence            35666 77899999999999999986  56789999888653

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>TIGR00708 cobA cob(I)alamin adenosyltransferase

Probab=95.05  E-value=0.049  Score=45.41  Aligned_cols=37  Identities=30%  Similarity=0.247  Sum_probs=30.4

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      +.+..++  ..|.||||.|..+|..++.+|++|+++-+-
T Consensus         6 Gli~v~~--g~GkGKtt~a~g~a~ra~~~g~~v~ivQFl   42 (173)
T TIGR00708         6 GIIIVHT--GNGKGKTTAAFGMALRALGHGKKVGVIQFI   42 (173)
T ss_pred             cEEEEEC--CCCCChHHHHHHHHHHHHHCCCeEEEEEEe
Confidence            4444444  389999999999999999999999988654

Alternate name: corrinoid adenosyltransferase.

>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional

Probab=95.01  E-value=0.061  Score=50.73  Aligned_cols=42  Identities=21%  Similarity=0.277  Sum_probs=37.3

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      .++++|.|+| ..|+||||+...|...|.++|++|.+|.-|.+
T Consensus       203 ~~~~~~~~~g-~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~~h  244 (366)
T PRK14489        203 GAPPLLGVVG-YSGTGKTTLLEKLIPELIARGYRIGLIKHSHH  244 (366)
T ss_pred             CCccEEEEec-CCCCCHHHHHHHHHHHHHHcCCEEEEEEECCc
Confidence            3578999995 67899999999999999999999999997755

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=95.00  E-value=0.39  Score=46.12  Aligned_cols=65  Identities=20%  Similarity=0.276  Sum_probs=43.4

Q ss_pred             CCCEEEEcCCCCCC---------HHHHHHHhcCCeEEEEeCCCh----hhHHHHHHHHHHHHhcC----CCceEEEEecc
Q 047623          166 SPDFILIDCPAGID---------AGFITAITPANEAVLVTTPDI----TSLRDADRVTGLLECDG----IRDIKMVVNRV  228 (340)
Q Consensus       166 ~~D~VIiD~~~~~~---------~~~~~~l~~ad~viiv~~~~~----~s~~~~~~~~~~l~~~~----~~~~~vviN~~  228 (340)
                      .+.++++|+|+-..         ......+..||.++.+++.+.    ..+.....+.+.+..+.    .....+|+|++
T Consensus       205 ~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~  284 (424)
T PRK12297        205 GRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKM  284 (424)
T ss_pred             CceEEEEECCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCC
Confidence            36799999998421         122333456999999998843    45566666666666532    24677999999


Q ss_pred             cC
Q 047623          229 RT  230 (340)
Q Consensus       229 ~~  230 (340)
                      +-
T Consensus       285 DL  286 (424)
T PRK12297        285 DL  286 (424)
T ss_pred             CC
Confidence            84

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=94.97  E-value=0.027  Score=47.93  Aligned_cols=36  Identities=28%  Similarity=0.351  Sum_probs=31.0

Q ss_pred             EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           55 ITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        55 v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      +..+=.|+||||+|-+||..|.+.+.+|..+..|..
T Consensus         5 IlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~   40 (261)
T COG4088           5 ILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYL   40 (261)
T ss_pred             EEecCCCCCchHHHHHHHHHHHHhhhhccccchhhh
Confidence            344788999999999999999999999988777654

>PLN03187 meiotic recombination protein DMC1 homolog; Provisional

Probab=94.95  E-value=0.12  Score=48.25  Aligned_cols=40  Identities=20%  Similarity=0.179  Sum_probs=31.1

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHH---C---CCcEEEEecCCC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLAR---L---GFSVVAIDADVG   90 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~---~---g~~VlliD~D~~   90 (340)
                      ..|+-..+..|+|||+++.++|...+.   .   +.+|++||..-.
T Consensus       126 G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~t  171 (344)
T PLN03187        126 RCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGT  171 (344)
T ss_pred             CeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCC
Confidence            456656689999999999999976652   1   369999999854

>PHA00729 NTP-binding motif containing protein

Probab=94.90  E-value=0.038  Score=48.09  Aligned_cols=25  Identities=40%  Similarity=0.421  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHH
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLA   76 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la   76 (340)
                      ..|.++ +..|+||||+|..||..+.
T Consensus        18 ~nIlIt-G~pGvGKT~LA~aLa~~l~   42 (226)
T PHA00729         18 VSAVIF-GKQGSGKTTYALKVARDVF   42 (226)
T ss_pred             EEEEEE-CCCCCCHHHHHHHHHHHHH
Confidence            356666 5789999999999999875

>PRK06526 transposase; Provisional

Probab=94.86  E-value=0.021  Score=50.93  Aligned_cols=35  Identities=29%  Similarity=0.435  Sum_probs=29.0

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEe
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAID   86 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD   86 (340)
                      .-+.++ +..|+|||++|..++..+.++|++|+++.
T Consensus        99 ~nlll~-Gp~GtGKThLa~al~~~a~~~g~~v~f~t  133 (254)
T PRK06526         99 ENVVFL-GPPGTGKTHLAIGLGIRACQAGHRVLFAT  133 (254)
T ss_pred             ceEEEE-eCCCCchHHHHHHHHHHHHHCCCchhhhh
Confidence            345555 67899999999999999999999987743

>PRK08506 replicative DNA helicase; Provisional

Probab=94.80  E-value=0.049  Score=53.15  Aligned_cols=44  Identities=20%  Similarity=0.248  Sum_probs=37.5

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCc
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNL   94 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l   94 (340)
                      .-+.|.++..|+|||+++.|+|..+++.|.+|+++.+......+
T Consensus       192 G~LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEMs~~ql  235 (472)
T PRK08506        192 GDLIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEMPAEQL  235 (472)
T ss_pred             CceEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcCCHHHH
Confidence            44677789999999999999999999889999999998763333

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=94.80  E-value=0.56  Score=43.32  Aligned_cols=35  Identities=26%  Similarity=0.317  Sum_probs=26.3

Q ss_pred             EEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           54 VITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        54 ~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      +|.++==|+||||+-.+|.....  |+|+++|=-+..
T Consensus         4 tvitGFLGsGKTTlL~~lL~~~~--g~kiAVIVNEfG   38 (323)
T COG0523           4 TVITGFLGSGKTTLLNHLLANRD--GKKIAVIVNEFG   38 (323)
T ss_pred             EEEeecCCCCHHHHHHHHHhccC--CCcEEEEEecCc
Confidence            44445568999999988877655  899999866653

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=94.75  E-value=0.5  Score=43.94  Aligned_cols=156  Identities=17%  Similarity=0.216  Sum_probs=83.5

Q ss_pred             CCCCEEEEEEcCCCCCcHHHHHHH--HHHHHHHCCC----cEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCcccc
Q 047623           47 GETPRVVVITSGKGGVGKTTTTAN--VGLSLARLGF----SVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQ  120 (340)
Q Consensus        47 ~~~~~iI~v~s~kGGvGKTt~a~~--LA~~la~~g~----~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~  120 (340)
                      ...-+++..-+++||-|.+.+..+  -|-..++.|.    +.+.+++-.- .++ .+.|..+.-..+|...+.+......
T Consensus       109 ~~~~~~~~a~gg~gg~gn~~f~~~~~~~p~~~~~g~~g~~~~~~lelk~~-adV-glVG~PNaGKSTLln~ls~a~~~va  186 (335)
T PRK12299        109 EHGQRFLVAKGGKGGLGNAHFKSSTNRAPRYATPGEPGEERWLRLELKLL-ADV-GLVGLPNAGKSTLISAVSAAKPKIA  186 (335)
T ss_pred             CCCcEEEEecCCCCcCCchhhccccCCCCccccCCCCCcEEEEEEEEccc-CCE-EEEcCCCCCHHHHHHHHHcCCCccC
Confidence            345578888899999998776532  2333444432    3444444332 221 2344444434455555544321100


Q ss_pred             ceecccccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCC---------HHHHHHHhcCCe
Q 047623          121 ALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGID---------AGFITAITPANE  191 (340)
Q Consensus       121 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~---------~~~~~~l~~ad~  191 (340)
                      .....+..+++..+-                           ..+...++|+|+|+-..         ..+...+..||.
T Consensus       187 ~ypfTT~~p~~G~v~---------------------------~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~v  239 (335)
T PRK12299        187 DYPFTTLHPNLGVVR---------------------------VDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRL  239 (335)
T ss_pred             CCCCceeCceEEEEE---------------------------eCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCE
Confidence            000011112222110                           00135689999998431         222334566999


Q ss_pred             EEEEeCCChh-hHHHHHHHHHHHHhcC----CCceEEEEecccCC
Q 047623          192 AVLVTTPDIT-SLRDADRVTGLLECDG----IRDIKMVVNRVRTD  231 (340)
Q Consensus       192 viiv~~~~~~-s~~~~~~~~~~l~~~~----~~~~~vviN~~~~~  231 (340)
                      +++|++.+.. +.+.+..+.+.+..+.    ...+.+|+|+.+-.
T Consensus       240 lI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~  284 (335)
T PRK12299        240 LLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLL  284 (335)
T ss_pred             EEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccC
Confidence            9999987643 4666666777776532    24678999999853

>smart00053 DYNc Dynamin, GTPase

Probab=94.68  E-value=1.1  Score=39.64  Aligned_cols=65  Identities=15%  Similarity=0.092  Sum_probs=39.6

Q ss_pred             CCEEEEcCCCCCC-------H--------HHHHHHhc-CCeEEEEeCCCh-hhHHHHHHHHHHHHhcCCCceEEEEeccc
Q 047623          167 PDFILIDCPAGID-------A--------GFITAITP-ANEAVLVTTPDI-TSLRDADRVTGLLECDGIRDIKMVVNRVR  229 (340)
Q Consensus       167 ~D~VIiD~~~~~~-------~--------~~~~~l~~-ad~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~vviN~~~  229 (340)
                      .|+++||+|+-..       .        .....+.. .+.++.++.... ..-....++.+.++.. ..+..+|+|+++
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~-~~rti~ViTK~D  203 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQ-GERTIGVITKLD  203 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHc-CCcEEEEEECCC
Confidence            8999999999541       1        12334443 456666665432 1222345666666654 356778999998


Q ss_pred             CCc
Q 047623          230 TDM  232 (340)
Q Consensus       230 ~~~  232 (340)
                      .-.
T Consensus       204 ~~~  206 (240)
T smart00053      204 LMD  206 (240)
T ss_pred             CCC
Confidence            754

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>PRK09183 transposase/IS protein; Provisional

Probab=94.65  E-value=0.06  Score=48.22  Aligned_cols=37  Identities=32%  Similarity=0.465  Sum_probs=30.6

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEec
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDA   87 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~   87 (340)
                      +..+.++ +..|+|||+++..+|..+.+.|++|+++++
T Consensus       102 ~~~v~l~-Gp~GtGKThLa~al~~~a~~~G~~v~~~~~  138 (259)
T PRK09183        102 NENIVLL-GPSGVGKTHLAIALGYEAVRAGIKVRFTTA  138 (259)
T ss_pred             CCeEEEE-eCCCCCHHHHHHHHHHHHHHcCCeEEEEeH
Confidence            3455566 677999999999999998899999998863

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=94.56  E-value=0.056  Score=46.14  Aligned_cols=36  Identities=33%  Similarity=0.350  Sum_probs=29.0

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      +|++. +..|+||||++..|+..+  .+.++.++.+|..
T Consensus         1 iigi~-G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~   36 (198)
T cd02023           1 IIGIA-GGSGSGKTTVAEEIIEQL--GNPKVVIISQDSY   36 (198)
T ss_pred             CEEEE-CCCCCCHHHHHHHHHHHh--CCCCeEEEEeccc
Confidence            35666 568999999999999988  5568889998854

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK06749 replicative DNA helicase; Provisional

Probab=94.53  E-value=0.055  Score=52.07  Aligned_cols=40  Identities=28%  Similarity=0.370  Sum_probs=35.8

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      .-+.|.++..|+|||+++.|+|...++.|++|+++.+...
T Consensus       186 G~LiiIaarPgmGKTafal~ia~~~a~~g~~v~~fSlEMs  225 (428)
T PRK06749        186 GDFVVLGARPSMGKTAFALNVGLHAAKSGAAVGLFSLEMS  225 (428)
T ss_pred             CcEEEEEeCCCCCchHHHHHHHHHHHhcCCCEEEEEeeCC
Confidence            3466777999999999999999999998999999998876

>PRK08760 replicative DNA helicase; Provisional

Probab=94.53  E-value=0.054  Score=52.90  Aligned_cols=41  Identities=20%  Similarity=0.202  Sum_probs=35.2

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEecCCCC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLAR-LGFSVVAIDADVGL   91 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~-~g~~VlliD~D~~~   91 (340)
                      .-+.|.++..|+|||+++.|+|...+. .|++|+++.++...
T Consensus       229 G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~  270 (476)
T PRK08760        229 TDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSA  270 (476)
T ss_pred             CceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCH
Confidence            356677799999999999999999885 59999999998763

>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated

Probab=94.52  E-value=0.35  Score=40.42  Aligned_cols=39  Identities=18%  Similarity=0.056  Sum_probs=30.4

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      ..+.+...  +..|=||||.|..+|.-.+-+|+||+++-+=
T Consensus        20 ~~Gli~VY--tGdGKGKTTAAlGlalRAaG~G~rV~iiQFl   58 (178)
T PRK07414         20 IEGLVQVF--TSSQRNFFTSVMAQALRIAGQGTPVLIVQFL   58 (178)
T ss_pred             CCCEEEEE--eCCCCCchHHHHHHHHHHhcCCCEEEEEEEe
Confidence            34444443  3457799999999999999999999999764

>PRK12377 putative replication protein; Provisional

Probab=94.52  E-value=0.062  Score=47.71  Aligned_cols=37  Identities=32%  Similarity=0.461  Sum_probs=31.0

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      .-+.++ +..|+|||.+|..+|..+.+.|++|.++...
T Consensus       102 ~~l~l~-G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~  138 (248)
T PRK12377        102 TNFVFS-GKPGTGKNHLAAAIGNRLLAKGRSVIVVTVP  138 (248)
T ss_pred             CeEEEE-CCCCCCHHHHHHHHHHHHHHcCCCeEEEEHH
Confidence            345555 6789999999999999999999999888664

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=94.50  E-value=0.53  Score=43.69  Aligned_cols=65  Identities=15%  Similarity=0.221  Sum_probs=43.5

Q ss_pred             CCEEEEcCCCCCC---------HHHHHHHhcCCeEEEEeCCCh----hhHHHHHHHHHHHHhcC----CCceEEEEeccc
Q 047623          167 PDFILIDCPAGID---------AGFITAITPANEAVLVTTPDI----TSLRDADRVTGLLECDG----IRDIKMVVNRVR  229 (340)
Q Consensus       167 ~D~VIiD~~~~~~---------~~~~~~l~~ad~viiv~~~~~----~s~~~~~~~~~~l~~~~----~~~~~vviN~~~  229 (340)
                      ..++|+|+|+...         ......+..||.+++|++.+.    ..++.+..+.+.+....    ...+.+|+|+++
T Consensus       205 ~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~D  284 (329)
T TIGR02729       205 RSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKID  284 (329)
T ss_pred             eEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCcc
Confidence            6789999998531         122333456999999998865    35566666666665432    246779999998


Q ss_pred             CC
Q 047623          230 TD  231 (340)
Q Consensus       230 ~~  231 (340)
                      ..
T Consensus       285 L~  286 (329)
T TIGR02729       285 LL  286 (329)
T ss_pred             CC
Confidence            63

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=94.49  E-value=0.068  Score=46.47  Aligned_cols=41  Identities=17%  Similarity=0.169  Sum_probs=33.7

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      ....+.++ +..|+|||++|..++..+.+.|.+++.++++.-
T Consensus        37 ~~~~lll~-G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~   77 (226)
T TIGR03420        37 GDRFLYLW-GESGSGKSHLLQAACAAAEERGKSAIYLPLAEL   77 (226)
T ss_pred             CCCeEEEE-CCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence            34566666 677999999999999998888889999988643

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=94.45  E-value=0.88  Score=44.65  Aligned_cols=42  Identities=17%  Similarity=0.120  Sum_probs=34.0

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEecCCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARL-GFSVVAIDADVG   90 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~-g~~VlliD~D~~   90 (340)
                      +.+.++.|. +..|+||||+|.+++..-+++ |.++++|.++..
T Consensus        19 p~g~~~Li~-G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~   61 (484)
T TIGR02655        19 PIGRSTLVS-GTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEES   61 (484)
T ss_pred             CCCeEEEEE-cCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC
Confidence            345566666 788999999999999876655 999999999855

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional

Probab=94.44  E-value=0.11  Score=48.32  Aligned_cols=43  Identities=30%  Similarity=0.363  Sum_probs=37.7

Q ss_pred             CCCEEEEEEc-CCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           48 ETPRVVVITS-GKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        48 ~~~~iI~v~s-~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      -..++|+|.| +-||+|||-++..||..|.++|++|.++-=.+.
T Consensus        54 ~pvPVIsVGNitvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg   97 (338)
T PRK01906         54 LGVPVVVVGNVTVGGTGKTPTVIALVDALRAAGFTPGVVSRGYG   97 (338)
T ss_pred             CCCCEEEECCccCCCCChHHHHHHHHHHHHHcCCceEEEecCCC
Confidence            3457898887 469999999999999999999999999987775

>PTZ00035 Rad51 protein; Provisional

Probab=94.43  E-value=0.18  Score=46.99  Aligned_cols=41  Identities=20%  Similarity=0.114  Sum_probs=30.8

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHH------CCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLAR------LGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~------~g~~VlliD~D~~   90 (340)
                      .+.++.++ +..|+|||+++..++.....      .+.+|++||....
T Consensus       117 ~G~iteI~-G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~  163 (337)
T PTZ00035        117 TGSITELF-GEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGT  163 (337)
T ss_pred             CCeEEEEE-CCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCC
Confidence            34555555 79999999999999876542      4569999998754

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=94.39  E-value=0.1  Score=43.61  Aligned_cols=43  Identities=33%  Similarity=0.451  Sum_probs=28.8

Q ss_pred             CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      ...++.+.|. +..|+|||++...+...+.+.+.-++.++++..
T Consensus        21 ~~~~~~~ll~-G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~   63 (185)
T PF13191_consen   21 SGSPRNLLLT-GESGSGKTSLLRALLDRLAERGGYVISINCDDS   63 (185)
T ss_dssp             S-----EEE--B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred             cCCCcEEEEE-CCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence            3444566665 788999999999999999987544888888876

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=94.35  E-value=0.41  Score=45.52  Aligned_cols=157  Identities=16%  Similarity=0.185  Sum_probs=83.7

Q ss_pred             CCCCCEEEEEEcCCCCCcHHHHHHHH--HHHHHHCCCc----EEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccc
Q 047623           46 AGETPRVVVITSGKGGVGKTTTTANV--GLSLARLGFS----VVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLD  119 (340)
Q Consensus        46 ~~~~~~iI~v~s~kGGvGKTt~a~~L--A~~la~~g~~----VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~  119 (340)
                      ....-+++..-+++||-|.+.+..+.  +-.+++.|.+    .+.+++..- .. -.+.|..+.-..+|...+.+....-
T Consensus       109 ~~~~~~~~~a~GG~gG~gn~~f~~~~~~~p~~~~~g~~g~~~~~~lelk~i-ad-ValVG~PNaGKSTLln~Lt~~k~~v  186 (390)
T PRK12298        109 TEHGQRLLVAKGGWHGLGNTRFKSSVNRAPRQKTPGTPGEERELKLELKLL-AD-VGLLGLPNAGKSTFIRAVSAAKPKV  186 (390)
T ss_pred             ccCCcEEEEecCCCCccchhhhccCccCCCcccCCCCCCceEEEEEeeecc-cc-EEEEcCCCCCHHHHHHHHhCCcccc
Confidence            34556788889999999998765433  2233444432    333333322 11 2334555544456666665432210


Q ss_pred             cceecccccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCC---------HHHHHHHhcCC
Q 047623          120 QALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGID---------AGFITAITPAN  190 (340)
Q Consensus       120 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~---------~~~~~~l~~ad  190 (340)
                      ......+..+.+.++..                           .+...++++|+|+-..         ..+...+..+|
T Consensus       187 s~~p~TT~~p~~Giv~~---------------------------~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~rad  239 (390)
T PRK12298        187 ADYPFTTLVPNLGVVRV---------------------------DDERSFVVADIPGLIEGASEGAGLGIRFLKHLERCR  239 (390)
T ss_pred             cCCCCCccCcEEEEEEe---------------------------CCCcEEEEEeCCCccccccchhhHHHHHHHHHHhCC
Confidence            00001111122222100                           0013489999999532         12334567899


Q ss_pred             eEEEEeCCC----hhhHHHHHHHHHHHHhcC----CCceEEEEecccCC
Q 047623          191 EAVLVTTPD----ITSLRDADRVTGLLECDG----IRDIKMVVNRVRTD  231 (340)
Q Consensus       191 ~viiv~~~~----~~s~~~~~~~~~~l~~~~----~~~~~vviN~~~~~  231 (340)
                      .++.+++..    .........+.+.+....    .....+|+|+.+..
T Consensus       240 vlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~  288 (390)
T PRK12298        240 VLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLL  288 (390)
T ss_pred             EEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccC
Confidence            999999765    234555566666665532    24577889999863

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=94.34  E-value=0.091  Score=41.45  Aligned_cols=41  Identities=27%  Similarity=0.382  Sum_probs=33.5

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      ..+.+.++ +..|+|||+++..++..+.+.+.++..+++...
T Consensus        18 ~~~~v~i~-G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~   58 (151)
T cd00009          18 PPKNLLLY-GPPGTGKTTLARAIANELFRPGAPFLYLNASDL   58 (151)
T ss_pred             CCCeEEEE-CCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhh
Confidence            33455565 788999999999999999888889999888654

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=94.31  E-value=1.4  Score=41.16  Aligned_cols=36  Identities=31%  Similarity=0.368  Sum_probs=27.7

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      |.+.++==|+||||+--++...  ..|.++++|-.|..
T Consensus         6 v~iltGFLGaGKTTll~~ll~~--~~~~~iavi~Ne~G   41 (341)
T TIGR02475         6 VTIVTGFLGAGKTTLIRHLLQN--AAGRRIAVIVNEFG   41 (341)
T ss_pred             EEEEEECCCCCHHHHHHHHHhc--cCCCcEEEEECCCc
Confidence            3445567799999999998763  36889999987765

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=94.30  E-value=0.19  Score=43.79  Aligned_cols=38  Identities=18%  Similarity=0.219  Sum_probs=32.2

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      ..+.++ +..|+|||++|..++..+.+.|.++..+++..
T Consensus        43 ~~~~l~-G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~   80 (227)
T PRK08903         43 RFFYLW-GEAGSGRSHLLQALVADASYGGRNARYLDAAS   80 (227)
T ss_pred             CeEEEE-CCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence            344444 88899999999999999988999999999865

>PRK06217 hypothetical protein; Validated

Probab=94.28  E-value=0.072  Score=44.92  Aligned_cols=33  Identities=33%  Similarity=0.419  Sum_probs=24.4

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      +.|.|+ +-.|+||||+|..||..+   |.+  .+|+|.
T Consensus         2 ~~I~i~-G~~GsGKSTla~~L~~~l---~~~--~~~~D~   34 (183)
T PRK06217          2 MRIHIT-GASGSGTTTLGAALAERL---DIP--HLDTDD   34 (183)
T ss_pred             eEEEEE-CCCCCCHHHHHHHHHHHc---CCc--EEEcCc
Confidence            346666 678899999999999766   444  577774

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=94.27  E-value=0.097  Score=44.41  Aligned_cols=37  Identities=30%  Similarity=0.384  Sum_probs=30.8

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEec
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDA   87 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~   87 (340)
                      +++|+|. +--|+||||++..|+..+...|++|..+..
T Consensus         3 g~~Ivie-G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~   39 (195)
T TIGR00041         3 GMFIVIE-GIDGAGKTTQANLLKKLLQENGYDVLFTRE   39 (195)
T ss_pred             ceEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence            4667777 667889999999999999999999877644

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>PLN02924 thymidylate kinase

Probab=94.26  E-value=0.11  Score=45.19  Aligned_cols=41  Identities=22%  Similarity=0.228  Sum_probs=33.7

Q ss_pred             CCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEec
Q 047623           46 AGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDA   87 (340)
Q Consensus        46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~   87 (340)
                      ..++++.|+|- +-.|+||||.+..|+..|..+|++|.++..
T Consensus        12 ~~~~g~~IviE-GiDGsGKsTq~~~L~~~l~~~g~~v~~~~e   52 (220)
T PLN02924         12 VESRGALIVLE-GLDRSGKSTQCAKLVSFLKGLGVAAELWRF   52 (220)
T ss_pred             cCCCCeEEEEE-CCCCCCHHHHHHHHHHHHHhcCCCceeeeC
Confidence            34566778887 677899999999999999999999866543

>cd04111 Rab39 Rab39 subfamily

Probab=94.22  E-value=0.91  Score=39.14  Aligned_cols=142  Identities=9%  Similarity=-0.057  Sum_probs=79.8

Q ss_pred             CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc-CC--CceEEEEecccCCccccccccc
Q 047623          167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD-GI--RDIKMVVNRVRTDMIKGEDMMS  240 (340)
Q Consensus       167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~-~~--~~~~vviN~~~~~~~~~~~~~~  240 (340)
                      +.+.|+|+++..  .......+..+|.++++.+.+ ..++..+...++.+... ..  ..+.+|.|+.+-..........
T Consensus        52 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~  131 (211)
T cd04111          52 IKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREE  131 (211)
T ss_pred             EEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHH
Confidence            678899999854  233345567899988888874 56777777777766543 22  2456788998753211111111


Q ss_pred             HHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCC--CHHHHHHHHHHHHHHhccccchhhhccCccccchhhhhcc
Q 047623          241 VLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPP--TLAGLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFSFFGL  318 (340)
Q Consensus       241 ~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~--s~~~~~~~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (340)
                      ...+.+.+                    +.++.+...+  ......+..|++.+.+..... +......-++.-.++..+
T Consensus       132 ~~~~~~~~--------------------~~~~~e~Sak~g~~v~e~f~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  190 (211)
T cd04111         132 AEKLAKDL--------------------GMKYIETSARTGDNVEEAFELLTQEIYERIKRG-ELCALDGWDGVKSGFPAG  190 (211)
T ss_pred             HHHHHHHh--------------------CCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcC-CCCccccccccccCCCcc
Confidence            22222222                    2333343322  235677777777777665332 112233334445566677


Q ss_pred             ceeeEEEecee
Q 047623          319 GVLAVTVGLEV  329 (340)
Q Consensus       319 ~~~~~~~~~~~  329 (340)
                      ++++.+-|.|.
T Consensus       191 ~~~~~~~~~~~  201 (211)
T cd04111         191 RAFSLEERSPT  201 (211)
T ss_pred             cccccCccccc
Confidence            77777777653

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PRK08006 replicative DNA helicase; Provisional

Probab=94.20  E-value=0.077  Score=51.70  Aligned_cols=40  Identities=20%  Similarity=0.228  Sum_probs=34.9

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEecCCC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLAR-LGFSVVAIDADVG   90 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~-~g~~VlliD~D~~   90 (340)
                      .-+.|.++..|+|||++|.|+|..+|. .|++|+++.+...
T Consensus       224 G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~  264 (471)
T PRK08006        224 SDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMP  264 (471)
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence            456677799999999999999999984 5999999998876

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=94.20  E-value=0.75  Score=42.48  Aligned_cols=36  Identities=28%  Similarity=0.475  Sum_probs=27.4

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      |.+.++==|+||||+--++...  ..|.++++|-.|..
T Consensus         6 v~iltGFLGaGKTTll~~ll~~--~~~~riaVi~NEfG   41 (318)
T PRK11537          6 VTLLTGFLGAGKTTLLRHILNE--QHGYKIAVIENEFG   41 (318)
T ss_pred             EEEEEECCCCCHHHHHHHHHhc--ccCCcccccccCcC
Confidence            4444567789999999998753  46889999877764

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=94.17  E-value=0.36  Score=39.60  Aligned_cols=92  Identities=20%  Similarity=0.204  Sum_probs=58.2

Q ss_pred             CCCEEEEcCCCC--CC---H---HHHHHH--hcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccc
Q 047623          166 SPDFILIDCPAG--ID---A---GFITAI--TPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKG  235 (340)
Q Consensus       166 ~~D~VIiD~~~~--~~---~---~~~~~l--~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~  235 (340)
                      +..+.++|+|+-  +.   .   .....+  ...|.++.|+++..  ++.-..+..++.+.+. .+.+++|+++......
T Consensus        46 ~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~-P~vvvlN~~D~a~~~g  122 (156)
T PF02421_consen   46 DQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGI-PVVVVLNKMDEAERKG  122 (156)
T ss_dssp             TEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTS-SEEEEEETHHHHHHTT
T ss_pred             CceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCC-CEEEEEeCHHHHHHcC
Confidence            478899999982  21   1   223333  46899999998865  4444566666666664 4779999998754322


Q ss_pred             cccccHHHHHHHhCCceeEEecCChH
Q 047623          236 EDMMSVLDIQEMLGLALLGVIPEDSE  261 (340)
Q Consensus       236 ~~~~~~~~i~~~~g~~v~~~Ip~d~~  261 (340)
                       .....+.+.+.+|.+++.+......
T Consensus       123 -~~id~~~Ls~~Lg~pvi~~sa~~~~  147 (156)
T PF02421_consen  123 -IEIDAEKLSERLGVPVIPVSARTGE  147 (156)
T ss_dssp             -EEE-HHHHHHHHTS-EEEEBTTTTB
T ss_pred             -CEECHHHHHHHhCCCEEEEEeCCCc
Confidence             3345788999999998877665543

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=94.15  E-value=0.21  Score=45.99  Aligned_cols=97  Identities=22%  Similarity=0.227  Sum_probs=71.8

Q ss_pred             CCCEEEEcCCCCCCHHHHHH---HhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCccccccc----
Q 047623          166 SPDFILIDCPAGIDAGFITA---ITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDM----  238 (340)
Q Consensus       166 ~~D~VIiD~~~~~~~~~~~~---l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~----  238 (340)
                      +-++||.|||+... .+.++   ...||..|+.++....-+.+++|..-...-.|++.+.+.+|+.+--....+.+    
T Consensus        85 KRkFIiADTPGHeQ-YTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~~I~  163 (431)
T COG2895          85 KRKFIIADTPGHEQ-YTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFEAIV  163 (431)
T ss_pred             cceEEEecCCcHHH-HhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCHHHHHHHH
Confidence            57899999999642 23333   45699999999999999999998877777789999999999987544332222    


Q ss_pred             ccHHHHHHHhCCceeEEecCChHHH
Q 047623          239 MSVLDIQEMLGLALLGVIPEDSEVI  263 (340)
Q Consensus       239 ~~~~~i~~~~g~~v~~~Ip~d~~~~  263 (340)
                      .....+.+.+|.....+||-+.-..
T Consensus       164 ~dy~~fa~~L~~~~~~~IPiSAl~G  188 (431)
T COG2895         164 ADYLAFAAQLGLKDVRFIPISALLG  188 (431)
T ss_pred             HHHHHHHHHcCCCcceEEechhccC
Confidence            2234667778888888999765544

>cd04177 RSR1 RSR1 subgroup

Probab=94.13  E-value=0.95  Score=37.12  Aligned_cols=65  Identities=15%  Similarity=0.063  Sum_probs=40.3

Q ss_pred             CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCC-ChhhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623          167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTP-DITSLRDADRVTGLLECD---GIRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~  231 (340)
                      +.+-|+|+|+..  .......+..+|.++++... +..++.......+.+...   ....+.++.|+.+..
T Consensus        49 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~  119 (168)
T cd04177          49 CDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLE  119 (168)
T ss_pred             EEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcc
Confidence            567888998844  33444455678877766554 455676766666655431   123456788998753

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=94.13  E-value=0.53  Score=48.51  Aligned_cols=65  Identities=20%  Similarity=0.334  Sum_probs=41.0

Q ss_pred             CCCEEEEcCCCCCC----------HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGID----------AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~----------~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      .+.+.++|||+...          .....++..||.+++|++....-...-..+.+.++..+ ..+.+|+|+++..
T Consensus       322 ~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~-~pvIlV~NK~D~~  396 (712)
T PRK09518        322 GTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAG-KPVVLAVNKIDDQ  396 (712)
T ss_pred             CEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcC-CCEEEEEECcccc
Confidence            35678899998432          11233567899999999875421122234555665543 4677899999863

>TIGR00235 udk uridine kinase

Probab=94.11  E-value=0.083  Score=45.51  Aligned_cols=40  Identities=28%  Similarity=0.359  Sum_probs=29.8

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      +.+.+|+|. +..|+||||++..|+..+..  ..+.++..|..
T Consensus         4 ~~g~vi~I~-G~sGsGKSTl~~~l~~~l~~--~~~~~i~~D~~   43 (207)
T TIGR00235         4 PKGIIIGIG-GGSGSGKTTVARKIYEQLGK--LEIVIISQDNY   43 (207)
T ss_pred             CCeEEEEEE-CCCCCCHHHHHHHHHHHhcc--cCCeEeccccc
Confidence            556677777 78899999999999988764  35666666653

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>TIGR00665 DnaB replicative DNA helicase

Probab=94.10  E-value=0.087  Score=50.90  Aligned_cols=43  Identities=19%  Similarity=0.239  Sum_probs=36.0

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEecCCCCCC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLAR-LGFSVVAIDADVGLRN   93 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~-~g~~VlliD~D~~~~~   93 (340)
                      .-+.+.++..|+|||+++.++|..++. .|.+|+++.++.....
T Consensus       195 G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~  238 (434)
T TIGR00665       195 SDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQ  238 (434)
T ss_pred             CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHH
Confidence            346677799999999999999999886 5999999999976333

This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=94.08  E-value=0.19  Score=41.06  Aligned_cols=65  Identities=15%  Similarity=0.209  Sum_probs=44.6

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      .+++.++|+|+...  ......+..+|.+++++..+..........++.+...+. .+.+|+|+.+..
T Consensus        49 ~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~-p~ivv~NK~Dl~  115 (168)
T cd01887          49 IPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANV-PFIVALNKIDKP  115 (168)
T ss_pred             cceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCC-CEEEEEEceecc
Confidence            58999999998643  223445678999999998875433444444555555444 478899999854

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd04155 Arl3 Arl3 subfamily

Probab=93.99  E-value=1.4  Score=36.20  Aligned_cols=66  Identities=9%  Similarity=-0.041  Sum_probs=39.0

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCCh-hhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDI-TSLRDADRVTGLLECD---GIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~  231 (340)
                      .+++.++|+++...  ......+..+|.++++.+... .++......+..+...   ....+.+++|+.+..
T Consensus        57 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  128 (173)
T cd04155          57 GFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLA  128 (173)
T ss_pred             CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCc
Confidence            36778899988532  233445677898888877643 3344444333333211   123567888998753

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown

Probab=93.97  E-value=0.094  Score=45.82  Aligned_cols=39  Identities=28%  Similarity=0.354  Sum_probs=32.9

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEecCCC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLA-RLGFSVVAIDADVG   90 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la-~~g~~VlliD~D~~   90 (340)
                      +-++|+ +..|+|||+++..|...+. +.|.+++++|..-.
T Consensus        24 ~H~~I~-G~TGsGKS~~~~~ll~~l~~~~~~~~ii~D~~GE   63 (229)
T PF01935_consen   24 RHIAIF-GTTGSGKSNTVKVLLEELLKKKGAKVIIFDPHGE   63 (229)
T ss_pred             ceEEEE-CCCCCCHHHHHHHHHHHHHhcCCCCEEEEcCCCc
Confidence            456777 6678899999999999999 78999999988643

It contains several conserved aspartates and histidines that could be metal ligands.

>PLN03186 DNA repair protein RAD51 homolog; Provisional

Probab=93.95  E-value=0.18  Score=46.94  Aligned_cols=40  Identities=15%  Similarity=0.033  Sum_probs=30.3

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHH------CCCcEEEEecCCC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLAR------LGFSVVAIDADVG   90 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~------~g~~VlliD~D~~   90 (340)
                      ..|+...+..|+|||+++.++|.....      .+.+|++||+...
T Consensus       123 g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~  168 (342)
T PLN03186        123 GSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGT  168 (342)
T ss_pred             ceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCC
Confidence            445555589999999999999975442      1248999999864

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=93.94  E-value=0.1  Score=44.08  Aligned_cols=36  Identities=31%  Similarity=0.419  Sum_probs=30.0

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      +|+|. +--|+||||++..|+..+...|.+|..+...
T Consensus         2 ~I~ie-G~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~   37 (200)
T cd01672           2 FIVFE-GIDGAGKTTLIELLAERLEARGYEVVLTREP   37 (200)
T ss_pred             EEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence            56666 6778999999999999999999999776543

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=93.89  E-value=0.13  Score=45.06  Aligned_cols=42  Identities=24%  Similarity=0.195  Sum_probs=32.7

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEE-EecCCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVA-IDADVG   90 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vll-iD~D~~   90 (340)
                      ....+|++. +..|+||||++..|+..+...+..+.+ +.+|..
T Consensus        31 ~~~~iigi~-G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~   73 (229)
T PRK09270         31 QRRTIVGIA-GPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGF   73 (229)
T ss_pred             CCCEEEEEE-CCCCCCHHHHHHHHHHHhhhccCCceEEEecccc
Confidence            445666666 888999999999999999987666655 777653

>PRK08840 replicative DNA helicase; Provisional

Probab=93.88  E-value=0.097  Score=50.92  Aligned_cols=40  Identities=20%  Similarity=0.228  Sum_probs=34.9

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEecCCC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLAR-LGFSVVAIDADVG   90 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~-~g~~VlliD~D~~   90 (340)
                      .-+.|.++..|+|||++|.|+|...|. .|++|+++.+...
T Consensus       217 g~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs  257 (464)
T PRK08840        217 SDLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMP  257 (464)
T ss_pred             CceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCC
Confidence            456677799999999999999999984 5999999999876

>PRK05642 DNA replication initiation factor; Validated

Probab=93.82  E-value=0.088  Score=46.35  Aligned_cols=35  Identities=23%  Similarity=0.271  Sum_probs=30.4

Q ss_pred             EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           55 ITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        55 v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      +..+..|+|||.++..++..+.++|.+|++++++.
T Consensus        49 ~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~   83 (234)
T PRK05642         49 YLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAE   83 (234)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHH
Confidence            44488899999999999999988899999998763

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=93.82  E-value=0.083  Score=47.53  Aligned_cols=34  Identities=35%  Similarity=0.352  Sum_probs=25.8

Q ss_pred             EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           55 ITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        55 v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      +..|-.|+||||+|..|+..+.+.+.+|.+++-|
T Consensus         5 il~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~   38 (270)
T PF08433_consen    5 ILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDD   38 (270)
T ss_dssp             EEE--TTSSHHHHHHHHHHHHHHTT--EEEE-TH
T ss_pred             EEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEccc
Confidence            4448899999999999999999999999999844

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>PRK05748 replicative DNA helicase; Provisional

Probab=93.78  E-value=0.097  Score=50.79  Aligned_cols=42  Identities=21%  Similarity=0.343  Sum_probs=35.3

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEecCCCCC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLAR-LGFSVVAIDADVGLR   92 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~-~g~~VlliD~D~~~~   92 (340)
                      .-+.+.++..|+|||+++.++|...+. .|.+|+++.+.....
T Consensus       203 G~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~  245 (448)
T PRK05748        203 NDLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAE  245 (448)
T ss_pred             CceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHH
Confidence            346666799999999999999999884 599999999987633

>PRK06835 DNA replication protein DnaC; Validated

Probab=93.77  E-value=0.086  Score=48.85  Aligned_cols=37  Identities=30%  Similarity=0.348  Sum_probs=31.9

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      +-+.++ +..|+|||.+|..+|..+.++|++|+.+.++
T Consensus       184 ~~Lll~-G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~  220 (329)
T PRK06835        184 ENLLFY-GNTGTGKTFLSNCIAKELLDRGKSVIYRTAD  220 (329)
T ss_pred             CcEEEE-CCCCCcHHHHHHHHHHHHHHCCCeEEEEEHH
Confidence            456666 5779999999999999999999999998764

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=93.77  E-value=0.16  Score=46.16  Aligned_cols=43  Identities=33%  Similarity=0.344  Sum_probs=33.5

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC--CCcEEEEecCCCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARL--GFSVVAIDADVGL   91 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~--g~~VlliD~D~~~   91 (340)
                      +...+|+|. +..|+||||+|..|...+.+.  +.+|.++.+|...
T Consensus        60 ~~p~IIGIa-G~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~  104 (290)
T TIGR00554        60 KIPYIISIA-GSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL  104 (290)
T ss_pred             CCCEEEEEE-CCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence            445677777 677899999999999888854  4479999888653

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PRK06904 replicative DNA helicase; Validated

Probab=93.75  E-value=0.099  Score=50.97  Aligned_cols=41  Identities=20%  Similarity=0.209  Sum_probs=35.1

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEecCCCC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLAR-LGFSVVAIDADVGL   91 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~-~g~~VlliD~D~~~   91 (340)
                      .-+.|.++..|+|||+++.|+|...|. .|.+|+++-+....
T Consensus       221 G~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~  262 (472)
T PRK06904        221 SDLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPA  262 (472)
T ss_pred             CcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCH
Confidence            346677799999999999999999885 59999999998763

>PRK08727 hypothetical protein; Validated

Probab=93.74  E-value=0.096  Score=46.08  Aligned_cols=36  Identities=19%  Similarity=0.265  Sum_probs=30.9

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      -+.++ +..|+|||.++..++..+.+.|++|.++.++
T Consensus        43 ~l~l~-G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~   78 (233)
T PRK08727         43 WLYLS-GPAGTGKTHLALALCAAAEQAGRSSAYLPLQ   78 (233)
T ss_pred             eEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEEeHH
Confidence            35555 7799999999999999999999999999764

>PRK08939 primosomal protein DnaI; Reviewed

Probab=93.74  E-value=0.1  Score=47.89  Aligned_cols=38  Identities=26%  Similarity=0.306  Sum_probs=32.1

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      .+-+.++ +.-|+|||.++..+|..++++|++|.++.+.
T Consensus       156 ~~gl~L~-G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~  193 (306)
T PRK08939        156 VKGLYLY-GDFGVGKSYLLAAIANELAKKGVSSTLLHFP  193 (306)
T ss_pred             CCeEEEE-CCCCCCHHHHHHHHHHHHHHcCCCEEEEEHH
Confidence            3456666 6789999999999999999999999998664

>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]

Probab=93.71  E-value=0.11  Score=53.49  Aligned_cols=36  Identities=31%  Similarity=0.280  Sum_probs=30.3

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      .+..=+-.|+||||+-+.|-..|...|++|||.-..
T Consensus       687 y~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyT  722 (1100)
T KOG1805|consen  687 YALILGMPGTGKTTTISLLIKILVALGKKVLLTSYT  722 (1100)
T ss_pred             hheeecCCCCCchhhHHHHHHHHHHcCCeEEEEehh
Confidence            334447789999999999999999999999997543

>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]

Probab=93.71  E-value=0.31  Score=44.41  Aligned_cols=43  Identities=30%  Similarity=0.399  Sum_probs=33.0

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHH----CC------CcEEEEecCCCCCCc
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLAR----LG------FSVVAIDADVGLRNL   94 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~----~g------~~VlliD~D~~~~~l   94 (340)
                      +..+..+-||+||||++..|..+|+.    -|      .+|++|.+.....++
T Consensus        90 ~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~  142 (402)
T COG3598          90 YVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDI  142 (402)
T ss_pred             eeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHH
Confidence            45666699999999999999999884    14      378888887664444

>PF13173 AAA_14: AAA domain

Probab=93.70  E-value=0.11  Score=40.91  Aligned_cols=38  Identities=29%  Similarity=0.424  Sum_probs=30.4

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      +++.+. +--||||||++.+++..+. ...+++.+|+|..
T Consensus         3 ~~~~l~-G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~   40 (128)
T PF13173_consen    3 KIIILT-GPRGVGKTTLLKQLAKDLL-PPENILYINFDDP   40 (128)
T ss_pred             CeEEEE-CCCCCCHHHHHHHHHHHhc-ccccceeeccCCH
Confidence            566666 5568999999999998877 5668999999864

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=93.68  E-value=1.2  Score=42.72  Aligned_cols=64  Identities=23%  Similarity=0.282  Sum_probs=41.9

Q ss_pred             CCEEEEcCCCCCC---------H----HHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          167 PDFILIDCPAGID---------A----GFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~~---------~----~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      ..++++|||+...         .    .....+..||.+++|++........-.++.+.+...+ ..+.+|+|+++-.
T Consensus       220 ~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~-~~iiiv~NK~Dl~  296 (429)
T TIGR03594       220 KKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAG-KALVIVVNKWDLV  296 (429)
T ss_pred             cEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcC-CcEEEEEECcccC
Confidence            4688999998321         1    1134567899999999886543334445555555544 4577999999864

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=93.67  E-value=0.14  Score=48.63  Aligned_cols=41  Identities=22%  Similarity=0.228  Sum_probs=33.6

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      .+-+|+|. +..|+||||++..|...+...|.++..|..|-.
T Consensus       211 ~PlIIGIs-G~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDf  251 (460)
T PLN03046        211 PPLVIGFS-APQGCGKTTLVFALDYLFRVTGRKSATLSIDDF  251 (460)
T ss_pred             CCEEEEEE-CCCCCCHHHHHHHHHHHhcccCCceEEEEECCc
Confidence            44566666 677899999999999888877889999988865

>PRK09866 hypothetical protein; Provisional

Probab=93.62  E-value=0.36  Score=48.30  Aligned_cols=67  Identities=13%  Similarity=0.136  Sum_probs=46.2

Q ss_pred             CCCCEEEEcCCCCCC---H----HHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCC-CceEEEEecccCC
Q 047623          165 GSPDFILIDCPAGID---A----GFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGI-RDIKMVVNRVRTD  231 (340)
Q Consensus       165 ~~~D~VIiD~~~~~~---~----~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~-~~~~vviN~~~~~  231 (340)
                      ..+.+|++|||+-..   .    .+...+..||.|+.+++....--..-..+.+.+...+. ..+.+|+|+++..
T Consensus       228 ~~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~  302 (741)
T PRK09866        228 YPGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQ  302 (741)
T ss_pred             ccCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCC
Confidence            358899999999432   1    34556788999999999865322223456666666543 3688999999964

>COG4240 Predicted kinase [General function prediction only]

Probab=93.57  E-value=0.13  Score=44.59  Aligned_cols=40  Identities=30%  Similarity=0.255  Sum_probs=32.9

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCC-CcEEEEecCCC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLG-FSVVAIDADVG   90 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g-~~VlliD~D~~   90 (340)
                      ..|...++-.|+||||+++.+-..|+++| .+|+-+.+|--
T Consensus        50 Pli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDl   90 (300)
T COG4240          50 PLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDL   90 (300)
T ss_pred             ceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhh
Confidence            34444457788999999999999999997 69999988853

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=93.53  E-value=0.11  Score=44.94  Aligned_cols=42  Identities=29%  Similarity=0.343  Sum_probs=32.6

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRN   93 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~   93 (340)
                      ...+|+|. +-+|+||||+|..|...|...  ++.+|..|.-.-+
T Consensus         7 ~~iiIgIa-G~SgSGKTTva~~l~~~~~~~--~~~~I~~D~YYk~   48 (218)
T COG0572           7 KVIIIGIA-GGSGSGKTTVAKELSEQLGVE--KVVVISLDDYYKD   48 (218)
T ss_pred             ceEEEEEe-CCCCCCHHHHHHHHHHHhCcC--cceEeeccccccc
Confidence            44678887 566889999999999988754  8888888865443

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=93.51  E-value=0.18  Score=50.27  Aligned_cols=43  Identities=30%  Similarity=0.367  Sum_probs=35.1

Q ss_pred             CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEecCCC
Q 047623           47 GETPRVVVITSGKGGVGKTTTTANVGLSLAR-LGFSVVAIDADVG   90 (340)
Q Consensus        47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~-~g~~VlliD~D~~   90 (340)
                      .+.+.+|.++ +-.|+||||+|..||..|.. .|.++.++|.|.-
T Consensus       389 ~~~g~~Ivl~-Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~v  432 (568)
T PRK05537        389 HKQGFTVFFT-GLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVV  432 (568)
T ss_pred             cCCCeEEEEE-CCCCChHHHHHHHHHHHhhhccCceEEEeCCcHH
Confidence            3445566665 88899999999999999987 7888999998853

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=93.51  E-value=0.28  Score=44.21  Aligned_cols=42  Identities=36%  Similarity=0.495  Sum_probs=30.1

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC-CC-cEEEEecCCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARL-GF-SVVAIDADVG   90 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~-g~-~VlliD~D~~   90 (340)
                      +..++|+++ +-||+||||+|..++.....+ .+ .+.-+++...
T Consensus        17 ~~~~~v~I~-G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~   60 (287)
T PF00931_consen   17 NEVRVVAIV-GMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKN   60 (287)
T ss_dssp             TSSEEEEEE-ESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-
T ss_pred             CCeEEEEEE-cCCcCCcceeeeecccccccccccccccccccccc
Confidence            556788887 788899999999999775533 22 4666666644

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PRK06321 replicative DNA helicase; Provisional

Probab=93.44  E-value=0.13  Score=50.19  Aligned_cols=39  Identities=15%  Similarity=0.261  Sum_probs=34.1

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEecCCC
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLA-RLGFSVVAIDADVG   90 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la-~~g~~VlliD~D~~   90 (340)
                      -+.|.++..|+|||+++.++|..+| +.|++|+++.+...
T Consensus       227 ~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs  266 (472)
T PRK06321        227 NLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMT  266 (472)
T ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence            4666779999999999999999998 45999999998876

>PRK08118 topology modulation protein; Reviewed

Probab=93.43  E-value=0.088  Score=43.76  Aligned_cols=24  Identities=33%  Similarity=0.711  Sum_probs=18.8

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHH
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSL   75 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~l   75 (340)
                      +.|.|. +-+|+||||+|..|+..+
T Consensus         2 ~rI~I~-G~~GsGKSTlak~L~~~l   25 (167)
T PRK08118          2 KKIILI-GSGGSGKSTLARQLGEKL   25 (167)
T ss_pred             cEEEEE-CCCCCCHHHHHHHHHHHh
Confidence            346666 678999999999888764

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=93.42  E-value=0.12  Score=44.31  Aligned_cols=34  Identities=47%  Similarity=0.617  Sum_probs=26.0

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      |+.+|+++ ++-|+||||+|-    .+++.|.+|  ||+|.
T Consensus         1 ~~~iIglT-G~igsGKStva~----~~~~~G~~v--idaD~   34 (201)
T COG0237           1 MMLIIGLT-GGIGSGKSTVAK----ILAELGFPV--IDADD   34 (201)
T ss_pred             CceEEEEe-cCCCCCHHHHHH----HHHHcCCeE--EEccH
Confidence            57899999 788999999874    455566666  67774

>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6

Probab=93.42  E-value=0.14  Score=49.91  Aligned_cols=52  Identities=29%  Similarity=0.443  Sum_probs=36.1

Q ss_pred             CCCCEEEEEEcC---CCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCc
Q 047623           47 GETPRVVVITSG---KGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLE  101 (340)
Q Consensus        47 ~~~~~iI~v~s~---kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~  101 (340)
                      .+.+|.|.|++-   .-|.||||++..|+..|++.|+++.+.   .+.|++.-.||++
T Consensus        51 ~~~gklilVTaitPTp~GEGKtTttiGL~~al~~lg~~~~~~---lRePSlGP~fG~K  105 (557)
T PF01268_consen   51 KPDGKLILVTAITPTPAGEGKTTTTIGLAQALNRLGKKAIAA---LREPSLGPVFGIK  105 (557)
T ss_dssp             S---EEEEEEESS--TTS-SHHHHHHHHHHHHHHTT--EEEE---E----CHHHHCST
T ss_pred             cCCCcEEEEEecCCCCCCCCceeHHHHHHHHHHhcCCceEEE---EecCCCCCccCcc
Confidence            467899988875   459999999999999999999998875   4458888888877

3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....

>PRK06893 DNA replication initiation factor; Validated

Probab=93.34  E-value=0.13  Score=45.11  Aligned_cols=37  Identities=16%  Similarity=0.050  Sum_probs=31.5

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      +.+.++ +..|+|||.++..+|..+.++|.+|.+++++
T Consensus        40 ~~l~l~-G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~   76 (229)
T PRK06893         40 PFFYIW-GGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS   76 (229)
T ss_pred             CeEEEE-CCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence            344444 8889999999999999999999999999885

>PRK08116 hypothetical protein; Validated

Probab=93.25  E-value=0.12  Score=46.40  Aligned_cols=36  Identities=25%  Similarity=0.333  Sum_probs=30.3

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      -+.++ +..|+|||.+|..+|..+.++|.+|+++++.
T Consensus       116 gl~l~-G~~GtGKThLa~aia~~l~~~~~~v~~~~~~  151 (268)
T PRK08116        116 GLLLW-GSVGTGKTYLAACIANELIEKGVPVIFVNFP  151 (268)
T ss_pred             eEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence            34444 6789999999999999999889999998753

>PRK13949 shikimate kinase; Provisional

Probab=93.24  E-value=0.55  Score=39.05  Aligned_cols=32  Identities=31%  Similarity=0.402  Sum_probs=23.0

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      +.|.+. +-.|+||||++..||..+.   .  -.+|+|
T Consensus         2 ~~I~li-G~~GsGKstl~~~La~~l~---~--~~id~D   33 (169)
T PRK13949          2 ARIFLV-GYMGAGKTTLGKALARELG---L--SFIDLD   33 (169)
T ss_pred             cEEEEE-CCCCCCHHHHHHHHHHHcC---C--Ceeccc
Confidence            345565 6678999999999998763   2  346666

>PRK00131 aroK shikimate kinase; Reviewed

Probab=93.23  E-value=0.11  Score=42.96  Aligned_cols=33  Identities=33%  Similarity=0.440  Sum_probs=24.2

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      ++.|.++ +..|+||||+|..||..+   |.  .++|.|
T Consensus         4 ~~~i~l~-G~~GsGKstla~~La~~l---~~--~~~d~d   36 (175)
T PRK00131          4 GPNIVLI-GFMGAGKSTIGRLLAKRL---GY--DFIDTD   36 (175)
T ss_pred             CCeEEEE-cCCCCCHHHHHHHHHHHh---CC--CEEECh
Confidence            3455555 789999999999999987   33  445665

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=93.22  E-value=0.2  Score=47.95  Aligned_cols=66  Identities=24%  Similarity=0.322  Sum_probs=49.0

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      ++.+.|+|||+...  ..+...+..+|.+++|+.....-.....+....+...+.+.+.+++|+.+..
T Consensus        79 ~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~  146 (406)
T TIGR02034        79 KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLV  146 (406)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccc
Confidence            46889999999542  2345567889999999998755445555666666666777788999999864

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PRK08181 transposase; Validated

Probab=93.18  E-value=0.12  Score=46.50  Aligned_cols=35  Identities=29%  Similarity=0.478  Sum_probs=29.9

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEec
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDA   87 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~   87 (340)
                      -+.++ +..|+|||.++..+|..+.++|++|..+.+
T Consensus       108 nlll~-Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~  142 (269)
T PRK08181        108 NLLLF-GPPGGGKSHLAAAIGLALIENGWRVLFTRT  142 (269)
T ss_pred             eEEEE-ecCCCcHHHHHHHHHHHHHHcCCceeeeeH
Confidence            34444 788999999999999999999999998865

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=93.11  E-value=0.18  Score=38.46  Aligned_cols=22  Identities=27%  Similarity=0.457  Sum_probs=18.9

Q ss_pred             cCCCCCcHHHHHHHHHHHHHHC
Q 047623           57 SGKGGVGKTTTTANVGLSLARL   78 (340)
Q Consensus        57 s~kGGvGKTt~a~~LA~~la~~   78 (340)
                      .+..|+|||++|..||..+.+.
T Consensus         4 ~G~~G~GKS~l~~~l~~~l~~~   25 (107)
T PF00910_consen    4 YGPPGIGKSTLAKELAKDLLKH   25 (107)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHH
Confidence            3666999999999999999864

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=93.11  E-value=0.38  Score=47.05  Aligned_cols=155  Identities=19%  Similarity=0.241  Sum_probs=80.1

Q ss_pred             CCCCCEEEEEEcCCCCCcHHHHHH--HHHHHHHHCCC----cEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccc
Q 047623           46 AGETPRVVVITSGKGGVGKTTTTA--NVGLSLARLGF----SVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLD  119 (340)
Q Consensus        46 ~~~~~~iI~v~s~kGGvGKTt~a~--~LA~~la~~g~----~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~  119 (340)
                      .....+.+..-+++||-|...++.  +-|-.+|+.|.    +.+.+++-.-  .--.+.|..+.-..+|...+.+....-
T Consensus       109 ~~~g~~~~~a~GG~GG~Gn~~f~~~~~~~p~~~~~G~~Ge~~~~~leLk~~--adV~LVG~PNAGKSTLln~Ls~akpkI  186 (500)
T PRK12296        109 VGAGTRFVAAAGGRGGLGNAALASKARKAPGFALLGEPGEERDLVLELKSV--ADVGLVGFPSAGKSSLISALSAAKPKI  186 (500)
T ss_pred             ccCCCEEEEEccCCCcCCCcccCCccCCCCccccCCCCCceEEEEEEeccc--ceEEEEEcCCCCHHHHHHHHhcCCccc
Confidence            345568899999999999976653  33444555443    2333333322  112334555544455666665432110


Q ss_pred             cceecccccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCC---------HHHHHHHhcCC
Q 047623          120 QALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGID---------AGFITAITPAN  190 (340)
Q Consensus       120 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~---------~~~~~~l~~ad  190 (340)
                      ......+..+++.++-                            ...+.++|+|+|+-..         ......+..||
T Consensus       187 adypfTTl~P~lGvv~----------------------------~~~~~f~laDtPGliegas~g~gLg~~fLrhierad  238 (500)
T PRK12296        187 ADYPFTTLVPNLGVVQ----------------------------AGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERCA  238 (500)
T ss_pred             cccCcccccceEEEEE----------------------------ECCeEEEEEECCCCccccchhhHHHHHHHHHHHhcC
Confidence            0000011112221110                            1246789999999431         12233456799


Q ss_pred             eEEEEeCCCh-----hhHHHHHHHHHHHHhc-------------CCCceEEEEecccC
Q 047623          191 EAVLVTTPDI-----TSLRDADRVTGLLECD-------------GIRDIKMVVNRVRT  230 (340)
Q Consensus       191 ~viiv~~~~~-----~s~~~~~~~~~~l~~~-------------~~~~~~vviN~~~~  230 (340)
                      .++.|++.+.     ..+.....+.+.+..+             ......+|+|+++-
T Consensus       239 vLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL  296 (500)
T PRK12296        239 VLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDV  296 (500)
T ss_pred             EEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccc
Confidence            9999988752     2333333333333321             12457799999875

>PTZ00301 uridine kinase; Provisional

Probab=93.09  E-value=0.19  Score=43.43  Aligned_cols=39  Identities=31%  Similarity=0.371  Sum_probs=28.9

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHC-CC-cEEEEecCCC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARL-GF-SVVAIDADVG   90 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~-g~-~VlliD~D~~   90 (340)
                      .+|+|. +-+|+||||+|..|+..+.+. |- .|+++-.|..
T Consensus         4 ~iIgIa-G~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~y   44 (210)
T PTZ00301          4 TVIGIS-GASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFY   44 (210)
T ss_pred             EEEEEE-CCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCC
Confidence            677777 667889999999999887543 43 4667777754

>PLN02796 D-glycerate 3-kinase

Probab=93.06  E-value=0.18  Score=46.82  Aligned_cols=41  Identities=24%  Similarity=0.249  Sum_probs=32.9

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      ..-+|+|. +..|+||||++..|+..+...|.++..|-.|-.
T Consensus        99 ~pliIGI~-G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdf  139 (347)
T PLN02796         99 PPLVIGIS-APQGCGKTTLVFALVYLFNATGRRAASLSIDDF  139 (347)
T ss_pred             CCEEEEEE-CCCCCcHHHHHHHHHHHhcccCCceeEEEECCc
Confidence            34566666 778999999999999999887888888877744

>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2

Probab=93.03  E-value=0.32  Score=40.51  Aligned_cols=30  Identities=30%  Similarity=0.375  Sum_probs=23.3

Q ss_pred             CCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           59 KGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        59 kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      .-|=||||.|..+|...+-+|+||+++-+=
T Consensus        11 G~GKGKTTAAlGlalRA~G~G~rV~ivQFl   40 (172)
T PF02572_consen   11 GDGKGKTTAALGLALRAAGHGMRVLIVQFL   40 (172)
T ss_dssp             SSSS-HHHHHHHHHHHHHCTT--EEEEESS
T ss_pred             CCCCCchHHHHHHHHHHHhCCCEEEEEEEe
Confidence            346699999999999999999999998664

5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.

>cd01882 BMS1 Bms1

Probab=92.96  E-value=0.46  Score=41.54  Aligned_cols=63  Identities=16%  Similarity=0.293  Sum_probs=46.5

Q ss_pred             CCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccC
Q 047623          167 PDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRT  230 (340)
Q Consensus       167 ~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~  230 (340)
                      ..++++|||+.. ......+..+|.++++++...........+.+.+...+.+.+.+|+|+.+.
T Consensus        83 ~~i~~vDtPg~~-~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~  145 (225)
T cd01882          83 RRLTFIECPNDI-NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDL  145 (225)
T ss_pred             ceEEEEeCCchH-HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEecccc
Confidence            567899999765 344556788999999998765444445667777777777666679999986

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>cd00154 Rab Rab family

Probab=92.95  E-value=0.78  Score=36.52  Aligned_cols=66  Identities=17%  Similarity=0.073  Sum_probs=48.1

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCCh-hhHHHHHHHHHHHHhcC--CCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPDI-TSLRDADRVTGLLECDG--IRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~~  231 (340)
                      .+++.++|+|+..  .......+..+|.+++++..+. .+...+..++..+....  ...+.+|+|+.+..
T Consensus        48 ~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  118 (159)
T cd00154          48 TVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLE  118 (159)
T ss_pred             EEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc
Confidence            4788999999854  2344556778999999988854 55777777777776544  35678999998764

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>PRK07933 thymidylate kinase; Validated

Probab=92.94  E-value=0.2  Score=43.44  Aligned_cols=36  Identities=31%  Similarity=0.415  Sum_probs=30.6

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      .|+|- +--|+||||.+..|+.+|..+|.+|.++...
T Consensus         2 ~IviE-G~dGsGKST~~~~L~~~L~~~g~~v~~~~~P   37 (213)
T PRK07933          2 LIAIE-GVDGAGKRTLTEALRAALEARGRSVATLAFP   37 (213)
T ss_pred             EEEEE-cCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            45555 5568999999999999999999999998764

>PRK05636 replicative DNA helicase; Provisional

Probab=92.88  E-value=0.17  Score=49.77  Aligned_cols=40  Identities=20%  Similarity=0.294  Sum_probs=34.3

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEecCCC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLA-RLGFSVVAIDADVG   90 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la-~~g~~VlliD~D~~   90 (340)
                      .-+.+.++..|+|||++|.++|...+ +.|++|+++.+...
T Consensus       265 G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs  305 (505)
T PRK05636        265 GQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMS  305 (505)
T ss_pred             CceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCC
Confidence            44666779999999999999999888 45899999988876

>PF12846 AAA_10: AAA-like domain

Probab=92.85  E-value=0.17  Score=45.77  Aligned_cols=33  Identities=42%  Similarity=0.428  Sum_probs=29.6

Q ss_pred             CCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           58 GKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        58 ~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      ++.|+||||++.++...+...|..++++|....
T Consensus         8 G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~g~   40 (304)
T PF12846_consen    8 GKTGSGKTTLLKNLLEQLIRRGPRVVIFDPKGD   40 (304)
T ss_pred             CCCCCcHHHHHHHHHHHHHHcCCCEEEEcCCch
Confidence            788999999999999999999999999976633

>PRK06547 hypothetical protein; Provisional

Probab=92.84  E-value=0.16  Score=42.52  Aligned_cols=36  Identities=28%  Similarity=0.370  Sum_probs=26.2

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      ..+.+|+|. +..|+||||+|..||..+   |  +.++++|.
T Consensus        13 ~~~~~i~i~-G~~GsGKTt~a~~l~~~~---~--~~~~~~d~   48 (172)
T PRK06547         13 GGMITVLID-GRSGSGKTTLAGALAART---G--FQLVHLDD   48 (172)
T ss_pred             CCCEEEEEE-CCCCCCHHHHHHHHHHHh---C--CCeecccc
Confidence            455677777 688999999999998863   3  44556664

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=92.81  E-value=0.18  Score=51.25  Aligned_cols=43  Identities=35%  Similarity=0.432  Sum_probs=36.0

Q ss_pred             CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      +.++++|.++ +..|+||||+|..|+..|...|..+.++|.|.-
T Consensus       457 ~~~~~~i~~~-G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~  499 (632)
T PRK05506        457 GQKPATVWFT-GLSGSGKSTIANLVERRLHALGRHTYLLDGDNV  499 (632)
T ss_pred             CCCcEEEEec-CCCCchHHHHHHHHHHHHHHcCCCEEEEcChhh
Confidence            3445666665 788999999999999999988999999999864

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=92.80  E-value=0.41  Score=43.31  Aligned_cols=35  Identities=31%  Similarity=0.368  Sum_probs=24.4

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      ..--|+|. +-..+||||++-++-      |.+|..+....+
T Consensus        71 k~L~vavI-G~PNvGKStLtN~mi------g~kv~~vS~K~~  105 (379)
T KOG1423|consen   71 KSLYVAVI-GAPNVGKSTLTNQMI------GQKVSAVSRKVH  105 (379)
T ss_pred             eEEEEEEE-cCCCcchhhhhhHhh------CCcccccccccc
Confidence            33446666 678999999997653      678877655544

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=92.74  E-value=0.26  Score=40.47  Aligned_cols=63  Identities=11%  Similarity=0.057  Sum_probs=41.0

Q ss_pred             CCCEEEEcCCCCC------CHHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecc
Q 047623          166 SPDFILIDCPAGI------DAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRV  228 (340)
Q Consensus       166 ~~D~VIiD~~~~~------~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~  228 (340)
                      ..+++|||+|+-.      ...+...+..+|.++.|+.+.......-...+.........+..+|+|++
T Consensus       100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~  168 (168)
T PF00350_consen  100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA  168 (168)
T ss_dssp             SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred             ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence            4789999999832      24566677889999999988774443333333333333445677888874

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=92.73  E-value=2.2  Score=39.14  Aligned_cols=66  Identities=18%  Similarity=0.245  Sum_probs=35.7

Q ss_pred             CCCEEEEcCCCCCCHH-----HHHHHh------cCCeEEEEeCCChhhHHHH-HHHHHHHHhc-C---CCceEEEEeccc
Q 047623          166 SPDFILIDCPAGIDAG-----FITAIT------PANEAVLVTTPDITSLRDA-DRVTGLLECD-G---IRDIKMVVNRVR  229 (340)
Q Consensus       166 ~~D~VIiD~~~~~~~~-----~~~~l~------~ad~viiv~~~~~~s~~~~-~~~~~~l~~~-~---~~~~~vviN~~~  229 (340)
                      .+.+.|||||+-.+..     ....+.      ..|.+++|...+...+... ..+++.+... |   .....+++++.+
T Consensus        85 G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d  164 (313)
T TIGR00991        85 GFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQ  164 (313)
T ss_pred             CeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCc
Confidence            4678899998854321     112222      3788888866543322211 2333333321 1   256778889887


Q ss_pred             CC
Q 047623          230 TD  231 (340)
Q Consensus       230 ~~  231 (340)
                      ..
T Consensus       165 ~~  166 (313)
T TIGR00991       165 FS  166 (313)
T ss_pred             cC
Confidence            43

>PF05729 NACHT: NACHT domain

Probab=92.69  E-value=0.14  Score=41.71  Aligned_cols=27  Identities=33%  Similarity=0.400  Sum_probs=22.9

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHCC
Q 047623           53 VVITSGKGGVGKTTTTANVGLSLARLG   79 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~la~~g   79 (340)
                      +.+..+.+|+||||++..++..+++.+
T Consensus         2 ~l~I~G~~G~GKStll~~~~~~~~~~~   28 (166)
T PF05729_consen    2 VLWISGEPGSGKSTLLRKLAQQLAEEE   28 (166)
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHhcC
Confidence            345558999999999999999999864

>PRK07004 replicative DNA helicase; Provisional

Probab=92.65  E-value=0.18  Score=49.13  Aligned_cols=40  Identities=25%  Similarity=0.463  Sum_probs=34.5

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEecCCC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLAR-LGFSVVAIDADVG   90 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~-~g~~VlliD~D~~   90 (340)
                      .-+.|.++..|+|||+++.++|..+|. .|++|+++-+...
T Consensus       213 g~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~  253 (460)
T PRK07004        213 GELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMP  253 (460)
T ss_pred             CceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence            346677799999999999999999884 6999999998876

>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]

Probab=92.61  E-value=0.21  Score=42.31  Aligned_cols=42  Identities=19%  Similarity=0.188  Sum_probs=29.0

Q ss_pred             ccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHHH
Q 047623          163 QEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDAD  207 (340)
Q Consensus       163 ~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~  207 (340)
                      .-..|.|||+|.|=-+..   ..+..+..+++|+.+....++.+.
T Consensus       103 ~l~G~r~ivlDiPLLFE~---~~~~~~~~tvvV~cd~~~Ql~Rl~  144 (225)
T KOG3220|consen  103 LLRGYRVIVLDIPLLFEA---KLLKICHKTVVVTCDEELQLERLV  144 (225)
T ss_pred             HhcCCeEEEEechHHHHH---hHHhheeeEEEEEECcHHHHHHHH
Confidence            345899999999753322   355668888888887766665543

>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]

Probab=92.55  E-value=0.56  Score=39.40  Aligned_cols=31  Identities=26%  Similarity=0.277  Sum_probs=26.6

Q ss_pred             CCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           58 GKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        58 ~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      +.-|=||||.|..+|.-..-+|+||+++-+=
T Consensus        35 TG~GKGKTTAAlG~alRa~GhG~rv~vvQFi   65 (198)
T COG2109          35 TGNGKGKTTAALGLALRALGHGLRVGVVQFI   65 (198)
T ss_pred             ecCCCChhHHHHHHHHHHhcCCCEEEEEEEe
Confidence            4457799999999999999999999998663

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=92.52  E-value=0.19  Score=43.47  Aligned_cols=35  Identities=31%  Similarity=0.473  Sum_probs=25.8

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHH--------HHCCCcEEEEec
Q 047623           53 VVITSGKGGVGKTTTTANVGLSL--------ARLGFSVVAIDA   87 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~l--------a~~g~~VlliD~   87 (340)
                      +++..+-.|+|||++.++++..+        ...+.+++++--
T Consensus        19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~   61 (236)
T PF13086_consen   19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSP   61 (236)
T ss_dssp             -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEES
T ss_pred             CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecC
Confidence            67777888999999999999998        455778887643

>PRK06921 hypothetical protein; Provisional

Probab=92.51  E-value=0.19  Score=45.16  Aligned_cols=37  Identities=24%  Similarity=0.335  Sum_probs=31.1

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEec
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARL-GFSVVAIDA   87 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~-g~~VlliD~   87 (340)
                      ..-+.++ +..|+|||.++..+|..+.++ |++|+.+.+
T Consensus       117 ~~~l~l~-G~~G~GKThLa~aia~~l~~~~g~~v~y~~~  154 (266)
T PRK06921        117 KNSIALL-GQPGSGKTHLLTAAANELMRKKGVPVLYFPF  154 (266)
T ss_pred             CCeEEEE-CCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence            3456666 677999999999999999988 999998875

>PRK13507 formate--tetrahydrofolate ligase; Provisional

Probab=92.48  E-value=0.21  Score=48.68  Aligned_cols=52  Identities=19%  Similarity=0.178  Sum_probs=41.7

Q ss_pred             CCCCEEEEEEcCC---CCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCc
Q 047623           47 GETPRVVVITSGK---GGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLE  101 (340)
Q Consensus        47 ~~~~~iI~v~s~k---GGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~  101 (340)
                      .+.+|.|.|++-.   -|.||||++..|+..|.+.|+++++.   .+.|++.-.||++
T Consensus        60 ~~~gklIlVTaitPTP~GEGKtTttIGL~~aL~~lgk~~~~~---lRePSlGP~FGiK  114 (587)
T PRK13507         60 RPDGKYIDVTAITPTPLGEGKSTTTMGLVQGLGKRGKKVSGA---IRQPSGGPTMNIK  114 (587)
T ss_pred             CCCCeEEEEeccCCCCCCCCccchhhhHHHHHHhhcCceEEE---EecCCcCCcCCcc
Confidence            4567888888754   59999999999999999999998876   3447777777665

>TIGR02239 recomb_RAD51 DNA repair protein RAD51

Probab=92.48  E-value=0.44  Score=43.96  Aligned_cols=40  Identities=20%  Similarity=0.184  Sum_probs=29.4

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHH---CC---CcEEEEecCCC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLAR---LG---FSVVAIDADVG   90 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~---~g---~~VlliD~D~~   90 (340)
                      +.++.+. +..|+|||+++.+++.....   .|   .+|++||....
T Consensus        96 g~i~~i~-G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~  141 (316)
T TIGR02239        96 GSITEIF-GEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGT  141 (316)
T ss_pred             CeEEEEE-CCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCC
Confidence            4455554 79999999999999874332   33   48999999864

This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).

>PRK08084 DNA replication initiation factor; Provisional

Probab=92.41  E-value=0.2  Score=44.17  Aligned_cols=37  Identities=16%  Similarity=0.221  Sum_probs=31.6

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      .+.+ .+..|+|||+++..++..+.+.|.+|.++.++.
T Consensus        47 ~l~l-~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~   83 (235)
T PRK08084         47 YIYL-WSREGAGRSHLLHAACAELSQRGRAVGYVPLDK   83 (235)
T ss_pred             eEEE-ECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence            4444 478899999999999999998899999998874

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=92.25  E-value=0.15  Score=43.23  Aligned_cols=32  Identities=31%  Similarity=0.289  Sum_probs=24.6

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      |+|. +..|+||||+|..|+..+.    .+.+|..|.
T Consensus         2 i~i~-G~sgsGKTtla~~l~~~~~----~~~~i~~Dd   33 (187)
T cd02024           2 VGIS-GVTNSGKTTLAKLLQRILP----NCCVIHQDD   33 (187)
T ss_pred             EEEE-CCCCCCHHHHHHHHHHHcC----CCeEEcccc
Confidence            5555 7889999999999998862    466777774

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PRK00698 tmk thymidylate kinase; Validated

Probab=92.21  E-value=0.34  Score=41.30  Aligned_cols=35  Identities=29%  Similarity=0.314  Sum_probs=28.7

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEE
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAI   85 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vlli   85 (340)
                      +++|+|. +-.|+||||++..|+..+...|..+...
T Consensus         3 ~~~I~ie-G~~gsGKsT~~~~L~~~l~~~~~~~~~~   37 (205)
T PRK00698          3 GMFITIE-GIDGAGKSTQIELLKELLEQQGRDVVFT   37 (205)
T ss_pred             ceEEEEE-CCCCCCHHHHHHHHHHHHHHcCCceeEe
Confidence            4677777 6678999999999999999888776654

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=92.20  E-value=0.15  Score=39.93  Aligned_cols=38  Identities=24%  Similarity=0.327  Sum_probs=29.1

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHC-----CCcEEEEecCCC
Q 047623           53 VVITSGKGGVGKTTTTANVGLSLARL-----GFSVVAIDADVG   90 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~la~~-----g~~VlliD~D~~   90 (340)
                      +.+..+..|+|||+++.+++..+...     ..+++.+++...
T Consensus         6 ~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   48 (131)
T PF13401_consen    6 ILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSS   48 (131)
T ss_dssp             -EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHH
T ss_pred             ccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCC
Confidence            34444888999999999999998864     668888887765

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=92.20  E-value=0.93  Score=38.33  Aligned_cols=65  Identities=12%  Similarity=0.193  Sum_probs=44.8

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      .+.+.++|+|+...  ......+..+|.+++|+............++..+...+.+ +.+++|+++..
T Consensus        64 ~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~  130 (194)
T cd01891          64 DTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLK-PIVVINKIDRP  130 (194)
T ss_pred             CEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCC-EEEEEECCCCC
Confidence            47789999998543  3445567889999999988654334444445555544544 67899999864

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PLN02348 phosphoribulokinase

Probab=92.17  E-value=0.34  Score=45.75  Aligned_cols=42  Identities=17%  Similarity=0.144  Sum_probs=32.7

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCC---------------CcEEEEecCCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLG---------------FSVVAIDADVG   90 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g---------------~~VlliD~D~~   90 (340)
                      +...+|+|. +-.|+||||+|..|+..|...+               ..+.+|.+|-.
T Consensus        47 ~~p~IIGIa-G~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDY  103 (395)
T PLN02348         47 DGTVVIGLA-ADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDY  103 (395)
T ss_pred             CCCEEEEEE-CCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccc
Confidence            344677777 7788999999999999997542               46788888854

>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function

Probab=92.15  E-value=0.21  Score=46.83  Aligned_cols=38  Identities=26%  Similarity=0.399  Sum_probs=30.9

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHH--HHCCCcEEEEecCC
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSL--ARLGFSVVAIDADV   89 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~l--a~~g~~VlliD~D~   89 (340)
                      .+.+..+..|+|||.+|.++|..+  ...+.+++++-.+.
T Consensus         2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~   41 (352)
T PF09848_consen    2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNH   41 (352)
T ss_pred             eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecc
Confidence            456667899999999999999999  66777777776553

It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=92.15  E-value=0.24  Score=42.27  Aligned_cols=36  Identities=33%  Similarity=0.497  Sum_probs=27.9

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEec
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDA   87 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~   87 (340)
                      +++.+. +..|+||||+...++..+...|++|+++-.
T Consensus        19 ~~~~l~-G~aGtGKT~~l~~~~~~~~~~g~~v~~~ap   54 (196)
T PF13604_consen   19 RVSVLQ-GPAGTGKTTLLKALAEALEAAGKRVIGLAP   54 (196)
T ss_dssp             SEEEEE-ESTTSTHHHHHHHHHHHHHHTT--EEEEES
T ss_pred             eEEEEE-ECCCCCHHHHHHHHHHHHHhCCCeEEEECC
Confidence            455554 668999999999999999999999998743

>PLN02759 Formate--tetrahydrofolate ligase

Probab=92.07  E-value=0.3  Score=48.01  Aligned_cols=52  Identities=25%  Similarity=0.240  Sum_probs=41.1

Q ss_pred             CCCCEEEEEEcC---CCCCcHHHHHHHHHHHHHH-CCCcEEEEecCCCCCCchhccCCc
Q 047623           47 GETPRVVVITSG---KGGVGKTTTTANVGLSLAR-LGFSVVAIDADVGLRNLDLLLGLE  101 (340)
Q Consensus        47 ~~~~~iI~v~s~---kGGvGKTt~a~~LA~~la~-~g~~VlliD~D~~~~~l~~~~~~~  101 (340)
                      .+.+|.|.|++-   .-|.||||++..|+..|.+ .|+++++.   .+.|++.-.||++
T Consensus        66 ~~~gklIlVTaitPTP~GEGKTTttIGL~~aL~~~lgk~~~~~---lRePSlGP~FGiK  121 (637)
T PLN02759         66 APDGYYVVVAGITPTPLGEGKSTTTIGLCQALGAYLDKKVVTC---LRQPSQGPTFGIK  121 (637)
T ss_pred             CCCCcEEEEEecCCCCCCCCchhHHHHHHHHHHHHhCCeeEEE---eecCCcCCcCCcc
Confidence            456788888764   4599999999999999998 79999875   4447777677765

>cd01890 LepA LepA subfamily

Probab=92.04  E-value=1  Score=37.26  Aligned_cols=64  Identities=17%  Similarity=0.213  Sum_probs=40.4

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChh-hHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDIT-SLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      .+.+.++|+|+...  ......+..+|.++++.+.... +....... ..+...+. .+.+|+|+.+..
T Consensus        66 ~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~-~~~~~~~~-~iiiv~NK~Dl~  132 (179)
T cd01890          66 EYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANF-YLALENNL-EIIPVINKIDLP  132 (179)
T ss_pred             cEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHH-HHHHHcCC-CEEEEEECCCCC
Confidence            47889999998543  3445567889999999987542 22222222 22223333 477899999863

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>TIGR02236 recomb_radA DNA repair and recombination protein RadA

Probab=91.97  E-value=0.28  Score=45.09  Aligned_cols=40  Identities=25%  Similarity=0.339  Sum_probs=30.7

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHH------CCCcEEEEecCCC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLAR------LGFSVVAIDADVG   90 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~------~g~~VlliD~D~~   90 (340)
                      +.++-|+ +..|+|||+++.++|...+.      .+.+|++||+...
T Consensus        95 g~i~ei~-G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~  140 (310)
T TIGR02236        95 QAITEVF-GEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENT  140 (310)
T ss_pred             CeEEEEE-CCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCC
Confidence            4444444 79999999999999988763      2339999999864

This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=91.94  E-value=0.27  Score=49.91  Aligned_cols=66  Identities=21%  Similarity=0.325  Sum_probs=47.5

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      ++.++++|+|+...  ..+...+..+|.+++|+..+..-.....+....+...+.+.+.+++|+.+..
T Consensus       103 ~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~  170 (632)
T PRK05506        103 KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLV  170 (632)
T ss_pred             CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccc
Confidence            57889999999542  2234567789999999988655444455556666666667788899999863

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=91.94  E-value=0.29  Score=42.49  Aligned_cols=66  Identities=23%  Similarity=0.298  Sum_probs=44.1

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhh-------HHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITS-------LRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s-------~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      .+.+.++|+|+...  ......+..+|.+++|++.....       ...+.+........+.+.+.+++|+.+..
T Consensus        76 ~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~  150 (219)
T cd01883          76 KYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDV  150 (219)
T ss_pred             CeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccc
Confidence            58899999998532  22344556799999998886531       12334444444555656788899999864

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=91.93  E-value=0.36  Score=46.93  Aligned_cols=66  Identities=14%  Similarity=0.244  Sum_probs=48.4

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChh-hHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDIT-SLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      ...+.+||+|+...  ..+.+.+..+|.+++|+..+.. ....+.+.+..++..+.+.+.+++|+++..
T Consensus       116 ~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv  184 (460)
T PTZ00327        116 KRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLV  184 (460)
T ss_pred             cceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEeccccc
Confidence            35689999999542  2334556789999999998764 344556666667777888888999999864

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=91.91  E-value=0.13  Score=41.03  Aligned_cols=31  Identities=32%  Similarity=0.475  Sum_probs=23.4

Q ss_pred             EEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           54 VITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        54 ~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      .++.+..|+||||+|..|+..+.     ..+||.|.
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~~~-----~~~i~~D~   32 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKRLG-----AVVISQDE   32 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHST-----EEEEEHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHCC-----CEEEeHHH
Confidence            45558889999999988876543     66677775

...

>PRK04040 adenylate kinase; Provisional

Probab=91.87  E-value=0.27  Score=41.77  Aligned_cols=26  Identities=46%  Similarity=0.514  Sum_probs=21.9

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHH
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLA   76 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la   76 (340)
                      +++|+|+ +-.|+||||++..|+..+.
T Consensus         2 ~~~i~v~-G~pG~GKtt~~~~l~~~l~   27 (188)
T PRK04040          2 MKVVVVT-GVPGVGKTTVLNKALEKLK   27 (188)
T ss_pred             CeEEEEE-eCCCCCHHHHHHHHHHHhc
Confidence            5677777 7789999999999999885

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=91.86  E-value=0.44  Score=44.97  Aligned_cols=39  Identities=26%  Similarity=0.216  Sum_probs=33.3

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      ..+-+|.|+| ..|+||||++..|...|.++ ++|.++..+
T Consensus         3 ~~~~~i~i~G-~~gsGKTTl~~~l~~~l~~~-~~V~~ik~~   41 (369)
T PRK14490          3 FHPFEIAFCG-YSGSGKTTLITALVRRLSER-FSVGYYKHG   41 (369)
T ss_pred             CCCEEEEEEe-CCCCCHHHHHHHHHHHHhhC-ceEEEEEeC
Confidence            3457889985 46889999999999999999 999999863

>PRK06851 hypothetical protein; Provisional

Probab=91.83  E-value=0.45  Score=44.65  Aligned_cols=40  Identities=20%  Similarity=0.351  Sum_probs=34.0

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      .+++.+. +..|+||||+...++..+.++|.+|.+.-|-..
T Consensus       214 ~~~~~i~-G~pG~GKstl~~~i~~~a~~~G~~v~~~hC~~d  253 (367)
T PRK06851        214 KNRYFLK-GRPGTGKSTMLKKIAKAAEERGFDVEVYHCGFD  253 (367)
T ss_pred             ceEEEEe-CCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            3455554 888999999999999999999999999988765

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=91.81  E-value=1.1  Score=43.39  Aligned_cols=63  Identities=21%  Similarity=0.171  Sum_probs=37.1

Q ss_pred             CCCEEEEcCCCCCCH--H--------HHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGIDA--G--------FITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~~--~--------~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      ++.+.|+||++....  .        +...+..+|.+++|++.+......-...   +.......+.+|+|+.+-.
T Consensus       262 g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~---l~~~~~~piiiV~NK~DL~  334 (449)
T PRK05291        262 GIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEI---LEELKDKPVIVVLNKADLT  334 (449)
T ss_pred             CeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHH---HHhcCCCCcEEEEEhhhcc
Confidence            366789999884321  1        2234667999999988754321111122   2222334677999998853

>cd04106 Rab23_lke Rab23-like subfamily

Probab=91.74  E-value=1.2  Score=36.01  Aligned_cols=66  Identities=17%  Similarity=0.137  Sum_probs=44.1

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc-CCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD-GIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~-~~~~~~vviN~~~~~  231 (340)
                      .+++.|+|+|+..  .......+..+|.++++...+ ..+...+...++.+... ....+.+|.|+.+..
T Consensus        50 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~  119 (162)
T cd04106          50 DVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLL  119 (162)
T ss_pred             EEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcc
Confidence            3788999999853  233445667899988887764 45666666666655532 223567899998853

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>PRK13351 elongation factor G; Reviewed

Probab=91.66  E-value=0.73  Score=47.34  Aligned_cols=85  Identities=21%  Similarity=0.203  Sum_probs=59.2

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHH
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLD  243 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~  243 (340)
                      .+.+.++|||+..+  ......+..+|.+++|++.............+.+...+.+ +.+++|+.+....  .-....++
T Consensus        72 ~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p-~iiviNK~D~~~~--~~~~~~~~  148 (687)
T PRK13351         72 NHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIP-RLIFINKMDRVGA--DLFKVLED  148 (687)
T ss_pred             CEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCC-EEEEEECCCCCCC--CHHHHHHH
Confidence            47889999998653  3456678899999999988655444555666666666655 4589999986531  22234667


Q ss_pred             HHHHhCCcee
Q 047623          244 IQEMLGLALL  253 (340)
Q Consensus       244 i~~~~g~~v~  253 (340)
                      +.+.++.+..
T Consensus       149 i~~~l~~~~~  158 (687)
T PRK13351        149 IEERFGKRPL  158 (687)
T ss_pred             HHHHHCCCeE
Confidence            7788887654

>PRK06761 hypothetical protein; Provisional

Probab=91.65  E-value=0.21  Score=45.20  Aligned_cols=39  Identities=26%  Similarity=0.486  Sum_probs=30.4

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEE-EecCC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVA-IDADV   89 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vll-iD~D~   89 (340)
                      .++|.|. +-.|+||||++..|+..+...|.++-. .+.|+
T Consensus         3 ~~lIvI~-G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~   42 (282)
T PRK06761          3 TKLIIIE-GLPGFGKSTTAKMLNDILSQNGIEVELYLEGNL   42 (282)
T ss_pred             CcEEEEE-CCCCCCHHHHHHHHHHhcCcCceEEEEEecCCC
Confidence            3566666 567899999999999999888888875 45554

>TIGR00484 EF-G translation elongation factor EF-G

Probab=91.63  E-value=0.84  Score=46.88  Aligned_cols=89  Identities=17%  Similarity=0.120  Sum_probs=58.4

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHH
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLD  243 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~  243 (340)
                      ++.+.++|||+...  .....++..+|.+++|++....--.....+.+.+...+.+. .+++|+++.....  ......+
T Consensus        74 ~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~-ivviNK~D~~~~~--~~~~~~~  150 (689)
T TIGR00484        74 GHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPR-IAFVNKMDKTGAN--FLRVVNQ  150 (689)
T ss_pred             CeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCE-EEEEECCCCCCCC--HHHHHHH
Confidence            58899999999653  33456788899999999876543344556666666666654 5899999865311  1223556


Q ss_pred             HHHHhCCce-eEEec
Q 047623          244 IQEMLGLAL-LGVIP  257 (340)
Q Consensus       244 i~~~~g~~v-~~~Ip  257 (340)
                      +.+.++... ...||
T Consensus       151 i~~~l~~~~~~~~ip  165 (689)
T TIGR00484       151 IKQRLGANAVPIQLP  165 (689)
T ss_pred             HHHHhCCCceeEEec
Confidence            777777543 23454

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=91.62  E-value=0.3  Score=47.75  Aligned_cols=66  Identities=20%  Similarity=0.276  Sum_probs=46.2

Q ss_pred             CCCEEEEcCCCCCCH--HHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGIDA--GFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~~--~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      ++.+++||||+....  .+...+..+|.++++++.+..-.....+....+...+.+.+.+++|+++..
T Consensus       106 ~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~  173 (474)
T PRK05124        106 KRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLV  173 (474)
T ss_pred             CcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccc
Confidence            478999999995422  234456789999999988654333344555555555666778899999864

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=91.61  E-value=0.43  Score=42.57  Aligned_cols=41  Identities=32%  Similarity=0.332  Sum_probs=33.1

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCc--EEEEecCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFS--VVAIDADV   89 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~--VlliD~D~   89 (340)
                      +..-+|++. +.-|+||||+|..|+..+++.+.+  |-+|=+|-
T Consensus        80 ~~pfIIgia-GsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDG  122 (283)
T COG1072          80 QRPFIIGIA-GSVAVGKSTTARILQALLSRWPESPKVDLVTMDG  122 (283)
T ss_pred             CCCEEEEec-cCccccHHHHHHHHHHHHhhCCCCCceEEEeccc
Confidence            444566665 778999999999999999998655  88888774

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=91.60  E-value=0.65  Score=47.38  Aligned_cols=88  Identities=19%  Similarity=0.196  Sum_probs=66.7

Q ss_pred             CCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHH
Q 047623          167 PDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDI  244 (340)
Q Consensus       167 ~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i  244 (340)
                      |.+-+||||++.+  .....+|..+|..++|++....-...+..+.+++...+.++ .+++|+.++-.  .+-.....++
T Consensus        76 ~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~-i~fiNKmDR~~--a~~~~~~~~l  152 (697)
T COG0480          76 YRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPR-ILFVNKMDRLG--ADFYLVVEQL  152 (697)
T ss_pred             eEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCe-EEEEECccccc--cChhhhHHHH
Confidence            8889999999775  44577899999999999998877778888888888877765 48899998754  2233456677


Q ss_pred             HHHhCCcee-EEec
Q 047623          245 QEMLGLALL-GVIP  257 (340)
Q Consensus       245 ~~~~g~~v~-~~Ip  257 (340)
                      .+.++.... ..+|
T Consensus       153 ~~~l~~~~~~v~~p  166 (697)
T COG0480         153 KERLGANPVPVQLP  166 (697)
T ss_pred             HHHhCCCceeeecc
Confidence            888876443 3444

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=91.60  E-value=0.19  Score=40.68  Aligned_cols=32  Identities=31%  Similarity=0.420  Sum_probs=24.0

Q ss_pred             EEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           54 VITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        54 ~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      .+..+-.|+||||+|..|+..+   |  ..++|.|.-
T Consensus         2 i~l~G~~GsGKST~a~~l~~~~---~--~~~i~~D~~   33 (150)
T cd02021           2 IVVMGVSGSGKSTVGKALAERL---G--APFIDGDDL   33 (150)
T ss_pred             EEEEcCCCCCHHHHHHHHHhhc---C--CEEEeCccc
Confidence            3455888999999999998864   3  356787765

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51

Probab=91.59  E-value=0.24  Score=44.29  Aligned_cols=40  Identities=30%  Similarity=0.412  Sum_probs=30.6

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHH------CCCcEEEEecCCC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLAR------LGFSVVAIDADVG   90 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~------~g~~VlliD~D~~   90 (340)
                      +.++=|+ +..|+|||.++.+||.....      .+.+|++||.+-.
T Consensus        38 g~itEi~-G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~   83 (256)
T PF08423_consen   38 GSITEIV-GESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGT   83 (256)
T ss_dssp             TSEEEEE-ESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSS
T ss_pred             CcEEEEE-EecccccchHHHHHHHHhhcccccccCCCceEEEeCCCC
Confidence            3444454 78899999999999976541      2568999999976

It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=91.58  E-value=0.19  Score=42.90  Aligned_cols=41  Identities=29%  Similarity=0.401  Sum_probs=28.3

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      ...+.+.++++..|+||||++..+...+.  +.....||.|.-
T Consensus        12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~~D~~   52 (199)
T PF06414_consen   12 QEKPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVIDADEF   52 (199)
T ss_dssp             -SS-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-GGGG
T ss_pred             ccCCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEehHHH
Confidence            34567778889999999999998877665  567888898864

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=91.48  E-value=0.27  Score=40.75  Aligned_cols=35  Identities=29%  Similarity=0.525  Sum_probs=25.8

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      |++.|.++ +-.|+||||++..||..+   |..  ++|.|.
T Consensus         1 ~~~~i~~~-G~~GsGKst~~~~la~~l---g~~--~~d~D~   35 (171)
T PRK03731          1 MTQPLFLV-GARGCGKTTVGMALAQAL---GYR--FVDTDQ   35 (171)
T ss_pred             CCCeEEEE-CCCCCCHHHHHHHHHHHh---CCC--EEEccH
Confidence            34566665 778999999999999876   443  567774

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=91.45  E-value=0.38  Score=41.22  Aligned_cols=65  Identities=18%  Similarity=0.304  Sum_probs=42.9

Q ss_pred             CCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhh-HHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          167 PDFILIDCPAGID--AGFITAITPANEAVLVTTPDITS-LRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s-~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      +.+.++|+|+...  ......+..+|.+++|+..+... .......+..+...+...+.+++|+.+..
T Consensus        83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~  150 (203)
T cd01888          83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLV  150 (203)
T ss_pred             cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhcc
Confidence            6789999998532  22244456679999999887521 12334455555555666678899999864

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=91.41  E-value=0.23  Score=41.62  Aligned_cols=25  Identities=24%  Similarity=0.395  Sum_probs=20.6

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHH
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSL   75 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~l   75 (340)
                      .++|++.|+ .|+||||++..||..+
T Consensus         3 ~~ii~i~G~-~GsGKsTl~~~l~~~~   27 (188)
T TIGR01360         3 CKIIFIVGG-PGSGKGTQCEKIVEKY   27 (188)
T ss_pred             CcEEEEECC-CCCCHHHHHHHHHHHh
Confidence            467888755 9999999999999765

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK13946 shikimate kinase; Provisional

Probab=91.37  E-value=0.28  Score=41.38  Aligned_cols=34  Identities=38%  Similarity=0.576  Sum_probs=25.7

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      .+.|.++ +-.|+||||++..||..|   |.+  ++|.|.
T Consensus        10 ~~~I~l~-G~~GsGKsti~~~LA~~L---g~~--~id~D~   43 (184)
T PRK13946         10 KRTVVLV-GLMGAGKSTVGRRLATML---GLP--FLDADT   43 (184)
T ss_pred             CCeEEEE-CCCCCCHHHHHHHHHHHc---CCC--eECcCH
Confidence            3456666 668999999999999877   555  577773

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=91.34  E-value=5.6  Score=32.08  Aligned_cols=42  Identities=19%  Similarity=0.280  Sum_probs=27.2

Q ss_pred             cCCeEEEEeCCChh-hHHHHHHHHHHHHhcCCCceEEEEecccC
Q 047623          188 PANEAVLVTTPDIT-SLRDADRVTGLLECDGIRDIKMVVNRVRT  230 (340)
Q Consensus       188 ~ad~viiv~~~~~~-s~~~~~~~~~~l~~~~~~~~~vviN~~~~  230 (340)
                      ....|=|++..|.. +-.+..+..+.++..|.+.+ +.++-+..
T Consensus        89 ~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~i-f~vS~~~~  131 (143)
T PF10662_consen   89 NKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEI-FEVSAVTG  131 (143)
T ss_pred             CCCEEEEEECccCccchhhHHHHHHHHHHcCCCCe-EEEECCCC
Confidence            45667777777666 55666677777777777765 55555443

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=91.32  E-value=2.4  Score=34.24  Aligned_cols=65  Identities=12%  Similarity=0.044  Sum_probs=43.1

Q ss_pred             CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623          167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD---GIRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~  231 (340)
                      +.+.|+|+|+..  .......+..+|.++++...+ ..++.......+.+...   ....+.+|.|+++-.
T Consensus        50 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~  120 (164)
T cd04145          50 AILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLE  120 (164)
T ss_pred             EEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccc
Confidence            567789999854  444455677899888888764 44556666555555432   223577889998753

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=91.26  E-value=0.38  Score=37.50  Aligned_cols=30  Identities=37%  Similarity=0.576  Sum_probs=24.1

Q ss_pred             cCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           57 SGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        57 s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      .+..|+|||+++..+|..+   |.+++-+|+..
T Consensus         4 ~G~~G~GKT~l~~~la~~l---~~~~~~i~~~~   33 (132)
T PF00004_consen    4 HGPPGTGKTTLARALAQYL---GFPFIEIDGSE   33 (132)
T ss_dssp             ESSTTSSHHHHHHHHHHHT---TSEEEEEETTH
T ss_pred             ECcCCCCeeHHHHHHHhhc---ccccccccccc
Confidence            3778999999999999987   56777776654

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=91.23  E-value=0.34  Score=40.34  Aligned_cols=31  Identities=42%  Similarity=0.482  Sum_probs=24.6

Q ss_pred             EEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEE
Q 047623           54 VITSGKGGVGKTTTTANVGLSLARLGFSVVAI   85 (340)
Q Consensus        54 ~v~s~kGGvGKTt~a~~LA~~la~~g~~Vlli   85 (340)
                      .++ ++.|+||||+...+...+...|.+|.-+
T Consensus         3 ~iT-G~pG~GKTTll~k~i~~l~~~~~~v~Gf   33 (168)
T PF03266_consen    3 FIT-GPPGVGKTTLLKKVIEELKKKGLPVGGF   33 (168)
T ss_dssp             EEE-S-TTSSHHHHHHHHHHHHHHTCGGEEEE
T ss_pred             EEE-CcCCCCHHHHHHHHHHHhhccCCccceE
Confidence            344 8899999999999999999887776543

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=91.16  E-value=0.22  Score=40.82  Aligned_cols=22  Identities=36%  Similarity=0.441  Sum_probs=18.2

Q ss_pred             EEcCCCCCcHHHHHHHHHHHHH
Q 047623           55 ITSGKGGVGKTTTTANVGLSLA   76 (340)
Q Consensus        55 v~s~kGGvGKTt~a~~LA~~la   76 (340)
                      ..|++.|+||||+|..||..+.
T Consensus         4 tIsG~pGsG~TTva~~lAe~~g   25 (179)
T COG1102           4 TISGLPGSGKTTVARELAEHLG   25 (179)
T ss_pred             EeccCCCCChhHHHHHHHHHhC
Confidence            3469999999999998887654

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=91.13  E-value=2.4  Score=42.84  Aligned_cols=29  Identities=34%  Similarity=0.407  Sum_probs=23.0

Q ss_pred             CCCCEEEEEEcCCCCCcHHHHHHHHHHHHH
Q 047623           47 GETPRVVVITSGKGGVGKTTTTANVGLSLA   76 (340)
Q Consensus        47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la   76 (340)
                      ++....+.|+ +..|+||||+|..||..|-
T Consensus        35 gRLpHA~LFt-GP~GvGKTTLAriLAkaLn   63 (700)
T PRK12323         35 QRLHHAYLFT-GTRGVGKTTLSRILAKSLN   63 (700)
T ss_pred             CCCceEEEEE-CCCCCCHHHHHHHHHHHhc
Confidence            4455666666 6778999999999999875

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=91.11  E-value=1.5  Score=37.12  Aligned_cols=64  Identities=14%  Similarity=0.129  Sum_probs=35.6

Q ss_pred             CCCEEEEcCCCCCCH------HHHH---H----HhcCCeEEEEeCCChhhHHHHHHHHHHHHhc-C---CCceEEEEecc
Q 047623          166 SPDFILIDCPAGIDA------GFIT---A----ITPANEAVLVTTPDITSLRDADRVTGLLECD-G---IRDIKMVVNRV  228 (340)
Q Consensus       166 ~~D~VIiD~~~~~~~------~~~~---~----l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~-~---~~~~~vviN~~  228 (340)
                      ...++|||||+-.+.      ....   .    ....|.+++++..+..+ ..-..+++.+.+. +   .+...+++++.
T Consensus        48 ~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~~t-~~d~~~l~~l~~~fg~~~~~~~ivv~T~~  126 (196)
T cd01852          48 GRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGRFT-EEEEQAVETLQELFGEKVLDHTIVLFTRG  126 (196)
T ss_pred             CeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCCCCEEEEEEEECCCcC-HHHHHHHHHHHHHhChHhHhcEEEEEECc
Confidence            367889999884321      1111   1    12367788888766522 2233445555432 2   25677888887


Q ss_pred             cC
Q 047623          229 RT  230 (340)
Q Consensus       229 ~~  230 (340)
                      +.
T Consensus       127 d~  128 (196)
T cd01852         127 DD  128 (196)
T ss_pred             cc
Confidence            65

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=91.11  E-value=0.22  Score=43.80  Aligned_cols=26  Identities=27%  Similarity=0.589  Sum_probs=21.7

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHH
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLA   76 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la   76 (340)
                      ..|...|+-.||||||+|..+|.-|.
T Consensus        89 p~IILIGGasGVGkStIA~ElA~rLg  114 (299)
T COG2074          89 PLIILIGGASGVGKSTIAGELARRLG  114 (299)
T ss_pred             CeEEEecCCCCCChhHHHHHHHHHcC
Confidence            56677779999999999999998654

>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]

Probab=91.02  E-value=0.23  Score=47.06  Aligned_cols=53  Identities=25%  Similarity=0.366  Sum_probs=42.0

Q ss_pred             CCCCCEEEEEEcCC---CCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCc
Q 047623           46 AGETPRVVVITSGK---GGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLE  101 (340)
Q Consensus        46 ~~~~~~iI~v~s~k---GGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~  101 (340)
                      .++.+|.|.|++-.   -|.||||+++.|+..|.+.|+++..-   .+.|++.-.||++
T Consensus        48 ~k~~gKlILVTaitPTPaGEGKsTttiGL~~al~~lgK~~i~a---lRePSlGP~fGiK  103 (554)
T COG2759          48 NKPDGKLILVTAITPTPAGEGKTTTTIGLVDALNKLGKKAIIA---LREPSLGPVFGIK  103 (554)
T ss_pred             cCCCceEEEEEecCCCCCCCCcceeeehHHHHHHhcCchheEE---eccCCcCCccccc
Confidence            34668888888755   49999999999999999999998764   3347777777765

>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]

Probab=90.95  E-value=1.2  Score=42.58  Aligned_cols=40  Identities=23%  Similarity=0.331  Sum_probs=33.5

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEecCCC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARL-GFSVVAIDADVG   90 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~-g~~VlliD~D~~   90 (340)
                      .-+.+.++..|.|||++|.|+|..+|.. +++|+++-+...
T Consensus       196 ~dLii~AaRP~mGKTafalnia~n~a~~~~~~v~iFSLEM~  236 (435)
T COG0305         196 GDLIIVAARPGMGKTALALNIALNAAADGRKPVAIFSLEMS  236 (435)
T ss_pred             CCEEEEccCCCCChHHHHHHHHHHHHHhcCCCeEEEEccCC
Confidence            3466777999999999999999999975 677888887765

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=90.91  E-value=0.45  Score=37.86  Aligned_cols=38  Identities=32%  Similarity=0.475  Sum_probs=29.4

Q ss_pred             CCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccC
Q 047623           58 GKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLG   99 (340)
Q Consensus        58 ~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~   99 (340)
                      +..|+|||+++..+|..+   +.++..+-+... .+...++|
T Consensus         6 G~~G~GKt~l~~~la~~~---~~~~~~i~~~~~-~~~~dl~g   43 (139)
T PF07728_consen    6 GPPGTGKTTLARELAALL---GRPVIRINCSSD-TTEEDLIG   43 (139)
T ss_dssp             ESSSSSHHHHHHHHHHHH---TCEEEEEE-TTT-STHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHh---hcceEEEEeccc-ccccccee
Confidence            678999999999999999   788888888876 44444443

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=90.81  E-value=0.8  Score=46.07  Aligned_cols=65  Identities=12%  Similarity=0.165  Sum_probs=50.6

Q ss_pred             CCCEEEEcCCCCCCH--HHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGIDA--GFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~~--~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      ++.+.|||||+..+.  .....+..+|.++++++........+...++.+...+.+ ..+++|+.+..
T Consensus        63 ~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip-~IVviNKiD~~  129 (594)
T TIGR01394        63 GTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLK-PIVVINKIDRP  129 (594)
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCC-EEEEEECCCCC
Confidence            478899999986432  345678899999999998766666777777777777776 56899999964

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>cd01864 Rab19 Rab19 subfamily

Probab=90.80  E-value=2  Score=35.01  Aligned_cols=65  Identities=12%  Similarity=0.053  Sum_probs=45.4

Q ss_pred             CCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCCh-hhHHHHHHHHHHHHhcCC--CceEEEEecccCC
Q 047623          167 PDFILIDCPAGID--AGFITAITPANEAVLVTTPDI-TSLRDADRVTGLLECDGI--RDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~~~--~~~~vviN~~~~~  231 (340)
                      +.+.|+|+|+...  ......+..+|.++++...+. .++..+...++.+.....  ..+.+|.|+.+..
T Consensus        52 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~  121 (165)
T cd01864          52 VKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLE  121 (165)
T ss_pred             EEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence            6789999999642  223445677999999888754 466777777777765322  2467889998864

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=90.75  E-value=2.4  Score=39.69  Aligned_cols=30  Identities=20%  Similarity=0.413  Sum_probs=23.3

Q ss_pred             CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHH
Q 047623           47 GETPRVVVITSGKGGVGKTTTTANVGLSLAR   77 (340)
Q Consensus        47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~   77 (340)
                      ++.+..+.|. +.-|+||||+|..+|..+-.
T Consensus        42 grl~ha~L~~-G~~G~GKttlA~~lA~~Llc   71 (351)
T PRK09112         42 GKLHHALLFE-GPEGIGKATLAFHLANHILS   71 (351)
T ss_pred             CCCCeeEeeE-CCCCCCHHHHHHHHHHHHcC
Confidence            4455566666 67789999999999998764

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=90.71  E-value=0.95  Score=34.66  Aligned_cols=60  Identities=23%  Similarity=0.385  Sum_probs=40.9

Q ss_pred             CCCEEEEcCCCCCCH-----------HHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEec
Q 047623          166 SPDFILIDCPAGIDA-----------GFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNR  227 (340)
Q Consensus       166 ~~D~VIiD~~~~~~~-----------~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~  227 (340)
                      ...++++|+|+-.+.           .....+..+|.++++++.+...-.....+++.++  ....+.+|+|+
T Consensus        46 ~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~--~~~~~i~v~NK  116 (116)
T PF01926_consen   46 NKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK--NKKPIILVLNK  116 (116)
T ss_dssp             TEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH--TTSEEEEEEES
T ss_pred             eeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh--cCCCEEEEEcC
Confidence            466789999994321           1233346799999999977633345667777774  55678888885

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]

Probab=90.69  E-value=2  Score=37.27  Aligned_cols=34  Identities=35%  Similarity=0.412  Sum_probs=26.2

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCc--EEEEe
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARLGFS--VVAID   86 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~--VlliD   86 (340)
                      .|.|+ +-.-+||||.|..|..+|.++|.|  |.++|
T Consensus         3 LVvi~-G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~   38 (281)
T KOG3062|consen    3 LVVIC-GLPCSGKSTRAVELREALKERGTKQSVRIID   38 (281)
T ss_pred             eEEEe-CCCCCCchhHHHHHHHHHHhhcccceEEEec
Confidence            34444 778899999999999999999854  44443

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=90.65  E-value=0.22  Score=38.74  Aligned_cols=20  Identities=40%  Similarity=0.479  Sum_probs=17.8

Q ss_pred             EcCCCCCcHHHHHHHHHHHH
Q 047623           56 TSGKGGVGKTTTTANVGLSL   75 (340)
Q Consensus        56 ~s~kGGvGKTt~a~~LA~~l   75 (340)
                      .++..|+||||+|..|+..+
T Consensus         3 i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    3 ISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEESTTSSHHHHHHHHHHHH
T ss_pred             EECCCCCCHHHHHHHHHHHH
Confidence            45788999999999999987

...

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=90.63  E-value=1.8  Score=34.99  Aligned_cols=66  Identities=11%  Similarity=0.073  Sum_probs=45.5

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC-CCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG-IRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~-~~~~~vviN~~~~~  231 (340)
                      .+.+.++|+++..  .......+..+|.++++.+.+ ..+...+...++.+.... ...+.+|.|+.+..
T Consensus        51 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  120 (164)
T cd04101          51 TVELFIFDSAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLA  120 (164)
T ss_pred             EEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence            4788999998743  233455667899999998875 445666666666665442 24567889998753

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04121 Rab40 Rab40 subfamily

Probab=90.56  E-value=6.5  Score=33.21  Aligned_cols=112  Identities=15%  Similarity=0.070  Sum_probs=69.3

Q ss_pred             CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCC-ChhhHHHHHHHHHHHHhcC-CCceEEEEecccCCcccccccccHH
Q 047623          167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTP-DITSLRDADRVTGLLECDG-IRDIKMVVNRVRTDMIKGEDMMSVL  242 (340)
Q Consensus       167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~~-~~~~~vviN~~~~~~~~~~~~~~~~  242 (340)
                      +.+-|.|+++..  ..........+|.++++.+. +..++..+...++.+.... ...+.+|-|+.+-....  . ....
T Consensus        55 ~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~--~-v~~~  131 (189)
T cd04121          55 VKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKR--Q-VATE  131 (189)
T ss_pred             EEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhcc--C-CCHH
Confidence            677899998754  22334455789999998887 4778888888888886542 23567888998753210  0 1111


Q ss_pred             HHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCCC--HHHHHHHHHHHHHHhcccc
Q 047623          243 DIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPT--LAGLAFEQAAWRLVEQDSM  298 (340)
Q Consensus       243 ~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~s--~~~~~~~~la~~i~~~~~~  298 (340)
                      +..+                 -+...+.++++.+.+.  .....|..+++.+..+.+.
T Consensus       132 ~~~~-----------------~a~~~~~~~~e~SAk~g~~V~~~F~~l~~~i~~~~~~  172 (189)
T cd04121         132 QAQA-----------------YAERNGMTFFEVSPLCNFNITESFTELARIVLMRHGR  172 (189)
T ss_pred             HHHH-----------------HHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHhcCC
Confidence            1111                 1112344455544332  3667788999888887764

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=90.55  E-value=3.1  Score=33.48  Aligned_cols=66  Identities=11%  Similarity=0.012  Sum_probs=43.9

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD---GIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~  231 (340)
                      .+.+.|+|+|+..  .......+..+|.++++...+ ..++.........+...   ....+.+|.|+.+..
T Consensus        47 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~  118 (164)
T cd04139          47 DVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLE  118 (164)
T ss_pred             EEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccc
Confidence            3778999999844  334445667888887777653 45566666665555543   234678999999864

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd01866 Rab2 Rab2 subfamily

Probab=90.41  E-value=2.8  Score=34.30  Aligned_cols=65  Identities=11%  Similarity=-0.026  Sum_probs=46.1

Q ss_pred             CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCC-ChhhHHHHHHHHHHHHhcC--CCceEEEEecccCC
Q 047623          167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTP-DITSLRDADRVTGLLECDG--IRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~~  231 (340)
                      ..+.|+|+++..  .......+..+|.++++.+. +..++..+...++.+....  ...+.+|.|+.+..
T Consensus        53 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~  122 (168)
T cd01866          53 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLE  122 (168)
T ss_pred             EEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence            567899998853  23344566789999999887 4667777777777776542  23577888998754

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=90.36  E-value=2.5  Score=34.37  Aligned_cols=64  Identities=16%  Similarity=0.123  Sum_probs=44.6

Q ss_pred             CCEEEEcCCCCC---CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC----CCceEEEEecccC
Q 047623          167 PDFILIDCPAGI---DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG----IRDIKMVVNRVRT  230 (340)
Q Consensus       167 ~D~VIiD~~~~~---~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~----~~~~~vviN~~~~  230 (340)
                      +.+-|+|+|+..   .......+..+|.++++.+.+ ..++..+....+.+....    -..+.+|.|+.+-
T Consensus        47 ~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  118 (165)
T cd04146          47 VSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADL  118 (165)
T ss_pred             EEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCch
Confidence            567789999855   233455677899999998874 566777777666666532    2357788898874

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=90.33  E-value=0.67  Score=39.98  Aligned_cols=37  Identities=32%  Similarity=0.391  Sum_probs=30.7

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEe
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAID   86 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD   86 (340)
                      +++.|+|= +=-|+||||.+..|+.+|.++|.+|.+.-
T Consensus         2 ~g~fI~iE-GiDGaGKTT~~~~L~~~l~~~g~~v~~tr   38 (208)
T COG0125           2 KGMFIVIE-GIDGAGKTTQAELLKERLEERGIKVVLTR   38 (208)
T ss_pred             CceEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence            35677776 55688999999999999999999888763

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=90.29  E-value=0.29  Score=44.63  Aligned_cols=34  Identities=24%  Similarity=0.350  Sum_probs=25.0

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      .+.++.+..|+||||+|..|+..+.    ....+|.|.
T Consensus         3 ~liil~G~pGSGKSTla~~L~~~~~----~~~~l~~D~   36 (300)
T PHA02530          3 KIILTVGVPGSGKSTWAREFAAKNP----KAVNVNRDD   36 (300)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCC----CCEEEeccH
Confidence            3444458899999999999988752    456677664

>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC

Probab=90.28  E-value=0.4  Score=42.04  Aligned_cols=30  Identities=23%  Similarity=0.361  Sum_probs=26.2

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEE
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVA   84 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vll   84 (340)
                      +|+|+|   +.||||+...||..+..+|++|++
T Consensus         1 vi~~vG---~gGKTtl~~~l~~~~~~~g~~v~~   30 (232)
T TIGR03172         1 VIAFVG---AGGKTSTMFWLAAEYRKEGYRVLV   30 (232)
T ss_pred             CEEEEc---CCcHHHHHHHHHHHHHHCCCeEEE
Confidence            466665   479999999999999999999988

This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.

>PRK13947 shikimate kinase; Provisional

Probab=90.25  E-value=0.49  Score=39.07  Aligned_cols=32  Identities=41%  Similarity=0.547  Sum_probs=23.7

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      -|.+. +-.|+||||++..||..|   |.+  ++|.|.
T Consensus         3 ~I~l~-G~~GsGKst~a~~La~~l---g~~--~id~d~   34 (171)
T PRK13947          3 NIVLI-GFMGTGKTTVGKRVATTL---SFG--FIDTDK   34 (171)
T ss_pred             eEEEE-cCCCCCHHHHHHHHHHHh---CCC--EEECch
Confidence            34444 778999999999998876   544  477774

>PTZ00386 formyl tetrahydrofolate synthetase; Provisional

Probab=90.23  E-value=0.43  Score=46.86  Aligned_cols=52  Identities=25%  Similarity=0.276  Sum_probs=40.6

Q ss_pred             CCCCEEEEEEcC---CCCCcHHHHHHHHHHHHH-HCCCcEEEEecCCCCCCchhccCCc
Q 047623           47 GETPRVVVITSG---KGGVGKTTTTANVGLSLA-RLGFSVVAIDADVGLRNLDLLLGLE  101 (340)
Q Consensus        47 ~~~~~iI~v~s~---kGGvGKTt~a~~LA~~la-~~g~~VlliD~D~~~~~l~~~~~~~  101 (340)
                      ++.+|.|.|++-   .-|.||||++..|+..|. +.|+++++.   .+.|++.-.||++
T Consensus        65 ~~~gklIlVTaitPTP~GEGKtTttIGL~~aL~~~lgk~~~~~---lRePSlGP~FGiK  120 (625)
T PTZ00386         65 SPNGKYVVVAGMNPTPLGEGKSTTTIGLAQSLGAHLHRKTFAC---IRQPSQGPTFGIK  120 (625)
T ss_pred             CCCCcEEEEeecCCCCCCCCccchhhhhHHHHHHHhCcceEEE---EecCCcCCcCCcc
Confidence            456788888765   459999999999999999 679998875   3336666667655

>cd01131 PilT Pilus retraction ATPase PilT

Probab=90.22  E-value=5.3  Score=34.04  Aligned_cols=35  Identities=29%  Similarity=0.421  Sum_probs=24.8

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEec
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARL-GFSVVAIDA   87 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~-g~~VlliD~   87 (340)
                      +|.|. +..|+||||+...++..+... +.+++.++-
T Consensus         3 lilI~-GptGSGKTTll~~ll~~~~~~~~~~i~t~e~   38 (198)
T cd01131           3 LVLVT-GPTGSGKSTTLAAMIDYINKNKTHHILTIED   38 (198)
T ss_pred             EEEEE-CCCCCCHHHHHHHHHHHhhhcCCcEEEEEcC
Confidence            34444 788999999999988888754 445555543

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK13973 thymidylate kinase; Provisional

Probab=90.21  E-value=0.63  Score=40.26  Aligned_cols=36  Identities=25%  Similarity=0.424  Sum_probs=30.4

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEe
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAID   86 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD   86 (340)
                      ++.|+|- +-.|+||||.+..|+.+|...|++|....
T Consensus         3 g~~IviE-G~dGsGKtTq~~~l~~~l~~~g~~~~~~~   38 (213)
T PRK13973          3 GRFITFE-GGEGAGKSTQIRLLAERLRAAGYDVLVTR   38 (213)
T ss_pred             ceEEEEE-cCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence            4667775 66789999999999999999999997764

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=90.15  E-value=0.33  Score=41.55  Aligned_cols=34  Identities=21%  Similarity=0.395  Sum_probs=24.1

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      .+.+.++.+|+||||+|..||..+   |..+ ++..|.
T Consensus         4 ~~i~i~G~~G~GKst~a~~l~~~~---~~~~-~~~~D~   37 (197)
T PRK12339          4 TIHFIGGIPGVGKTSISGYIARHR---AIDI-VLSGDY   37 (197)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc---CCeE-EehhHH
Confidence            355556899999999999888864   5444 455553

>cd04148 RGK RGK subfamily

Probab=90.08  E-value=2.5  Score=36.67  Aligned_cols=65  Identities=17%  Similarity=0.086  Sum_probs=45.8

Q ss_pred             CCCEEEEcCCCCCCHHHHHHHh-cCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC---CCceEEEEecccC
Q 047623          166 SPDFILIDCPAGIDAGFITAIT-PANEAVLVTTPD-ITSLRDADRVTGLLECDG---IRDIKMVVNRVRT  230 (340)
Q Consensus       166 ~~D~VIiD~~~~~~~~~~~~l~-~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~---~~~~~vviN~~~~  230 (340)
                      .+++.|+|+++.........+. .+|.++++...+ ..++..+...++.+....   ...+.+|.|+.+-
T Consensus        49 ~~~l~i~Dt~G~~~~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl  118 (221)
T cd04148          49 ESTLVVIDHWEQEMWTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDL  118 (221)
T ss_pred             EEEEEEEeCCCcchHHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhc
Confidence            4788999999865222233455 799999888774 567777777777776532   2467899999885

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=90.04  E-value=0.61  Score=44.94  Aligned_cols=66  Identities=26%  Similarity=0.386  Sum_probs=45.4

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCCh--hhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDI--TSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~--~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      ++.+.++|+|+...  ..+...+..+|.+++|++.+.  .-.....+.+..+...+...+.+++|+.+..
T Consensus        83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~  152 (425)
T PRK12317         83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAV  152 (425)
T ss_pred             CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccc
Confidence            58899999999542  223445678999999988864  2223344455555555666688999999864

>cd01860 Rab5_related Rab5-related subfamily

Probab=90.01  E-value=2.8  Score=33.86  Aligned_cols=66  Identities=17%  Similarity=0.064  Sum_probs=45.6

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcCC--CceEEEEecccCC
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDGI--RDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~~--~~~~vviN~~~~~  231 (340)
                      .+.+.|+|+|+..  .......+..+|.++++..++ ..++..+...++.+.....  ..+.++.|+.+..
T Consensus        49 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~  119 (163)
T cd01860          49 TVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLE  119 (163)
T ss_pred             EEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence            3667899999853  222334556799999998874 5678888887777765442  2466788998754

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=89.79  E-value=1.1  Score=45.16  Aligned_cols=36  Identities=22%  Similarity=0.210  Sum_probs=26.7

Q ss_pred             CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEE
Q 047623           47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVA   84 (340)
Q Consensus        47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vll   84 (340)
                      -+.+..++++ +..|+||||++.-|+..+...| ++.+
T Consensus       373 i~~G~~vaIv-G~SGsGKSTL~~lL~g~~p~~G-~I~i  408 (588)
T PRK11174        373 LPAGQRIALV-GPSGAGKTSLLNALLGFLPYQG-SLKI  408 (588)
T ss_pred             EcCCCEEEEE-CCCCCCHHHHHHHHhcCCCCCc-EEEE
Confidence            3567888998 6778899999999988773334 4443

>smart00175 RAB Rab subfamily of small GTPases

Probab=89.72  E-value=2.7  Score=33.90  Aligned_cols=65  Identities=15%  Similarity=-0.018  Sum_probs=44.7

Q ss_pred             CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCCh-hhHHHHHHHHHHHHhcC--CCceEEEEecccCC
Q 047623          167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPDI-TSLRDADRVTGLLECDG--IRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~~  231 (340)
                      +.+.++|+|+..  .......+..+|.++++..... .+...+...++.+....  ...+.+|.|+.+..
T Consensus        49 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~  118 (164)
T smart00175       49 VKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLE  118 (164)
T ss_pred             EEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc
Confidence            577899999854  2233445677999999888754 56766666666665432  24677899998854

Rab GTPases are implicated in vesicle trafficking.

>PRK06851 hypothetical protein; Provisional

Probab=89.71  E-value=0.89  Score=42.73  Aligned_cols=46  Identities=24%  Similarity=0.397  Sum_probs=35.5

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCch
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLD   95 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~   95 (340)
                      .+.+.+..+..|+||||+...++..+.++|+.|-.+=+..+..++.
T Consensus        29 ~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~~~~~d~~slD   74 (367)
T PRK06851         29 ANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFLHCSSDNDSLD   74 (367)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcCCCCCcee
Confidence            3455566688999999999999999999999888776655533443

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=89.71  E-value=0.52  Score=41.74  Aligned_cols=35  Identities=29%  Similarity=0.281  Sum_probs=25.4

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      |.+|+++ +.=|+||||++.-|...   .|.+|  ||+|.-
T Consensus         1 M~iIGlT-GgIgSGKStVs~~L~~~---~G~~v--iDaD~i   35 (244)
T PTZ00451          1 MILIGLT-GGIACGKSTVSRILREE---HHIEV--IDADLV   35 (244)
T ss_pred             CeEEEEE-CCCCCCHHHHHHHHHHH---cCCeE--EehHHH
Confidence            4688888 66789999988665542   37666  888853

>cd01861 Rab6 Rab6 subfamily

Probab=89.70  E-value=3.8  Score=32.90  Aligned_cols=65  Identities=17%  Similarity=0.039  Sum_probs=44.7

Q ss_pred             CCEEEEcCCCCCCH--HHHHHHhcCCeEEEEeCCCh-hhHHHHHHHHHHHHhcCC--CceEEEEecccCC
Q 047623          167 PDFILIDCPAGIDA--GFITAITPANEAVLVTTPDI-TSLRDADRVTGLLECDGI--RDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~~~--~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~~~--~~~~vviN~~~~~  231 (340)
                      +.+.++|+|+....  .....+..+|.++++...+. .+...+...++.+.....  ..+.++.|+.+..
T Consensus        49 ~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~  118 (161)
T cd01861          49 VRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLS  118 (161)
T ss_pred             EEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcc
Confidence            56789999985422  23445678999999988854 456666666666654322  4688999998873

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=89.68  E-value=0.6  Score=40.00  Aligned_cols=32  Identities=34%  Similarity=0.408  Sum_probs=24.6

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      |++|+++ +.-|+||||++..|+.    .|..  ++|+|
T Consensus         1 m~~igit-G~igsGKst~~~~l~~----~g~~--vid~D   32 (200)
T PRK14734          1 MLRIGLT-GGIGSGKSTVADLLSS----EGFL--IVDAD   32 (200)
T ss_pred             CeEEEEE-CCCCCCHHHHHHHHHH----CCCe--EEeCc
Confidence            3678888 5668899999988873    5765  58887

>PRK14527 adenylate kinase; Provisional

Probab=89.68  E-value=0.47  Score=40.18  Aligned_cols=27  Identities=30%  Similarity=0.489  Sum_probs=21.6

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHH
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSL   75 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~l   75 (340)
                      +++++|.|. +..|+||||+|..||..+
T Consensus         4 ~~~~~i~i~-G~pGsGKsT~a~~La~~~   30 (191)
T PRK14527          4 TKNKVVIFL-GPPGAGKGTQAERLAQEL   30 (191)
T ss_pred             CCCcEEEEE-CCCCCCHHHHHHHHHHHh
Confidence            455777777 558999999999998765

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=89.64  E-value=0.58  Score=42.64  Aligned_cols=34  Identities=26%  Similarity=0.557  Sum_probs=24.6

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      .+.+.++-.|+||||+|..||..|   |..+ +|..|.
T Consensus        93 ~iIlI~G~sgsGKStlA~~La~~l---~~~~-vi~~D~  126 (301)
T PRK04220         93 IIILIGGASGVGTSTIAFELASRL---GIRS-VIGTDS  126 (301)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHh---CCCE-EEechH
Confidence            344455888999999999999877   5553 455554

>cd04127 Rab27A Rab27a subfamily

Probab=89.55  E-value=2.6  Score=34.80  Aligned_cols=66  Identities=14%  Similarity=0.045  Sum_probs=45.9

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC---CCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG---IRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~---~~~~~vviN~~~~~  231 (340)
                      .+.+-|+|+++...  ......+..+|.++++.+.+ ..+...+...++.+....   ...+.+|.|+.+-.
T Consensus        62 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~  133 (180)
T cd04127          62 RIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLE  133 (180)
T ss_pred             EEEEEEEeCCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccch
Confidence            36788999998542  23345567899999888874 667777777777665432   23577889998753

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04112 Rab26 Rab26 subfamily

Probab=89.49  E-value=2.5  Score=35.50  Aligned_cols=64  Identities=9%  Similarity=-0.033  Sum_probs=44.8

Q ss_pred             CCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcCC--CceEEEEecccC
Q 047623          167 PDFILIDCPAGID--AGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDGI--RDIKMVVNRVRT  230 (340)
Q Consensus       167 ~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~~--~~~~vviN~~~~  230 (340)
                      +.+.|+|+|+...  ......+..+|.++++.+.+ ..++..+...++.+.....  ..+.+|.|+.+-
T Consensus        50 ~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl  118 (191)
T cd04112          50 VKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADM  118 (191)
T ss_pred             EEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccc
Confidence            6788999998542  22344567799999998875 4566777777777765432  357788899885

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04110 Rab35 Rab35 subfamily

Probab=89.34  E-value=3.5  Score=34.98  Aligned_cols=65  Identities=12%  Similarity=-0.019  Sum_probs=44.7

Q ss_pred             CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCC-ChhhHHHHHHHHHHHHhc-CCCceEEEEecccCC
Q 047623          167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTP-DITSLRDADRVTGLLECD-GIRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~-~~~~~~vviN~~~~~  231 (340)
                      +.+.|+|+|+..  .......+..+|.++++.+. +..++..+...++.+... ....+.+|.|+.+..
T Consensus        55 ~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~  123 (199)
T cd04110          55 VKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDP  123 (199)
T ss_pred             EEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccc
Confidence            567899999854  23344556779988888877 456777777777766553 224567889998753

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>PRK05707 DNA polymerase III subunit delta'; Validated

Probab=89.32  E-value=9.4  Score=35.43  Aligned_cols=121  Identities=14%  Similarity=0.175  Sum_probs=65.9

Q ss_pred             CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCc--hhccCCcCCCcccHHHhhcCCCccccceec
Q 047623           47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNL--DLLLGLENRVNYTVVEVLNGDCRLDQALVR  124 (340)
Q Consensus        47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  124 (340)
                      ++.+..+.|. +..|+||+++|..+|..+--.+..    +.++. +..  +..+...                       
T Consensus        19 ~r~~ha~Lf~-G~~G~GK~~~A~~~A~~llC~~~~----~~~~C-g~C~sC~~~~~g-----------------------   69 (328)
T PRK05707         19 GRHPHAYLLH-GPAGIGKRALAERLAAALLCEAPQ----GGGAC-GSCKGCQLLRAG-----------------------   69 (328)
T ss_pred             CCcceeeeeE-CCCCCCHHHHHHHHHHHHcCCCCC----CCCCC-CCCHHHHHHhcC-----------------------
Confidence            4666778887 566899999999999987632210    11222 111  1111000                       


Q ss_pred             ccccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHh-ccCCCCEEEEcCCCCCCHHHHHHH----hc--CCeEEEEeC
Q 047623          125 DKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSR-QEGSPDFILIDCPAGIDAGFITAI----TP--ANEAVLVTT  197 (340)
Q Consensus       125 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~D~VIiD~~~~~~~~~~~~l----~~--ad~viiv~~  197 (340)
                        ..|++..+.....    .....-+.++.+++.+... ....+.++|||-.-.++....+++    +.  .+.+++.++
T Consensus        70 --~HPD~~~i~~~~~----~~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t  143 (328)
T PRK05707         70 --SHPDNFVLEPEEA----DKTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLIS  143 (328)
T ss_pred             --CCCCEEEEeccCC----CCCCCHHHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEE
Confidence              1144444421111    1224556777777776653 245688999998887766554443    33  345555555


Q ss_pred             CChhh
Q 047623          198 PDITS  202 (340)
Q Consensus       198 ~~~~s  202 (340)
                      .+...
T Consensus       144 ~~~~~  148 (328)
T PRK05707        144 HQPSR  148 (328)
T ss_pred             CChhh
Confidence            44433

>PLN02422 dephospho-CoA kinase

Probab=89.23  E-value=0.6  Score=40.96  Aligned_cols=34  Identities=38%  Similarity=0.409  Sum_probs=25.7

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      |++|+++ +.-|+||||++..|+    +.|..|  +|+|.-
T Consensus         1 M~~iglt-G~igsGKstv~~~l~----~~g~~~--idaD~~   34 (232)
T PLN02422          1 MRVVGLT-GGIASGKSTVSNLFK----SSGIPV--VDADKV   34 (232)
T ss_pred             CeEEEEE-CCCCCCHHHHHHHHH----HCCCeE--EehhHH
Confidence            3578888 677899999998777    357765  888853

>cd04122 Rab14 Rab14 subfamily

Probab=89.16  E-value=3.7  Score=33.43  Aligned_cols=66  Identities=11%  Similarity=-0.061  Sum_probs=45.4

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcCC--CceEEEEecccCC
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDGI--RDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~~--~~~~vviN~~~~~  231 (340)
                      .+.+.|+|+|+...  ......+..+|.++++.+.. ..++..+...++.+.....  ..+.+|.|+.+-.
T Consensus        50 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~  120 (166)
T cd04122          50 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLE  120 (166)
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence            37789999998542  23345567899999988875 4667777777766654322  3577888998753

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=89.10  E-value=3.6  Score=33.38  Aligned_cols=64  Identities=9%  Similarity=-0.010  Sum_probs=43.7

Q ss_pred             CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC--CCceEEEEecccC
Q 047623          167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG--IRDIKMVVNRVRT  230 (340)
Q Consensus       167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~  230 (340)
                      +.+-|+|+|+..  .......+..+|.++++.+.+ ..++..+...++.+....  ...+.+|.|+.+-
T Consensus        51 ~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl  119 (166)
T cd01869          51 IKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL  119 (166)
T ss_pred             EEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhc
Confidence            667899998854  223345567799999998774 556777776666665432  2356788899874

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=89.08  E-value=1.7  Score=37.31  Aligned_cols=66  Identities=15%  Similarity=-0.040  Sum_probs=42.9

Q ss_pred             CCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCCh-h-hHHHHHHHHHHHHhcC--CCceEEEEecccCCc
Q 047623          167 PDFILIDCPAGID--AGFITAITPANEAVLVTTPDI-T-SLRDADRVTGLLECDG--IRDIKMVVNRVRTDM  232 (340)
Q Consensus       167 ~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~-~-s~~~~~~~~~~l~~~~--~~~~~vviN~~~~~~  232 (340)
                      ++..++|+++...  .........++.++++..... . .........+.+....  ...+.++.|+.+-..
T Consensus        54 ~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~  125 (219)
T COG1100          54 IKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFD  125 (219)
T ss_pred             EEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEeccccccc
Confidence            6789999988553  234445567888888877764 3 3444455555665544  246778889987654

>PRK10536 hypothetical protein; Provisional

Probab=89.06  E-value=1.1  Score=39.96  Aligned_cols=33  Identities=18%  Similarity=0.332  Sum_probs=23.5

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEE
Q 047623           53 VVITSGKGGVGKTTTTANVGLSLA-RLGFSVVAI   85 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~la-~~g~~Vlli   85 (340)
                      +.+.-+.-|+|||++|..+|...- ...++.++|
T Consensus        76 lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI  109 (262)
T PRK10536         76 LIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV  109 (262)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence            444448889999999999998543 444555554

>PRK07773 replicative DNA helicase; Validated

Probab=89.02  E-value=0.58  Score=49.47  Aligned_cols=42  Identities=17%  Similarity=0.232  Sum_probs=35.3

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEecCCCCCC
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARL-GFSVVAIDADVGLRN   93 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~-g~~VlliD~D~~~~~   93 (340)
                      -+.+.++..|+|||++|.|+|...|.. |.+|+++-++.....
T Consensus       218 ~livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~q  260 (886)
T PRK07773        218 QLIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQ  260 (886)
T ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHH
Confidence            466667999999999999999999854 899999999876433

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=89.02  E-value=0.69  Score=41.40  Aligned_cols=35  Identities=31%  Similarity=0.395  Sum_probs=27.9

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      -|.+. +..|+|||++|..+|..   .|.++..+.++..
T Consensus        23 ~vLL~-G~~GtGKT~lA~~la~~---lg~~~~~i~~~~~   57 (262)
T TIGR02640        23 PVHLR-GPAGTGKTTLAMHVARK---RDRPVMLINGDAE   57 (262)
T ss_pred             eEEEE-cCCCCCHHHHHHHHHHH---hCCCEEEEeCCcc
Confidence            33344 78899999999999873   3889999999875

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=89.01  E-value=3.7  Score=33.46  Aligned_cols=65  Identities=14%  Similarity=0.030  Sum_probs=44.9

Q ss_pred             CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCC-ChhhHHHHHHHHHHHHhcCC--CceEEEEecccCC
Q 047623          167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTP-DITSLRDADRVTGLLECDGI--RDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~~~--~~~~vviN~~~~~  231 (340)
                      +.+.|+|+++..  .......+..||.++++... +..++..+.+.++.+.....  ..+.+|.|+.+-.
T Consensus        52 ~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~  121 (167)
T cd01867          52 IKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDME  121 (167)
T ss_pred             EEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence            677899999854  23334556789999999875 46677777777776665322  3567888998754

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=89.01  E-value=0.68  Score=39.49  Aligned_cols=33  Identities=30%  Similarity=0.475  Sum_probs=24.3

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      ++|+++ +.-|+||||++..|+..+   |..|  +|+|-
T Consensus         2 ~~i~it-G~~gsGKst~~~~l~~~~---g~~~--i~~D~   34 (195)
T PRK14730          2 RRIGLT-GGIASGKSTVGNYLAQQK---GIPI--LDADI   34 (195)
T ss_pred             cEEEEE-CCCCCCHHHHHHHHHHhh---CCeE--eeCcH
Confidence            467787 678999999998777532   6665  57774

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=89.00  E-value=4.3  Score=41.83  Aligned_cols=41  Identities=27%  Similarity=0.352  Sum_probs=28.2

Q ss_pred             hHHHHHhhCCCCCCCCCCCEEEEEEcCCCCCcHHHHHHHHHHHHH
Q 047623           32 SIQSVLQWNRKPELAGETPRVVVITSGKGGVGKTTTTANVGLSLA   76 (340)
Q Consensus        32 ~~~~~l~~~~~~~~~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la   76 (340)
                      .+.+.|+....   .++....+.|+ +.-|+||||++..||+.|-
T Consensus        23 ~Vv~~L~~aL~---~gRL~HAyLFt-GPpGvGKTTlAriLAKaLn   63 (830)
T PRK07003         23 HVVRALTHALD---GGRLHHAYLFT-GTRGVGKTTLSRIFAKALN   63 (830)
T ss_pred             HHHHHHHHHHh---cCCCCeEEEEE-CCCCCCHHHHHHHHHHHhc
Confidence            34555554432   34456666766 5569999999999999876

>PRK08769 DNA polymerase III subunit delta'; Validated

Probab=88.99  E-value=9  Score=35.38  Aligned_cols=44  Identities=16%  Similarity=0.154  Sum_probs=29.2

Q ss_pred             ChhhHHHHHhhCCCCCCCCCCCEEEEEEcCCCCCcHHHHHHHHHHHHH
Q 047623           29 SKSSIQSVLQWNRKPELAGETPRVVVITSGKGGVGKTTTTANVGLSLA   76 (340)
Q Consensus        29 ~~~~~~~~l~~~~~~~~~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la   76 (340)
                      +.......+.....   .++.+..+.|. +..|+||+++|..+|.++-
T Consensus         8 W~~~~~~~l~~~~~---~~rl~HA~Lf~-Gp~G~GK~~lA~~lA~~Ll   51 (319)
T PRK08769          8 WQQRAYDQTVAALD---AGRLGHGLLIC-GPEGLGKRAVALALAEHVL   51 (319)
T ss_pred             cHHHHHHHHHHHHH---cCCcceeEeeE-CCCCCCHHHHHHHHHHHHh
Confidence            33444444444321   34666778888 5668899999999998765

>PRK12338 hypothetical protein; Provisional

Probab=88.98  E-value=0.41  Score=44.02  Aligned_cols=34  Identities=24%  Similarity=0.490  Sum_probs=23.7

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      .+.+.++.+|+||||+|..||..+   |.+. +++.|.
T Consensus         5 ~ii~i~G~sGsGKST~a~~la~~l---~~~~-~~~tD~   38 (319)
T PRK12338          5 YVILIGSASGIGKSTIASELARTL---NIKH-LIETDF   38 (319)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHC---CCeE-EccChH
Confidence            344555888999999999998876   4443 445554

>PRK13975 thymidylate kinase; Provisional

Probab=88.89  E-value=0.55  Score=39.75  Aligned_cols=27  Identities=30%  Similarity=0.423  Sum_probs=21.8

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHH
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLA   76 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la   76 (340)
                      |++.|+|. +-.|+||||++..||..+.
T Consensus         1 m~~~I~ie-G~~GsGKtT~~~~L~~~l~   27 (196)
T PRK13975          1 MNKFIVFE-GIDGSGKTTQAKLLAEKLN   27 (196)
T ss_pred             CCeEEEEE-CCCCCCHHHHHHHHHHHhC
Confidence            34567766 6778999999999999885

>cd01895 EngA2 EngA2 subfamily

Probab=88.83  E-value=1.8  Score=35.05  Aligned_cols=65  Identities=23%  Similarity=0.282  Sum_probs=41.3

Q ss_pred             CCCEEEEcCCCCCCH-------------HHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGIDA-------------GFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~~-------------~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      ..++.++|+|+....             .....+..+|.++++++...........+.+.+...+ ..+.+++|+++..
T Consensus        49 ~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~-~~~iiv~nK~Dl~  126 (174)
T cd01895          49 GKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEG-KALVIVVNKWDLV  126 (174)
T ss_pred             CeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcC-CCEEEEEeccccC
Confidence            357889999984211             1123456799999999875543333445555555444 4677899998754

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=88.80  E-value=3.4  Score=33.84  Aligned_cols=66  Identities=12%  Similarity=0.157  Sum_probs=45.8

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCCh-hhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPDI-TSLRDADRVTGLLECD---GIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~  231 (340)
                      .+.+.|+|+|+..  .......+..||.++++.+... .++..+...+..+...   ....+.+|.|+.+..
T Consensus        42 ~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~  113 (167)
T cd04161          42 KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKK  113 (167)
T ss_pred             CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCc
Confidence            4788999999854  2334556788999999988754 4566666666655432   224678999999864

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=88.75  E-value=0.55  Score=38.95  Aligned_cols=26  Identities=46%  Similarity=0.742  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcE
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARLGFSV   82 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~V   82 (340)
                      .|+|+ +..|+||||++--|+    +.|+++
T Consensus         2 ~I~IT-GTPGvGKTT~~~~L~----~lg~~~   27 (180)
T COG1936           2 LIAIT-GTPGVGKTTVCKLLR----ELGYKV   27 (180)
T ss_pred             eEEEe-CCCCCchHHHHHHHH----HhCCce
Confidence            56777 778999999998777    446555

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=88.74  E-value=0.37  Score=43.49  Aligned_cols=34  Identities=21%  Similarity=0.267  Sum_probs=25.0

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      +|+++ +..|+||||++..|+..+...|..  ++.+|
T Consensus         1 iigI~-G~sGsGKSTl~~~L~~ll~~~~~~--vi~~D   34 (273)
T cd02026           1 IIGVA-GDSGCGKSTFLRRLTSLFGSDLVT--VICLD   34 (273)
T ss_pred             CEEEE-CCCCCCHHHHHHHHHHhhCCCceE--EEECc
Confidence            35666 778999999999999888665534  44455

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2

Probab=88.74  E-value=0.56  Score=39.41  Aligned_cols=30  Identities=33%  Similarity=0.434  Sum_probs=24.9

Q ss_pred             CCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           60 GGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        60 GGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      -|+||||.+..|+.+|...|.+ .++...+.
T Consensus         5 DGsGKtT~~~~L~~~l~~~~~~-~~~~~~~~   34 (186)
T PF02223_consen    5 DGSGKTTQIRLLAEALKEKGYK-VIITFPPG   34 (186)
T ss_dssp             TTSSHHHHHHHHHHHHHHTTEE-EEEEESST
T ss_pred             CCCCHHHHHHHHHHHHHHcCCc-ccccCCCC
Confidence            5999999999999999999998 44455444

7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....

>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []

Probab=88.71  E-value=0.74  Score=40.80  Aligned_cols=40  Identities=30%  Similarity=0.441  Sum_probs=31.6

Q ss_pred             EEEEEEc-CCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           51 RVVVITS-GKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        51 ~iI~v~s-~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      |-|.|+| --.|.||-.+|++++..|..+|++|..+.+||.
T Consensus         2 KyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~K~DPY   42 (276)
T PF06418_consen    2 KYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMIKIDPY   42 (276)
T ss_dssp             EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEEEEE-S
T ss_pred             cEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeeeeeccc
Confidence            4455554 467999999999999999999999999999984

The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.

>cd04176 Rap2 Rap2 subgroup

Probab=88.61  E-value=5.2  Score=32.29  Aligned_cols=64  Identities=13%  Similarity=0.044  Sum_probs=42.7

Q ss_pred             CCEEEEcCCCC--CCHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc---CCCceEEEEecccC
Q 047623          167 PDFILIDCPAG--IDAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD---GIRDIKMVVNRVRT  230 (340)
Q Consensus       167 ~D~VIiD~~~~--~~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~  230 (340)
                      +.+.|+|+++.  ........+..+|.++++.... ..++..+....+.+...   ....+.+|.|+.+.
T Consensus        49 ~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl  118 (163)
T cd04176          49 SVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDL  118 (163)
T ss_pred             EEEEEEECCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence            45678999984  3344445567899888877664 44677777766666543   22356788999875

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd00876 Ras Ras family

Probab=88.60  E-value=4.4  Score=32.34  Aligned_cols=66  Identities=14%  Similarity=-0.001  Sum_probs=45.8

Q ss_pred             CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc---CCCceEEEEecccCCc
Q 047623          167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD---GIRDIKMVVNRVRTDM  232 (340)
Q Consensus       167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~~  232 (340)
                      +.+.++|+|+..  .......+..+|.++++...+ ..++..+..+...+...   ....+.+|.|+.+...
T Consensus        47 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  118 (160)
T cd00876          47 YTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLEN  118 (160)
T ss_pred             EEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccc
Confidence            778899999954  334455667899988888764 45666666666655542   2356789999998653

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>PRK07429 phosphoribulokinase; Provisional

Probab=88.58  E-value=0.82  Score=42.36  Aligned_cols=38  Identities=29%  Similarity=0.310  Sum_probs=27.5

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      ..-+|+|. +..|+||||++..|+..+...+  +.++.+|-
T Consensus         7 ~~~IIgI~-G~SGSGKSTla~~L~~ll~~~~--~~vi~~Dd   44 (327)
T PRK07429          7 RPVLLGVA-GDSGCGKTTFLRGLADLLGEEL--VTVICTDD   44 (327)
T ss_pred             CCEEEEEE-CCCCCCHHHHHHHHHhHhccCc--eEEEEecc
Confidence            34577777 7789999999999998886543  44455553

>cd04109 Rab28 Rab28 subfamily

Probab=88.55  E-value=3.6  Score=35.43  Aligned_cols=66  Identities=12%  Similarity=0.008  Sum_probs=45.4

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcCC-----CceEEEEecccCC
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDGI-----RDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~~-----~~~~vviN~~~~~  231 (340)
                      .+.+.|+|+++..  .......+..+|.++++.+.+ ..++..+....+.+.....     ..+.+|.|+.+-.
T Consensus        49 ~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~  122 (215)
T cd04109          49 NVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLE  122 (215)
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccc
Confidence            3678899999853  233344567899999998875 4577777777777765321     2467889998853

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=88.53  E-value=3.8  Score=33.84  Aligned_cols=65  Identities=14%  Similarity=0.084  Sum_probs=44.1

Q ss_pred             CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCC-ChhhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623          167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTP-DITSLRDADRVTGLLECD---GIRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~  231 (340)
                      +.+.|+|+++..  .......+..+|.++++... +..++..+..+.+.+.+.   ....+.+|.|+.+-.
T Consensus        50 ~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~  120 (172)
T cd04141          50 ALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLE  120 (172)
T ss_pred             EEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhh
Confidence            677899998854  23334556779988888776 456677777666666542   224678899998753

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=88.52  E-value=0.48  Score=38.84  Aligned_cols=30  Identities=30%  Similarity=0.384  Sum_probs=22.7

Q ss_pred             EcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           56 TSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        56 ~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      ..+-.|+||||+|..|+..+   |  ..++|.|.-
T Consensus         3 l~G~~GsGKSTla~~l~~~l---~--~~~v~~D~~   32 (163)
T TIGR01313         3 LMGVAGSGKSTIASALAHRL---G--AKFIEGDDL   32 (163)
T ss_pred             EECCCCCCHHHHHHHHHHhc---C--CeEEeCccc
Confidence            34778999999999999876   3  445677754

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PRK01184 hypothetical protein; Provisional

Probab=88.50  E-value=0.67  Score=38.87  Aligned_cols=31  Identities=19%  Similarity=0.414  Sum_probs=20.9

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEec
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDA   87 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~   87 (340)
                      |++|.++ +..|+||||++. +   +.+.|..+  +|+
T Consensus         1 ~~~i~l~-G~~GsGKsT~a~-~---~~~~g~~~--i~~   31 (184)
T PRK01184          1 MKIIGVV-GMPGSGKGEFSK-I---AREMGIPV--VVM   31 (184)
T ss_pred             CcEEEEE-CCCCCCHHHHHH-H---HHHcCCcE--EEh
Confidence            3566666 778899999764 3   44567666  454

>cd01898 Obg Obg subfamily

Probab=88.36  E-value=2.6  Score=34.27  Aligned_cols=64  Identities=19%  Similarity=0.234  Sum_probs=42.7

Q ss_pred             CCEEEEcCCCCC---------CHHHHHHHhcCCeEEEEeCCChh--hHHHHHHHHHHHHhcC----CCceEEEEecccC
Q 047623          167 PDFILIDCPAGI---------DAGFITAITPANEAVLVTTPDIT--SLRDADRVTGLLECDG----IRDIKMVVNRVRT  230 (340)
Q Consensus       167 ~D~VIiD~~~~~---------~~~~~~~l~~ad~viiv~~~~~~--s~~~~~~~~~~l~~~~----~~~~~vviN~~~~  230 (340)
                      ..+.++|+|+..         .......+..+|.++++++....  +........+.+....    ...+.+|+|+.+-
T Consensus        48 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl  126 (170)
T cd01898          48 RSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDL  126 (170)
T ss_pred             CeEEEEecCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhc
Confidence            378899999942         11122334569999999988754  5666666666665432    2456789999985

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=88.27  E-value=0.92  Score=38.60  Aligned_cols=34  Identities=35%  Similarity=0.403  Sum_probs=25.7

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      ||.+|+++ +.-|+||||++..|+.    .|.  -++|+|.
T Consensus         1 ~~~~i~lt-G~~gsGKst~~~~l~~----~g~--~~i~~D~   34 (194)
T PRK00081          1 MMLIIGLT-GGIGSGKSTVANLFAE----LGA--PVIDADA   34 (194)
T ss_pred             CCeEEEEE-CCCCCCHHHHHHHHHH----cCC--EEEEecH
Confidence            45788888 6778999999987765    465  4588885

>cd04142 RRP22 RRP22 subfamily

Probab=87.99  E-value=5  Score=34.14  Aligned_cols=65  Identities=14%  Similarity=0.059  Sum_probs=43.8

Q ss_pred             CCEEEEcCCCCC------CH----HHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc-----CCCceEEEEecccC
Q 047623          167 PDFILIDCPAGI------DA----GFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD-----GIRDIKMVVNRVRT  230 (340)
Q Consensus       167 ~D~VIiD~~~~~------~~----~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~-----~~~~~~vviN~~~~  230 (340)
                      +.+.|+|+|+..      ..    .....+..||.++++.+.. ..++..+....+.+...     ....+.+|.|+.+-
T Consensus        49 ~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl  128 (198)
T cd04142          49 YDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQ  128 (198)
T ss_pred             EEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccc
Confidence            778899998731      11    1223467899999999884 55677777666666542     22467899999886


Q ss_pred             C
Q 047623          231 D  231 (340)
Q Consensus       231 ~  231 (340)
                      .
T Consensus       129 ~  129 (198)
T cd04142         129 Q  129 (198)
T ss_pred             c
Confidence            4

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>PRK13695 putative NTPase; Provisional

Probab=87.92  E-value=1.2  Score=37.07  Aligned_cols=30  Identities=40%  Similarity=0.508  Sum_probs=24.5

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEE
Q 047623           53 VVITSGKGGVGKTTTTANVGLSLARLGFSVV   83 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~Vl   83 (340)
                      |+++ +..|+||||++..++..+...|.++.
T Consensus         3 i~lt-G~~G~GKTTll~~i~~~l~~~G~~~~   32 (174)
T PRK13695          3 IGIT-GPPGVGKTTLVLKIAELLKEEGYKVG   32 (174)
T ss_pred             EEEE-CCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence            4555 66899999999999988887788764

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=87.92  E-value=0.67  Score=38.86  Aligned_cols=31  Identities=42%  Similarity=0.573  Sum_probs=23.3

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      +|+++ +..|+||||++.-|+.    .|..|  +|+|.
T Consensus         1 ii~it-G~~gsGKst~~~~l~~----~g~~~--i~~D~   31 (179)
T cd02022           1 IIGLT-GGIGSGKSTVAKLLKE----LGIPV--IDADK   31 (179)
T ss_pred             CEEEE-CCCCCCHHHHHHHHHH----CCCCE--EecCH
Confidence            35666 7889999999988776    57655  77774

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>PRK03839 putative kinase; Provisional

Probab=87.87  E-value=0.67  Score=38.74  Aligned_cols=30  Identities=40%  Similarity=0.617  Sum_probs=21.4

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      |.++ +-.|+||||++..||..+   |.  -.+|+|
T Consensus         3 I~l~-G~pGsGKsT~~~~La~~~---~~--~~id~d   32 (180)
T PRK03839          3 IAIT-GTPGVGKTTVSKLLAEKL---GY--EYVDLT   32 (180)
T ss_pred             EEEE-CCCCCCHHHHHHHHHHHh---CC--cEEehh
Confidence            4455 778999999998888876   33  335655

>cd01868 Rab11_like Rab11-like

Probab=87.81  E-value=4.9  Score=32.53  Aligned_cols=65  Identities=17%  Similarity=-0.006  Sum_probs=44.5

Q ss_pred             CCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCC-ChhhHHHHHHHHHHHHhcCC--CceEEEEecccCC
Q 047623          167 PDFILIDCPAGID--AGFITAITPANEAVLVTTP-DITSLRDADRVTGLLECDGI--RDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~~~--~~~~vviN~~~~~  231 (340)
                      +.+.++|+|+...  ......+..++.++++... +..+...+.+.++.+.+...  ..+.+|.|+.+-.
T Consensus        52 ~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~  121 (165)
T cd01868          52 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLR  121 (165)
T ss_pred             EEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence            6778999988542  2334456778978877766 46677777777777765432  3577889998853

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=87.77  E-value=1  Score=43.19  Aligned_cols=66  Identities=20%  Similarity=0.248  Sum_probs=46.3

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhh-HHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITS-LRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s-~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      .+.+.++|+|+...  ..+...+..+|.++++++.+... ...+.+.+..+...+.+.+.+++|+.+..
T Consensus        79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~  147 (406)
T TIGR03680        79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLV  147 (406)
T ss_pred             ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccC
Confidence            36789999998532  22344456689999999987543 44555666666666777788999999864

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=87.77  E-value=14  Score=36.39  Aligned_cols=29  Identities=34%  Similarity=0.646  Sum_probs=22.2

Q ss_pred             CCCCEEEEEEcCCCCCcHHHHHHHHHHHHH
Q 047623           47 GETPRVVVITSGKGGVGKTTTTANVGLSLA   76 (340)
Q Consensus        47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la   76 (340)
                      ++-++-+.++ +.-|+||||+|.-+|..+-
T Consensus        32 ~ri~ha~Lf~-Gp~G~GKTT~ArilAk~Ln   60 (491)
T PRK14964         32 NKIPQSILLV-GASGVGKTTCARIISLCLN   60 (491)
T ss_pred             CCCCceEEEE-CCCCccHHHHHHHHHHHHc
Confidence            3445567776 6678899999999998765

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.75  E-value=7.7  Score=33.20  Aligned_cols=112  Identities=11%  Similarity=0.001  Sum_probs=78.2

Q ss_pred             CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCC-ChhhHHHHHHHHHHHHhcCC--CceEEEEecccCCcccccccccH
Q 047623          167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTP-DITSLRDADRVTGLLECDGI--RDIKMVVNRVRTDMIKGEDMMSV  241 (340)
Q Consensus       167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~~~--~~~~vviN~~~~~~~~~~~~~~~  241 (340)
                      .-.=|.|+++.-  -..+.+....|+.+++|..- +..|..+....++.++++.-  -...+|-|+++-+...       
T Consensus        61 i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R-------  133 (207)
T KOG0078|consen   61 IKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKR-------  133 (207)
T ss_pred             EEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccc-------
Confidence            455788998854  44566777889988888766 56788888888888887543  3566788998754311       


Q ss_pred             HHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCCC--HHHHHHHHHHHHHHhcccc
Q 047623          242 LDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPT--LAGLAFEQAAWRLVEQDSM  298 (340)
Q Consensus       242 ~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~s--~~~~~~~~la~~i~~~~~~  298 (340)
                                   .||....-.-|...|.++++..++.  ..-.+|.+||++|..+.+.
T Consensus       134 -------------~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~La~~i~~k~~~  179 (207)
T KOG0078|consen  134 -------------QVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSLARDILQKLED  179 (207)
T ss_pred             -------------cccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHHHHHHHhhcch
Confidence                         3444443344555577777766554  4788999999999987655

>cd01865 Rab3 Rab3 subfamily

Probab=87.72  E-value=4.5  Score=32.91  Aligned_cols=65  Identities=9%  Similarity=0.005  Sum_probs=44.0

Q ss_pred             CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC--CCceEEEEecccCC
Q 047623          167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG--IRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~~  231 (340)
                      +.+.++|+++..  .......+..+|.++++.+.. ..++..+...++.+....  ...+.+|.|+.+-.
T Consensus        50 ~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~  119 (165)
T cd01865          50 VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDME  119 (165)
T ss_pred             EEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccC
Confidence            567899998843  223344567799888887753 566776777666665533  23578999998753

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>PRK13948 shikimate kinase; Provisional

Probab=87.71  E-value=1.2  Score=37.64  Aligned_cols=32  Identities=28%  Similarity=0.319  Sum_probs=23.1

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      .|.++ +--|+||||++..||..|   |.+  +||+|.
T Consensus        12 ~I~Li-G~~GsGKSTvg~~La~~l---g~~--~iD~D~   43 (182)
T PRK13948         12 WVALA-GFMGTGKSRIGWELSRAL---MLH--FIDTDR   43 (182)
T ss_pred             EEEEE-CCCCCCHHHHHHHHHHHc---CCC--EEECCH
Confidence            33343 677999999999888876   444  468883

>COG1855 ATPase (PilT family) [General function prediction only]

Probab=87.67  E-value=0.62  Score=44.46  Aligned_cols=35  Identities=26%  Similarity=0.343  Sum_probs=28.0

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEe
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAID   86 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD   86 (340)
                      .-|.|. +..|.||||+|..||.+++.+|+=|=-++
T Consensus       264 eGILIA-G~PGaGKsTFaqAlAefy~~~GkiVKTmE  298 (604)
T COG1855         264 EGILIA-GAPGAGKSTFAQALAEFYASQGKIVKTME  298 (604)
T ss_pred             cceEEe-cCCCCChhHHHHHHHHHHHhcCcEEeecc
Confidence            446665 77899999999999999999998554443

>cd04175 Rap1 Rap1 subgroup

Probab=87.64  E-value=6.1  Score=31.93  Aligned_cols=66  Identities=12%  Similarity=0.010  Sum_probs=43.6

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD---GIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~  231 (340)
                      .+.+.|+|+++..  .......+..+|.++++...+ ..+...+....+.+...   .-..+.+|.|+.+-.
T Consensus        48 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  119 (164)
T cd04175          48 QCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE  119 (164)
T ss_pred             EEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcch
Confidence            3677899999853  344455567799888887653 45566666666655432   123577999998853

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=87.51  E-value=1  Score=37.55  Aligned_cols=38  Identities=24%  Similarity=0.261  Sum_probs=31.4

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEecCCC
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLA-RLGFSVVAIDADVG   90 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la-~~g~~VlliD~D~~   90 (340)
                      .+.++ +-.|+|||.+|..||..+- ....+.+.+|+...
T Consensus         5 ~~ll~-GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~   43 (171)
T PF07724_consen    5 NFLLA-GPSGVGKTELAKALAELLFVGSERPLIRIDMSEY   43 (171)
T ss_dssp             EEEEE-SSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGH
T ss_pred             EEEEE-CCCCCCHHHHHHHHHHHhccCCccchHHHhhhcc
Confidence            44444 7789999999999999999 67788999998765

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=87.51  E-value=1.4  Score=41.59  Aligned_cols=68  Identities=25%  Similarity=0.294  Sum_probs=48.4

Q ss_pred             CCCCEEEEcCCCCCCHH--HHHHHhcCCeEEEEeCCChhhHH-------HHHHHHHHHHhcCCCceEEEEecccCCc
Q 047623          165 GSPDFILIDCPAGIDAG--FITAITPANEAVLVTTPDITSLR-------DADRVTGLLECDGIRDIKMVVNRVRTDM  232 (340)
Q Consensus       165 ~~~D~VIiD~~~~~~~~--~~~~l~~ad~viiv~~~~~~s~~-------~~~~~~~~l~~~~~~~~~vviN~~~~~~  232 (340)
                      +.|.+.|+|||+.-+..  +......||..|+|+..+....+       .+++.+-..+..|++.+.+.+|+.+.-.
T Consensus        83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~  159 (428)
T COG5256          83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVS  159 (428)
T ss_pred             CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccc
Confidence            36899999999954332  23345789999999988777422       3344455555678899999999988654

>cd01889 SelB_euk SelB subfamily

Probab=87.46  E-value=2.1  Score=36.03  Aligned_cols=65  Identities=15%  Similarity=0.164  Sum_probs=39.2

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      .+.+.++|+|+...  .........+|.+++++......-....+........+. .+.+++|+.+..
T Consensus        67 ~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~-~~iiv~NK~Dl~  133 (192)
T cd01889          67 NLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCK-KLIVVLNKIDLI  133 (192)
T ss_pred             CceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCC-CEEEEEECcccC
Confidence            58999999998632  112233456899999988764221222222333333343 577999999853

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=87.39  E-value=1.2  Score=38.34  Aligned_cols=33  Identities=33%  Similarity=0.483  Sum_probs=24.4

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      ...+|+++ +.-|+||||++.-|+.    .|..|  +|+|
T Consensus         4 ~~~~igit-G~igsGKSt~~~~l~~----~g~~v--~d~D   36 (208)
T PRK14731          4 LPFLVGVT-GGIGSGKSTVCRFLAE----MGCEL--FEAD   36 (208)
T ss_pred             CCEEEEEE-CCCCCCHHHHHHHHHH----CCCeE--Eecc
Confidence            34678887 7789999998876664    57655  7777

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=87.30  E-value=2.6  Score=40.21  Aligned_cols=85  Identities=16%  Similarity=0.168  Sum_probs=64.7

Q ss_pred             CCCEEEEcCCCC--CCHHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHH
Q 047623          166 SPDFILIDCPAG--IDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLD  243 (340)
Q Consensus       166 ~~D~VIiD~~~~--~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~  243 (340)
                      ++-+=|+|||+.  .+..+...|.++|..++|++....--..+..+.+.++-.+.+ +..++|+.++.....-.  -+.+
T Consensus        80 ~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iP-I~TFiNKlDR~~rdP~E--LLdE  156 (528)
T COG4108          80 DCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIP-IFTFINKLDREGRDPLE--LLDE  156 (528)
T ss_pred             CeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCc-eEEEeeccccccCChHH--HHHH
Confidence            355668899995  467788899999999999998777777788888888876665 55788999987543333  3778


Q ss_pred             HHHHhCCcee
Q 047623          244 IQEMLGLALL  253 (340)
Q Consensus       244 i~~~~g~~v~  253 (340)
                      +++.+++...
T Consensus       157 iE~~L~i~~~  166 (528)
T COG4108         157 IEEELGIQCA  166 (528)
T ss_pred             HHHHhCccee
Confidence            8888886543

>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]

Probab=87.30  E-value=0.54  Score=43.17  Aligned_cols=42  Identities=24%  Similarity=0.309  Sum_probs=37.4

Q ss_pred             CCEEEEEEcC-CCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           49 TPRVVVITSG-KGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~-kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      ...+|+|.|. -||+|||-++.-||..|.++|.++.++.=++.
T Consensus        46 pvPVI~VGNltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGYg   88 (336)
T COG1663          46 PVPVICVGNLTVGGTGKTPVVIWLAEALQARGVRVGVVSRGYG   88 (336)
T ss_pred             CCCEEEEccEEECCCCcCHHHHHHHHHHHhcCCeeEEEecCcC
Confidence            3578888774 69999999999999999999999999988876

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=87.26  E-value=0.9  Score=37.81  Aligned_cols=32  Identities=22%  Similarity=0.298  Sum_probs=24.7

Q ss_pred             EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           55 ITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        55 v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      +..+..|+|||++|.+++..   .|.+++++....
T Consensus         3 li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~~   34 (169)
T cd00544           3 LVTGGARSGKSRFAERLAAE---LGGPVTYIATAE   34 (169)
T ss_pred             EEECCCCCCHHHHHHHHHHh---cCCCeEEEEccC
Confidence            34477899999999999865   677898885543

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=87.25  E-value=0.79  Score=44.42  Aligned_cols=37  Identities=19%  Similarity=0.272  Sum_probs=31.4

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      +-+.++ +..|+|||+++..+|..+.+.|.+|+.+.++
T Consensus       142 npl~L~-G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~  178 (445)
T PRK12422        142 NPIYLF-GPEGSGKTHLMQAAVHALRESGGKILYVRSE  178 (445)
T ss_pred             ceEEEE-cCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence            445566 5679999999999999999889999999875

>PLN03210 Resistant to P

Probab=87.22  E-value=1  Score=49.12  Aligned_cols=39  Identities=41%  Similarity=0.389  Sum_probs=29.5

Q ss_pred             CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEe
Q 047623           47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAID   86 (340)
Q Consensus        47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD   86 (340)
                      ....++|+|+ +.||+||||+|..++..+...-.-.+.+|
T Consensus       204 ~~~~~vvgI~-G~gGiGKTTLA~~l~~~l~~~F~g~vfv~  242 (1153)
T PLN03210        204 SEEVRMVGIW-GSSGIGKTTIARALFSRLSRQFQSSVFID  242 (1153)
T ss_pred             cCceEEEEEE-cCCCCchHHHHHHHHHHHhhcCCeEEEee
Confidence            3456889988 88999999999999988876533334444

syringae 6; Provisional

>PRK07560 elongation factor EF-2; Reviewed

Probab=87.20  E-value=1.1  Score=46.46  Aligned_cols=65  Identities=17%  Similarity=0.215  Sum_probs=48.1

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      ++-+.+||||+..+  .....++..+|.+++|++....-......+.+.+...+.+ ..+++|+.+..
T Consensus        86 ~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~-~iv~iNK~D~~  152 (731)
T PRK07560         86 EYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVK-PVLFINKVDRL  152 (731)
T ss_pred             cEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCC-eEEEEECchhh
Confidence            47789999999654  3456678899999999987665455566677766555665 46889999864

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=87.17  E-value=0.73  Score=37.80  Aligned_cols=21  Identities=38%  Similarity=0.490  Sum_probs=15.7

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHH
Q 047623           53 VVITSGKGGVGKTTTTANVGLS   74 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~   74 (340)
                      |+|+ +.-|+||||++..|+..
T Consensus         2 I~i~-G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    2 IVIT-GGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             EEEE---TTSHHHHHHHHHHHH
T ss_pred             EEEE-CCCCCCHHHHHHHHHHc
Confidence            5666 55678999999999976

>cd04136 Rap_like Rap-like subfamily

Probab=87.12  E-value=7.5  Score=31.18  Aligned_cols=64  Identities=16%  Similarity=0.012  Sum_probs=43.1

Q ss_pred             CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC---CCceEEEEecccC
Q 047623          167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG---IRDIKMVVNRVRT  230 (340)
Q Consensus       167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~---~~~~~vviN~~~~  230 (340)
                      +.+.|+|+++..  .......+..+|.++++...+ ..+++.+....+.+....   ...+.+|.|+.+-
T Consensus        49 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  118 (163)
T cd04136          49 CMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDL  118 (163)
T ss_pred             EEEEEEECCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence            566789999853  333344567799888887654 566777777776665431   2356688999875

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=87.07  E-value=1  Score=38.65  Aligned_cols=35  Identities=29%  Similarity=0.237  Sum_probs=25.6

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      +.+|+++ +.-|+||||++..|+..   .|..  ++|+|.-
T Consensus         6 ~~~IglT-G~iGsGKStv~~~l~~~---lg~~--vidaD~i   40 (204)
T PRK14733          6 TYPIGIT-GGIASGKSTATRILKEK---LNLN--VVCADTI   40 (204)
T ss_pred             eEEEEEE-CCCCCCHHHHHHHHHHH---cCCe--EEeccHH
Confidence            4678888 66789999998777642   3766  5888854

>PRK14530 adenylate kinase; Provisional

Probab=87.02  E-value=0.75  Score=39.75  Aligned_cols=24  Identities=25%  Similarity=0.475  Sum_probs=19.5

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHH
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSL   75 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~l   75 (340)
                      +.|.|. +-.|+||||++..||..+
T Consensus         4 ~~I~i~-G~pGsGKsT~~~~La~~~   27 (215)
T PRK14530          4 PRILLL-GAPGAGKGTQSSNLAEEF   27 (215)
T ss_pred             CEEEEE-CCCCCCHHHHHHHHHHHh
Confidence            456666 678999999999998776

>cd04113 Rab4 Rab4 subfamily

Probab=86.95  E-value=5.5  Score=32.06  Aligned_cols=66  Identities=14%  Similarity=-0.051  Sum_probs=44.2

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC--CCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG--IRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~~  231 (340)
                      .+.+.|+|+|+..  .......+..+|.++++...+ ..+...+..+++.+....  ...+.+|.|+.+-.
T Consensus        48 ~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~  118 (161)
T cd04113          48 RVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLA  118 (161)
T ss_pred             EEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcc
Confidence            3678899999853  233345567899999888775 456666666666654322  23577888998754

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=86.93  E-value=5.4  Score=38.20  Aligned_cols=113  Identities=14%  Similarity=0.119  Sum_probs=69.1

Q ss_pred             HHHHHh-cCCeEEEEeCCC-------hhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623          182 FITAIT-PANEAVLVTTPD-------ITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL  253 (340)
Q Consensus       182 ~~~~l~-~ad~viiv~~~~-------~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~  253 (340)
                      +..++. ++|..++|++.+       ..-...-.++++.+.+.+. .+.+|+|..++.......  -.+++.+.++.+++
T Consensus       137 T~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~~~k-PfiivlN~~dp~~~et~~--l~~~l~eky~vpvl  213 (492)
T TIGR02836       137 TRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKELNK-PFIILLNSTHPYHPETEA--LRQELEEKYDVPVL  213 (492)
T ss_pred             HHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHhcCC-CEEEEEECcCCCCchhHH--HHHHHHHHhCCceE
Confidence            567777 899988888543       3445555788888887665 466899999865322222  23467788898865


Q ss_pred             E--EecCChH-HH---HHHhcCCceEee-----------CCCCHHHHHHHHHHHHHHhccc
Q 047623          254 G--VIPEDSE-VI---RSTNRGYPLVLN-----------KPPTLAGLAFEQAAWRLVEQDS  297 (340)
Q Consensus       254 ~--~Ip~d~~-~~---~a~~~g~~v~~~-----------~~~s~~~~~~~~la~~i~~~~~  297 (340)
                      .  +...... +.   +.....=|+.+.           .+.....+.+.+.+++.+....
T Consensus       214 ~v~c~~l~~~DI~~il~~vL~EFPv~Ei~~~~P~Wve~L~~~Hwlk~~~~~~i~~~~~~i~  274 (492)
T TIGR02836       214 AMDVESMRESDILSVLEEVLYEFPILEINIDLPSWVEVLDENHWLKENFQSSVKETVKDVY  274 (492)
T ss_pred             EEEHHHcCHHHHHHHHHHHHhcCCceEEEeeCchHHHhcCCCchHHHHHHHHHHHHHHhhh
Confidence            2  2222222 22   333333344433           4456778888888887777643

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	340
3q9l_A	260	The Structure Of The Dimeric E.Coli Mind-Atp Comple		8e-26
1ion_A	243	The Septum Site-Determining Protein Mind Complexed		1e-13
1hyq_A	263	Mind Bacterial Cell Division Regulator From A. Fulg		7e-13
1g3q_A	237	Crystal Structure Analysis Of Pyrococcus Furiosus C		2e-11

>pdb|3Q9L|A Chain A, The Structure Of The Dimeric E.Coli Mind-Atp Complex Length = 260

Iteration: 1
 Score =  114 bits (285), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 72/199 (36%), Positives = 118/199 (59%), Gaps = 14/199 (7%)
Query: 106 YTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEG 165
           Y  V V+ GD  L+QAL++DKR  N  +L  S+ R K  L   G A   V++ LK+    
Sbjct: 58  YDFVNVIQGDATLNQALIKDKRTENLYILPASQTRDKDALTREGVA--KVLDDLKAM--- 112
Query: 166 SPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLEC------DGIR 219
             +FI+ D PAGI+ G + A+  A+EA++ T P+++S+RD+DR+ G+L        +G  
Sbjct: 113 DFEFIVCDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEE 172
Query: 220 DIK--MVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKP 277
            IK  +++ R     +   DM+S+ D+ E+L + L+GVIPED  V+R++N+G P++L+  
Sbjct: 173 PIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVILDIN 232
Query: 278 PTLAGLAFEQAAWRLVEQD 296
              AG A+     RL+ ++
Sbjct: 233 AD-AGKAYADTVERLLGEE 250

>pdb|1ION|A Chain A, The Septum Site-Determining Protein Mind Complexed With Mg-Adp From Pyrococcus Horikoshii Ot3 Length = 243

Iteration: 1
 Score = 73.6 bits (179), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/204 (30%), Positives = 100/204 (49%), Gaps = 26/204 (12%)
Query: 105 NYTVVEVLNGDCRLDQALVRDKRWS--------NFELLCISKPRSKLPLGFGGKALTWVV 156
           N T+ +VL GD +L+ A+   +  +        ++E +  + PR KLP          V+
Sbjct: 56  NITLHDVLAGDAKLEDAIYXTQFENVYILPGAVDWEHVIKADPR-KLP---------EVI 105
Query: 157 EALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECD 216
           ++LK    G  DFILIDCPAG+     +A     EA+LVT P+I+ L D  +V  +L+  
Sbjct: 106 KSLK----GKYDFILIDCPAGLQLRAXSAXLSGEEAILVTNPEISCLTDTXKVGXVLKKA 161
Query: 217 GIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNK 276
           G+  +  ++NR      + E  +     Q++  + LL VIPED  +   T  G P V  K
Sbjct: 162 GLAILGFILNRYG----RSERDIPPEAAQDVXDVPLLAVIPEDPVIREGTLEGIPAVKYK 217
Query: 277 PPTLAGLAFEQAAWRLVEQDSMKA 300
           P +    AF + A  + +   +KA
Sbjct: 218 PESKGAQAFIKLAEEVDKLAGIKA 241

>pdb|1HYQ|A Chain A, Mind Bacterial Cell Division Regulator From A. Fulgidus Length = 263

Iteration: 1
 Score = 71.2 bits (173), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 79/149 (53%), Gaps = 4/149 (2%)
Query: 166 SPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVV 225
           S D +L+D PAG++   + AI  A E +LV  P+I+S+ D  +   + E  G + + +VV
Sbjct: 110 STDILLLDAPAGLERSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVV 169
Query: 226 NRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAF 285
           NR+ T  I+    M+  +I+ +L   ++G+IPED EV R+   G P+VL  P + A  A 
Sbjct: 170 NRITTLGIE----MAKNEIEAILEAKVIGLIPEDPEVRRAAAYGKPVVLRSPNSPAARAI 225
Query: 286 EQAAWRLVEQDSMKAVMVEEEPKRRGFFS 314
            + A  +      K     +E K+ G  +
Sbjct: 226 VELANYIAGGAKKKVPAEVKEKKKEGALA 254

>pdb|1G3Q|A Chain A, Crystal Structure Analysis Of Pyrococcus Furiosus Cell Division Atpase Mind Length = 237

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 52/148 (35%), Positives = 76/148 (51%), Gaps = 18/148 (12%)
Query: 150 KALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRV 209
           + L  V+++LK +     DFILIDCPAG+    ++A+    EA+LVT P+I+ L D  +V
Sbjct: 99  RKLPEVIKSLKDKF----DFILIDCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKV 154
Query: 210 TGLLECDGIRDIKMVVNRV-RTDMI----KGEDMMSVLDIQEMLGLALLGVIPEDSEVIR 264
             +L+  G+  +  V+NR  R+D        ED+M V          LL VIPED  +  
Sbjct: 155 GIVLKKAGLAILGFVLNRYGRSDRDIPPEAAEDVMEV---------PLLAVIPEDPAIRE 205
Query: 265 STNRGYPLVLNKPPTLAGLAFEQAAWRL 292
            T  G P V  KP +    AF + A  +
Sbjct: 206 GTLEGIPAVKYKPESKGAKAFVKLAEEI 233

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	340
1hyq_A	263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	1e-109
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	1e-105
1g3q_A	237	MIND ATPase, cell division inhibitor; alpha-beta-a	1e-89
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	8e-83
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	4e-73
3fkq_A	373	NTRC-like two-domain protein; RER070207001320, str	5e-44
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	2e-19
3la6_A	286	Tyrosine-protein kinase WZC; P-loop protein, nucle	6e-19
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	2e-18
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	8e-16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-15
3ez9_A	403	Para; DNA binding, winged-HTH, partition, biosynth	3e-12
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	5e-12
3pg5_A	361	Uncharacterized protein; structural genomics, PSI-	5e-12
3ez2_A	398	Plasmid partition protein A; type IA, DNA binding,	7e-12
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	7e-11
2xj4_A	286	MIPZ; replication, cell division, ATPase, WACA; 1.	3e-10
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	6e-10
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	1e-09
3end_A	307	Light-independent protochlorophyllide reductase ir	5e-09
3cwq_A	209	Para family chromosome partitioning protein; alpha	8e-09
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	1e-07
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	1e-06
3iqw_A	334	Tail-anchored protein targeting factor GET3; ATPas	8e-06
2woo_A	329	ATPase GET3; tail-anchored, membrane protein, targ	9e-06
3zq6_A	324	Putative arsenical pump-driving ATPase; tail-ancho	3e-05
3ug7_A	349	Arsenical pump-driving ATPase; tail-anchored, memb	4e-05
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	4e-05
2afh_E	289	Nitrogenase iron protein 1; nitrogen fixation, iro	5e-05
2woj_A	354	ATPase GET3; tail-anchored, membrane protein, targ	5e-05
3io3_A	348	DEHA2D07832P; chaperone, membrane traffic, ATPase;	7e-05
3igf_A	374	ALL4481 protein; two-domained protein consisting o	4e-04

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10 Length = 263

 Score =  317 bits (814), Expect = e-109
 Identities = 86/270 (31%), Positives = 139/270 (51%), Gaps = 20/270 (7%)

Query: 51  RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVE 110
           R + + SGKGG GKTT TAN+G++LA+LG  V  +DAD+ + NL+L+LG+E     T+  
Sbjct: 3   RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLP-VTLQN 61

Query: 111 VLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWV----VEALKSRQEGS 166
           VL G+ R+D+A+                    +P G   + L       +E + ++   S
Sbjct: 62  VLAGEARIDEAIYVGPGGVKV-----------VPAGVSLEGLRKANPEKLEDVLTQIMES 110

Query: 167 PDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVN 226
            D +L+D PAG++   + AI  A E +LV  P+I+S+ D  +   + E  G + + +VVN
Sbjct: 111 TDILLLDAPAGLERSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVN 170

Query: 227 RVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFE 286
           R+ T        M+  +I+ +L   ++G+IPED EV R+   G P+VL  P + A  A  
Sbjct: 171 RITTLG----IEMAKNEIEAILEAKVIGLIPEDPEVRRAAAYGKPVVLRSPNSPAARAIV 226

Query: 287 QAAWRLVEQDSMKAVMVEEEPKRRGFFSFF 316
           + A  +      K     +E K+ G  +  
Sbjct: 227 ELANYIAGGAKKKVPAEVKEKKKEGALAKM 256

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A* Length = 260

 Score =  308 bits (792), Expect = e-105
 Identities = 102/264 (38%), Positives = 160/264 (60%), Gaps = 14/264 (5%)

Query: 51  RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVE 110
           R++V+TSGKGGVGKTT++A +   LA+ G   V ID  +GLRNLDL++G E RV Y  V 
Sbjct: 3   RIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRNLDLIMGCERRVVYDFVN 62

Query: 111 VLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFI 170
           V+ GD  L+QAL++DKR  N  +L  S+ R K  L   G  +  V++ LK+      +FI
Sbjct: 63  VIQGDATLNQALIKDKRTENLYILPASQTRDKDALTREG--VAKVLDDLKAMD---FEFI 117

Query: 171 LIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRD--------IK 222
           + D PAGI+ G + A+  A+EA++ T P+++S+RD+DR+ G+L     R           
Sbjct: 118 VCDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEH 177

Query: 223 MVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAG 282
           +++ R     +   DM+S+ D+ E+L + L+GVIPED  V+R++N+G P++L+     AG
Sbjct: 178 LLLTRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVILD-INADAG 236

Query: 283 LAFEQAAWRLVEQDSMKAVMVEEE 306
            A+     RL+ ++     + EE+
Sbjct: 237 KAYADTVERLLGEERPFRFIEEEK 260

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A* Length = 237

 Score =  267 bits (685), Expect = 1e-89
 Identities = 79/244 (32%), Positives = 134/244 (54%), Gaps = 11/244 (4%)

Query: 51  RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVE 110
           R++ I SGKGG GKTT TAN+ ++L   G  V+A+D D+ + NL L+LG+++    T+ +
Sbjct: 3   RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPD-VTLHD 61

Query: 111 VLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFI 170
           VL G+  ++ A +   ++ N  +L  +     + L    + L  V+++LK +     DFI
Sbjct: 62  VLAGEANVEDA-IYMTQFDNVYVLPGAVDWEHV-LKADPRKLPEVIKSLKDK----FDFI 115

Query: 171 LIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRT 230
           LIDCPAG+    ++A+    EA+LVT P+I+ L D  +V  +L+  G+  +  V+NR   
Sbjct: 116 LIDCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYG- 174

Query: 231 DMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAW 290
              + +  +     ++++ + LL VIPED  +   T  G P V  KP +    AF + A 
Sbjct: 175 ---RSDRDIPPEAAEDVMEVPLLAVIPEDPAIREGTLEGIPAVKYKPESKGAKAFVKLAE 231

Query: 291 RLVE 294
            + +
Sbjct: 232 EIEK 235

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum} Length = 245

 Score =  250 bits (640), Expect = 8e-83
 Identities = 54/250 (21%), Positives = 109/250 (43%), Gaps = 18/250 (7%)

Query: 51  RVVVITSGKGGVGKTTTTANVGLSLARLG-FSVVAIDADVGLRNLDLLLGLENRVNYTVV 109
           RV    S KGG G +   AN   +L++     V+A+D  +   +LD+ L         + 
Sbjct: 5   RVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPFGDLDMYLSGNTHS-QDLA 63

Query: 110 EVLNGDCRLDQALVRD---KRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGS 166
           ++ N   RLD++L+         + +L+       K+      + ++ ++    S     
Sbjct: 64  DISNASDRLDKSLLDTMVQHISPSLDLIPSPATFEKIVN-IEPERVSDLIHIAASFY--- 119

Query: 167 PDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRD--IKMV 224
            D+I++D  A ID   +  +   +E  +VTTP + SLR A ++  L +        I+++
Sbjct: 120 -DYIIVDFGASIDHVGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEII 178

Query: 225 VNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIR-STNRGYPLVLNKPPTLAGL 283
           +NR  T+       ++  +I++++G  +   IP+D + ++ S   G  ++   P +    
Sbjct: 179 LNRADTN-----SRITSDEIEKVIGRPISKRIPQDEDAMQESLLSGQSVLKVAPKSQLSK 233

Query: 284 AFEQAAWRLV 293
                A  L 
Sbjct: 234 TIVDWALHLN 243

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A* Length = 254

 Score =  226 bits (577), Expect = 4e-73
 Identities = 43/260 (16%), Positives = 95/260 (36%), Gaps = 28/260 (10%)

Query: 54  VITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLN 113
           +  +GKGGVGKTT  A +   +A     + A+D D     L   LGL     Y +  ++ 
Sbjct: 3   LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD-SCLGQTLGLSIEEAYAITPLIE 61

Query: 114 GDCRLDQALVRDKRWS------------------NFELLCISKPRSKLPLGFGGKALTWV 155
               + +                              L+ + + +         +  +++
Sbjct: 62  MKDEIREKTGDGGLLILNPKVDGDLDKYGRYIDDKIFLIRMGEIKKGGS-QCYCRENSFL 120

Query: 156 VEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLEC 215
              + +      + +++D  AGI+          +  + V  P++ S++    +  L   
Sbjct: 121 GSVVSALFLDKKEAVVMDMGAGIEHLTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGD 180

Query: 216 DGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLN 275
            GI+ ++ V+N+VR    +      + + +      +LG+IP +   I  + +G  +  +
Sbjct: 181 LGIKKVRYVINKVRNIKEEKLIKKHLPEDK------ILGIIPYNELFIELSLKGEEIWQS 234

Query: 276 KPPTLAGLAFEQAAWRLVEQ 295
             P  A +       +L  +
Sbjct: 235 TNP--AFVNLHDIYQKLRLE 252

>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale} Length = 373

 Score =  154 bits (390), Expect = 5e-44
 Identities = 30/226 (13%), Positives = 73/226 (32%), Gaps = 12/226 (5%)

Query: 46  AGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVN 105
             +   VV+ TS  GGVG +T  A   ++ A +G  V  ++ +      D+    E    
Sbjct: 139 ENDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE-QCGTTDVFFQAEGNAT 197

Query: 106 -----YTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALK 160
                Y++           ++ ++  +               L +      +  ++  + 
Sbjct: 198 MSDVIYSLKSRKANLLLKLESCIKQSQEGVSYFSSTKVALDILEIS--YADIDTLIGNI- 254

Query: 161 SRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRD 220
            +   + D I++D P  ++   +  ++ A   ++V      S     R    +      D
Sbjct: 255 -QGMDNYDEIIVDLPFSLEIEKLKLLSKAWRIIVVNDGSQLSNYKFMRAYESVVLLEQND 313

Query: 221 IKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRST 266
              ++  +     K  +  S  ++   + +  +G  P         
Sbjct: 314 DINIIRNMNMIYNKFSNKNS--EMLSNISIKTIGGAPRYEHATVRQ 357

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli} Length = 299

 Score = 85.8 bits (213), Expect = 2e-19
 Identities = 37/197 (18%), Positives = 74/197 (37%), Gaps = 26/197 (13%)

Query: 45  LAGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRN--LDLLLGLEN 102
           +      +++IT      GKT  ++ +   +A+    V+ IDAD  LR      L  + N
Sbjct: 99  MMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDAD--LRRGYSHNLFTVSN 156

Query: 103 RVNYTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLP-----LGFGGKALTWVVE 157
                + E L G   L++ +    +   F+++     R ++P     L      +  ++E
Sbjct: 157 EHG--LSEYLAGKDELNKVIQHFGK-GGFDVI----TRGQVPPNPSEL-LMRDRMRQLLE 208

Query: 158 ALKSRQEGSPDFILIDCP---AGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLE 214
                     D +++D P   A  DA  +        ++LV    + + ++       LE
Sbjct: 209 WANDHY----DLVIVDTPPMLAVSDAAVVGRS--VGTSLLVARFGLNTAKEVSLSMQRLE 262

Query: 215 CDGIRDIKMVVNRVRTD 231
             G+     ++N V   
Sbjct: 263 QAGVNIKGAILNGVIKR 279

>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli} Length = 286

 Score = 84.7 bits (210), Expect = 6e-19
 Identities = 40/196 (20%), Positives = 75/196 (38%), Gaps = 26/196 (13%)

Query: 45  LAGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRN--LDLLLGLEN 102
           +      V+++T     +G T   AN+   +++    V+ ID D  +R      LLG  N
Sbjct: 87  MMQAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCD--MRKGYTHELLGTNN 144

Query: 103 RVNYTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLP-----LGFGGKALTWVVE 157
                + E+L G   +  A       + F+L+    PR ++P     L    +    +V 
Sbjct: 145 VNG--LSEILIGQGDITTAAKPTSI-AKFDLI----PRGQVPPNPSEL-LMSERFAELVN 196

Query: 158 ALKSRQEGSPDFILIDCP---AGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLE 214
                     D +LID P   A  DA  +         ++V    + +L++ +      E
Sbjct: 197 WASKNY----DLVLIDTPPILAVTDAAIVGRH--VGTTLMVARYAVNTLKEVETSLSRFE 250

Query: 215 CDGIRDIKMVVNRVRT 230
            +GI    +++N +  
Sbjct: 251 QNGIPVKGVILNSIFR 266

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A* Length = 271

 Score = 82.7 bits (205), Expect = 2e-18
 Identities = 38/197 (19%), Positives = 77/197 (39%), Gaps = 26/197 (13%)

Query: 45  LAGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRN--LDLLLGLEN 102
                 + +VITS   G GK+T  AN+ ++ A+ G+  + +D D  +R      +  L N
Sbjct: 77  NPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGD--MRKPTQHYIFNLPN 134

Query: 103 RVNYTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLP-----LGFGGKALTWVVE 157
               +   +L        +++  +   + ++L        +P     L    +A   + +
Sbjct: 135 NEGLS--SLLLNWSTYQDSIISTEI-EDLDVL----TSGPIPPNPSEL-ITSRAFANLYD 186

Query: 158 ALKSRQEGSPDFILIDCP---AGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLE 214
            L        +F++ID P      DA   +        V V   +  +  +  +   L+E
Sbjct: 187 TLLMNY----NFVIIDTPPVNTVTDAQLFSKF--TGNVVYVVNSENNNKDEVKKGKELIE 240

Query: 215 CDGIRDIKMVVNRVRTD 231
             G + + +V+NR+  D
Sbjct: 241 ATGAKLLGVVLNRMPKD 257

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A* Length = 206

 Score = 74.3 bits (183), Expect = 8e-16
 Identities = 34/243 (13%), Positives = 69/243 (28%), Gaps = 50/243 (20%)

Query: 51  RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVE 110
           +V+   + KGG GKTT   N+  +L+R G+++  +D D     + L    +       V 
Sbjct: 2   KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTD---PQMSLTNWSKAGKAAFDVF 58

Query: 111 VLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFI 170
               +  +         +                                       DF 
Sbjct: 59  TAASEKDVYGIRKDLADY---------------------------------------DFA 79

Query: 171 LIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIR---DIKMVVNR 227
           ++D    +      A+  ++  ++  TP       A  V  +LE        + + ++ R
Sbjct: 80  IVDGAGSLSVITSAAVMVSDLVIIPVTPSPLDFSAAGSVVTVLEAQAYSRKVEARFLITR 139

Query: 228 VRTDMIKGEDMMSVLDIQEMLGLALL-GVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFE 286
                     +   +   +  G+      I +    ++S   G   V       A    E
Sbjct: 140 KIEMATMLNVLKESI---KDTGVKAFRTAITQRQVYVKSILDGDS-VFESSDGAAKGEIE 195

Query: 287 QAA 289
              
Sbjct: 196 ILT 198

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 77.2 bits (189), Expect = 1e-15
 Identities = 48/349 (13%), Positives = 105/349 (30%), Gaps = 117/349 (33%)

Query: 14  PLFPSKTIKPLKPFSSKSSIQSVLQWNRKPELAGETPRVVVITSGKGGVGKTTTTANVGL 73
            +F    +  L+P+     ++  L    +P        V++   G  G GK         
Sbjct: 124 QVFAKYNVSRLQPYLK---LRQALL-ELRPA-----KNVLI--DGVLGSGK--------- 163

Query: 74  SLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLN-GDCRLDQALVRDKRWSNFE 132
                  + VA+D      +  +   ++ ++ +     LN  +C   + ++        +
Sbjct: 164 -------TWVALDV---CLSYKVQCKMDFKIFW-----LNLKNCNSPETVLE-----MLQ 203

Query: 133 LLCISKPRSKLPLGFGGKALTWVVEALKSR------QEGSPDFILI-----DCPAGIDAG 181
            L      +          +   + ++++        +   + +L+     +     +A 
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN-AKAWNA- 261

Query: 182 F-ITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMS 240
           F ++        +L+TT      R             + D    ++   T  I  +    
Sbjct: 262 FNLSC------KILLTT------RFK----------QVTD---FLSAATTTHISLDHHSM 296

Query: 241 VLDIQEMLGLAL--LGVIPED-SEVIRSTNRGYPLVLNKPPTLAGLAFEQAA-----WRL 292
            L   E+  L L  L   P+D    + +TN   P  L+    +   +          W+ 
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTN---PRRLS----IIAESIRDGLATWDNWKH 349

Query: 293 VEQDSMKAVM---VEE-EPK--RRGFFSFFGLGVLAVTVGLEVGSVVFP 335
           V  D +  ++   +   EP   R+ F                    VFP
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRL----------------SVFP 382

>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A Length = 403

 Score = 66.3 bits (162), Expect = 3e-12
 Identities = 31/186 (16%), Positives = 60/186 (32%), Gaps = 37/186 (19%)

Query: 41  RKPELAGETPRVVVITSGKGGVGKTTTTANVGLSLA------RLGFSVVAIDAD------ 88
            K     ++P V+ + + KGGV KT +T  +  +L       R    ++ ID D      
Sbjct: 102 PKYRDIHKSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQASST 161

Query: 89  VGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNFE-LLCISKPRSKLPLGF 147
           + L +   +  +       ++  L+ +    + +      +    +  I  P S      
Sbjct: 162 MFLDHTHSIGSILETAAQAMLNNLDAETLRKEVIRP----TIVPGVDVI--PASIDDGFV 215

Query: 148 GGKALTWVVEALKSRQ-------------EGSPDFILIDCPAGIDAGFIT--AITPANEA 192
             +    V E L  +                  DFI ID    +         +  ++  
Sbjct: 216 ASQWRELVEEHLPGQNQYEILRRNIIDRVADDYDFIFIDTGPHL--DPFLLNGLAASDL- 272

Query: 193 VLVTTP 198
           +L  TP
Sbjct: 273 LLTPTP 278

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A* Length = 262

 Score = 64.2 bits (157), Expect = 5e-12
 Identities = 51/282 (18%), Positives = 90/282 (31%), Gaps = 85/282 (30%)

Query: 51  RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVE 110
             + + SGKGGVGK+T TA + +  AR G  V  +DAD    ++ +L GL N        
Sbjct: 19  SRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGPSIPILFGLRNA------- 71

Query: 111 VLNGDCRLDQALVRDKRW-----SNFELLCISKPRSKLPLGF----GGKALTW----VVE 157
                    +  V  +         + +  +S       + F        + W    +  
Sbjct: 72  ---------RIAVSAEGLEPVLTQKYGIKVMS-------MQFLLPKENTPVIWRGPLIAG 115

Query: 158 ALKSRQE------GSPDFILIDCPAGI-DAGFITAIT-----PANEAVLVTTPDITSLRD 205
            ++  +       G  D +LID P G  DA     +T          V+V+TP   +   
Sbjct: 116 MIR--EFLGRVAWGELDHLLIDLPPGTGDA----PLTVMQDAKPTGVVVVSTPQELTAVI 169

Query: 206 ADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVL------------------DIQEM 247
            ++   + E      + +V N            MS                     + + 
Sbjct: 170 VEKAINMAEETNTSVLGLVEN------------MSYFVCPNCGHKSYIFGEGKGESLAKK 217

Query: 248 LGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAA 289
             +     IP + E+I+  + G      +        F +  
Sbjct: 218 YNIGFFTSIPIEEELIKLADSGRIEEY-EKDWFESAPFLEHH 258

>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae} Length = 361

 Score = 64.8 bits (158), Expect = 5e-12
 Identities = 32/161 (19%), Positives = 46/161 (28%), Gaps = 36/161 (22%)

Query: 51  RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD-----------------VGLRN 93
           R +   + KGGVGKTT + NV    A  G  V+ +D D                 + L  
Sbjct: 2   RTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQCNATQLMLTEEQTESIYLDG 61

Query: 94  LDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRW-----------------SNFELLCI 136
           L+  +   N +  TV  +       +  +  +                    S  E L  
Sbjct: 62  LNDEVAERNSLAKTVYAIFVPLREGESQIAAEITPMRSERFGVDVLPGHPALSQIEDLMS 121

Query: 137 SKPRSKLPLGFGGKALTWVVEALKSRQEGSP--DFILIDCP 175
              +S L    G          L    E     D I  D  
Sbjct: 122 DSWQSALGRQTGPFRRIHWAGQLAHAMERDDRYDVIFFDVG 162

>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A Length = 398

 Score = 64.8 bits (158), Expect = 7e-12
 Identities = 32/183 (17%), Positives = 65/183 (35%), Gaps = 31/183 (16%)

Query: 41  RKPELAGETPRVVVITSGKGGVGKTTTTANVGLSLA------RLGFSVVAIDAD------ 88
            K         V+ I++ KGGV KT +T ++  ++            ++ ID D      
Sbjct: 99  PKYRDRYSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQSSAT 158

Query: 89  VGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRW-------SNFELLCIS---- 137
           + L +   +  +       +++ ++ +  L++ +V            ++ +   I+    
Sbjct: 159 MFLSHKHSIGIVNATSAQAMLQNVSREELLEEFIVPSV-VPGVDVMPASIDDAFIASDWR 217

Query: 138 --KPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLV 195
                              V++ LKS      DFIL+D    +DA    A+  AN  +  
Sbjct: 218 ELCNEHLPGQNIHAVLKENVIDKLKSDY----DFILVDSGPHLDAFLKNALASAN-ILFT 272

Query: 196 TTP 198
             P
Sbjct: 273 PLP 275

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes} Length = 298

 Score = 61.1 bits (149), Expect = 7e-11
 Identities = 27/146 (18%), Positives = 40/146 (27%), Gaps = 40/146 (27%)

Query: 51  RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD------VGLRNLDLLLGLE--- 101
            V++    KGGVGK+  +        +L   V+ ID D               L      
Sbjct: 37  IVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQATLTKD-------LAKTFKV 89

Query: 102 NRVNYTVVEVLNGDCRLDQALVRDKRW----SNFEL--------LCISKPRSKLPLGFGG 149
                   E L         +            F+L            +  S+L      
Sbjct: 90  ELPRVNFYEGLKNGNLASSIVHLTDNLDLIPGTFDLMLLPKLTRSWTFENESRL------ 143

Query: 150 KALTWVVEALKSRQEGSPDFILIDCP 175
             L  ++  LKS      D I+ID  
Sbjct: 144 --LATLLAPLKSDY----DLIIIDTV 163

>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A Length = 286

 Score = 59.4 bits (144), Expect = 3e-10
 Identities = 15/39 (38%), Positives = 22/39 (56%)

Query: 50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD 88
           RV+V+ + KGG GK+T   ++  +L   G  V  ID D
Sbjct: 4  TRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLD 42

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A Length = 267

 Score = 58.0 bits (141), Expect = 6e-10
 Identities = 31/147 (21%), Positives = 57/147 (38%), Gaps = 41/147 (27%)

Query: 50  PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD----------VGLRNLDLLLG 99
           P+++ I S KGGVGK+T+   +   L+     V+ ID D            +  L +   
Sbjct: 27  PKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQASITSYFYEKIEKLGI--- 82

Query: 100 LENRVNYTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPL-GFGGKALTWVVEA 158
             N   + + E+L  +  +D  ++     +N +L+    P S L L  F         + 
Sbjct: 83  --NFTKFNIYEILKENVDIDSTIINVD--NNLDLI----P-SYLTLHNFS-------EDK 126

Query: 159 LKSRQ----------EGSPDFILIDCP 175
           ++ +               D+I+ID  
Sbjct: 127 IEHKDFLLKTSLGTLYYKYDYIVIDTN 153

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A* Length = 257

 Score = 57.2 bits (139), Expect = 1e-09
 Identities = 39/165 (23%), Positives = 61/165 (36%), Gaps = 46/165 (27%)

Query: 48  ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD------VGLRNLDLLLGLE 101
              R + + + KGGVGKTTT  N+   LARLG  V+ +D D       G       LG+ 
Sbjct: 4   AKVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQGNATSG-------LGVR 56

Query: 102 NRVNYTVVEVLNGDCRLDQALVRDKRW---SNFEL------LCISKPRSKLPLGFGGKAL 152
                 V  +L G+         D      +  +L      L  +    +       +AL
Sbjct: 57  --AERGVYHLLQGEPLEGLVHPVDGFHLLPATPDLVGATVELAGAPTALR-------EAL 107

Query: 153 TWVVEALKSRQEGSPDFILIDCPAGIDAGFIT--AITPANEAVLV 195
                     ++   D +L+D P  +    +T  A+  A   V+V
Sbjct: 108 ----------RDEGYDLVLLDAPPSL--SPLTLNALAAAEG-VVV 139

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP} Length = 209

 Score = 54.0 bits (130), Expect = 8e-09
 Identities = 36/177 (20%), Positives = 59/177 (33%), Gaps = 36/177 (20%)

Query: 52  VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENR-VNYTVVE 110
           ++ + S KGGVGKTTT  ++   LA  G   + ID D    N       +   + + VV 
Sbjct: 2   IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGD---PNRSATGWGKRGSLPFKVV- 56

Query: 111 VLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFI 170
               D R             ++ + I             +     +EAL        D +
Sbjct: 57  ----DERQAAKYAPK-----YQNIVIDTQ---------ARPEDEDLEALAD----GCDLL 94

Query: 171 LIDC---PAGIDAGF-----ITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIR 219
           +I        +DA       +  +      +L+T       +D D    LL   G+ 
Sbjct: 95  VIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPPYPSKDGDEARQLLTTAGLP 151

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* Length = 262

 Score = 51.2 bits (122), Expect = 1e-07
 Identities = 35/229 (15%), Positives = 80/229 (34%), Gaps = 31/229 (13%)

Query: 49  TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTV 108
              ++V+  G  G GKTT T   G  L    + V  ++ D G++ L     ++ R   TV
Sbjct: 12  MASMIVVFVGTAGSGKTTLTGEFGRYL-EDNYKVAYVNLDTGVKELPYEPSIDVREFVTV 70

Query: 109 VEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPD 168
            E++      + A+       +++ L               +     +  +   ++ + D
Sbjct: 71  EEIMREGYGPNGAI-----VESYDRLM--------------EKFNEYLNKILRLEKEN-D 110

Query: 169 FILIDCPAGIDA----GFITAITPA-NEAVLVTTPDITSLRDADRVTGLLECDGIRDIKM 223
           ++LID P  ++      F   +       ++V   D   L+  +    +     + D+++
Sbjct: 111 YVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRL 170

Query: 224 VVNRV----RTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNR 268
               +    + D++  E+        E +   L   +  D  +      
Sbjct: 171 GATTIPALNKVDLLSEEEKERHRKYFEDID-YLTARLKLDPSMQGLMAY 218

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A* Length = 589

 Score = 49.2 bits (117), Expect = 1e-06
 Identities = 41/240 (17%), Positives = 71/240 (29%), Gaps = 53/240 (22%)

Query: 50  PRVVVITSGKGGVGKTTTTANVGLSLARLGFSV--------------------------- 82
           P  +  T GKGGVGKT+ +    + LA  G  V                           
Sbjct: 8   PPYLFFT-GKGGVGKTSISCATAIRLAEQGKRVLLVSTDPASNVGQVFSQTIGNTIQAIA 66

Query: 83  -------VAIDADVGLRNL------DLLLGLENRVNYTVVEVLNGDCRLDQA-------L 122
                  + ID     +         +   L + V  ++ E L+G C  + A       L
Sbjct: 67  SVPGLSALEIDPQAAAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGL 126

Query: 123 VRDKRWSN-FELL---CISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGI 178
           + D      F+ +         +   L   G   +++    +      P   L       
Sbjct: 127 LTDASLLTRFDHIIFDTAPTGHTIRLLQLPGAWSSFIDSNPEGASCLGPMAGLEKQREQY 186

Query: 179 DAGFITAITPANEAV-LVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGED 237
                    P    + LV     ++L++  R    L   G+++  +V+N V        D
Sbjct: 187 AYAVEALSDPKRTRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLPKTEAAND 246

>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A* Length = 334

 Score = 46.1 bits (109), Expect = 8e-06
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 45  LAGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRV 104
           L   + R + +  GKGGVGKTTT+ ++ + LA++  SV+ +  D    NL      +   
Sbjct: 11  LDQRSLRWIFVG-GKGGVGKTTTSCSLAIQLAKVRRSVLLLSTD-PAHNLSDAFSQKFGK 68

Query: 105 NYTVVEVLNG 114
              +VE  + 
Sbjct: 69  EARLVEGFDN 78

>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe} Length = 329

 Score = 45.9 bits (109), Expect = 9e-06
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 45  LAGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLE 101
           L   + + + +  GKGGVGKTTT+ ++ + ++++  SV+ I  D    NL    G +
Sbjct: 14  LEQTSLKWIFVG-GKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA-HNLSDAFGTK 68

>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 324

 Score = 44.5 bits (105), Expect = 3e-05
 Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 50  PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLE 101
              V I  GKGGVGKTT +A   L +AR G   + I  D    +L   L  E
Sbjct: 14  TTFVFIG-GKGGVGKTTISAATALWMARSGKKTLVISTDPA-HSLSDSLERE 63

>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A* Length = 349

 Score = 43.8 bits (103), Expect = 4e-05
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 45  LAGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLE 101
              +  + ++   GKGGVGKTT +A  G+ LA  G  VV +  D    +L  +   E
Sbjct: 21  EKKDGTKYIMFG-GKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPA-HSLRDIFEQE 75

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10 Length = 269

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 51/266 (19%), Positives = 100/266 (37%), Gaps = 52/266 (19%)

Query: 58  GKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLD---LLLGLENRVNYTVVEVL-- 112
           GKGG+GK+TTT N+   L  +G +++ +  D      D   LLLG       +V++ L  
Sbjct: 8   GKGGIGKSTTTQNLTSGLHAMGKTIMVVGCD---PKADSTRLLLG--GLAQKSVLDTLRE 62

Query: 113 -NGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEG----SP 167
              D  LD   +  + +    + C+     +  +G  G+ +   +  L+  Q G      
Sbjct: 63  EGEDVELDS--ILKEGYGG--IRCVESGGPEPGVGCAGRGIITSINMLE--QLGAYTDDL 116

Query: 168 DFILID------CPAGIDAGFITAITP--ANEAVLVTTPDITSLRDADRVTGLLECDGIR 219
           D++  D      C      GF   I    A E  +V + ++ +L  A+ +       GI+
Sbjct: 117 DYVFYDVLGDVVC-----GGFAMPIREGKAQEIYIVASGEMMALYAANNI-----SKGIQ 166

Query: 220 DIK---------MVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGY 270
                       ++ N  +      E  + +    + LG  L+  +P    V ++     
Sbjct: 167 KYAKSGGVRLGGIICNSRKVA---NEYEL-LDAFAKELGSQLIHFVPRSPMVTKAEINKQ 222

Query: 271 PLVLNKPPTLAGLAFEQAAWRLVEQD 296
            ++   P       + + A ++   +
Sbjct: 223 TVIEYDPTCEQAEEYRELARKVDANE 248

>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A Length = 289

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 60/305 (19%), Positives = 115/305 (37%), Gaps = 60/305 (19%)

Query: 58  GKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLD---LLLGLENRVNYTVVEVL-- 112
           GKGG+GK+TTT N+  +LA +G  V+ +  D      D   L+L   ++   T++E+   
Sbjct: 9   GKGGIGKSTTTQNLVAALAEMGKKVMIVGCD---PKADSTRLILH--SKAQNTIMEMAAE 63

Query: 113 ---NGDCRLDQALVRDKRWSNFELLCISKPRSKLP---LGFGGKALTWVVEALKSRQ--E 164
                D  L+  L          + C+    S  P   +G  G+ +   +  L+     E
Sbjct: 64  AGTVEDLELEDVLKAGYGG----VKCV---ESGGPEPGVGCAGRGVITAINFLEEEGAYE 116

Query: 165 GSPDFILID------CPAGIDAGFITAITP--ANEAVLVTTPDITSLRDADRVTGLLECD 216
              DF+  D      C      GF   I    A E  +V + ++ ++  A+ +       
Sbjct: 117 DDLDFVFYDVLGDVVC-----GGFAMPIRENKAQEIYIVCSGEMMAMYAANNI-----SK 166

Query: 217 GIRDIK---------MVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTN 267
           GI             ++ N   TD  + +++  ++ +   LG  ++  +P D+ V R+  
Sbjct: 167 GIVKYANSGSVRLGGLICNSRNTD--REDEL--IIALANKLGTQMIHFVPRDNVVQRAEI 222

Query: 268 RGYPLVLNKPPTLAGLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFSFF-GLGVLAVTVG 326
           R   ++   P       +   A ++V+   +   ++                G++ V   
Sbjct: 223 RRMTVIEYDPKAKQADEYRALARKVVDNKLL---VIPNPITMDELEELLMEFGIMEVEDE 279

Query: 327 LEVGS 331
             VG 
Sbjct: 280 SIVGK 284

>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A* Length = 354

 Score = 43.7 bits (103), Expect = 5e-05
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 45  LAGETPRVVVITSGKGGVGKTTTTA--NVGLSLARLGFSVVAIDADVGLRNLDLLLGLE 101
           +   T + + +  GKGGVGKTT++    + ++L++     + I  D    NL    G +
Sbjct: 13  ITSTTHKWIFVG-GKGGVGKTTSSCSIAIQMALSQPNKQFLLISTD-PAHNLSDAFGEK 69

>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii} Length = 348

 Score = 42.9 bits (101), Expect = 7e-05
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 4/59 (6%)

Query: 45  LAGETPRVVVITSGKGGVGKTTTTAN--VGLSLARLGFSVVAIDADVGLRNLDLLLGLE 101
           +  ++ + + +  GKGGVGKTTT+++  V L+LA+     + I  D    NL      +
Sbjct: 13  VQHDSLKWIFVG-GKGGVGKTTTSSSVAVQLALAQPNEQFLLISTD-PAHNLSDAFCQK 69

>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP} Length = 374

 Score = 40.7 bits (95), Expect = 4e-04
 Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 1/32 (3%)

Query: 51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSV 82
           ++    GK GV +T         LA  G  V
Sbjct: 3  LILTFL-GKSGVARTKIAIAAAKLLASQGKRV 33

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	340
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	100.0
1hyq_A	263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	100.0
1g3q_A	237	MIND ATPase, cell division inhibitor; alpha-beta-a	100.0
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	100.0
3end_A	307	Light-independent protochlorophyllide reductase ir	100.0
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	100.0
2afh_E	289	Nitrogenase iron protein 1; nitrogen fixation, iro	100.0
3fwy_A	314	Light-independent protochlorophyllide reductase I	100.0
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	100.0
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	100.0
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	100.0
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	100.0
3la6_A	286	Tyrosine-protein kinase WZC; P-loop protein, nucle	99.98
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	99.97
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	99.97
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	99.97
3pg5_A	361	Uncharacterized protein; structural genomics, PSI-	99.97
2xj4_A	286	MIPZ; replication, cell division, ATPase, WACA; 1.	99.97
3cwq_A	209	Para family chromosome partitioning protein; alpha	99.97
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	99.97
3ez2_A	398	Plasmid partition protein A; type IA, DNA binding,	99.96
3ez9_A	403	Para; DNA binding, winged-HTH, partition, biosynth	99.96
3fkq_A	373	NTRC-like two-domain protein; RER070207001320, str	99.93
2woj_A	354	ATPase GET3; tail-anchored, membrane protein, targ	99.88
3ug7_A	349	Arsenical pump-driving ATPase; tail-anchored, memb	99.87
3zq6_A	324	Putative arsenical pump-driving ATPase; tail-ancho	99.86
1byi_A	224	Dethiobiotin synthase; biotin synthesis, cyclo-lig	99.84
2woo_A	329	ATPase GET3; tail-anchored, membrane protein, targ	99.81
3iqw_A	334	Tail-anchored protein targeting factor GET3; ATPas	99.8
3io3_A	348	DEHA2D07832P; chaperone, membrane traffic, ATPase;	99.79
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	99.74
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	99.72
3igf_A	374	ALL4481 protein; two-domained protein consisting o	99.67
3of5_A	228	Dethiobiotin synthetase; structural genomics, cent	99.61
2xxa_A	433	Signal recognition particle protein; protein trans	99.6
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	99.54
3fgn_A	251	Dethiobiotin synthetase; biotin biosynthesis, BIOD	99.53
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	99.52
3qxc_A	242	Dethiobiotin synthetase; DTBS, structural genomics	99.48
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	99.46
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.45
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	99.42
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	99.42
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	99.37
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	99.32
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	99.24
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	99.21
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	99.16
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.08
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	98.91
2obn_A	349	Hypothetical protein; structural genomics, joint c	98.61
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	98.6
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.57
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.24
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.22
3pzx_A	557	Formate--tetrahydrofolate ligase; HET: TOE; 2.20A	98.09
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.95
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	97.7
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.69
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	97.6
2og2_A	359	Putative signal recognition particle receptor; nuc	97.56
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	97.43
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.4
1u94_A	356	RECA protein, recombinase A; homologous recombinat	97.38
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.22
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.2
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	97.18
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	97.17
1xp8_A	366	RECA protein, recombinase A; recombination, radior	97.16
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.13
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	97.13
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	96.85
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	96.85
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.79
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	96.79
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	96.75
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.74
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	96.72
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.72
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	96.7
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	96.69
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.68
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.61
2g0t_A	350	Conserved hypothetical protein; structural genomic	96.56
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.52
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	96.51
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	96.5
3io5_A	333	Recombination and repair protein; storage dimer, i	96.48
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	96.44
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	96.38
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	96.24
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	96.17
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	96.06
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.03
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	95.96
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	95.92
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	95.91
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	95.85
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	95.84
2z43_A	324	DNA repair and recombination protein RADA; archaea	95.83
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	95.79
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	95.75
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	95.74
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	95.74
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	95.71
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.71
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	95.69
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	95.65
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	95.64
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	95.63
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	95.6
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	95.5
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	95.45
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	95.41
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	95.4
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	95.4
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	95.38
1vco_A	550	CTP synthetase; tetramer, riken structural genomic	95.27
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	95.12
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	95.05
2hf9_A	226	Probable hydrogenase nickel incorporation protein	95.05
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	95.0
1s1m_A	545	CTP synthase; CTP synthetase, UTP:ammonia ligase (	94.95
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	94.93
2ged_A	193	SR-beta, signal recognition particle receptor beta	94.86
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	94.77
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	94.65
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	94.57
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	94.54
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	94.51
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	94.49
1nrj_B	218	SR-beta, signal recognition particle receptor beta	94.48
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	94.48
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	94.46
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	94.43
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	94.43
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	94.41
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	94.4
2r6a_A	454	DNAB helicase, replicative helicase; replication,	94.33
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	94.31
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	94.28
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	94.26
3bos_A	242	Putative DNA replication factor; P-loop containing	94.26
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	94.25
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	94.2
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	94.17
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	94.15
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	94.08
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	94.0
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	93.96
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	93.93
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	93.88
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	93.85
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	93.83
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	93.83
2c5m_A	294	CTP synthase; cytidine 5-prime triphosphate synthe	93.81
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	93.76
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	93.74
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	93.71
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	93.69
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	93.67
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	93.66
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	93.64
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	93.6
3do6_A	543	Formate--tetrahydrofolate ligase; TM1766, putative	93.52
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	93.5
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	93.47
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	93.44
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	93.41
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	93.38
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	93.38
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	93.36
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	93.31
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	93.3
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	93.22
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	93.17
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	93.16
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	93.15
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	93.14
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	93.06
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	93.03
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	93.02
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	93.01
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	92.99
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	92.95
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	92.92
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	92.74
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	92.72
2qgz_A	308	Helicase loader, putative primosome component; str	92.67
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	92.59
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	92.5
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	92.49
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	92.47
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	92.46
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	92.4
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	92.39
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	92.39
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	92.38
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	92.35
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	92.35
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	92.2
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	92.17
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	92.17
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	92.15
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	92.13
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	92.1
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	92.09
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	92.05
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	92.04
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	92.03
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	92.01
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	92.01
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	92.0
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	91.99
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	91.99
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	91.97
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	91.97
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	91.94
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	91.93
3nva_A	535	CTP synthase; rossman fold, nucleotide binding, LI	91.87
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	91.86
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	91.85
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	91.82
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	91.82
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	91.81
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	91.78
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	91.77
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	91.73
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	91.71
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	91.71
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	91.68
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	91.65
1via_A	175	Shikimate kinase; structural genomics, transferase	91.65
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	91.63
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	91.61
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	91.59
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	91.58
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	91.54
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	91.5
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	91.48
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	91.41
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	91.4
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	91.39
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	91.28
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	91.26
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	91.26
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	91.25
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	91.2
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	91.2
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	91.19
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	91.01
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	90.93
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	90.93
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	90.87
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	90.87
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	90.86
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	90.86
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	90.78
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	90.7
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	90.69
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	90.68
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	90.53
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	90.36
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	90.33
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	90.32
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	90.32
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	90.28
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	90.27
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	90.26
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	90.24
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	90.22
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	90.22
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	90.18
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	90.1
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	90.08
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	90.01
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	90.0
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	89.95
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	89.75
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	89.73
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	89.63
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	89.61
2vo1_A	295	CTP synthase 1; pyrimidine biosynthesis, glutamine	89.59
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	89.56
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	89.55
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	89.51
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	89.48
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	89.36
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	89.34
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	89.32
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	89.31
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	89.23
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	89.19
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	89.06
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	88.83
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	88.83
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	88.77
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	88.6
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	88.59
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	88.58
4a74_A	231	DNA repair and recombination protein RADA; hydrola	88.54
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	88.54
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	88.35
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	88.23
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	88.14
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	88.13
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	88.07
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	88.04
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	88.02
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	87.86
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	87.81
2vli_A	183	Antibiotic resistance protein; transferase, tunica	87.8
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	87.74
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	87.74
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	87.73
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	87.66
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	87.59
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	87.5
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	87.27
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	87.23
1jbw_A	428	Folylpolyglutamate synthase; FPGS folate AMPPCP te	87.21
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	87.19
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	87.09
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	87.07
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	87.07
2chg_A	226	Replication factor C small subunit; DNA-binding pr	87.05
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	87.05
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	87.02
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	86.85
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	86.81
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	86.79
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	86.67
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	86.66
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	86.66
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	86.66
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	86.59
1wb1_A	482	Translation elongation factor SELB; selenocysteine	86.59
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	86.58
1w4r_A	195	Thymidine kinase; type II, human, cytosolic, phosp	86.55
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	86.54
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	86.51
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	86.43
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	86.34
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	86.33
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	86.22
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	86.2
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	86.14
1w78_A	422	FOLC bifunctional protein; DHFS, dihydrofolate syn	86.01
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	86.01
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	86.0
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	85.82
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	85.65
3nrs_A	437	Dihydrofolate:folylpolyglutamate synthetase; struc	85.59
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	85.48
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	85.47
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	85.46
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	85.38
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	85.25
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	85.07
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	85.01
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	85.0
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	84.89
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	84.87
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	84.77
2eyu_A	261	Twitching motility protein PILT; pilus retraction	84.74
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	84.55
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	84.42
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	84.38
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	84.31
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	84.04
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	84.02
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	84.01
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	83.91
3llu_A	196	RAS-related GTP-binding protein C; structural geno	83.79
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	83.75
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	83.75
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	83.68
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	83.68
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	83.65
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	83.5
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	83.48
2fna_A	357	Conserved hypothetical protein; structural genomic	83.42
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	83.4
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	83.37
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	83.34
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	83.31
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	83.26
1o5z_A	442	Folylpolyglutamate synthase/dihydrofolate synthas;	83.17
2ewv_A	372	Twitching motility protein PILT; pilus retraction	83.12
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	83.11
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	83.06
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	83.04
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	82.97
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	82.88
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	82.74
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	82.69
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	82.63
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	82.41
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	82.39
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	82.33
2vos_A	487	Folylpolyglutamate synthase protein FOLC; ligase,	82.3
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	82.29
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	82.27
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	82.23
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	82.22
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	82.16
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	82.13
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	82.12
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	81.96
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	81.81
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	81.8
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	81.79
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	81.76
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	81.59
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	81.55
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	81.42
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	81.32
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	81.29
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	81.24
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	81.23
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	81.1
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	81.02
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	80.96
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	80.95
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	80.92
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	80.87
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	80.87
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	80.82
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	80.8
3bs4_A	260	Uncharacterized protein PH0321; structural genomic	80.77
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	80.69
4dqx_A	277	Probable oxidoreductase protein; structural genomi	80.64
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	80.58
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	80.5
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	80.31
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	80.29
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	80.27
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	80.26
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	80.19
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	80.17
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	80.16
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	80.15
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	80.13
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	80.12
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	80.11
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	80.1
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	80.07

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*

Probab=100.00  E-value=1.7e-37  Score=276.94  Aligned_cols=244  Identities=39%  Similarity=0.655  Sum_probs=211.4

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccccc
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRW  128 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  128 (340)
                      |+++|+|+|+|||+||||+|+|||..|+++|++|++||+|++.+++..++|.+.....++.+++.+...+.+.+.+....
T Consensus         1 M~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~~~~~lg~~~~~~~~l~~~l~~~~~~~~~~~~~~~~   80 (260)
T 3q9l_A            1 MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRT   80 (260)
T ss_dssp             -CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSSCCHHHHTTCGGGCCSCHHHHHTTSSCHHHHCEECSSS
T ss_pred             CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCCCCCChhHHhCCCCcccCCHHHHhcCCCChHHheeccCCC
Confidence            57999999999999999999999999999999999999999779999999998776789999999988888877776666


Q ss_pred             CceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHHHH
Q 047623          129 SNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADR  208 (340)
Q Consensus       129 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~  208 (340)
                      ++++++|++....  ........+..+++.+++.   .||+||||+||+.+.....++..||.+++|+.++..++..+.+
T Consensus        81 ~~l~~lp~~~~~~--~~~~~~~~~~~~l~~l~~~---~yD~viiD~p~~~~~~~~~~l~~ad~vi~v~~~~~~s~~~~~~  155 (260)
T 3q9l_A           81 ENLYILPASQTRD--KDALTREGVAKVLDDLKAM---DFEFIVCDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDR  155 (260)
T ss_dssp             TTEEEECCCSCCC--TTSSCHHHHHHHHHHHHHT---TCSEEEEECCSSSSHHHHHHHHTCSEEEEEECSSHHHHHHHHH
T ss_pred             CCEEEecCCCccc--hhhCCHHHHHHHHHHHhcc---CCCEEEEcCCCCCCHHHHHHHHhCCEEEEEecCChhHHHHHHH
Confidence            8999999877642  2335566677777777651   6999999999999998899999999999999999999999999


Q ss_pred             HHHHHHhcCC--------CceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCCCH
Q 047623          209 VTGLLECDGI--------RDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTL  280 (340)
Q Consensus       209 ~~~~l~~~~~--------~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~s~  280 (340)
                      +++.++..+.        ..+++|+|+++++..........+++.+.+|.++++.||+++.+.++...|+|+.. .|+++
T Consensus       156 ~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ip~~~~~~~a~~~g~~v~~-~~~s~  234 (260)
T 3q9l_A          156 ILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVLRASNQGEPVIL-DINAD  234 (260)
T ss_dssp             HHHHHTTSSHHHHTTCSCCEEEEEEEEECHHHHHTTSSCCHHHHHHHHCSEEEEEEECCHHHHHHHHHTCCGGG-CTTCH
T ss_pred             HHHHHHHhccccccccCCcceEEEEecCCccccccccccCHHHHHHHhCCceEEecCCChhHHHHHHcCCCeEE-CCCCH
Confidence            9999986542        47899999998764333344456788899999999999999999999999999999 99999


Q ss_pred             HHHHHHHHHHHHHhcccc
Q 047623          281 AGLAFEQAAWRLVEQDSM  298 (340)
Q Consensus       281 ~~~~~~~la~~i~~~~~~  298 (340)
                      ++++|.+|+++|+++...
T Consensus       235 ~~~~~~~la~~l~~~~~~  252 (260)
T 3q9l_A          235 AGKAYADTVERLLGEERP  252 (260)
T ss_dssp             HHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHHHhcCCCc
Confidence            999999999999998643

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10

Probab=100.00  E-value=1.3e-37  Score=278.49  Aligned_cols=258  Identities=33%  Similarity=0.485  Sum_probs=197.1

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccccc
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRW  128 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  128 (340)
                      |+++|+|+|+|||+||||+|+|||..|+++|++|++||+|++.++++.+|+.+... .++.+++.+...+++.+....  
T Consensus         1 M~~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~l~~~~~~-~~l~~~l~~~~~~~~~i~~~~--   77 (263)
T 1hyq_A            1 MVRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLP-VTLQNVLAGEARIDEAIYVGP--   77 (263)
T ss_dssp             -CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSSSSHHHHTTCCCCC-CCHHHHHTTSSCGGGGCEECG--
T ss_pred             CCeEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCCCCCcchhcCCCCCC-CCHHHHHcCCCcHHHhheeCC--
Confidence            57999999999999999999999999999999999999999779999999987652 688899988777777665543  


Q ss_pred             CceeEeecCCCCCCCCCCcc-hhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHHH
Q 047623          129 SNFELLCISKPRSKLPLGFG-GKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDAD  207 (340)
Q Consensus       129 ~~l~~l~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~  207 (340)
                      ++++++|+......  .... ...+..+++.+.+    +||+||||+||+.......++..+|.+++|+.++..++..+.
T Consensus        78 ~~l~~lp~~~~~~~--~~~~~~~~l~~~l~~l~~----~yD~viiD~~~~~~~~~~~~~~~ad~vi~v~~~~~~~~~~~~  151 (263)
T 1hyq_A           78 GGVKVVPAGVSLEG--LRKANPEKLEDVLTQIME----STDILLLDAPAGLERSAVIAIAAAQELLLVVNPEISSITDGL  151 (263)
T ss_dssp             GGCEEEECCSCHHH--HHHHCHHHHHHHHHHHHH----TCSEEEEECCSSSSHHHHHHHHHSSEEEEEECSSHHHHHHHH
T ss_pred             CCeEEEcCCCCcCh--hhccChHHHHHHHHHHHh----hCCEEEEeCCCCCChHHHHHHHHCCEEEEEeCCChhHHHHHH
Confidence            78999984432110  0111 3455566666665    799999999999998888899999999999999999999999


Q ss_pred             HHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCCCHHHHHHHH
Q 047623          208 RVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQ  287 (340)
Q Consensus       208 ~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~s~~~~~~~~  287 (340)
                      ++++.++..+...+++|+|++++....    ....++.+.++.++++.||+++.+.++...|+|+.++.|+++++++|.+
T Consensus       152 ~~~~~l~~~~~~~~~vv~N~~~~~~~~----~~~~~~~~~~~~~~~~~Ip~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~  227 (263)
T 1hyq_A          152 KTKIVAERLGTKVLGVVVNRITTLGIE----MAKNEIEAILEAKVIGLIPEDPEVRRAAAYGKPVVLRSPNSPAARAIVE  227 (263)
T ss_dssp             HHHHHHHHHTCEEEEEEEEEECTTTHH----HHHHHHHHHTTSCEEEEEECCHHHHHHHHHTSCHHHHCTTSHHHHHHHH
T ss_pred             HHHHHHHhcCCCeeEEEEccCCccccc----chHHHHHHHhCCCeEEECCCCHHHHHHHHcCCceEEcCCCCHHHHHHHH
Confidence            999999887788899999999876421    3466788889999999999999999999999999999999999999999


Q ss_pred             HHHHHHhccccchhhhccCccccchhhhhccc
Q 047623          288 AAWRLVEQDSMKAVMVEEEPKRRGFFSFFGLG  319 (340)
Q Consensus       288 la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (340)
                      |+++|.++.....+......++++||++++++
T Consensus       228 la~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~  259 (263)
T 1hyq_A          228 LANYIAGGAKKKVPAEVKEKKKEGALAKMLRI  259 (263)
T ss_dssp             HHHHHC--------------------------
T ss_pred             HHHHHHhhcccCCCccCcchhhHHHHHHHHHH
Confidence            99999887321111111225777888888764

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*

Probab=100.00  E-value=7.9e-36  Score=262.59  Aligned_cols=235  Identities=33%  Similarity=0.506  Sum_probs=198.4

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccccc
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRW  128 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  128 (340)
                      |+++|+|+|+|||+||||+|+|||..|+++|++|++||+|++.++++.+|+.+... .++.+++.+...+++.+.+.. .
T Consensus         1 M~~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~-~~l~~~l~~~~~~~~~i~~~~-~   78 (237)
T 1g3q_A            1 MGRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPD-VTLHDVLAGEANVEDAIYMTQ-F   78 (237)
T ss_dssp             CCEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTSCCHHHHTTCCCCS-SCHHHHHTTSSCGGGGCEECS-S
T ss_pred             CceEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCCCCChhHhcCCCCCC-CCHHHHhcCCCCHHHHhhcCC-C
Confidence            57999999999999999999999999999999999999999889999999987652 688899888777766655433 4


Q ss_pred             CceeEeecCCCCCCCCCCcc-hhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHHH
Q 047623          129 SNFELLCISKPRSKLPLGFG-GKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDAD  207 (340)
Q Consensus       129 ~~l~~l~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~  207 (340)
                      ++++++|+......  .... ...+..+++.+++    +||+||||+||+.......++..+|.+++|+.++..++..+.
T Consensus        79 ~~l~~lp~~~~~~~--~~~~~~~~l~~~l~~l~~----~yD~viiD~~~~~~~~~~~~~~~ad~vi~v~~~~~~~~~~~~  152 (237)
T 1g3q_A           79 DNVYVLPGAVDWEH--VLKADPRKLPEVIKSLKD----KFDFILIDCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTM  152 (237)
T ss_dssp             TTEEEECCCCSHHH--HHHCCGGGHHHHHHTTGG----GCSEEEEECCSSSSHHHHHHHTTCSEEEEEECSCHHHHHHHH
T ss_pred             CCEEEEeCCCccch--hhhcCHHHHHHHHHHHHh----cCCEEEEECCCCcCHHHHHHHHHCCeEEEEecCCcccHHHHH
Confidence            78999984322110  0111 3455555555544    799999999999998888999999999999999999999999


Q ss_pred             HHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCCCHHHHHHHH
Q 047623          208 RVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQ  287 (340)
Q Consensus       208 ~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~s~~~~~~~~  287 (340)
                      ++++.++..+....++|+|++++....    ...+++.+.++.++++.||+++.+.++...|+|+.++.|+++++++|.+
T Consensus       153 ~~~~~l~~~~~~~~~vv~N~~~~~~~~----~~~~~~~~~~~~~~~~~Ip~~~~~~~a~~~g~~v~~~~~~~~~~~~~~~  228 (237)
T 1g3q_A          153 KVGIVLKKAGLAILGFVLNRYGRSDRD----IPPEAAEDVMEVPLLAVIPEDPAIREGTLEGIPAVKYKPESKGAKAFVK  228 (237)
T ss_dssp             HHHHHHHHTTCEEEEEEEEEETSCTTC----CCHHHHHHHHCSCEEEEEECCHHHHHHHHHTSCHHHHSTTSHHHHHHHH
T ss_pred             HHHHHHHhCCCceEEEEEecCCcccch----hHHHHHHHHhCccceeeCCCChHHHHHHHcCCCeEEeCCCCHHHHHHHH
Confidence            999999988888899999999876422    3467788889999999999999999999999999999999999999999


Q ss_pred             HHHHHHhc
Q 047623          288 AAWRLVEQ  295 (340)
Q Consensus       288 la~~i~~~  295 (340)
                      |+++|.++
T Consensus       229 la~~l~~~  236 (237)
T 1g3q_A          229 LAEEIEKL  236 (237)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhc
Confidence            99999865

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=100.00  E-value=4.3e-36  Score=265.48  Aligned_cols=236  Identities=23%  Similarity=0.320  Sum_probs=196.2

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceec--
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARL-GFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVR--  124 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~-g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~--  124 (340)
                      +++++|+|+|+|||+||||+|+|||..|+++ |++|++||+|++.++++.+|+... +..++.+++.+....++.+..  
T Consensus         2 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~~~~l~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~   80 (245)
T 3ea0_A            2 NAKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLPFGDLDMYLSGNT-HSQDLADISNASDRLDKSLLDTM   80 (245)
T ss_dssp             -CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTTTCCGGGGTCSSC-CSCCHHHHHHTGGGCCHHHHHHH
T ss_pred             CCCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCCCCCHHHHhCCCC-CCCCHHHHHhhHhhhhHHHHHHH
Confidence            5689999999999999999999999999998 999999999999999999985332 347888998876655432211  


Q ss_pred             -ccccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhH
Q 047623          125 -DKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSL  203 (340)
Q Consensus       125 -~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~  203 (340)
                       ....++++++|++........ +..+.+..+++.+++    +||+||||+||+.+.....++..||.+++|+.++..++
T Consensus        81 ~~~~~~~l~~l~~~~~~~~~~~-~~~~~l~~~l~~l~~----~yD~viiD~p~~~~~~~~~~l~~ad~viiv~~~~~~~~  155 (245)
T 3ea0_A           81 VQHISPSLDLIPSPATFEKIVN-IEPERVSDLIHIAAS----FYDYIIVDFGASIDHVGVWVLEHLDELCIVTTPSLQSL  155 (245)
T ss_dssp             SEEEETTEEEECCCSSHHHHHH-CCHHHHHHHHHHHHH----HCSEEEEEEESSCCTTHHHHGGGCSEEEEEECSSHHHH
T ss_pred             hEecCCCeEEEcCCCChHhhhc-CCHHHHHHHHHHHHh----hCCEEEEeCCCCCchHHHHHHHHCCEEEEEecCcHHHH
Confidence             123489999998765433221 445667777877776    69999999999998888899999999999999999999


Q ss_pred             HHHHHHHHHHHhcC--CCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCCh-HHHHHHhcCCceEeeCCCCH
Q 047623          204 RDADRVTGLLECDG--IRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDS-EVIRSTNRGYPLVLNKPPTL  280 (340)
Q Consensus       204 ~~~~~~~~~l~~~~--~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~-~~~~a~~~g~~v~~~~~~s~  280 (340)
                      ..+.++++.++..+  ...+++|+|+++++..     ...+++++.+|.++++.||+++ .+.++...|+|+.++.|+++
T Consensus       156 ~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~~-----~~~~~~~~~~~~~v~~~ip~~~~~~~~a~~~g~~v~~~~~~s~  230 (245)
T 3ea0_A          156 RRAGQLLKLCKEFEKPISRIEIILNRADTNSR-----ITSDEIEKVIGRPISKRIPQDEDAMQESLLSGQSVLKVAPKSQ  230 (245)
T ss_dssp             HHHHHHHHHHHTCSSCCSCEEEEEESTTSCTT-----SCHHHHHHHHTSCEEEEECCCHHHHHHHHHHTSCHHHHCTTSH
T ss_pred             HHHHHHHHHHHHhCCCccceEEEEecCCCCCC-----CCHHHHHHHhCCCeEEECCCChHHHHHHHHcCCCccccCCCCH
Confidence            99999999998776  5679999999987642     2346888899999999999997 68999999999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 047623          281 AGLAFEQAAWRLVE  294 (340)
Q Consensus       281 ~~~~~~~la~~i~~  294 (340)
                      ++++|.+|+++|++
T Consensus       231 ~~~~~~~la~~l~g  244 (245)
T 3ea0_A          231 LSKTIVDWALHLNG  244 (245)
T ss_dssp             HHHHHHHHHHCC--
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999998875

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*

Probab=100.00  E-value=4.3e-35  Score=261.39  Aligned_cols=238  Identities=22%  Similarity=0.316  Sum_probs=187.1

Q ss_pred             CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccc
Q 047623           47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDK  126 (340)
Q Consensus        47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  126 (340)
                      ++++++|+|+|+|||+||||+|+|||..|+++|+||++||+|++ +++..+|+.++  ..++.+++.+. .+++.+.+  
T Consensus         3 ~~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~-~~~~~~l~~~~--~~~l~~~l~~~-~~~~~i~~--   76 (257)
T 1wcv_1            3 RAKVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQ-GNATSGLGVRA--ERGVYHLLQGE-PLEGLVHP--   76 (257)
T ss_dssp             --CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTT-CHHHHHTTCCC--SCCHHHHHTTC-CGGGTCEE--
T ss_pred             CCCCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCC-cCHHHHhCCCC--CCCHHHHHcCC-CHHHHccc--
Confidence            46779999999999999999999999999999999999999998 78888898876  36888988876 66665554  


Q ss_pred             ccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhcc-CCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHH
Q 047623          127 RWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQE-GSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRD  205 (340)
Q Consensus       127 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~  205 (340)
                       .++++++|++.........+....     +.+.+.+. .+||||||||||+.+.....++..||.+++|+.++..++..
T Consensus        77 -~~~l~vlp~~~~~~~~~~~l~~~~-----~~l~~~l~~~~yD~iiiD~pp~~~~~~~~~l~~aD~viiv~~~~~~s~~~  150 (257)
T 1wcv_1           77 -VDGFHLLPATPDLVGATVELAGAP-----TALREALRDEGYDLVLLDAPPSLSPLTLNALAAAEGVVVPVQAEYYALEG  150 (257)
T ss_dssp             -ETTEEEECCCTTHHHHHHHHTTCT-----THHHHHCCCTTCSEEEEECCSSCCHHHHHHHHHCSEEEEEEESSTHHHHH
T ss_pred             -cCCEEEEeCChhHHHHHHHHhhHH-----HHHHHHhcccCCCEEEEeCCCCCCHHHHHHHHHCCeEEEEecCchHHHHH
Confidence             489999988755321100000000     12222221 47999999999999988888899999999999999999999


Q ss_pred             HHHHHHHHHhc------CCCceEEEEecccCCcccccccccHHHHHHHhCCcee-EEecCChHHHHHHhcCCceEeeCCC
Q 047623          206 ADRVTGLLECD------GIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL-GVIPEDSEVIRSTNRGYPLVLNKPP  278 (340)
Q Consensus       206 ~~~~~~~l~~~------~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~-~~Ip~d~~~~~a~~~g~~v~~~~~~  278 (340)
                      +.++++.++..      +.+..++|+|+++.+.....  ...+.+++.++.+++ +.||++..+.++...|+|+.++.|+
T Consensus       151 ~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~~~~~~--~~~~~l~~~~~~~~~~~~Ip~~~~~~~a~~~g~~v~~~~~~  228 (257)
T 1wcv_1          151 VAGLLATLEEVRAGLNPRLRLLGILVTMYDGRTLLAQ--QVEAQLRAHFGEKVFWTVIPRNVRLAEAPSFGKTIAQHAPT  228 (257)
T ss_dssp             HHHHHHHHHHHHHHTCTTCEEEEEEEESBCTTCSHHH--HHHHHHHHHHGGGBCSCCCBCCHHHHHHHHHTCCHHHHCTT
T ss_pred             HHHHHHHHHHHHHHhCCCceEEEEEEEeECCCcHHHH--HHHHHHHHHccccccCccCCCcHHHHHHHHcCCCHHHhCCC
Confidence            98888887642      34456899999987542211  224567777888876 7899999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHhcccc
Q 047623          279 TLAGLAFEQAAWRLVEQDSM  298 (340)
Q Consensus       279 s~~~~~~~~la~~i~~~~~~  298 (340)
                      ++++++|.+|+++|+++.+.
T Consensus       229 ~~~~~~~~~la~~l~~~~~~  248 (257)
T 1wcv_1          229 SPGAHAYRRLAEEVMARVQE  248 (257)
T ss_dssp             SHHHHHHHHHHHHHHHHHC-
T ss_pred             ChHHHHHHHHHHHHHHhhcc
Confidence            99999999999999987643

>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A

Probab=100.00  E-value=1.1e-33  Score=256.48  Aligned_cols=257  Identities=19%  Similarity=0.269  Sum_probs=194.9

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCC-----ccccceec
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDC-----RLDQALVR  124 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~-----~~~~~~~~  124 (340)
                      |++|+| ++|||+||||+|+|||..|+++|++|++||+|+|.+....+++...  ..++.+++.+..     .+++.+..
T Consensus         2 MkvIav-s~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q~~~~~~~~~~~~--~~~l~~~l~~~~~~~~~~~~~~i~~   78 (289)
T 2afh_E            2 MRQCAI-YGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTRLILHSKA--QNTIMEMAAEAGTVEDLELEDVLKA   78 (289)
T ss_dssp             CEEEEE-EECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSSCSSHHHHCCSS--CCBHHHHHHTTSSGGGCCHHHHCEE
T ss_pred             ceEEEE-eCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCHHHHhcCCCC--CCcHHHHHhcccccccCCHHHhhcc
Confidence            689999 5799999999999999999999999999999999777777776544  367888887642     33444332


Q ss_pred             ccccCceeEeecCCCCCCCCCCcchhhHH---HHHHHHHHhccCCCCEEEEcCCCCCCH--HH-HHHHhcCCeEEEEeCC
Q 047623          125 DKRWSNFELLCISKPRSKLPLGFGGKALT---WVVEALKSRQEGSPDFILIDCPAGIDA--GF-ITAITPANEAVLVTTP  198 (340)
Q Consensus       125 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~---~l~~~l~~~~~~~~D~VIiD~~~~~~~--~~-~~~l~~ad~viiv~~~  198 (340)
                        ..++++++|++.......  .......   .+++.+.. +.++|||||||||+....  .. ......||.+++|+.+
T Consensus        79 --~~~~l~~l~~~~~~~~~~--~~~~~~~~~~~l~~~l~~-l~~~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~  153 (289)
T 2afh_E           79 --GYGGVKCVESGGPEPGVG--CAGRGVITAINFLEEEGA-YEDDLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSG  153 (289)
T ss_dssp             --CGGGCEEEECCCCCTTTC--CHHHHHHHHHHHHHHTTC-SSTTCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECS
T ss_pred             --CCCCeEEEeCCCcccccc--ccchhhhHHHHHHHHHHh-hccCCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecC
Confidence              348899999876543221  1111111   23333321 355799999999986532  11 1223579999999999


Q ss_pred             ChhhHHHHHHHHHHHHhc----CCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEe
Q 047623          199 DITSLRDADRVTGLLECD----GIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVL  274 (340)
Q Consensus       199 ~~~s~~~~~~~~~~l~~~----~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~  274 (340)
                      +..++..+.++++.++..    +.+..++|+|+++...    .....+++.+.+|.++++.||++..+.++...|+|+.+
T Consensus       154 ~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~----~~~~~~~l~~~~g~~~l~~Ip~~~~~~~a~~~g~~v~~  229 (289)
T 2afh_E          154 EMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDR----EDELIIALANKLGTQMIHFVPRDNVVQRAEIRRMTVIE  229 (289)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTT----HHHHHHHHHHHHTSCEEEEECCCHHHHHHHHTTSCHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCchh----HHHHHHHHHHHcCccccccCCCchhHHHHHHcCCCcee
Confidence            999999999888888652    4556899999986532    22335677788999999999999999999999999999


Q ss_pred             eCCCCHHHHHHHHHHHHHHhccccchhhhccCccccchhhhhcc
Q 047623          275 NKPPTLAGLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFSFFGL  318 (340)
Q Consensus       275 ~~~~s~~~~~~~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (340)
                      +.|+++++++|.+|+++|+++.....+.+.+...+++|+.+|+.
T Consensus       230 ~~~~s~~~~~~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (289)
T 2afh_E          230 YDPKAKQADEYRALARKVVDNKLLVIPNPITMDELEELLMEFGI  273 (289)
T ss_dssp             HCTTSHHHHHHHHHHHHHHHCCCCBCCCCCCHHHHHHHHHHTTS
T ss_pred             eCCCCHHHHHHHHHHHHHHhccccCCCCCCCHHHHHHHHHHhCc
Confidence            99999999999999999999877654555566778888888876

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=100.00  E-value=3.6e-33  Score=254.86  Aligned_cols=268  Identities=21%  Similarity=0.239  Sum_probs=183.5

Q ss_pred             hHHHHHhhCCCCCCCCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHh
Q 047623           32 SIQSVLQWNRKPELAGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEV  111 (340)
Q Consensus        32 ~~~~~l~~~~~~~~~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~  111 (340)
                      .-+-+++.+..+...-...|+|+|+ +||||||||+|+|||.+||+.|+||++||+|++.++...+++....   ...+.
T Consensus        30 ~~~~~~~~~~~~~~~i~~aKVIAIa-GKGGVGKTTtavNLA~aLA~~GkkVllID~Dpq~~s~~~l~~~~~~---~~~~~  105 (314)
T 3fwy_A           30 DGEGSVQVHLDEADKITGAKVFAVY-GKGGIGKSTTSSNLSAAFSILGKRVLQIGCDPKHDSTFTLTGSLVP---TVIDV  105 (314)
T ss_dssp             -----------------CCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEESSSCCTTHHHHTSCCC---CHHHH
T ss_pred             CCCcccccccCcccCCCCceEEEEE-CCCccCHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccCCCCC---cchhh
Confidence            3344555556666677888999998 6999999999999999999999999999999995555444433322   22222


Q ss_pred             hc------CCCccccceecccccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHH-hccCCCCEEEEcCCCCCCHHHH-
Q 047623          112 LN------GDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKS-RQEGSPDFILIDCPAGIDAGFI-  183 (340)
Q Consensus       112 l~------~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~D~VIiD~~~~~~~~~~-  183 (340)
                      ..      .....++.+..  ...++.+++++.......  +........+..+.+ .+.+.||+|++|++++...... 
T Consensus       106 ~~~~~~~~~~~~~~d~i~~--~~~~i~~v~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~d~~D~v~iD~~~~~~~~~~~  181 (314)
T 3fwy_A          106 LKDVDFHPEELRPEDFVFE--GFNGVMCVEAGGPPAGTG--CGGYVVGQTVKLLKQHHLLDDTDVVIFDVLGDVVCGGFA  181 (314)
T ss_dssp             HHHTTSCGGGCCHHHHCEE--CGGGCEEEECCCCCTTCS--CTTHHHHHHHHHHHHTTTTSSCSEEEEEECCSSCCGGGG
T ss_pred             HhhhccccccccHhHheee--cCCCeEEEeCCCCcccch--hhhccHHHHHHHHHhcchhhcCceEeeccCCcchhhhhH
Confidence            21      11222233322  336788888776543322  222333333444433 2456799999999998755443 


Q ss_pred             HHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhc----CCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCC
Q 047623          184 TAITPANEAVLVTTPDITSLRDADRVTGLLECD----GIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPED  259 (340)
Q Consensus       184 ~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~----~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d  259 (340)
                      +++..||.+|||++++..++.++.++++.++..    +.+..++|+|+.....       ..+++.+.++.++++.||.+
T Consensus       182 ~al~aAd~viIvt~~e~~Al~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~~~-------~v~~~a~~~~~~~lg~IP~d  254 (314)
T 3fwy_A          182 APLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRATD-------EVDRFCKETNFRRLAHMPDL  254 (314)
T ss_dssp             GGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCCH-------HHHHHHHHHTCCEEEEECCC
T ss_pred             hHHhhCCeEEEEeCCcHHHHHHHHHHHHHHHHHhccCCCceEEEEEcCCCchh-------HHHHHHHHhCCeEEEEecCc
Confidence            678899999999999999999999999888753    2345678999865542       25678889999999999999


Q ss_pred             hHHHHHHhcCCceEeeCCCCHHHHH---HHHHHHHHHhccccchhhhccCccccchhhhhc
Q 047623          260 SEVIRSTNRGYPLVLNKPPTLAGLA---FEQAAWRLVEQDSMKAVMVEEEPKRRGFFSFFG  317 (340)
Q Consensus       260 ~~~~~a~~~g~~v~~~~~~s~~~~~---~~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~  317 (340)
                      ..+.++...|+|+++++|+|+.+++   |++||++|+++....   .+...+.+.+|+.|+
T Consensus       255 ~~Vr~a~~~G~pvv~~~P~S~~a~aa~~Y~~LA~eil~~~~~~---~p~pl~d~el~~l~g  312 (314)
T 3fwy_A          255 DAIRRSRLKKKTLFEMDEDQDVLAARAEYIRLAESLWRGLDPI---DPHSLPDRDIFELLG  312 (314)
T ss_dssp             HHHHHHHHTTCCTTTSCCCHHHHHHHHHHHHHHHHHHHCCCCC---CCCCCCHHHHHHHTT
T ss_pred             hHHHHHHHcCCceEEECCCChhhHHHHHHHHHHHHHHhCCCCC---CCCCCCHHHHHHhhC
Confidence            9999999999999999999976555   999999999987543   224455677777665

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10

Probab=100.00  E-value=1.6e-33  Score=252.62  Aligned_cols=255  Identities=18%  Similarity=0.266  Sum_probs=192.2

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCC---Cccccceeccc
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGD---CRLDQALVRDK  126 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~  126 (340)
                      |++|+| ++|||+||||+|+|||..|+++|++|++||+|++.+....+++...  ..++.+++.+.   ..+++.+.  .
T Consensus         1 M~vI~v-s~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~q~~~~~~~~~~~~--~~~l~~~l~~~~~~~~~~~~i~--~   75 (269)
T 1cp2_A            1 MRQVAI-YGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADSTRLLLGGLA--QKSVLDTLREEGEDVELDSILK--E   75 (269)
T ss_dssp             CEEEEE-EECTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSCSSHHHHTSCC--CCCHHHHHHHHGGGCCHHHHCE--E
T ss_pred             CcEEEE-ecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCCCCCHHHHhcCCCC--cccHHHHHhccCcCCCHHHhhc--c
Confidence            589999 5899999999999999999999999999999999777777776654  36788887653   34444443  2


Q ss_pred             ccCceeEeecCCCCCCCCCCcchhhH---HHHHHHHHHhccCCCCEEEEcCCCCCCH--HHHH-HHhcCCeEEEEeCCCh
Q 047623          127 RWSNFELLCISKPRSKLPLGFGGKAL---TWVVEALKSRQEGSPDFILIDCPAGIDA--GFIT-AITPANEAVLVTTPDI  200 (340)
Q Consensus       127 ~~~~l~~l~~~~~~~~~~~~~~~~~~---~~l~~~l~~~~~~~~D~VIiD~~~~~~~--~~~~-~l~~ad~viiv~~~~~  200 (340)
                      ..++++++|++.......  ......   ..+++.+.. +.++|||||||||+....  .... ....||.+++|+.++.
T Consensus        76 ~~~~l~vl~~~~~~~~~~--~~~~~~~~~~~~~~~l~~-l~~~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~  152 (269)
T 1cp2_A           76 GYGGIRCVESGGPEPGVG--CAGRGIITSINMLEQLGA-YTDDLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEM  152 (269)
T ss_dssp             CGGGCEEEECCCCCTTSS--CHHHHHHHHHHHHHHTTC-CCTTCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSH
T ss_pred             CCCCeeEEeCCCchhhcc--ccCcchhhHHHHHHHHHh-hccCCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCch
Confidence            348999999876543321  111111   123333322 356799999999986532  1111 2247999999999999


Q ss_pred             hhHHHHHHHHHHHHhc----CCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeC
Q 047623          201 TSLRDADRVTGLLECD----GIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNK  276 (340)
Q Consensus       201 ~s~~~~~~~~~~l~~~----~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~  276 (340)
                      .++..+.++++.++..    +.+.+++|+|+++...    .....+++.+.+|.++++.||++..+.++...|+|+.++.
T Consensus       153 ~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~~----~~~~~~~l~~~~~~~v~~~Ip~~~~~~~a~~~g~~v~~~~  228 (269)
T 1cp2_A          153 MALYAANNISKGIQKYAKSGGVRLGGIICNSRKVAN----EYELLDAFAKELGSQLIHFVPRSPMVTKAEINKQTVIEYD  228 (269)
T ss_dssp             HHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSC----CHHHHHHHHHHHTCCEEEEECCCHHHHHHHHTTSCHHHHC
T ss_pred             hhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcch----hHHHHHHHHHHcCCcccccCCCCcHHHHHHHcCCceEEEC
Confidence            9999999988888753    3456799999997542    2234667788899999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHhccccchhhhccCccccchhhhhccc
Q 047623          277 PPTLAGLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFSFFGLG  319 (340)
Q Consensus       277 ~~s~~~~~~~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (340)
                      |+++++++|.+++++|.++....   .+.+.+.+.++.||+++
T Consensus       229 ~~s~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~~~~~~~  268 (269)
T 1cp2_A          229 PTCEQAEEYRELARKVDANELFV---IPKPMTQERLEEILMQY  268 (269)
T ss_dssp             TTSHHHHHHHHHHHHHHHCCCCB---CCCCCCHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHhccccC---CCCCCCHHHHHHHHHhc
Confidence            99999999999999999987643   24566667777777653

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=100.00  E-value=7.9e-33  Score=248.00  Aligned_cols=234  Identities=17%  Similarity=0.219  Sum_probs=168.4

Q ss_pred             CCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCc------CCCcccHHHhhcCCCccc
Q 047623           46 AGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLE------NRVNYTVVEVLNGDCRLD  119 (340)
Q Consensus        46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~------~~~~~~l~~~l~~~~~~~  119 (340)
                      ..+++++|+|+|+|||+||||+|+|||..|+ +|++|++||+|++ +++..+++..      .....++.+++.+...++
T Consensus        23 ~~~~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  100 (267)
T 3k9g_A           23 DNKKPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQ-ASITSYFYEKIEKLGINFTKFNIYEILKENVDID  100 (267)
T ss_dssp             ---CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTT-CHHHHHTHHHHHHTTCCTTTSSHHHHHTTSSCGG
T ss_pred             CCCCCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCC-CCHHHHhhccccccccCcccccHHHHhcCCCCHH
Confidence            4577899999999999999999999999999 9999999999999 4554444221      123578999999888888


Q ss_pred             cceecccccCceeEeecCCCCCCCCCCc---chhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEe
Q 047623          120 QALVRDKRWSNFELLCISKPRSKLPLGF---GGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVT  196 (340)
Q Consensus       120 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~---~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~  196 (340)
                      +.+.+..  ++++++|++..........   ....+..+++.+    ++.||+||||+||+.+.....++..||.+++|+
T Consensus       101 ~~i~~~~--~~l~~lp~~~~~~~~~~~~~~~~~~~l~~~l~~l----~~~yD~viiD~pp~~~~~~~~~l~~aD~vivv~  174 (267)
T 3k9g_A          101 STIINVD--NNLDLIPSYLTLHNFSEDKIEHKDFLLKTSLGTL----YYKYDYIVIDTNPSLDVTLKNALLCSDYVIIPM  174 (267)
T ss_dssp             GGCEEEE--TTEEEECCCGGGGGTTTCCCTTGGGHHHHHHHTT----CTTCSEEEEEECSSCSHHHHHHHTTCSEEEEEE
T ss_pred             HhhccCC--CCEEEEeCChHHHHHHHhhhhhHHHHHHHHHHHh----hcCCCEEEEECcCCccHHHHHHHHHCCeEEEEe
Confidence            8777654  8999999887654433222   233344444433    458999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhcCCC-ceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEee
Q 047623          197 TPDITSLRDADRVTGLLECDGIR-DIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLN  275 (340)
Q Consensus       197 ~~~~~s~~~~~~~~~~l~~~~~~-~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~  275 (340)
                      .++..++..+.++++.++..+.+ .+++|+|++.+.. ....  ..+.+.+  +.++++.||+++.+.++...|.++.. 
T Consensus       175 ~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~~~-~~~~--~~~~l~~--~~~~~~~Ip~~~~~~~a~~~g~~~~~-  248 (267)
T 3k9g_A          175 TAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKKNR-THKT--LFEILKT--KDRFLGTISEREDLNRRIAENNNFDL-  248 (267)
T ss_dssp             ESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECTTC-SCCH--HHHHHTT--STTEEEEEEC-----------------
T ss_pred             CCChHHHHHHHHHHHHHHHHhccCCEEEEEecccCcc-hHHH--HHHHHhc--CcccceecCcHHHHHHHHHhcCCcch-
Confidence            99999999999999999887543 5789999995432 1111  1222222  78899999999999999999998765 


Q ss_pred             CCCCHHHHHHHHHHHHHHhc
Q 047623          276 KPPTLAGLAFEQAAWRLVEQ  295 (340)
Q Consensus       276 ~~~s~~~~~~~~la~~i~~~  295 (340)
                        .+++.++|.+++++|+++
T Consensus       249 --~~~~~~~~~~i~~~l~~~  266 (267)
T 3k9g_A          249 --NKDYIKEYENILEIFLKK  266 (267)
T ss_dssp             --CCHHHHHHHHHHHHHHHH
T ss_pred             --hHHHHHHHHHHHHHHHhh
Confidence              478999999999999875

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=100.00  E-value=5.8e-32  Score=232.62  Aligned_cols=200  Identities=16%  Similarity=0.169  Sum_probs=165.3

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWS  129 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  129 (340)
                      |++|+|+|+|||+||||+|+|||..|+++|++|++||+|++ +++..+++...                          .
T Consensus         1 M~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~-~~~~~~~~~~~--------------------------~   53 (206)
T 4dzz_A            1 MKVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQ-MSLTNWSKAGK--------------------------A   53 (206)
T ss_dssp             CEEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT-CHHHHHHTTSC--------------------------C
T ss_pred             CeEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCC-CCHHHHHhcCC--------------------------C
Confidence            68999999999999999999999999999999999999998 66666554321                          2


Q ss_pred             ceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHHHHH
Q 047623          130 NFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRV  209 (340)
Q Consensus       130 ~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~  209 (340)
                      ++++++.+.           ..+..+++.+.+    +||+||||+||+.+.....++..||.+++|+.++..+ ..+.++
T Consensus        54 ~~~~~~~~~-----------~~l~~~l~~l~~----~yD~viiD~~~~~~~~~~~~l~~ad~viiv~~~~~~~-~~~~~~  117 (206)
T 4dzz_A           54 AFDVFTAAS-----------EKDVYGIRKDLA----DYDFAIVDGAGSLSVITSAAVMVSDLVIIPVTPSPLD-FSAAGS  117 (206)
T ss_dssp             SSEEEECCS-----------HHHHHTHHHHTT----TSSEEEEECCSSSSHHHHHHHHHCSEEEEEECSCTTT-HHHHHH
T ss_pred             CCcEEecCc-----------HHHHHHHHHhcC----CCCEEEEECCCCCCHHHHHHHHHCCEEEEEecCCHHH-HHHHHH
Confidence            355555432           344455555544    7999999999999988899999999999999999999 999999


Q ss_pred             HHHHHhcCC----CceEEEEecccCCcccccccccHHHHHHHhCCcee-EEecCChHHHHHHhcCCceEeeCCCCHHHHH
Q 047623          210 TGLLECDGI----RDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL-GVIPEDSEVIRSTNRGYPLVLNKPPTLAGLA  284 (340)
Q Consensus       210 ~~~l~~~~~----~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~-~~Ip~d~~~~~a~~~g~~v~~~~~~s~~~~~  284 (340)
                      ++.++..+.    ..+++|+|+++++....   ....+..+.+|.+++ +.||++..+.++...|.|+.+ .|+++++++
T Consensus       118 ~~~l~~~~~~~~~~~~~vv~N~~~~~~~~~---~~~~~~l~~~~~~vl~~~Ip~~~~~~~a~~~g~~v~~-~~~s~~~~~  193 (206)
T 4dzz_A          118 VVTVLEAQAYSRKVEARFLITRKIEMATML---NVLKESIKDTGVKAFRTAITQRQVYVKSILDGDSVFE-SSDGAAKGE  193 (206)
T ss_dssp             HHHHHTTSCGGGCCEEEEEECSBCTTEEEE---HHHHHHHHHHTCCBCSSCCBCCHHHHHHHHTTCCGGG-SSCHHHHHH
T ss_pred             HHHHHHHHHhCCCCcEEEEEeccCCCchHH---HHHHHHHHHcCCceeeccccccHHHHHHHHcCCCccc-CCchHHHHH
Confidence            999986542    24599999998764322   234555666899988 899999999999999999999 999999999


Q ss_pred             HHHHHHHHHhcc
Q 047623          285 FEQAAWRLVEQD  296 (340)
Q Consensus       285 ~~~la~~i~~~~  296 (340)
                      |.+|+++|+++.
T Consensus       194 ~~~la~~i~~~l  205 (206)
T 4dzz_A          194 IEILTKEIVRIF  205 (206)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            999999998764

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=100.00  E-value=3.2e-32  Score=241.27  Aligned_cols=230  Identities=21%  Similarity=0.243  Sum_probs=176.7

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCc------ccHHHhhcCC----------
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVN------YTVVEVLNGD----------  115 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~------~~l~~~l~~~----------  115 (340)
                      .|+| |+|||+||||+|+|||..||++|+||++||+|++ ++++.+||......      .++.+++.+.          
T Consensus         2 kI~v-s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~-~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (254)
T 3kjh_A            2 KLAV-AGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDPD-SCLGQTLGLSIEEAYAITPLIEMKDEIREKTGDGGLLILN   79 (254)
T ss_dssp             EEEE-ECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECTT-SCHHHHTTCCHHHHHTSCCGGGCHHHHHHHHCSSSCCCSS
T ss_pred             EEEE-ecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC-cChHHHhCCCcccccccccchhHHHHHHhhccCCcccccC
Confidence            3788 7899999999999999999999999999999998 99999999875421      2244444432          


Q ss_pred             Cccccceec-ccccCceeE-eecCCCCCCCCCCcch--hhHHHHHHHH-HHhccCCCCEEEEcCCCCCCHHHHHHHhcCC
Q 047623          116 CRLDQALVR-DKRWSNFEL-LCISKPRSKLPLGFGG--KALTWVVEAL-KSRQEGSPDFILIDCPAGIDAGFITAITPAN  190 (340)
Q Consensus       116 ~~~~~~~~~-~~~~~~l~~-l~~~~~~~~~~~~~~~--~~~~~l~~~l-~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad  190 (340)
                      ..++..... .....++++ ++.+............  ..+..+++.+ ++    +||+|||||||+.+.....++..||
T Consensus        80 ~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~----~yD~viiD~pp~~~~~~~~~l~~aD  155 (254)
T 3kjh_A           80 PKVDGDLDKYGRYIDDKIFLIRMGEIKKGGSQCYCRENSFLGSVVSALFLD----KKEAVVMDMGAGIEHLTRGTAKAVD  155 (254)
T ss_dssp             CCCTTSGGGSSEESSSSEEEEECCCCCCCCSSCCHHHHHHHHHHHHHHHHT----CCSEEEEEECTTCTTCCHHHHTTCS
T ss_pred             CchhccHHhcccccCCeEEEEEecccccCCCCCCcchHHHHHHHHHHhccC----CCCEEEEeCCCcccHHHHHHHHHCC
Confidence            111111000 011245666 6555433222222222  2355666666 44    8999999999999888889999999


Q ss_pred             eEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhC-CceeEEecCChHHHHHHhcC
Q 047623          191 EAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLG-LALLGVIPEDSEVIRSTNRG  269 (340)
Q Consensus       191 ~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g-~~v~~~Ip~d~~~~~a~~~g  269 (340)
                      .+++|+.++..++..+.++.+.+...+...+++|+|+++++.       ..+++.+.++ .++.+.||++..+.++...|
T Consensus       156 ~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~~~-------~~~~~~~~~~~~~~~~~Ip~~~~~~~a~~~g  228 (254)
T 3kjh_A          156 MMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRNIK-------EEKLIKKHLPEDKILGIIPYNELFIELSLKG  228 (254)
T ss_dssp             EEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECCHH-------HHHHHHHHSCGGGEEEEEECCHHHHSCSSSS
T ss_pred             EEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCChh-------HHHHHHHHhcCCcccccccCcHHHHHHHhCC
Confidence            999999999999999999999888888888999999998542       2556778887 77889999999999999999


Q ss_pred             CceEeeCCCCHHHHHHHHHHHHHHhcc
Q 047623          270 YPLVLNKPPTLAGLAFEQAAWRLVEQD  296 (340)
Q Consensus       270 ~~v~~~~~~s~~~~~~~~la~~i~~~~  296 (340)
                      +|+.++.|  +++++|.+|+++|.++.
T Consensus       229 ~~~~~~~~--~~~~~~~~la~~l~~~~  253 (254)
T 3kjh_A          229 EEIWQSTN--PAFVNLHDIYQKLRLEV  253 (254)
T ss_dssp             CCTTSTTS--TTHHHHHHHHHHHHHHH
T ss_pred             CccccCCc--HHHHHHHHHHHHHHhhc
Confidence            99988875  68999999999998875

>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}

Probab=99.98  E-value=6.1e-32  Score=244.00  Aligned_cols=221  Identities=16%  Similarity=0.164  Sum_probs=184.1

Q ss_pred             CCCCccccccCCC-----C--------------CCCCCCCCCCChhhHHHHHhhCCCCCCCCCCCEEEEEEcCCCCCcHH
Q 047623            5 IPSPTIQFKPLFP-----S--------------KTIKPLKPFSSKSSIQSVLQWNRKPELAGETPRVVVITSGKGGVGKT   65 (340)
Q Consensus         5 ~~~p~~g~~p~~~-----~--------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~iI~v~s~kGGvGKT   65 (340)
                      +..|++|.||..+     .              .++....|.+...+..+.++.++........+++|+|+|+|||+|||
T Consensus        28 ~g~pvlg~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKT  107 (286)
T 3la6_A           28 HGISVYASIPLSEWQKARDSVKTIKGIKRYKQSQLLAVGNPTDLAIEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGMT  107 (286)
T ss_dssp             TTCCEEEEEECCHHHHHTTC----------CCCSCHHHHCTTCHHHHHHHHHHHHHHHHSTTTTCCEEEEEESSSSSSHH
T ss_pred             CCCCeEEEecCchhhhhhhhccccccccccccCceEEEcCCCCHHHHHHHHHHHHHhhhccCCCCeEEEEECCCCCCcHH
Confidence            5789999999753     1              11223467777778778887777665567778999999999999999


Q ss_pred             HHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCceeEeecCCCCCCCCC
Q 047623           66 TTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPL  145 (340)
Q Consensus        66 t~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~  145 (340)
                      |+|+|||..||+.|++|++||+|++.++++.+|+.++.  .++.+++.+...+++.+.... .++++++|++........
T Consensus       108 tva~nLA~~lA~~G~rVLLID~D~~~~~l~~~~~~~~~--~gl~~~l~~~~~~~~~i~~~~-~~~l~vl~~g~~~~~~~e  184 (286)
T 3la6_A          108 FVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNV--NGLSEILIGQGDITTAAKPTS-IAKFDLIPRGQVPPNPSE  184 (286)
T ss_dssp             HHHHHHHHHHHTTTCCEEEEECCTTTCCHHHHHTCCCT--TCHHHHHHTSSCTTTTCEECS-STTEEEECCCSCCSCHHH
T ss_pred             HHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHhCCCCC--CCHHHHccCCCCHHHheeccC-CCCEEEEeCCCCCCCHHH
Confidence            99999999999999999999999999999999998765  789999999888887776643 489999999887655444


Q ss_pred             CcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHH-HHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEE
Q 047623          146 GFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAG-FITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMV  224 (340)
Q Consensus       146 ~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~-~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vv  224 (340)
                      .+....+..+++.+++    +||+||||+||..... ...+...||.+++|+.++..+...+.+.++.++..+.+.+++|
T Consensus       185 ll~~~~l~~ll~~l~~----~yD~VIIDtpp~~~~~da~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvV  260 (286)
T 3la6_A          185 LLMSERFAELVNWASK----NYDLVLIDTPPILAVTDAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVI  260 (286)
T ss_dssp             HHTSHHHHHHHHHHHH----HCSEEEEECCCTTTCTHHHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             HhchHHHHHHHHHHHh----CCCEEEEcCCCCcchHHHHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEE
Confidence            4556778888888887    6999999999987544 3445567999999999999999999999999999999999999


Q ss_pred             EecccCCc
Q 047623          225 VNRVRTDM  232 (340)
Q Consensus       225 iN~~~~~~  232 (340)
                      +|+++++.
T Consensus       261 lN~v~~~~  268 (286)
T 3la6_A          261 LNSIFRRA  268 (286)
T ss_dssp             EEEECCCC
T ss_pred             EcCccccc
Confidence            99998754

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*

Probab=99.97  E-value=1e-31  Score=241.02  Aligned_cols=222  Identities=18%  Similarity=0.218  Sum_probs=177.8

Q ss_pred             CCCCCccccccCCCCC--------CCCCCCCCCChhhHHHHHhhCCCCCCCCCCCEEEEEEcCCCCCcHHHHHHHHHHHH
Q 047623            4 LIPSPTIQFKPLFPSK--------TIKPLKPFSSKSSIQSVLQWNRKPELAGETPRVVVITSGKGGVGKTTTTANVGLSL   75 (340)
Q Consensus         4 ~~~~p~~g~~p~~~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~iI~v~s~kGGvGKTt~a~~LA~~l   75 (340)
                      .++.|+||.||..+..        ......|.+...+..+.++.+.......+.+++|+|+|+|||+||||+|+|||..|
T Consensus        28 ~~~~p~lg~iP~~~~~~~~~~~~~~~~~~~~~~~~~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTt~a~nLA~~l  107 (271)
T 3bfv_A           28 ELGLPVLGSIQKFNMTNTRRSTSSLIVHEQPKSPISEKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAY  107 (271)
T ss_dssp             HHCCCEEEEEECCCTTTTTSCSSSCHHHHCTTSHHHHHHHHHHHHHHHSSTTCCCCEEEEECSSTTSSHHHHHHHHHHHH
T ss_pred             HhCCCeEEEecccccccccccccceeeecCCCCHHHHHHHHHHHHHHhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHH
Confidence            3578999999986431        11123566666677777776665555567789999999999999999999999999


Q ss_pred             HHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCceeEeecCCCCCCCCCCcchhhHHHH
Q 047623           76 ARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWV  155 (340)
Q Consensus        76 a~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l  155 (340)
                      |+.|+||++||+|++.++++.+|+.++.  .++.+++.+...+++.+.... .++++++|++.........+....+..+
T Consensus       108 A~~G~rVLLID~D~~~~~l~~~~~~~~~--~gl~~~L~~~~~l~~~i~~~~-~~~l~vl~~g~~~~~~~ell~~~~l~~l  184 (271)
T 3bfv_A          108 AQAGYKTLIVDGDMRKPTQHYIFNLPNN--EGLSSLLLNWSTYQDSIISTE-IEDLDVLTSGPIPPNPSELITSRAFANL  184 (271)
T ss_dssp             HHTTCCEEEEECCSSSCCHHHHTTCCCS--SSHHHHHTTSSCHHHHEEECS-STTEEEECCCSCCSCHHHHHTSHHHHHH
T ss_pred             HhCCCeEEEEeCCCCCccHHHHcCCCCC--CCHHHHhCCCCCHHHcEEeCC-CCCEEEEECCCCCCCHHHHhChHHHHHH
Confidence            9999999999999999999999998764  789999998888777766543 4899999988765443333445667788


Q ss_pred             HHHHHHhccCCCCEEEEcCCCCCCHH-HHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCc
Q 047623          156 VEALKSRQEGSPDFILIDCPAGIDAG-FITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDM  232 (340)
Q Consensus       156 ~~~l~~~~~~~~D~VIiD~~~~~~~~-~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~  232 (340)
                      ++.+++    +||+||||+||..... ...+...+|.+++|+.++..++..+.+.++.++..+.+.+++|+|+++...
T Consensus       185 l~~l~~----~yD~VIIDtpp~~~~~d~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~~  258 (271)
T 3bfv_A          185 YDTLLM----NYNFVIIDTPPVNTVTDAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKDK  258 (271)
T ss_dssp             HHHHHH----HCSEEEEECCCTTTCSHHHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC--
T ss_pred             HHHHHh----CCCEEEEeCCCCchHHHHHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCCC
Confidence            888877    6999999999976543 334456799999999999999999999999999888888999999998753

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*

Probab=99.97  E-value=1.7e-29  Score=225.75  Aligned_cols=219  Identities=22%  Similarity=0.267  Sum_probs=162.1

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccc
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKR  127 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  127 (340)
                      +++++|+|+|+|||+||||+|+|||..|+++|++|++||+|++.+++..+++.....      ++.....+....   ..
T Consensus        16 ~~~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~~~l~~~l~~~~~~------~~~~~~~~~~~~---~~   86 (262)
T 2ph1_A           16 KIKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLGPSIPILFGLRNAR------IAVSAEGLEPVL---TQ   86 (262)
T ss_dssp             TCSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSCCHHHHHTTCCSCC------CEEETTEEECEE---CT
T ss_pred             cCCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHhcCCCcc------ccccccCccccc---cC
Confidence            567999999999999999999999999999999999999999977898999887542      111111111111   13


Q ss_pred             cCceeEeecCCCCCCCCCC--cchhhHHHHHHHHHHhcc-CCCCEEEEcCCCCCCHHHHH--HHhcCCeEEEEeCCChhh
Q 047623          128 WSNFELLCISKPRSKLPLG--FGGKALTWVVEALKSRQE-GSPDFILIDCPAGIDAGFIT--AITPANEAVLVTTPDITS  202 (340)
Q Consensus       128 ~~~l~~l~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~-~~~D~VIiD~~~~~~~~~~~--~l~~ad~viiv~~~~~~s  202 (340)
                      .++++++|++.........  .........++.+.+.+. ++||||||||||+.+.....  .+..+|.+++|+.++..+
T Consensus        87 ~~~l~vlp~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s  166 (262)
T 2ph1_A           87 KYGIKVMSMQFLLPKENTPVIWRGPLIAGMIREFLGRVAWGELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELT  166 (262)
T ss_dssp             TTCCEEECGGGGSTTCSSCCCCCSHHHHHHHHHHHHSBCCCSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCC
T ss_pred             CCCeEEEeccccCCCcccchhhcCchHHHHHHHHHHHhhccCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccch
Confidence            4789999887654332211  111222233333333344 68999999999998754433  334799999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCceEEEEecccCCcc----ccc--ccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEee
Q 047623          203 LRDADRVTGLLECDGIRDIKMVVNRVRTDMI----KGE--DMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLN  275 (340)
Q Consensus       203 ~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~----~~~--~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~  275 (340)
                      +..+.++++.++..+.+.+++|+|+++....    ...  .....+++.+.+|.++++.||++..+.++...|+|+...
T Consensus       167 ~~~~~~~~~~l~~~~~~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~Ip~~~~~~~a~~~g~~~~~~  245 (262)
T 2ph1_A          167 AVIVEKAINMAEETNTSVLGLVENMSYFVCPNCGHKSYIFGEGKGESLAKKYNIGFFTSIPIEEELIKLADSGRIEEYE  245 (262)
T ss_dssp             HHHHHHHHHHHHTTTCCEEEEEETTCCEECTTTCCEECTTCCCCHHHHHHHTTCSEEEECCBCHHHHHHHHTTCGGGCC
T ss_pred             HHHHHHHHHHHHhCCCCEEEEEECCCccCCcccccccccccccHHHHHHHHcCCCeEEEeeCchHHHHhccCCceeecc
Confidence            9999999999988888889999999874210    000  112467888999999999999999999999999998643

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}

Probab=99.97  E-value=2.2e-30  Score=235.72  Aligned_cols=237  Identities=18%  Similarity=0.157  Sum_probs=177.0

Q ss_pred             CCEEEEEEc--CCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhcc----CCcCCCcccHHHhhcCCCccccce
Q 047623           49 TPRVVVITS--GKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLL----GLENRVNYTVVEVLNGDCRLDQAL  122 (340)
Q Consensus        49 ~~~iI~v~s--~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~----~~~~~~~~~l~~~l~~~~~~~~~~  122 (340)
                      +.++|+|++  +|||+||||+|+|||..|+++|++|++||+|++ +++..++    +.+. +..++.+++.+.. ..+.+
T Consensus        33 ~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q-~~~~~~l~~~~~~~~-~~~~l~~~l~~~~-~~~~~  109 (298)
T 2oze_A           33 KNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQ-ATLTKDLAKTFKVEL-PRVNFYEGLKNGN-LASSI  109 (298)
T ss_dssp             HCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTT-CHHHHHHTTTSCCCC-CSSCHHHHHHHTC-CGGGC
T ss_pred             CCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCC-CCHHHHHHHhccCCC-CcccHHHHHhcCC-hhhhh
Confidence            356888888  899999999999999999999999999999999 5554333    3332 2367878776553 33334


Q ss_pred             ecccccCceeEeecCCCCCCCCCCc-------chhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEE
Q 047623          123 VRDKRWSNFELLCISKPRSKLPLGF-------GGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLV  195 (340)
Q Consensus       123 ~~~~~~~~l~~l~~~~~~~~~~~~~-------~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv  195 (340)
                      .+.  .++++++|++..........       ....+..+++.    ++++||||||||||+.+....+++..||.+++|
T Consensus       110 ~~~--~~~l~vlp~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~----l~~~yD~IiiD~pp~~~~~~~~~l~~aD~viiv  183 (298)
T 2oze_A          110 VHL--TDNLDLIPGTFDLMLLPKLTRSWTFENESRLLATLLAP----LKSDYDLIIIDTVPTPSVYTNNAIVASDYVMIP  183 (298)
T ss_dssp             EES--SSSEEEECCCGGGGGHHHHTTTSCHHHHHTHHHHHHGG----GGGGCSEEEEEECSSCSHHHHHHHHHCSEEEEE
T ss_pred             ccc--CCCeEEEeCCchHHHHHHHhhhhccccHHHHHHHHHHH----HhcCCCEEEEECCCCccHHHHHHHHHCCeEEEE
Confidence            333  38999999876543211000       01123333333    345799999999999999888899999999999


Q ss_pred             eCCChhhHHHHHHHHHHHHh------cCCCceEEEEecccCCcccccccccHHHHHHHhCC--cee-EEecCChHHHHHH
Q 047623          196 TTPDITSLRDADRVTGLLEC------DGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGL--ALL-GVIPEDSEVIRST  266 (340)
Q Consensus       196 ~~~~~~s~~~~~~~~~~l~~------~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~--~v~-~~Ip~d~~~~~a~  266 (340)
                      +.++..++..+.++++.+..      .+.+.+++|+|+++.+...  .....+++.+.++.  +++ ..||++..+.++.
T Consensus       184 ~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~Ip~~~~~~~a~  261 (298)
T 2oze_A          184 LQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTDSAT--IKSNLEELYKQHKEDNLVFQNIIKRSNKVSTWS  261 (298)
T ss_dssp             ECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTTCHH--HHHHHHHHHHHTTTTCCBCSSCEECCHHHHHHH
T ss_pred             ecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCCcHH--HHHHHHHHHHHhccccccccccccccHHHHHHH
Confidence            99999999999998888875      2556789999999876421  12235677778875  555 6899999999999


Q ss_pred             hcCCceEeeCCCCHHHHHHHHHHHHHHhccc
Q 047623          267 NRGYPLVLNKPPTLAGLAFEQAAWRLVEQDS  297 (340)
Q Consensus       267 ~~g~~v~~~~~~s~~~~~~~~la~~i~~~~~  297 (340)
                      ..|+|+.+ ...++++++|.+|+++|+++..
T Consensus       262 ~~G~~v~~-~~~~~~~~~~~~la~ei~~~~~  291 (298)
T 2oze_A          262 KNGITEHK-GYDKKVLSMYKNVFFEMLERII  291 (298)
T ss_dssp             HHCCCSSS-TTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCChhh-hcChHHHHHHHHHHHHHHHHHH
Confidence            99999886 2234689999999999988753

>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}

Probab=99.97  E-value=2.3e-30  Score=241.64  Aligned_cols=247  Identities=17%  Similarity=0.148  Sum_probs=157.2

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcC-------CCc----------ccHHHhh
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLEN-------RVN----------YTVVEVL  112 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~-------~~~----------~~l~~~l  112 (340)
                      ||+|+|+|+||||||||+|+|||..||++|+||++||+|++.+....+++...       ...          .++.+++
T Consensus         1 MkvIav~s~KGGvGKTT~a~nLA~~LA~~G~rVLlID~D~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~l   80 (361)
T 3pg5_A            1 MRTISFFNNKGGVGKTTLSTNVAHYFALQGKRVLYVDCDPQCNATQLMLTEEQTESIYLDGLNDEVAERNSLAKTVYAIF   80 (361)
T ss_dssp             CEEEEBCCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTTCTTHHHHSCHHHHHHHCCC----CGGGGGHHHHSGGGGG
T ss_pred             CeEEEEEcCCCCCcHHHHHHHHHHHHHhCCCcEEEEEcCCCCChhhhhcCchhhhhhhcccccccccccccccCCHHHHH
Confidence            68999999999999999999999999999999999999999554455544321       111          4566665


Q ss_pred             c----CCCcccc--ceecccccCceeEeecCCCCCCCCCCcch----------------hhHHHHHHHHHHhccCCCCEE
Q 047623          113 N----GDCRLDQ--ALVRDKRWSNFELLCISKPRSKLPLGFGG----------------KALTWVVEALKSRQEGSPDFI  170 (340)
Q Consensus       113 ~----~~~~~~~--~~~~~~~~~~l~~l~~~~~~~~~~~~~~~----------------~~~~~l~~~l~~~~~~~~D~V  170 (340)
                      .    +...+.+  .+.. ...++++++|++.........+..                ..+..+++.+.+  ...||||
T Consensus        81 ~~~~~~~~~~~~~~~~~~-~~~~~L~llp~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~--~~~yD~V  157 (361)
T 3pg5_A           81 VPLREGESQIAAEITPMR-SERFGVDVLPGHPALSQIEDLMSDSWQSALGRQTGPFRRIHWAGQLAHAMER--DDRYDVI  157 (361)
T ss_dssp             HHHHTTCSSCCCCCCCBC-CTTTTSEEECCCGGGGTHHHHHHHHHHHHHTTCHHHHTTTTHHHHHHHHHHH--TTCCSEE
T ss_pred             HHHhcCCCChhhcceeec-cCCCCEEEEeCCchHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHhh--ccCCCEE
Confidence            4    5555544  1222 234799999988765443221111                224455555543  2269999


Q ss_pred             EEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhc--------------------C-------------
Q 047623          171 LIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECD--------------------G-------------  217 (340)
Q Consensus       171 IiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~--------------------~-------------  217 (340)
                      ||||||+++....+++..||.+|+|+.++..++.++.++++.++..                    .             
T Consensus       158 IID~pP~l~~~~~~aL~~aD~viip~~~~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  237 (361)
T 3pg5_A          158 FFDVGPSLGPFNRTVLLGCDAFVTPTATDLFSFHAFGNLARWFDAWVTQYAEIHEGNMAEWKKYSADVEAKTRPLRLGGF  237 (361)
T ss_dssp             EEECCSCCSHHHHHHHTTCSEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSTHHHHTSSSCTTSS
T ss_pred             EEECCCCcCHHHHHHHHHCCEEEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCccccccccccccccc
Confidence            9999999999999999999999999999999999999888888643                    1             


Q ss_pred             ----CCceEEEEecccCCcccc----c--ccccHHHHHHHh-----------CCceeEEecCChH-HHHHHhcCCceEee
Q 047623          218 ----IRDIKMVVNRVRTDMIKG----E--DMMSVLDIQEML-----------GLALLGVIPEDSE-VIRSTNRGYPLVLN  275 (340)
Q Consensus       218 ----~~~~~vviN~~~~~~~~~----~--~~~~~~~i~~~~-----------g~~v~~~Ip~d~~-~~~a~~~g~~v~~~  275 (340)
                          .+.+|+|+|+++.+....    .  ...-.+++....           ....++.||.... +..+...|+|++..
T Consensus       238 ~~~~l~~lG~v~n~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~i~~~~s~~~~aq~~~~Pi~~l  317 (361)
T 3pg5_A          238 DGEGLRYLGYTTLEYVKRRANGQEQLVGAFERFRGRFAAEAERISNSLSKHSNSTLLGHVPHMHSMPATAQDVHAPIMEL  317 (361)
T ss_dssp             SSSCCEEEEEEECC-----------------TTHHHHHHHHHHHHHHSCSSCCCCEEEECC-------------------
T ss_pred             cccccceeeEEEEcchhhcCCCchhhhHHHHHHHHHHHHHHHhccccccCCCCccccccCCchhhHHHHHHHHCCCeEEC
Confidence                556999999999865322    1  111123344334           3445789998777 56999999999999


Q ss_pred             CC-----------CCHHHHHHHHHHHHHHhccccc
Q 047623          276 KP-----------PTLAGLAFEQAAWRLVEQDSMK  299 (340)
Q Consensus       276 ~~-----------~s~~~~~~~~la~~i~~~~~~~  299 (340)
                      .+           ...+.+.|.+||.+|+++.+.+
T Consensus       318 ~~~~~~~g~~~~~~~~~~~~~~~la~~i~~~~~~~  352 (361)
T 3pg5_A          318 SSSDRVRGAQINQRNAYAEKINSVAANVYKALFPN  352 (361)
T ss_dssp             ---------------CCHHHHHHHHHHHHHHHCCC
T ss_pred             chhcCCccHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            76           3468999999999999988654

>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A

Probab=99.97  E-value=4.1e-31  Score=239.24  Aligned_cols=229  Identities=17%  Similarity=0.106  Sum_probs=166.4

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccccc
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRW  128 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  128 (340)
                      |+++|+|+|+|||+||||+|+|||..|+++|++|++||+|+..+++..+++....    +.+...      .     ...
T Consensus         3 M~kvI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~~q~~l~~~l~~~~~----~~~~~~------~-----~~~   67 (286)
T 2xj4_A            3 ETRVIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDLRQRTSARFFENRRA----WLDNKK------I-----ELP   67 (286)
T ss_dssp             -CEEEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHHHH----HHHHHT------C-----CCC
T ss_pred             CCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCCCHHHHhCCChh----HhHhcc------c-----cCC
Confidence            6789999999999999999999999999999999999999933888888865431    111110      0     011


Q ss_pred             Cce-eEeecCC-CCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHH
Q 047623          129 SNF-ELLCISK-PRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDA  206 (340)
Q Consensus       129 ~~l-~~l~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~  206 (340)
                      .++ +++|+.. .............+..+++.+.+    +||||||||||+.+.....++..||.+|+|+.++..++..+
T Consensus        68 ~~l~~vl~~~~~~~~~~~~~~~~~~l~~~l~~l~~----~yD~viiD~p~~~~~~~~~~l~~aD~viiv~~~~~~~~~~~  143 (286)
T 2xj4_A           68 EPLALNLSDNDVALAERPEEEQVAGFEAAFARAMA----ECDFILIDTPGGDSAITRMAHGRADLVVTPMNDSFVDFDML  143 (286)
T ss_dssp             CCEEECSSSCHHHHTTSCHHHHHHHHHHHHHHHHH----HCSEEEEECCSSCCHHHHHHHHTCSEEEEEEESSHHHHTTT
T ss_pred             CchheEeeCCCCCCcChhhhhhHHHHHHHHHHHHh----cCCEEEEcCCCCccHHHHHHHHHCCEEEEEEcCCccHHHHH
Confidence            456 6776522 11111111223345556666655    69999999999999989999999999999999999998887


Q ss_pred             HHHHHH-------------H---Hh------cCC-CceEEEEecccCCc-ccccc-cccHHHHHHHhCCceeEEecCChH
Q 047623          207 DRVTGL-------------L---EC------DGI-RDIKMVVNRVRTDM-IKGED-MMSVLDIQEMLGLALLGVIPEDSE  261 (340)
Q Consensus       207 ~~~~~~-------------l---~~------~~~-~~~~vviN~~~~~~-~~~~~-~~~~~~i~~~~g~~v~~~Ip~d~~  261 (340)
                      .++++.             +   +.      ... .++++|+|++++.. ..... ...++++.+.+|..+.+.||++..
T Consensus       144 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~vV~N~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~Ip~~~~  223 (286)
T 2xj4_A          144 GTVDPVTLELTKPSLYSLTVWEGRKQRALSGQRQAMDWVVLRNRLATTEARNRKRLEDRLNALAKRVGFRIGPGLRDRVI  223 (286)
T ss_dssp             EEECTTTCCEEEECHHHHHHHHHHHHHHHHCSSCCCEEEEEEECCTTCCGGGHHHHHHHHHHHHHHHCCEEEECCCCCHH
T ss_pred             HHHHHHhhhccccchhhhhhhcchhhhhhccCCccccEEEEEeeecCCCcchhHHHHHHHHHHHHHcCCccCCCCCchHH
Confidence            554444             4   31      212 35789999998764 21111 111222223378877789999999


Q ss_pred             HHHHHhcCCceEeeCC----------CCHHHHHHHHHHHHHHhcc
Q 047623          262 VIRSTNRGYPLVLNKP----------PTLAGLAFEQAAWRLVEQD  296 (340)
Q Consensus       262 ~~~a~~~g~~v~~~~~----------~s~~~~~~~~la~~i~~~~  296 (340)
                      +.++...|+|+.++.|          +++++++|.+|+++|...+
T Consensus       224 ~~~a~~~g~~v~~~~~~~~~~~~~~~~s~~~~~~~~la~~l~~~~  268 (286)
T 2xj4_A          224 YRELFPFGLTIADLSPQVRPVPVSLQHLAARQELRALMHSLGLSA  268 (286)
T ss_dssp             HHHHGGGTCCGGGCBTTBCCSCCCSTTHHHHHHHHHHHHHTTCGG
T ss_pred             HHHHHHcCCCHHHhCccccccccccccchHHHHHHHHHHHhCccc
Confidence            9999999999999988          7899999999999997654

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=99.97  E-value=7.7e-30  Score=220.40  Aligned_cols=196  Identities=20%  Similarity=0.198  Sum_probs=158.4

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCc
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSN  130 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  130 (340)
                      ++|+|+|+|||+||||+|+|||..|+++| +|++||+|++ +++..+++. ++              +          +.
T Consensus         1 kvI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q-~~~~~~~~~-~~--------------l----------~~   53 (209)
T 3cwq_A            1 MIITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPN-RSATGWGKR-GS--------------L----------PF   53 (209)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTT-CHHHHHHHH-SC--------------C----------SS
T ss_pred             CEEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCC-CCHHHHhcC-CC--------------C----------Cc
Confidence            48999999999999999999999999999 9999999999 666655543 10              0          10


Q ss_pred             eeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCC-CCHHHHHHHhcCCeEEEEeCCChhhHHHHHHH
Q 047623          131 FELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAG-IDAGFITAITPANEAVLVTTPDITSLRDADRV  209 (340)
Q Consensus       131 l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~-~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~  209 (340)
                       ++++..                 .++.+.+    .|||||||+||+ .+.....++..||.+++|+.++..++..+.++
T Consensus        54 -~vi~~~-----------------~l~~l~~----~yD~viiD~p~~~~~~~~~~~l~~aD~viiv~~~~~~~~~~~~~~  111 (209)
T 3cwq_A           54 -KVVDER-----------------QAAKYAP----KYQNIVIDTQARPEDEDLEALADGCDLLVIPSTPDALALDALMLT  111 (209)
T ss_dssp             -EEEEGG-----------------GHHHHGG----GCSEEEEEEECCCSSSHHHHHHHTSSEEEEEECSSHHHHHHHHHH
T ss_pred             -ceeCHH-----------------HHHHhhh----cCCEEEEeCCCCcCcHHHHHHHHHCCEEEEEecCCchhHHHHHHH
Confidence             333321                 3344444    799999999999 88888899999999999999999999999999


Q ss_pred             HHHHHhcCCCceEEEEecccCCc-ccccccccHHHHHHHhCCcee-EEecCChHHHHHHhcCCceEee-CCCC-HHHHHH
Q 047623          210 TGLLECDGIRDIKMVVNRVRTDM-IKGEDMMSVLDIQEMLGLALL-GVIPEDSEVIRSTNRGYPLVLN-KPPT-LAGLAF  285 (340)
Q Consensus       210 ~~~l~~~~~~~~~vviN~~~~~~-~~~~~~~~~~~i~~~~g~~v~-~~Ip~d~~~~~a~~~g~~v~~~-~~~s-~~~~~~  285 (340)
                      ++.++.....++++|+|+++++. ....   ...+..+.+|.+++ +.||++..+.++...|+|+.++ .|++ +++++|
T Consensus       112 ~~~l~~~~~~~~~vv~N~~~~~~~~~~~---~~~~~l~~~g~~v~~~~Ip~~~~~~~a~~~g~~v~~~~~p~~~~~~~~~  188 (209)
T 3cwq_A          112 IETLQKLGNNRFRILLTIIPPYPSKDGD---EARQLLTTAGLPLFKRGIKRYSAFQKASLNGVVVSEVSDSKAGIAWSDY  188 (209)
T ss_dssp             HHHHHHTCSSSEEEEECSBCCTTSCHHH---HHHHHHHHTTCCBCSSCCBCCTHHHHHHHHTSCTTTSSSTTHHHHHHHH
T ss_pred             HHHHHhccCCCEEEEEEecCCccchHHH---HHHHHHHHcCCchhhccCCCcHHHHHHHHcCCCHHHhCCccchhHHHHH
Confidence            99998743335899999998764 2211   23333444888888 7999999999999999999999 8999 999999


Q ss_pred             HHHHHHHHhcccc
Q 047623          286 EQAAWRLVEQDSM  298 (340)
Q Consensus       286 ~~la~~i~~~~~~  298 (340)
                      .+++++|+++...
T Consensus       189 ~~l~~el~~~~~~  201 (209)
T 3cwq_A          189 KATGKEIVEEILT  201 (209)
T ss_dssp             HHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999987543

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}

Probab=99.97  E-value=3.4e-30  Score=234.33  Aligned_cols=220  Identities=15%  Similarity=0.146  Sum_probs=175.1

Q ss_pred             CCCccccccCCCCC---------C---------------CCCCCCCCChhhHHHHHhhCCCCCCCCCCCEEEEEEcCCCC
Q 047623            6 PSPTIQFKPLFPSK---------T---------------IKPLKPFSSKSSIQSVLQWNRKPELAGETPRVVVITSGKGG   61 (340)
Q Consensus         6 ~~p~~g~~p~~~~~---------~---------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~iI~v~s~kGG   61 (340)
                      +.|+||.||..+..         .               .....|.+...+..+.++.++........+++|+|+|+|||
T Consensus        36 g~pvlg~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG  115 (299)
T 3cio_A           36 GISVYATIPMSEWLDKRTRLRKKNLFSNQQRHRTKNIPFLAVDNPADSAVEAVRALRTSLHFAMMETENNILMITGATPD  115 (299)
T ss_dssp             TCCEEEEEECCSHHHHC-----------CCCCCCCCSCCHHHHSTTCHHHHHHHHHHHHHHHHTSSCSCCEEEEEESSSS
T ss_pred             CCCEEEEecCccchhhhhhhhccccccccccccccccceeeecCCCCHHHHHHHHHHHHHHHhccCCCCeEEEEECCCCC
Confidence            78999999976420         0               01124555556666666666554445567799999999999


Q ss_pred             CcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccCceeEeecCCCCC
Q 047623           62 VGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPRS  141 (340)
Q Consensus        62 vGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~  141 (340)
                      +||||+|+|||..||+.|+||++||+|++.++++.+|+..+.  .++.+++.+...+++.+.... .++++++|++....
T Consensus       116 ~GKTtva~nLA~~lA~~G~rVLLID~D~r~~~l~~~~~~~~~--~gl~~~L~~~~~l~~~i~~~~-~~~l~vl~~g~~~~  192 (299)
T 3cio_A          116 SGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNE--HGLSEYLAGKDELNKVIQHFG-KGGFDVITRGQVPP  192 (299)
T ss_dssp             SCHHHHHHHHHHHHHHTTCCEEEEECCTTTCCHHHHTTCCCS--SSHHHHHTTSSCHHHHCEEET-TTTEEEECCCSCCS
T ss_pred             CChHHHHHHHHHHHHhCCCcEEEEECCCCCccHHHHcCCCCC--CCHHHHCcCCCCHHHhhhccC-CCCEEEEECCCCCC
Confidence            999999999999999999999999999988999999998764  689999998888877766543 48999999877654


Q ss_pred             CCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHH-HHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCc
Q 047623          142 KLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGF-ITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRD  220 (340)
Q Consensus       142 ~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~-~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~  220 (340)
                      .....+....+..+++.+++    +||+||||+||...... ..+...+|.+++|+.++..+...+.+.++.++..+.+.
T Consensus       193 ~~~ell~~~~l~~ll~~l~~----~yD~VIIDtpp~~~~~d~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~  268 (299)
T 3cio_A          193 NPSELLMRDRMRQLLEWAND----HYDLVIVDTPPMLAVSDAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNI  268 (299)
T ss_dssp             CHHHHHTSHHHHHHHHHHHH----HCSEEEEECCCTTTCTHHHHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCC
T ss_pred             CHHHHhCHHHHHHHHHHHHh----CCCEEEEcCCCCchhHHHHHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCe
Confidence            43333445667788888877    69999999999875333 33446799999999999999999999999999988888


Q ss_pred             eEEEEecccCCc
Q 047623          221 IKMVVNRVRTDM  232 (340)
Q Consensus       221 ~~vviN~~~~~~  232 (340)
                      .++|+|+++...
T Consensus       269 ~GvVlN~~~~~~  280 (299)
T 3cio_A          269 KGAILNGVIKRA  280 (299)
T ss_dssp             CCEEEEECCCCC
T ss_pred             EEEEEeCCccCC
Confidence            999999998764

>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A

Probab=99.96  E-value=5.9e-29  Score=235.36  Aligned_cols=244  Identities=18%  Similarity=0.199  Sum_probs=170.3

Q ss_pred             CCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHH------CCCcEEEEecCCCCCCchhccCCcCC---CcccHHHhhcCCC
Q 047623           46 AGETPRVVVITSGKGGVGKTTTTANVGLSLAR------LGFSVVAIDADVGLRNLDLLLGLENR---VNYTVVEVLNGDC  116 (340)
Q Consensus        46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~------~g~~VlliD~D~~~~~l~~~~~~~~~---~~~~l~~~l~~~~  116 (340)
                      ..+++++|+|+|+|||+||||+|+|||..||+      +|+||++||+|++ ++++.+|+....   ...++.+.+.+..
T Consensus       104 ~~~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q-~~l~~~l~~~~~~~~~~~~~~~~l~~~~  182 (398)
T 3ez2_A          104 RYSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQ-SSATMFLSHKHSIGIVNATSAQAMLQNV  182 (398)
T ss_dssp             TCCSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTT-CHHHHHHSCHHHHSSCCSCHHHHHHHCC
T ss_pred             CCCCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCC-CChhHHhCCccccccccccHHHHHHhhc
Confidence            45678999999999999999999999999994      6999999999998 789999987642   2244555443221


Q ss_pred             ----ccccceecccccCceeEeecCCCCCCC-------------CCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCC
Q 047623          117 ----RLDQALVRDKRWSNFELLCISKPRSKL-------------PLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGID  179 (340)
Q Consensus       117 ----~~~~~~~~~~~~~~l~~l~~~~~~~~~-------------~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~  179 (340)
                          .+.+.+.. ...++++++|++......             ........+..+++.+    +++||||||||||+.+
T Consensus       183 ~~~~~~~~~i~~-~~~~~l~vlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l----~~~yD~ViiD~pp~~~  257 (398)
T 3ez2_A          183 SREELLEEFIVP-SVVPGVDVMPASIDDAFIASDWRELCNEHLPGQNIHAVLKENVIDKL----KSDYDFILVDSGPHLD  257 (398)
T ss_dssp             CHHHHHHHTCEE-CSSTTEEEECCCTTHHHHHHTHHHHHHHHSTTSCTTSHHHHHTHHHH----TTTCSEEEEEECSCCS
T ss_pred             cccccHHHHhhc-ccCCCceEecCCchhhhHHHHHHHHHHhhccccChHHHHHHHHHHHh----hccCCEEEEeCCCCcc
Confidence                22333332 345899999988653110             0000111122333443    4589999999999999


Q ss_pred             HHHHHHHhcCCeEEEEeCCChhhHHHHH-------HHHHHHHhcC--CCceEEEEecccCCcccccccccHHHHHHHhCC
Q 047623          180 AGFITAITPANEAVLVTTPDITSLRDAD-------RVTGLLECDG--IRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGL  250 (340)
Q Consensus       180 ~~~~~~l~~ad~viiv~~~~~~s~~~~~-------~~~~~l~~~~--~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~  250 (340)
                      ..+.+++..||.+++|+.|+..++..+.       ++++.++..+  .+..++|.|+...... .......+.+++.+|.
T Consensus       258 ~~~~~~l~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~giv~~~~~~~~~-~~~~~~~~~l~~~~g~  336 (398)
T 3ez2_A          258 AFLKNALASANILFTPLPPATVDFHSSLKYVARLPELVKLISDEGCECQLATNIGFMSKLSNK-ADHKYCHSLAKEVFGG  336 (398)
T ss_dssp             HHHHHHHHHCSEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCCCEEEEEEEECSC-HHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEEEecCCCc-hhHHHHHHHHHHHhcc
Confidence            9999999999999999999888655443       3444444443  2334444443332211 1122235677888998


Q ss_pred             cee-EEecCChHHHHHHhcCCceEeeCCCC---------HHHHHHHHHHHHHHhcc
Q 047623          251 ALL-GVIPEDSEVIRSTNRGYPLVLNKPPT---------LAGLAFEQAAWRLVEQD  296 (340)
Q Consensus       251 ~v~-~~Ip~d~~~~~a~~~g~~v~~~~~~s---------~~~~~~~~la~~i~~~~  296 (340)
                      +++ +.||+++.+.++...|+|+.++.|++         .+...+.+++++|.++.
T Consensus       337 ~vl~~~IP~~~~i~~a~~~G~~v~~~~p~s~~~~~~~~~~a~~~~~~l~~~i~~~l  392 (398)
T 3ez2_A          337 DMLDVFLPRLDGFERCGESFDTVISANPATYVGSADALKNARIAAEDFAKAVFDRI  392 (398)
T ss_dssp             GBCSCCEECCHHHHHHHHTTCCTTTSCTTTCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccceeccchHHHHHHHhcCCCceeeccccccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            888 89999999999999999999988763         46677888888887664

>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A

Probab=99.96  E-value=2.6e-29  Score=238.16  Aligned_cols=247  Identities=16%  Similarity=0.192  Sum_probs=138.2

Q ss_pred             CCCCCEEEEEEcCCCCCcHHHHHHHHHHHHH------HCCCcEEEEecCCCCCCchhccCCcCCC---cccHHHhhcCC-
Q 047623           46 AGETPRVVVITSGKGGVGKTTTTANVGLSLA------RLGFSVVAIDADVGLRNLDLLLGLENRV---NYTVVEVLNGD-  115 (340)
Q Consensus        46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la------~~g~~VlliD~D~~~~~l~~~~~~~~~~---~~~l~~~l~~~-  115 (340)
                      ..+++++|+|+|+|||+||||+|+|||..||      ++|++|++||+|++ ++++.+|+.....   ..++.+.+.+. 
T Consensus       107 ~~~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~-~~l~~~l~~~~~~~~~~~~~~~~l~~~~  185 (403)
T 3ez9_A          107 IHKSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQ-ASSTMFLDHTHSIGSILETAAQAMLNNL  185 (403)
T ss_dssp             HSCSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSS-SGGGSCC----------CCHHHHHHHTC
T ss_pred             CCCCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCC-CChhhhhCCCcccCcccccHHHHHHhcc
Confidence            4567899999999999999999999999999      67999999999998 6899999876531   12333433322 


Q ss_pred             ---CccccceecccccCceeEeecCCCCCCCCCC---------cchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHH
Q 047623          116 ---CRLDQALVRDKRWSNFELLCISKPRSKLPLG---------FGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFI  183 (340)
Q Consensus       116 ---~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~---------~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~  183 (340)
                         ..+.+.+.. ...++++++|++.........         ........+++.+.+.++++||||||||||+++..+.
T Consensus       186 ~~~~~~~~~i~~-~~~~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~yD~VIID~pP~~~~~~~  264 (403)
T 3ez9_A          186 DAETLRKEVIRP-TIVPGVDVIPASIDDGFVASQWRELVEEHLPGQNQYEILRRNIIDRVADDYDFIFIDTGPHLDPFLL  264 (403)
T ss_dssp             CHHHHHHTTSEE-CSSTTEEEECCCTTHHHHHHTHHHHHHHHSTTSCTTSHHHHHTGGGSGGGCSEEEEEECSSCSHHHH
T ss_pred             cccccHHHHHhh-cccCCceEEecCcchhhHHHHHHHHHHHhccccchHHHHHHHHHHHHhhcCCEEEEECCCCccHHHH
Confidence               123333333 345899999988653110000         0001111233333333455899999999999999999


Q ss_pred             HHHhcCCeEEEEeCCChhhHHHHH-------HHHHHHHhcCC--Cc--eEEEEecccCCcccccccccHHHHHHHhCCce
Q 047623          184 TAITPANEAVLVTTPDITSLRDAD-------RVTGLLECDGI--RD--IKMVVNRVRTDMIKGEDMMSVLDIQEMLGLAL  252 (340)
Q Consensus       184 ~~l~~ad~viiv~~~~~~s~~~~~-------~~~~~l~~~~~--~~--~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v  252 (340)
                      +++..||.+|+|+.|+..++..+.       ++++.++..+.  ..  +..++|++....   ......+.+.+.+|.++
T Consensus       265 ~al~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~~~~---~~~~~~~~~~~~~g~~v  341 (403)
T 3ez9_A          265 NGLAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMTGKR---DHETSHSLAREVYASNI  341 (403)
T ss_dssp             HHHHHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC---CH---HHHHHHHHHHHHHTTSE
T ss_pred             HHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccCCch---hHHHHHHHHHHHhhHhh
Confidence            999999999999999888665443       34444554433  23  334667765332   12223467778899998


Q ss_pred             e-EEecCChHHHHHHhcCCceEeeCCCC---------HHHHHHHHHHHHHHhccc
Q 047623          253 L-GVIPEDSEVIRSTNRGYPLVLNKPPT---------LAGLAFEQAAWRLVEQDS  297 (340)
Q Consensus       253 ~-~~Ip~d~~~~~a~~~g~~v~~~~~~s---------~~~~~~~~la~~i~~~~~  297 (340)
                      + +.||+++.+.++...|+|+.++.|++         .+.+.+.+++++|.++.+
T Consensus       342 l~~~IP~~~~v~~a~~~G~~v~~~~p~s~~~~~~~~~~~~~~~~~la~~i~~~i~  396 (403)
T 3ez9_A          342 LDSSLPRLDGFERCGESFDTVISANPQSYPGSAEALKKARTEAERFTKAVFDRIE  396 (403)
T ss_dssp             ECCC-----------------------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred             hceeCCchHHHHHHHhcCCCceecCCcccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            8 89999999999999999999988753         467788888888887653

>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}

Probab=99.93  E-value=3e-26  Score=214.86  Aligned_cols=207  Identities=15%  Similarity=0.182  Sum_probs=149.7

Q ss_pred             CCCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCC--------
Q 047623           45 LAGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDC--------  116 (340)
Q Consensus        45 ~~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~--------  116 (340)
                      ...+.+++|+|+|+|||+||||+|+|||..||++|++|++||+| ..++++.+||..+.  .++.+++.+..        
T Consensus       138 ~~~~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D-~~~~l~~~lg~~~~--~~l~d~l~~~~~~~~~~~~  214 (373)
T 3fkq_A          138 GENDKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE-QCGTTDVFFQAEGN--ATMSDVIYSLKSRKANLLL  214 (373)
T ss_dssp             CCTTSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC-TTCCHHHHCCCSCS--CCHHHHHHHHHSCCSCHHH
T ss_pred             ccCCCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC-CCCCHHHHcCCCCC--CCHHHHHhhhhcccccccc
Confidence            34577899999999999999999999999999999999999999 55999999998775  67888776532        


Q ss_pred             ccccceecccccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEe
Q 047623          117 RLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVT  196 (340)
Q Consensus       117 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~  196 (340)
                      .+++.+....  ++++++|++........ +....+..+++.+.+.  ..||+||||+|++.+.....++..||.+++|+
T Consensus       215 ~l~~~i~~~~--~~l~~l~~~~~~~~~~~-~~~~~~~~ll~~l~~~--~~yD~VIID~p~~~~~~~~~~l~~aD~vivv~  289 (373)
T 3fkq_A          215 KLESCIKQSQ--EGVSYFSSTKVALDILE-ISYADIDTLIGNIQGM--DNYDEIIVDLPFSLEIEKLKLLSKAWRIIVVN  289 (373)
T ss_dssp             HHHHTCEECT--TSCEECCCCSSGGGGGG-CCHHHHHHHHHHHHHT--SCCSEEEEECCCCCCHHHHHHHTTCSEEEEEE
T ss_pred             cHHHHhhcCC--CCEEEecCCCChHhHHh-CCHHHHHHHHHHHHhc--CCCCEEEEeCCCCCCHHHHHHHHHCCEEEEEe
Confidence            2344443322  88999988775544332 4667788888888742  37999999999999998999999999999999


Q ss_pred             CCChhhHHHHHHHHHHHHhcC-CCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHH
Q 047623          197 TPDITSLRDADRVTGLLECDG-IRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEV  262 (340)
Q Consensus       197 ~~~~~s~~~~~~~~~~l~~~~-~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~  262 (340)
                      .++..++..+..+.+.++... ...+++|.|+..........   ..++.+..++++++.||+|+..
T Consensus       290 ~~~~~s~~~l~~~~~~l~~l~~~~~~~vv~N~~~v~~~~~~~---~~~fl~~~~l~~lG~IP~D~~~  353 (373)
T 3fkq_A          290 DGSQLSNYKFMRAYESVVLLEQNDDINIIRNMNMIYNKFSNK---NSEMLSNISIKTIGGAPRYEHA  353 (373)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTTSTTCCCGGGEEEEECSCCTT---TCCCCCSCSCEEEEECCCCTTC
T ss_pred             cCCchHHHHHHHHHHHHHHhcccCCcEEEehhHHHHHHHHHH---HHHHhhcCCccceeecCCCCCc
Confidence            999988555544444443221 12345554443211100000   1112223588999999999874

>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*

Probab=99.88  E-value=1.9e-23  Score=193.95  Aligned_cols=239  Identities=18%  Similarity=0.159  Sum_probs=136.4

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHH--HCCCcEEEEecCCCCCCchhccCCcCCCc----ccHHHhhcCCCccccce
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLA--RLGFSVVAIDADVGLRNLDLLLGLENRVN----YTVVEVLNGDCRLDQAL  122 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la--~~g~~VlliD~D~~~~~l~~~~~~~~~~~----~~l~~~l~~~~~~~~~~  122 (340)
                      ..++|+|+|+||||||||+|+|||..||  +.|+||++||+|++ ++++.+||.+....    .++.++.....+....+
T Consensus        16 ~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~-~~l~~~lg~~~~~~~~~v~gl~~l~~~~id~~~~l   94 (354)
T 2woj_A           16 TTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPA-HNLSDAFGEKFGKDARKVTGMNNLSCMEIDPSAAL   94 (354)
T ss_dssp             SSCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS-CCHHHHHTSCCCSSCEECTTCSSEEEEECCHHHHH
T ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC-CCHHHHhCCCCCCCceeecCCCceEEEecCHHHHH
Confidence            4578999999999999999999999999  88999999999997 99999999864211    11122222111111111


Q ss_pred             ecc----cc----------cCceeEeecCCCCCCC-CCCcch---hhHHHHHHHHHHhc---cCCCCEEEEcCCC-CC--
Q 047623          123 VRD----KR----------WSNFELLCISKPRSKL-PLGFGG---KALTWVVEALKSRQ---EGSPDFILIDCPA-GI--  178 (340)
Q Consensus       123 ~~~----~~----------~~~l~~l~~~~~~~~~-~~~~~~---~~~~~l~~~l~~~~---~~~~D~VIiD~~~-~~--  178 (340)
                      ...    ..          ..+++.++.+...... ....+.   ..+..+++.+.+..   +.+||+||||||| +.  
T Consensus        95 ~~~~~~~~~~~~~~~~~~~g~~l~~l~~~~~~~el~~~~pg~~e~~~l~~l~~~l~~~~~~~~~~yD~IIiDtpPtG~tL  174 (354)
T 2woj_A           95 KDMNDMAVSRANNNGSDGQGDDLGSLLQGGALADLTGSIPGIDEALSFMEVMKHIKRQEQGEGETFDTVIFDTAPTGHTL  174 (354)
T ss_dssp             HHHHTC--------------------CCSSHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHTSCCSCSEEEEECCCHHHHH
T ss_pred             HHHHHHHHhhcccccccchhhhhhhccchhHHHHHhcCCCChHHHHHHHHHHHHHhcccccccCCCCEEEECCCCchHHH
Confidence            110    00          0135555422110000 001111   23444555444310   0169999999999 32  


Q ss_pred             -----CHH--------------H-----------------------------HHHHh--cCCeEEEEeCCChhhHHHHHH
Q 047623          179 -----DAG--------------F-----------------------------ITAIT--PANEAVLVTTPDITSLRDADR  208 (340)
Q Consensus       179 -----~~~--------------~-----------------------------~~~l~--~ad~viiv~~~~~~s~~~~~~  208 (340)
                           ...              .                             ...+.  .+|.+++|+.|+..++..+.+
T Consensus       175 rlL~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~~~~vlV~~pe~~si~ea~r  254 (354)
T 2woj_A          175 RFLQLPNTLSKLLEKFGEITNKLGPMLNSFMGAGNVDISGKLNELKANVETIRQQFTDPDLTTFVCVCISEFLSLYETER  254 (354)
T ss_dssp             HHHTHHHHHHHHHHCC---------------------CHHHHHHHHHHHHHHHHHHTCTTTEEEEEEEESSHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCcchHHHHHH
Confidence                 000              0                             01121  688999999999999999999


Q ss_pred             HHHHHHhcCCCceEEEEeccc-CCcc---cccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCCCHHHHH
Q 047623          209 VTGLLECDGIRDIKMVVNRVR-TDMI---KGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLA  284 (340)
Q Consensus       209 ~~~~l~~~~~~~~~vviN~~~-~~~~---~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~s~~~~~  284 (340)
                      +++.++..+.+..++|+|++. +...   ...........++.+ +..++.++.+..+     .+.|+...++  ....+
T Consensus       255 ~~~~L~~~g~~~~gvVvN~v~~~~~~~~~~~~~~~~~~~~q~~~-l~~l~~~~~~~~v-----~~~P~~~~~~--~g~~~  326 (354)
T 2woj_A          255 LIQELISYDMDVNSIIVNQLLFAENDQEHNCKRCQARWKMQKKY-LDQIDELYEDFHV-----VKMPLCAGEI--RGLNN  326 (354)
T ss_dssp             HHHHHHHTTCCEEEEEEEEECCCC------CHHHHHHHHHHHHH-HHHHHHHTTTSEE-----EEEECCSSCC--CHHHH
T ss_pred             HHHHHHHcCCCCCEEEEecCCCcccccccccHHHHHHHHHHHHH-HHHHHHhcCCCCE-----EEeecCCCCC--ccHHH
Confidence            999999999999999999998 5432   111111111111100 0011222222111     1334433333  45789


Q ss_pred             HHHHHHHHHhcc
Q 047623          285 FEQAAWRLVEQD  296 (340)
Q Consensus       285 ~~~la~~i~~~~  296 (340)
                      +.++++.+.+..
T Consensus       327 l~~la~~l~~~~  338 (354)
T 2woj_A          327 LTKFSQFLNKEY  338 (354)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHhcCC
Confidence            999999998764

>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*

Probab=99.87  E-value=4.3e-23  Score=191.43  Aligned_cols=232  Identities=20%  Similarity=0.219  Sum_probs=140.2

Q ss_pred             CCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCccc-H---HHhhcCCCccccc
Q 047623           46 AGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYT-V---VEVLNGDCRLDQA  121 (340)
Q Consensus        46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~-l---~~~l~~~~~~~~~  121 (340)
                      ..+.+++|+|+|+|||+||||+|+|||..+|++|+||++||+|++ ++++.+|+.+...... +   .++.....+....
T Consensus        21 ~~~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~-~~l~~~l~~~~~~~~~~v~g~~~l~~~~id~~~~   99 (349)
T 3ug7_A           21 EKKDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPA-HSLRDIFEQEFGHEPTKVKGYDNLYVVEIDPQKA   99 (349)
T ss_dssp             HSSCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTT-CHHHHHHCSCCCSSCEECTTCSSEEEEECCHHHH
T ss_pred             cccCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCC-CCHHHHhCCCCCcCccccccccceeeeccCHHHH
Confidence            456779999999999999999999999999999999999999997 8999999876431110 0   0111000010000


Q ss_pred             eeccc---ccCceeEeecCCCCCCC----CCCcch---hhHHHHHHHHHHhccCCCCEEEEcCCCCCCH------HH-H-
Q 047623          122 LVRDK---RWSNFELLCISKPRSKL----PLGFGG---KALTWVVEALKSRQEGSPDFILIDCPAGIDA------GF-I-  183 (340)
Q Consensus       122 ~~~~~---~~~~l~~l~~~~~~~~~----~~~~~~---~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~------~~-~-  183 (340)
                      +....   ......+++.+......    ......   ..+..+.+.+.   +.+||+|||||||....      .. . 
T Consensus       100 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~pg~~e~~~~~~l~~~~~---~~~yD~VIiDtpPt~~tlrlL~~p~~~~  176 (349)
T 3ug7_A          100 MEEYKEKLKAQIEENPFLGEMLEDQLEMAALSPGTDESAAFDVFLKYMD---SNEFDVVIFDTAPTGHTLRFLGMPEVMD  176 (349)
T ss_dssp             HHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHH---CCSCSEEEECSCCCTTGGGGGGHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccchhhHHHHHHhccCCCHHHHHHHHHHHHHHH---hCCCCEEEECCCCChHHHHHHhhHHHHH
Confidence            00000   00000011111000000    000000   11222232222   35799999999995421      00 0 


Q ss_pred             -----------------------------------------------------HHHhc--CCeEEEEeCCChhhHHHHHH
Q 047623          184 -----------------------------------------------------TAITP--ANEAVLVTTPDITSLRDADR  208 (340)
Q Consensus       184 -----------------------------------------------------~~l~~--ad~viiv~~~~~~s~~~~~~  208 (340)
                                                                           +.+..  .+.+++|+.|+..++..+.+
T Consensus       177 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~~~~vlV~~p~~~~~~e~~r  256 (349)
T 3ug7_A          177 KYMTKLIKLRKQMSGFMKMMKKLLPFGGKDEDIDYDKMLEELEKMKERIVRARNILSDPERTAFRLVVIPEEMSILESER  256 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSCC-------CHHHHHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCccHHHHHHH
Confidence                                                                 01111  47799999999999999999


Q ss_pred             HHHHHHhcCCCceEEEEecccCCccccc--------ccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCCCH
Q 047623          209 VTGLLECDGIRDIKMVVNRVRTDMIKGE--------DMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTL  280 (340)
Q Consensus       209 ~~~~l~~~~~~~~~vviN~~~~~~~~~~--------~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~s~  280 (340)
                      .++.++..+++..++|+|++........        .....+++.+.++...++.||.++.              .+  .
T Consensus       257 ~~~~l~~~~i~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~l~~iPl~~~--------------e~--~  320 (349)
T 3ug7_A          257 AMKALQKYGIPIDAVIVNQLIPEDVQCDFCRARRELQLKRLEMIKEKFGDKVIAYVPLLRT--------------EA--K  320 (349)
T ss_dssp             HHHHHHHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHSTTSEEEEEECCSS--------------CS--C
T ss_pred             HHHHHHHCCCCeeEEEEcCCccccCCCchHHHHHHHHHHHHHHHHHHcCCCcEEEecCCCC--------------CC--C
Confidence            9999999999999999999987531000        1123567778888888889988653              11  1


Q ss_pred             HHHHHHHHHHHHHhccc
Q 047623          281 AGLAFEQAAWRLVEQDS  297 (340)
Q Consensus       281 ~~~~~~~la~~i~~~~~  297 (340)
                      ...++.++++.+++...
T Consensus       321 g~~~L~~~~~~l~~~~~  337 (349)
T 3ug7_A          321 GIETLKQIAKILYGEEE  337 (349)
T ss_dssp             SHHHHHHHHHHHC----
T ss_pred             CHHHHHHHHHHHcCCCC
Confidence            34567777777776643

>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=99.86  E-value=1.5e-21  Score=179.48  Aligned_cols=229  Identities=19%  Similarity=0.175  Sum_probs=137.3

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCc-ccHHHhhcC-CCccccceecc
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVN-YTVVEVLNG-DCRLDQALVRD  125 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~-~~l~~~l~~-~~~~~~~~~~~  125 (340)
                      +.+++|+|+|+|||+||||+|+|||..+|++|+||++||+|++ ++++.+|+.+.... ..+.+.+.. ..+....+...
T Consensus        11 ~gm~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~-~~l~~~l~~~~~~~~~~v~~~l~~~~~d~~~~~~~~   89 (324)
T 3zq6_A           11 KGKTTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDPA-HSLSDSLEREIGHTPTKITENLYAVEIDPEVAMEEY   89 (324)
T ss_dssp             TTBCEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCSS-CCHHHHHTSCCCSSCEEEETTEEEEECCHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCCC-cCHHHHhCCcCCCCCccCCCCceeeccChHHHHHHH
Confidence            3458999999999999999999999999999999999999996 99999998763211 111111110 00111110000


Q ss_pred             c--ccCc-eeEeecCCCCCCC-----CCCcchh---hHHHHHHHHHHhccCCCCEEEEcCCCCCCH------HH------
Q 047623          126 K--RWSN-FELLCISKPRSKL-----PLGFGGK---ALTWVVEALKSRQEGSPDFILIDCPAGIDA------GF------  182 (340)
Q Consensus       126 ~--~~~~-l~~l~~~~~~~~~-----~~~~~~~---~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~------~~------  182 (340)
                      .  .... ..+++.+......     .......   .+..+.+.+.   ..+||+|||||||....      ..      
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pg~~e~~~~~~~~~~~~---~~~yD~VIiDtpPt~~~l~lL~~p~~~~~~~  166 (324)
T 3zq6_A           90 QAKLQEQAAMNPGMGLDMLQDQMDMASMSPGIDEAAAFDQFLRYMT---TDEYDIVIFDTAPTGHTLRLLSFPEIMDSWV  166 (324)
T ss_dssp             HHHC---------------------CTTSTTHHHHHHHHHHHHHHH---HCCCSEEEEECCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccchhhhHHHHHHhccCCChHHHHHHHHHHHHHH---hCCCCEEEECCCCCHHHHHHHHhHHHHHHHH
Confidence            0  0000 0122211110000     0001111   1223333333   34799999999993211      00      


Q ss_pred             -----------------------------------------------HHHHhc--CCeEEEEeCCChhhHHHHHHHHHHH
Q 047623          183 -----------------------------------------------ITAITP--ANEAVLVTTPDITSLRDADRVTGLL  213 (340)
Q Consensus       183 -----------------------------------------------~~~l~~--ad~viiv~~~~~~s~~~~~~~~~~l  213 (340)
                                                                     .+.+..  .+.+++|+.|+..++..+.+..+.+
T Consensus       167 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~~~~vlV~~p~~~~~~~~~~~~~~l  246 (324)
T 3zq6_A          167 GKMIKIRRQIGSMAKAFKNILPFMGDEEEEDRALQDMEATKKQINAAREVMSDPERTSFKMVVIPEEMSIYESERAMKAL  246 (324)
T ss_dssp             HHHHHHHHHHHHHHTTTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhccccCCcccchHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCcccHHHHHHHHHHHH
Confidence                                                           012222  3589999999999999999999999


Q ss_pred             HhcCCCceEEEEecccCCccccc--------ccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCCCHHHHHH
Q 047623          214 ECDGIRDIKMVVNRVRTDMIKGE--------DMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAF  285 (340)
Q Consensus       214 ~~~~~~~~~vviN~~~~~~~~~~--------~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~s~~~~~~  285 (340)
                      +..+++..++|+|++........        ....++++.+.++...++.||..+.-              +.  ...++
T Consensus       247 ~~~gi~v~gvV~N~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~iPl~~~e--------------~~--g~~~L  310 (324)
T 3zq6_A          247 EKYSIHADGVIVNQVLPEESDCEFCNARRKLQQERLKQIREKFSDKVVAEVPLLKKE--------------AK--GIETL  310 (324)
T ss_dssp             HHTTCCEEEEEEEEECCSCCCSHHHHHHHHHHHHHHHHHHHHTTTSEEEEEECCSSC--------------SC--SHHHH
T ss_pred             HHCCCCccEEEEcCCccccCCChHHHHHHHHHHHHHHHHHHHcCCCcEEEecCCCCC--------------CC--CHHHH
Confidence            99999999999999987521000        11235566777777777788865431              11  34566


Q ss_pred             HHHHHHHHhcc
Q 047623          286 EQAAWRLVEQD  296 (340)
Q Consensus       286 ~~la~~i~~~~  296 (340)
                      .++++.+.+..
T Consensus       311 ~~~~~~l~~~~  321 (324)
T 3zq6_A          311 EKIAEQLYGEP  321 (324)
T ss_dssp             HHHHHHHHCSC
T ss_pred             HHHHHHHhCCC
Confidence            77777776654

>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A

Probab=99.84  E-value=3.8e-20  Score=160.89  Aligned_cols=197  Identities=16%  Similarity=0.137  Sum_probs=119.8

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWS  129 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  129 (340)
                      +|+|+|+|+|||+||||+|+|||..|+++|+||+++|  ++..... .  ..........+.+.........   ... .
T Consensus         1 ~k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~d--p~~~~~~-~--~~~~~~~~d~~~~~~~~~~~~~---~~~-~   71 (224)
T 1byi_A            1 SKRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK--PVASGSE-K--TPEGLRNSDALALQRNSSLQLD---YAT-V   71 (224)
T ss_dssp             CEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC--SEEESCB-C--CTTSCBCHHHHHHHHTCSSCCC---HHH-H
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEc--ceecCCc-c--CCCCcChHHHHHHHHHhCCCCC---hhh-c
Confidence            3789999999999999999999999999999999975  4421111 0  0000000111111111111000   000 0


Q ss_pred             ceeEe--ecCCCCCC--CCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHH------HHHHHhc-CCeEEEEeCC
Q 047623          130 NFELL--CISKPRSK--LPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAG------FITAITP-ANEAVLVTTP  198 (340)
Q Consensus       130 ~l~~l--~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~------~~~~l~~-ad~viiv~~~  198 (340)
                      +...+  +..+....  .........+...++.+.+    +||||||||||++...      ....... .+.+++|+.+
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~----~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~  147 (224)
T 1byi_A           72 NPYTFAEPTSPHIISAQEGRPIESLVMSAGLRALEQ----QADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGV  147 (224)
T ss_dssp             CSEEESSCSCHHHHHHHHTCCCCHHHHHHHHHHHHT----TCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEEC
T ss_pred             ccEEeCCCCCHHHHHHHcCCCCCHHHHHHHHHHHHH----hCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecC
Confidence            11111  11100000  0001223344445555544    7999999999977531      1222222 3358899989


Q ss_pred             ChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChH
Q 047623          199 DITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSE  261 (340)
Q Consensus       199 ~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~  261 (340)
                      +..++..+...++.++..+.+..++|+|+++++...  .....+.+.+.++.++++.||+++.
T Consensus       148 ~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~~~~~~--~~~~~~~l~~~~~~~vl~~Ip~~~~  208 (224)
T 1byi_A          148 KLGCINHAMLTAQVIQHAGLTLAGWVANDVTPPGKR--HAEYMTTLTRMIPAPLLGEIPWLAE  208 (224)
T ss_dssp             STTHHHHHHHHHHHHHHTTCCEEEEEEECCSSCCTT--HHHHHHHHHHHSSSCEEEEECCCTT
T ss_pred             CCCcHHHHHHHHHHHHHCCCcEEEEEEeCCCCchhh--HHHHHHHHHHHcCCCEEEECCCCcC
Confidence            999999999999999877888899999999875322  1223567778899999999999874

>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}

Probab=99.81  E-value=6.1e-20  Score=168.94  Aligned_cols=179  Identities=20%  Similarity=0.193  Sum_probs=111.4

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCC--C--cccHHHhhcCCCcccccee
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENR--V--NYTVVEVLNGDCRLDQALV  123 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~--~--~~~l~~~l~~~~~~~~~~~  123 (340)
                      +..++|.|+|+|||+||||+|+|||..+|++|+||++||+|++ ++++.+|+.+..  +  ..++.++.....+.+..+.
T Consensus        16 ~~~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~-~~l~~~l~~~~~~~~~~~~g~~~l~~~~~~~~~~~~   94 (329)
T 2woo_A           16 QTSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA-HNLSDAFGTKFGKDARKVPGFDNLSAMEIDPNLSIQ   94 (329)
T ss_dssp             CTTCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT-CHHHHHHSSCCCSSCEECTTCSSEEEEECCHHHHHH
T ss_pred             CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC-cCHHHHhCCcCCCCCeeccCCCCeeEEecCHHHHHH
Confidence            3457889999999999999999999999999999999999999 999999987521  1  1122222222111111111


Q ss_pred             ccc-cc-Cc-ee-EeecCCCCCCCCCCcchh---hHHHHHHHHHHhccCCCCEEEEcCCCC-CC------HH--------
Q 047623          124 RDK-RW-SN-FE-LLCISKPRSKLPLGFGGK---ALTWVVEALKSRQEGSPDFILIDCPAG-ID------AG--------  181 (340)
Q Consensus       124 ~~~-~~-~~-l~-~l~~~~~~~~~~~~~~~~---~~~~l~~~l~~~~~~~~D~VIiD~~~~-~~------~~--------  181 (340)
                      ... .. .+ ++ +++...... ........   .+.++.+.+..   .+||||||||||. ..      ..        
T Consensus        95 ~~~~~~~~~~l~~~l~~~l~~l-~~~~pg~~e~~~~~~~~~~l~~---~~yD~ViiDtpPtg~~l~lL~~p~~~~~~l~~  170 (329)
T 2woo_A           95 EMTEQADQQNPNNPLSGMMQDL-AFTIPGIDEALAFAEILKQIKS---MEFDCVIFDTAPTGHTLRFLNFPTVLEKALGK  170 (329)
T ss_dssp             HHHHTC--------CCHHHHHH-HTTSTTHHHHHHHHHHHHHHHH---TCCSEEEEECCSSSCTTTGGGHHHHHHHHHHH
T ss_pred             HHHHHHhhhhHHHHhhHHHHHH-hcCCCCHHHHHHHHHHHHHHHh---CCCCEEEECCCCchHHHHHHHHHHHHHHHHHH
Confidence            100 00 00 11 111000000 00001111   23334444432   4899999999993 22      00        


Q ss_pred             ----------HHHH-------------------------------Hh--cCCeEEEEeCCChhhHHHHHHHHHHHHhcCC
Q 047623          182 ----------FITA-------------------------------IT--PANEAVLVTTPDITSLRDADRVTGLLECDGI  218 (340)
Q Consensus       182 ----------~~~~-------------------------------l~--~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~  218 (340)
                                ....                               +.  ..+.+++|+.|+..++..+.+.++.++..+.
T Consensus       171 l~~~~~~~~~~~~~l~~~~g~~~~~d~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlV~~pe~~~i~ea~~~~~~L~~~gi  250 (329)
T 2woo_A          171 LGGLSSRFGPMINQMGSIMGVNANEQDLFGKMESMRANISEVNKQFKNPDLTTFVCVCISEFLSLYETERMIQELTSYEI  250 (329)
T ss_dssp             HHTSCSSCHHHHHHHHHHHC-----CCTTHHHHHHHHHHHHHHHHHTCTTTEEEEEEEESSHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCCCcchHHHHHHHHHHHHHCCC
Confidence                      0011                               10  1247999999999999999999999999999


Q ss_pred             CceEEEEeccc-CC
Q 047623          219 RDIKMVVNRVR-TD  231 (340)
Q Consensus       219 ~~~~vviN~~~-~~  231 (340)
                      +..++|+|++. +.
T Consensus       251 ~v~gvVvN~~~~p~  264 (329)
T 2woo_A          251 DTHNIVVNQLLLDP  264 (329)
T ss_dssp             EEEEEEEEEECCCS
T ss_pred             CCCEEEEeCCcCcc
Confidence            99999999998 44

>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*

Probab=99.80  E-value=2.2e-18  Score=158.31  Aligned_cols=170  Identities=21%  Similarity=0.234  Sum_probs=103.7

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCccc-------HHHhhcC-CCccccc
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYT-------VVEVLNG-DCRLDQA  121 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~-------l~~~l~~-~~~~~~~  121 (340)
                      +++|.|+|+|||+||||+|+|||..+|+.|++|++||+|++ ++++.+|+.+......       +.....+ ...+.+.
T Consensus        15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D~~-~~l~~~l~~~~~~~~~~v~~~~~L~~~~id~~~~~~~~   93 (334)
T 3iqw_A           15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPA-HNLSDAFSQKFGKEARLVEGFDNLYAMEIDPNGSMQDL   93 (334)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECCSS-CHHHHHHTSCCCSSCEECTTCSSEEEEECCC-------
T ss_pred             CeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECCCC-CChhHHhccccCCCceeecCCCCceeeecCHHHHHHHH
Confidence            35666888999999999999999999999999999999998 8899888865321111       1000000 0000010


Q ss_pred             eecccc-----cCceeEeecCCCCCCC-CCCcchhh---HHHHHHHHHHhccCCCCEEEEcCCCCCCH------H-----
Q 047623          122 LVRDKR-----WSNFELLCISKPRSKL-PLGFGGKA---LTWVVEALKSRQEGSPDFILIDCPAGIDA------G-----  181 (340)
Q Consensus       122 ~~~~~~-----~~~l~~l~~~~~~~~~-~~~~~~~~---~~~l~~~l~~~~~~~~D~VIiD~~~~~~~------~-----  181 (340)
                      ......     ..++.++      ... ....+.++   +..+.+.+.   +.+||+|||||||....      .     
T Consensus        94 ~~~~~~~~~~~~~~l~~~------~~~~~~~Pg~~e~~~~~~~~~~~~---~~~yD~VIiDtpPtg~tLrlL~lp~~l~~  164 (334)
T 3iqw_A           94 LAGQTGDGDAGMGGVGVM------QDLAYAIPGIDEAMSFAEVLKQVN---SLSYETIVFDTAPTGHTLRFLQFPTVLEK  164 (334)
T ss_dssp             -------------------------------CCHHHHHHHHHHHHHHH---TSSCSEEEEECCCHHHHHHHHTHHHHC--
T ss_pred             HHHhhcccccccccchhh------HHhhcCCCCHHHHHHHHHHHHHHH---hCCCCEEEEeCCCCHHHHHHHHHHHHHHH
Confidence            000000     0011110      000 00011122   222333332   35899999999992100      0     


Q ss_pred             ------------------------------------------------HHHHHhc--CCeEEEEeCCChhhHHHHHHHHH
Q 047623          182 ------------------------------------------------FITAITP--ANEAVLVTTPDITSLRDADRVTG  211 (340)
Q Consensus       182 ------------------------------------------------~~~~l~~--ad~viiv~~~~~~s~~~~~~~~~  211 (340)
                                                                      ..+.+..  .+.+++|+.|+..++..+.+..+
T Consensus       165 ~l~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~~~~ea~r~~~  244 (334)
T 3iqw_A          165 ALAKVSQLSGQYGSLLNGILGGSGTLPNGQTLSDVMEKLDSLRVTISEVNAQFKDERLTTFVCVCIPEFLSLYETERMIQ  244 (334)
T ss_dssp             ---------------------------------CCHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHHHHHhhCCCCeeEEEEECCCccHHHHHHHHHH
Confidence                                                            0111222  35799999999999999999999


Q ss_pred             HHHhcCCCceEEEEeccc
Q 047623          212 LLECDGIRDIKMVVNRVR  229 (340)
Q Consensus       212 ~l~~~~~~~~~vviN~~~  229 (340)
                      .++..+++..++|+|++.
T Consensus       245 ~L~~~gi~v~gvVvN~~~  262 (334)
T 3iqw_A          245 ELANYGIDTHCIVVNQLL  262 (334)
T ss_dssp             HHHHTTCCEEEEEEEEEC
T ss_pred             HHHHCCCCccEEEECCCc
Confidence            999999999999999987

>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}

Probab=99.79  E-value=8.1e-19  Score=161.99  Aligned_cols=180  Identities=18%  Similarity=0.142  Sum_probs=98.4

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHH--HCCCcEEEEecCCCCCCchhccCCcCCCcc-------cHHHhhcCC-Ccccc
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLA--RLGFSVVAIDADVGLRNLDLLLGLENRVNY-------TVVEVLNGD-CRLDQ  120 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la--~~g~~VlliD~D~~~~~l~~~~~~~~~~~~-------~l~~~l~~~-~~~~~  120 (340)
                      +.|.|+++|||+||||+|+|||..+|  +.|++|++||+|++ ++++.+|+.+.....       ++.....+. ..+.+
T Consensus        18 ~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~-~~l~~~~~~~~~~~~~~v~~~~~L~~~~id~~~~~~~   96 (348)
T 3io3_A           18 LKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPA-HNLSDAFCQKFGKDARKVEGLPNLSCMEIDPEAAMSD   96 (348)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS-CHHHHHHTSCCCSSCEEETTEEEEEEEECCC------
T ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC-CChHHHhccccCCCceeccCCCCceEEeeCHHHHHHH
Confidence            35556667999999999999999999  88999999999987 899999986522111       110000000 00000


Q ss_pred             ceeccc-----ccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHh---------ccCCCCEEEEcCCCCCCHH-----
Q 047623          121 ALVRDK-----RWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSR---------QEGSPDFILIDCPAGIDAG-----  181 (340)
Q Consensus       121 ~~~~~~-----~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~---------~~~~~D~VIiD~~~~~~~~-----  181 (340)
                      ......     ...++..+...... ..+.......+..+++.+.+.         ...+||+|||||||.....     
T Consensus        97 ~~~~~~~~~~~~~~~l~~~~~~~~~-~~Pg~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~yD~VIiDtpPtg~tLrlL~l  175 (348)
T 3io3_A           97 LQQQASQYNNDPNDPLKSMMSDMTG-SIPGIDEALSFMEVLKHIKNQKVLEGEDNSNAISYKTIIFDTAPTGHTLRFLQL  175 (348)
T ss_dssp             ------------------------------------------------------------CCEEEEECSSHHHHHHHTC-
T ss_pred             HHHHHHhhcccccccHhHHhHHhhc-CCCCHHHHHHHHHHHHHHHhccccccccccccCCCCEEEEcCCCchHHHHHHhh
Confidence            000000     00001111000000 000000001223333333321         1126999999999921100     


Q ss_pred             ----------------------------------------------HHHHHh--cCCeEEEEeCCChhhHHHHHHHHHHH
Q 047623          182 ----------------------------------------------FITAIT--PANEAVLVTTPDITSLRDADRVTGLL  213 (340)
Q Consensus       182 ----------------------------------------------~~~~l~--~ad~viiv~~~~~~s~~~~~~~~~~l  213 (340)
                                                                    ....+.  ..+.+++|+.|+..++..+.+.++.+
T Consensus       176 P~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~~~~ea~r~~~~L  255 (348)
T 3io3_A          176 PSTLEKLLSKFKDLSGKLGPMLSMMGGGQQQDIFEKLNEVQKNVSEVNEQFTNPELTTFICVCISEFLSLYETERMIQEL  255 (348)
T ss_dssp             --------------------------------------------CHHHHHHTCTTTEEEEEEEESSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHhcccCchHHHHHHHHHHHHHHHHHHHHHhCcCceEEEEEecCCccHHHHHHHHHHHH
Confidence                                                          011121  13579999999999999999999999


Q ss_pred             HhcCCCceEEEEecccCCc
Q 047623          214 ECDGIRDIKMVVNRVRTDM  232 (340)
Q Consensus       214 ~~~~~~~~~vviN~~~~~~  232 (340)
                      +..+++..++|+|++....
T Consensus       256 ~~~gi~v~gvVvN~~~~~~  274 (348)
T 3io3_A          256 MSYNMDVNSIVVNQLLFAE  274 (348)
T ss_dssp             HHTTCCCCEEEEEEECCCC
T ss_pred             HHCCCCccEEEEcCCcccc
Confidence            9999999999999998753

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*

Probab=99.74  E-value=1.9e-18  Score=171.11  Aligned_cols=207  Identities=21%  Similarity=0.265  Sum_probs=118.0

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHH--HhhcCCCccccceecc
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVV--EVLNGDCRLDQALVRD  125 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~--~~l~~~~~~~~~~~~~  125 (340)
                      .+.++|.|+++|||+||||+|+|||..++++|++|+++|+|++ ++++.+|+.... +....  +...........+...
T Consensus       324 ~~~~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp~-~~l~~~l~~~~~-~l~~~~~~~~~~~~~~~~~v~~~  401 (589)
T 1ihu_A          324 RNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA-AHLSMTLNGSLN-NLQVSRIDPHEETERYRQHVLET  401 (589)
T ss_dssp             TTSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC------------C-CEEEEECCHHHHHHHHHHHHHHH
T ss_pred             ccCCeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCCCc-ccHhHHhcccCC-CceeeecchHHHHHHHHHHHHHh
Confidence            4567899999999999999999999999999999999999999 888888876321 11100  0000000000011000


Q ss_pred             cccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhc-cCCCCEEEEcCCCCCCHH----------------------H
Q 047623          126 KRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQ-EGSPDFILIDCPAGIDAG----------------------F  182 (340)
Q Consensus       126 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~D~VIiD~~~~~~~~----------------------~  182 (340)
                      . ..++...  ..................+++.+.+.+ ..+||+|||||||+....                      .
T Consensus       402 ~-~~~l~~~--~~~~~~~~~~~p~~~e~~~~~~l~~~~~~~~~D~vviD~~p~~~tl~ll~~p~~~~~~~~~~~~~~~~~  478 (589)
T 1ihu_A          402 K-GKELDEA--GKRLLEEDLRSPCTEEIAVFQAFSRVIREAGKRFVVMDTAPTGHTLLLLDATGAYHREIAKKMGEKGHF  478 (589)
T ss_dssp             H-HTTCCHH--HHHHHHHHTTSHHHHHHHHHHHHTTTGGGGGTSEEEESCCCCHHHHHHHHHC-----------------
T ss_pred             h-hccCChh--hHHHHHHHhcCCChHHHHHHHHHHHHHhccCCCEEEEcCCCCccHHHHHHhHHHHHHHHHHhcccchHH
Confidence            0 0111100  000000000000011122444444433 246999999999973211                      0


Q ss_pred             ---HHHHh--cCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCccccc---------ccccHHHHHHHh
Q 047623          183 ---ITAIT--PANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGE---------DMMSVLDIQEML  248 (340)
Q Consensus       183 ---~~~l~--~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~---------~~~~~~~i~~~~  248 (340)
                         ...+.  .+|.+++|+.++..++..+.++++.++..+.+..++|+|++.+......         ....++++.+.+
T Consensus       479 ~~~~~~l~d~~~~~vvlV~~p~~~~~~~a~~~~~~l~~~g~~~~gvVvN~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~  558 (589)
T 1ihu_A          479 TTPMMLLQDPERTKVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSLSIADTRSPLLRMRAQQELPQIESVKRQH  558 (589)
T ss_dssp             -CCHHHHHCTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTCCCCEEEEEEESTTSCCCCHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHhcCCCCCEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCCCCCcCHHHHHHHHHHHHHHHHHHHhc
Confidence               11222  5689999999999999999999999999999999999999987531111         112344566667


Q ss_pred             CCceeEEecCCh
Q 047623          249 GLALLGVIPEDS  260 (340)
Q Consensus       249 g~~v~~~Ip~d~  260 (340)
                      +.++ +.||+.+
T Consensus       559 ~~~v-~~iP~~~  569 (589)
T 1ihu_A          559 ASRV-ALVPVLA  569 (589)
T ss_dssp             CSSE-EEEECCS
T ss_pred             CCcE-EEccCCC
Confidence            7666 6777644

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*

Probab=99.72  E-value=1.8e-17  Score=164.14  Aligned_cols=177  Identities=19%  Similarity=0.146  Sum_probs=107.3

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCccc----HHHhhcCCCccccceecc-
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYT----VVEVLNGDCRLDQALVRD-  125 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~----l~~~l~~~~~~~~~~~~~-  125 (340)
                      +.|.|+++|||+||||+|+|||..+|++|+||++||+|++ ++++..|+.+......    +.++.....+........ 
T Consensus         8 ~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~~-~~l~~~l~~~~~~~~~~v~~~~~l~~~~~d~~~~~~~~~   86 (589)
T 1ihu_A            8 PPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPA-SNVGQVFSQTIGNTIQAIASVPGLSALEIDPQAAAQQYR   86 (589)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT-CCHHHHTTSCCCSSCEECTTSTTEEEEECCHHHHHHHHH
T ss_pred             CEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCCC-cCHHHHhCCcccCCCceeccchhhhhccCCHHHHHHHHH
Confidence            3455778999999999999999999999999999999997 9999999886432110    011111110110000000 


Q ss_pred             --cccCceeEeecCCC------CCC--CCCCcchhhHHHHHH--HHHHhccCCCCEEEEcCCCCCCHH------------
Q 047623          126 --KRWSNFELLCISKP------RSK--LPLGFGGKALTWVVE--ALKSRQEGSPDFILIDCPAGIDAG------------  181 (340)
Q Consensus       126 --~~~~~l~~l~~~~~------~~~--~~~~~~~~~~~~l~~--~l~~~~~~~~D~VIiD~~~~~~~~------------  181 (340)
                        -..+...++|....      ...  .......+.+..+++  .+.    .+||+|||||||.....            
T Consensus        87 ~~~~~~~~~~lp~~~~~~~~~~l~~~~~~e~~~~~~~~~ll~~~~l~----~~yD~VIiDt~P~~~~lrll~lP~~~~~~  162 (589)
T 1ihu_A           87 ARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLLTDASLL----TRFDHIIFDTAPTGHTIRLLQLPGAWSSF  162 (589)
T ss_dssp             HHHHGGGTTTSCHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHCTTHH----HHCSEEEESSCCCHHHHHHHHCGGGGTCC
T ss_pred             HHHHHHHHHhcchhhHHHHHHHhcccchHHHHHHHHHHHHHhchhhc----ccCCEEEECCCCchhHHHHHHhHHHHHHH
Confidence              00011111111000      000  000001112233333  222    36999999999853210            


Q ss_pred             --------------------------HHHHHhc--CCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCc
Q 047623          182 --------------------------FITAITP--ANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDM  232 (340)
Q Consensus       182 --------------------------~~~~l~~--ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~  232 (340)
                                                ....+..  .+.+++|+.++..++..+.+.++.++..+.+..++|+|++.+..
T Consensus       163 l~~~~~~~~~l~~~~~l~~~~~~~~~~~~~l~d~~~t~vvlV~~~~~~~~~~~~~~~~~L~~~g~~~~gvVlN~v~~~~  241 (589)
T 1ihu_A          163 IDSNPEGASCLGPMAGLEKQREQYAYAVEALSDPKRTRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLPKT  241 (589)
T ss_dssp             C------CCCCGGGGGCCSCHHHHHHHHHHHHCTTTEEEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEECCGG
T ss_pred             HHHhhccccccchhhhhhHHHHHHHHHHHHhcCCCCcEEEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEEcCCcCcc
Confidence                                      0111111  23699999999999999999999999999999999999998764

>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}

Probab=99.67  E-value=1.2e-16  Score=148.51  Aligned_cols=49  Identities=27%  Similarity=0.283  Sum_probs=44.6

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCc
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLE  101 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~  101 (340)
                      ..|.++++|||+||||+|+|||..+|+.|++|++||+ ++ ++++.+|+.+
T Consensus         2 ~~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd~-~~-~~l~~~~~~~   50 (374)
T 3igf_A            2 ALILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAGL-AE-PVLPLLLEQT   50 (374)
T ss_dssp             CEEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEEC-SC-SHHHHHHTSC
T ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEeC-CC-CChHHhhCCC
Confidence            3566778999999999999999999999999999999 87 9999999876

>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}

Probab=99.61  E-value=1.7e-15  Score=131.90  Aligned_cols=197  Identities=11%  Similarity=0.062  Sum_probs=118.4

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccc
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKR  127 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  127 (340)
                      ..|+.|.|+|+..|+|||+++++|+..|+++|++|..+.  |.......   ..+  +..-.|.+......... ..  .
T Consensus         2 ~~mk~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~K--Pv~~g~~~---~~~--~~~~~D~~~~~~~~~~~-~~--~   71 (228)
T 3of5_A            2 NAMKKFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCLK--PVASGQSQ---FSE--LCEDVESILNAYKHKFT-AA--E   71 (228)
T ss_dssp             TTCEEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEC--SEEESBCS---SSS--SBHHHHHHHHHTTTSSC-HH--H
T ss_pred             CCCcEEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEec--ceeecCcc---CCC--CCChHHHHHHhcCCCCC-hh--h
Confidence            356899999999999999999999999999999999965  21000000   000  00001221100010000 00  0


Q ss_pred             cCceeEeecCCCCCCCC-CCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCH------HHHHHHh-cCCeEEEEeCCC
Q 047623          128 WSNFELLCISKPRSKLP-LGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDA------GFITAIT-PANEAVLVTTPD  199 (340)
Q Consensus       128 ~~~l~~l~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~------~~~~~l~-~ad~viiv~~~~  199 (340)
                       -+...+.......... ..-..-....+.+.+.+.+.++||+||||+++++..      ....... ...-+|+|+.++
T Consensus        72 -~~~~~~~~p~sp~~aa~~~~~~i~~~~i~~~~~~~l~~~~D~vlIEgaggl~~p~~~~~~~adla~~l~~pviLV~~~~  150 (228)
T 3of5_A           72 -INLISFNQAVAPHIIAAKTKVDISIENLKQFIEDKYNQDLDILFIEGAGGLLTPYSDHTTQLDLIKALQIPVLLVSAIK  150 (228)
T ss_dssp             -HCSEEESSSSCHHHHHHHTTCCCCHHHHHHHHHGGGGSSCSEEEEEEEEETTCBSSSSCBHHHHHHHHTCCEEEEEECS
T ss_pred             -EEEEEECCCCCHHHHHHHcCCCCCHHHHHHHHHHHHHccCCEEEEECCCccccccccchhHHHHHHHcCCCEEEEEcCC
Confidence             1112221110000000 000011234455554442345899999999986532      1222222 244589999999


Q ss_pred             hhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEec
Q 047623          200 ITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIP  257 (340)
Q Consensus       200 ~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip  257 (340)
                      ..++..+...++.++..+.+..++|+|+++++...  .....+.+++.+|.+++++||
T Consensus       151 ~~~i~~~~~~~~~l~~~~~~i~GvIlN~~~~~~~~--~~~~~~~l~~~~g~pvLG~iP  206 (228)
T 3of5_A          151 VGCINHTLLTINELNRHNIKLAGWIANCNDSNIKY--IDEQINTIEELSGYKCSAKIS  206 (228)
T ss_dssp             TTHHHHHHHHHHHHHHTTCCEEEEEEEECCTTCSC--HHHHHHHHHHHHSCCCSEEEE
T ss_pred             cchHHHHHHHHHHHHhCCCcEEEEEEECcCCcchh--hHHHHHHHHHhhCCCEEEECC
Confidence            99999999999999888999999999999876321  123467788889999999999

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=99.60  E-value=1.9e-14  Score=136.50  Aligned_cols=164  Identities=18%  Similarity=0.195  Sum_probs=105.3

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccc
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARL-GFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDK  126 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~-g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  126 (340)
                      ..+++|+|+ ++||+||||++.+||.+++++ |++|+++|+|++.+.....+.                        ...
T Consensus        98 ~~~~vI~iv-G~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~------------------------~~~  152 (433)
T 2xxa_A           98 QPPAVVLMA-GLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLE------------------------TLA  152 (433)
T ss_dssp             SSSEEEEEE-CSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHH------------------------HHH
T ss_pred             CCCeEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHH------------------------hhc
Confidence            457899998 589999999999999999999 999999999998554322110                        001


Q ss_pred             ccCceeEeecCCCCCCCCCCcchhhH-HHHHHHHHHhccCCCCEEEEcCCCCCC--HHHHHH------HhcCCeEEEEeC
Q 047623          127 RWSNFELLCISKPRSKLPLGFGGKAL-TWVVEALKSRQEGSPDFILIDCPAGID--AGFITA------ITPANEAVLVTT  197 (340)
Q Consensus       127 ~~~~l~~l~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~D~VIiD~~~~~~--~~~~~~------l~~ad~viiv~~  197 (340)
                      ...++++++++..       .++..+ ...++.+..   .+||+|||||||...  ......      +..+|.+++|+.
T Consensus       153 ~~~~l~v~~~~~~-------~dp~~i~~~~l~~~~~---~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvd  222 (433)
T 2xxa_A          153 EQVGVDFFPSDVG-------QKPVDIVNAALKEAKL---KFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVD  222 (433)
T ss_dssp             HHHTCEECCCCSS-------SCHHHHHHHHHHHHHH---TTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEE
T ss_pred             ccCCeeEEeCCCC-------CCHHHHHHHHHHHHHh---CCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEee
Confidence            1256777765542       122222 334444442   379999999998653  233322      336788888887


Q ss_pred             CChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623          198 PDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL  253 (340)
Q Consensus       198 ~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~  253 (340)
                      +...  ..+....+.+.. ..+..++|+|+++.....    .....+.+.++.++.
T Consensus       223 a~~g--~~~~~~~~~f~~-~l~i~gvVlnK~D~~~~~----g~~l~i~~~~~~Pi~  271 (433)
T 2xxa_A          223 AMTG--QDAANTAKAFNE-ALPLTGVVLTKVDGDARG----GAALSIRHITGKPIK  271 (433)
T ss_dssp             TTBC--TTHHHHHHHHHH-HSCCCCEEEECTTSSSCC----THHHHHHHHHCCCEE
T ss_pred             cchh--HHHHHHHHHHhc-cCCCeEEEEecCCCCccH----HHHHHHHHHHCCCeE
Confidence            6532  223333333432 345678999999886532    234467777887744

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=99.54  E-value=4.1e-13  Score=122.53  Aligned_cols=170  Identities=18%  Similarity=0.233  Sum_probs=106.0

Q ss_pred             CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccc
Q 047623           47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDK  126 (340)
Q Consensus        47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  126 (340)
                      .+.+++|+|+|. +|+||||++.+||..++..|.+|+++|+|.+.+.....          +..+..  .         .
T Consensus       102 ~~~~~vI~ivG~-~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~q----------l~~~~~--~---------~  159 (320)
T 1zu4_A          102 ENRLNIFMLVGV-NGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQ----------LEEWIK--T---------R  159 (320)
T ss_dssp             TTSCEEEEEESS-TTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHH----------HHHHHT--T---------T
T ss_pred             CCCCeEEEEECC-CCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHH----------HHHHHh--c---------c
Confidence            466899999987 99999999999999999999999999999873322110          011100  0         0


Q ss_pred             ccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHH--HHHH-------H-----hcCCeE
Q 047623          127 RWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAG--FITA-------I-----TPANEA  192 (340)
Q Consensus       127 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~--~~~~-------l-----~~ad~v  192 (340)
                      ...++.++|.....      ..+.  ..+.+.+...+.++||+|||||||.....  ..+.       +     ..+|.+
T Consensus       160 ~~~~l~vip~~~~~------~~p~--~~~~~~l~~~~~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~v  231 (320)
T 1zu4_A          160 LNNKVDLVKANKLN------ADPA--SVVFDAIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEV  231 (320)
T ss_dssp             SCTTEEEECCSSTT------CCHH--HHHHHHHHHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEE
T ss_pred             ccCCceEEeCCCCC------CCHH--HHHHHHHHHHHhcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceE
Confidence            12677777544321      1111  11233333323448999999999976431  2111       1     137888


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623          193 VLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL  253 (340)
Q Consensus       193 iiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~  253 (340)
                      ++|+.... ..+.+.+.. .+.. .....++|+|+++.....    -....+...++.|+.
T Consensus       232 llVl~a~~-~~~~l~~~~-~~~~-~~~i~GvVltk~d~~~~~----g~~~~~~~~~~~Pi~  285 (320)
T 1zu4_A          232 LLVIDATT-GQNGVIQAE-EFSK-VADVSGIILTKMDSTSKG----GIGLAIKELLNIPIK  285 (320)
T ss_dssp             EEEEEGGG-THHHHHHHH-HHTT-TSCCCEEEEECGGGCSCT----THHHHHHHHHCCCEE
T ss_pred             EEEEECCC-cHHHHHHHH-HHhh-cCCCcEEEEeCCCCCCch----hHHHHHHHHHCcCEE
Confidence            88887763 233333332 2222 356789999999876532    235577778898875

>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*

Probab=99.53  E-value=4.1e-13  Score=118.09  Aligned_cols=194  Identities=13%  Similarity=0.129  Sum_probs=117.9

Q ss_pred             CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccc
Q 047623           47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDK  126 (340)
Q Consensus        47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  126 (340)
                      .+.++.|.|+++..|+|||++++.|+.+|+++|++|..+.-=.+ +...     ...   + ...+.........     
T Consensus        23 ~~~m~~i~Itgt~t~vGKT~vt~gL~~~l~~~G~~V~~fKPv~~-g~~~-----~~~---D-~~~~~~~~g~~~~-----   87 (251)
T 3fgn_A           23 QSHMTILVVTGTGTGVGKTVVCAALASAARQAGIDVAVCKPVQT-GTAR-----GDD---D-LAEVGRLAGVTQL-----   87 (251)
T ss_dssp             CSSCEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEEEEEC-CGGG-----TCC---H-HHHHHHHHCCCEE-----
T ss_pred             ccCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEeeeec-CCCC-----CCH---H-HHHHHHHcCCCCC-----
Confidence            46679999999999999999999999999999999999762111 1000     000   0 0111100000000     


Q ss_pred             ccCceeEeecCCC--CCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCH-------HHHHHH-hcCCeEEEEe
Q 047623          127 RWSNFELLCISKP--RSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDA-------GFITAI-TPANEAVLVT  196 (340)
Q Consensus       127 ~~~~l~~l~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~-------~~~~~l-~~ad~viiv~  196 (340)
                        .+...+.....  ...............+.+.+.+ +..+||+||||+++++..       ...... ....-||+|+
T Consensus        88 --~~~~~~~~p~sP~~aa~~~~~~~~~~~~i~~~~~~-l~~~~D~vlIEGagGl~~pl~~~~~~~adla~~l~~pVILV~  164 (251)
T 3fgn_A           88 --AGLARYPQPMAPAAAAEHAGMALPARDQIVRLIAD-LDRPGRLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVV  164 (251)
T ss_dssp             --EEEEECSSSSCHHHHHHHTTCCCCCHHHHHHHHHT-TCCTTCEEEEECSSSTTCEEETTTEEHHHHHHHTTCEEEEEE
T ss_pred             --CCCeeECCCCChHHHHHHcCCCCCCHHHHHHHHHH-HHhcCCEEEEECCCCCcCCcCcccchHHHHHHHcCCCEEEEE
Confidence              11111110000  0000000001123445555544 456899999999987631       222333 2356799999


Q ss_pred             CCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChH
Q 047623          197 TPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSE  261 (340)
Q Consensus       197 ~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~  261 (340)
                      ..+..++..+...++.++..+.+..++|+|++..+.... .....+.+++.  .+++++||++..
T Consensus       165 ~~~~g~i~~~~lt~~~l~~~g~~i~GvIlN~v~~~~~~~-~~~~~~~le~~--vpvLG~iP~~~~  226 (251)
T 3fgn_A          165 TADLGTLNHTKLTLEALAAQQVSCAGLVIGSWPDPPGLV-AASNRSALARI--AMVRAALPAGAA  226 (251)
T ss_dssp             CSSTTHHHHHHHHHHHHHHTTCCEEEEEEEEECSSCCHH-HHHHHHHHHHH--SCEEEEEETTGG
T ss_pred             cCCCccHHHHHHHHHHHHhCCCCEEEEEEECCCCchhhh-hhhHHHHHHHh--CCEEEEeeCCCC
Confidence            999999999999999998889999999999996432111 11234455554  999999999864

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=99.52  E-value=2.7e-13  Score=122.48  Aligned_cols=163  Identities=17%  Similarity=0.148  Sum_probs=104.4

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWS  129 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  129 (340)
                      +++|+++ +++|+||||++.+||..++..|.+|+++|+|++.+.....+.          .+            .  ...
T Consensus        98 ~~vi~i~-G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~----------~~------------~--~~~  152 (297)
T 1j8m_F           98 PYVIMLV-GVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQ----------QL------------G--QQI  152 (297)
T ss_dssp             SEEEEEE-CSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHH----------HH------------H--HHH
T ss_pred             CeEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHH----------HH------------h--ccC
Confidence            7788887 689999999999999999999999999999998544332210          00            0  013


Q ss_pred             ceeEeecCCCCCCCCCCcchhh-HHHHHHHHHHhccCCCCEEEEcCCCCCC--H---HHH-----HHHhcCCeEEEEeCC
Q 047623          130 NFELLCISKPRSKLPLGFGGKA-LTWVVEALKSRQEGSPDFILIDCPAGID--A---GFI-----TAITPANEAVLVTTP  198 (340)
Q Consensus       130 ~l~~l~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~D~VIiD~~~~~~--~---~~~-----~~l~~ad~viiv~~~  198 (340)
                      ++.++++...       .++.. ....++.++.   .+||+|||||||...  .   ...     .....+|.+++|+.+
T Consensus       153 ~v~v~~~~~~-------~~p~~~~~~~l~~~~~---~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda  222 (297)
T 1j8m_F          153 GVPVYGEPGE-------KDVVGIAKRGVEKFLS---EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDA  222 (297)
T ss_dssp             TCCEECCTTC-------CCHHHHHHHHHHHHHH---TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEG
T ss_pred             CeEEEecCCC-------CCHHHHHHHHHHHHHh---CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeC
Confidence            4555553211       11222 2334444431   479999999999765  2   221     234578999999887


Q ss_pred             ChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeE
Q 047623          199 DITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLG  254 (340)
Q Consensus       199 ~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~  254 (340)
                      ...  ..+....+.+.. ..+..++|+|+++.....    .....+...++.++..
T Consensus       223 ~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~~~~~----g~~~~~~~~~~~pi~~  271 (297)
T 1j8m_F          223 SIG--QKAYDLASKFNQ-ASKIGTIIITKMDGTAKG----GGALSAVAATGATIKF  271 (297)
T ss_dssp             GGG--GGHHHHHHHHHH-TCTTEEEEEECGGGCTTH----HHHHHHHHTTTCCEEE
T ss_pred             Cch--HHHHHHHHHHHh-hCCCCEEEEeCCCCCcch----HHHHHHHHHHCcCEEE
Confidence            532  233333444443 456689999999876421    2244567778877753

>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A

Probab=99.48  E-value=1.4e-13  Score=120.51  Aligned_cols=214  Identities=10%  Similarity=0.046  Sum_probs=119.0

Q ss_pred             CCCCCCCCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhh---cCCC
Q 047623           40 NRKPELAGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVL---NGDC  116 (340)
Q Consensus        40 ~~~~~~~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l---~~~~  116 (340)
                      +...+..++|++.|.|+|+.+|+|||++++.|+..|+++|++|..+.  |........-+ ..   .+...++   ....
T Consensus        11 ~~~~~~~~~m~k~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fK--Pv~~g~~~~~~-~~---~D~~~~~~~~~~~~   84 (242)
T 3qxc_A           11 SSGRENLYFQGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLK--PIETGVNDAIN-HS---SDAHLFLQDNRLLD   84 (242)
T ss_dssp             --------CCCEEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEC--CEECSCCTTTC-CC---SHHHHHHHHHHTTC
T ss_pred             cchhhHHhhcCcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEe--eeecCCcccCC-CC---chHHHHHHHHHHHh
Confidence            34445667889999999999999999999999999999999999985  21011100000 01   1111110   1100


Q ss_pred             -ccccceecccccCceeEe--ecCCCCCCCCCCcc-hhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHH------HHHHH
Q 047623          117 -RLDQALVRDKRWSNFELL--CISKPRSKLPLGFG-GKALTWVVEALKSRQEGSPDFILIDCPAGIDAG------FITAI  186 (340)
Q Consensus       117 -~~~~~~~~~~~~~~l~~l--~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~------~~~~l  186 (340)
                       ....   .  . -+...+  |..+.......... ......+.+.+.+ +..+||+||||+++++...      ...+.
T Consensus        85 ~g~~~---~--~-~~p~~~~~p~sp~~aa~~~g~~~~i~~~~I~~~~~~-l~~~~D~vlIEGagGl~~pl~~~~~~adlA  157 (242)
T 3qxc_A           85 RSLTL---K--D-ISFYRYHKVSAPLIAQQEEDPNAPIDTDNLTQRLHN-FTKTYDLVIVEGAGGLCVPITLEENMLDFA  157 (242)
T ss_dssp             TTCCH---H--H-HCCEECSSSSCHHHHHHHHCTTCCCCHHHHHHHHHH-GGGTCSEEEEECCSCTTCBSSSSCBHHHHH
T ss_pred             CCCCh---H--H-eeeEEECCCCChHHHHHHcCCCCcCCHHHHHHHHHH-HHhcCCEEEEECCCCccccccccchHHHHH
Confidence             0100   0  0 011111  11100000000000 1123344444443 3448999999999876421      12222


Q ss_pred             h-cCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHH---hCCceeEEecCChHH
Q 047623          187 T-PANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEM---LGLALLGVIPEDSEV  262 (340)
Q Consensus       187 ~-~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~---~g~~v~~~Ip~d~~~  262 (340)
                      . ...-||+|+..+..++..+...++.++..+.+ .++|+|++.++....+  .....+++.   ...+++.+++.-+.+
T Consensus       158 ~~l~~pVILV~~~~lg~i~~~~lt~~~l~~~g~~-~GvIlN~v~~~~~~~~--~~~p~le~~~~~~~~~~~~~~~~~~~l  234 (242)
T 3qxc_A          158 LKLKAKMLLISHDNLGLINDCLLNDFLLKSHQLD-YKIAINLKGNNTAFHS--ISLPYIELFNTRSNNPIVIFQQSLKVL  234 (242)
T ss_dssp             HHHTCEEEEEECCSTTHHHHHHHHHHHHHTSSSC-EEEEECCCTTCCHHHH--HTHHHHHHHHHHCSSCCEEGGGCHHHH
T ss_pred             HHcCCCEEEEEcCCCcHHHHHHHHHHHHHhCCCC-EEEEEeCCCCccchhh--hhHHHHHHhcCcccCCceeccccHHHH
Confidence            2 24559999999999999999999999988999 9999999987642111  112233333   245666677766666


Q ss_pred             HHHHhcC
Q 047623          263 IRSTNRG  269 (340)
Q Consensus       263 ~~a~~~g  269 (340)
                      .+.+..|
T Consensus       235 ~~~~~~~  241 (242)
T 3qxc_A          235 MSFALKG  241 (242)
T ss_dssp             HHHHHSC
T ss_pred             HHHHhcC
Confidence            6665544

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=99.46  E-value=1.3e-12  Score=117.94  Aligned_cols=163  Identities=18%  Similarity=0.222  Sum_probs=103.3

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccccc
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRW  128 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  128 (340)
                      .+++|+++ +++|+||||++.+||..++..|.+|+++|+|++.+.....+.          .+            .  ..
T Consensus        97 ~~~~i~i~-g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~----------~~------------~--~~  151 (295)
T 1ls1_A           97 DRNLWFLV-GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLR----------LL------------G--EK  151 (295)
T ss_dssp             SSEEEEEE-CCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHH----------HH------------H--HH
T ss_pred             CCeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHH----------Hh------------c--cc
Confidence            67899999 689999999999999999999999999999998433322111          00            0  11


Q ss_pred             CceeEeecCCCCCCCCCCcchhhH-HHHHHHHHHhccCCCCEEEEcCCCCC--CHHHHHHH------hcCCeEEEEeCCC
Q 047623          129 SNFELLCISKPRSKLPLGFGGKAL-TWVVEALKSRQEGSPDFILIDCPAGI--DAGFITAI------TPANEAVLVTTPD  199 (340)
Q Consensus       129 ~~l~~l~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~D~VIiD~~~~~--~~~~~~~l------~~ad~viiv~~~~  199 (340)
                      .++++++++...       .+..+ ...++.+.   ..+||+||||+||..  +......+      ..+|.+++|+...
T Consensus       152 ~~l~~~~~~~~~-------~p~~l~~~~l~~~~---~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~  221 (295)
T 1ls1_A          152 VGVPVLEVMDGE-------SPESIRRRVEEKAR---LEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAM  221 (295)
T ss_dssp             HTCCEEECCTTC-------CHHHHHHHHHHHHH---HHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGG
T ss_pred             CCeEEEEcCCCC-------CHHHHHHHHHHHHH---hCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCC
Confidence            456666654321       12222 33444443   127999999999864  33222222      2588888888765


Q ss_pred             hhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623          200 ITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL  253 (340)
Q Consensus       200 ~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~  253 (340)
                      . . ..+.+..+.+.. ..+..++|+|+++.+...    -....+...+|.|+.
T Consensus       222 ~-~-~~~~~~~~~~~~-~~~i~givlnk~d~~~~~----g~~~~~~~~~~~pi~  268 (295)
T 1ls1_A          222 T-G-QEALSVARAFDE-KVGVTGLVLTKLDGDARG----GAALSARHVTGKPIY  268 (295)
T ss_dssp             G-T-HHHHHHHHHHHH-HTCCCEEEEECGGGCSSC----HHHHHHHHHHCCCEE
T ss_pred             C-c-HHHHHHHHHHhh-cCCCCEEEEECCCCCccH----HHHHHHHHHHCcCEE
Confidence            3 2 222223333332 355688999999876522    234567778888876

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.45  E-value=2.5e-13  Score=120.39  Aligned_cols=46  Identities=30%  Similarity=0.517  Sum_probs=40.8

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCc
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNL   94 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l   94 (340)
                      .+...+.+.++|||+||||++.+||..++ .|++|++||+|++...+
T Consensus        11 ~~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~   56 (262)
T 1yrb_A           11 GMASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKEL   56 (262)
T ss_dssp             TCCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCC
T ss_pred             CcceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCcccc
Confidence            44568888889999999999999999999 99999999999995544

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=99.42  E-value=1.9e-12  Score=121.94  Aligned_cols=163  Identities=18%  Similarity=0.220  Sum_probs=103.2

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccccc
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRW  128 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  128 (340)
                      .+++|+++ +++|+||||++.+||.+++..|.+|+++|+|++.+.....+..          +            .  ..
T Consensus        97 ~~~vi~i~-G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~----------~------------~--~~  151 (425)
T 2ffh_A           97 DRNLWFLV-GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRL----------L------------G--EK  151 (425)
T ss_dssp             SSEEEEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHH----------H------------H--HH
T ss_pred             CCeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHH----------h------------c--cc
Confidence            56889988 6799999999999999999999999999999984443322210          0            0  01


Q ss_pred             CceeEeecCCCCCCCCCCcchhhH-HHHHHHHHHhccCCCCEEEEcCCCCCC--HHHHH------HHhcCCeEEEEeCCC
Q 047623          129 SNFELLCISKPRSKLPLGFGGKAL-TWVVEALKSRQEGSPDFILIDCPAGID--AGFIT------AITPANEAVLVTTPD  199 (340)
Q Consensus       129 ~~l~~l~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~D~VIiD~~~~~~--~~~~~------~l~~ad~viiv~~~~  199 (340)
                      .++++++.+..       .++..+ ...++.++   ..+||+|||||||...  .....      ....+|.+++|+++.
T Consensus       152 ~gv~v~~~~~~-------~~p~~i~~~~l~~~~---~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~  221 (425)
T 2ffh_A          152 VGVPVLEVMDG-------ESPESIRRRVEEKAR---LEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAM  221 (425)
T ss_dssp             HTCCEEECCTT-------CCHHHHHHHHHHHHH---HTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGG
T ss_pred             CCccEEecCCC-------CCHHHHHHHHHHHHH---HCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEecc
Confidence            45666665432       112222 33444443   2479999999999653  22221      123588899988765


Q ss_pred             hhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623          200 ITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL  253 (340)
Q Consensus       200 ~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~  253 (340)
                      . . ..+....+.+.. .....++|+|+++.+...    -....+.+.+|.++.
T Consensus       222 t-g-q~av~~a~~f~~-~l~i~GVIlTKlD~~~~~----g~alsi~~~~g~PI~  268 (425)
T 2ffh_A          222 T-G-QEALSVARAFDE-KVGVTGLVLTKLDGDARG----GAALSARHVTGKPIY  268 (425)
T ss_dssp             G-T-THHHHHHHHHHH-HTCCCEEEEESGGGCSSC----HHHHHHHHHHCCCEE
T ss_pred             c-h-HHHHHHHHHHHh-cCCceEEEEeCcCCcccH----HHHHHHHHHHCCCEE
Confidence            3 2 233333333332 355689999999876422    234456778888855

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=99.42  E-value=6.8e-12  Score=118.45  Aligned_cols=163  Identities=18%  Similarity=0.169  Sum_probs=98.8

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccccc
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRW  128 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  128 (340)
                      .+++|.++|. +|+||||++.+||.+++++|++|+++|+|+..+.....+..           +.             ..
T Consensus        99 ~p~vIlivG~-~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~-----------~~-------------~~  153 (443)
T 3dm5_A           99 KPTILLMVGI-QGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQ-----------LL-------------DR  153 (443)
T ss_dssp             SSEEEEEECC-TTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHH-----------HH-------------GG
T ss_pred             CCeEEEEECc-CCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHH-----------HH-------------Hh
Confidence            4688888876 99999999999999999999999999999984432211100           00             00


Q ss_pred             CceeEeecCCCCCCCCCCcchh-hHHHHHHHHHHhccCCCCEEEEcCCCCCC--HHHHH------HHhcCCeEEEEeCCC
Q 047623          129 SNFELLCISKPRSKLPLGFGGK-ALTWVVEALKSRQEGSPDFILIDCPAGID--AGFIT------AITPANEAVLVTTPD  199 (340)
Q Consensus       129 ~~l~~l~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~D~VIiD~~~~~~--~~~~~------~l~~ad~viiv~~~~  199 (340)
                      .++.++.....       .++. -....++.+..   ..||+|||||++...  .....      ....+|.+++|+.+.
T Consensus       154 ~gvpv~~~~~~-------~dp~~i~~~al~~a~~---~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~  223 (443)
T 3dm5_A          154 YHIEVFGNPQE-------KDAIKLAKEGVDYFKS---KGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGT  223 (443)
T ss_dssp             GTCEEECCTTC-------CCHHHHHHHHHHHHHH---TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGG
T ss_pred             cCCcEEecCCC-------CCHHHHHHHHHHHHHh---CCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCC
Confidence            22323221111       1111 12233444433   369999999999542  22211      123578899998875


Q ss_pred             hhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623          200 ITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL  253 (340)
Q Consensus       200 ~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~  253 (340)
                      ..  ..+....+.+.+ .....++|+|+++.....    -....+...++.|+.
T Consensus       224 ~g--q~a~~~a~~f~~-~~~i~gVIlTKlD~~~~g----G~~ls~~~~~g~PI~  270 (443)
T 3dm5_A          224 IG--QQAYNQALAFKE-ATPIGSIIVTKLDGSAKG----GGALSAVAATGAPIK  270 (443)
T ss_dssp             GG--GGHHHHHHHHHH-SCTTEEEEEECCSSCSSH----HHHHHHHHTTCCCEE
T ss_pred             Cc--hhHHHHHHHHHh-hCCCeEEEEECCCCcccc----cHHHHHHHHHCCCEE
Confidence            42  122233344433 346789999999886522    224456667888875

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=99.37  E-value=2.3e-11  Score=115.20  Aligned_cols=163  Identities=17%  Similarity=0.192  Sum_probs=99.8

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccc
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKR  127 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  127 (340)
                      ..+++|+|+| .+|+||||++.+||..++++|++|+++|+|++.+.....+.          .+              ..
T Consensus        97 ~~~~vI~ivG-~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~----------~~--------------~~  151 (432)
T 2v3c_C           97 KKQNVILLVG-IQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLK----------QL--------------AE  151 (432)
T ss_dssp             SSCCCEEEEC-CSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSH----------HH--------------HH
T ss_pred             CCCeEEEEEC-CCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHH----------Hh--------------hh
Confidence            3457888987 59999999999999999999999999999998655432110          00              00


Q ss_pred             cCceeEeecC-CCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCH--HHHHHH------hcCCeEEEEeCC
Q 047623          128 WSNFELLCIS-KPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDA--GFITAI------TPANEAVLVTTP  198 (340)
Q Consensus       128 ~~~l~~l~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~--~~~~~l------~~ad~viiv~~~  198 (340)
                      ..++.+++.. ......      .-....++.+     ..||+||||||+....  .....+      ..+|.+++|+.+
T Consensus       152 ~~gv~v~~~~~~~~dp~------~i~~~~l~~~-----~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda  220 (432)
T 2v3c_C          152 KIHVPIYGDETRTKSPV------DIVKEGMEKF-----KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDG  220 (432)
T ss_dssp             HSSCCEECCSSSCCSSS------TTHHHHHHTT-----SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEG
T ss_pred             ccCcceEecCCCCCCHH------HHHHHHHHHh-----hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeec
Confidence            1455555443 111000      1112223222     4799999999997642  122211      258888888876


Q ss_pred             ChhhHHHHHHHHHHHHhcCC-CceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623          199 DITSLRDADRVTGLLECDGI-RDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL  253 (340)
Q Consensus       199 ~~~s~~~~~~~~~~l~~~~~-~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~  253 (340)
                      ....  .+....+.+.. .. +..++|+|+++.....    .....+.+.++.++.
T Consensus       221 ~~g~--~~~~~~~~~~~-~~~~i~gvVlnK~D~~~~~----g~~l~~~~~~~~pi~  269 (432)
T 2v3c_C          221 TIGQ--QAGIQAKAFKE-AVGEIGSIIVTKLDGSAKG----GGALSAVAETKAPIK  269 (432)
T ss_dssp             GGGG--GHHHHHHHHHT-TSCSCEEEEEECSSSCSTT----HHHHHHHHHSSCCEE
T ss_pred             cccH--HHHHHHHHHhh-cccCCeEEEEeCCCCccch----HHHHHHHHHHCCCEE
Confidence            4332  22233333332 34 5589999999876421    123457778888875

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=99.32  E-value=2.6e-11  Score=116.61  Aligned_cols=164  Identities=15%  Similarity=0.130  Sum_probs=96.4

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccc
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKR  127 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  127 (340)
                      ...++|+|+| .+|+||||++.+||.+++++|++|+++|+|++.+....++...           .             .
T Consensus        99 ~~~~vI~ivG-~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~-----------~-------------~  153 (504)
T 2j37_W           99 GKQNVIMFVG-LQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQN-----------A-------------T  153 (504)
T ss_dssp             S--EEEEEEC-STTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHH-----------H-------------H
T ss_pred             CCCeEEEEEC-CCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHH-----------h-------------h
Confidence            4567888885 5899999999999999999999999999999844433222100           0             0


Q ss_pred             cCceeEeecCCCCCCCCCCcchhhH-HHHHHHHHHhccCCCCEEEEcCCCCCC--H-HHHHH-----HhcCCeEEEEeCC
Q 047623          128 WSNFELLCISKPRSKLPLGFGGKAL-TWVVEALKSRQEGSPDFILIDCPAGID--A-GFITA-----ITPANEAVLVTTP  198 (340)
Q Consensus       128 ~~~l~~l~~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~D~VIiD~~~~~~--~-~~~~~-----l~~ad~viiv~~~  198 (340)
                      ..++.+++....       .++..+ ...++.+.   ..+||+||||||+...  . .....     ...+|.+++|+++
T Consensus       154 ~~~i~v~~~~~~-------~dp~~i~~~al~~~~---~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa  223 (504)
T 2j37_W          154 KARIPFYGSYTE-------MDPVIIASEGVEKFK---NENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDA  223 (504)
T ss_dssp             HHTCCEEECCCC-------SCHHHHHHHHHHHHH---HTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEET
T ss_pred             ccCceEEccCCC-------CCHHHHHHHHHHHHH---HCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEec
Confidence            023333332111       111111 22333332   2479999999999763  2 22111     2268999999887


Q ss_pred             ChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623          199 DITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL  253 (340)
Q Consensus       199 ~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~  253 (340)
                      .... . .....+.+.+. .+..++|+|+++.....    .....+.+.+|.|+.
T Consensus       224 ~~g~-~-~~~~a~~~~~~-~~i~gvVlNK~D~~~~~----g~~l~~~~~~g~PI~  271 (504)
T 2j37_W          224 SIGQ-A-CEAQAKAFKDK-VDVASVIVTKLDGHAKG----GGALSAVAATKSPII  271 (504)
T ss_dssp             TCCT-T-HHHHHHHHHHH-HCCCCEEEECTTSCCCC----THHHHHHHHHCCCEE
T ss_pred             cccc-c-HHHHHHHHHhh-cCceEEEEeCCccccch----HHHHHHHHHhCCCeE
Confidence            5431 1 22233333332 33358999999876421    123346677888874

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=99.24  E-value=6.5e-10  Score=100.56  Aligned_cols=167  Identities=17%  Similarity=0.172  Sum_probs=100.0

Q ss_pred             CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccc
Q 047623           47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDK  126 (340)
Q Consensus        47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  126 (340)
                      .+++++|+++|. +|+||||++.+||..++..|.+|+++|+|.+.+.....          +..+..             
T Consensus       101 ~~~~~vi~ivG~-~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eq----------L~~~~~-------------  156 (306)
T 1vma_A          101 PEPPFVIMVVGV-NGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQ----------LKIWGE-------------  156 (306)
T ss_dssp             SSSCEEEEEECC-TTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHH----------HHHHHH-------------
T ss_pred             CCCCeEEEEEcC-CCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHH----------HHHHHH-------------
Confidence            456789999987 99999999999999999999999999999873221100          001100             


Q ss_pred             ccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHH--HHH-------HH-----hcCCeE
Q 047623          127 RWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAG--FIT-------AI-----TPANEA  192 (340)
Q Consensus       127 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~--~~~-------~l-----~~ad~v  192 (340)
                       ..++.+++....       .....  .+.+.+...+..+||+||+|+|+.....  ...       .+     ...|.+
T Consensus       157 -~~gl~~~~~~s~-------~~~~~--v~~~al~~a~~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~v  226 (306)
T 1vma_A          157 -RVGATVISHSEG-------ADPAA--VAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHET  226 (306)
T ss_dssp             -HHTCEEECCSTT-------CCHHH--HHHHHHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEE
T ss_pred             -HcCCcEEecCCc-------cCHHH--HHHHHHHHHHhcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEE
Confidence             023334432211       11111  1122232223347999999999864211  111       11     137888


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeE
Q 047623          193 VLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLG  254 (340)
Q Consensus       193 iiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~  254 (340)
                      ++|+... ...+.+... +.+.+ .....++|+|+++....    .-....+...++.|+..
T Consensus       227 llVlda~-t~~~~l~~a-~~~~~-~~~i~gvVlTk~D~~~~----gG~~l~~~~~~~~Pi~~  281 (306)
T 1vma_A          227 LLVIDAT-TGQNGLVQA-KIFKE-AVNVTGIILTKLDGTAK----GGITLAIARELGIPIKF  281 (306)
T ss_dssp             EEEEEGG-GHHHHHHHH-HHHHH-HSCCCEEEEECGGGCSC----TTHHHHHHHHHCCCEEE
T ss_pred             EEEEECC-CCHHHHHHH-HHHHh-cCCCCEEEEeCCCCccc----hHHHHHHHHHHCCCEEE
Confidence            8888765 233333333 33332 25668899999987652    22356788889988773

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=99.21  E-value=2.6e-10  Score=107.58  Aligned_cols=165  Identities=15%  Similarity=0.174  Sum_probs=95.6

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccc
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKR  127 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  127 (340)
                      ..+++|+++ +.+|+||||++.+||.++++.|++|+++|+|...+.....+.           .+..             
T Consensus        95 ~~~~vI~lv-G~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~-----------~~~~-------------  149 (433)
T 3kl4_A           95 KLPFIIMLV-GVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLL-----------QLGN-------------  149 (433)
T ss_dssp             SSSEEEEEC-CCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHH-----------HHHH-------------
T ss_pred             CCCeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHH-----------HHHH-------------
Confidence            346777777 568999999999999999999999999999986332211110           0000             


Q ss_pred             cCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCC----HHHH----H--HHhcCCeEEEEeC
Q 047623          128 WSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGID----AGFI----T--AITPANEAVLVTT  197 (340)
Q Consensus       128 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~----~~~~----~--~l~~ad~viiv~~  197 (340)
                      ..++.+......       .  .......+.+......+||+||||+++...    ....    .  .....|.+++|++
T Consensus       150 ~~gv~~~~~~~~-------~--dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlD  220 (433)
T 3kl4_A          150 QIGVQVYGEPNN-------Q--NPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVID  220 (433)
T ss_dssp             TTTCCEECCTTC-------S--CHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred             hcCCceeecccc-------C--CHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEe
Confidence            011222211110       1  111122233444333579999999999533    2111    1  1224688888887


Q ss_pred             CChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623          198 PDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL  253 (340)
Q Consensus       198 ~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~  253 (340)
                      ....  ..+....+.+.+ .....++|+|+++.....    -....+...++.|+.
T Consensus       221 a~~g--q~a~~~a~~f~~-~~~~~gVIlTKlD~~a~~----G~als~~~~~g~Pi~  269 (433)
T 3kl4_A          221 ASIG--QKAYDLASRFHQ-ASPIGSVIITKMDGTAKG----GGALSAVVATGATIK  269 (433)
T ss_dssp             GGGG--GGGHHHHHHHHH-HCSSEEEEEECGGGCSCH----HHHHHHHHHHTCEEE
T ss_pred             Cccc--hHHHHHHHHHhc-ccCCcEEEEecccccccc----hHHHHHHHHHCCCEE
Confidence            7542  122233344432 235578999999986522    234456667888864

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=99.16  E-value=4.7e-10  Score=101.17  Aligned_cols=159  Identities=14%  Similarity=0.092  Sum_probs=92.0

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccc
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLAR-LGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDK  126 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~-~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  126 (340)
                      ..+++|+++|. +|+||||++.+||..++. +|++|+++|+|++.......+.          . ....           
T Consensus       103 ~~g~vi~lvG~-~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~----------~-~~~~-----------  159 (296)
T 2px0_A          103 IHSKYIVLFGS-TGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLK----------T-YAEL-----------  159 (296)
T ss_dssp             CCSSEEEEEES-TTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHH----------H-HHTT-----------
T ss_pred             CCCcEEEEECC-CCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHH----------H-HHHh-----------
Confidence            45679999976 899999999999999996 7999999999997433221110          0 0000           


Q ss_pred             ccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCH--H-HHH---HHh--cCCeEEEEeCC
Q 047623          127 RWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDA--G-FIT---AIT--PANEAVLVTTP  198 (340)
Q Consensus       127 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~--~-~~~---~l~--~ad~viiv~~~  198 (340)
                        .++.+...          .....+...+..+     .+||+||+||++....  . ...   .+.  ..+.+++++..
T Consensus       160 --~gl~~~~~----------~~~~~l~~al~~~-----~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~a  222 (296)
T 2px0_A          160 --LQAPLEVC----------YTKEEFQQAKELF-----SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSA  222 (296)
T ss_dssp             --TTCCCCBC----------SSHHHHHHHHHHG-----GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEET
T ss_pred             --cCCCeEec----------CCHHHHHHHHHHh-----cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEEC
Confidence              11111100          1122233333332     3699999999986532  1 111   222  25566666633


Q ss_pred             ChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623          199 DITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL  253 (340)
Q Consensus       199 ~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~  253 (340)
                      .. ....+.++.+.+.  .....++|+|+++.....    -....+...+|.++.
T Consensus       223 t~-~~~~~~~~~~~~~--~l~~~giVltk~D~~~~~----g~~~~~~~~~~~pi~  270 (296)
T 2px0_A          223 TA-KYEDMKHIVKRFS--SVPVNQYIFTKIDETTSL----GSVFNILAESKIGVG  270 (296)
T ss_dssp             TB-CHHHHHHHTTTTS--SSCCCEEEEECTTTCSCC----HHHHHHHHTCSCCCS
T ss_pred             CC-CHHHHHHHHHHHh--cCCCCEEEEeCCCcccch----hHHHHHHHHHCcCEE
Confidence            22 2333334333333  245678999999876422    234566777887765

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.08  E-value=6.1e-10  Score=103.17  Aligned_cols=155  Identities=20%  Similarity=0.176  Sum_probs=85.0

Q ss_pred             CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccc
Q 047623           47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDK  126 (340)
Q Consensus        47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  126 (340)
                      .++..+|+++ +++|+||||++.+|+..++..|++|+++|.|++.+....             .++........    ..
T Consensus        76 ~~~~~~I~i~-G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g-------------~~l~d~~~~~~----~~  137 (355)
T 3p32_A           76 SGNAHRVGIT-GVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGG-------------SILGDKTRMAR----LA  137 (355)
T ss_dssp             CCCSEEEEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-----------------------------CHH----HH
T ss_pred             cCCceEEEEE-CCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccc-------------hhccchhhHHh----hc
Confidence            3456778776 579999999999999999999999999999998442111             01111111110    01


Q ss_pred             ccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHH
Q 047623          127 RWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDA  206 (340)
Q Consensus       127 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~  206 (340)
                      ..+++++.+.+.....   ..........+..+.   ...||++|||||+ +.......+..+|.+++|+.++.....  
T Consensus       138 ~~~~~~i~~~~~~~~~---~~~~~~t~d~i~~~~---~~~~~~iiiDTpG-i~~~~~~~~~~aD~vl~V~d~~~~~~~--  208 (355)
T 3p32_A          138 VHPNAYIRPSPTSGTL---GGVTRATRETVVLLE---AAGFDVILIETVG-VGQSEVAVANMVDTFVLLTLARTGDQL--  208 (355)
T ss_dssp             TCTTEEEECCC--CCH---HHHHHHHHHHHHHHH---HTTCCEEEEEECS-CSSHHHHHHTTCSEEEEEEESSTTCTT--
T ss_pred             cCCCeeEEECCCCccc---cchhHHHHHHHHHHh---hCCCCEEEEeCCC-CCcHHHHHHHhCCEEEEEECCCCCccH--
Confidence            1245555543322100   000111222233332   2479999999987 444455567889999999987543211  


Q ss_pred             HHHHHHHHhcCCCceEEEEecccCC
Q 047623          207 DRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       207 ~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      ..+...+.   .....+|+|+++..
T Consensus       209 ~~l~~~~~---~~p~ivVlNK~Dl~  230 (355)
T 3p32_A          209 QGIKKGVL---ELADIVVVNKADGE  230 (355)
T ss_dssp             TTCCTTSG---GGCSEEEEECCCGG
T ss_pred             HHHHHhHh---hcCCEEEEECCCCc
Confidence            00000000   12567999999864

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=98.91  E-value=7.6e-09  Score=88.69  Aligned_cols=46  Identities=24%  Similarity=0.246  Sum_probs=41.2

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCch
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLD   95 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~   95 (340)
                      .++...|.++||||||||++.++|..++++|++|+++|+|+| ++..
T Consensus         4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q-~~~~   49 (228)
T 2r8r_A            4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETH-GRAE   49 (228)
T ss_dssp             CCCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCT-TCHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCC-CChh
Confidence            456778889999999999999999999999999999999998 5543

>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}

Probab=98.61  E-value=5.6e-07  Score=82.03  Aligned_cols=166  Identities=16%  Similarity=0.170  Sum_probs=112.1

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccccc
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRW  128 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  128 (340)
                      .++.|.++|+-..+||||++..|...+.++|.++..+-...+    ..+.  ..           .....+...      
T Consensus       151 ~~k~i~v~GTD~~VGK~~ts~~L~~~l~~~G~~a~~~~tgqt----g~~~--~~-----------~gi~~Dav~------  207 (349)
T 2obn_A          151 PCRRVLTVGTDMAIGKMSTSLELHWAAKLRGWRSKFLATGQT----GVML--EG-----------DGVALDAVR------  207 (349)
T ss_dssp             SSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEECCSHH----HHHH--HS-----------CSCCGGGSB------
T ss_pred             cceEEEEcCCCccccceeHHHHHHHHHHhcCCcEEEEeccch----hhhh--hc-----------CCcchhHHH------
Confidence            378999999999999999999999999999999988532211    1110  00           000001100      


Q ss_pred             CceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHH----HHHHHh--cCCeEEEEeCCChhh
Q 047623          129 SNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAG----FITAIT--PANEAVLVTTPDITS  202 (340)
Q Consensus       129 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~----~~~~l~--~ad~viiv~~~~~~s  202 (340)
                        ++              +-......+...+    .++||+++|...+++..+    +...+.  ..|.+|++..+...+
T Consensus       208 --~d--------------f~aG~ve~~~~~~----~~~~d~vlVEGqGgl~~P~~~~t~~ll~g~~p~~vILv~~~~~g~  267 (349)
T 2obn_A          208 --VD--------------FAAGAVEQMVMRY----GKNYDILHIEGQGSLLHPGSTATLPLIRGSQPTQLVLVHRAGQTH  267 (349)
T ss_dssp             --HH--------------HHHHHHHHHHHHH----TTTCSEEEECCCCCTTSTTCCTHHHHHHHHCCSEEEEEEETTCCB
T ss_pred             --HH--------------HHhhhHHHHHHHh----ccCCCEEEEeCCCcccCcChHhHHHHHHHcCCCeEEEEECCCCce
Confidence              00              0111233344433    347999999999976422    233443  457899999987777


Q ss_pred             H-----------HHHHHHHHHHHh-----cCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCC
Q 047623          203 L-----------RDADRVTGLLEC-----DGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPED  259 (340)
Q Consensus       203 ~-----------~~~~~~~~~l~~-----~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d  259 (340)
                      +           +.+..+++.+..     .+.+..++++|.+..+...  ...+++.+++.+|+|++..+.+.
T Consensus       268 i~~~~~~~~p~l~~~i~t~e~l~~~~~~~~~~~V~Gi~lN~~~~~~~~--~~~~~~~ie~~~glPv~d~~r~g  338 (349)
T 2obn_A          268 NGNNPHVPIPPLPEVIRLYETVASGGGAFGTVPVVGIALNTAHLDEYA--AKEAIAHTIAETGLPCTDVVRFG  338 (349)
T ss_dssp             CSSCTTSBCCCHHHHHHHHHHHHHTTTTSCCCCEEEEEEECTTSCHHH--HHHHHHHHHHHHCSCEECHHHHC
T ss_pred             ECCCCccCCCCHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCCHHH--HHHHHHHHHHHHCCCEEEEecCC
Confidence            7           888888888865     6778999999998876533  33468899999999999877543

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=98.60  E-value=5.5e-08  Score=99.41  Aligned_cols=88  Identities=14%  Similarity=0.157  Sum_probs=62.2

Q ss_pred             CCCEEEEcCCCCCCH------HHHHHHhcCC-eEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCccccccc
Q 047623          166 SPDFILIDCPAGIDA------GFITAITPAN-EAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDM  238 (340)
Q Consensus       166 ~~D~VIiD~~~~~~~------~~~~~l~~ad-~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~  238 (340)
                      ++|++||.+.+++..      ....+....+ -||+|++....++..+....+.+...+.+..++|+|+.....      
T Consensus       201 ~~D~vvVEGaGGl~~p~~~~~~~adla~~l~~PVILV~d~~lG~i~~~~lt~~~l~~~g~~v~GvI~N~~~~~~------  274 (831)
T 4a0g_A          201 SDLLCLVETAGGVASPGPSGTLQCDLYRPFRLPGILVGDGRLGGISGTIAAYESLKLRGYDIAAVVFEDHGLVN------  274 (831)
T ss_dssp             -CEEEEEECCSSTTCBCTTSCBHHHHTGGGCCCEEEECCCSTTHHHHHHHHHHHHHTTTCCEEEEEEECCSSCT------
T ss_pred             cCCEEEEECCCCccCCCCCCccHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHHCCCcEEEEEEeCCchhH------
Confidence            699999999885421      2223333322 288889999999999999999998888999999999875432      


Q ss_pred             ccHHHHHHH----hCCceeEEecCChH
Q 047623          239 MSVLDIQEM----LGLALLGVIPEDSE  261 (340)
Q Consensus       239 ~~~~~i~~~----~g~~v~~~Ip~d~~  261 (340)
                        .+.+.+.    .++++++.+|+.+.
T Consensus       275 --~~~l~~~l~~~~~v~vLg~lP~~~~  299 (831)
T 4a0g_A          275 --EVPLTSYLRNKVPVLVLPPVPKDPS  299 (831)
T ss_dssp             --HHHHHHHTTTSSCEEEECCCCCCTT
T ss_pred             --HHHHHHHHHhCCCceeeCCCCCCCH
Confidence              3333333    45566888998754

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.57  E-value=6.2e-07  Score=82.37  Aligned_cols=154  Identities=16%  Similarity=0.097  Sum_probs=83.2

Q ss_pred             CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCch-hccCCcCCCcccHHHhhcCCCccccceecc
Q 047623           47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLD-LLLGLENRVNYTVVEVLNGDCRLDQALVRD  125 (340)
Q Consensus        47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  125 (340)
                      .+.+.+|+++| ++|+||||+..+|+..++..|.+|.++|.|++..... .+++...              ..+..    
T Consensus        53 ~~~~~~i~i~G-~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~--------------~~~~~----  113 (341)
T 2p67_A           53 CGNTLRLGVTG-TPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKT--------------RMNDL----  113 (341)
T ss_dssp             CSCSEEEEEEE-CTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-----------------------------CTT----
T ss_pred             cCCCEEEEEEc-CCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccc--------------hHHhh----
Confidence            35678888885 9999999999999999999999999999999844322 1111100              00000    


Q ss_pred             cccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHH
Q 047623          126 KRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRD  205 (340)
Q Consensus       126 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~  205 (340)
                      ...++..+.+.....      ........+.+.+......+|+++|+|||+.... ...+...+|.+++|+.++....  
T Consensus       114 ~~~~~~~i~~~~~~~------~l~g~~~~~~~~~~~~~~~~~~i~liDTpG~~~~-~~~~~~~aD~vl~Vvd~~~~~~--  184 (341)
T 2p67_A          114 ARAEAAFIRPVPSSG------HLGGASQRARELMLLCEAAGYDVVIVETVGVGQS-ETEVARMVDCFISLQIAGGGDD--  184 (341)
T ss_dssp             TTCTTEEEEEECC-----------CHHHHHHHHHHHHHHTTCSEEEEEEECCTTH-HHHHHTTCSEEEEEECC-------
T ss_pred             ccCCCceeecCcccc------ccchhHHHHHHHHHHhhccCCCEEEEeCCCccch-HHHHHHhCCEEEEEEeCCccHH--
Confidence            001222222211110      1111223333433322234799999999986543 3345688999999998854321  


Q ss_pred             HHHHHHHHHhcCCCceEEEEecccCC
Q 047623          206 ADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       206 ~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      ...+....  .+ ....+|+|+++..
T Consensus       185 ~~~l~~~~--~~-~p~ivv~NK~Dl~  207 (341)
T 2p67_A          185 LQGIKKGL--ME-VADLIVINKDDGD  207 (341)
T ss_dssp             -CCCCHHH--HH-HCSEEEECCCCTT
T ss_pred             HHHHHHhh--hc-ccCEEEEECCCCC
Confidence            10000000  01 1356899999864

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.24  E-value=2.1e-05  Score=71.58  Aligned_cols=165  Identities=19%  Similarity=0.168  Sum_probs=93.1

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccc
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKR  127 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  127 (340)
                      +.+.++++.|. .|+||||+...||..+...|.+|++.+.|.........+          ..+ ..             
T Consensus       127 ~~g~vi~lvG~-nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql----------~~~-~~-------------  181 (328)
T 3e70_C          127 EKPYVIMFVGF-NGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQL----------EEH-AK-------------  181 (328)
T ss_dssp             CSSEEEEEECC-TTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHH----------HHH-HH-------------
T ss_pred             CCCeEEEEECC-CCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHH----------HHH-HH-------------
Confidence            56789999966 889999999999999999999999999997633211100          000 00             


Q ss_pred             cCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCC--HHHHH------HHhcCCeEEEEeCCC
Q 047623          128 WSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGID--AGFIT------AITPANEAVLVTTPD  199 (340)
Q Consensus       128 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~--~~~~~------~l~~ad~viiv~~~~  199 (340)
                      .-++.+++.....      .........+....   ..++|++++|+++...  .....      .....|..+++.++.
T Consensus       182 ~~gv~~v~q~~~~------~p~~~v~e~l~~~~---~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~  252 (328)
T 3e70_C          182 RIGVKVIKHSYGA------DPAAVAYDAIQHAK---ARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDAL  252 (328)
T ss_dssp             HTTCEEECCCTTC------CHHHHHHHHHHHHH---HHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGG
T ss_pred             HcCceEEeccccC------CHHHHHHHHHHHHH---hccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecH
Confidence            0122222111110      00111111121111   2269999999998542  11111      123578888887753


Q ss_pred             hhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623          200 ITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL  253 (340)
Q Consensus       200 ~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~  253 (340)
                      ..  ..+....+.+.+ .....++|+|+.+....    .-....+...++.|+.
T Consensus       253 t~--~~~~~~~~~~~~-~~~it~iilTKlD~~a~----~G~~l~~~~~~~~pi~  299 (328)
T 3e70_C          253 AG--NAIVEQARQFNE-AVKIDGIILTKLDADAR----GGAALSISYVIDAPIL  299 (328)
T ss_dssp             GT--THHHHHHHHHHH-HSCCCEEEEECGGGCSC----CHHHHHHHHHHTCCEE
T ss_pred             HH--HHHHHHHHHHHH-hcCCCEEEEeCcCCccc----hhHHHHHHHHHCCCEE
Confidence            33  233333343432 23456899999987542    2234467777888876

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.22  E-value=1.8e-05  Score=75.53  Aligned_cols=168  Identities=14%  Similarity=0.205  Sum_probs=91.9

Q ss_pred             CCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecc
Q 047623           46 AGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRD  125 (340)
Q Consensus        46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  125 (340)
                      ....+.+|+++|. .|+||||+...||..+...|.+|++.+.|.........          +..+ ..         + 
T Consensus       289 ~i~~GeVI~LVGp-NGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQ----------L~~~-~~---------r-  346 (503)
T 2yhs_A          289 EGKAPFVILMVGV-NGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQ----------LQVW-GQ---------R-  346 (503)
T ss_dssp             CSCTTEEEEEECC-TTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHH----------HHHH-HH---------H-
T ss_pred             eccCCeEEEEECC-CcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHH----------HHHH-HH---------h-
Confidence            3456789999955 79999999999999999888899999888652110000          0000 00         0 


Q ss_pred             cccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCH-H--HH------HHHh-----cCCe
Q 047623          126 KRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDA-G--FI------TAIT-----PANE  191 (340)
Q Consensus       126 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~-~--~~------~~l~-----~ad~  191 (340)
                         .++.+++.....      ..   ...+.+.+......+||+||||+++.... .  ..      .++.     ..+.
T Consensus       347 ---~~I~vV~Q~~~~------~p---~~tV~e~l~~a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~e  414 (503)
T 2yhs_A          347 ---NNIPVIAQHTGA------DS---ASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHE  414 (503)
T ss_dssp             ---HTCCEECCSTTC------CH---HHHHHHHHHHHHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSE
T ss_pred             ---cCceEEecccCc------CH---HHHHHHHHHHHHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCe
Confidence               112222211100      01   11122222222234799999999996521 1  11      1111     2457


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeE
Q 047623          192 AVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLG  254 (340)
Q Consensus       192 viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~  254 (340)
                      ++++..+... ...+ ...+.+.. .....++|+|+.+...    ..-....+...++.++..
T Consensus       415 vLLvLDattG-q~al-~~ak~f~~-~~~itgvIlTKLD~ta----kgG~~lsi~~~~~~PI~f  470 (503)
T 2yhs_A          415 VMLTIDASTG-QNAV-SQAKLFHE-AVGLTGITLTKLDGTA----KGGVIFSVADQFGIPIRY  470 (503)
T ss_dssp             EEEEEEGGGT-HHHH-HHHHHHHH-HTCCSEEEEECGGGCS----CCTHHHHHHHHHCCCEEE
T ss_pred             eEEEecCccc-HHHH-HHHHHHHh-hcCCCEEEEEcCCCcc----cccHHHHHHHHHCCCEEE
Confidence            7878775432 2222 22333332 2345679999988654    222355677788888763

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.95  E-value=0.00013  Score=65.75  Aligned_cols=41  Identities=39%  Similarity=0.464  Sum_probs=36.7

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      .+.+|+++| .+|+||||++..||..+...+.+|++.+.|..
T Consensus       101 ~g~vi~lvG-~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~  141 (304)
T 1rj9_A          101 KGRVVLVVG-VNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTF  141 (304)
T ss_dssp             SSSEEEEEC-STTSSHHHHHHHHHHHHHTTTCCEEEECCCCS
T ss_pred             CCeEEEEEC-CCCCcHHHHHHHHHHHHHhcCCEEEEEeecCC
Confidence            567999995 58999999999999999988889999999975

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=97.70  E-value=0.0002  Score=71.94  Aligned_cols=84  Identities=17%  Similarity=0.090  Sum_probs=59.3

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHH
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLD  243 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~  243 (340)
                      .|++.|||||+..+  ......+..+|.+|+|+++.......+....+.+...+.+ +.+++|+++.....  .....++
T Consensus        81 ~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip-~ilviNKiD~~~~~--~~~~~~~  157 (704)
T 2rdo_7           81 PHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVP-RIAFVNKMDRMGAN--FLKVVNQ  157 (704)
T ss_pred             ceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCC-EEEEEeCCCccccc--HHHHHHH
Confidence            59999999999754  4556778899999999998766555556666666655554 55889999875421  2223556


Q ss_pred             HHHHhCCce
Q 047623          244 IQEMLGLAL  252 (340)
Q Consensus       244 i~~~~g~~v  252 (340)
                      +.+.++...
T Consensus       158 l~~~l~~~~  166 (704)
T 2rdo_7          158 IKTRLGANP  166 (704)
T ss_pred             HHHHhCCCc
Confidence            777777653

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.69  E-value=0.00048  Score=63.20  Aligned_cols=153  Identities=17%  Similarity=0.120  Sum_probs=75.2

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCch-hccCCcCCCcccHHHhhcCCCccccceeccc
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLD-LLLGLENRVNYTVVEVLNGDCRLDQALVRDK  126 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  126 (340)
                      +...+|+++ +..|+||||+.-.|+..+...+.+|.++..|++..... .++|              ....+...    .
T Consensus        72 ~~~~~v~lv-G~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~--------------d~~rm~~~----~  132 (349)
T 2www_A           72 PLAFRVGLS-GPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLG--------------DKTRMTEL----S  132 (349)
T ss_dssp             CSCEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC------------------------------CCS----T
T ss_pred             cCceEEEEE-cCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhc--------------hHHHHHHh----c
Confidence            346777777 88999999999999999988899999999998743321 1111              11111100    0


Q ss_pred             ccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHH
Q 047623          127 RWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDA  206 (340)
Q Consensus       127 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~  206 (340)
                      ..+...+-+.+....- . .. .......+..+.   ...||++|+|+++-. .........+|.++.++.+....-  .
T Consensus       133 ~~~~~~v~~~~~~~~l-g-g~-tr~~~~~~~~~~---~~~~~~iliDT~Gi~-~~~~~l~~~~d~vl~V~d~~~~~~--~  203 (349)
T 2www_A          133 RDMNAYIRPSPTRGTL-G-GV-TRTTNEAILLCE---GAGYDIILIETVGVG-QSEFAVADMVDMFVLLLPPAGGDE--L  203 (349)
T ss_dssp             TCTTEEEECC------------CTTHHHHHHHHH---HTTCSEEEEECCCC---CHHHHHTTCSEEEEEECCC-------
T ss_pred             CCCCEEEEecCCcccc-c-cc-hHHHHHHHHhhc---cCCCCEEEEECCCcc-hhhhhHHhhCCEEEEEEcCCcchh--H
Confidence            0022221111100000 0 00 111111122221   237999999999843 223445678999999998764321  1


Q ss_pred             HHHHHHHHhcCCCceEEEEecccCC
Q 047623          207 DRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       207 ~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      ..+...+  ... ...+|+|+++..
T Consensus       204 ~~i~~~i--l~~-~~ivVlNK~Dl~  225 (349)
T 2www_A          204 QGIKRGI--IEM-ADLVAVTKSDGD  225 (349)
T ss_dssp             ---------CCS-CSEEEECCCSGG
T ss_pred             HHhHHHH--Hhc-CCEEEEeeecCC
Confidence            1111111  112 346888998753

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=97.60  E-value=0.00021  Score=69.32  Aligned_cols=85  Identities=12%  Similarity=0.130  Sum_probs=60.8

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHH
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLD  243 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~  243 (340)
                      .+.+.|+|||+..  .......+..+|.+++|+............+.+.+...+.+ +.+++|+.+......  .....+
T Consensus        81 ~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ip-iivviNK~Dl~~~~~--~~~~~~  157 (529)
T 2h5e_A           81 DCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTP-ILTFMNKLDRDIRDP--MELLDE  157 (529)
T ss_dssp             TEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCC-EEEEEECTTSCCSCH--HHHHHH
T ss_pred             CeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCC-EEEEEcCcCCccccH--HHHHHH
Confidence            5889999999964  45567788899999999998765455566666666655555 789999998754211  123567


Q ss_pred             HHHHhCCcee
Q 047623          244 IQEMLGLALL  253 (340)
Q Consensus       244 i~~~~g~~v~  253 (340)
                      +++.++.+..
T Consensus       158 i~~~l~~~~~  167 (529)
T 2h5e_A          158 VENELKIGCA  167 (529)
T ss_dssp             HHHHHCCEEE
T ss_pred             HHHHhCCCcc
Confidence            7788876543

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=97.56  E-value=0.0041  Score=57.05  Aligned_cols=43  Identities=28%  Similarity=0.329  Sum_probs=37.6

Q ss_pred             CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      .+.+.+|++.| ..|+||||++..||..+...+.+|++.+.|..
T Consensus       154 ~~~g~vi~lvG-~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~  196 (359)
T 2og2_A          154 FRKPAVIMIVG-VNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTF  196 (359)
T ss_dssp             SSSSEEEEEEC-CTTSCHHHHHHHHHHHHHHTTCCEEEECCCCS
T ss_pred             cCCCeEEEEEc-CCCChHHHHHHHHHhhccccCCEEEEeccccc
Confidence            45678999996 58999999999999999988889999988865

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=97.43  E-value=0.0056  Score=54.83  Aligned_cols=43  Identities=28%  Similarity=0.329  Sum_probs=37.5

Q ss_pred             CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      .+.+.++++.| ..|+||||+...||..+...+.+|.+.+.|..
T Consensus        97 ~~~g~vi~lvG-~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~  139 (302)
T 3b9q_A           97 FRKPAVIMIVG-VNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTF  139 (302)
T ss_dssp             SSSCEEEEEEC-CTTSCHHHHHHHHHHHHHHTTCCEEEECCCCS
T ss_pred             cCCCcEEEEEc-CCCCCHHHHHHHHHHHHHHcCCeEEEEeeccc
Confidence            45678999996 58999999999999999988889999988865

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.40  E-value=0.00024  Score=58.10  Aligned_cols=41  Identities=20%  Similarity=0.111  Sum_probs=36.0

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      ++++|.|+| ..|+||||++..|+..|.++|++|.++..|+.
T Consensus         3 ~~~~i~i~G-~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~~   43 (169)
T 1xjc_A            3 AMNVWQVVG-YKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH   43 (169)
T ss_dssp             -CCEEEEEC-CTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred             CCEEEEEEC-CCCCCHHHHHHHHHHhhHhcCCeeeEEEeCCC
Confidence            467899987 55999999999999999999999999999986

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=97.38  E-value=0.0012  Score=60.67  Aligned_cols=41  Identities=37%  Similarity=0.355  Sum_probs=35.5

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      .+.++.+. +++|+||||+|.++|..+++.|.+|++||++..
T Consensus        62 ~G~ii~I~-G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s  102 (356)
T 1u94_A           62 MGRIVEIY-GPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA  102 (356)
T ss_dssp             TTSEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CCeEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            34566666 799999999999999999999999999999754

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.22  E-value=0.0007  Score=57.20  Aligned_cols=38  Identities=29%  Similarity=0.339  Sum_probs=31.1

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      .+.++.+. +..|+||||++.++|.   ..|.+|+++|.+.+
T Consensus        19 ~G~~~~i~-G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~~   56 (220)
T 2cvh_A           19 PGVLTQVY-GPYASGKTTLALQTGL---LSGKKVAYVDTEGG   56 (220)
T ss_dssp             TTSEEEEE-CSTTSSHHHHHHHHHH---HHCSEEEEEESSCC
T ss_pred             CCEEEEEE-CCCCCCHHHHHHHHHH---HcCCcEEEEECCCC
Confidence            34555555 8899999999999998   56889999999864

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.20  E-value=0.0077  Score=55.16  Aligned_cols=42  Identities=26%  Similarity=0.241  Sum_probs=36.1

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      +.+.++.|.|. .|+||||++.++|..++..|.+|++||....
T Consensus        59 ~~G~i~~I~Gp-pGsGKSTLal~la~~~~~~gg~VlyId~E~s  100 (356)
T 3hr8_A           59 PRGRIVEIFGQ-ESSGKTTLALHAIAEAQKMGGVAAFIDAEHA  100 (356)
T ss_dssp             ETTEEEEEEES-TTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             cCCcEEEEECC-CCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence            44577777755 8999999999999999999999999998865

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=97.18  E-value=0.0019  Score=58.02  Aligned_cols=83  Identities=11%  Similarity=0.116  Sum_probs=51.7

Q ss_pred             CCCEEEEcCCCCCC------------HHHHHHHhcCCeEEEEeCCChh-hHHHHHHHHHHHHhcCCCceEEEEecccCCc
Q 047623          166 SPDFILIDCPAGID------------AGFITAITPANEAVLVTTPDIT-SLRDADRVTGLLECDGIRDIKMVVNRVRTDM  232 (340)
Q Consensus       166 ~~D~VIiD~~~~~~------------~~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~  232 (340)
                      .+.++|+|||+...            ......+..+|.++++++.+.. +.......++.+...+. .+.+|+|+++...
T Consensus        58 ~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~-pvilV~NK~Dl~~  136 (308)
T 3iev_A           58 EAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNK-PVIVVINKIDKIG  136 (308)
T ss_dssp             TEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCC-CEEEEEECGGGSS
T ss_pred             CCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCC-CEEEEEECccCCC
Confidence            47899999999642            2335567789999999988743 33333333666665443 5779999998641


Q ss_pred             ccccccccHHHHHHHhC
Q 047623          233 IKGEDMMSVLDIQEMLG  249 (340)
Q Consensus       233 ~~~~~~~~~~~i~~~~g  249 (340)
                      ...........+.+.++
T Consensus       137 ~~~~~~~~~~~l~~~~~  153 (308)
T 3iev_A          137 PAKNVLPLIDEIHKKHP  153 (308)
T ss_dssp             SGGGGHHHHHHHHHHCT
T ss_pred             CHHHHHHHHHHHHHhcc
Confidence            11222223445666664

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=97.17  E-value=0.0059  Score=50.25  Aligned_cols=63  Identities=17%  Similarity=0.082  Sum_probs=47.3

Q ss_pred             CCEEEEcCCCC--CCHHHHHHHhcCCeEEEEeCCCh-hhHHHHHHHHHHHHhcCCCceEEEEeccc
Q 047623          167 PDFILIDCPAG--IDAGFITAITPANEAVLVTTPDI-TSLRDADRVTGLLECDGIRDIKMVVNRVR  229 (340)
Q Consensus       167 ~D~VIiD~~~~--~~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~vviN~~~  229 (340)
                      +.+.|+|+|+.  ........+..+|.++++.+.+. .+...+...+..+.......+.+|+|+.+
T Consensus        93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D  158 (208)
T 3clv_A           93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKID  158 (208)
T ss_dssp             EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTT
T ss_pred             eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCC
Confidence            78999999984  24455667788999999998754 45666666666666533367889999998

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=97.16  E-value=0.0029  Score=58.27  Aligned_cols=41  Identities=27%  Similarity=0.270  Sum_probs=35.4

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      .+.++.|. +..|+||||+|.++|..+++.|.+|++||++..
T Consensus        73 ~G~li~I~-G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s  113 (366)
T 1xp8_A           73 RGRITEIY-GPESGGKTTLALAIVAQAQKAGGTCAFIDAEHA  113 (366)
T ss_dssp             TTSEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CCcEEEEE-cCCCCChHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence            34566665 678899999999999999999999999999965

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.13  E-value=0.0058  Score=55.62  Aligned_cols=127  Identities=20%  Similarity=0.157  Sum_probs=71.7

Q ss_pred             CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCc-hhccCCcCCCcccHHHhhcCCCccccceecc
Q 047623           47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNL-DLLLGLENRVNYTVVEVLNGDCRLDQALVRD  125 (340)
Q Consensus        47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  125 (340)
                      .+.+.+++++ +..|+||||+...|+..+...+.+|.++..|++.... ....+...              .+... .  
T Consensus        52 ~~~g~~v~i~-G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~--------------~i~~v-~--  113 (337)
T 2qm8_A           52 TGRAIRVGIT-GVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT--------------RMARL-A--  113 (337)
T ss_dssp             CCCSEEEEEE-CCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGG--------------GSTTG-G--
T ss_pred             cCCCeEEEEE-CCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhh--------------hheee-c--
Confidence            3566788888 7788999999999999998888899999988752211 01111110              00000 0  


Q ss_pred             cccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCC
Q 047623          126 KRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPD  199 (340)
Q Consensus       126 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~  199 (340)
                       ..+++..-+.+..     ..+ ........+.+.......+|++||||++-... ...+...+|.++++..+.
T Consensus       114 -q~~~~~~~~~~~~-----~~l-~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~-~~~v~~~~d~vl~v~d~~  179 (337)
T 2qm8_A          114 -IDRNAFIRPSPSS-----GTL-GGVAAKTRETMLLCEAAGFDVILVETVGVGQS-ETAVADLTDFFLVLMLPG  179 (337)
T ss_dssp             -GCTTEEEECCCCC-----SSH-HHHHHHHHHHHHHHHHTTCCEEEEEECSSSSC-HHHHHTTSSEEEEEECSC
T ss_pred             -cCcccccccCccc-----ccc-cchHHHHHHHHHHHhcCCCCEEEEECCCCCcc-hhhHHhhCCEEEEEEcCC
Confidence             0123322211111     001 11222233333222234799999999995432 234457899999888764

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=97.13  E-value=0.003  Score=59.02  Aligned_cols=66  Identities=21%  Similarity=0.314  Sum_probs=51.0

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      .+.+.|+|||+...  ..+...+..+|.++++++.+........+.+..+...+.+.+.+++|+.+..
T Consensus        74 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~  141 (405)
T 2c78_A           74 KRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMV  141 (405)
T ss_dssp             SCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGC
T ss_pred             CeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECcccc
Confidence            48899999998653  2344566789999999998766566677777777777777788999999864

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=96.85  E-value=0.009  Score=59.78  Aligned_cols=83  Identities=16%  Similarity=0.107  Sum_probs=57.2

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHH
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLD  243 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~  243 (340)
                      .+.+.|+|||+..  .......+..+|.+++|++.............+.+...+. .+.+|+|+++....  ......++
T Consensus        74 ~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~-p~ilviNK~Dl~~~--~~~~~~~~  150 (693)
T 2xex_A           74 GHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGV-PRIVFVNKMDKLGA--NFEYSVST  150 (693)
T ss_dssp             TEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTC-CEEEEEECTTSTTC--CHHHHHHH
T ss_pred             CeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCC-CEEEEEECCCcccc--chHHHHHH
Confidence            4889999999964  5666778889999999999865444444555556665554 46688999987542  11223556


Q ss_pred             HHHHhCCc
Q 047623          244 IQEMLGLA  251 (340)
Q Consensus       244 i~~~~g~~  251 (340)
                      +.+.++..
T Consensus       151 l~~~l~~~  158 (693)
T 2xex_A          151 LHDRLQAN  158 (693)
T ss_dssp             HHHHHCCC
T ss_pred             HHHHhCCC
Confidence            77777754

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=96.85  E-value=0.015  Score=47.51  Aligned_cols=66  Identities=11%  Similarity=-0.025  Sum_probs=41.1

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD---GIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~  231 (340)
                      .+++.|+|+|+..  .......+..+|.++++...+ ..+...+...++.+...   ....+.+|+|+.+..
T Consensus        68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~  139 (190)
T 3con_A           68 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLP  139 (190)
T ss_dssp             EEEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCS
T ss_pred             EEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCC
Confidence            3789999999954  333345567799888888764 45666666666665542   234678999999854

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.79  E-value=0.0021  Score=53.02  Aligned_cols=41  Identities=37%  Similarity=0.460  Sum_probs=34.8

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      .++.+|.+. +..|+||||++..||..+...|.++.++|.|.
T Consensus        11 ~~~~~i~l~-G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~   51 (186)
T 2yvu_A           11 EKGIVVWLT-GLPGSGKTTIATRLADLLQKEGYRVEVLDGDW   51 (186)
T ss_dssp             SCCEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred             CCCcEEEEE-cCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH
Confidence            445667666 77899999999999999999999999998763

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=96.79  E-value=0.018  Score=46.61  Aligned_cols=65  Identities=9%  Similarity=-0.037  Sum_probs=45.0

Q ss_pred             CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623          167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD---GIRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~  231 (340)
                      +.+.|+|+|+..  .......+..+|.++++...+ ..++..+...++.+...   ....+.+|+|+.+-.
T Consensus        66 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  136 (187)
T 2a9k_A           66 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE  136 (187)
T ss_dssp             EEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGG
T ss_pred             EEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence            688999999854  334455677899999998775 45566666655555432   134678999999853

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=96.75  E-value=0.0068  Score=55.92  Aligned_cols=64  Identities=16%  Similarity=0.139  Sum_probs=50.5

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEe-cccC
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVN-RVRT  230 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN-~~~~  230 (340)
                      ++.+.|+|||+...  ......+..+|.++++++ +......+.+.+..+...+.+.+.+++| +.+.
T Consensus        59 ~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl  125 (370)
T 2elf_A           59 GRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST  125 (370)
T ss_dssp             SSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS
T ss_pred             CeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC
Confidence            47799999999654  334556788999999999 7666777777777777778777688899 9987

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.74  E-value=0.018  Score=45.88  Aligned_cols=65  Identities=15%  Similarity=0.056  Sum_probs=44.5

Q ss_pred             CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc----CCCceEEEEecccCC
Q 047623          167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD----GIRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~----~~~~~~vviN~~~~~  231 (340)
                      +.+.|+|+|+..  .......+..+|.++++...+ ..+...+....+.+...    ....+.+|+|+.+-.
T Consensus        51 ~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~  122 (172)
T 2erx_A           51 CTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES  122 (172)
T ss_dssp             EEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGG
T ss_pred             EEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccc
Confidence            678999999955  334455677899999998875 44555566665555542    224578999999853

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=96.72  E-value=0.011  Score=59.00  Aligned_cols=83  Identities=16%  Similarity=0.149  Sum_probs=57.4

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHH
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLD  243 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~  243 (340)
                      .+.+.|+|||+..+  ......+..+|.+++|+++..............+...+.+ +.+++|+++....  .......+
T Consensus        76 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~--~~~~~~~~  152 (691)
T 1dar_A           76 DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVP-RIAFANKMDKTGA--DLWLVIRT  152 (691)
T ss_dssp             TEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCC-EEEEEECTTSTTC--CHHHHHHH
T ss_pred             CeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCC-EEEEEECCCcccC--CHHHHHHH
Confidence            48899999999754  4556678899999999998765444555556666665554 5688999987532  11223556


Q ss_pred             HHHHhCCc
Q 047623          244 IQEMLGLA  251 (340)
Q Consensus       244 i~~~~g~~  251 (340)
                      +.+.++..
T Consensus       153 l~~~l~~~  160 (691)
T 1dar_A          153 MQERLGAR  160 (691)
T ss_dssp             HHHTTCCC
T ss_pred             HHHHhCCC
Confidence            77777754

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.72  E-value=0.008  Score=47.82  Aligned_cols=66  Identities=18%  Similarity=0.106  Sum_probs=45.7

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc-CCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD-GIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~-~~~~~~vviN~~~~~  231 (340)
                      .+.+.|+|+|+..  .......+..+|.++++...+ ..+...+...++.+... ....+.+|+|+.+-.
T Consensus        53 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~  122 (168)
T 1z2a_A           53 DVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLL  122 (168)
T ss_dssp             EEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGG
T ss_pred             EEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccC
Confidence            3788999999843  334456678899999998875 44566666666655442 234678999999853

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=96.70  E-value=0.019  Score=57.64  Aligned_cols=85  Identities=18%  Similarity=0.144  Sum_probs=65.6

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHH
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLD  243 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~  243 (340)
                      +|-+=|||||+..+  .....+|..+|.+++|++....-..++..+.+.+.+.+++ ..+++|+.++...  +.....++
T Consensus        84 ~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp-~i~~iNKiDr~~a--~~~~~~~e  160 (709)
T 4fn5_A           84 NYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVP-RIVYVNKMDRQGA--NFLRVVEQ  160 (709)
T ss_dssp             CEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCC-EEEEEECSSSTTC--CHHHHHHH
T ss_pred             CEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCC-eEEEEccccccCc--cHHHHHHH
Confidence            46778999999764  4557789999999999999877777888899998888886 4688999998542  22234667


Q ss_pred             HHHHhCCcee
Q 047623          244 IQEMLGLALL  253 (340)
Q Consensus       244 i~~~~g~~v~  253 (340)
                      +.+.++....
T Consensus       161 i~~~l~~~~~  170 (709)
T 4fn5_A          161 IKKRLGHTPV  170 (709)
T ss_dssp             HHHHHCSCEE
T ss_pred             hhhhccccee
Confidence            7888875543

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=96.69  E-value=0.0095  Score=54.48  Aligned_cols=41  Identities=29%  Similarity=0.268  Sum_probs=35.4

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      .+.++.+. +..|+||||++.++|..+++.|.+|+++|++..
T Consensus        60 ~G~iv~I~-G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~  100 (349)
T 2zr9_A           60 RGRVIEIY-GPESSGKTTVALHAVANAQAAGGIAAFIDAEHA  100 (349)
T ss_dssp             TTSEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CCeEEEEE-CCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence            45567776 678999999999999999999999999999854

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.68  E-value=0.036  Score=43.77  Aligned_cols=65  Identities=9%  Similarity=-0.037  Sum_probs=44.4

Q ss_pred             CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623          167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD---GIRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~  231 (340)
                      +.+.|+|+|+..  .......+..+|.++++...+ ..+...+...++.+...   ....+.+|+|+.+..
T Consensus        52 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  122 (168)
T 1u8z_A           52 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE  122 (168)
T ss_dssp             EEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGG
T ss_pred             EEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECcccc
Confidence            688999999854  334455677899999988775 45566666665555442   234678999999853

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.61  E-value=0.0023  Score=55.93  Aligned_cols=39  Identities=28%  Similarity=0.519  Sum_probs=32.9

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      +.+|.+. +-.|+||||+|..|+..|...|..++++|.|.
T Consensus         4 ~~lIvl~-G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~   42 (260)
T 3a4m_A            4 IMLIILT-GLPGVGKSTFSKNLAKILSKNNIDVIVLGSDL   42 (260)
T ss_dssp             CEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEECTHH
T ss_pred             CEEEEEE-cCCCCCHHHHHHHHHHHHHhCCCEEEEECchH
Confidence            4677776 55999999999999999998999998887763

>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10

Probab=96.56  E-value=0.0089  Score=54.44  Aligned_cols=136  Identities=18%  Similarity=0.261  Sum_probs=82.8

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccccc
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRW  128 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  128 (340)
                      .++.|.++|+-.++|||+++..|...+.++|.++..+-...+    ..+.+...  +.          ..+..       
T Consensus       168 ~~~ri~v~GTDt~vGKt~t~~~L~~~l~~~G~~v~~v~tgqt----g~li~~~~--gv----------~~D~~-------  224 (350)
T 2g0t_A          168 KIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQT----GILIGADA--GY----------VIDAV-------  224 (350)
T ss_dssp             CSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECSHH----HHHTTCSE--EC----------CGGGS-------
T ss_pred             cceEEEEecCCCCccCccHHHHHHHHHHhcCCeEEEEccCce----eeeeccCC--CC----------CCCce-------
Confidence            478999999999999999999999999999999988643322    11110000  00          00000       


Q ss_pred             CceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHH-----HHHHH--hcCCeEEEEeCCC--
Q 047623          129 SNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAG-----FITAI--TPANEAVLVTTPD--  199 (340)
Q Consensus       129 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~-----~~~~l--~~ad~viiv~~~~--  199 (340)
                                     ....-......++..+.   ++++|++|+...+++...     ....+  ...|.+|+...+.  
T Consensus       225 ---------------~~~~~ag~~e~~i~~~~---~~~~D~ivVEGqGgl~~P~~~~v~~~ll~g~~p~~vIl~h~~~r~  286 (350)
T 2g0t_A          225 ---------------PADFVSGVVEKAVLKLE---KTGKEIVFVEGQGALRHPAYGQVTLGLLYGSNPDVVFLVHDPSRD  286 (350)
T ss_dssp             ---------------BGGGHHHHHHHHHHHHH---HTTCSEEEEECCSCTTCTTTHHHHHHHHHHHCCSEEEEECCTTCS
T ss_pred             ---------------ecchhhHHHHhhHHHhh---hcCCCEEEEccCeeccccCchHHHHHHHcCCCCCEEEEEeCCCCc
Confidence                           00011112233333332   347999999999976322     22233  3578888866553  


Q ss_pred             ---------h-hhHHHHHHHHHHHHhcCCCceEEE-Eec
Q 047623          200 ---------I-TSLRDADRVTGLLECDGIRDIKMV-VNR  227 (340)
Q Consensus       200 ---------~-~s~~~~~~~~~~l~~~~~~~~~vv-iN~  227 (340)
                               . .+++...++++.+.  +.+.++++ +|.
T Consensus       287 ~~~~~~~~~~~~~i~~~i~~ie~l~--~~~V~gi~~lN~  323 (350)
T 2g0t_A          287 HFESFPEIPKKPDFEEERRLIETLS--NAKVIGGVSLNG  323 (350)
T ss_dssp             SCTTCTTSSCCCCHHHHHHHHHHSS--SCEEEEEECSSC
T ss_pred             cccCCCcccCCcCHHHHHHHHHHhc--CCcEEEEEEcCc
Confidence                     2 56666666666665  56778888 887

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.52  E-value=0.0044  Score=50.79  Aligned_cols=42  Identities=19%  Similarity=0.141  Sum_probs=36.5

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      .|+++++|+| ..|+||||+...|...+...|++|..+..++.
T Consensus         4 ~~~~~i~i~G-~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~   45 (174)
T 1np6_A            4 TMIPLLAFAA-WSGTGKTTLLKKLIPALCARGIRPGLIKHTHH   45 (174)
T ss_dssp             -CCCEEEEEC-CTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             CcceEEEEEe-CCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence            4567888886 77999999999999999999999999999876

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=96.51  E-value=0.073  Score=43.76  Aligned_cols=65  Identities=9%  Similarity=-0.039  Sum_probs=45.3

Q ss_pred             CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC---CCceEEEEecccCC
Q 047623          167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG---IRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~---~~~~~vviN~~~~~  231 (340)
                      +.+.|+|+|+..  .......+..+|.++++...+ ..++..+...++.+....   ...+.+|+|+.+-.
T Consensus        62 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  132 (206)
T 2bov_A           62 VQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE  132 (206)
T ss_dssp             EEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCG
T ss_pred             EEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcc
Confidence            678999999854  334455677899988888764 456666666666665421   34678999999864

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=96.50  E-value=0.0058  Score=56.95  Aligned_cols=66  Identities=20%  Similarity=0.344  Sum_probs=49.2

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      .+.+.|+|||+...  ..+...+..+|.+++++..+........+.+..+...+.+.+.+++|+.+..
T Consensus        65 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~  132 (397)
T 1d2e_A           65 ARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAV  132 (397)
T ss_dssp             SCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGC
T ss_pred             CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccC
Confidence            58899999998643  2234445679999999998775556666666777777777778999999864

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=96.48  E-value=0.013  Score=52.55  Aligned_cols=38  Identities=16%  Similarity=0.199  Sum_probs=31.9

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHC--CCcEEEEecCCC
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARL--GFSVVAIDADVG   90 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~--g~~VlliD~D~~   90 (340)
                      ++.+ .+..|+||||++.+++..+++.  |.+|++||....
T Consensus        30 iteI-~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s   69 (333)
T 3io5_A           30 LLIL-AGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFG   69 (333)
T ss_dssp             EEEE-EESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCC
T ss_pred             eEEE-ECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccch
Confidence            4444 4679999999999999998876  889999998765

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=96.44  E-value=0.011  Score=50.46  Aligned_cols=38  Identities=16%  Similarity=0.072  Sum_probs=31.5

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      +.++.+ .+.-|+||||.+..++..++.+|.+|+++..-
T Consensus        12 G~i~li-tG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~   49 (223)
T 2b8t_A           12 GWIEFI-TGPMFAGKTAELIRRLHRLEYADVKYLVFKPK   49 (223)
T ss_dssp             CEEEEE-ECSTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             cEEEEE-ECCCCCcHHHHHHHHHHHHHhcCCEEEEEEec
Confidence            445544 47789999999999999999999999999543

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=96.38  E-value=0.028  Score=46.49  Aligned_cols=66  Identities=15%  Similarity=0.060  Sum_probs=45.7

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD---GIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~  231 (340)
                      .+.+.|+|+|+..  .......+..+|.++++...+ ..++..+...++.+...   ....+.+|.|+.+-.
T Consensus        71 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  142 (201)
T 3oes_A           71 EFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLS  142 (201)
T ss_dssp             CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCG
T ss_pred             EEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCc
Confidence            4788999999843  233345667899998888765 55677777777766543   123578999999853

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=96.24  E-value=0.027  Score=45.46  Aligned_cols=65  Identities=22%  Similarity=0.093  Sum_probs=42.8

Q ss_pred             CCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc-C--CCceEEEEecccCC
Q 047623          167 PDFILIDCPAGID--AGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD-G--IRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~-~--~~~~~vviN~~~~~  231 (340)
                      +.+.|+|+|+...  ......+..+|.++++...+ ..+...+....+.+... .  ...+.+|.|+.+-.
T Consensus        54 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  124 (181)
T 3t5g_A           54 YHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH  124 (181)
T ss_dssp             EEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCT
T ss_pred             EEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccch
Confidence            6788999998542  22334556799988888764 45666666666555432 1  23577999999853

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=96.17  E-value=0.032  Score=48.50  Aligned_cols=87  Identities=13%  Similarity=0.077  Sum_probs=55.6

Q ss_pred             CCEEEEcCCCCCC--H----------HHHHHH--hcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCc
Q 047623          167 PDFILIDCPAGID--A----------GFITAI--TPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDM  232 (340)
Q Consensus       167 ~D~VIiD~~~~~~--~----------~~~~~l--~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~  232 (340)
                      .++.|+|+|+...  .          .....+  ..+|.++++++.+.  ......+...+.+.+ ..+.+|+|+.+...
T Consensus        48 ~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~-~pvilv~NK~Dl~~  124 (256)
T 3iby_A           48 HLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELG-KPVVVALNMMDIAE  124 (256)
T ss_dssp             EEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSC-SCEEEEEECHHHHH
T ss_pred             eEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcC-CCEEEEEEChhcCC
Confidence            5788999998432  1          223344  67999999998755  444445555565544 35779999988532


Q ss_pred             ccccccccHHHHHHHhCCceeEEec
Q 047623          233 IKGEDMMSVLDIQEMLGLALLGVIP  257 (340)
Q Consensus       233 ~~~~~~~~~~~i~~~~g~~v~~~Ip  257 (340)
                      .. ........+.+.+|.+++.+-.
T Consensus       125 ~~-~~~~~~~~l~~~lg~~vi~~SA  148 (256)
T 3iby_A          125 HR-GISIDTEKLESLLGCSVIPIQA  148 (256)
T ss_dssp             HT-TCEECHHHHHHHHCSCEEECBG
T ss_pred             cC-CcHHHHHHHHHHcCCCEEEEEC
Confidence            11 1223466788889988775443

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=96.06  E-value=0.02  Score=51.18  Aligned_cols=66  Identities=18%  Similarity=0.203  Sum_probs=42.6

Q ss_pred             CCCEEEEcCCCCCC----------HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhc-CCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGID----------AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECD-GIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~----------~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~-~~~~~~vviN~~~~~  231 (340)
                      .+.++++|||+...          ......+..+|.++++++.+..--.....+.+.+... ....+.+|+|+++..
T Consensus        54 ~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~  130 (301)
T 1wf3_A           54 RRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAA  130 (301)
T ss_dssp             TEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGC
T ss_pred             CcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccC
Confidence            46789999999543          1234456789999999987532112224445566554 124577999999864

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.03  E-value=0.0093  Score=49.80  Aligned_cols=42  Identities=29%  Similarity=0.302  Sum_probs=35.8

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      +.+.+|+++ +..|+||||++..|+..+...|.+|.+++.|..
T Consensus        20 ~~~~~i~i~-G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~   61 (201)
T 1rz3_A           20 AGRLVLGID-GLSRSGKTTLANQLSQTLREQGISVCVFHMDDH   61 (201)
T ss_dssp             SSSEEEEEE-ECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred             CCCeEEEEE-CCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcc
Confidence            455778877 668899999999999999888889999988865

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=95.96  E-value=0.02  Score=45.14  Aligned_cols=65  Identities=15%  Similarity=0.184  Sum_probs=39.8

Q ss_pred             CCEEEEcCCCCCC---------HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCc
Q 047623          167 PDFILIDCPAGID---------AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDM  232 (340)
Q Consensus       167 ~D~VIiD~~~~~~---------~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~  232 (340)
                      ..+.|+|+|+...         ......+..+|.++++.+....--.....+.+.+...+ ..+.+|.|+.+...
T Consensus        49 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~-~p~ilv~nK~Dl~~  122 (161)
T 2dyk_A           49 GRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKG-KPVILVATKVDDPK  122 (161)
T ss_dssp             EEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHT-CCEEEEEECCCSGG
T ss_pred             ceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcC-CCEEEEEECccccc
Confidence            4678899988543         12234457799999988876421112233444554433 34789999998643

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=95.92  E-value=0.0076  Score=49.46  Aligned_cols=38  Identities=32%  Similarity=0.399  Sum_probs=31.4

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      |++|.+. +-.|+||||++..|+..+...|+++..++.|
T Consensus         1 M~~I~i~-G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~   38 (194)
T 1nks_A            1 MKIGIVT-GIPGVGKSTVLAKVKEILDNQGINNKIINYG   38 (194)
T ss_dssp             CEEEEEE-ECTTSCHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred             CeEEEEE-CCCCCCHHHHHHHHHHHHHhcCceEEEEECC
Confidence            3567666 5678999999999999999889999888654

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=95.91  E-value=0.015  Score=53.06  Aligned_cols=41  Identities=17%  Similarity=0.179  Sum_probs=32.5

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHH------CCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLAR------LGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~------~g~~VlliD~D~~   90 (340)
                      .+.++.++ +..|+|||+++.++|...+.      .|.+|++||++..
T Consensus       121 ~G~i~~I~-G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~  167 (343)
T 1v5w_A          121 SMAITEAF-GEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT  167 (343)
T ss_dssp             SSEEEEEE-CCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred             CCeEEEEE-CCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence            34555555 78899999999999987654      5789999999864

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=95.85  E-value=0.0074  Score=52.34  Aligned_cols=44  Identities=23%  Similarity=0.296  Sum_probs=32.8

Q ss_pred             CCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHH-----CCCcEEEEecCCC
Q 047623           46 AGETPRVVVITSGKGGVGKTTTTANVGLSLAR-----LGFSVVAIDADVG   90 (340)
Q Consensus        46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~-----~g~~VlliD~D~~   90 (340)
                      ....+.+|+++ +..|+||||+|..|+..+..     .+++|.++|+|.-
T Consensus        18 ~~~~~~iI~I~-G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~   66 (252)
T 1uj2_A           18 NGGEPFLIGVS-GGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSF   66 (252)
T ss_dssp             ---CCEEEEEE-CSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGG
T ss_pred             cCCCcEEEEEE-CCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcc
Confidence            34556778877 77889999999999887653     2668999999854

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=95.84  E-value=0.023  Score=55.17  Aligned_cols=85  Identities=13%  Similarity=0.175  Sum_probs=68.3

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHH
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLD  243 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~  243 (340)
                      +|.+=|||||+..  ......+|..+|.+++|+++...-..++..+.+.+...+++. .+++|+.++...  .-.....+
T Consensus        99 ~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~-i~fINK~Dr~~a--d~~~~~~~  175 (548)
T 3vqt_A           99 DRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPV-MTFVNKMDREAL--HPLDVMAD  175 (548)
T ss_dssp             TEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCE-EEEEECTTSCCC--CHHHHHHH
T ss_pred             CEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCce-EEEEecccchhc--chhHhhhh
Confidence            5888999999955  667788999999999999998888888889999999888864 589999998542  22234678


Q ss_pred             HHHHhCCcee
Q 047623          244 IQEMLGLALL  253 (340)
Q Consensus       244 i~~~~g~~v~  253 (340)
                      +.+.++..+.
T Consensus       176 i~~~l~~~~~  185 (548)
T 3vqt_A          176 IEQHLQIECA  185 (548)
T ss_dssp             HHHHHTSEEE
T ss_pred             hhhhcCCceE
Confidence            8888886654

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=95.83  E-value=0.011  Score=53.54  Aligned_cols=40  Identities=20%  Similarity=0.187  Sum_probs=32.4

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHC------CCcEEEEecCCC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARL------GFSVVAIDADVG   90 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~------g~~VlliD~D~~   90 (340)
                      +.++.+. +..|+|||+++.++|...+..      |.+|++||++..
T Consensus       107 G~i~~i~-G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~  152 (324)
T 2z43_A          107 RTMTEFF-GEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT  152 (324)
T ss_dssp             TSEEEEE-ESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred             CcEEEEE-CCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence            4555555 778999999999999987654      789999999864

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.79  E-value=0.1  Score=42.57  Aligned_cols=66  Identities=15%  Similarity=0.069  Sum_probs=44.5

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC----CCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG----IRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~----~~~~~vviN~~~~~  231 (340)
                      .+.+.|+|+|+..  .......+..+|.++++...+ ..++..+....+.+....    ...+.+|+|+.+-.
T Consensus        55 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~  127 (199)
T 2gf0_A           55 VCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDET  127 (199)
T ss_dssp             EEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCS
T ss_pred             EEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCC
Confidence            3678999999844  334455667899999988875 445566555555554321    23578999999864

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=95.75  E-value=0.0087  Score=48.85  Aligned_cols=41  Identities=20%  Similarity=0.238  Sum_probs=32.8

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      |+++++|+| ..|+||||++..|+..+...|+++..|..|..
T Consensus         1 m~~~v~IvG-~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~   41 (171)
T 2f1r_A            1 MSLILSIVG-TSDSGKTTLITRMMPILRERGLRVAVVKRHAH   41 (171)
T ss_dssp             --CEEEEEE-SCHHHHHHHHHHHHHHHHHTTCCEEEEEC---
T ss_pred             CceEEEEEC-CCCCCHHHHHHHHHHHhhhcCCceEEEEEcCc
Confidence            467899997 77999999999999999999988888887754

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=95.74  E-value=0.014  Score=48.53  Aligned_cols=40  Identities=28%  Similarity=0.290  Sum_probs=32.8

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      ..+.++.++ ++| .||||.|..+|...+.+|++|+++-+..
T Consensus        27 ~~g~i~v~t-G~G-kGKTTaA~GlalRA~g~G~rV~~vQF~K   66 (196)
T 1g5t_A           27 ERGIIIVFT-GNG-KGKTTAAFGTAARAVGHGKNVGVVQFIK   66 (196)
T ss_dssp             CCCCEEEEE-SSS-SCHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             cCceEEEEC-CCC-CCHHHHHHHHHHHHHHCCCeEEEEEeeC
Confidence            344555554 565 9999999999999999999999997775

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=95.74  E-value=0.075  Score=45.34  Aligned_cols=64  Identities=13%  Similarity=0.262  Sum_probs=35.1

Q ss_pred             CCEEEEcCCCCCCH---------HHHHHH----hcCCeEEEEeCCCh---hhHHHHHHHHHHHHhcCCCceEEEEecccC
Q 047623          167 PDFILIDCPAGIDA---------GFITAI----TPANEAVLVTTPDI---TSLRDADRVTGLLECDGIRDIKMVVNRVRT  230 (340)
Q Consensus       167 ~D~VIiD~~~~~~~---------~~~~~l----~~ad~viiv~~~~~---~s~~~~~~~~~~l~~~~~~~~~vviN~~~~  230 (340)
                      ..+.|+|+|+..+.         .....+    ..+|.+++|+..+.   .....+..+.+.+.......+.+|+|+.+.
T Consensus        78 ~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~  157 (239)
T 3lxx_A           78 TELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRKDD  157 (239)
T ss_dssp             EEEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGG
T ss_pred             ceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCCcc
Confidence            56789999884421         112222    23588888887532   223333333333332222367899999875

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=95.71  E-value=0.012  Score=52.85  Aligned_cols=38  Identities=16%  Similarity=0.198  Sum_probs=33.5

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      +.+..+..|+||||++.++|..++..|.+|+++.+...
T Consensus        70 l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s  107 (315)
T 3bh0_A           70 FVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMG  107 (315)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCC
Confidence            45555899999999999999999998999999999855

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.71  E-value=0.013  Score=50.12  Aligned_cols=41  Identities=20%  Similarity=0.259  Sum_probs=35.0

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      .+.++.+. +..|+||||++.++|..+++.|.+|++++.+..
T Consensus        22 ~G~~~~i~-G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~   62 (247)
T 2dr3_A           22 ERNVVLLS-GGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH   62 (247)
T ss_dssp             TTCEEEEE-ECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred             CCcEEEEE-CCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC
Confidence            34566666 668999999999999999999999999999865

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=95.69  E-value=0.19  Score=49.91  Aligned_cols=80  Identities=19%  Similarity=0.243  Sum_probs=55.8

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHH
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLD  243 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~  243 (340)
                      .+.+.|+|+|+...  ......+..+|.+++++++.........++++.+...+.+ +.+++|+.+.. .  ......++
T Consensus        73 ~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip-~ilv~NKiD~~-~--~~~~~~~~  148 (665)
T 2dy1_A           73 GHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLP-RMVVVTKLDKG-G--DYYALLED  148 (665)
T ss_dssp             TEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCC-EEEEEECGGGC-C--CHHHHHHH
T ss_pred             CEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCC-EEEEecCCchh-h--hHHHHHHH
Confidence            47789999998654  4456678889999999987655445566677777666654 45789999865 2  22233556


Q ss_pred             HHHHhC
Q 047623          244 IQEMLG  249 (340)
Q Consensus       244 i~~~~g  249 (340)
                      +.+.++
T Consensus       149 l~~~l~  154 (665)
T 2dy1_A          149 LRSTLG  154 (665)
T ss_dssp             HHHHHC
T ss_pred             HHHHhC
Confidence            777777

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=95.65  E-value=0.0074  Score=53.71  Aligned_cols=41  Identities=24%  Similarity=0.404  Sum_probs=32.5

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGL   91 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~   91 (340)
                      ..+|+++ +..|+||||+|..|+..+...|.++.+||+|.-.
T Consensus         5 ~~iIgIt-G~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~   45 (290)
T 1a7j_A            5 HPIISVT-GSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH   45 (290)
T ss_dssp             SCEEEEE-SCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred             ceEEEEE-CCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence            4578888 5778999999999999988778899999999754

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=95.64  E-value=0.017  Score=47.06  Aligned_cols=40  Identities=30%  Similarity=0.362  Sum_probs=33.5

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      .+.+|+++ +-.|+||||++..|+..+...|.++..+|.|.
T Consensus         4 ~g~~i~l~-G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~   43 (179)
T 2pez_A            4 RGCTVWLT-GLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN   43 (179)
T ss_dssp             CCEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred             CCcEEEEE-CCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence            45677777 67889999999999999988899998888664

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=95.63  E-value=0.014  Score=49.16  Aligned_cols=40  Identities=25%  Similarity=0.151  Sum_probs=33.4

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      ..+.|+++ +.+|+||||+..+|+..+... +++.+++.|+.
T Consensus        29 ~~~~i~i~-G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~d~~   68 (221)
T 2wsm_A           29 GTVAVNIM-GAIGSGKTLLIERTIERIGNE-VKIGAMLGDVV   68 (221)
T ss_dssp             TCEEEEEE-ECTTSCHHHHHHHHHHHHTTT-SCEEEEECSCC
T ss_pred             CceEEEEE-cCCCCCHHHHHHHHHHHhccC-CeEEEEecCCC
Confidence            45677777 588999999999999988655 79999999875

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=95.60  E-value=0.062  Score=52.66  Aligned_cols=66  Identities=17%  Similarity=0.124  Sum_probs=44.9

Q ss_pred             CCCEEEEcCCCCCCH--HHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCc
Q 047623          166 SPDFILIDCPAGIDA--GFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDM  232 (340)
Q Consensus       166 ~~D~VIiD~~~~~~~--~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~  232 (340)
                      .|.+.|+|||+..+.  .....+..+|.+++|++...............+...+.+ +.+++|+.+...
T Consensus        72 ~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ip-iIvviNKiDl~~  139 (600)
T 2ywe_A           72 TYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLV-IIPVINKIDLPS  139 (600)
T ss_dssp             EEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCE-EEEEEECTTSTT
T ss_pred             eEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCC-EEEEEeccCccc
Confidence            378889999997643  345667899999999988654333333333334444554 779999998643

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=95.50  E-value=0.021  Score=47.47  Aligned_cols=41  Identities=27%  Similarity=0.339  Sum_probs=34.1

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      +.+.+|++. +-.|+||||++..||..+...|..+..+|.|.
T Consensus        23 ~~g~~i~l~-G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~   63 (200)
T 3uie_A           23 QKGCVIWVT-GLSGSGKSTLACALNQMLYQKGKLCYILDGDN   63 (200)
T ss_dssp             SCCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred             CCCeEEEEE-CCCCCCHHHHHHHHHHHHHhcCceEEEecCch
Confidence            456788877 77789999999999999987788777888764

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=95.45  E-value=0.017  Score=52.52  Aligned_cols=38  Identities=24%  Similarity=0.281  Sum_probs=33.5

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      +.+..+..|+||||++.++|..++..|.+|+++.+...
T Consensus        48 LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms   85 (338)
T 4a1f_A           48 LVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMS   85 (338)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence            44445889999999999999999999999999999865

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=95.41  E-value=0.022  Score=54.01  Aligned_cols=65  Identities=17%  Similarity=0.147  Sum_probs=39.3

Q ss_pred             CCCEEEEcCCCCCC----------HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGID----------AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~----------~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      ...+.|+|||+...          .....++..+|.++++++....-...-..+.+.++..+ ..+.+|+|+++..
T Consensus        70 ~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~-~pvilV~NK~D~~  144 (456)
T 4dcu_A           70 NYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTK-KPVVLAVNKLDNT  144 (456)
T ss_dssp             SSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCC-SCEEEEEECC---
T ss_pred             CceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcC-CCEEEEEECccch
Confidence            36778999988321          12334567799999998875432333345666665533 4577899999753

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=95.40  E-value=0.16  Score=41.17  Aligned_cols=61  Identities=10%  Similarity=-0.105  Sum_probs=43.5

Q ss_pred             CCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC---CCceEEEEecccC
Q 047623          167 PDFILIDCPAGIDAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG---IRDIKMVVNRVRT  230 (340)
Q Consensus       167 ~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~---~~~~~vviN~~~~  230 (340)
                      +.+.|+|+++.....   .+..+|.++++...+ ..++..+...++.+....   ...+.+|.|+.+-
T Consensus        67 ~~l~i~Dt~G~~~~~---~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl  131 (184)
T 3ihw_A           67 YLLLIRDEGGPPELQ---FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAI  131 (184)
T ss_dssp             EEEEEEECSSSCCHH---HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTC
T ss_pred             EEEEEEECCCChhhh---eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence            667889998865433   567799988887764 556777777777776542   2356788999875

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=95.40  E-value=0.019  Score=48.53  Aligned_cols=41  Identities=20%  Similarity=0.209  Sum_probs=34.4

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      .+.++++. +..|+||||++..++..++..|.+|++++.+..
T Consensus        22 ~G~~~~i~-G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~   62 (235)
T 2w0m_A           22 QGFFIALT-GEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES   62 (235)
T ss_dssp             TTCEEEEE-CSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC
T ss_pred             CCCEEEEE-cCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC
Confidence            34577776 778999999999999988887889999998764

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=95.38  E-value=0.015  Score=54.93  Aligned_cols=39  Identities=15%  Similarity=0.175  Sum_probs=34.4

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCC
Q 047623           53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGL   91 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~   91 (340)
                      +.+.++..|+||||++.++|..++..|.+|+++.+....
T Consensus       199 liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~  237 (444)
T 3bgw_A          199 FVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGK  237 (444)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCT
T ss_pred             EEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCH
Confidence            455558899999999999999999989999999999763

>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A

Probab=95.27  E-value=0.022  Score=55.00  Aligned_cols=42  Identities=31%  Similarity=0.399  Sum_probs=39.2

Q ss_pred             CCCEEEEEE-cCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           48 ETPRVVVIT-SGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        48 ~~~~iI~v~-s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      .|+|.|.|+ |.-+++||+.+|+.|+..|.++|++|..+.+||
T Consensus        10 ~~~~~i~v~gg~~s~~gk~~~~~~~~~~l~~~g~~v~~~k~~p   52 (550)
T 1vco_A           10 RPRKYVFITGGVVSSLGKGILTSSLGALLRARGYRVTAIKIDP   52 (550)
T ss_dssp             CCCEEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEEC
T ss_pred             cceeEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeEeeccc
Confidence            367899999 999999999999999999999999999999985

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=95.12  E-value=0.03  Score=49.95  Aligned_cols=64  Identities=17%  Similarity=0.152  Sum_probs=36.8

Q ss_pred             CCEEEEcCCCCC-CHH----------HHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCc
Q 047623          167 PDFILIDCPAGI-DAG----------FITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDM  232 (340)
Q Consensus       167 ~D~VIiD~~~~~-~~~----------~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~  232 (340)
                      +.++++|||+.. ...          ....+..+|.++++++....+ .....+.+.+...+ ....+++|+.+...
T Consensus        56 ~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~~~-~~~~~i~~~l~~~~-~P~ilvlNK~D~~~  130 (301)
T 1ega_A           56 YQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWT-PDDEMVLNKLREGK-APVILAVNKVDNVQ  130 (301)
T ss_dssp             EEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCCC-HHHHHHHHHHHSSS-SCEEEEEESTTTCC
T ss_pred             eeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCCCC-HHHHHHHHHHHhcC-CCEEEEEECcccCc
Confidence            567888988754 111          112345678888877764322 12234455555433 34668889998753

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=95.05  E-value=0.12  Score=51.54  Aligned_cols=64  Identities=11%  Similarity=0.182  Sum_probs=42.2

Q ss_pred             CCEEEEcCCCCC-----CHHHHHHHhcCCeEEEEeCCChh-hHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          167 PDFILIDCPAGI-----DAGFITAITPANEAVLVTTPDIT-SLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~-----~~~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      ++++|+|||+..     ...+...+..||.+++|+..+.. +......+.+.+...+. .+.+|+|+++..
T Consensus       174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~-~iiiVlNK~Dl~  243 (695)
T 2j69_A          174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGL-TVFFLVNAWDQV  243 (695)
T ss_dssp             TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCC-CEEEEEECGGGG
T ss_pred             CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCC-CEEEEEECcccc
Confidence            689999999832     23345667889999999987543 33333333344444343 488999999853

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=95.05  E-value=0.027  Score=47.49  Aligned_cols=40  Identities=23%  Similarity=0.186  Sum_probs=32.6

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      ....|+++ +.+|+||||+..+++..+... .++..|+.|+.
T Consensus        37 ~~~~i~iv-G~~gvGKTtl~~~l~~~~~~~-~~~~~i~~d~~   76 (226)
T 2hf9_A           37 GVVAFDFM-GAIGSGKTLLIEKLIDNLKDK-YKIACIAGDVI   76 (226)
T ss_dssp             TCEEEEEE-ESTTSSHHHHHHHHHHHHTTT-CCEEEEEEETT
T ss_pred             CCeEEEEE-cCCCCCHHHHHHHHHHHhccC-CeEEEEECCCC
Confidence            44677777 559999999999999887654 78999998875

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=95.00  E-value=0.024  Score=47.53  Aligned_cols=40  Identities=20%  Similarity=0.276  Sum_probs=33.4

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEecC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLA-RLGFSVVAIDAD   88 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la-~~g~~VlliD~D   88 (340)
                      .++++|.+. +-.|+||||++..|+..+. ..|.++..+|.|
T Consensus        23 ~~~~~i~~~-G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d   63 (211)
T 1m7g_A           23 QRGLTIWLT-GLSASGKSTLAVELEHQLVRDRRVHAYRLDGD   63 (211)
T ss_dssp             SSCEEEEEE-CSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred             CCCCEEEEE-CCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence            445677777 6689999999999999998 779889988855

>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*

Probab=94.95  E-value=0.031  Score=53.90  Aligned_cols=40  Identities=20%  Similarity=0.302  Sum_probs=37.6

Q ss_pred             CEEEEEE-cCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           50 PRVVVIT-SGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        50 ~~iI~v~-s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      +|.|.|+ |.-+++|||++++.|+..|+++|++|..+.+||
T Consensus         3 ~~~i~v~gg~~s~~gk~~~~~~l~~~l~~~g~~v~~~k~~p   43 (545)
T 1s1m_A            3 TNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDP   43 (545)
T ss_dssp             CEEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEEC
T ss_pred             ceEEEEeCCcccCcchHHHHHHHHHHHHhCCceeeeeeccc
Confidence            4788999 999999999999999999999999999999985

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=94.93  E-value=0.19  Score=39.25  Aligned_cols=66  Identities=11%  Similarity=-0.007  Sum_probs=46.9

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD---GIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~  231 (340)
                      .+++.++|+|+..  .......+..+|.++++...+ ..+...+...++.+...   ....+.+|+|+.+..
T Consensus        50 ~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~  121 (166)
T 2ce2_X           50 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLA  121 (166)
T ss_dssp             EEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCS
T ss_pred             EEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhh
Confidence            3788999999954  455566778899998888775 45566666666665542   134678999999854

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=94.86  E-value=0.23  Score=40.33  Aligned_cols=66  Identities=11%  Similarity=0.093  Sum_probs=40.3

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHH----hcCCeEEEEeCCC--hhhHHHHHHHHHHHHh-c-----CCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGID--AGFITAI----TPANEAVLVTTPD--ITSLRDADRVTGLLEC-D-----GIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l----~~ad~viiv~~~~--~~s~~~~~~~~~~l~~-~-----~~~~~~vviN~~~~~  231 (340)
                      .+.+.|+|+|+...  ......+    ..+|.++++.+..  ..++......+..+.. .     ....+.+|+|+.+-.
T Consensus        90 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  169 (193)
T 2ged_A           90 GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELF  169 (193)
T ss_dssp             CTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTST
T ss_pred             CCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhc
Confidence            47788899988431  2222333    3489999988875  4556555544433321 1     234578999999864

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=94.77  E-value=0.035  Score=47.37  Aligned_cols=38  Identities=29%  Similarity=0.268  Sum_probs=31.1

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEecCCC
Q 047623           53 VVITSGKGGVGKTTTTANVGLSLA-RLGFSVVAIDADVG   90 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~la-~~g~~VlliD~D~~   90 (340)
                      +.+..+..|+|||++|.++|...+ +.|.+|++++++..
T Consensus        32 l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~   70 (251)
T 2zts_A           32 TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER   70 (251)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCC
Confidence            445558899999999999998755 55889999998865

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=94.65  E-value=0.12  Score=48.58  Aligned_cols=63  Identities=17%  Similarity=0.235  Sum_probs=38.4

Q ss_pred             CCEEEEcCCCCCC-----------HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccC
Q 047623          167 PDFILIDCPAGID-----------AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRT  230 (340)
Q Consensus       167 ~D~VIiD~~~~~~-----------~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~  230 (340)
                      ..+.|+|||+...           .....++..||.+++|++....--..-..+.+.++..+ ..+.+|+|+++.
T Consensus        49 ~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~-~p~ilv~NK~D~  122 (439)
T 1mky_A           49 KTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKST-VDTILVANKAEN  122 (439)
T ss_dssp             EEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHT-CCEEEEEESCCS
T ss_pred             eEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcC-CCEEEEEeCCCC
Confidence            4568899998432           12344677899999999864321111123444455433 346799999875

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=94.57  E-value=0.029  Score=45.62  Aligned_cols=37  Identities=22%  Similarity=0.268  Sum_probs=30.0

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEec
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLA-RLGFSVVAIDA   87 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la-~~g~~VlliD~   87 (340)
                      ++.+.++ +..|+||||++..++..+. ..|.++..+++
T Consensus        38 g~~~~l~-G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~   75 (180)
T 3ec2_A           38 GKGLTFV-GSPGVGKTHLAVATLKAIYEKKGIRGYFFDT   75 (180)
T ss_dssp             CCEEEEC-CSSSSSHHHHHHHHHHHHHHHSCCCCCEEEH
T ss_pred             CCEEEEE-CCCCCCHHHHHHHHHHHHHHHcCCeEEEEEH
Confidence            5667666 7789999999999999998 77888777543

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=94.54  E-value=0.052  Score=51.06  Aligned_cols=64  Identities=17%  Similarity=0.144  Sum_probs=36.1

Q ss_pred             CCEEEEcCCCCCC----------HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          167 PDFILIDCPAGID----------AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~~----------~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      .++.|+|||+...          .....++..||.++++++....-...-..+.+.++..+ ..+.+|+|+++..
T Consensus        51 ~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~-~pvilv~NK~D~~  124 (436)
T 2hjg_A           51 YDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTK-KPVVLAVNKLDNT  124 (436)
T ss_dssp             SCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCC-SCEEEEEECCCC-
T ss_pred             ceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcC-CCEEEEEECccCc
Confidence            5678899988531          12234567899999998765321122234555555433 4678999999864

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=94.51  E-value=0.025  Score=46.20  Aligned_cols=37  Identities=32%  Similarity=0.412  Sum_probs=28.3

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      ++|++. +-.|+||||++..||..+...|.+.-.+|.|
T Consensus         4 ~~I~i~-G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~   40 (192)
T 1kht_A            4 KVVVVT-GVPGVGSTTSSQLAMDNLRKEGVNYKMVSFG   40 (192)
T ss_dssp             CEEEEE-CCTTSCHHHHHHHHHHHHHTTTCCCEEEEHH
T ss_pred             eEEEEE-CCCCCCHHHHHHHHHHHHHhcCcceEEEehH
Confidence            456665 7789999999999999998777555556543

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=94.49  E-value=0.04  Score=45.62  Aligned_cols=37  Identities=27%  Similarity=0.309  Sum_probs=31.1

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      +.+.++ +..|+|||+++..++..+.+.|.++..+++.
T Consensus        55 ~~~~l~-G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~   91 (202)
T 2w58_A           55 KGLYLH-GSFGVGKTYLLAAIANELAKRNVSSLIVYVP   91 (202)
T ss_dssp             CEEEEE-CSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred             CeEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence            456565 7789999999999999999889999888654

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.48  E-value=0.082  Score=44.10  Aligned_cols=66  Identities=11%  Similarity=0.090  Sum_probs=40.9

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhc----CCeEEEEeCCC--hhhHHHHHHHHHHHHhc------CCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGI--DAGFITAITP----ANEAVLVTTPD--ITSLRDADRVTGLLECD------GIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~----ad~viiv~~~~--~~s~~~~~~~~~~l~~~------~~~~~~vviN~~~~~  231 (340)
                      .+++.|+|+|+..  .......+..    +|.++++.+..  ..++......+..+...      ....+.+|.|+.+-.
T Consensus        54 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  133 (218)
T 1nrj_B           54 GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELF  133 (218)
T ss_dssp             GSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTST
T ss_pred             CceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhc
Confidence            4788999999854  2333444444    88888888775  24444444444333221      234578999999864

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=94.48  E-value=0.3  Score=39.42  Aligned_cols=64  Identities=8%  Similarity=0.059  Sum_probs=37.7

Q ss_pred             CCEEEEcCCCCC------------CHHHHHHHhc---CCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          167 PDFILIDCPAGI------------DAGFITAITP---ANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~------------~~~~~~~l~~---ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      ..++++|+|+-.            .......+..   +|.++++++...........+.+.+...+ ..+.+|+|+.+..
T Consensus        68 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~-~p~i~v~nK~Dl~  146 (195)
T 3pqc_A           68 SKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLN-IPFTIVLTKMDKV  146 (195)
T ss_dssp             TTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTT-CCEEEEEECGGGS
T ss_pred             CcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcC-CCEEEEEEChhcC
Confidence            567899998821            0111223333   38888888765433333345556665544 3577899999854

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=94.46  E-value=0.057  Score=44.10  Aligned_cols=34  Identities=26%  Similarity=0.365  Sum_probs=28.0

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEe
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAID   86 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD   86 (340)
                      +|+++ +-.|+||||++..|+..+...|..++-.|
T Consensus         2 ~I~l~-G~~GsGKsT~~~~L~~~l~~~g~~~i~~d   35 (195)
T 2pbr_A            2 LIAFE-GIDGSGKTTQAKKLYEYLKQKGYFVSLYR   35 (195)
T ss_dssp             EEEEE-CSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence            45666 67889999999999999988898886554

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=94.43  E-value=0.11  Score=57.42  Aligned_cols=40  Identities=38%  Similarity=0.369  Sum_probs=34.6

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      +.++.+. +..|+||||+|.++|..+++.|.+|+++|+...
T Consensus       383 G~lilI~-G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s  422 (2050)
T 3cmu_A          383 GRIVEIY-GPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA  422 (2050)
T ss_dssp             TSEEEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC
T ss_pred             CcEEEEE-eCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCC
Confidence            3455554 889999999999999999999999999999876

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=94.43  E-value=0.054  Score=47.92  Aligned_cols=42  Identities=21%  Similarity=0.252  Sum_probs=34.4

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEecCCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARL-GFSVVAIDADVG   90 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~-g~~VlliD~D~~   90 (340)
                      +.+.++++. +..|+||||++.++|..++.. |.+|++++.+..
T Consensus        33 ~~G~~~~i~-G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~   75 (296)
T 1cr0_A           33 RGGEVIMVT-SGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEES   75 (296)
T ss_dssp             CTTCEEEEE-ESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSC
T ss_pred             CCCeEEEEE-eCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCC
Confidence            344566666 778899999999999999876 889999988753

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=94.41  E-value=0.045  Score=51.64  Aligned_cols=38  Identities=18%  Similarity=0.223  Sum_probs=32.4

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEecCCC
Q 047623           53 VVITSGKGGVGKTTTTANVGLSLAR-LGFSVVAIDADVG   90 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~la~-~g~~VlliD~D~~   90 (340)
                      +.+..+..|+|||+++.++|...+. .|.+|+++++...
T Consensus       202 l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~  240 (444)
T 2q6t_A          202 LNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMP  240 (444)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence            4444588999999999999999997 4899999999854

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=94.40  E-value=0.04  Score=53.46  Aligned_cols=41  Identities=29%  Similarity=0.302  Sum_probs=34.7

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      +.+.+|.++ +..|+||||+|..|+..+...|.++.++|.|.
T Consensus       370 ~~~~~I~l~-G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~  410 (546)
T 2gks_A          370 KQGFCVWLT-GLPCAGKSTIAEILATMLQARGRKVTLLDGDV  410 (546)
T ss_dssp             GCCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEECHHH
T ss_pred             ccceEEEcc-CCCCCCHHHHHHHHHHHhhhcCCeEEEECchH
Confidence            445677776 67789999999999999999999999999773

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=94.33  E-value=0.055  Score=51.17  Aligned_cols=40  Identities=18%  Similarity=0.354  Sum_probs=33.5

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEecCCC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLAR-LGFSVVAIDADVG   90 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~-~g~~VlliD~D~~   90 (340)
                      +.++.+ .+..|+||||++.++|..++. .|.+|+++++...
T Consensus       203 G~liiI-~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s  243 (454)
T 2r6a_A          203 SDLIIV-AARPSVGKTAFALNIAQNVATKTNENVAIFSLEMS  243 (454)
T ss_dssp             TCEEEE-ECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSC
T ss_pred             CCEEEE-ECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            344444 488999999999999999986 6899999999865

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=94.31  E-value=0.14  Score=49.46  Aligned_cols=85  Identities=13%  Similarity=0.143  Sum_probs=61.4

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHH
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLD  243 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~  243 (340)
                      .+.+.|+|||+..  ...+...+..+|.+++|++...........+.+.+...+. .+.+|+|+.+....  ......++
T Consensus        81 ~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~i-PiivviNK~Dl~~~--~~~~~l~e  157 (528)
T 3tr5_A           81 DYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHT-PIMTFINKMDRDTR--PSIELLDE  157 (528)
T ss_dssp             TEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTC-CEEEEEECTTSCCS--CHHHHHHH
T ss_pred             CEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCC-CEEEEEeCCCCccc--cHHHHHHH
Confidence            4889999999954  4666778889999999999876555556666777766655 46789999987431  12233667


Q ss_pred             HHHHhCCcee
Q 047623          244 IQEMLGLALL  253 (340)
Q Consensus       244 i~~~~g~~v~  253 (340)
                      +++.++....
T Consensus       158 i~~~l~~~~~  167 (528)
T 3tr5_A          158 IESILRIHCA  167 (528)
T ss_dssp             HHHHHCCEEE
T ss_pred             HHHhhCCCce
Confidence            7888886544

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=94.28  E-value=0.21  Score=54.41  Aligned_cols=41  Identities=37%  Similarity=0.355  Sum_probs=35.4

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      .+.++.|. +..|+||||+|.++|...++.|.+|++||++..
T Consensus       382 ~G~lilI~-G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s  422 (1706)
T 3cmw_A          382 MGRIVEIY-GPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA  422 (1706)
T ss_dssp             TTSEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSC
T ss_pred             CCcEEEEE-eCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence            34455555 889999999999999999999999999999976

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=94.26  E-value=0.063  Score=44.70  Aligned_cols=36  Identities=19%  Similarity=0.314  Sum_probs=29.5

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEe
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAID   86 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD   86 (340)
                      +++|++. +-.|+||||++..|+..+...|.+|..++
T Consensus         9 ~~~I~l~-G~~GsGKsT~~~~L~~~l~~~~~~v~~~~   44 (215)
T 1nn5_A            9 GALIVLE-GVDRAGKSTQSRKLVEALCAAGHRAELLR   44 (215)
T ss_dssp             CCEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CcEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEee
Confidence            4577777 56789999999999999998899885543

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=94.26  E-value=0.07  Score=45.03  Aligned_cols=39  Identities=13%  Similarity=0.069  Sum_probs=32.9

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      .+.+.++ +..|+|||+++..++..+...|.++..++++.
T Consensus        52 ~~~~ll~-G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~   90 (242)
T 3bos_A           52 VQAIYLW-GPVKSGRTHLIHAACARANELERRSFYIPLGI   90 (242)
T ss_dssp             CSEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred             CCeEEEE-CCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence            4566666 67799999999999999999999999998754

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=94.25  E-value=0.18  Score=40.26  Aligned_cols=66  Identities=15%  Similarity=0.071  Sum_probs=47.4

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC--CCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG--IRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~~  231 (340)
                      .+.+.|+|+|+..  .......+..+|.++++...+ ..++..+...++.+....  ...+.+|.|+.+..
T Consensus        60 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~  130 (181)
T 2efe_B           60 TVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLL  130 (181)
T ss_dssp             EEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred             EEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence            3688999999854  333455677899999998874 456677777777776543  23577899998863

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=94.20  E-value=0.23  Score=39.55  Aligned_cols=65  Identities=12%  Similarity=0.050  Sum_probs=46.3

Q ss_pred             CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc-----CCCceEEEEecccCC
Q 047623          167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD-----GIRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~-----~~~~~~vviN~~~~~  231 (340)
                      +.+.|+|+|+..  .......+..+|.++++.+.+ ..++..+...++.+...     +...+.+|.|+.+-.
T Consensus        56 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~  128 (178)
T 2hxs_A           56 VTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLE  128 (178)
T ss_dssp             EEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGG
T ss_pred             EEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccc
Confidence            788999999854  344566778899999999875 44666666666666542     344478899999864

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=94.17  E-value=0.031  Score=53.60  Aligned_cols=38  Identities=16%  Similarity=0.140  Sum_probs=33.3

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEecCCC
Q 047623           53 VVITSGKGGVGKTTTTANVGLSLARL-GFSVVAIDADVG   90 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~la~~-g~~VlliD~D~~   90 (340)
                      +.+..+..|+|||+++.++|..++.. |.+|+++++...
T Consensus       244 l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s  282 (503)
T 1q57_A          244 VIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES  282 (503)
T ss_dssp             EEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC
T ss_pred             EEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC
Confidence            44555889999999999999999987 999999999875

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=94.08  E-value=0.092  Score=43.80  Aligned_cols=43  Identities=21%  Similarity=0.319  Sum_probs=34.8

Q ss_pred             CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      .+.+.+|++. +..|+||||++..|+..+...|.++..|..|..
T Consensus        19 ~~~g~~v~I~-G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~   61 (208)
T 3c8u_A           19 QPGRQLVALS-GAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF   61 (208)
T ss_dssp             CCSCEEEEEE-CCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred             CCCCeEEEEE-CCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence            3556788888 677899999999999999876777888887753

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=94.00  E-value=1.6  Score=34.91  Aligned_cols=61  Identities=16%  Similarity=0.137  Sum_probs=38.2

Q ss_pred             CCEEEEcCCCCCCH--------HHHHHHh--cCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccC
Q 047623          167 PDFILIDCPAGIDA--------GFITAIT--PANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRT  230 (340)
Q Consensus       167 ~D~VIiD~~~~~~~--------~~~~~l~--~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~  230 (340)
                      +.+.|+|+|+....        .....+.  .+|.++.+++..  +.......++.+...+. .+.+|.|+.+.
T Consensus        54 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~--~~~~~~~~~~~~~~~~~-piilv~nK~Dl  124 (188)
T 2wjg_A           54 EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDAT--ALERNLYLTLQLMEMGA-NLLLALNKMDL  124 (188)
T ss_dssp             EEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGG--GHHHHHHHHHHHHTTTC-CEEEEEECHHH
T ss_pred             cEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecch--hHHHHHHHHHHHHhcCC-CEEEEEEhhhc
Confidence            56788899885421        2233333  489888887654  45555556666655433 46788999874

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=93.96  E-value=0.12  Score=42.76  Aligned_cols=38  Identities=16%  Similarity=0.006  Sum_probs=32.1

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEe
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAID   86 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD   86 (340)
                      ..++++.++ +.-|+||||.+..+|..+..+|++|+++-
T Consensus         6 ~~g~i~v~~-G~mgsGKTT~ll~~a~r~~~~g~kV~v~k   43 (191)
T 1xx6_A            6 DHGWVEVIV-GPMYSGKSEELIRRIRRAKIAKQKIQVFK   43 (191)
T ss_dssp             TCCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCEEEEEE-CCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence            345666666 55688999999999999999999999996

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=93.93  E-value=0.096  Score=54.92  Aligned_cols=66  Identities=20%  Similarity=0.279  Sum_probs=47.6

Q ss_pred             CCCEEEEcCCCCCCH--HHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGIDA--GFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~~--~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      .+.+.|+|||+....  .+...+..+|.+|+|+..+......+.+.+..+...+.+.+.+++|+.+..
T Consensus       358 ~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv  425 (1289)
T 3avx_A          358 TRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMV  425 (1289)
T ss_dssp             SCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTC
T ss_pred             CEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccc
Confidence            478999999995432  223345679999999988765444555566666666777788999999864

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=93.88  E-value=0.096  Score=43.49  Aligned_cols=37  Identities=19%  Similarity=0.178  Sum_probs=29.6

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEe
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAID   86 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD   86 (340)
                      ++++|+++ +-.|+||||++..|+..+...+.++.++.
T Consensus         9 ~~~~I~l~-G~~GsGKST~~~~L~~~l~~~~~~~~~~~   45 (212)
T 2wwf_A            9 KGKFIVFE-GLDRSGKSTQSKLLVEYLKNNNVEVKHLY   45 (212)
T ss_dssp             CSCEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCEEEEE-cCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence            34677777 56689999999999999998888885544

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=93.85  E-value=0.042  Score=45.57  Aligned_cols=36  Identities=25%  Similarity=0.454  Sum_probs=26.5

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      +++++|++. +-.|+||||++..|+..+   |  ..++|.|.
T Consensus        16 ~~~~~I~l~-G~~GsGKSTla~~L~~~l---g--~~~i~~d~   51 (202)
T 3t61_A           16 RFPGSIVVM-GVSGSGKSSVGEAIAEAC---G--YPFIEGDA   51 (202)
T ss_dssp             CCSSCEEEE-CSTTSCHHHHHHHHHHHH---T--CCEEEGGG
T ss_pred             CCCeEEEEE-CCCCCCHHHHHHHHHHHh---C--CEEEeCCc
Confidence            445677766 778899999999998876   3  34566664

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=93.83  E-value=0.14  Score=41.61  Aligned_cols=66  Identities=9%  Similarity=-0.017  Sum_probs=47.4

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC--CCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG--IRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~~  231 (340)
                      .+.+.|+|+|+..  .......+..+|.++++...+ ..+...+...++.+....  ...+.+|+|+.+-.
T Consensus        70 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~  140 (189)
T 2gf9_A           70 RIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLE  140 (189)
T ss_dssp             EEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred             EEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccc
Confidence            3678999999843  333455677899999998874 556777777777776542  34678999999864

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=93.83  E-value=0.071  Score=42.18  Aligned_cols=39  Identities=21%  Similarity=0.222  Sum_probs=32.0

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      .+..+.++ +..|+||||++..++..+...|.++..++..
T Consensus        35 ~g~~~~l~-G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~   73 (149)
T 2kjq_A           35 HGQFIYVW-GEEGAGKSHLLQAWVAQALEAGKNAAYIDAA   73 (149)
T ss_dssp             CCSEEEEE-SSSTTTTCHHHHHHHHHHHTTTCCEEEEETT
T ss_pred             CCCEEEEE-CCCCCCHHHHHHHHHHHHHhcCCcEEEEcHH
Confidence            34567776 6789999999999999998888888888764

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=93.76  E-value=0.044  Score=44.30  Aligned_cols=34  Identities=24%  Similarity=0.303  Sum_probs=24.0

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      ++| +.++-.|+||||++..||..+   +.....+|.|
T Consensus         4 ~~i-~l~G~~GsGKST~a~~La~~l---~~~~~~~~~D   37 (178)
T 1qhx_A            4 RMI-ILNGGSSAGKSGIVRCLQSVL---PEPWLAFGVD   37 (178)
T ss_dssp             CEE-EEECCTTSSHHHHHHHHHHHS---SSCEEEEEHH
T ss_pred             eEE-EEECCCCCCHHHHHHHHHHhc---CCCeEEeccc
Confidence            444 445778999999999988765   3455555565

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=93.74  E-value=0.36  Score=38.25  Aligned_cols=66  Identities=11%  Similarity=-0.036  Sum_probs=47.2

Q ss_pred             CCCEEEEcCCCC--CCHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC--CCceEEEEecccCC
Q 047623          166 SPDFILIDCPAG--IDAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG--IRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~--~~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~~  231 (340)
                      .+.+.|+|+|+.  ........+..+|.++++...+ ..+...+...++.+....  ...+.+|.|+.+-.
T Consensus        63 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  133 (179)
T 1z0f_A           63 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE  133 (179)
T ss_dssp             EEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred             EEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence            367899999984  3455667788899999998875 455666666666665432  24578999998864

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=93.71  E-value=0.15  Score=41.54  Aligned_cols=66  Identities=14%  Similarity=0.045  Sum_probs=47.7

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC--CCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG--IRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~~  231 (340)
                      .+.+.|+|+|+..  .......+..+|.++++...+ ..+...+...++.+....  ...+.+|.|+.+-.
T Consensus        71 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~  141 (192)
T 2fg5_A           71 LHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLS  141 (192)
T ss_dssp             EEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred             EEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccc
Confidence            3788999999853  334456678899999998874 456677777777776543  34677899999863

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=93.69  E-value=0.039  Score=44.93  Aligned_cols=34  Identities=21%  Similarity=0.213  Sum_probs=24.0

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      +++.|.++ +-.|+||||++..||..+   |..  ++|.|
T Consensus         4 ~~~~i~l~-G~~GsGKst~a~~La~~l---~~~--~i~~d   37 (185)
T 3trf_A            4 NLTNIYLI-GLMGAGKTSVGSQLAKLT---KRI--LYDSD   37 (185)
T ss_dssp             -CCEEEEE-CSTTSSHHHHHHHHHHHH---CCC--EEEHH
T ss_pred             CCCEEEEE-CCCCCCHHHHHHHHHHHh---CCC--EEECh
Confidence            35667766 558999999999998876   333  45555

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=93.66  E-value=0.079  Score=52.08  Aligned_cols=40  Identities=30%  Similarity=0.362  Sum_probs=33.9

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      ++.+|.++ +-.|+||||+|..|+..|.++|.++..+|.|.
T Consensus        51 ~g~lIvLt-GlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~   90 (630)
T 1x6v_B           51 RGCTVWLT-GLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN   90 (630)
T ss_dssp             CCEEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEESHHH
T ss_pred             CCCEEEEE-eCCCCCHHHHHHHHHHHHHhcCCeEEEechHH
Confidence            45666666 67899999999999999999999999888664

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=93.64  E-value=0.1  Score=49.05  Aligned_cols=65  Identities=18%  Similarity=0.360  Sum_probs=48.6

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhH-------HHHHHHHHHHHhcCCCceEEEEecccC
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSL-------RDADRVTGLLECDGIRDIKMVVNRVRT  230 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~~vviN~~~~  230 (340)
                      ++.++|+|||+...  ..+...+..||.+++++..+....       ....+.+..+...+.+.+.+++|+.+.
T Consensus        94 ~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl  167 (439)
T 3j2k_7           94 KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDD  167 (439)
T ss_pred             CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCC
Confidence            57899999999643  233445678999999999876543       356666666777777778899999986

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=93.60  E-value=0.09  Score=45.41  Aligned_cols=22  Identities=23%  Similarity=0.460  Sum_probs=16.9

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHH
Q 047623           50 PRVVVITSGKGGVGKTTTTANVG   72 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA   72 (340)
                      ...|+++ +..|+||||+.-.|.
T Consensus        22 ~~~I~lv-G~~g~GKStl~n~l~   43 (260)
T 2xtp_A           22 ELRIILV-GKTGTGKSAAGNSIL   43 (260)
T ss_dssp             CEEEEEE-ECTTSCHHHHHHHHH
T ss_pred             ceEEEEE-CCCCCCHHHHHHHHh
Confidence            4556666 589999999987764

>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0

Probab=93.52  E-value=0.11  Score=48.57  Aligned_cols=52  Identities=31%  Similarity=0.476  Sum_probs=42.7

Q ss_pred             CCCCEEEEEEcC---CCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCc
Q 047623           47 GETPRVVVITSG---KGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLE  101 (340)
Q Consensus        47 ~~~~~iI~v~s~---kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~  101 (340)
                      ++.+|.|.|++-   .-|.||||++..|+..|.+.|+++.+.   .+.|++.-.||++
T Consensus        40 ~~~GklIlVTaItPTPaGEGKtTttiGL~~aL~~lgk~~~~~---lRePSlGP~FGiK   94 (543)
T 3do6_A           40 HEDGKLILVTAVTPTPAGEGKTTTSIGLSMSLNRIGKKSIVT---LREPSLGPTLGLK   94 (543)
T ss_dssp             SCCCEEEEEEESSCCTTCCCHHHHHHHHHHHHHHTTCCEEEE---ECCCCHHHHHHSC
T ss_pred             CCCCeEEEEEecCCCCCCCCccchHHHHHHHHHhcCCeeEEE---EecCCCCCcCCcc
Confidence            356888888765   459999999999999999999999765   4448888888876

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=93.50  E-value=0.29  Score=39.68  Aligned_cols=112  Identities=12%  Similarity=0.049  Sum_probs=67.1

Q ss_pred             CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC--CCceEEEEecccCCcccccccccH
Q 047623          167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG--IRDIKMVVNRVRTDMIKGEDMMSV  241 (340)
Q Consensus       167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~~~~~~~~~~~~  241 (340)
                      +.+.|+|+|+..  .......+..+|.++++...+ ..++..+...++.+....  ...+.+|.|+.+-...........
T Consensus        65 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~  144 (196)
T 3tkl_A           65 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTA  144 (196)
T ss_dssp             EEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHH
T ss_pred             EEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHH
Confidence            678999999853  444566778899999998865 456666667777666542  235778899998543211121223


Q ss_pred             HHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCC--CHHHHHHHHHHHHHHhcccc
Q 047623          242 LDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPP--TLAGLAFEQAAWRLVEQDSM  298 (340)
Q Consensus       242 ~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~--s~~~~~~~~la~~i~~~~~~  298 (340)
                      ..+.+.++.+                    ++....+  ......+..|++.+..+...
T Consensus       145 ~~~~~~~~~~--------------------~~~~Sa~~g~gv~~l~~~l~~~i~~~~~~  183 (196)
T 3tkl_A          145 KEFADSLGIP--------------------FLETSAKNATNVEQSFMTMAAEIKKRMGP  183 (196)
T ss_dssp             HHHHHHTTCC--------------------EEEECTTTCTTHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHcCCc--------------------EEEEeCCCCCCHHHHHHHHHHHHHHHhcc
Confidence            3444444433                    3333222  23556667777777766543

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=93.47  E-value=0.085  Score=51.45  Aligned_cols=42  Identities=21%  Similarity=0.260  Sum_probs=34.6

Q ss_pred             CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCC-CcEEEEecCC
Q 047623           47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLG-FSVVAIDADV   89 (340)
Q Consensus        47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g-~~VlliD~D~   89 (340)
                      .+.+.+|.++ +-.|+||||+|..|+..|..+| .++.++|.|.
T Consensus       393 gq~~~~I~l~-GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~  435 (573)
T 1m8p_A          393 ATQGFTIFLT-GYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT  435 (573)
T ss_dssp             TTCCEEEEEE-CSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred             cccceEEEee-cCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence            4556677777 6677999999999999999888 8999998764

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=93.44  E-value=0.28  Score=38.47  Aligned_cols=66  Identities=15%  Similarity=0.027  Sum_probs=46.0

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcCC--CceEEEEecccCC
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDGI--RDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~~--~~~~vviN~~~~~  231 (340)
                      .+.+.|+|+|+..  .......+..+|.++++...+ ..++..+...++.+.....  ..+.+|.|+.+-.
T Consensus        54 ~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~  124 (170)
T 1r2q_A           54 TVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA  124 (170)
T ss_dssp             EEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred             EEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCc
Confidence            3778999999854  334456678899999998875 4566777777766665432  2455677999853

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=93.41  E-value=0.14  Score=41.61  Aligned_cols=66  Identities=9%  Similarity=-0.001  Sum_probs=47.9

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC--CCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG--IRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~~  231 (340)
                      .+.+.|+|+|+..  .......+..+|.++++...+ ..++..+..+++.+....  ...+.+|.|+.+-.
T Consensus        71 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~  141 (191)
T 3dz8_A           71 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDME  141 (191)
T ss_dssp             TEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred             EEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence            4778999998832  334456678899999998875 566777777777776643  24577889999853

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=93.38  E-value=0.075  Score=43.29  Aligned_cols=36  Identities=36%  Similarity=0.507  Sum_probs=26.4

Q ss_pred             CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      ..|+++|+++ +-.|+||||++..|+..+   |  ...+|.|
T Consensus         3 ~~~~~~I~l~-G~~GsGKsT~~~~L~~~l---~--~~~i~~d   38 (194)
T 1qf9_A            3 KSKPNVVFVL-GGPGSGKGTQCANIVRDF---G--WVHLSAG   38 (194)
T ss_dssp             CCCCEEEEEE-ESTTSSHHHHHHHHHHHH---C--CEEEEHH
T ss_pred             CCcCcEEEEE-CCCCCCHHHHHHHHHHHh---C--CeEeeHH
Confidence            3466777777 667899999999998765   3  3456665

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=93.38  E-value=1.4  Score=36.87  Aligned_cols=65  Identities=9%  Similarity=0.137  Sum_probs=39.4

Q ss_pred             CCEEEEcCCCCCC----------HH-HHHHHhcCCeEEEEeCCChh-h--HHHHHHHHHHHHhc-CCCceEEEEecccCC
Q 047623          167 PDFILIDCPAGID----------AG-FITAITPANEAVLVTTPDIT-S--LRDADRVTGLLECD-GIRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~~----------~~-~~~~l~~ad~viiv~~~~~~-s--~~~~~~~~~~l~~~-~~~~~~vviN~~~~~  231 (340)
                      +.+.|+|+|+...          .. .......+|.++++.+.+.. +  ......+++.+... ....+.+|+|+.+-.
T Consensus        76 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~  155 (228)
T 2qu8_A           76 NKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKC  155 (228)
T ss_dssp             EEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGC
T ss_pred             CeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccC
Confidence            6788999998631          11 12234567888888876532 2  23334555555543 234578999999853

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=93.36  E-value=0.043  Score=54.33  Aligned_cols=84  Identities=19%  Similarity=0.253  Sum_probs=64.5

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHH
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLD  243 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~  243 (340)
                      +|.+-|||||+..+  .....++..+|.+++|++....-..++..+.+.+...+++. .+++|+.++...  +......+
T Consensus        66 ~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~-i~~INKmDr~~a--~~~~~~~~  142 (638)
T 3j25_A           66 NTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPT-IFFINKIDQNGI--DLSTVYQD  142 (638)
T ss_dssp             SCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSC-EECCEECCSSSC--CSHHHHHH
T ss_pred             CEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCe-EEEEeccccccC--CHHHHHHH
Confidence            57788999999765  45577899999999999997776777888899998888876 477999987542  22234667


Q ss_pred             HHHHhCCce
Q 047623          244 IQEMLGLAL  252 (340)
Q Consensus       244 i~~~~g~~v  252 (340)
                      +.+.++..+
T Consensus       143 i~~~l~~~~  151 (638)
T 3j25_A          143 IKEKLSAEI  151 (638)
T ss_dssp             HHHTTCCCC
T ss_pred             HHHHhCCCc
Confidence            778777543

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=93.31  E-value=0.21  Score=40.07  Aligned_cols=36  Identities=31%  Similarity=0.456  Sum_probs=26.4

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHH-------CCCcEEEEec
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLAR-------LGFSVVAIDA   87 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~-------~g~~VlliD~   87 (340)
                      +.+.++ +..|+|||+++..++..+..       .+.++..+++
T Consensus        44 ~~~ll~-G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (195)
T 1jbk_A           44 NNPVLI-GEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM   86 (195)
T ss_dssp             CEEEEE-CCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECH
T ss_pred             CceEEE-CCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeH
Confidence            445555 78899999999999999876       3455555544

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=93.30  E-value=0.12  Score=46.43  Aligned_cols=42  Identities=31%  Similarity=0.304  Sum_probs=33.5

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHH--CCCcEEEEecCCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLAR--LGFSVVAIDADVG   90 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~--~g~~VlliD~D~~   90 (340)
                      +.+.+|++. +..|+||||++..|+..+..  .+.+|.++..|..
T Consensus        90 ~~p~iigI~-GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f  133 (321)
T 3tqc_A           90 KVPYIIGIA-GSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF  133 (321)
T ss_dssp             CCCEEEEEE-CCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             CCCEEEEEE-CCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence            445677777 77789999999999998875  3568999999864

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=93.22  E-value=0.075  Score=50.86  Aligned_cols=64  Identities=13%  Similarity=0.146  Sum_probs=42.8

Q ss_pred             CCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          167 PDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      +.+.|+|||+...  ......+..+|.+++++..+......+.+.+..+...+.+ +.+++|+.+..
T Consensus        51 ~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vP-iIVviNKiDl~  116 (501)
T 1zo1_I           51 GMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVP-VVVAVNKIDKP  116 (501)
T ss_dssp             SCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCC-EEEEEECSSSS
T ss_pred             EEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCce-EEEEEEecccc
Confidence            5668899999542  2223345679999999977654344444555555555665 78999999864

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=93.17  E-value=0.23  Score=40.04  Aligned_cols=66  Identities=14%  Similarity=0.014  Sum_probs=46.7

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC---CCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG---IRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~---~~~~~vviN~~~~~  231 (340)
                      .+.+.|+|+|+..  .......+..+|.++++...+ ..+...+...++.+....   ...+.+|+|+.+-.
T Consensus        69 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  140 (195)
T 3bc1_A           69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLE  140 (195)
T ss_dssp             EEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCG
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence            3788999999854  233445567899999998874 556666677777665432   34678999999864

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=93.16  E-value=0.11  Score=44.18  Aligned_cols=46  Identities=24%  Similarity=0.381  Sum_probs=34.4

Q ss_pred             CCCCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEecCCC
Q 047623           44 ELAGETPRVVVITSGKGGVGKTTTTANVGLSLAR-LGFSVVAIDADVG   90 (340)
Q Consensus        44 ~~~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~-~g~~VlliD~D~~   90 (340)
                      ++....++.|+|. +-.|+||||++..|+..|.. .|++|.++--.|.
T Consensus        15 ~~~~~~~~~i~~~-G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~   61 (223)
T 3ld9_A           15 QTQGPGSMFITFE-GIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPG   61 (223)
T ss_dssp             ----CCCEEEEEE-CSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSC
T ss_pred             cccCCCCeEEEEE-CCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCC
Confidence            3445567777777 66789999999999999999 8999887545554

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=93.15  E-value=0.64  Score=36.15  Aligned_cols=65  Identities=14%  Similarity=0.044  Sum_probs=43.9

Q ss_pred             CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623          167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD---GIRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~  231 (340)
                      +.+.|+|+|+..  .......+..+|.++++.... ..+...+....+.+...   ....+.+|+|+.+-.
T Consensus        51 ~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  121 (167)
T 1kao_A           51 SVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLE  121 (167)
T ss_dssp             EEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGG
T ss_pred             EEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccc
Confidence            568999999854  333455667899988888764 44666666655555432   234678999999853

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=93.14  E-value=0.089  Score=43.19  Aligned_cols=37  Identities=24%  Similarity=0.108  Sum_probs=30.1

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      +++.++ +--|+||||++..++..+..+|.+|+++-..
T Consensus         4 ~i~vi~-G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~   40 (184)
T 2orw_A            4 KLTVIT-GPMYSGKTTELLSFVEIYKLGKKKVAVFKPK   40 (184)
T ss_dssp             CEEEEE-ESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred             EEEEEE-CCCCCCHHHHHHHHHHHHHHCCCeEEEEeec
Confidence            455555 5667899999999999999999999997544

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=93.06  E-value=0.13  Score=44.83  Aligned_cols=66  Identities=14%  Similarity=0.153  Sum_probs=37.8

Q ss_pred             CCCEEEEcCCCCCC-----HHHHHHHh------cCCeEEEEeCCChhhHHHH-HHHHHHHHhc-CC---CceEEEEeccc
Q 047623          166 SPDFILIDCPAGID-----AGFITAIT------PANEAVLVTTPDITSLRDA-DRVTGLLECD-GI---RDIKMVVNRVR  229 (340)
Q Consensus       166 ~~D~VIiD~~~~~~-----~~~~~~l~------~ad~viiv~~~~~~s~~~~-~~~~~~l~~~-~~---~~~~vviN~~~  229 (340)
                      .+.+.|+|||+...     ......+.      .+|.++++...+..++... ..+++.+... +.   ..+.+|+|+++
T Consensus        86 ~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~D  165 (270)
T 1h65_A           86 GFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQ  165 (270)
T ss_dssp             TEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCS
T ss_pred             CeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcc
Confidence            46789999998532     22222222      5899999955443222221 2444444432 22   36889999997


Q ss_pred             CC
Q 047623          230 TD  231 (340)
Q Consensus       230 ~~  231 (340)
                      -.
T Consensus       166 l~  167 (270)
T 1h65_A          166 FS  167 (270)
T ss_dssp             CC
T ss_pred             cC
Confidence            53

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=93.03  E-value=0.38  Score=53.33  Aligned_cols=41  Identities=37%  Similarity=0.355  Sum_probs=35.0

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      .++++.++ +-.|+|||++|.++|...+++|.+|+++|++-.
T Consensus      1426 ~g~~vll~-GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A         1426 MGRIVEIY-GPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 1466 (2050)
T ss_dssp             TTSEEEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC
T ss_pred             CCeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccc
Confidence            44566666 778999999999999999999999999999854

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=93.02  E-value=0.084  Score=46.81  Aligned_cols=42  Identities=19%  Similarity=0.188  Sum_probs=31.7

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCC--CcEEEE-ecCCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLG--FSVVAI-DADVG   90 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g--~~Vlli-D~D~~   90 (340)
                      +.+.+|+|. +..|+||||++..|+..+...|  .++..+ ..|..
T Consensus        29 ~~~~ii~I~-G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f   73 (290)
T 1odf_A           29 KCPLFIFFS-GPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF   73 (290)
T ss_dssp             CSCEEEEEE-CCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred             CCCeEEEEE-CCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence            456778877 7778999999999999998654  444444 88853

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=93.01  E-value=0.11  Score=46.28  Aligned_cols=42  Identities=29%  Similarity=0.256  Sum_probs=33.4

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHH--HCCCcEEEEecCCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLA--RLGFSVVAIDADVG   90 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la--~~g~~VlliD~D~~   90 (340)
                      +.+.+|+++ +..|+||||++..|+..+.  -.+-+|.++++|-.
T Consensus        78 ~~g~iigI~-G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~  121 (308)
T 1sq5_A           78 RIPYIISIA-GSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF  121 (308)
T ss_dssp             CCCEEEEEE-ECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             CCCEEEEEE-CCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence            556788888 5678899999999998886  33457999998864

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=92.99  E-value=0.23  Score=46.56  Aligned_cols=66  Identities=17%  Similarity=0.299  Sum_probs=49.3

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      .+.+.|+|||+...  ......+..+|.+++++..+........+.+..+...+.+.+.+++|+++..
T Consensus       103 ~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~  170 (434)
T 1zun_B          103 KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLN  170 (434)
T ss_dssp             SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTT
T ss_pred             CceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCC
Confidence            46789999999653  3344557889999999998765555566666666666776788999999864

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=92.95  E-value=0.59  Score=44.05  Aligned_cols=64  Identities=17%  Similarity=0.312  Sum_probs=42.7

Q ss_pred             CCEEEEcCCCC---------CCHH----HHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          167 PDFILIDCPAG---------IDAG----FITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~---------~~~~----~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      ..+.|+|||+-         ....    ....+..||.++++++...........+.+.+...+ ..+.+|+|+++-.
T Consensus       243 ~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~-~~~ilv~NK~Dl~  319 (456)
T 4dcu_A          243 QEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAG-KAVVIVVNKWDAV  319 (456)
T ss_dssp             EEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTT-CEEEEEEECGGGS
T ss_pred             ceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcC-CCEEEEEEChhcC
Confidence            46788898882         1211    123567799999998876654455566666666644 4577999999864

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=92.92  E-value=0.11  Score=43.31  Aligned_cols=39  Identities=26%  Similarity=0.273  Sum_probs=30.5

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      +.+.+|+++| ..|+||||++..|+..+..   ++.+++.|..
T Consensus         4 ~~~~~i~i~G-~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~   42 (211)
T 3asz_A            4 PKPFVIGIAG-GTASGKTTLAQALARTLGE---RVALLPMDHY   42 (211)
T ss_dssp             -CCEEEEEEE-STTSSHHHHHHHHHHHHGG---GEEEEEGGGC
T ss_pred             CCcEEEEEEC-CCCCCHHHHHHHHHHHhCC---CeEEEecCcc
Confidence            4567889885 5689999999999887643   6889998864

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=92.74  E-value=0.074  Score=42.61  Aligned_cols=34  Identities=26%  Similarity=0.519  Sum_probs=25.4

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      |+++|.++ +-.|+||||++..||..+   |..  ++|.|
T Consensus         1 m~~~I~l~-G~~GsGKsT~a~~La~~l---g~~--~id~d   34 (173)
T 1e6c_A            1 MTEPIFMV-GARGCGMTTVGRELARAL---GYE--FVDTD   34 (173)
T ss_dssp             CCCCEEEE-SCTTSSHHHHHHHHHHHH---TCE--EEEHH
T ss_pred             CCceEEEE-CCCCCCHHHHHHHHHHHh---CCc--EEccc
Confidence            45677777 568999999999998866   433  56766

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=92.72  E-value=0.12  Score=45.35  Aligned_cols=40  Identities=20%  Similarity=0.237  Sum_probs=29.5

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHC----------CCcEEEEecCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARL----------GFSVVAIDADV   89 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~----------g~~VlliD~D~   89 (340)
                      .+.++.+. +..|+||||++.+++..++..          +.+|++++...
T Consensus        29 ~G~i~~i~-G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~   78 (279)
T 1nlf_A           29 AGTVGALV-SPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAED   78 (279)
T ss_dssp             TTSEEEEE-ESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSS
T ss_pred             CCCEEEEE-cCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCC
Confidence            44566666 788999999999999977642          34677776654

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=92.67  E-value=0.13  Score=45.95  Aligned_cols=38  Identities=21%  Similarity=0.326  Sum_probs=31.7

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEecC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLA-RLGFSVVAIDAD   88 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la-~~g~~VlliD~D   88 (340)
                      .+.+.++ +..|+|||++|..+|..+. +.|.+|..+.+.
T Consensus       152 ~~~lll~-G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~  190 (308)
T 2qgz_A          152 QKGLYLY-GDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP  190 (308)
T ss_dssp             CCEEEEE-CSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred             CceEEEE-CCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence            3455565 6789999999999999999 999999988764

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=92.59  E-value=0.63  Score=37.50  Aligned_cols=66  Identities=15%  Similarity=0.100  Sum_probs=44.3

Q ss_pred             CCCEEEEcCCCC--CCHHHHHHHhcCCeEEEEeCCChh----hHHHHHHHHHHHHhc----CCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAG--IDAGFITAITPANEAVLVTTPDIT----SLRDADRVTGLLECD----GIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~--~~~~~~~~l~~ad~viiv~~~~~~----s~~~~~~~~~~l~~~----~~~~~~vviN~~~~~  231 (340)
                      .+.+.|+|+|+.  ........+..+|.++++.+....    +......+.+++...    ....+.+|.|+.+-.
T Consensus        73 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~  148 (198)
T 3t1o_A           73 KTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLP  148 (198)
T ss_dssp             EEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTST
T ss_pred             ceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcc
Confidence            377899999994  355566677889999999998733    233333333444332    224677999999864

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=92.50  E-value=0.65  Score=50.72  Aligned_cols=42  Identities=33%  Similarity=0.286  Sum_probs=37.1

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      +.+++|-+.|+ -|+||||+|.+.++...++|-.+++||+.-.
T Consensus      1429 prg~~iei~g~-~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~ 1470 (1706)
T 3cmw_A         1429 PMGRIVEIYGP-ESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 1470 (1706)
T ss_dssp             ETTSEEEEECS-TTSSHHHHHHHHHHHHHHTTCCEEEECTTSC
T ss_pred             CCCCEEEEEcC-CCCCHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence            45688999977 8899999999999998899999999999854

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=92.49  E-value=0.15  Score=42.10  Aligned_cols=34  Identities=15%  Similarity=0.195  Sum_probs=26.5

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEe
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAID   86 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD   86 (340)
                      ++|++. +-.|+||||++..||..+...| +|...+
T Consensus         5 ~~I~i~-G~~GsGKsT~~~~L~~~l~~~g-~~~~~~   38 (213)
T 2plr_A            5 VLIAFE-GIDGSGKSSQATLLKDWIELKR-DVYLTE   38 (213)
T ss_dssp             EEEEEE-CCTTSSHHHHHHHHHHHHTTTS-CEEEEE
T ss_pred             eEEEEE-cCCCCCHHHHHHHHHHHHhhcC-CEEEec
Confidence            566666 6789999999999999988777 665443

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=92.47  E-value=0.43  Score=39.36  Aligned_cols=65  Identities=14%  Similarity=-0.097  Sum_probs=44.2

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHH-HHHHHHHhc-CCCceEEEEecccC
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDAD-RVTGLLECD-GIRDIKMVVNRVRT  230 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~-~~~~~l~~~-~~~~~~vviN~~~~  230 (340)
                      .+.+.|+|+|+..  .......+..+|.++++.+.+ ..++..+. .+++.+... ....+.+|.|+.+-
T Consensus        56 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  125 (212)
T 2j0v_A           56 IVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDL  125 (212)
T ss_dssp             EEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHH
T ss_pred             EEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHh
Confidence            3778999999853  333344567899999998874 55666665 566666553 23457799999874

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=92.46  E-value=0.099  Score=44.34  Aligned_cols=42  Identities=19%  Similarity=0.135  Sum_probs=32.3

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHH------CCCcEEEEecCCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLAR------LGFSVVAIDADVG   90 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~------~g~~VlliD~D~~   90 (340)
                      +.+.++.+. +..|+||||++..+|...+.      .+.+|+++|....
T Consensus        22 ~~G~~~~i~-G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~   69 (243)
T 1n0w_A           22 ETGSITEMF-GEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGT   69 (243)
T ss_dssp             ETTSEEEEE-CCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC
T ss_pred             cCCeEEEEE-CCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCC
Confidence            345577777 68899999999999986443      3678999998763

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=92.40  E-value=0.22  Score=46.25  Aligned_cols=65  Identities=18%  Similarity=0.217  Sum_probs=50.7

Q ss_pred             CCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhh-HHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          167 PDFILIDCPAGID--AGFITAITPANEAVLVTTPDITS-LRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s-~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      +.+.|+|||+...  ..+...+..+|.+++++..+... ...+.+.+..+...+...+.+++|+.+..
T Consensus        75 ~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~  142 (403)
T 3sjy_A           75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVV  142 (403)
T ss_dssp             EEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGS
T ss_pred             ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECcccc
Confidence            6789999999643  33455667899999999987654 77777777777777777788999999864

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=92.39  E-value=0.11  Score=42.94  Aligned_cols=35  Identities=23%  Similarity=0.261  Sum_probs=26.5

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEec
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDA   87 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~   87 (340)
                      ++.|++. +-.|+||||++..||..+  .|.++..++.
T Consensus         4 ~~~I~l~-G~~GsGKsT~~~~L~~~l--~g~~~~~~~~   38 (204)
T 2v54_A            4 GALIVFE-GLDKSGKTTQCMNIMESI--PANTIKYLNF   38 (204)
T ss_dssp             CCEEEEE-CCTTSSHHHHHHHHHHTS--CGGGEEEEES
T ss_pred             CcEEEEE-cCCCCCHHHHHHHHHHHH--CCCceEEEec
Confidence            4567777 667899999999998876  4677766553

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=92.39  E-value=0.19  Score=40.29  Aligned_cols=36  Identities=25%  Similarity=0.449  Sum_probs=26.6

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      ..+.+|+++ +-.|+||||++..|+..+   |  ..++|.|.
T Consensus         6 ~~g~~i~l~-G~~GsGKSTl~~~l~~~~---g--~~~i~~d~   41 (175)
T 1knq_A            6 HDHHIYVLM-GVSGSGKSAVASEVAHQL---H--AAFLDGDF   41 (175)
T ss_dssp             TTSEEEEEE-CSTTSCHHHHHHHHHHHH---T--CEEEEGGG
T ss_pred             CCCcEEEEE-cCCCCCHHHHHHHHHHhh---C--cEEEeCcc
Confidence            345677777 777899999999998776   4  34667764

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=92.38  E-value=0.45  Score=37.29  Aligned_cols=65  Identities=12%  Similarity=0.030  Sum_probs=46.0

Q ss_pred             CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcCC--CceEEEEecccCC
Q 047623          167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDGI--RDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~~--~~~~vviN~~~~~  231 (340)
                      +.+.|+|+|+..  .......+..+|.++++...+ ..+...+...++.+.....  ..+.+|.|+.+..
T Consensus        55 ~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~  124 (170)
T 1z0j_A           55 HKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLT  124 (170)
T ss_dssp             EEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCG
T ss_pred             EEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccc
Confidence            678999999853  333455678899999988765 4566777777777765433  3566788998864

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=92.35  E-value=0.37  Score=39.41  Aligned_cols=65  Identities=9%  Similarity=-0.017  Sum_probs=46.1

Q ss_pred             CCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC--CCceEEEEecccCC
Q 047623          167 PDFILIDCPAGID--AGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG--IRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~~  231 (340)
                      +.+.|+|+|+...  ......+..+|.++++...+ ..++..+...++.+....  ...+.+|.|+.+-.
T Consensus        57 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~  126 (203)
T 1zbd_A           57 IKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDME  126 (203)
T ss_dssp             EEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCT
T ss_pred             EEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC
Confidence            6789999998542  23344567899999998875 456677777777776532  34677999999864

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=92.35  E-value=0.23  Score=46.97  Aligned_cols=66  Identities=21%  Similarity=0.304  Sum_probs=48.1

Q ss_pred             CCCEEEEcCCCCCCH--HHHHHHhcCCeEEEEeCCChhhHH-------HHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGIDA--GFITAITPANEAVLVTTPDITSLR-------DADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~~--~~~~~l~~ad~viiv~~~~~~s~~-------~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      .+.++|+|||+....  .+...+..+|.++++++.+.....       ...+.+..+...+.+.+.+++|+++..
T Consensus        84 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~  158 (458)
T 1f60_A           84 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSV  158 (458)
T ss_dssp             SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGG
T ss_pred             CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccc
Confidence            478999999996543  233445779999999998865443       555566666666776788999999864

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=92.20  E-value=0.1  Score=43.28  Aligned_cols=40  Identities=28%  Similarity=0.302  Sum_probs=29.0

Q ss_pred             CCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           46 AGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      ..+++.+|+++ +..|+||||++..|+..+.    .+.++|.|..
T Consensus        17 ~~~~~~~i~i~-G~~GsGKSTl~~~L~~~~~----~~~~i~~D~~   56 (207)
T 2qt1_A           17 RGSKTFIIGIS-GVTNSGKTTLAKNLQKHLP----NCSVISQDDF   56 (207)
T ss_dssp             CSCCCEEEEEE-ESTTSSHHHHHHHHHTTST----TEEEEEGGGG
T ss_pred             cCCCCeEEEEE-CCCCCCHHHHHHHHHHhcC----CcEEEeCCcc
Confidence            34556788888 5568999999988776432    5788888853

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=92.17  E-value=0.75  Score=37.35  Aligned_cols=66  Identities=15%  Similarity=0.062  Sum_probs=47.1

Q ss_pred             CCCEEEEcCCCCCC-HHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGID-AGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD---GIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~-~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~  231 (340)
                      .+.+.|+|+|+... ......+..+|.++++...+ ..++..+...++.+...   ....+.+|.|+.+..
T Consensus        75 ~~~~~l~Dt~G~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~  145 (196)
T 2atv_A           75 VVSMEILDTAGQEDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD  145 (196)
T ss_dssp             EEEEEEEECCCCCCCHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGG
T ss_pred             EEEEEEEECCCCCcccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccc
Confidence            37788999999664 45566678899999998875 45666666666666542   223578999999864

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=92.17  E-value=0.15  Score=46.21  Aligned_cols=35  Identities=29%  Similarity=0.348  Sum_probs=27.1

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      .++|+|. +-.|+||||+|..||..+.     +.+|++|..
T Consensus         7 ~~lI~I~-GptgSGKTtla~~La~~l~-----~~iis~Ds~   41 (340)
T 3d3q_A            7 PFLIVIV-GPTASGKTELSIEVAKKFN-----GEIISGDSM   41 (340)
T ss_dssp             CEEEEEE-CSTTSSHHHHHHHHHHHTT-----EEEEECCSS
T ss_pred             CceEEEE-CCCcCcHHHHHHHHHHHcC-----Cceeccccc
Confidence            3566666 6688999999999998653     788999854

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=92.15  E-value=0.73  Score=37.23  Aligned_cols=66  Identities=15%  Similarity=-0.057  Sum_probs=46.6

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC--CCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG--IRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~~  231 (340)
                      .+.+.|+|+|+..  .......+..+|.++++...+ ..+...+...++.+....  ...+.+|+|+.+-.
T Consensus        73 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~  143 (193)
T 2oil_A           73 AVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLS  143 (193)
T ss_dssp             EEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGG
T ss_pred             EEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcc
Confidence            3678999999843  445566778899999988875 445666666666665532  24578999998853

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=92.13  E-value=0.47  Score=38.44  Aligned_cols=65  Identities=11%  Similarity=-0.044  Sum_probs=46.2

Q ss_pred             CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC--CCceEEEEecccCC
Q 047623          167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG--IRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~~  231 (340)
                      +.+.|+|+|+..  .......+..+|.++++...+ ..+...+...++.+....  ...+.+|.|+.+-.
T Consensus        70 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~  139 (191)
T 2a5j_A           70 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLE  139 (191)
T ss_dssp             EEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred             EEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccC
Confidence            678999999842  333456678899999998874 456666677776666532  24577899999863

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=92.10  E-value=0.4  Score=39.32  Aligned_cols=66  Identities=8%  Similarity=-0.049  Sum_probs=46.6

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC--CCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG--IRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~~  231 (340)
                      .+.+.|+|+|+..  .......+..+|.++++...+ ..++..+...++.+....  ...+.+|+|+.+-.
T Consensus        56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~  126 (206)
T 2bcg_Y           56 TVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLK  126 (206)
T ss_dssp             EEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred             EEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence            3688999999853  233345567899999998875 456777777777776532  24577899999864

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=92.09  E-value=0.45  Score=37.83  Aligned_cols=65  Identities=9%  Similarity=-0.003  Sum_probs=43.1

Q ss_pred             CCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC--CCceEEEEecccCC
Q 047623          167 PDFILIDCPAGID--AGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG--IRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~~  231 (340)
                      +.+.|+|+|+...  ......+..+|.++++...+ ..+...+...++.+....  ...+.+|.|+.+-.
T Consensus        60 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~  129 (180)
T 2g6b_A           60 VKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSA  129 (180)
T ss_dssp             EEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTT
T ss_pred             EEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccC
Confidence            6789999998542  23344567899999998875 445666666666665432  24677999999864

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=92.05  E-value=0.05  Score=45.34  Aligned_cols=35  Identities=26%  Similarity=0.388  Sum_probs=28.6

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEec
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDA   87 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~   87 (340)
                      +|+|. +-.|+||||++..|+..+...|.+|.++..
T Consensus         2 ~I~i~-G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~   36 (214)
T 1gtv_A            2 LIAIE-GVDGAGKRTLVEKLSGAFRAAGRSVATLAF   36 (214)
T ss_dssp             EEEEE-EEEEEEHHHHHHHHHHHHHEEEEEEEEEES
T ss_pred             EEEEE-cCCCCCHHHHHHHHHHHHHhcCCeEEEEee
Confidence            45565 566899999999999999888888887753

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=92.04  E-value=0.026  Score=55.40  Aligned_cols=66  Identities=26%  Similarity=0.308  Sum_probs=36.4

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhh-------HHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITS-------LRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s-------~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      .+.+.|+|||+...  ..+...+..+|.+|+|+..+...       ...+.+.+..+...+.+.+.+|+|+++..
T Consensus       254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~  328 (592)
T 3mca_A          254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLM  328 (592)
T ss_dssp             -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGG
T ss_pred             CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccc
Confidence            47889999999542  12233456789988888775421       34455566666677777788999999853

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=92.03  E-value=0.27  Score=38.64  Aligned_cols=64  Identities=9%  Similarity=-0.010  Sum_probs=45.4

Q ss_pred             CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC--CCceEEEEecccC
Q 047623          167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG--IRDIKMVVNRVRT  230 (340)
Q Consensus       167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~  230 (340)
                      +.+.|+|+|+..  .......+..+|.++++...+ ..+...+...++.+....  ...+.+|+|+.+-
T Consensus        52 ~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl  120 (170)
T 1g16_A           52 VKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM  120 (170)
T ss_dssp             EEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC
T ss_pred             EEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC
Confidence            678999999842  333456677899999998875 446666666666665532  3467899999886

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=92.01  E-value=0.57  Score=38.41  Aligned_cols=65  Identities=11%  Similarity=-0.060  Sum_probs=46.5

Q ss_pred             CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC--CCceEEEEecccCC
Q 047623          167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG--IRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~~  231 (340)
                      +.+.|+|+|+..  .......+..+|.++++.+.+ ..++..+...++.+....  ...+.+|.|+.+-.
T Consensus        78 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~  147 (201)
T 2hup_A           78 VKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLS  147 (201)
T ss_dssp             EEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred             EEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccc
Confidence            788999999864  233455677899999999875 456667777777666532  24567889998864

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=92.01  E-value=1.6  Score=39.61  Aligned_cols=65  Identities=17%  Similarity=0.200  Sum_probs=40.9

Q ss_pred             CCEEEEcCCCCCCH-------H---HHHHH-hcCCeEEEEeCCChh---hHHHHHHHHHHHHhc-CCCceEEEEecccCC
Q 047623          167 PDFILIDCPAGIDA-------G---FITAI-TPANEAVLVTTPDIT---SLRDADRVTGLLECD-GIRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~~~-------~---~~~~l-~~ad~viiv~~~~~~---s~~~~~~~~~~l~~~-~~~~~~vviN~~~~~  231 (340)
                      .++.++|||+....       .   ....+ ..+|.++++++.+..   +......+++.+... +...+.+|.|+.+-.
T Consensus       214 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~  293 (357)
T 2e87_A          214 FRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA  293 (357)
T ss_dssp             EEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred             ceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence            56788899885321       1   11122 358999999986543   456656666666542 245677999999864

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=92.00  E-value=0.16  Score=41.90  Aligned_cols=36  Identities=39%  Similarity=0.494  Sum_probs=26.6

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      +.+.+|+++ +-.|+||||++..|+..+   |  ...+|.|.
T Consensus        27 ~~g~~i~l~-G~~GsGKSTl~~~L~~~~---g--~~~i~~d~   62 (200)
T 4eun_A           27 EPTRHVVVM-GVSGSGKTTIAHGVADET---G--LEFAEADA   62 (200)
T ss_dssp             -CCCEEEEE-CCTTSCHHHHHHHHHHHH---C--CEEEEGGG
T ss_pred             CCCcEEEEE-CCCCCCHHHHHHHHHHhh---C--CeEEcccc
Confidence            445677777 777899999999999877   4  34567664

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=91.99  E-value=0.1  Score=43.09  Aligned_cols=34  Identities=32%  Similarity=0.348  Sum_probs=25.1

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      .+++|++. +-.|+||||++..||..+   |..  .+|.|
T Consensus        24 ~~~~i~l~-G~~GsGKsTl~~~La~~l---~~~--~i~~d   57 (199)
T 3vaa_A           24 AMVRIFLT-GYMGAGKTTLGKAFARKL---NVP--FIDLD   57 (199)
T ss_dssp             CCCEEEEE-CCTTSCHHHHHHHHHHHH---TCC--EEEHH
T ss_pred             CCCEEEEE-cCCCCCHHHHHHHHHHHc---CCC--EEcch
Confidence            45677776 678899999999999877   433  35555

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=91.99  E-value=0.13  Score=44.56  Aligned_cols=65  Identities=14%  Similarity=0.191  Sum_probs=37.0

Q ss_pred             CCCEEEEcCCCCCC-----HHHHHHHh------cCCeEEEEeCCChhhHHHH-HHHHHHHHhc-C---CCceEEEEeccc
Q 047623          166 SPDFILIDCPAGID-----AGFITAIT------PANEAVLVTTPDITSLRDA-DRVTGLLECD-G---IRDIKMVVNRVR  229 (340)
Q Consensus       166 ~~D~VIiD~~~~~~-----~~~~~~l~------~ad~viiv~~~~~~s~~~~-~~~~~~l~~~-~---~~~~~vviN~~~  229 (340)
                      ...+.|+|||+..+     ......+.      .+|.+++|...+...+... ..+++.+... +   ...+.+|+|+.+
T Consensus        83 ~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~D  162 (262)
T 3def_A           83 GFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQ  162 (262)
T ss_dssp             TEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTT
T ss_pred             CeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcc
Confidence            35789999999532     22222232      6799999865543222222 2344444332 1   236789999987


Q ss_pred             C
Q 047623          230 T  230 (340)
Q Consensus       230 ~  230 (340)
                      -
T Consensus       163 l  163 (262)
T 3def_A          163 F  163 (262)
T ss_dssp             C
T ss_pred             c
Confidence            5

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=91.97  E-value=0.46  Score=37.62  Aligned_cols=65  Identities=15%  Similarity=0.071  Sum_probs=45.3

Q ss_pred             CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc--CCCceEEEEecccCC
Q 047623          167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD--GIRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~--~~~~~~vviN~~~~~  231 (340)
                      +.+.|+|+|+..  .......+..+|.++++...+ ..+...+...++.+...  ....+.+|+|+.+-.
T Consensus        63 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~  132 (179)
T 2y8e_A           63 VRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS  132 (179)
T ss_dssp             EEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGG
T ss_pred             EEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccc
Confidence            678999999853  333455678899999998874 45666666666666543  224577999998853

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=91.97  E-value=0.17  Score=48.72  Aligned_cols=39  Identities=18%  Similarity=0.247  Sum_probs=32.8

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      +.+.++.+-.|+||||+|..||..|...+.++.+++.|.
T Consensus        35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~   73 (520)
T 2axn_A           35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGE   73 (520)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccH
Confidence            344455588999999999999999998899999998874

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=91.94  E-value=0.21  Score=42.01  Aligned_cols=36  Identities=25%  Similarity=0.327  Sum_probs=30.1

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEe
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAID   86 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD   86 (340)
                      ++.|+|. +-.|+||||.+..|+..|...|++|.+..
T Consensus         6 g~~i~~e-G~~gsGKsT~~~~l~~~l~~~~~~v~~~~   41 (213)
T 4edh_A            6 GLFVTLE-GPEGAGKSTNRDYLAERLRERGIEVQLTR   41 (213)
T ss_dssp             CEEEEEE-CSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             ceEEEEE-cCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence            4566665 77789999999999999999999997654

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=91.93  E-value=0.23  Score=45.06  Aligned_cols=42  Identities=31%  Similarity=0.353  Sum_probs=32.9

Q ss_pred             CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC---CCcEEEEecCC
Q 047623           47 GETPRVVVITSGKGGVGKTTTTANVGLSLARL---GFSVVAIDADV   89 (340)
Q Consensus        47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~---g~~VlliD~D~   89 (340)
                      ...+..+.++ +..|+||||++..++..+...   +..++.+++..
T Consensus        42 ~~~~~~vli~-G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~   86 (386)
T 2qby_A           42 EEKPNNIFIY-GLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ   86 (386)
T ss_dssp             TCCCCCEEEE-ECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred             CCCCCeEEEE-CCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence            3445566666 778999999999999988765   77888888754

>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}

Probab=91.87  E-value=0.25  Score=47.13  Aligned_cols=41  Identities=37%  Similarity=0.587  Sum_probs=37.9

Q ss_pred             CEEEEEEcCC-CCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           50 PRVVVITSGK-GGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        50 ~~iI~v~s~k-GGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      +|-|.|+|+- .|.||-.+|++|+..|..+|++|..+.+||.
T Consensus         3 ~k~i~vtggv~s~lgkgi~~as~g~ll~~~g~~v~~~k~dpy   44 (535)
T 3nva_A            3 NKYIVVTGGVLSSVGKGTLVASIGMLLKRRGYNVTAVKIDPY   44 (535)
T ss_dssp             CEEEEEECCCSTTTTHHHHHHHHHHHHHHTTCCEEEEEEECS
T ss_pred             ceEEEEeCccccCcchHHHHHHHHHHHHHCCceEEEEecCcc
Confidence            6888888866 8999999999999999999999999999984

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=91.86  E-value=0.43  Score=39.25  Aligned_cols=64  Identities=11%  Similarity=0.000  Sum_probs=45.5

Q ss_pred             CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC--CCceEEEEecccC
Q 047623          167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG--IRDIKMVVNRVRT  230 (340)
Q Consensus       167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~  230 (340)
                      +.+.|+|+|+..  .......+..+|.++++.... ..++..+...++.+....  ...+.+|+|+.+-
T Consensus        69 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl  137 (213)
T 3cph_A           69 VKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM  137 (213)
T ss_dssp             EEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC
T ss_pred             EEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC
Confidence            678999999843  233456678899999998875 445666666666665432  2467899999986

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=91.85  E-value=0.19  Score=41.97  Aligned_cols=36  Identities=25%  Similarity=0.361  Sum_probs=28.3

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEe
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAID   86 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD   86 (340)
                      |++-|+|= +--|+||||.+..|+.+|. +|.+|.+.-
T Consensus         1 M~kFI~~E-G~dGsGKsTq~~~L~~~L~-~~~~v~~~~   36 (205)
T 4hlc_A            1 MSAFITFE-GPEGSGKTTVINEVYHRLV-KDYDVIMTR   36 (205)
T ss_dssp             -CEEEEEE-CCTTSCHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred             CCCEEEEE-CCCCCcHHHHHHHHHHHHH-CCCCEEEee
Confidence            56777776 5558999999999999996 588887753

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=91.82  E-value=0.17  Score=48.52  Aligned_cols=41  Identities=7%  Similarity=-0.001  Sum_probs=33.1

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHH-C-CCcEEEEecCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLAR-L-GFSVVAIDADV   89 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~-~-g~~VlliD~D~   89 (340)
                      +.+.+|.++ +-.|+||||++..||..|.. . |..+-++|.|.
T Consensus       393 ~~~~~I~l~-GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~  435 (511)
T 1g8f_A          393 KQGFSIVLG-NSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN  435 (511)
T ss_dssp             GCCEEEEEC-TTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred             ccceEEEec-ccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence            344566665 66799999999999999997 5 57788999886

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=91.82  E-value=0.26  Score=46.25  Aligned_cols=66  Identities=23%  Similarity=0.313  Sum_probs=49.2

Q ss_pred             CCCEEEEcCCCCCCH--HHHHHHhcCCeEEEEeCCChhhHH-------HHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGIDA--GFITAITPANEAVLVTTPDITSLR-------DADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~~--~~~~~l~~ad~viiv~~~~~~s~~-------~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      .+.+.|+|||+....  .+...+..+|.++++++.+..+++       .+.+....+...+.+.+.+++|+.+..
T Consensus        83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~  157 (435)
T 1jny_A           83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLT  157 (435)
T ss_dssp             SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGS
T ss_pred             CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCC
Confidence            588999999997653  234456789999999999876555       445555555666777788999999864

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=91.81  E-value=0.3  Score=39.15  Aligned_cols=65  Identities=11%  Similarity=-0.023  Sum_probs=40.1

Q ss_pred             CCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC--CCceEEEEecccCC
Q 047623          167 PDFILIDCPAGID--AGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG--IRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~~  231 (340)
                      +.+.|+|+|+...  ......+..+|.++++.+.+ ..++..+...++.+....  ...+.+|.|+.+-.
T Consensus        57 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~  126 (183)
T 2fu5_C           57 IKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVN  126 (183)
T ss_dssp             EEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CC
T ss_pred             EEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCC
Confidence            7789999998532  22234456799999998875 456677777777766532  24677999999864

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=91.78  E-value=0.16  Score=41.91  Aligned_cols=37  Identities=24%  Similarity=0.392  Sum_probs=27.1

Q ss_pred             CCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           46 AGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      ....+++|++. +-.|+||||++..|+..+   |.  ..+|+|
T Consensus        11 ~~~~~~~I~l~-G~~GsGKsT~~~~L~~~~---g~--~~i~~d   47 (203)
T 1ukz_A           11 SPDQVSVIFVL-GGPGAGKGTQCEKLVKDY---SF--VHLSAG   47 (203)
T ss_dssp             CTTTCEEEEEE-CSTTSSHHHHHHHHHHHS---SC--EEEEHH
T ss_pred             CCCCCcEEEEE-CCCCCCHHHHHHHHHHHc---Cc--eEEeHH
Confidence            34556777777 677899999999988753   44  556766

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=91.77  E-value=0.61  Score=36.46  Aligned_cols=65  Identities=17%  Similarity=-0.023  Sum_probs=46.1

Q ss_pred             CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC--CCceEEEEecccCC
Q 047623          167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG--IRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~~  231 (340)
                      +.+.|+|+|+..  .......+..+|.++++...+ ..+...+...++.+....  ...+.+|.|+.+..
T Consensus        52 ~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  121 (170)
T 1ek0_A           52 VKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXL  121 (170)
T ss_dssp             EEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred             EEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc
Confidence            678999999853  344556678899999998775 456677766666665432  23567889998854

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=91.73  E-value=0.17  Score=47.77  Aligned_cols=67  Identities=16%  Similarity=0.125  Sum_probs=34.9

Q ss_pred             CCCCCCCCCCCCCh---hhHHHHHhhCCCCCCCCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCC-cEEEEe
Q 047623           17 PSKTIKPLKPFSSK---SSIQSVLQWNRKPELAGETPRVVVITSGKGGVGKTTTTANVGLSLARLGF-SVVAID   86 (340)
Q Consensus        17 ~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~-~VlliD   86 (340)
                      +..+..+++|.+..   ..++..+......... +. . ..+..+..|+|||+++..++..|.+.|. +|+++-
T Consensus        11 ~~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~-~~-~-~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a   81 (459)
T 3upu_A           11 SSGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKE-KK-H-HVTINGPAGTGATTLTKFIIEALISTGETGIILAA   81 (459)
T ss_dssp             ----------CCSSCCCHHHHHHHHHHHHHHHS-SS-C-EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             cCCCccccCCCccccCCHHHHHHHHHHHHHHhc-CC-C-EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEec
Confidence            55556666666533   2344444332111101 11 2 4444578999999999999999999887 677763

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=91.71  E-value=0.67  Score=37.43  Aligned_cols=65  Identities=12%  Similarity=0.044  Sum_probs=44.0

Q ss_pred             CCEEEEcCCCCCC-HHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc-----CCCceEEEEecccCC
Q 047623          167 PDFILIDCPAGID-AGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD-----GIRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~~-~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~-----~~~~~~vviN~~~~~  231 (340)
                      +.+.|+|+++... ......+..+|.++++...+ ..++..+...++.+...     ....+.+|.|+.+-.
T Consensus        69 ~~l~i~Dt~G~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~  140 (187)
T 3c5c_A           69 VHLRVMDTADLDTPRNCERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMA  140 (187)
T ss_dssp             EEEEEEECCC---CCCTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGG
T ss_pred             EEEEEEECCCCCcchhHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchh
Confidence            6788999998431 11245677899988888775 55777777666666543     234578999998863

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=91.71  E-value=0.33  Score=38.22  Aligned_cols=66  Identities=15%  Similarity=0.021  Sum_probs=42.4

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc--CCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD--GIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~--~~~~~~vviN~~~~~  231 (340)
                      .+.+.|+|+|+...  ......+..+|.++++...+ ..+...+...++.+...  ....+.+|.|+.+-.
T Consensus        54 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  124 (170)
T 1z08_A           54 RVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLE  124 (170)
T ss_dssp             EEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGG
T ss_pred             EEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccc
Confidence            36789999998542  22233456789999988874 45666666666666542  224577999998864

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=91.68  E-value=0.18  Score=40.38  Aligned_cols=26  Identities=23%  Similarity=0.497  Sum_probs=21.2

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHH
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLAR   77 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~   77 (340)
                      +.+.++ +..|+|||+++..++..+.+
T Consensus        44 ~~vll~-G~~G~GKT~la~~~~~~~~~   69 (187)
T 2p65_A           44 NNPILL-GDPGVGKTAIVEGLAIKIVQ   69 (187)
T ss_dssp             CEEEEE-SCGGGCHHHHHHHHHHHHHT
T ss_pred             CceEEE-CCCCCCHHHHHHHHHHHHHh
Confidence            445454 77899999999999999876

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=91.65  E-value=0.17  Score=41.20  Aligned_cols=36  Identities=25%  Similarity=0.379  Sum_probs=25.4

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      ..+++|.++ +..|+||||++..||..+  .|  .-.+|+|
T Consensus         8 ~~~~~I~l~-G~~GsGKSTv~~~La~~l--~g--~~~id~d   43 (184)
T 1y63_A            8 PKGINILIT-GTPGTGKTSMAEMIAAEL--DG--FQHLEVG   43 (184)
T ss_dssp             CSSCEEEEE-CSTTSSHHHHHHHHHHHS--TT--EEEEEHH
T ss_pred             CCCCEEEEE-CCCCCCHHHHHHHHHHhc--CC--CEEeeHH
Confidence            344567666 678999999998888752  23  4557776

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=91.65  E-value=0.11  Score=41.88  Aligned_cols=33  Identities=30%  Similarity=0.469  Sum_probs=24.0

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      |++|++. +-.|+||||++..||..+   |  ..++|.|
T Consensus         4 m~~i~i~-G~~GsGKsTla~~La~~l---~--~~~~d~d   36 (175)
T 1via_A            4 AKNIVFI-GFMGSGKSTLARALAKDL---D--LVFLDSD   36 (175)
T ss_dssp             -CCEEEE-CCTTSCHHHHHHHHHHHH---T--CEEEEHH
T ss_pred             CCEEEEE-cCCCCCHHHHHHHHHHHc---C--CCEEccc
Confidence            4566666 778999999999998765   3  3456765

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=91.63  E-value=0.17  Score=40.69  Aligned_cols=34  Identities=21%  Similarity=0.280  Sum_probs=23.2

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      +++|.+. +-.|+||||+|..|+..    ......+|.|
T Consensus         2 ~~~I~i~-G~~GsGKST~a~~L~~~----~~~~~~i~~d   35 (181)
T 1ly1_A            2 KKIILTI-GCPGSGKSTWAREFIAK----NPGFYNINRD   35 (181)
T ss_dssp             CEEEEEE-CCTTSSHHHHHHHHHHH----STTEEEECHH
T ss_pred             CeEEEEe-cCCCCCHHHHHHHHHhh----cCCcEEecHH
Confidence            3455554 78899999999988872    2245566654

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=91.61  E-value=0.73  Score=37.13  Aligned_cols=65  Identities=11%  Similarity=-0.044  Sum_probs=45.0

Q ss_pred             CCEEEEcCCCCCC---HHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623          167 PDFILIDCPAGID---AGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD---GIRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~~---~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~  231 (340)
                      +.+.|+|+|+...   ......+..+|.++++.+.+ ..++..+...++.+...   ....+.+|.|+.+..
T Consensus        69 ~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  140 (189)
T 1z06_A           69 IKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR  140 (189)
T ss_dssp             EEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCG
T ss_pred             EEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence            6789999998532   23455677899999998864 45666666666655543   224578999999864

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=91.59  E-value=0.15  Score=41.60  Aligned_cols=26  Identities=35%  Similarity=0.630  Sum_probs=20.3

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHH
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSL   75 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~l   75 (340)
                      ++++|.+. +-.|+||||++..|+..+
T Consensus         4 ~~~~I~l~-G~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A            4 TPALIIVT-GHPATGKTTLSQALATGL   29 (193)
T ss_dssp             CCEEEEEE-ESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEE-CCCCCCHHHHHHHHHHHc
Confidence            34566665 677899999999999876

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=91.58  E-value=0.17  Score=43.73  Aligned_cols=33  Identities=21%  Similarity=0.298  Sum_probs=24.3

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      ++|++. +-.|+||||+|..||..+   |.  .+++.|.
T Consensus         2 ~li~I~-G~~GSGKSTla~~La~~~---~~--~~i~~D~   34 (253)
T 2ze6_A            2 LLHLIY-GPTCSGKTDMAIQIAQET---GW--PVVALDR   34 (253)
T ss_dssp             EEEEEE-CCTTSSHHHHHHHHHHHH---CC--CEEECCS
T ss_pred             eEEEEE-CCCCcCHHHHHHHHHhcC---CC--eEEeccH
Confidence            566665 678899999999998765   33  3567764

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=91.54  E-value=1.2  Score=35.08  Aligned_cols=65  Identities=14%  Similarity=0.072  Sum_probs=42.3

Q ss_pred             CCEEEEcCCCCCC----HHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC---CCceEEEEecccCC
Q 047623          167 PDFILIDCPAGID----AGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG---IRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~~----~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~---~~~~~vviN~~~~~  231 (340)
                      +.+.++|+|+...    ......+..+|.++++...+ ..++..+......+....   ...+.+|.|+.+-.
T Consensus        52 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~  124 (175)
T 2nzj_A           52 TTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLA  124 (175)
T ss_dssp             EEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCT
T ss_pred             EEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhc
Confidence            6788999998543    22334456689888887764 567777777777666531   24578999999864

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=91.50  E-value=0.15  Score=40.68  Aligned_cols=33  Identities=18%  Similarity=0.333  Sum_probs=23.6

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      ++|.+. +-.|+||||++..||..+   |..  .+|.|.
T Consensus         2 ~~i~l~-G~~GsGKsT~~~~L~~~l---~~~--~i~~d~   34 (173)
T 3kb2_A            2 TLIILE-GPDCCFKSTVAAKLSKEL---KYP--IIKGSS   34 (173)
T ss_dssp             CEEEEE-CSSSSSHHHHHHHHHHHH---CCC--EEECCC
T ss_pred             eEEEEE-CCCCCCHHHHHHHHHHHh---CCe--eecCcc
Confidence            455555 778999999999888765   433  466664

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=91.48  E-value=0.096  Score=43.33  Aligned_cols=32  Identities=34%  Similarity=0.482  Sum_probs=23.6

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      ++|+++ +..|+||||++..||. +   |  +-++|+|.
T Consensus         2 ~~i~i~-G~~GsGKSTl~~~L~~-~---g--~~~i~~d~   33 (204)
T 2if2_A            2 KRIGLT-GNIGCGKSTVAQMFRE-L---G--AYVLDADK   33 (204)
T ss_dssp             CEEEEE-ECTTSSHHHHHHHHHH-T---T--CEEEEHHH
T ss_pred             eEEEEE-CCCCcCHHHHHHHHHH-C---C--CEEEEccH
Confidence            567777 5678999999988887 4   5  44566663

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=91.41  E-value=0.95  Score=35.21  Aligned_cols=66  Identities=11%  Similarity=-0.007  Sum_probs=45.8

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD---GIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~  231 (340)
                      .+.+.++|+|+..  .......+..+|.++++...+ ..++..+...++.+...   ....+.+|.|+.+-.
T Consensus        50 ~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  121 (167)
T 1c1y_A           50 QCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLE  121 (167)
T ss_dssp             EEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCG
T ss_pred             EEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccc
Confidence            3678999999853  445556677899999988764 45666666666555432   234578999999864

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=91.40  E-value=0.12  Score=42.02  Aligned_cols=34  Identities=32%  Similarity=0.508  Sum_probs=24.9

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      +++|+++ +-.|+||||+|..||..+   |..  ++|.|.
T Consensus         2 ~~~I~l~-G~~GsGKsT~a~~La~~l---g~~--~id~D~   35 (184)
T 2iyv_A            2 APKAVLV-GLPGSGKSTIGRRLAKAL---GVG--LLDTDV   35 (184)
T ss_dssp             CCSEEEE-CSTTSSHHHHHHHHHHHH---TCC--EEEHHH
T ss_pred             CCeEEEE-CCCCCCHHHHHHHHHHHc---CCC--EEeCch
Confidence            3456666 778999999999998865   444  567763

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=91.39  E-value=0.44  Score=40.05  Aligned_cols=39  Identities=13%  Similarity=0.011  Sum_probs=32.2

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEec
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDA   87 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~   87 (340)
                      ..+++..++ +.=|+||||.+..+|..+..+|++|+++-.
T Consensus        26 ~~G~l~vit-G~MgsGKTT~lL~~a~r~~~~g~kVli~k~   64 (214)
T 2j9r_A           26 QNGWIEVIC-GSMFSGKSEELIRRVRRTQFAKQHAIVFKP   64 (214)
T ss_dssp             CSCEEEEEE-CSTTSCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCCEEEEEE-CCCCCcHHHHHHHHHHHHHHCCCEEEEEEe
Confidence            445666665 566889999999999999999999999864

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=91.28  E-value=0.31  Score=46.37  Aligned_cols=66  Identities=20%  Similarity=0.335  Sum_probs=47.8

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhH-------HHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSL-------RDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      .+.+.|+|+|+...  ..+...+..+|.+++++..+....       ....+.+..+...+.+.+.+++|+++..
T Consensus       110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~  184 (483)
T 3p26_A          110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNV  184 (483)
T ss_dssp             SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGG
T ss_pred             CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcc
Confidence            58899999999643  334556778999999998876422       3555666666666777788999999854

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=91.26  E-value=0.11  Score=42.81  Aligned_cols=33  Identities=27%  Similarity=0.492  Sum_probs=24.8

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      ++|+++ +..|+||||++..||..+   |  .-++|.|.
T Consensus         3 ~~i~i~-G~~GsGKst~~~~la~~l---g--~~~~d~d~   35 (208)
T 3ake_A            3 GIVTID-GPSASGKSSVARRVAAAL---G--VPYLSSGL   35 (208)
T ss_dssp             SEEEEE-CSTTSSHHHHHHHHHHHH---T--CCEEEHHH
T ss_pred             eEEEEE-CCCCCCHHHHHHHHHHhc---C--Cceeccch
Confidence            477777 677899999999998866   3  44567763

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=91.26  E-value=0.43  Score=37.90  Aligned_cols=65  Identities=11%  Similarity=-0.042  Sum_probs=45.0

Q ss_pred             CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC-CCceEEEEecccCC
Q 047623          167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG-IRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~-~~~~~vviN~~~~~  231 (340)
                      +.+.|+|+|+..  .......+..+|.++++...+ ..+...+...+..+.... ...+.+|.|+.+..
T Consensus        58 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  126 (181)
T 3tw8_B           58 VKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDP  126 (181)
T ss_dssp             EEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCG
T ss_pred             EEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCc
Confidence            678999999842  333345567899999988764 556666666666665432 34567899999854

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=91.25  E-value=0.28  Score=44.54  Aligned_cols=42  Identities=24%  Similarity=0.230  Sum_probs=31.9

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC------CCcEEEEecCCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARL------GFSVVAIDADVG   90 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~------g~~VlliD~D~~   90 (340)
                      ..+..+.++ +..|+||||++..++..+.+.      +..+..+++...
T Consensus        42 ~~~~~vll~-G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   89 (387)
T 2v1u_A           42 EKPSNALLY-GLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR   89 (387)
T ss_dssp             CCCCCEEEC-BCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTS
T ss_pred             CCCCcEEEE-CCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcC
Confidence            444555555 788999999999999998765      677777877554

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=91.20  E-value=0.19  Score=41.38  Aligned_cols=36  Identities=25%  Similarity=0.390  Sum_probs=25.5

Q ss_pred             CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      ..++.+|++. +-.|+||||+|..||..+   |..  ++|.|
T Consensus        17 ~~~~~~I~l~-G~~GsGKST~a~~La~~l---~~~--~i~~d   52 (201)
T 2cdn_A           17 RGSHMRVLLL-GPPGAGKGTQAVKLAEKL---GIP--QISTG   52 (201)
T ss_dssp             CCSCCEEEEE-CCTTSSHHHHHHHHHHHH---TCC--EEEHH
T ss_pred             CCCCeEEEEE-CCCCCCHHHHHHHHHHHh---CCc--EEehh
Confidence            3444566666 778999999999998876   444  45654

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=91.19  E-value=0.35  Score=40.08  Aligned_cols=66  Identities=14%  Similarity=0.053  Sum_probs=44.2

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD---GIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~  231 (340)
                      .+.+.|+|+|+..  .......+..+|.++++.+.+ ..++..+...++.+...   ....+.+|+|+.+..
T Consensus        83 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~  154 (217)
T 2f7s_A           83 KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLP  154 (217)
T ss_dssp             EEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCG
T ss_pred             eEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccc
Confidence            4778999999843  233445677899999998874 44555555555544432   224577999999864

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=91.01  E-value=0.16  Score=43.81  Aligned_cols=39  Identities=28%  Similarity=0.428  Sum_probs=28.0

Q ss_pred             CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      ..++.+|.+. +-.|+||||++..|+..+   +..+.++|.|.
T Consensus        29 ~~~~~~i~l~-G~~GsGKSTla~~L~~~l---~~~~~~~~~D~   67 (253)
T 2p5t_B           29 SKQPIAILLG-GQSGAGKTTIHRIKQKEF---QGNIVIIDGDS   67 (253)
T ss_dssp             CSSCEEEEEE-SCGGGTTHHHHHHHHHHT---TTCCEEECGGG
T ss_pred             ccCCeEEEEE-CCCCCCHHHHHHHHHHhc---CCCcEEEecHH
Confidence            3445555555 778999999999998765   33567778875

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=90.93  E-value=0.2  Score=41.38  Aligned_cols=35  Identities=29%  Similarity=0.348  Sum_probs=26.4

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      ...+|+++ +.-|+||||++..|+..+   |.  -+||+|.
T Consensus        11 ~~~iIglt-G~~GSGKSTva~~L~~~l---g~--~vid~D~   45 (192)
T 2grj_A           11 HHMVIGVT-GKIGTGKSTVCEILKNKY---GA--HVVNVDR   45 (192)
T ss_dssp             CEEEEEEE-CSTTSSHHHHHHHHHHHH---CC--EEEEHHH
T ss_pred             cceEEEEE-CCCCCCHHHHHHHHHHhc---CC--EEEECcH
Confidence            34678887 667899999998888754   54  5588874

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=90.93  E-value=0.18  Score=42.02  Aligned_cols=39  Identities=23%  Similarity=0.248  Sum_probs=26.9

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHH-----HCC-CcEEEEecC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLA-----RLG-FSVVAIDAD   88 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la-----~~g-~~VlliD~D   88 (340)
                      ++.++.|+ +..|+|||+.|..++..++     +.| .++.+..+|
T Consensus         4 ~~mi~l~t-G~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~   48 (199)
T 2r2a_A            4 MAEICLIT-GTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIK   48 (199)
T ss_dssp             CCCEEEEE-CCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCT
T ss_pred             ceeEEEEE-eCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCC
Confidence            44566666 7788999999988876665     557 555555444

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=90.87  E-value=0.2  Score=45.70  Aligned_cols=41  Identities=15%  Similarity=0.151  Sum_probs=32.3

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC--------CCcEEEEecCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARL--------GFSVVAIDADV   89 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~--------g~~VlliD~D~   89 (340)
                      ..++.+.++ +.+|+|||+++..++..+.+.        +..++.+++..
T Consensus        43 ~~~~~vll~-G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~   91 (384)
T 2qby_B           43 EVKFSNLFL-GLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE   91 (384)
T ss_dssp             CCCCEEEEE-ECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH
T ss_pred             CCCCcEEEE-CCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECcc
Confidence            344566665 788999999999999998765        78888888754

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=90.87  E-value=0.84  Score=37.18  Aligned_cols=64  Identities=14%  Similarity=0.067  Sum_probs=45.5

Q ss_pred             CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC--CCceEEEEecccC
Q 047623          167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG--IRDIKMVVNRVRT  230 (340)
Q Consensus       167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~  230 (340)
                      +.+.|+|+|+..  .......+..+|.++++...+ ..+...+...++.+....  ...+.+|.|+.+-
T Consensus        77 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl  145 (199)
T 2p5s_A           77 TVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADI  145 (199)
T ss_dssp             EEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGG
T ss_pred             EEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECccc
Confidence            678999999854  334455677899999998875 556666666666666532  2457899999875

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=90.86  E-value=0.19  Score=43.18  Aligned_cols=43  Identities=14%  Similarity=0.274  Sum_probs=32.1

Q ss_pred             CCCCCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           43 PELAGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        43 ~~~~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      +.....|+|++.|+|+.||.|+     .+|..|+++|.+|.++|-+..
T Consensus        15 ~~~~~~m~k~vlITGas~gIG~-----~la~~l~~~G~~V~~~~r~~~   57 (251)
T 3orf_A           15 VPRGSHMSKNILVLGGSGALGA-----EVVKFFKSKSWNTISIDFREN   57 (251)
T ss_dssp             -------CCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESSCC
T ss_pred             cccccccCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCCcc
Confidence            3445678899999999999887     588889999999999998765

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=90.86  E-value=1.2  Score=35.42  Aligned_cols=65  Identities=15%  Similarity=0.097  Sum_probs=43.9

Q ss_pred             CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHh---cCCCceEEEEecccCC
Q 047623          167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLEC---DGIRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~---~~~~~~~vviN~~~~~  231 (340)
                      +.+.|+|+|+..  .......+..+|.++++...+ ..++..+...++.+..   .....+.+|.|+.+-.
T Consensus        66 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  136 (183)
T 3kkq_A           66 AILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM  136 (183)
T ss_dssp             EEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCS
T ss_pred             EEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCch
Confidence            556779999853  344566678899999998775 4456666666555543   1223577999999854

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=90.78  E-value=0.14  Score=40.99  Aligned_cols=34  Identities=26%  Similarity=0.410  Sum_probs=24.6

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      |+++|+++ +..|+||||++..||..+   |.  .++|.|
T Consensus         3 ~~~~i~l~-G~~GsGKSTl~~~La~~l---~~--~~id~d   36 (173)
T 1kag_A            3 EKRNIFLV-GPMGAGKSTIGRQLAQQL---NM--EFYDSD   36 (173)
T ss_dssp             CCCCEEEE-CCTTSCHHHHHHHHHHHT---TC--EEEEHH
T ss_pred             CCCeEEEE-CCCCCCHHHHHHHHHHHh---CC--CEEecc
Confidence            34567777 667899999998888764   32  456765

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=90.70  E-value=0.25  Score=40.89  Aligned_cols=34  Identities=41%  Similarity=0.467  Sum_probs=25.2

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      |+.+|+++ +..|+||||++..||.    .|..  ++|.|.
T Consensus         1 m~~~i~l~-G~~GsGKST~~~~La~----lg~~--~id~d~   34 (206)
T 1jjv_A            1 MTYIVGLT-GGIGSGKTTIANLFTD----LGVP--LVDADV   34 (206)
T ss_dssp             CCEEEEEE-CSTTSCHHHHHHHHHT----TTCC--EEEHHH
T ss_pred             CCcEEEEE-CCCCCCHHHHHHHHHH----CCCc--ccchHH
Confidence            35678887 6778999999988876    4655  467764

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=90.69  E-value=0.17  Score=44.60  Aligned_cols=36  Identities=25%  Similarity=0.335  Sum_probs=25.9

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      ...+.++++-.|+||||++..|+..+.   .....||.|
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~~~~---~~~~~Is~D   67 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDND   67 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECTH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEech
Confidence            345666668899999999999987542   245667775

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=90.68  E-value=1.4  Score=39.30  Aligned_cols=37  Identities=19%  Similarity=0.237  Sum_probs=27.0

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      ..+-|.++ +..|+|||++|..+|..+  .+.....+++.
T Consensus        44 ~~~~iLL~-GppGtGKT~la~ala~~~--~~~~~~~i~~~   80 (322)
T 1xwi_A           44 PWRGILLF-GPPGTGKSYLAKAVATEA--NNSTFFSISSS   80 (322)
T ss_dssp             CCSEEEEE-SSSSSCHHHHHHHHHHHT--TSCEEEEEECC
T ss_pred             CCceEEEE-CCCCccHHHHHHHHHHHc--CCCcEEEEEhH
Confidence            34566666 778999999999998875  25566666654

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=90.53  E-value=0.26  Score=42.17  Aligned_cols=35  Identities=29%  Similarity=0.443  Sum_probs=28.6

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCc-EEEE
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFS-VVAI   85 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~-Vlli   85 (340)
                      ++.|+|. +-.|+||||.+..|+..|...|.+ |.+.
T Consensus        27 ~~~i~~e-G~~GsGKsT~~~~l~~~l~~~~~~~~~~~   62 (236)
T 3lv8_A           27 AKFIVIE-GLEGAGKSTAIQVVVETLQQNGIDHITRT   62 (236)
T ss_dssp             CCEEEEE-ESTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CeEEEEE-CCCCCCHHHHHHHHHHHHHhcCCCeeeee
Confidence            4566666 566799999999999999999998 5554

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=90.36  E-value=0.34  Score=41.10  Aligned_cols=36  Identities=25%  Similarity=0.408  Sum_probs=29.2

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEE
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAI   85 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vlli   85 (340)
                      .+++.|+|. +-.|+||||++..|+..+.. |.+|+..
T Consensus        24 ~~g~~i~i~-G~~GsGKsT~~~~l~~~l~~-~~~~~~~   59 (229)
T 4eaq_A           24 AMSAFITFE-GPEGSGKTTVINEVYHRLVK-DYDVIMT   59 (229)
T ss_dssp             CCCEEEEEE-CCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred             CCCeEEEEE-cCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence            356777777 66789999999999999988 8888654

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=90.33  E-value=0.7  Score=37.47  Aligned_cols=66  Identities=11%  Similarity=0.090  Sum_probs=46.8

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC--CCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG--IRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~~  231 (340)
                      .+.+.|+|+|+..  .......+..+|.++++.+.+ ..+...+...++.+....  ...+.+|.|+.+-.
T Consensus        74 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~  144 (192)
T 2il1_A           74 KIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCE  144 (192)
T ss_dssp             EEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence            3788999999854  233455677899999998875 456666666666666543  24578999999853

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=90.32  E-value=0.48  Score=38.67  Aligned_cols=66  Identities=17%  Similarity=0.114  Sum_probs=43.5

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc-----CCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD-----GIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~-----~~~~~~vviN~~~~~  231 (340)
                      .+.+.|+|+|+...  ......+..+|.++++...+ ..++..+...++.+...     ....+.+|.|+.+-.
T Consensus        72 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~  145 (208)
T 2yc2_C           72 SVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLP  145 (208)
T ss_dssp             EEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC---
T ss_pred             EEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccc
Confidence            36789999998632  22223456799999998874 45667777777777653     234678999998854

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=90.32  E-value=1.5  Score=34.12  Aligned_cols=66  Identities=14%  Similarity=-0.017  Sum_probs=38.0

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD---GIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~  231 (340)
                      .+.+.++|+++...  ......+..+|.++++...+ ..++..+......+...   ....+.+|.|+.+-.
T Consensus        48 ~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  119 (166)
T 3q72_A           48 EASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV  119 (166)
T ss_dssp             EEEEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCC
T ss_pred             EEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccc
Confidence            36788999998542  23344567799888887664 55677777776666543   124577999999854

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=90.28  E-value=0.35  Score=41.38  Aligned_cols=41  Identities=22%  Similarity=0.260  Sum_probs=31.0

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC-----CCcEEEEecCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARL-----GFSVVAIDADV   89 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~-----g~~VlliD~D~   89 (340)
                      +.+.+|+++ +.-|+||||++..|+..+..-     ..++.+++.|.
T Consensus        23 ~~g~iigI~-G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~   68 (245)
T 2jeo_A           23 MRPFLIGVS-GGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDR   68 (245)
T ss_dssp             CCSEEEEEE-CSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGG
T ss_pred             CCCEEEEEE-CCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCc
Confidence            556789998 677889999999998877321     24677888774

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=90.27  E-value=0.23  Score=40.68  Aligned_cols=65  Identities=9%  Similarity=-0.010  Sum_probs=42.8

Q ss_pred             CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcCC--CceEEEEecccCC
Q 047623          167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDGI--RDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~~--~~~~vviN~~~~~  231 (340)
                      +.+.|+|+|+..  .......+..+|.++++...+ ..++..+...++.+.....  ..+.+|.|+.+-.
T Consensus        82 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~  151 (199)
T 3l0i_B           82 IKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT  151 (199)
T ss_dssp             EEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC
T ss_pred             EEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCC
Confidence            678999999843  223344567899999998865 5567777777777765432  4567888998854

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=90.26  E-value=0.32  Score=43.37  Aligned_cols=38  Identities=29%  Similarity=0.387  Sum_probs=31.8

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      .+.+.++ +..|+||||++..++..+...|.++..++++
T Consensus        37 ~~~lll~-G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~   74 (324)
T 1l8q_A           37 YNPIFIY-GSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD   74 (324)
T ss_dssp             CSSEEEE-CSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred             CCeEEEE-CCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence            3456666 6679999999999999999889999998865

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=90.24  E-value=0.22  Score=39.70  Aligned_cols=35  Identities=29%  Similarity=0.529  Sum_probs=25.0

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      .|++|+++ +-.|+||||++..||..|   |.+  ++|+|.
T Consensus         6 ~~~~i~l~-G~~GsGKSTva~~La~~l---g~~--~id~D~   40 (168)
T 1zuh_A            6 HMQHLVLI-GFMGSGKSSLAQELGLAL---KLE--VLDTDM   40 (168)
T ss_dssp             --CEEEEE-SCTTSSHHHHHHHHHHHH---TCC--EEEHHH
T ss_pred             ccceEEEE-CCCCCCHHHHHHHHHHHh---CCC--EEEChH
Confidence            45788887 667899999999888765   444  467663

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=90.22  E-value=0.41  Score=39.64  Aligned_cols=30  Identities=27%  Similarity=0.333  Sum_probs=26.8

Q ss_pred             CCCCCcHHHHHHHHHHHHHHCCCcEEEEec
Q 047623           58 GKGGVGKTTTTANVGLSLARLGFSVVAIDA   87 (340)
Q Consensus        58 ~kGGvGKTt~a~~LA~~la~~g~~VlliD~   87 (340)
                      +--|+||||.+..|+.+|.++|.+|.+...
T Consensus         7 G~DGsGKsTq~~~L~~~L~~~g~~v~~tre   36 (197)
T 3hjn_A            7 GIDGSGKSTQIQLLAQYLEKRGKKVILKRE   36 (197)
T ss_dssp             CSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence            666899999999999999999999988753

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=90.22  E-value=0.16  Score=45.46  Aligned_cols=41  Identities=27%  Similarity=0.274  Sum_probs=31.1

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHH------------HCC----CcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLA------------RLG----FSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la------------~~g----~~VlliD~D~~   90 (340)
                      .+.++.+. +..|+|||+++.++|...+            +.|    .+|++||++..
T Consensus        97 ~g~i~~i~-G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~  153 (322)
T 2i1q_A           97 SQSVTEFA-GVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGT  153 (322)
T ss_dssp             TTEEEEEE-ESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSC
T ss_pred             CCeEEEEE-CCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCC
Confidence            34555555 7789999999999998643            235    79999999864

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=90.18  E-value=0.24  Score=40.28  Aligned_cols=37  Identities=22%  Similarity=0.367  Sum_probs=25.8

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      +.+.+|++. +..|+||||++..||..   .+.....+|.|
T Consensus         7 ~~g~~i~l~-G~~GsGKSTl~~~La~~---~~~g~i~i~~d   43 (191)
T 1zp6_A            7 LGGNILLLS-GHPGSGKSTIAEALANL---PGVPKVHFHSD   43 (191)
T ss_dssp             CTTEEEEEE-ECTTSCHHHHHHHHHTC---SSSCEEEECTT
T ss_pred             CCCeEEEEE-CCCCCCHHHHHHHHHhc---cCCCeEEEccc
Confidence            445677777 67789999999888764   34445566655

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=90.10  E-value=0.62  Score=38.13  Aligned_cols=65  Identities=11%  Similarity=-0.082  Sum_probs=44.6

Q ss_pred             CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC--CCceEEEEecccCC
Q 047623          167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG--IRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~~  231 (340)
                      +.+.|+|+|+..  .......+..+|.++++...+ ..+...+...++.+....  ...+.+|.|+.+-.
T Consensus        74 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  143 (200)
T 2o52_A           74 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLD  143 (200)
T ss_dssp             EEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGG
T ss_pred             eEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcc
Confidence            678999999832  222345677899999998865 456666666666665432  24578999999853

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=90.08  E-value=0.89  Score=36.55  Aligned_cols=66  Identities=14%  Similarity=0.016  Sum_probs=47.0

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC---CCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG---IRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~---~~~~~vviN~~~~~  231 (340)
                      .+.+.|+|+|+..  .......+..+|.++++.... ..+...+...++.+....   ...+.+|+|+.+-.
T Consensus        63 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~  134 (195)
T 1x3s_A           63 KAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE  134 (195)
T ss_dssp             EEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS
T ss_pred             EEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc
Confidence            3788999999853  344566778899999998875 455666666666665532   24567899999863

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=90.01  E-value=0.56  Score=38.63  Aligned_cols=65  Identities=14%  Similarity=-0.020  Sum_probs=44.5

Q ss_pred             CCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC--CCceEEEEecccCC
Q 047623          167 PDFILIDCPAGID--AGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG--IRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~~  231 (340)
                      +.+.|+|+|+...  ......+..+|.++++.+.+ ..++..+...++.+....  ...+.+|.|+.+-.
T Consensus        75 ~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~  144 (201)
T 2ew1_A           75 VKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA  144 (201)
T ss_dssp             EEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred             EEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence            6789999998542  22334557799999998864 556666666666665532  23567889998853

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=90.00  E-value=0.4  Score=42.28  Aligned_cols=40  Identities=23%  Similarity=0.242  Sum_probs=32.8

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      ...+.++ +..|+|||++|..+|..+...+.++..+|+...
T Consensus        47 ~~~~ll~-G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~   86 (311)
T 4fcw_A           47 IGSFLFL-GPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY   86 (311)
T ss_dssp             SEEEEEE-SCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGC
T ss_pred             ceEEEEE-CCCCcCHHHHHHHHHHHHcCCCcceEEeecccc
Confidence            3466666 667899999999999999887778999988754

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=89.95  E-value=0.81  Score=36.77  Aligned_cols=66  Identities=9%  Similarity=0.067  Sum_probs=47.2

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCCh-hhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPDI-TSLRDADRVTGLLECD---GIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~  231 (340)
                      .+.+.|+|+|+..  .......+..+|.++++.+.+. .++..+...+..+...   ....+.+|.|+.+-.
T Consensus        59 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~  130 (187)
T 1zj6_A           59 NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK  130 (187)
T ss_dssp             TEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTST
T ss_pred             CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCc
Confidence            3778999999853  4445667788999999988754 4677777766666543   335678999999864

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=89.75  E-value=1.3  Score=34.58  Aligned_cols=66  Identities=14%  Similarity=0.015  Sum_probs=42.6

Q ss_pred             CCCEEEEcCCCCCCH---HHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC---CCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGIDA---GFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG---IRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~~---~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~---~~~~~vviN~~~~~  231 (340)
                      .+.+.++|+++....   .....+..+|.++++...+ ..++..+...+..+....   ...+.+|.|+.+-.
T Consensus        50 ~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  122 (169)
T 3q85_A           50 EVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA  122 (169)
T ss_dssp             EEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCG
T ss_pred             EEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchh
Confidence            377889999985432   2333466799988888775 456666666666665432   24677999999854

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=89.73  E-value=0.32  Score=42.70  Aligned_cols=35  Identities=31%  Similarity=0.401  Sum_probs=25.8

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      +.+.+|+++ +..|+||||+|..|+.    .|..  +||+|.
T Consensus        73 ~~~~iI~I~-G~~GSGKSTva~~La~----lg~~--~id~D~  107 (281)
T 2f6r_A           73 SGLYVLGLT-GISGSGKSSVAQRLKN----LGAY--IIDSDH  107 (281)
T ss_dssp             TTCEEEEEE-ECTTSCHHHHHHHHHH----HTCE--EEEHHH
T ss_pred             CCCEEEEEE-CCCCCCHHHHHHHHHH----CCCc--EEehhH
Confidence            445778887 6678999999999983    3654  477763

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=89.63  E-value=2  Score=33.82  Aligned_cols=65  Identities=11%  Similarity=0.083  Sum_probs=44.3

Q ss_pred             CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCCh-hhHHHHHHHHHHH-Hhc--CCCceEEEEecccCC
Q 047623          167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPDI-TSLRDADRVTGLL-ECD--GIRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l-~~~--~~~~~~vviN~~~~~  231 (340)
                      +.+.|+|+|+..  .......+..+|.++++...+. .++..+...++.+ ...  ....+.+|+|+.+-.
T Consensus        57 ~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  127 (181)
T 2fn4_A           57 ARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE  127 (181)
T ss_dssp             EEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGG
T ss_pred             EEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence            678899999843  3345566778999998887754 4566666655555 222  224678999999854

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=89.61  E-value=0.82  Score=38.10  Aligned_cols=65  Identities=12%  Similarity=0.003  Sum_probs=44.4

Q ss_pred             CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC--CCceEEEEecccCC
Q 047623          167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG--IRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~vviN~~~~~  231 (340)
                      +.+.|+|+|+..  .......+..+|.+++|...+ ..+...+...++.+....  ...+.+|.|+.+-.
T Consensus        62 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~  131 (223)
T 3cpj_B           62 IKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLA  131 (223)
T ss_dssp             EEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGG
T ss_pred             EEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccc
Confidence            678999999853  223345567899999998874 456677777777766542  23577889999753

>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*

Probab=89.59  E-value=0.58  Score=40.45  Aligned_cols=43  Identities=26%  Similarity=0.407  Sum_probs=36.7

Q ss_pred             CCCEEEEEEc-CCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           48 ETPRVVVITS-GKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        48 ~~~~iI~v~s-~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      ..+|-|.|+| --.|.||-.+|++|+..|..+|++|-++.+||.
T Consensus        21 ~~~KyIfVTGGVvS~lGKGi~aaSlg~lLk~~G~~Vt~~K~DPY   64 (295)
T 2vo1_A           21 QSMKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPY   64 (295)
T ss_dssp             CCCEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEEEEEECS
T ss_pred             ccceEEEEcCCcccccccHHHHHHHHHHHHHCCCcceeeecccc
Confidence            3456666665 567999999999999999999999999999985

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=89.56  E-value=0.53  Score=42.01  Aligned_cols=43  Identities=28%  Similarity=0.254  Sum_probs=33.7

Q ss_pred             CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC-C-CcEEEEecCCC
Q 047623           47 GETPRVVVITSGKGGVGKTTTTANVGLSLARL-G-FSVVAIDADVG   90 (340)
Q Consensus        47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~-g-~~VlliD~D~~   90 (340)
                      .+.+.+|++. +..|+||||++..|+..+... | .++.++..|..
T Consensus        87 ~~~g~ivgI~-G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~  131 (312)
T 3aez_A           87 RPVPFIIGVA-GSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF  131 (312)
T ss_dssp             SCCCEEEEEE-CCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred             CCCCEEEEEE-CCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence            3566788887 677899999999999988754 4 57888877753

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=89.55  E-value=0.38  Score=46.86  Aligned_cols=53  Identities=32%  Similarity=0.300  Sum_probs=38.9

Q ss_pred             CCCChhhHHHHHhhCCCCCCCCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEe
Q 047623           26 PFSSKSSIQSVLQWNRKPELAGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAID   86 (340)
Q Consensus        26 ~~~~~~~~~~~l~~~~~~~~~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD   86 (340)
                      ++....+.+..+.....       .+.+.| .+..|+||||++..++..+.+.|.+|+++-
T Consensus       187 ~~~L~~~Q~~Av~~~~~-------~~~~~I-~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A  239 (574)
T 3e1s_A          187 RKGLSEEQASVLDQLAG-------HRLVVL-TGGPGTGKSTTTKAVADLAESLGLEVGLCA  239 (574)
T ss_dssp             TTTCCHHHHHHHHHHTT-------CSEEEE-ECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCCCHHHHHHHHHHHh-------CCEEEE-EcCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence            44455666666665431       234444 488899999999999999999999999863

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=89.51  E-value=0.31  Score=39.93  Aligned_cols=35  Identities=34%  Similarity=0.539  Sum_probs=25.6

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      ..+.+|+++ +..|+||||++..||..    |..  ++|.|.
T Consensus         6 ~~~~~I~i~-G~~GsGKST~~~~La~~----g~~--~id~d~   40 (203)
T 1uf9_A            6 KHPIIIGIT-GNIGSGKSTVAALLRSW----GYP--VLDLDA   40 (203)
T ss_dssp             CCCEEEEEE-ECTTSCHHHHHHHHHHT----TCC--EEEHHH
T ss_pred             cCceEEEEE-CCCCCCHHHHHHHHHHC----CCE--EEcccH
Confidence            445678777 56789999999888774    544  577773

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=89.48  E-value=0.69  Score=36.98  Aligned_cols=65  Identities=12%  Similarity=-0.085  Sum_probs=44.2

Q ss_pred             CCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc--CCCceEEEEecccCC
Q 047623          167 PDFILIDCPAGID--AGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD--GIRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~--~~~~~~vviN~~~~~  231 (340)
                      +.+.|+|+|+...  ......+..+|.++++...+ ..+...+...++.+...  ....+.+|.|+.+-.
T Consensus        59 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  128 (186)
T 2bme_A           59 VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLD  128 (186)
T ss_dssp             EEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccc
Confidence            6789999998542  22344556799999998865 45666666666666543  224678999999863

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=89.36  E-value=0.28  Score=39.81  Aligned_cols=32  Identities=31%  Similarity=0.462  Sum_probs=23.4

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      ++|++. +-.|+||||+|..||..+   |.  ..+|.|
T Consensus         4 ~~I~l~-G~~GsGKsT~a~~L~~~~---~~--~~i~~d   35 (196)
T 1tev_A            4 LVVFVL-GGPGAGKGTQCARIVEKY---GY--THLSAG   35 (196)
T ss_dssp             EEEEEE-CCTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred             eEEEEE-CCCCCCHHHHHHHHHHHh---CC--eEEeHH
Confidence            456665 778999999999988765   43  346665

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=89.34  E-value=0.36  Score=41.05  Aligned_cols=36  Identities=28%  Similarity=0.289  Sum_probs=26.7

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHC----CCcEEEEe
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARL----GFSVVAID   86 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~----g~~VlliD   86 (340)
                      ++.|+|. +-.|+||||.+..|+..|...    |.+|.+..
T Consensus        25 g~~I~~e-G~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r   64 (227)
T 3v9p_A           25 GKFITFE-GIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR   64 (227)
T ss_dssp             CCEEEEE-CCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred             CeEEEEE-CCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence            4556665 777899999999999999988    99987653

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=89.32  E-value=5.2  Score=36.24  Aligned_cols=35  Identities=31%  Similarity=0.393  Sum_probs=27.2

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEe
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARL-GFSVVAID   86 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~-g~~VlliD   86 (340)
                      .+++|+ +..|+||||+...++..+... |.+++.++
T Consensus       124 g~i~I~-GptGSGKTTlL~~l~g~~~~~~~~~i~t~e  159 (356)
T 3jvv_A          124 GLVLVT-GPTGSGKSTTLAAMLDYLNNTKYHHILTIE  159 (356)
T ss_dssp             EEEEEE-CSTTSCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred             CEEEEE-CCCCCCHHHHHHHHHhcccCCCCcEEEEcc
Confidence            467777 677899999999999888764 66666554

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=89.31  E-value=2  Score=34.07  Aligned_cols=65  Identities=11%  Similarity=-0.021  Sum_probs=44.9

Q ss_pred             CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623          167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD---GIRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~  231 (340)
                      +.+.|+|+|+..  .......+..+|.++++...+ ..+...+....+.+...   ....+.+|.|+.+..
T Consensus        52 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~  122 (189)
T 4dsu_A           52 CLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLP  122 (189)
T ss_dssp             EEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSS
T ss_pred             EEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCc
Confidence            667889999943  445566678899988888765 45566666666666542   224678999999864

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=89.23  E-value=0.27  Score=40.03  Aligned_cols=33  Identities=18%  Similarity=0.461  Sum_probs=24.4

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      +++|++. +-.|+||||++..||..+   |..  .+|.|
T Consensus         9 ~~~I~l~-G~~GsGKsT~~~~La~~l---~~~--~i~~d   41 (196)
T 2c95_A            9 TNIIFVV-GGPGSGKGTQCEKIVQKY---GYT--HLSTG   41 (196)
T ss_dssp             SCEEEEE-ECTTSSHHHHHHHHHHHH---CCE--EEEHH
T ss_pred             CCEEEEE-CCCCCCHHHHHHHHHHHh---CCe--EEcHH
Confidence            4567776 667899999999998866   433  56665

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=89.19  E-value=0.22  Score=39.54  Aligned_cols=27  Identities=33%  Similarity=0.503  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEE
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVV   83 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vl   83 (340)
                      +|++. +-.|+||||+|..|    .+.|..++
T Consensus         3 ~I~l~-G~~GsGKsT~a~~L----~~~g~~~i   29 (179)
T 3lw7_A            3 VILIT-GMPGSGKSEFAKLL----KERGAKVI   29 (179)
T ss_dssp             EEEEE-CCTTSCHHHHHHHH----HHTTCEEE
T ss_pred             EEEEE-CCCCCCHHHHHHHH----HHCCCcEE
Confidence            45555 78899999999888    55677653

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=89.06  E-value=0.41  Score=40.25  Aligned_cols=35  Identities=37%  Similarity=0.515  Sum_probs=28.3

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCC-cEEEE
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGF-SVVAI   85 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~-~Vlli   85 (340)
                      ++.|+|- +-.|+||||.+..|+.+|...|+ .|.+.
T Consensus         3 g~~i~~e-G~~gsGKsT~~~~l~~~l~~~~~~~v~~~   38 (213)
T 4tmk_A            3 SKYIVIE-GLEGAGKTTARNVVVETLEQLGIRDMVFT   38 (213)
T ss_dssp             CCEEEEE-ECTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CeEEEEE-CCCCCCHHHHHHHHHHHHHHcCCCcceee
Confidence            4567766 56688999999999999999998 66543

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=88.83  E-value=0.7  Score=39.32  Aligned_cols=42  Identities=17%  Similarity=0.115  Sum_probs=32.9

Q ss_pred             CCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           46 AGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      ...++++..++ +.=|.||||.+..++..+..+|++|+++..-
T Consensus        15 ~~~~g~l~v~~-G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~   56 (234)
T 2orv_A           15 SKTRGQIQVIL-GPMFSGKSTELMRRVRRFQIAQYKCLVIKYA   56 (234)
T ss_dssp             ---CCEEEEEE-CCTTSCHHHHHHHHHHHHHTTTCCEEEEEET
T ss_pred             CCCceEEEEEE-CCCCCcHHHHHHHHHHHHHHCCCeEEEEeec
Confidence            34567776666 5557899999999999999999999999844

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=88.83  E-value=0.36  Score=45.71  Aligned_cols=66  Identities=21%  Similarity=0.347  Sum_probs=43.3

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhH-------HHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSL-------RDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      .+.+.|+|||+...  ..+...+..+|.+|+++..+...+       ....+.+..+...+.+.+.+++|+++..
T Consensus       120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~  194 (467)
T 1r5b_A          120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEP  194 (467)
T ss_dssp             SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTST
T ss_pred             CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCC
Confidence            46789999999643  233445577999999998876533       2455555666666777788999999863

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=88.77  E-value=0.35  Score=40.43  Aligned_cols=33  Identities=21%  Similarity=0.292  Sum_probs=23.6

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      +..|++. +-.|+||||++..||..+   |.  ..+|.|
T Consensus         4 ~~~I~l~-G~~GsGKsT~a~~La~~l---~~--~~i~~d   36 (220)
T 1aky_A            4 SIRMVLI-GPPGAGKGTQAPNLQERF---HA--AHLATG   36 (220)
T ss_dssp             CCEEEEE-CCTTSSHHHHHHHHHHHH---CC--EEEEHH
T ss_pred             CcEEEEE-CCCCCCHHHHHHHHHHHc---Cc--eEEehh
Confidence            3456666 667999999999998876   33  346654

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=88.60  E-value=0.36  Score=38.98  Aligned_cols=33  Identities=27%  Similarity=0.515  Sum_probs=23.6

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      +.+|++. +-.|+||||++..||..+   |.  ..+|.|
T Consensus         4 g~~I~l~-G~~GsGKST~~~~La~~l---~~--~~i~~d   36 (186)
T 3cm0_A            4 GQAVIFL-GPPGAGKGTQASRLAQEL---GF--KKLSTG   36 (186)
T ss_dssp             EEEEEEE-CCTTSCHHHHHHHHHHHH---TC--EEECHH
T ss_pred             CeEEEEE-CCCCCCHHHHHHHHHHHh---CC--eEecHH
Confidence            3456666 778999999999998765   43  345654

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=88.59  E-value=0.24  Score=40.54  Aligned_cols=33  Identities=21%  Similarity=0.365  Sum_probs=24.5

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      +++|++. +..|+||||+|..||..+   |  ...+|.|
T Consensus        12 ~~~I~l~-G~~GsGKsT~a~~L~~~l---~--~~~i~~d   44 (199)
T 2bwj_A           12 CKIIFII-GGPGSGKGTQCEKLVEKY---G--FTHLSTG   44 (199)
T ss_dssp             SCEEEEE-ECTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred             CCEEEEE-CCCCCCHHHHHHHHHHHh---C--CeEEcHH
Confidence            4567776 678899999999998876   3  3456665

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=88.58  E-value=0.33  Score=41.87  Aligned_cols=36  Identities=36%  Similarity=0.516  Sum_probs=31.2

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      |.|++.|+|+.+|.|+.     +|..|++.|.+|++.|.+.
T Consensus         1 MnK~vlVTGas~GIG~a-----ia~~la~~Ga~V~~~~~~~   36 (247)
T 3ged_A            1 MNRGVIVTGGGHGIGKQ-----ICLDFLEAGDKVCFIDIDE   36 (247)
T ss_dssp             -CCEEEEESTTSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEecCCCHHHHH-----HHHHHHHCCCEEEEEeCCH
Confidence            45899999999999984     7889999999999999774

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=88.54  E-value=0.37  Score=40.29  Aligned_cols=41  Identities=29%  Similarity=0.352  Sum_probs=31.1

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHH------CCCcEEEEecCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLAR------LGFSVVAIDADV   89 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~------~g~~VlliD~D~   89 (340)
                      +.+.++++. +..|+||||++..++..+..      .+.+++.++...
T Consensus        23 ~~G~~~~l~-G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~   69 (231)
T 4a74_A           23 ETQAITEVF-GEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN   69 (231)
T ss_dssp             ESSEEEEEE-ESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred             CCCcEEEEE-CCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence            445777777 67789999999999987654      245688888764

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=88.54  E-value=0.21  Score=38.94  Aligned_cols=36  Identities=17%  Similarity=0.027  Sum_probs=27.6

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      |.++ +..|+|||++|..++....+.+.+.. +++...
T Consensus        27 vll~-G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~   62 (145)
T 3n70_A           27 VWLY-GAPGTGRMTGARYLHQFGRNAQGEFV-YRELTP   62 (145)
T ss_dssp             EEEE-SSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCT
T ss_pred             EEEE-CCCCCCHHHHHHHHHHhCCccCCCEE-EECCCC
Confidence            4455 77899999999999887766677777 777643

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=88.35  E-value=0.31  Score=45.26  Aligned_cols=65  Identities=15%  Similarity=0.191  Sum_probs=44.8

Q ss_pred             CCEEEEcCCCCCCH--HHHHHHhcCCeEEEEeCCChhh-HHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          167 PDFILIDCPAGIDA--GFITAITPANEAVLVTTPDITS-LRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~~~--~~~~~l~~ad~viiv~~~~~~s-~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      +.+.|+|+|+....  .....+..+|.+++++..+... ...+.+.+..+...+...+.+++|+++..
T Consensus        83 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~  150 (410)
T 1kk1_A           83 RRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELV  150 (410)
T ss_dssp             EEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGS
T ss_pred             cEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCC
Confidence            67899999995422  2233446689999999887432 44455555556656667788999999864

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=88.23  E-value=0.38  Score=43.19  Aligned_cols=36  Identities=22%  Similarity=0.339  Sum_probs=27.0

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      |.++|.++ +-.|+||||+|..||..+     ...+||+|..
T Consensus         4 m~~~i~i~-GptGsGKTtla~~La~~l-----~~~iis~Ds~   39 (323)
T 3crm_A            4 LPPAIFLM-GPTAAGKTDLAMALADAL-----PCELISVDSA   39 (323)
T ss_dssp             CCEEEEEE-CCTTSCHHHHHHHHHHHS-----CEEEEEECTT
T ss_pred             CCcEEEEE-CCCCCCHHHHHHHHHHHc-----CCcEEeccch
Confidence            44566665 678999999999998754     3677888853

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=88.14  E-value=0.42  Score=39.95  Aligned_cols=24  Identities=33%  Similarity=0.498  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHH
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSL   75 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~l   75 (340)
                      .+|+++ +..|+||||++..|+..+
T Consensus         6 ~~i~i~-G~~GsGKSTl~~~L~~~~   29 (227)
T 1cke_A            6 PVITID-GPSGAGKGTLCKAMAEAL   29 (227)
T ss_dssp             CEEEEE-CCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEE-CCCCCCHHHHHHHHHHHh
Confidence            578887 677899999999888754

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=88.13  E-value=0.44  Score=43.86  Aligned_cols=45  Identities=27%  Similarity=0.242  Sum_probs=33.6

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhcc
Q 047623           53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLL   98 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~   98 (340)
                      ++|+ +..|+||||++..++..+...|.++.++|-+.....+...+
T Consensus        38 ~~i~-G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   82 (392)
T 4ag6_A           38 WTIL-AKPGAGKSFTAKMLLLREYMQGSRVIIIDPEREYKEMCRKL   82 (392)
T ss_dssp             EEEE-CCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCCSHHHHHHT
T ss_pred             eEEE-cCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcCHHHHHHHc
Confidence            4455 67789999999999998888899999998765433333333

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=88.07  E-value=0.66  Score=40.78  Aligned_cols=39  Identities=31%  Similarity=0.473  Sum_probs=28.7

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCC----cEEEEec
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGF----SVVAIDA   87 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~----~VlliD~   87 (340)
                      +....+.++ +..|+|||++|..+|..+...+.    ++..+++
T Consensus        65 ~~~~~vll~-G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~  107 (309)
T 3syl_A           65 TPTLHMSFT-GNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR  107 (309)
T ss_dssp             CCCCEEEEE-ECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred             CCCceEEEE-CCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence            334456666 67899999999999999987654    5555553

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=88.04  E-value=1.2  Score=38.63  Aligned_cols=89  Identities=15%  Similarity=0.091  Sum_probs=55.7

Q ss_pred             CCCEEEEcCCCCCCHH------------HHHH--HhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGIDAG------------FITA--ITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~~~------------~~~~--l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      .+.+.|+|+|+.....            ....  ...+|.++++++...  ......+...+.+.+. .+.+|+|+.+..
T Consensus        49 ~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~-p~ivv~NK~Dl~  125 (274)
T 3i8s_A           49 DHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQLLELGI-PCIVALNMLDIA  125 (274)
T ss_dssp             SCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTC-CEEEEEECHHHH
T ss_pred             CCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCC-CEEEEEECccch
Confidence            3678999999943211            1222  257999999998754  4444555555655544 477999998853


Q ss_pred             cccccccccHHHHHHHhCCceeEEecC
Q 047623          232 MIKGEDMMSVLDIQEMLGLALLGVIPE  258 (340)
Q Consensus       232 ~~~~~~~~~~~~i~~~~g~~v~~~Ip~  258 (340)
                      ... ........+.+.+|.+++.+-..
T Consensus       126 ~~~-~~~~~~~~l~~~lg~~~i~~SA~  151 (274)
T 3i8s_A          126 EKQ-NIRIEIDALSARLGCPVIPLVST  151 (274)
T ss_dssp             HHT-TEEECHHHHHHHHTSCEEECCCG
T ss_pred             hhh-hHHHHHHHHHHhcCCCEEEEEcC
Confidence            211 11234677888899887754443

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=88.02  E-value=0.98  Score=33.06  Aligned_cols=36  Identities=19%  Similarity=0.374  Sum_probs=27.6

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCC-CcEEEEecCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLG-FSVVAIDADV   89 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g-~~VlliD~D~   89 (340)
                      .+++.|+|+|. |++|..     ++..|.+.| ++|.++|-++
T Consensus         3 ~~~~~v~I~G~-G~iG~~-----~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            3 AMRWNICVVGA-GKIGQM-----IAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             TTCEEEEEECC-SHHHHH-----HHHHHHHCSSEEEEEEESCH
T ss_pred             CCcCeEEEECC-CHHHHH-----HHHHHHhCCCceEEEEeCCH
Confidence            34578889988 888764     667778888 8999988764

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=87.86  E-value=0.19  Score=45.20  Aligned_cols=34  Identities=32%  Similarity=0.397  Sum_probs=27.7

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEec
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDA   87 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~   87 (340)
                      +.++ +..+..|+|||++|.++|..   .|.+|+++++
T Consensus       123 gsvi-LI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~  156 (331)
T 2vhj_A          123 SGMV-IVTGKGNSGKTPLVHALGEA---LGGKDKYATV  156 (331)
T ss_dssp             SEEE-EEECSCSSSHHHHHHHHHHH---HHTTSCCEEE
T ss_pred             CcEE-EEEcCCCCCHHHHHHHHHHh---CCCCEEEEEe
Confidence            3445 45699999999999999886   5778999988

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=87.81  E-value=2.8  Score=33.77  Aligned_cols=80  Identities=11%  Similarity=0.106  Sum_probs=51.3

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc---CCCceEEEEecccCCcccccccc
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD---GIRDIKMVVNRVRTDMIKGEDMM  239 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~~~~~~~~~  239 (340)
                      .+.+.|+|+|+..  .......+..+|.++++.+.+ ..++..+...+..+...   ....+.+|.|+.+-...     .
T Consensus        72 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~-----~  146 (192)
T 2b6h_A           72 NICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNA-----M  146 (192)
T ss_dssp             TEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC-----C
T ss_pred             CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC-----C
Confidence            4788999999853  344556778899999998875 44677776666655432   23467899999986431     1


Q ss_pred             cHHHHHHHhCC
Q 047623          240 SVLDIQEMLGL  250 (340)
Q Consensus       240 ~~~~i~~~~g~  250 (340)
                      ...++.+.++.
T Consensus       147 ~~~~i~~~~~~  157 (192)
T 2b6h_A          147 PVSELTDKLGL  157 (192)
T ss_dssp             CHHHHHHHTTG
T ss_pred             CHHHHHHHhCc
Confidence            24455555553

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=87.80  E-value=0.24  Score=39.95  Aligned_cols=30  Identities=37%  Similarity=0.373  Sum_probs=17.7

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEE
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVV   83 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vl   83 (340)
                      +++|.+. +-.|+||||+|..||..+   |..++
T Consensus         5 ~~~I~l~-G~~GsGKST~a~~La~~l---~~~~i   34 (183)
T 2vli_A            5 SPIIWIN-GPFGVGKTHTAHTLHERL---PGSFV   34 (183)
T ss_dssp             CCEEEEE-CCC----CHHHHHHHHHS---TTCEE
T ss_pred             CeEEEEE-CCCCCCHHHHHHHHHHhc---CCCEE
Confidence            3466665 778999999999887654   55544

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=87.74  E-value=0.41  Score=43.48  Aligned_cols=42  Identities=26%  Similarity=0.285  Sum_probs=32.3

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC------CCcEEEEecCCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARL------GFSVVAIDADVG   90 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~------g~~VlliD~D~~   90 (340)
                      +.+.++.+. +..|+||||++..++..++..      |-+|++||....
T Consensus       129 ~~G~i~~I~-G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~  176 (349)
T 1pzn_A          129 ETQAITEVF-GEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT  176 (349)
T ss_dssp             ESSEEEEEE-ESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred             CCCeEEEEE-CCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence            456778877 577899999999999887432      358899998653

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=87.74  E-value=0.38  Score=46.51  Aligned_cols=25  Identities=16%  Similarity=0.282  Sum_probs=20.7

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHH
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGL   73 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~   73 (340)
                      +..++|+|+ +-||+||||+|..++.
T Consensus       150 ~~~~vv~I~-G~gGvGKTtLA~~v~~  174 (549)
T 2a5y_B          150 LDSFFLFLH-GRAGSGKSVIASQALS  174 (549)
T ss_dssp             SSSEEEEEE-CSTTSSHHHHHHHHHH
T ss_pred             CCceEEEEE-cCCCCCHHHHHHHHHH
Confidence            345788888 7799999999998885

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=87.73  E-value=0.54  Score=43.62  Aligned_cols=64  Identities=20%  Similarity=0.199  Sum_probs=43.9

Q ss_pred             CCEEEEcCCCCCCHHHHHH---HhcCCeEEEEeCCChhh-HHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          167 PDFILIDCPAGIDAGFITA---ITPANEAVLVTTPDITS-LRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~~~~~~~~---l~~ad~viiv~~~~~~s-~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      +.+.|+|+|+... .....   +..+|.+++++..+... ...+.+.+..+...+...+.+++|+.+..
T Consensus        81 ~~i~iiDtPGh~~-f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~  148 (408)
T 1s0u_A           81 RRVSFVDSPGHET-LMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLV  148 (408)
T ss_dssp             EEEEEEECSSHHH-HHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSS
T ss_pred             cEEEEEECCCHHH-HHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCC
Confidence            6789999999532 22222   34579999999886432 44445555556666666788999999864

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=87.66  E-value=1  Score=36.20  Aligned_cols=66  Identities=12%  Similarity=0.035  Sum_probs=46.1

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc-----CCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD-----GIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~-----~~~~~~vviN~~~~~  231 (340)
                      .+.+.|+|+|+..  .......+..+|.++++.+.+ ..++..+...+..+...     ....+.+|.|+.+-.
T Consensus        66 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  139 (190)
T 2h57_A           66 SLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLR  139 (190)
T ss_dssp             SCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTST
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcc
Confidence            3788999999844  333345667899999998875 44577766666555443     234678999999864

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=87.59  E-value=1.9  Score=33.96  Aligned_cols=66  Identities=11%  Similarity=0.044  Sum_probs=40.6

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc------CCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD------GIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~------~~~~~~vviN~~~~~  231 (340)
                      .+.+.|+|+|+...  ......+..+|.++++...+ ..+...+...++.+...      ....+.+|.|+.+-.
T Consensus        57 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~  131 (182)
T 1ky3_A           57 VATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAE  131 (182)
T ss_dssp             CEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSC
T ss_pred             EEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccc
Confidence            46789999998532  22334456799999998764 45666666666555432      224678999999863

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=87.50  E-value=0.52  Score=42.80  Aligned_cols=38  Identities=21%  Similarity=0.148  Sum_probs=31.3

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEecCCC
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARL-GFSVVAIDADVG   90 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~-g~~VlliD~D~~   90 (340)
                      .+.++ +..|+||||++..++..+... +..++.+++...
T Consensus        46 ~~li~-G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~   84 (389)
T 1fnn_A           46 RATLL-GRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY   84 (389)
T ss_dssp             EEEEE-CCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC
T ss_pred             eEEEE-CCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccC
Confidence            66666 778999999999999988777 688888887654

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=87.27  E-value=0.45  Score=38.29  Aligned_cols=25  Identities=32%  Similarity=0.415  Sum_probs=19.6

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHH
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSL   75 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~l   75 (340)
                      ++.|.++ +-.|+||||++..||..+
T Consensus        11 ~~~i~i~-G~~GsGKst~~~~l~~~~   35 (180)
T 3iij_A           11 LPNILLT-GTPGVGKTTLGKELASKS   35 (180)
T ss_dssp             CCCEEEE-CSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEE-eCCCCCHHHHHHHHHHHh
Confidence            3456655 778999999999998776

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=87.23  E-value=0.51  Score=42.58  Aligned_cols=36  Identities=19%  Similarity=0.427  Sum_probs=26.9

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      +.++|.++ +-.|+||||++..||..+     ..-+||+|..
T Consensus        39 ~~~lIvI~-GPTgsGKTtLa~~LA~~l-----~~eiIs~Ds~   74 (339)
T 3a8t_A           39 KEKLLVLM-GATGTGKSRLSIDLAAHF-----PLEVINSDKM   74 (339)
T ss_dssp             CCEEEEEE-CSTTSSHHHHHHHHHTTS-----CEEEEECCSS
T ss_pred             CCceEEEE-CCCCCCHHHHHHHHHHHC-----CCcEEccccc
Confidence            34566666 667899999999998743     4678999964

>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A

Probab=87.21  E-value=0.99  Score=42.07  Aligned_cols=49  Identities=20%  Similarity=0.285  Sum_probs=38.1

Q ss_pred             hhHHHHHhhCCCCCCCCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEE
Q 047623           31 SSIQSVLQWNRKPELAGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAI   85 (340)
Q Consensus        31 ~~~~~~l~~~~~~~~~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vlli   85 (340)
                      ..+++.++.--.+.   ...++|+|+|+   .||||++.-|+..|...|++|.++
T Consensus        23 ~~~~~~l~~lg~p~---~~~~vI~VtGT---nGKtTT~~~l~~iL~~~G~~vg~~   71 (428)
T 1jbw_A           23 RRILTLLHALGNPQ---QQGRYIHVTGT---NGKGSAANAIAHVLEASGLTVGLY   71 (428)
T ss_dssp             HHHHHHHHHTTCGG---GSSCEEEEECS---SCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             HHHHHHHHHcCCch---hcCcEEEEECC---CChHHHHHHHHHHHHHCCCCEEEE
Confidence            45666666544332   34579999975   589999999999999999999987

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=87.19  E-value=0.53  Score=39.81  Aligned_cols=33  Identities=21%  Similarity=0.308  Sum_probs=23.7

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      +..|.+. +..|+||||+|..||..+   |  ...+|.|
T Consensus        16 ~~~I~l~-G~~GsGKsT~a~~La~~l---~--~~~i~~d   48 (233)
T 1ak2_A           16 GVRAVLL-GPPGAGKGTQAPKLAKNF---C--VCHLATG   48 (233)
T ss_dssp             CCEEEEE-CCTTSSHHHHHHHHHHHH---T--CEEEEHH
T ss_pred             CeEEEEE-CCCCCCHHHHHHHHHHHh---C--CceecHH
Confidence            3456666 667999999999999876   3  3455654

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=87.09  E-value=0.55  Score=41.99  Aligned_cols=33  Identities=33%  Similarity=0.431  Sum_probs=24.2

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      ++|+| ++-.|+||||+|..||..+     ..-+|.+|.
T Consensus         4 ~~i~i-~GptgsGKt~la~~La~~~-----~~~iis~Ds   36 (322)
T 3exa_A            4 KLVAI-VGPTAVGKTKTSVMLAKRL-----NGEVISGDS   36 (322)
T ss_dssp             EEEEE-ECCTTSCHHHHHHHHHHTT-----TEEEEECCG
T ss_pred             cEEEE-ECCCcCCHHHHHHHHHHhC-----ccceeecCc
Confidence            45554 5777899999999998754     456777774

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=87.07  E-value=4.2  Score=32.92  Aligned_cols=65  Identities=11%  Similarity=-0.003  Sum_probs=44.1

Q ss_pred             CCEEEEcCCCCCC--H-HHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcC---CCceEEEEecccCC
Q 047623          167 PDFILIDCPAGID--A-GFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDG---IRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~~--~-~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~---~~~~~vviN~~~~~  231 (340)
                      +.+.|+|+++...  . .....+..+|.++++...+ ..++..+...+..+....   ...+.+|.|+.+-.
T Consensus        72 ~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~  143 (195)
T 3cbq_A           72 VTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLA  143 (195)
T ss_dssp             EEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCT
T ss_pred             EEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhcc
Confidence            6778999988643  2 3334567799999888774 556666766666665421   24577899999854

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=87.07  E-value=0.86  Score=40.61  Aligned_cols=36  Identities=25%  Similarity=0.376  Sum_probs=25.9

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      .+.++|+| ++-.|+||||+|..||..+     ..-+|.+|.
T Consensus         8 ~~~~~i~i-~GptgsGKt~la~~La~~~-----~~~iis~Ds   43 (316)
T 3foz_A            8 SLPKAIFL-MGPTASGKTALAIELRKIL-----PVELISVDS   43 (316)
T ss_dssp             CCCEEEEE-ECCTTSCHHHHHHHHHHHS-----CEEEEECCT
T ss_pred             CCCcEEEE-ECCCccCHHHHHHHHHHhC-----CCcEEeccc
Confidence            34455555 5777899999999998764     355777775

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=87.05  E-value=0.29  Score=40.31  Aligned_cols=35  Identities=23%  Similarity=0.336  Sum_probs=24.9

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      +.++ +..|+|||+++..++..+...+..+.++..+
T Consensus        41 ~ll~-G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~   75 (226)
T 2chg_A           41 LLFS-GPPGTGKTATAIALARDLFGENWRDNFIEMN   75 (226)
T ss_dssp             EEEE-CSTTSSHHHHHHHHHHHHHGGGGGGGEEEEE
T ss_pred             EEEE-CCCCCCHHHHHHHHHHHHhccccccceEEec
Confidence            5555 7789999999999999887655443333333

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=87.05  E-value=3.3  Score=31.94  Aligned_cols=66  Identities=8%  Similarity=0.030  Sum_probs=45.7

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD---GIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~  231 (340)
                      .+.+.|+|+|+...  ......+..+|.++++.+.+ ..++......+..+...   ....+.+|.|+.+-.
T Consensus        43 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  114 (164)
T 1r8s_A           43 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP  114 (164)
T ss_dssp             SCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred             CEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCc
Confidence            47889999998643  33344567899999998874 45677666666555432   234678999999864

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=87.02  E-value=0.73  Score=38.10  Aligned_cols=65  Identities=12%  Similarity=0.018  Sum_probs=44.0

Q ss_pred             CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc--CCCceEEEEecccCC
Q 047623          167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD--GIRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~--~~~~~~vviN~~~~~  231 (340)
                      +.+.|+|+|+..  .......+..+|.++++...+ ..+.......++.+...  ....+.+|.|+.+-.
T Consensus        61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  130 (218)
T 4djt_A           61 IKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK  130 (218)
T ss_dssp             EEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC
T ss_pred             EEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence            678999999843  233345667899999998875 44555665565655543  124677999999854

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=86.85  E-value=0.81  Score=44.74  Aligned_cols=82  Identities=13%  Similarity=0.168  Sum_probs=50.1

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHH
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLD  243 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~  243 (340)
                      .|.+.|+|||+..+  ......+..+|.+++|++...............+...+. .+.+++|+.+.....  .....++
T Consensus        70 ~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~i-piIvViNKiDl~~a~--~~~v~~e  146 (599)
T 3cb4_D           70 TYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDL-EVVPVLNKIDLPAAD--PERVAEE  146 (599)
T ss_dssp             EEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTC-EEEEEEECTTSTTCC--HHHHHHH
T ss_pred             eEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCC-CEEEeeeccCccccc--HHHHHHH
Confidence            37889999999753  334567788999999998754322222333333334455 477999999875311  1112345


Q ss_pred             HHHHhCC
Q 047623          244 IQEMLGL  250 (340)
Q Consensus       244 i~~~~g~  250 (340)
                      +.+.++.
T Consensus       147 i~~~lg~  153 (599)
T 3cb4_D          147 IEDIVGI  153 (599)
T ss_dssp             HHHHTCC
T ss_pred             HHHHhCC
Confidence            5566554

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=86.81  E-value=0.5  Score=38.60  Aligned_cols=24  Identities=33%  Similarity=0.520  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHH
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLA   76 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la   76 (340)
                      .|++. +-.|+||||++..||..+.
T Consensus         2 ~I~i~-G~~GsGKsT~~~~L~~~l~   25 (205)
T 2jaq_A            2 KIAIF-GTVGAGKSTISAEISKKLG   25 (205)
T ss_dssp             EEEEE-CCTTSCHHHHHHHHHHHHC
T ss_pred             EEEEE-CCCccCHHHHHHHHHHhcC
Confidence            45555 6689999999999998764

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=86.79  E-value=0.51  Score=41.59  Aligned_cols=35  Identities=26%  Similarity=0.344  Sum_probs=27.5

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEec
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDA   87 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~   87 (340)
                      .++.+.++ +..|+|||++|..+|..+   |.++..+++
T Consensus        35 ~p~~lLl~-GppGtGKT~la~aiA~~l---~~~~i~v~~   69 (293)
T 3t15_A           35 VPLILGIW-GGKGQGKSFQCELVFRKM---GINPIMMSA   69 (293)
T ss_dssp             CCSEEEEE-ECTTSCHHHHHHHHHHHH---TCCCEEEEH
T ss_pred             CCeEEEEE-CCCCCCHHHHHHHHHHHh---CCCEEEEeH
Confidence            34556666 778999999999999887   778877775

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=86.67  E-value=0.4  Score=40.18  Aligned_cols=26  Identities=27%  Similarity=0.342  Sum_probs=20.1

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHH
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLA   76 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la   76 (340)
                      ++.|.+. +-.|+||||++..||..+.
T Consensus         5 ~~~I~l~-G~~GsGKsT~~~~La~~l~   30 (222)
T 1zak_A            5 PLKVMIS-GAPASGKGTQCELIKTKYQ   30 (222)
T ss_dssp             SCCEEEE-ESTTSSHHHHHHHHHHHHC
T ss_pred             CeEEEEE-CCCCCCHHHHHHHHHHHhC
Confidence            3456666 5678999999999998763

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=86.66  E-value=4.3  Score=31.84  Aligned_cols=61  Identities=16%  Similarity=0.148  Sum_probs=43.1

Q ss_pred             CCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc-----CCCceEEEEecccC
Q 047623          167 PDFILIDCPAGIDAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD-----GIRDIKMVVNRVRT  230 (340)
Q Consensus       167 ~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~-----~~~~~~vviN~~~~  230 (340)
                      +.+.|+|+++...   ...+..+|.++++.+.+ ..++..+...++.+...     ....+.+|.|+.+-
T Consensus        54 ~~l~i~Dt~G~~~---~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl  120 (178)
T 2iwr_A           54 HLVLIREEAGAPD---AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI  120 (178)
T ss_dssp             EEEEEEECSSSCC---HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTC
T ss_pred             EEEEEEECCCCch---hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccc
Confidence            6678999998665   34567799999998874 55677777755555432     12357788999875

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=86.66  E-value=0.44  Score=42.70  Aligned_cols=42  Identities=21%  Similarity=0.128  Sum_probs=30.4

Q ss_pred             CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC-------CCcEEEEecCC
Q 047623           47 GETPRVVVITSGKGGVGKTTTTANVGLSLARL-------GFSVVAIDADV   89 (340)
Q Consensus        47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~-------g~~VlliD~D~   89 (340)
                      ...+..+.++ +..|+|||+++..++..+.+.       +..++.|++-.
T Consensus        42 ~~~~~~lli~-GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~   90 (318)
T 3te6_A           42 SSQNKLFYIT-NADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALE   90 (318)
T ss_dssp             TTCCCEEEEE-CCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTC
T ss_pred             CCCCCeEEEE-CCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccc
Confidence            4555666555 899999999999999999763       23455565544

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=86.66  E-value=1.2  Score=35.91  Aligned_cols=66  Identities=8%  Similarity=-0.069  Sum_probs=45.8

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD---GIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~  231 (340)
                      .+.+.|+|+|+..  .......+..+|.++++.+.+ ..++..+...+..+...   ....+.+|.|+.+-.
T Consensus        66 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~  137 (188)
T 1zd9_A           66 NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP  137 (188)
T ss_dssp             TEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTST
T ss_pred             CEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCc
Confidence            4788999999853  223345567899999998875 45677776665555432   234678999999864

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=86.59  E-value=0.35  Score=40.46  Aligned_cols=32  Identities=19%  Similarity=0.379  Sum_probs=23.1

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      ..|.+. +-.|+||||++..||..+   |..  .+|.|
T Consensus         6 ~~I~l~-G~~GsGKsT~a~~La~~l---~~~--~i~~d   37 (217)
T 3be4_A            6 HNLILI-GAPGSGKGTQCEFIKKEY---GLA--HLSTG   37 (217)
T ss_dssp             CEEEEE-ECTTSSHHHHHHHHHHHH---CCE--EEEHH
T ss_pred             eEEEEE-CCCCCCHHHHHHHHHHHh---Cce--EEehh
Confidence            456666 567999999999999877   443  45554

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=86.59  E-value=0.42  Score=45.44  Aligned_cols=65  Identities=15%  Similarity=0.181  Sum_probs=46.3

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      .+.+.|+|+|+...  ..+...+..+|.++++++.+........+.+..+...+.+. .+++|+.+..
T Consensus        72 ~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~-IvviNK~Dl~  138 (482)
T 1wb1_A           72 NYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPI-IVVITKSDNA  138 (482)
T ss_dssp             TEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCB-CEEEECTTSS
T ss_pred             CEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCE-EEEEECCCcc
Confidence            47899999999532  22344567799999999886543445555566666667766 8999999864

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=86.58  E-value=0.77  Score=45.03  Aligned_cols=66  Identities=20%  Similarity=0.296  Sum_probs=48.0

Q ss_pred             CCCEEEEcCCCCCCHHH--HHHHhcCCeEEEEeCCChhhH-------HHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGIDAGF--ITAITPANEAVLVTTPDITSL-------RDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~~~~--~~~l~~ad~viiv~~~~~~s~-------~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      .+.++|+|||+......  ...+..+|.+|+++..+....       ....+.+..+...+.+.+.+|+|+++..
T Consensus       244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~  318 (611)
T 3izq_1          244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNV  318 (611)
T ss_dssp             SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTT
T ss_pred             CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEeccccc
Confidence            57899999999754322  234567999999999876432       3555666666666777788999999864

>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*

Probab=86.55  E-value=1.1  Score=36.94  Aligned_cols=48  Identities=17%  Similarity=0.087  Sum_probs=32.9

Q ss_pred             CCCCCCCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           41 RKPELAGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        41 ~~~~~~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      +-|.....++++..++ +.-|+||||-....+.....+|++|+++....
T Consensus        11 ~~~~~~~~~g~l~fiy-G~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~   58 (195)
T 1w4r_A           11 LVPRGSKTRGQIQVIL-GPMFSGKSTELMRRVRRFQIAQYKCLVIKYAK   58 (195)
T ss_dssp             --------CCEEEEEE-ECTTSCHHHHHHHHHHHHHHTTCCEEEEEETT
T ss_pred             ccccCCCCceEEEEEE-CCCCCcHHHHHHHHHHHHHHcCCeEEEEcccc
Confidence            3344456677877776 55579999999999988888999999997543

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=86.54  E-value=2.8  Score=34.97  Aligned_cols=66  Identities=15%  Similarity=0.079  Sum_probs=46.6

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCC-ChhhHHHHHHHHHHHHhcCC--CceEEEEecccCC
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTP-DITSLRDADRVTGLLECDGI--RDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~~~--~~~~vviN~~~~~  231 (340)
                      .+.+-|.|+++..  .......+..+|.++++... +..++..+...++.+.....  ..+.+|.|+.+-.
T Consensus        61 ~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~  131 (216)
T 4dkx_A           61 TIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA  131 (216)
T ss_dssp             EEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCG
T ss_pred             EEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchH
Confidence            3677899999854  34455667789988888776 46678888777777764322  3567888998754

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=86.43  E-value=0.7  Score=38.93  Aligned_cols=28  Identities=21%  Similarity=0.324  Sum_probs=22.8

Q ss_pred             CCCCEEEEEEcCCCCCcHHHHHHHHHHHH
Q 047623           47 GETPRVVVITSGKGGVGKTTTTANVGLSL   75 (340)
Q Consensus        47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~l   75 (340)
                      .+..++|.+. +-.|+||+|.|..||..+
T Consensus        26 ~~k~kiI~ll-GpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           26 LAKAKVIFVL-GGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             TTSCEEEEEE-CCTTCCHHHHHHHHHHHH
T ss_pred             ccCCcEEEEE-CCCCCCHHHHHHHHHHHH
Confidence            3566888888 678999999999998765

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=86.34  E-value=0.87  Score=37.85  Aligned_cols=32  Identities=41%  Similarity=0.537  Sum_probs=23.7

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      +.+|+++ +..|+||||++..|+.    .|.  -++|.|
T Consensus         4 ~~~I~i~-G~~GSGKST~~~~L~~----lg~--~~id~D   35 (218)
T 1vht_A            4 RYIVALT-GGIGSGKSTVANAFAD----LGI--NVIDAD   35 (218)
T ss_dssp             CEEEEEE-CCTTSCHHHHHHHHHH----TTC--EEEEHH
T ss_pred             ceEEEEE-CCCCCCHHHHHHHHHH----cCC--EEEEcc
Confidence            3567776 6788999999988875    454  457776

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=86.33  E-value=0.74  Score=36.81  Aligned_cols=66  Identities=9%  Similarity=0.067  Sum_probs=46.1

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCCh-hhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPDI-TSLRDADRVTGLLECD---GIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~  231 (340)
                      .+.+.|+|+|+..  .......+..+|.++++.+.+. .++..+...+..+...   ....+.+|.|+.+-.
T Consensus        64 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~  135 (181)
T 2h17_A           64 NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVK  135 (181)
T ss_dssp             TEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred             CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcc
Confidence            3788999999853  3334456678999999988754 4677776666555432   334678999999864

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=86.22  E-value=0.49  Score=43.85  Aligned_cols=41  Identities=15%  Similarity=0.097  Sum_probs=31.2

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHH------CCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLAR------LGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~------~g~~VlliD~D~~   90 (340)
                      .+.++.|. +..|+||||++.+++.....      .+.+|++||....
T Consensus       177 ~Gei~~I~-G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~  223 (400)
T 3lda_A          177 TGSITELF-GEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT  223 (400)
T ss_dssp             TTSEEEEE-ESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC
T ss_pred             CCcEEEEE-cCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCc
Confidence            34566666 77899999999999876553      3578999998753

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=86.20  E-value=0.58  Score=37.01  Aligned_cols=31  Identities=26%  Similarity=0.263  Sum_probs=22.7

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      .|+++ +-.|+||||++..|+..+   |..  ++|.|
T Consensus         2 ~I~l~-G~~GsGKsT~a~~L~~~l---~~~--~i~~d   32 (168)
T 2pt5_A            2 RIYLI-GFMCSGKSTVGSLLSRSL---NIP--FYDVD   32 (168)
T ss_dssp             EEEEE-SCTTSCHHHHHHHHHHHH---TCC--EEEHH
T ss_pred             eEEEE-CCCCCCHHHHHHHHHHHh---CCC--EEECc
Confidence            45555 678999999999998866   444  45666

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=86.14  E-value=2.1  Score=36.97  Aligned_cols=87  Identities=18%  Similarity=0.183  Sum_probs=53.4

Q ss_pred             CCCEEEEcCCCCCC--H------HHHHHH--hcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccc
Q 047623          166 SPDFILIDCPAGID--A------GFITAI--TPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKG  235 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~------~~~~~l--~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~  235 (340)
                      ++.+.|+|+|+...  .      .....+  ..+|.++++++....  .........+...+...+.+++|+.+-.....
T Consensus        49 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~  126 (271)
T 3k53_A           49 EKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLLKKKG  126 (271)
T ss_dssp             TEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHHHHHT
T ss_pred             CceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcCcccc
Confidence            35689999998432  1      222233  469999999876543  33344444444455356779999998422111


Q ss_pred             cccccHHHHHHHhCCceeEE
Q 047623          236 EDMMSVLDIQEMLGLALLGV  255 (340)
Q Consensus       236 ~~~~~~~~i~~~~g~~v~~~  255 (340)
                       .......+.+.+|.+++.+
T Consensus       127 -~~~~~~~l~~~lg~~~~~~  145 (271)
T 3k53_A          127 -AKIDIKKMRKELGVPVIPT  145 (271)
T ss_dssp             -CCCCHHHHHHHHSSCEEEC
T ss_pred             -cHHHHHHHHHHcCCcEEEE
Confidence             1123678888999887743

>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*

Probab=86.01  E-value=1.1  Score=41.54  Aligned_cols=35  Identities=26%  Similarity=0.304  Sum_probs=30.9

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEE
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAI   85 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vlli   85 (340)
                      ...++|+|+|+   -||||++.-++..|.+.|++|.++
T Consensus        47 ~~~~vI~VTGT---nGKtTT~~~l~~iL~~~G~~~g~~   81 (422)
T 1w78_A           47 PAPFVFTVAGT---NGKGTTCRTLESILMAAGYKVGVY   81 (422)
T ss_dssp             CSSEEEEEECS---SCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             cCCcEEEEeCC---cChHHHHHHHHHHHHHCCCCEEEE
Confidence            45689999975   589999999999999999999876

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=86.01  E-value=0.93  Score=43.94  Aligned_cols=42  Identities=21%  Similarity=0.185  Sum_probs=29.2

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHH---HH-CCCcEEEEecCCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSL---AR-LGFSVVAIDADVG   90 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~l---a~-~g~~VlliD~D~~   90 (340)
                      ...++|+|+ +-||+||||+|..++...   .. ....|..++++..
T Consensus       145 ~~~~~v~I~-G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~  190 (591)
T 1z6t_A          145 GEPGWVTIH-GMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ  190 (591)
T ss_dssp             TSCEEEEEE-CCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred             CCCceEEEE-cCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence            345677776 789999999999988643   22 2235777777643

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=86.00  E-value=0.41  Score=39.10  Aligned_cols=33  Identities=18%  Similarity=0.181  Sum_probs=25.9

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      |.|+ +..|+|||++|..||..    |.++++++....
T Consensus         2 ilV~-Gg~~SGKS~~A~~la~~----~~~~~yiaT~~~   34 (180)
T 1c9k_A            2 ILVT-GGARSGKSRHAEALIGD----APQVLYIATSQI   34 (180)
T ss_dssp             EEEE-ECTTSSHHHHHHHHHCS----CSSEEEEECCCC
T ss_pred             EEEE-CCCCCcHHHHHHHHHhc----CCCeEEEecCCC
Confidence            4556 56789999999998854    778999988653

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=85.82  E-value=0.4  Score=40.33  Aligned_cols=33  Identities=21%  Similarity=0.309  Sum_probs=23.1

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      ++.|++. +-.|+||||++..||..+   |.  ..+|.|
T Consensus         7 ~~~I~l~-G~~GsGKsT~a~~La~~l---~~--~~i~~d   39 (227)
T 1zd8_A            7 LLRAVIM-GAPGSGKGTVSSRITTHF---EL--KHLSSG   39 (227)
T ss_dssp             CCEEEEE-ECTTSSHHHHHHHHHHHS---SS--EEEEHH
T ss_pred             CcEEEEE-CCCCCCHHHHHHHHHHHc---CC--eEEech
Confidence            3566666 668899999999988754   43  345554

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=85.65  E-value=0.68  Score=43.42  Aligned_cols=38  Identities=24%  Similarity=0.333  Sum_probs=30.8

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHC--CCcEEEEecC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARL--GFSVVAIDAD   88 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~--g~~VlliD~D   88 (340)
                      ...+.++ +..|+||||++..+|..+...  +.+++.+++.
T Consensus       130 ~~~lll~-Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~  169 (440)
T 2z4s_A          130 YNPLFIY-GGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE  169 (440)
T ss_dssp             SCCEEEE-CSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred             CCeEEEE-CCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence            4455565 778999999999999998765  8889888765

>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*

Probab=85.59  E-value=1.8  Score=40.39  Aligned_cols=36  Identities=22%  Similarity=0.320  Sum_probs=31.9

Q ss_pred             CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEE
Q 047623           47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAI   85 (340)
Q Consensus        47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vlli   85 (340)
                      ....++|.|+|+   .||||++.-|+..|.+.|++|.++
T Consensus        49 ~~~~~vI~VtGT---NGKgSt~~~l~~iL~~~G~~vg~~   84 (437)
T 3nrs_A           49 KPAPKIFTVAGT---NGKGTTCCTLEAILLAAGLRVGVY   84 (437)
T ss_dssp             CSSSEEEEEECS---SSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             cccCCEEEEECC---cChHHHHHHHHHHHHHCCCcEEEE
Confidence            456789999975   689999999999999999999886

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=85.48  E-value=0.57  Score=37.99  Aligned_cols=23  Identities=39%  Similarity=0.663  Sum_probs=18.1

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHH
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGL   73 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~   73 (340)
                      +.++++. +..|+||||++..|+.
T Consensus         2 g~ii~l~-G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            2 KKLYIIT-GPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEEEE-CSTTSSHHHHHHHHHH
T ss_pred             CeEEEEE-CCCCCcHHHHHHHHhc
Confidence            3556665 7789999999999975

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=85.47  E-value=0.63  Score=38.13  Aligned_cols=26  Identities=27%  Similarity=0.379  Sum_probs=20.5

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHH
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSL   75 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~l   75 (340)
                      .+.+|+++ +..|+||||++..|+..+
T Consensus         5 ~g~~i~l~-G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            5 KGLLIVLS-GPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCCEEEEE-CSTTSCHHHHHHHHHHCT
T ss_pred             CCCEEEEE-CCCCCCHHHHHHHHHHhh
Confidence            45677777 667899999998887765

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=85.46  E-value=0.8  Score=43.97  Aligned_cols=41  Identities=15%  Similarity=0.120  Sum_probs=33.5

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      ..+.++++. +..|+||||++..++..++..|.+++.+....
T Consensus       279 ~~G~i~~i~-G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee  319 (525)
T 1tf7_A          279 FKDSIILAT-GATGTGKTLLVSRFVENACANKERAILFAYEE  319 (525)
T ss_dssp             ESSCEEEEE-ECTTSSHHHHHHHHHHHHHTTTCCEEEEESSS
T ss_pred             CCCcEEEEE-eCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence            445677777 67889999999999999888888898887754

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=85.38  E-value=7.4  Score=36.28  Aligned_cols=36  Identities=19%  Similarity=0.242  Sum_probs=25.8

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      .+-|.++ +..|+|||++|..+|..+  .+..+..+++.
T Consensus       167 ~~~vLL~-GppGtGKT~lA~aia~~~--~~~~~~~v~~~  202 (444)
T 2zan_A          167 WRGILLF-GPPGTGKSYLAKAVATEA--NNSTFFSISSS  202 (444)
T ss_dssp             CSEEEEE-CSTTSSHHHHHHHHHHHC--CSSEEEEECCC
T ss_pred             CceEEEE-CCCCCCHHHHHHHHHHHc--CCCCEEEEeHH
Confidence            3566666 778999999999998875  25566555543

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=85.25  E-value=0.55  Score=40.45  Aligned_cols=38  Identities=18%  Similarity=0.271  Sum_probs=30.3

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      -+.++ +..|+|||++|..++..+.+.+.++..+++...
T Consensus        31 ~vll~-G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~   68 (265)
T 2bjv_A           31 PVLII-GERGTGKELIASRLHYLSSRWQGPFISLNCAAL   68 (265)
T ss_dssp             CEEEE-CCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGS
T ss_pred             CEEEE-CCCCCcHHHHHHHHHHhcCccCCCeEEEecCCC
Confidence            34455 788999999999999887777778888887643

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=85.07  E-value=0.57  Score=45.35  Aligned_cols=41  Identities=29%  Similarity=0.451  Sum_probs=31.6

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEecCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARL-GFSVVAIDADV   89 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~-g~~VlliD~D~   89 (340)
                      ..+.+|.++ +..|+||||++..||..+... |.++.++|.|.
T Consensus       367 ~~G~iI~Li-G~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~  408 (552)
T 3cr8_A          367 RQGFTVFFT-GLSGAGKSTLARALAARLMEMGGRCVTLLDGDI  408 (552)
T ss_dssp             GSCEEEEEE-ESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHH
T ss_pred             ccceEEEEE-CCCCChHHHHHHHHHHhhcccCCceEEEECCcH
Confidence            345677777 567899999999999999865 45677777763

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=85.01  E-value=0.78  Score=42.03  Aligned_cols=34  Identities=21%  Similarity=0.178  Sum_probs=27.9

Q ss_pred             cCCCCCcHHHHHHHHHHHHHHC------CCcEEEEecCCC
Q 047623           57 SGKGGVGKTTTTANVGLSLARL------GFSVVAIDADVG   90 (340)
Q Consensus        57 s~kGGvGKTt~a~~LA~~la~~------g~~VlliD~D~~   90 (340)
                      .+.+|+|||+++..++..+...      +..++.+++...
T Consensus        58 ~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (412)
T 1w5s_A           58 IGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNA   97 (412)
T ss_dssp             TTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGC
T ss_pred             cCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCC
Confidence            5889999999999999988763      677888887543

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=85.00  E-value=1.7  Score=35.06  Aligned_cols=67  Identities=10%  Similarity=0.050  Sum_probs=45.7

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc----------CCCceEEEEecccCCc
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD----------GIRDIKMVVNRVRTDM  232 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~----------~~~~~~vviN~~~~~~  232 (340)
                      .+.+.|+|+|+..  .......+..+|.++++.+.+ ..++..+...+..+...          ....+.+|.|+.+-..
T Consensus        62 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~  141 (199)
T 4bas_A           62 RVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAG  141 (199)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTT
T ss_pred             CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCC
Confidence            4788999999854  223344567899999999876 44577776665555432          1345779999998643

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=84.89  E-value=1  Score=44.51  Aligned_cols=35  Identities=31%  Similarity=0.482  Sum_probs=29.9

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEec
Q 047623           53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDA   87 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~   87 (340)
                      +++.-+-.|+|||++.+++...+.+.|.+||+.-.
T Consensus       207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~  241 (646)
T 4b3f_X          207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP  241 (646)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC
Confidence            55666779999999999999999999999998643

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=84.87  E-value=0.9  Score=38.75  Aligned_cols=26  Identities=27%  Similarity=0.290  Sum_probs=20.1

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHH
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSL   75 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~l   75 (340)
                      .+.+|.++ +-.|+||||+|..|+..+
T Consensus        28 ~~~~I~l~-G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           28 PDGRYIFL-GAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             CCEEEEEE-CCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEE-CCCCCCHHHHHHHHHHHh
Confidence            34566665 778899999999998765

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=84.77  E-value=3.3  Score=35.81  Aligned_cols=38  Identities=29%  Similarity=0.350  Sum_probs=31.9

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      -.+|++.|+|+.||.|+     .+|..|+++|.+|.++|-+..
T Consensus        13 l~gk~~lVTGas~gIG~-----a~a~~la~~G~~V~~~~r~~~   50 (280)
T 3pgx_A           13 LQGRVAFITGAARGQGR-----SHAVRLAAEGADIIACDICAP   50 (280)
T ss_dssp             TTTCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEECCSC
T ss_pred             cCCCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEecccc
Confidence            34589999999999887     478889999999999987643

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=84.74  E-value=1.6  Score=37.83  Aligned_cols=40  Identities=23%  Similarity=0.423  Sum_probs=29.5

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEecC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARL-GFSVVAIDAD   88 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~-g~~VlliD~D   88 (340)
                      +.+.+++++ +..|+||||+...|+..+... .-++.+.+-+
T Consensus        23 ~~g~~v~i~-Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~   63 (261)
T 2eyu_A           23 RKMGLILVT-GPTGSGKSTTIASMIDYINQTKSYHIITIEDP   63 (261)
T ss_dssp             CSSEEEEEE-CSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred             CCCCEEEEE-CCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc
Confidence            455788888 566899999999999888753 4467665543

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=84.55  E-value=1.1  Score=42.44  Aligned_cols=37  Identities=16%  Similarity=0.253  Sum_probs=29.2

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      .+.++-+-.|+||||++..||..+...+.++..++.|
T Consensus        40 ~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d   76 (469)
T 1bif_A           40 TLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVG   76 (469)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecc
Confidence            3344447789999999999999998878788777654

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=84.42  E-value=0.62  Score=39.16  Aligned_cols=35  Identities=17%  Similarity=0.212  Sum_probs=28.4

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      ||++.|+|+.||.|+.     +|..|+++|.+|.++|-+.
T Consensus         1 Mk~vlVTGas~gIG~~-----~a~~l~~~G~~V~~~~r~~   35 (230)
T 3guy_A            1 MSLIVITGASSGLGAE-----LAKLYDAEGKATYLTGRSE   35 (230)
T ss_dssp             --CEEEESTTSHHHHH-----HHHHHHHTTCCEEEEESCH
T ss_pred             CCEEEEecCCchHHHH-----HHHHHHHCCCEEEEEeCCH
Confidence            4789999999998874     7778889999999998764

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=84.38  E-value=0.69  Score=40.62  Aligned_cols=33  Identities=21%  Similarity=0.275  Sum_probs=22.9

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      ++|.+. +-.|+||||+|..|+..+  .  ....+|.|
T Consensus         3 ~~I~l~-G~~GsGKST~a~~L~~~~--~--~~~~i~~D   35 (301)
T 1ltq_A            3 KIILTI-GCPGSGKSTWAREFIAKN--P--GFYNINRD   35 (301)
T ss_dssp             EEEEEE-CCTTSSHHHHHHHHHHHS--T--TEEEECHH
T ss_pred             eEEEEE-CCCCCCHHHHHHHHHHhC--C--CcEEeccc
Confidence            455554 778999999999888732  2  34566665

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=84.31  E-value=0.75  Score=39.85  Aligned_cols=40  Identities=33%  Similarity=0.466  Sum_probs=33.2

Q ss_pred             CCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           46 AGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      .....|++.|+|+.||.|+     .+|..|+++|.+|.++|.+..
T Consensus        10 ~~~~~k~vlVTGas~GIG~-----aia~~l~~~G~~V~~~~r~~~   49 (269)
T 3vtz_A           10 EEFTDKVAIVTGGSSGIGL-----AVVDALVRYGAKVVSVSLDEK   49 (269)
T ss_dssp             CTTTTCEEEESSTTSHHHH-----HHHHHHHHTTCEEEEEESCC-
T ss_pred             cCCCCCEEEEeCCCCHHHH-----HHHHHHHHCCCEEEEEeCCch
Confidence            3456789999999999997     478889999999999987764

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=84.04  E-value=0.92  Score=38.89  Aligned_cols=37  Identities=32%  Similarity=0.627  Sum_probs=32.9

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      .+|++.|+|+.+|.|+.     +|..|++.|.+|.+.|.|..
T Consensus        10 ~GK~alVTGas~GIG~a-----ia~~la~~Ga~Vv~~~~~~~   46 (242)
T 4b79_A           10 AGQQVLVTGGSSGIGAA-----IAMQFAELGAEVVALGLDAD   46 (242)
T ss_dssp             TTCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESSTT
T ss_pred             CCCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEeCCHH
Confidence            47999999999999985     78899999999999998754

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=84.02  E-value=1  Score=40.91  Aligned_cols=94  Identities=16%  Similarity=0.147  Sum_probs=50.5

Q ss_pred             CCCEEEEcCCCCCC---------------HHHHHHHhcCCeEEEEeCCChh--hHHHHHHHHHHHHhcCCCceEEEEecc
Q 047623          166 SPDFILIDCPAGID---------------AGFITAITPANEAVLVTTPDIT--SLRDADRVTGLLECDGIRDIKMVVNRV  228 (340)
Q Consensus       166 ~~D~VIiD~~~~~~---------------~~~~~~l~~ad~viiv~~~~~~--s~~~~~~~~~~l~~~~~~~~~vviN~~  228 (340)
                      ..++.|+|+|+...               ......+..+|.+++++.+...  .......+++.+...+ ..+.+|+|++
T Consensus       135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~-~~~i~V~nK~  213 (360)
T 3t34_A          135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSG-DRTFGVLTKI  213 (360)
T ss_dssp             SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTC-TTEEEEEECG
T ss_pred             CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccC-CCEEEEEeCC
Confidence            46899999998432               2334566789988887765321  2233344444444333 3577899999


Q ss_pred             cCCcccccccccHHHHHHHhCCceeEEecCCh
Q 047623          229 RTDMIKGEDMMSVLDIQEMLGLALLGVIPEDS  260 (340)
Q Consensus       229 ~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~  260 (340)
                      +.-..........+.....++.++..+...+.
T Consensus       214 Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~  245 (360)
T 3t34_A          214 DLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQ  245 (360)
T ss_dssp             GGCCTTCCSHHHHTTSSSCCSSCCEEECCCCH
T ss_pred             ccCCCcccHHHHHcCccccccCCeEEEEECCh
Confidence            85432111110011111224556666666553

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=84.01  E-value=0.56  Score=38.73  Aligned_cols=25  Identities=32%  Similarity=0.371  Sum_probs=19.6

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHH
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSL   75 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~l   75 (340)
                      +++|.+. +-.|+||||++..|+..+
T Consensus        12 ~~~i~l~-G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A           12 IPPLVVC-GPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CCCEEEE-CCTTSCHHHHHHHHHHHC
T ss_pred             CCEEEEE-CCCCCCHHHHHHHHHHhC
Confidence            3566666 667899999999998865

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=83.91  E-value=1.7  Score=37.01  Aligned_cols=37  Identities=22%  Similarity=0.334  Sum_probs=27.1

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      ..+-+.++ +..|+|||++|..+|..+   +.++..+++..
T Consensus        38 ~~~~vll~-G~~GtGKT~la~~la~~~---~~~~~~~~~~~   74 (262)
T 2qz4_A           38 VPKGALLL-GPPGCGKTLLAKAVATEA---QVPFLAMAGAE   74 (262)
T ss_dssp             CCCEEEEE-SCTTSSHHHHHHHHHHHH---TCCEEEEETTT
T ss_pred             CCceEEEE-CCCCCCHHHHHHHHHHHh---CCCEEEechHH
Confidence            34456666 677999999999998865   56777777653

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=83.79  E-value=2.6  Score=34.02  Aligned_cols=65  Identities=11%  Similarity=0.101  Sum_probs=43.9

Q ss_pred             CCCEEEEcCCCCCC--HHH---HHHHhcCCeEEEEeCCChh---hHHHHHHHHHHHHh-cCCCceEEEEecccC
Q 047623          166 SPDFILIDCPAGID--AGF---ITAITPANEAVLVTTPDIT---SLRDADRVTGLLEC-DGIRDIKMVVNRVRT  230 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~---~~~l~~ad~viiv~~~~~~---s~~~~~~~~~~l~~-~~~~~~~vviN~~~~  230 (340)
                      .+.+.|+|+++...  ...   ...+..+|.++++.+....   ++..+...++.+.. .....+.+|.|+.+-
T Consensus        68 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl  141 (196)
T 3llu_A           68 FVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDG  141 (196)
T ss_dssp             SCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGG
T ss_pred             eeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEecccc
Confidence            48899999999543  233   5677889999999988764   44444444444422 223467788999984

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=83.75  E-value=0.88  Score=39.35  Aligned_cols=37  Identities=22%  Similarity=0.466  Sum_probs=30.9

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      -++|++.|+|+.||.|+     .+|..|+++|.+|.++|-+.
T Consensus        14 ~~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~   50 (266)
T 3p19_A           14 SMKKLVVITGASSGIGE-----AIARRFSEEGHPLLLLARRV   50 (266)
T ss_dssp             -CCCEEEEESTTSHHHH-----HHHHHHHHTTCCEEEEESCH
T ss_pred             CCCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEECCH
Confidence            34689999999999998     47888999999999998653

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=83.75  E-value=0.83  Score=38.66  Aligned_cols=35  Identities=17%  Similarity=0.376  Sum_probs=30.1

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      +|++.|+|+.||.|+     .+|..|+++|.+|.++|-+.
T Consensus         3 ~k~vlVTGas~GIG~-----a~a~~l~~~G~~V~~~~r~~   37 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGR-----ALTIGLVERGHQVSMMGRRY   37 (235)
T ss_dssp             CCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEECCH
Confidence            478999999999998     47888899999999998764

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=83.68  E-value=0.96  Score=37.60  Aligned_cols=27  Identities=26%  Similarity=0.316  Sum_probs=21.2

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHH
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSL   75 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~l   75 (340)
                      .++++|+|+ +|.|+||+|+|--+...+
T Consensus         9 ~~~~II~it-Gk~~SGKd~va~~l~~~~   35 (202)
T 3ch4_B            9 APRLVLLFS-GKRKSGKDFVTEALQSRL   35 (202)
T ss_dssp             CCSEEEEEE-ECTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEE-CCCCCChHHHHHHHHHHc
Confidence            456788887 889999999997776544

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=83.68  E-value=3.9  Score=37.78  Aligned_cols=142  Identities=13%  Similarity=0.162  Sum_probs=72.4

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWS  129 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  129 (340)
                      ++-|.++ +-.|+|||++|..+|..+   |.+.+.+++..   -.+.+.|...   ..+-+++.........+..   ++
T Consensus       182 prGvLL~-GPPGTGKTllAkAiA~e~---~~~f~~v~~s~---l~sk~vGese---~~vr~lF~~Ar~~aP~IIF---iD  248 (405)
T 4b4t_J          182 PKGVILY-GPPGTGKTLLARAVAHHT---DCKFIRVSGAE---LVQKYIGEGS---RMVRELFVMAREHAPSIIF---MD  248 (405)
T ss_dssp             CCCEEEE-SCSSSSHHHHHHHHHHHH---TCEEEEEEGGG---GSCSSTTHHH---HHHHHHHHHHHHTCSEEEE---EE
T ss_pred             CCceEEe-CCCCCCHHHHHHHHHHhh---CCCceEEEhHH---hhccccchHH---HHHHHHHHHHHHhCCceEe---ee
Confidence            3456666 778999999998887753   56776666542   1223333211   2222333211111111111   13


Q ss_pred             ceeEeecCCCCCCCCCCcchhh----HHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHh--cCCeEEEEeCCChhhH
Q 047623          130 NFELLCISKPRSKLPLGFGGKA----LTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAIT--PANEAVLVTTPDITSL  203 (340)
Q Consensus       130 ~l~~l~~~~~~~~~~~~~~~~~----~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~--~ad~viiv~~~~~~s~  203 (340)
                      .+|-+.........   .....    +..++..+.. ....-+++||=+.+..+....+.+.  .-|..|-+-.|+....
T Consensus       249 EiDai~~~R~~~~~---~~~~~~~~~l~~lL~~lDg-~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R  324 (405)
T 4b4t_J          249 EIDSIGSTRVEGSG---GGDSEVQRTMLELLNQLDG-FETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAAR  324 (405)
T ss_dssp             SSSCCTTSCSCSSS---GGGGHHHHHHHHHHHHHHT-TTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHH
T ss_pred             cchhhccCCCCCCC---CCcHHHHHHHHHHHHhhhc-cCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHH
Confidence            34433222211111   11112    2334444432 2344567788777776666666675  6888888888887776


Q ss_pred             HHHHH
Q 047623          204 RDADR  208 (340)
Q Consensus       204 ~~~~~  208 (340)
                      ....+
T Consensus       325 ~~Il~  329 (405)
T 4b4t_J          325 AEILR  329 (405)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65443

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=83.65  E-value=1.7  Score=35.81  Aligned_cols=65  Identities=12%  Similarity=0.062  Sum_probs=40.9

Q ss_pred             CCCEEEEcCCCCCC------------HHHHHHHhc---CCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccC
Q 047623          166 SPDFILIDCPAGID------------AGFITAITP---ANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRT  230 (340)
Q Consensus       166 ~~D~VIiD~~~~~~------------~~~~~~l~~---ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~  230 (340)
                      .+.+.|+|+|+...            ......+..   +|.++++++....--.....+++.+...+. .+.+|+|+.+.
T Consensus        78 ~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~-p~i~v~nK~Dl  156 (223)
T 4dhe_A           78 EPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGK-PIHSLLTKCDK  156 (223)
T ss_dssp             SCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCC-CEEEEEECGGG
T ss_pred             CCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCC-CEEEEEecccc
Confidence            47899999998422            122233433   677888888764322334455666665443 57799999986


Q ss_pred             C
Q 047623          231 D  231 (340)
Q Consensus       231 ~  231 (340)
                      .
T Consensus       157 ~  157 (223)
T 4dhe_A          157 L  157 (223)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=83.50  E-value=5.1  Score=35.49  Aligned_cols=34  Identities=15%  Similarity=0.277  Sum_probs=25.3

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEec
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDA   87 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~   87 (340)
                      .+-+.++ +..|+|||++|..+|..+   +.++..+++
T Consensus        51 ~~~vLl~-GppGtGKT~la~aia~~~---~~~~~~v~~   84 (322)
T 3eie_A           51 TSGILLY-GPPGTGKSYLAKAVATEA---NSTFFSVSS   84 (322)
T ss_dssp             CCEEEEE-CSSSSCHHHHHHHHHHHH---TCEEEEEEH
T ss_pred             CCeEEEE-CCCCCcHHHHHHHHHHHH---CCCEEEEch
Confidence            4556666 678999999999888764   567776665

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=83.48  E-value=0.92  Score=38.36  Aligned_cols=36  Identities=22%  Similarity=0.481  Sum_probs=30.6

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      +|++.|+|+.||.|+.     +|..|+++|.+|.+++-+..
T Consensus         2 ~k~vlVTGas~giG~~-----~a~~l~~~G~~V~~~~r~~~   37 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRA-----IAEALVARGYRVAIASRNPE   37 (239)
T ss_dssp             CCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESSCH
T ss_pred             CCEEEEeCCCcHHHHH-----HHHHHHHCCCEEEEEeCCHH
Confidence            5789999999999984     77888899999999987754

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=83.42  E-value=2.6  Score=37.40  Aligned_cols=35  Identities=14%  Similarity=0.157  Sum_probs=26.3

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      +++.|+ +..|+|||+++..++..+.   .+++.+++..
T Consensus        31 ~~v~i~-G~~G~GKT~L~~~~~~~~~---~~~~~~~~~~   65 (357)
T 2fna_A           31 PITLVL-GLRRTGKSSIIKIGINELN---LPYIYLDLRK   65 (357)
T ss_dssp             SEEEEE-ESTTSSHHHHHHHHHHHHT---CCEEEEEGGG
T ss_pred             CcEEEE-CCCCCCHHHHHHHHHHhcC---CCEEEEEchh
Confidence            355555 7789999999999887653   4578888764

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=83.40  E-value=0.93  Score=38.61  Aligned_cols=36  Identities=25%  Similarity=0.398  Sum_probs=30.3

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      ||++.|+|+.||.|+.     +|..|+++|.+|.+++-+..
T Consensus         1 mk~vlVTGas~gIG~~-----~a~~l~~~G~~V~~~~r~~~   36 (257)
T 1fjh_A            1 MSIIVISGCATGIGAA-----TRKVLEAAGHQIVGIDIRDA   36 (257)
T ss_dssp             CCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESSSS
T ss_pred             CCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEeCCch
Confidence            4689999999999885     77788889999999987754

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=83.37  E-value=1.4  Score=38.51  Aligned_cols=36  Identities=19%  Similarity=0.313  Sum_probs=27.9

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      +.+.++ +..|+|||++|..+|..+   +.++..+++...
T Consensus        51 ~~vll~-G~~GtGKT~la~~la~~l---~~~~~~i~~~~~   86 (310)
T 1ofh_A           51 KNILMI-GPTGVGKTEIARRLAKLA---NAPFIKVEATKF   86 (310)
T ss_dssp             CCEEEE-CCTTSSHHHHHHHHHHHH---TCCEEEEEGGGG
T ss_pred             ceEEEE-CCCCCCHHHHHHHHHHHh---CCCEEEEcchhc
Confidence            445555 778999999999999877   667888887643

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=83.34  E-value=0.97  Score=38.45  Aligned_cols=25  Identities=28%  Similarity=0.340  Sum_probs=20.7

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHH
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSL   75 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~l   75 (340)
                      +.+|++. +..|+||||++..||..+
T Consensus        27 ~~~i~l~-G~~GsGKSTl~k~La~~l   51 (246)
T 2bbw_A           27 LLRAVIL-GPPGSGKGTVCQRIAQNF   51 (246)
T ss_dssp             CCEEEEE-CCTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEE-CCCCCCHHHHHHHHHHHh
Confidence            4577777 778899999999998776

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=83.31  E-value=0.82  Score=39.24  Aligned_cols=27  Identities=30%  Similarity=0.444  Sum_probs=21.0

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHH
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSL   75 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~l   75 (340)
                      ..+.+|++. +..|+||||++..||..|
T Consensus        25 ~~g~~I~I~-G~~GsGKSTl~k~La~~L   51 (252)
T 4e22_A           25 AIAPVITVD-GPSGAGKGTLCKALAESL   51 (252)
T ss_dssp             TTSCEEEEE-CCTTSSHHHHHHHHHHHT
T ss_pred             CCCcEEEEE-CCCCCCHHHHHHHHHHhc
Confidence            345688888 567899999998888654

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=83.26  E-value=3.2  Score=32.49  Aligned_cols=65  Identities=8%  Similarity=-0.039  Sum_probs=42.3

Q ss_pred             CCEEEEcCCCCCCH--HHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc------CCCceEEEEecccCC
Q 047623          167 PDFILIDCPAGIDA--GFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD------GIRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~~~--~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~------~~~~~~vviN~~~~~  231 (340)
                      +.+.|+|+|+....  .....+..+|.++++...+ ..+...+...++.+...      ....+.+|.|+.+..
T Consensus        56 ~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~  129 (177)
T 1wms_A           56 VTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS  129 (177)
T ss_dssp             EEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred             EEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence            67899999985432  2233456799988887764 44555555555555431      223678999999864

>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2

Probab=83.17  E-value=1.8  Score=40.59  Aligned_cols=49  Identities=20%  Similarity=0.203  Sum_probs=37.4

Q ss_pred             hhHHHHHhhCCCCCCCCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEE
Q 047623           31 SSIQSVLQWNRKPELAGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAI   85 (340)
Q Consensus        31 ~~~~~~l~~~~~~~~~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vlli   85 (340)
                      ..+++.++.--.+.   +..++|.|+|+   -||||++.-|+..|.+.|++|.++
T Consensus        36 ~~~~~~l~~lg~p~---~~~~vI~VTGT---nGKtTT~~~l~~iL~~~G~~vg~~   84 (442)
T 1o5z_A           36 ERISMLLSKLGNPH---LEYKTIHIGGT---NGKGSVANMVSNILVSQGYRVGSY   84 (442)
T ss_dssp             HHHHHHHHHTTCGG---GSSEEEEEECS---SSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred             HHHHHHHHHcCCch---hcCCEEEEECC---cCHHHHHHHHHHHHHHCCCCEEEE
Confidence            44555555543332   34589999975   689999999999999999999986

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=83.12  E-value=1.6  Score=39.93  Aligned_cols=39  Identities=23%  Similarity=0.439  Sum_probs=30.2

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEec
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARL-GFSVVAIDA   87 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~-g~~VlliD~   87 (340)
                      +.+.+++|+ +..|+||||+...|+..+... ..++..++-
T Consensus       134 ~~g~~i~iv-G~~GsGKTTll~~l~~~~~~~~~g~I~~~e~  173 (372)
T 2ewv_A          134 RKMGLILVT-GPTGSGKSTTIASMIDYINQTKSYHIITIED  173 (372)
T ss_dssp             SSSEEEEEE-CSSSSSHHHHHHHHHHHHHHHSCCEEEEEES
T ss_pred             cCCCEEEEE-CCCCCCHHHHHHHHHhhcCcCCCcEEEEecc
Confidence            456778888 566899999999999988864 457777763

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=83.11  E-value=1.2  Score=43.18  Aligned_cols=63  Identities=16%  Similarity=0.171  Sum_probs=43.1

Q ss_pred             CEEEEcCCCCCC-------------HHHHHHHhcCCeEEEEeCCChh-hHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          168 DFILIDCPAGID-------------AGFITAITPANEAVLVTTPDIT-SLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       168 D~VIiD~~~~~~-------------~~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      .++|||||+...             ......+..+|.+++++++... .......+++.+...+ ..+.+|+|+++.-
T Consensus       155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~-~pvilVlNK~Dl~  231 (550)
T 2qpt_A          155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHE-DKIRVVLNKADMV  231 (550)
T ss_dssp             HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCG-GGEEEEEECGGGS
T ss_pred             CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcC-CCEEEEEECCCcc
Confidence            569999998543             2234456789999999988653 3344455666665433 3588999999864

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=83.06  E-value=3.5  Score=37.25  Aligned_cols=35  Identities=14%  Similarity=0.274  Sum_probs=26.0

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      .+-|.++ +..|+|||++|..+|..+   +.++..+++.
T Consensus        84 ~~~iLL~-GppGtGKT~la~ala~~~---~~~~~~v~~~  118 (355)
T 2qp9_X           84 TSGILLY-GPPGTGKSYLAKAVATEA---NSTFFSVSSS  118 (355)
T ss_dssp             CCCEEEE-CSTTSCHHHHHHHHHHHH---TCEEEEEEHH
T ss_pred             CceEEEE-CCCCCcHHHHHHHHHHHh---CCCEEEeeHH
Confidence            3446666 778999999999998876   5677666553

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=83.04  E-value=0.79  Score=39.44  Aligned_cols=36  Identities=25%  Similarity=0.434  Sum_probs=31.8

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      .+|++.|+|+.+|.|+.     +|..|++.|.+|.+.|-+.
T Consensus         8 ~GKvalVTGas~GIG~a-----iA~~la~~Ga~Vvi~~r~~   43 (247)
T 4hp8_A            8 EGRKALVTGANTGLGQA-----IAVGLAAAGAEVVCAARRA   43 (247)
T ss_dssp             TTCEEEETTTTSHHHHH-----HHHHHHHTTCEEEEEESSC
T ss_pred             CCCEEEEeCcCCHHHHH-----HHHHHHHcCCEEEEEeCCc
Confidence            46899999999999985     7889999999999998764

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=82.97  E-value=1.1  Score=36.49  Aligned_cols=66  Identities=11%  Similarity=0.012  Sum_probs=43.4

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc------CCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD------GIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~------~~~~~~vviN~~~~~  231 (340)
                      .+.+.|+|+|+..  .......+..+|.++++.+.+ ..+...+...++.+...      ....+.+|+|+.+-.
T Consensus        56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  130 (207)
T 1vg8_A           56 LVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE  130 (207)
T ss_dssp             EEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred             EEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence            3678999999843  222334567799999998774 45566665555555432      123578999999864

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=82.88  E-value=1.1  Score=36.66  Aligned_cols=25  Identities=24%  Similarity=0.417  Sum_probs=20.2

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHH
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSL   75 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~l   75 (340)
                      +.+|+++ +..|+||||++..|+..+
T Consensus         7 g~ii~l~-Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            7 ANLFIIS-APSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             CCEEEEE-CCTTSCHHHHHHHHHHHS
T ss_pred             CcEEEEE-CcCCCCHHHHHHHHHhhC
Confidence            4678877 667899999999988764

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=82.74  E-value=0.84  Score=37.89  Aligned_cols=30  Identities=20%  Similarity=0.293  Sum_probs=21.7

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      |++. +..|+||||++..||..+   |..+  +|.|
T Consensus         3 I~l~-G~~GsGKsT~a~~L~~~~---g~~~--i~~d   32 (214)
T 1e4v_A            3 IILL-GAPVAGKGTQAQFIMEKY---GIPQ--ISTG   32 (214)
T ss_dssp             EEEE-ESTTSSHHHHHHHHHHHH---CCCE--EEHH
T ss_pred             EEEE-CCCCCCHHHHHHHHHHHh---CCeE--EeHH
Confidence            4555 667999999999999876   5544  5553

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=82.69  E-value=6  Score=34.26  Aligned_cols=88  Identities=17%  Similarity=0.136  Sum_probs=54.2

Q ss_pred             CCEEEEcCCCCCC--------HHHHHHHh--cCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCccccc
Q 047623          167 PDFILIDCPAGID--------AGFITAIT--PANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGE  236 (340)
Q Consensus       167 ~D~VIiD~~~~~~--------~~~~~~l~--~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~  236 (340)
                      +++.|+|+|+...        ......+.  .+|.++++++...  ......+...+.+.+. .+.+++|+.+...... 
T Consensus        49 ~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~--~e~~~~~~~~l~~~~~-p~ilv~NK~Dl~~~~~-  124 (272)
T 3b1v_A           49 KDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATN--LERNLYLTTQLIETGI-PVTIALNMIDVLDGQG-  124 (272)
T ss_dssp             TTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGG--HHHHHHHHHHHHHTCS-CEEEEEECHHHHHHTT-
T ss_pred             CeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCc--hHhHHHHHHHHHhcCC-CEEEEEEChhhCCcCC-
Confidence            6789999998542        22333443  5999999987643  3444445455554443 4678999987532111 


Q ss_pred             ccccHHHHHHHhCCceeEEecC
Q 047623          237 DMMSVLDIQEMLGLALLGVIPE  258 (340)
Q Consensus       237 ~~~~~~~i~~~~g~~v~~~Ip~  258 (340)
                      .......+.+.+|.+++.+--.
T Consensus       125 ~~~~~~~l~~~lg~~vi~~SA~  146 (272)
T 3b1v_A          125 KKINVDKLSYHLGVPVVATSAL  146 (272)
T ss_dssp             CCCCHHHHHHHHTSCEEECBTT
T ss_pred             cHHHHHHHHHHcCCCEEEEEcc
Confidence            1134677888889887755443

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=82.63  E-value=1  Score=37.24  Aligned_cols=27  Identities=33%  Similarity=0.416  Sum_probs=20.4

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHH
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSL   75 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~l   75 (340)
                      +.+++|+++ +-.|+||||++..|+..+
T Consensus         6 ~~g~~i~l~-GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            6 ERGLLIVLS-GPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CCCCEEEEE-CCTTSCHHHHHHHHHHST
T ss_pred             CCCcEEEEE-CcCCCCHHHHHHHHHhhC
Confidence            345677766 777899999998887654

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=82.41  E-value=2.2  Score=36.68  Aligned_cols=88  Identities=13%  Similarity=0.083  Sum_probs=54.6

Q ss_pred             CCCEEEEcCCCCCC--H------HHHHHH--hcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccc
Q 047623          166 SPDFILIDCPAGID--A------GFITAI--TPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKG  235 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~------~~~~~l--~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~  235 (340)
                      .+.+.|+|+|+...  .      .....+  ..+|.++++++.+..  .....+...+.+.+ ..+.+++|+.+......
T Consensus        51 ~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~-~pvilv~NK~Dl~~~~~  127 (258)
T 3a1s_A           51 GYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNP--EQSLYLLLEILEME-KKVILAMTAIDEAKKTG  127 (258)
T ss_dssp             TEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSC--HHHHHHHHHHHTTT-CCEEEEEECHHHHHHTT
T ss_pred             CeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCch--hhHHHHHHHHHhcC-CCEEEEEECcCCCCccc
Confidence            47889999999532  1      223333  479999999887643  22333444555444 35779999988532111


Q ss_pred             cccccHHHHHHHhCCceeEEec
Q 047623          236 EDMMSVLDIQEMLGLALLGVIP  257 (340)
Q Consensus       236 ~~~~~~~~i~~~~g~~v~~~Ip  257 (340)
                       .......+.+.+|.+++.+-.
T Consensus       128 -i~~~~~~l~~~lg~~vi~~SA  148 (258)
T 3a1s_A          128 -MKIDRYELQKHLGIPVVFTSS  148 (258)
T ss_dssp             -CCBCHHHHHHHHCSCEEECCT
T ss_pred             -hHHHHHHHHHHcCCCEEEEEe
Confidence             113467888899988775443

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=82.39  E-value=1.1  Score=37.69  Aligned_cols=35  Identities=31%  Similarity=0.501  Sum_probs=29.6

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      +|++.|+|+.||.|+     .+|..|+++|.+|.+++-+.
T Consensus         2 ~k~vlITGas~gIG~-----~ia~~l~~~G~~V~~~~r~~   36 (235)
T 3l77_A            2 MKVAVITGASRGIGE-----AIARALARDGYALALGARSV   36 (235)
T ss_dssp             CCEEEEESCSSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence            578999999999887     47888889999999988664

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=82.33  E-value=1.3  Score=43.37  Aligned_cols=33  Identities=30%  Similarity=0.346  Sum_probs=25.7

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHH----CCCcEEEE
Q 047623           53 VVITSGKGGVGKTTTTANVGLSLAR----LGFSVVAI   85 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~la~----~g~~Vlli   85 (340)
                      +.+..+..|+||||++..+...+.+    .|.+|+++
T Consensus       166 ~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~  202 (608)
T 1w36_D          166 ISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLA  202 (608)
T ss_dssp             EEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEE
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEE
Confidence            4455588999999999999988874    36677765

>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*

Probab=82.30  E-value=1.4  Score=41.96  Aligned_cols=49  Identities=16%  Similarity=0.152  Sum_probs=36.1

Q ss_pred             hhHHHHHhhCCCCCCCCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEE
Q 047623           31 SSIQSVLQWNRKPELAGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAI   85 (340)
Q Consensus        31 ~~~~~~l~~~~~~~~~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vlli   85 (340)
                      ..++..++.--.+   ....++|.|+|+   -||||++.-|+..|.+.|++|.++
T Consensus        48 ~r~~~ll~~lg~p---~~~~~vI~VtGT---NGKtST~~~l~~iL~~~G~~vG~~   96 (487)
T 2vos_A           48 TRISALMDLLGSP---QRSYPSIHIAGT---NGKTSVARMVDALVTALHRRTGRT   96 (487)
T ss_dssp             HHHHHHHHHTTCG---GGSSCEEEEECS---SSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             HHHHHHHHHcCCc---hhcCeEEEEeCC---CCcHHHHHHHHHHHHHcCCCeEEE
Confidence            3445555443222   234579999976   489999999999999999999776

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=82.29  E-value=1.1  Score=37.08  Aligned_cols=22  Identities=27%  Similarity=0.406  Sum_probs=17.7

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHH
Q 047623           53 VVITSGKGGVGKTTTTANVGLSL   75 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~l   75 (340)
                      |.++ +-.|+||||+|..||..+
T Consensus         3 I~l~-G~~GsGKsT~a~~L~~~~   24 (216)
T 3fb4_A            3 IVLM-GLPGAGKGTQAEQIIEKY   24 (216)
T ss_dssp             EEEE-CSTTSSHHHHHHHHHHHH
T ss_pred             EEEE-CCCCCCHHHHHHHHHHHh
Confidence            4454 788999999999998765

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=82.27  E-value=2  Score=33.88  Aligned_cols=65  Identities=12%  Similarity=-0.037  Sum_probs=42.4

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHH-HHHHHHHhc-CCCceEEEEecccC
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDAD-RVTGLLECD-GIRDIKMVVNRVRT  230 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~-~~~~~l~~~-~~~~~~vviN~~~~  230 (340)
                      .+.+.|+|+|+..  .......+..+|.++++...+ ..++..+. .+++.+... ....+.+|.|+.+-
T Consensus        55 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl  124 (182)
T 3bwd_D           55 TVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDL  124 (182)
T ss_dssp             ---CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHH
T ss_pred             EEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhh
Confidence            3667899999853  333344567799999998874 55666665 466666653 23457799999875

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=82.23  E-value=1.1  Score=38.39  Aligned_cols=37  Identities=19%  Similarity=0.242  Sum_probs=31.1

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      .+|++.|+|+.||.|+     .+|..|+++|.+|.++|-+..
T Consensus         6 ~~k~vlVTGas~GIG~-----aia~~l~~~G~~V~~~~r~~~   42 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGA-----EIAKKFAAEGFTVFAGRRNGE   42 (252)
T ss_dssp             CSCEEEEECCSSHHHH-----HHHHHHHHTTCEEEEEESSGG
T ss_pred             CCCEEEEECCCchHHH-----HHHHHHHHCCCEEEEEeCCHH
Confidence            4589999999999987     478888999999999987643

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=82.22  E-value=1.1  Score=37.95  Aligned_cols=36  Identities=25%  Similarity=0.386  Sum_probs=29.7

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      ++|++.|+|+.||.|+     .+|..|+++|.+|.++|-+.
T Consensus         1 ~~k~vlItGasggiG~-----~~a~~l~~~G~~V~~~~r~~   36 (250)
T 2cfc_A            1 MSRVAIVTGASSGNGL-----AIATRFLARGDRVAALDLSA   36 (250)
T ss_dssp             CCCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeCCCchHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence            3578999999999887     47778888999999998653

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=82.16  E-value=1.2  Score=38.12  Aligned_cols=37  Identities=30%  Similarity=0.476  Sum_probs=31.5

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      .+|++.|+|+.||.|+.     +|..|++.|.+|.++|-+..
T Consensus         6 ~~k~~lVTGas~gIG~a-----ia~~l~~~G~~V~~~~r~~~   42 (257)
T 3tpc_A            6 KSRVFIVTGASSGLGAA-----VTRMLAQEGATVLGLDLKPP   42 (257)
T ss_dssp             TTCEEEEESTTSHHHHH-----HHHHHHHTTCEEEEEESSCC
T ss_pred             CCCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEeCChH
Confidence            35899999999999974     78888999999999987754

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=82.13  E-value=3.8  Score=38.15  Aligned_cols=145  Identities=14%  Similarity=0.112  Sum_probs=68.3

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccc
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKR  127 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  127 (340)
                      +..+-|.++ +-.|+|||++|..+|..+   |.+...+++..   -.+.+.|...   ..+.+++.........+..   
T Consensus       204 ~~prGiLL~-GPPGtGKT~lakAiA~~~---~~~~~~v~~~~---l~~~~~Ge~e---~~ir~lF~~A~~~aP~Iif---  270 (428)
T 4b4t_K          204 DPPRGVLLY-GPPGTGKTMLVKAVANST---KAAFIRVNGSE---FVHKYLGEGP---RMVRDVFRLARENAPSIIF---  270 (428)
T ss_dssp             CCCCEEEEE-SCTTTTHHHHHHHHHHHH---TCEEEEEEGGG---TCCSSCSHHH---HHHHHHHHHHHHTCSEEEE---
T ss_pred             CCCceEEEE-CCCCCCHHHHHHHHHHHh---CCCeEEEecch---hhccccchhH---HHHHHHHHHHHHcCCCeee---
Confidence            344566666 778999999999988765   66777776542   2233333221   1222332211111111111   


Q ss_pred             cCceeEeecCCCCCCCCCCc-chhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHh--cCCeEEEE-eCCChhhH
Q 047623          128 WSNFELLCISKPRSKLPLGF-GGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAIT--PANEAVLV-TTPDITSL  203 (340)
Q Consensus       128 ~~~l~~l~~~~~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~--~ad~viiv-~~~~~~s~  203 (340)
                      ++.++-+............. ....+..++..+.. ....-+++||=+.+..+....+.+.  .-|..|-+ .-|+....
T Consensus       271 iDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg-~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R  349 (428)
T 4b4t_K          271 IDEVDSIATKRFDAQTGSDREVQRILIELLTQMDG-FDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRER  349 (428)
T ss_dssp             EECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHH-SCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHH
T ss_pred             chhhhhhhccccCCCCCCChHHHHHHHHHHHHhhC-CCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHH
Confidence            13333332222111111100 11123344555543 2344567787777766555556665  45655533 45666554


Q ss_pred             HHH
Q 047623          204 RDA  206 (340)
Q Consensus       204 ~~~  206 (340)
                      ...
T Consensus       350 ~~I  352 (428)
T 4b4t_K          350 RLI  352 (428)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=82.12  E-value=1.2  Score=37.50  Aligned_cols=38  Identities=26%  Similarity=0.323  Sum_probs=27.9

Q ss_pred             CCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           46 AGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      ..+.+.+|++. +.-|+||||++..|+..    +.+|.+..-+
T Consensus        16 ~~~~g~~i~i~-G~~GsGKSTl~~~L~~~----~g~v~~~~~~   53 (230)
T 2vp4_A           16 EGTQPFTVLIE-GNIGSGKTTYLNHFEKY----KNDICLLTEP   53 (230)
T ss_dssp             TTCCCEEEEEE-CSTTSCHHHHHHTTGGG----TTTEEEECCT
T ss_pred             CCCCceEEEEE-CCCCCCHHHHHHHHHhc----cCCeEEEecC
Confidence            34567888888 67788999998888765    5577776543

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=81.96  E-value=1.1  Score=38.40  Aligned_cols=36  Identities=31%  Similarity=0.555  Sum_probs=29.8

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      |+|++.|+|+.||.|+.     +|..|+++|.+|.++|-+.
T Consensus         1 m~k~vlVTGas~gIG~~-----ia~~l~~~G~~V~~~~r~~   36 (256)
T 1geg_A            1 MKKVALVTGAGQGIGKA-----IALRLVKDGFAVAIADYND   36 (256)
T ss_dssp             -CCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCChHHHH-----HHHHHHHCCCEEEEEeCCH
Confidence            35789999999999974     7888899999999987653

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=81.81  E-value=0.95  Score=38.02  Aligned_cols=36  Identities=31%  Similarity=0.586  Sum_probs=30.1

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      ++++.|+|+.||.|+     .+|..|+++|.+|.++|-+..
T Consensus         2 ~k~vlVtGasggiG~-----~la~~l~~~G~~V~~~~r~~~   37 (242)
T 1uay_A            2 ERSALVTGGASGLGR-----AAALALKARGYRVVVLDLRRE   37 (242)
T ss_dssp             CCEEEEETTTSHHHH-----HHHHHHHHHTCEEEEEESSCC
T ss_pred             CCEEEEeCCCChHHH-----HHHHHHHHCCCEEEEEccCcc
Confidence            578999999999887     467788888999999987754

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=81.80  E-value=1.2  Score=37.44  Aligned_cols=36  Identities=25%  Similarity=0.481  Sum_probs=30.9

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      +|++.|+|+.||.|+     .+|..|+++|.+|.++|-+..
T Consensus         3 ~k~vlITGas~gIG~-----~~a~~l~~~G~~V~~~~r~~~   38 (236)
T 1ooe_A            3 SGKVIVYGGKGALGS-----AILEFFKKNGYTVLNIDLSAN   38 (236)
T ss_dssp             CEEEEEETTTSHHHH-----HHHHHHHHTTEEEEEEESSCC
T ss_pred             CCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEecCcc
Confidence            478999999999887     478888999999999987764

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=81.79  E-value=0.98  Score=36.43  Aligned_cols=25  Identities=20%  Similarity=0.348  Sum_probs=19.7

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHH
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSL   75 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~l   75 (340)
                      +++++++ +..|+||||++..|+..+
T Consensus         5 g~~i~i~-GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            5 RKTLVLL-GAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             CCEEEEE-CCTTSSHHHHHHHHHHHC
T ss_pred             CCEEEEE-CCCCCCHHHHHHHHHhhC
Confidence            4566666 778999999999988765

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=81.76  E-value=3.1  Score=36.68  Aligned_cols=66  Identities=12%  Similarity=0.034  Sum_probs=43.6

Q ss_pred             CCCEEEEcCCCCCC-------HHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHh---c-CCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGID-------AGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLEC---D-GIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~-------~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~---~-~~~~~~vviN~~~~~  231 (340)
                      .+.+.|+|+|+...       ......+..+|.+++|.+.+ ..+...+..+.+.+..   . ....+.+|.|+.+-.
T Consensus        51 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~  128 (307)
T 3r7w_A           51 NMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLV  128 (307)
T ss_dssp             TEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred             ceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEeccccc
Confidence            47889999998542       23344557899999999875 4455665554444432   2 234678999999864

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=81.59  E-value=1.2  Score=38.45  Aligned_cols=37  Identities=35%  Similarity=0.455  Sum_probs=31.3

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      .+|++.|+|+.||.|+     .+|..|+++|.+|.++|-+..
T Consensus        10 ~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~~   46 (271)
T 3tzq_B           10 ENKVAIITGACGGIGL-----ETSRVLARAGARVVLADLPET   46 (271)
T ss_dssp             TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEECTTS
T ss_pred             CCCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEcCCHH
Confidence            3589999999999987     478888999999999987754

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=81.55  E-value=1.3  Score=36.64  Aligned_cols=37  Identities=8%  Similarity=0.127  Sum_probs=30.1

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEecCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLA-RLGFSVVAIDADV   89 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la-~~g~~VlliD~D~   89 (340)
                      .|+|.|.|+|+.||.|+.     ++..|+ +.|++|.+++-++
T Consensus         3 ~mmk~vlVtGasg~iG~~-----~~~~l~~~~g~~V~~~~r~~   40 (221)
T 3r6d_A            3 AMYXYITILGAAGQIAQX-----LTATLLTYTDMHITLYGRQL   40 (221)
T ss_dssp             CSCSEEEEESTTSHHHHH-----HHHHHHHHCCCEEEEEESSH
T ss_pred             ceEEEEEEEeCCcHHHHH-----HHHHHHhcCCceEEEEecCc
Confidence            467889999999999974     666777 7899999987663

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=81.42  E-value=2.1  Score=38.58  Aligned_cols=65  Identities=18%  Similarity=0.189  Sum_probs=45.6

Q ss_pred             CCEEEEcCCCC---------CCHHHHHHHhcCCeEEEEeCCC----hhhHHHHHHHHHHHHhcC----CCceEEEEeccc
Q 047623          167 PDFILIDCPAG---------IDAGFITAITPANEAVLVTTPD----ITSLRDADRVTGLLECDG----IRDIKMVVNRVR  229 (340)
Q Consensus       167 ~D~VIiD~~~~---------~~~~~~~~l~~ad~viiv~~~~----~~s~~~~~~~~~~l~~~~----~~~~~vviN~~~  229 (340)
                      ..++|+|+|+.         +.......+..+|.++++++.+    ..++..+..+.+.+....    ...+.+|+|+++
T Consensus       206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~D  285 (342)
T 1lnz_A          206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMD  285 (342)
T ss_dssp             CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTT
T ss_pred             ceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECcc
Confidence            67899999872         2122333445699999999875    356777777777777643    245779999998


Q ss_pred             CC
Q 047623          230 TD  231 (340)
Q Consensus       230 ~~  231 (340)
                      ..
T Consensus       286 l~  287 (342)
T 1lnz_A          286 MP  287 (342)
T ss_dssp             ST
T ss_pred             CC
Confidence            64

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=81.32  E-value=1.2  Score=38.86  Aligned_cols=37  Identities=30%  Similarity=0.463  Sum_probs=30.5

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      -.+|++.|+|+.||.|+.     +|..|++.|.+|.++|-+.
T Consensus        26 ~~~k~~lVTGas~GIG~a-----ia~~la~~G~~V~~~~r~~   62 (283)
T 3v8b_A           26 QPSPVALITGAGSGIGRA-----TALALAADGVTVGALGRTR   62 (283)
T ss_dssp             -CCCEEEEESCSSHHHHH-----HHHHHHHTTCEEEEEESSH
T ss_pred             CCCCEEEEECCCCHHHHH-----HHHHHHHCCCEEEEEeCCH
Confidence            345899999999999874     7788899999999998664

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=81.29  E-value=1.4  Score=34.49  Aligned_cols=66  Identities=6%  Similarity=-0.038  Sum_probs=44.1

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCCh-hhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPDI-TSLRDADRVTGLLECD---GIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~  231 (340)
                      .+.+.++|+|+..  .......+..+|.++++.+.+. .++......+..+...   ....+.+|.|+.+-.
T Consensus        50 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  121 (171)
T 1upt_A           50 NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDME  121 (171)
T ss_dssp             TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred             CEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCc
Confidence            3678999999853  2233445677999999988753 4566666555554432   234678999999864

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=81.24  E-value=1.2  Score=37.57  Aligned_cols=37  Identities=22%  Similarity=0.352  Sum_probs=31.2

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      .+|++.|+|+.||.|+.     +|..|+++|.+|.++|-+..
T Consensus         6 ~~k~vlVTGas~gIG~~-----ia~~l~~~G~~V~~~~r~~~   42 (241)
T 1dhr_A            6 EARRVLVYGGRGALGSR-----CVQAFRARNWWVASIDVVEN   42 (241)
T ss_dssp             CCCEEEEETTTSHHHHH-----HHHHHHTTTCEEEEEESSCC
T ss_pred             CCCEEEEECCCcHHHHH-----HHHHHHhCCCEEEEEeCChh
Confidence            45789999999998884     77888899999999987764

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=81.23  E-value=1.5  Score=36.28  Aligned_cols=27  Identities=26%  Similarity=0.361  Sum_probs=21.3

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARL   78 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~   78 (340)
                      +.+.++ +..|+||||++..++..+...
T Consensus        46 ~~~ll~-G~~G~GKT~l~~~~~~~~~~~   72 (250)
T 1njg_A           46 HAYLFS-GTRGVGKTSIARLLAKGLNCE   72 (250)
T ss_dssp             SEEEEE-CSTTSCHHHHHHHHHHHHHCT
T ss_pred             eEEEEE-CCCCCCHHHHHHHHHHHhcCC
Confidence            455555 788999999999999887643

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=81.10  E-value=1.1  Score=38.63  Aligned_cols=33  Identities=36%  Similarity=0.502  Sum_probs=24.4

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      +++|+++ +..|+||||++..||..+   |.  -++|.|
T Consensus        48 g~~i~l~-G~~GsGKSTl~~~La~~l---g~--~~~d~d   80 (250)
T 3nwj_A           48 GRSMYLV-GMMGSGKTTVGKIMARSL---GY--TFFDCD   80 (250)
T ss_dssp             TCCEEEE-CSTTSCHHHHHHHHHHHH---TC--EEEEHH
T ss_pred             CCEEEEE-CCCCCCHHHHHHHHHHhc---CC--cEEeCc
Confidence            4567777 677899999999998876   32  356665

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=81.02  E-value=1.4  Score=37.39  Aligned_cols=36  Identities=33%  Similarity=0.538  Sum_probs=30.7

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      ..|++.|+|+.||.|+     .+|..|+++|.+|.++|-+.
T Consensus         8 ~~k~vlITGas~giG~-----~~a~~l~~~G~~V~~~~r~~   43 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQ-----AYAEALAREGAAVVVADINA   43 (253)
T ss_dssp             TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCChHHH-----HHHHHHHHCCCEEEEEcCCH
Confidence            4589999999999887     58888999999999988654

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=80.96  E-value=1  Score=38.99  Aligned_cols=35  Identities=23%  Similarity=0.426  Sum_probs=30.0

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      +|++.|+|+.||.|+.     +|..|++.|.+|.++|-+.
T Consensus         4 ~k~~lVTGas~GIG~a-----ia~~la~~G~~V~~~~r~~   38 (264)
T 3tfo_A            4 DKVILITGASGGIGEG-----IARELGVAGAKILLGARRQ   38 (264)
T ss_dssp             TCEEEESSTTSHHHHH-----HHHHHHHTTCEEEEEESSH
T ss_pred             CCEEEEeCCccHHHHH-----HHHHHHHCCCEEEEEECCH
Confidence            5799999999999974     7888899999999998664

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=80.95  E-value=1.1  Score=37.02  Aligned_cols=26  Identities=19%  Similarity=0.327  Sum_probs=19.1

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHH
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSL   75 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~l   75 (340)
                      .+++|++ .+..|+||||+...|+..+
T Consensus        18 ~g~~ivl-~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           18 GRKTLVL-IGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             SCCEEEE-ECCTTSSHHHHHHHHHHHC
T ss_pred             CCCEEEE-ECcCCCCHHHHHHHHHhhC
Confidence            3455555 4788899999998887653

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=80.92  E-value=1.4  Score=38.21  Aligned_cols=36  Identities=25%  Similarity=0.417  Sum_probs=30.6

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      .+|++.|+|+.||.|+.     +|..|+++|.+|.++|-+.
T Consensus        29 ~~k~vlVTGas~GIG~a-----ia~~l~~~G~~Vi~~~r~~   64 (281)
T 3ppi_A           29 EGASAIVSGGAGGLGEA-----TVRRLHADGLGVVIADLAA   64 (281)
T ss_dssp             TTEEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCChHHHH-----HHHHHHHCCCEEEEEeCCh
Confidence            35899999999998874     7888889999999998764

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=80.87  E-value=6.5  Score=31.15  Aligned_cols=66  Identities=6%  Similarity=-0.018  Sum_probs=44.7

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD---GIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~  231 (340)
                      .+.+.++|+|+...  ......+..+|.++++.+.. ..++..+...+..+...   ....+.+|.|+.+-.
T Consensus        59 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~  130 (181)
T 1fzq_A           59 GFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLL  130 (181)
T ss_dssp             TEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTST
T ss_pred             CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcc
Confidence            36788999998542  33455667899999998865 45666666555544321   234678999999864

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=80.87  E-value=2.4  Score=33.51  Aligned_cols=79  Identities=9%  Similarity=0.072  Sum_probs=48.8

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc---CCCceEEEEecccCCcccccccc
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD---GIRDIKMVVNRVRTDMIKGEDMM  239 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~~~~~~~~~  239 (340)
                      .+.+.|+|+|+..  .......+..+|.++++.+.+ ..++..+...+..+...   ....+.+|.|+.+-...     .
T Consensus        61 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~-----~  135 (183)
T 1moz_A           61 NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA-----L  135 (183)
T ss_dssp             TEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC-----C
T ss_pred             CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC-----C
Confidence            3678899999853  333344567789999998864 45677766666655432   23467899999986431     1


Q ss_pred             cHHHHHHHhC
Q 047623          240 SVLDIQEMLG  249 (340)
Q Consensus       240 ~~~~i~~~~g  249 (340)
                      ...++.+.++
T Consensus       136 ~~~~i~~~~~  145 (183)
T 1moz_A          136 SASEVSKELN  145 (183)
T ss_dssp             CHHHHHHHTT
T ss_pred             CHHHHHHHhC
Confidence            2445555555

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=80.82  E-value=1.6  Score=37.84  Aligned_cols=38  Identities=26%  Similarity=0.433  Sum_probs=32.2

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      -.+|++.|+|+.||.|+     .+|..|+++|.+|.++|.+..
T Consensus         8 l~gk~vlVTGas~gIG~-----~ia~~l~~~G~~V~~~~~~~~   45 (287)
T 3pxx_A            8 VQDKVVLVTGGARGQGR-----SHAVKLAEEGADIILFDICHD   45 (287)
T ss_dssp             TTTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEEECCSC
T ss_pred             cCCCEEEEeCCCChHHH-----HHHHHHHHCCCeEEEEccccc
Confidence            34689999999999887     488889999999999998754

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=80.80  E-value=1.2  Score=38.74  Aligned_cols=36  Identities=31%  Similarity=0.452  Sum_probs=30.7

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      .+|++.|+|+.||.|+     .+|..|++.|.+|.++|-+.
T Consensus        28 ~gk~vlVTGas~gIG~-----aia~~la~~G~~V~~~~r~~   63 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGL-----AVARRLADEGCHVLCADIDG   63 (277)
T ss_dssp             TTCEEEETTTTSTHHH-----HHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCCcHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence            3589999999999998     47888899999999998664

>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}

Probab=80.77  E-value=2.4  Score=36.70  Aligned_cols=42  Identities=2%  Similarity=-0.121  Sum_probs=33.6

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      ..+.++.+.++-|| ||||++.+++...+++|-+++++-++..
T Consensus        19 ~~gs~~li~g~p~~-~~~~l~~qfl~~g~~~Ge~~~~~~~~e~   60 (260)
T 3bs4_A           19 KHSLILIHEEDASS-RGKDILFYILSRKLKSDNLVGMFSISYP   60 (260)
T ss_dssp             TTCEEEEEECSGGG-CHHHHHHHHHHHHHHTTCEEEEEECSSC
T ss_pred             CCCcEEEEEeCCCc-cHHHHHHHHHHHHHHCCCcEEEEEEeCC
Confidence            45567777655555 5559999999999999999999999865

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=80.69  E-value=1  Score=38.55  Aligned_cols=35  Identities=23%  Similarity=0.229  Sum_probs=29.6

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      ||++.|+|+.||.|+.     +|..|+++|.+|.++|-+.
T Consensus         1 Mk~vlVTGas~gIG~~-----ia~~l~~~G~~V~~~~r~~   35 (254)
T 1zmt_A            1 MSTAIVTNVKHFGGMG-----SALRLSEAGHTVACHDESF   35 (254)
T ss_dssp             -CEEEESSTTSTTHHH-----HHHHHHHTTCEEEECCGGG
T ss_pred             CeEEEEeCCCchHHHH-----HHHHHHHCCCEEEEEeCCH
Confidence            4789999999999984     7888889999999987664

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=80.64  E-value=1.5  Score=38.06  Aligned_cols=37  Identities=30%  Similarity=0.483  Sum_probs=31.1

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      -.+|++.|+|+.||.|+.     +|..|+++|.+|.++|-+.
T Consensus        25 l~~k~vlVTGas~GIG~a-----ia~~l~~~G~~V~~~~r~~   61 (277)
T 4dqx_A           25 LNQRVCIVTGGGSGIGRA-----TAELFAKNGAYVVVADVNE   61 (277)
T ss_dssp             TTTCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESSH
T ss_pred             CCCCEEEEECCCcHHHHH-----HHHHHHHCCCEEEEEeCCH
Confidence            346899999999999884     7888899999999998653

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=80.58  E-value=2.7  Score=33.38  Aligned_cols=66  Identities=9%  Similarity=0.076  Sum_probs=44.6

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc---CCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD---GIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~  231 (340)
                      .+.+.|+|+|+...  ......+..+|.++++.+.+ ..++..+...+..+...   ....+.+|.|+.+-.
T Consensus        61 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  132 (186)
T 1ksh_A           61 GFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLP  132 (186)
T ss_dssp             TEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTST
T ss_pred             CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCC
Confidence            47789999998532  12233456799999998875 44677776666555432   234678999999864

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=80.50  E-value=1.3  Score=37.38  Aligned_cols=36  Identities=33%  Similarity=0.517  Sum_probs=29.1

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      ||++.|+|+.||.|+.     ++..|+++|++|.++|-+..
T Consensus         1 Mk~vlVtGasg~iG~~-----l~~~L~~~g~~V~~~~r~~~   36 (255)
T 2dkn_A            1 MSVIAITGSASGIGAA-----LKELLARAGHTVIGIDRGQA   36 (255)
T ss_dssp             -CEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESSSS
T ss_pred             CcEEEEeCCCcHHHHH-----HHHHHHhCCCEEEEEeCChh
Confidence            4679999999988875     67778889999999987654

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=80.31  E-value=1.3  Score=38.29  Aligned_cols=37  Identities=30%  Similarity=0.389  Sum_probs=31.8

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      .+|++.|+|+.||.|+.     +|..|+++|.+|.++|.+..
T Consensus        12 ~gk~vlVTGas~gIG~~-----ia~~l~~~G~~V~~~~r~~~   48 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRA-----HAVRLAADGADIIAVDLCDQ   48 (278)
T ss_dssp             TTCEEEEESTTSHHHHH-----HHHHHHHTTCEEEEEECCSC
T ss_pred             CCCEEEEECCCChHHHH-----HHHHHHHCCCeEEEEecccc
Confidence            45899999999999974     78888999999999998754

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=80.29  E-value=1.8  Score=35.10  Aligned_cols=27  Identities=26%  Similarity=0.318  Sum_probs=20.0

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCc
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFS   81 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~   81 (340)
                      ++-+.+. +..|+||||+|..|..    +|++
T Consensus        16 G~gvli~-G~SGaGKStlal~L~~----rG~~   42 (181)
T 3tqf_A           16 KMGVLIT-GEANIGKSELSLALID----RGHQ   42 (181)
T ss_dssp             TEEEEEE-ESSSSSHHHHHHHHHH----TTCE
T ss_pred             CEEEEEE-cCCCCCHHHHHHHHHH----cCCe
Confidence            4566676 6778899999987765    6764

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=80.27  E-value=4.8  Score=32.56  Aligned_cols=78  Identities=18%  Similarity=0.179  Sum_probs=49.8

Q ss_pred             CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhc---CCCceEEEEecccCCccccccccc
Q 047623          167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECD---GIRDIKMVVNRVRTDMIKGEDMMS  240 (340)
Q Consensus       167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~~vviN~~~~~~~~~~~~~~  240 (340)
                      +++.++|+|+..  .......+..+|.++++.+.. ..++..+...+..+...   ....+.+|.|+.+-..     ...
T Consensus        69 ~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~-----~~~  143 (198)
T 1f6b_A           69 MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE-----AIS  143 (198)
T ss_dssp             EEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT-----CCC
T ss_pred             EEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc-----cCC
Confidence            678899999843  223344567899999998875 45677776666655432   2345789999998643     123


Q ss_pred             HHHHHHHhC
Q 047623          241 VLDIQEMLG  249 (340)
Q Consensus       241 ~~~i~~~~g  249 (340)
                      .+++.+.++
T Consensus       144 ~~~~~~~~~  152 (198)
T 1f6b_A          144 EERLREMFG  152 (198)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhC
Confidence            445555554

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=80.26  E-value=1.6  Score=37.41  Aligned_cols=36  Identities=25%  Similarity=0.443  Sum_probs=30.5

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      .+|++.|+|+.||.|+.     +|..|+++|.+|.++|-+.
T Consensus         7 ~~k~vlVTGas~gIG~~-----ia~~l~~~G~~V~~~~r~~   42 (259)
T 4e6p_A            7 EGKSALITGSARGIGRA-----FAEAYVREGATVAIADIDI   42 (259)
T ss_dssp             TTCEEEEETCSSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCCcHHHHH-----HHHHHHHCCCEEEEEeCCH
Confidence            35789999999999874     7888899999999998764

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=80.19  E-value=1.5  Score=37.46  Aligned_cols=37  Identities=24%  Similarity=0.349  Sum_probs=31.3

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      ++|++.|+|+.||.|+.     +|..|+++|.+|.+++-+..
T Consensus        20 ~~k~vlVTGas~gIG~a-----ia~~l~~~G~~V~~~~r~~~   56 (253)
T 2nm0_A           20 MSRSVLVTGGNRGIGLA-----IARAFADAGDKVAITYRSGE   56 (253)
T ss_dssp             CCCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESSSC
T ss_pred             CCCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEeCChH
Confidence            45899999999999984     77888899999999987654

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=80.17  E-value=1.3  Score=37.80  Aligned_cols=36  Identities=25%  Similarity=0.452  Sum_probs=30.3

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      .+|++.|+|+.||.|+     .+|..|+++|.+|.++|-+.
T Consensus         5 ~gk~vlVTGas~gIG~-----a~a~~l~~~G~~V~~~~r~~   40 (247)
T 3rwb_A            5 AGKTALVTGAAQGIGK-----AIAARLAADGATVIVSDINA   40 (247)
T ss_dssp             TTCEEEEETTTSHHHH-----HHHHHHHHTTCEEEEECSCH
T ss_pred             CCCEEEEECCCCHHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence            3589999999999987     47888899999999987653

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=80.16  E-value=1.4  Score=38.02  Aligned_cols=36  Identities=25%  Similarity=0.385  Sum_probs=31.3

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      ..|++.|+|+.+|.|+.     +|..|++.|.+|.+.|.+.
T Consensus         6 ~gKvalVTGas~GIG~a-----iA~~la~~Ga~Vv~~~~~~   41 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRA-----IAKKFALNDSIVVAVELLE   41 (254)
T ss_dssp             TTCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeCCCCHHHHH-----HHHHHHHcCCEEEEEECCH
Confidence            35899999999999985     7788899999999998764

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=80.15  E-value=1.5  Score=35.90  Aligned_cols=27  Identities=41%  Similarity=0.479  Sum_probs=22.8

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCC
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARLG   79 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~g   79 (340)
                      +++++ +..|+||||+..-|+..+...|
T Consensus         3 ~i~i~-G~nG~GKTTll~~l~g~~~~~G   29 (189)
T 2i3b_A            3 HVFLT-GPPGVGKTTLIHKASEVLKSSG   29 (189)
T ss_dssp             CEEEE-SCCSSCHHHHHHHHHHHHHHTT
T ss_pred             EEEEE-CCCCChHHHHHHHHHhhcccCC
Confidence            56666 6778999999999999988667

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=80.13  E-value=1.3  Score=37.56  Aligned_cols=39  Identities=23%  Similarity=0.372  Sum_probs=32.1

Q ss_pred             CCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           46 AGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      .....|.+.|+|+.||.|+     .+|..|+++|.+|.++|-+.
T Consensus        10 ~~~~~k~vlVTGas~gIG~-----~~a~~l~~~G~~V~~~~r~~   48 (249)
T 3f9i_A           10 IDLTGKTSLITGASSGIGS-----AIARLLHKLGSKVIISGSNE   48 (249)
T ss_dssp             CCCTTCEEEETTTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCCCEEEEECCCChHHH-----HHHHHHHHCCCEEEEEcCCH
Confidence            3456789999999999887     47788889999999988653

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=80.12  E-value=1.3  Score=36.73  Aligned_cols=23  Identities=39%  Similarity=0.479  Sum_probs=17.5

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHH
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGL   73 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~   73 (340)
                      ++.|.|+ +..|+||||+|..|+.
T Consensus        34 g~~ilI~-GpsGsGKStLA~~La~   56 (205)
T 2qmh_A           34 GLGVLIT-GDSGVGKSETALELVQ   56 (205)
T ss_dssp             TEEEEEE-CCCTTTTHHHHHHHHT
T ss_pred             CEEEEEE-CCCCCCHHHHHHHHHH
Confidence            4566666 6788999999877664

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=80.11  E-value=1.2  Score=39.49  Aligned_cols=40  Identities=33%  Similarity=0.346  Sum_probs=33.2

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLR   92 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~   92 (340)
                      -.+|++.|+|+.||.|+.     +|..|+++|.+|.++|.+....
T Consensus        44 l~gk~~lVTGas~GIG~a-----ia~~la~~G~~Vv~~~~~~~~~   83 (317)
T 3oec_A           44 LQGKVAFITGAARGQGRT-----HAVRLAQDGADIVAIDLCRQQP   83 (317)
T ss_dssp             TTTCEEEESSCSSHHHHH-----HHHHHHHTTCEEEEEECCCCCT
T ss_pred             cCCCEEEEeCCCcHHHHH-----HHHHHHHCCCeEEEEecccccc
Confidence            346899999999999974     7888899999999999876533

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=80.10  E-value=1.4  Score=37.64  Aligned_cols=36  Identities=22%  Similarity=0.601  Sum_probs=30.5

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      ..|++.|+|+.||.|+     .+|..|+++|.+|.++|-+.
T Consensus        11 ~~k~vlVTGas~gIG~-----aia~~l~~~G~~V~~~~r~~   46 (252)
T 3f1l_A           11 NDRIILVTGASDGIGR-----EAAMTYARYGATVILLGRNE   46 (252)
T ss_dssp             TTCEEEEESTTSHHHH-----HHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeCCCChHHH-----HHHHHHHHCCCEEEEEeCCH
Confidence            4589999999999987     47788889999999998664

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=80.07  E-value=4.4  Score=32.39  Aligned_cols=65  Identities=8%  Similarity=-0.098  Sum_probs=44.7

Q ss_pred             CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCC-hhhHHHHH-HHHHHHHhc-CCCceEEEEecccCC
Q 047623          167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTPD-ITSLRDAD-RVTGLLECD-GIRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~-~~s~~~~~-~~~~~l~~~-~~~~~~vviN~~~~~  231 (340)
                      +.+.|+|+|+..  .......+..+|.++++...+ ..++..+. .+++.+... ....+.+|.|+.+-.
T Consensus        66 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  135 (194)
T 2atx_A           66 YLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLR  135 (194)
T ss_dssp             EEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTST
T ss_pred             EEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhc
Confidence            678899999853  233344567799999998764 45566665 566666553 234677999998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	340
d1g3qa_	237	c.37.1.10 (A:) Cell division regulator MinD {Archa	3e-32
d1hyqa_	232	c.37.1.10 (A:) Cell division regulator MinD {Archa	7e-28
d1cp2a_	269	c.37.1.10 (A:) Nitrogenase iron protein {Clostridi	9e-28
d2afhe1	289	c.37.1.10 (E:1-289) Nitrogenase iron protein {Azot	4e-27
d1ihua2	279	c.37.1.10 (A:308-586) Arsenite-translocating ATPas	1e-21
d1ihua1	296	c.37.1.10 (A:1-296) Arsenite-translocating ATPase	1e-18
d1byia_	224	c.37.1.10 (A:) Dethiobiotin synthetase {Escherichi	1e-16
d1ls1a2	207	c.37.1.10 (A:89-295) GTPase domain of the signal s	4e-06
d1okkd2	207	c.37.1.10 (D:97-303) GTPase domain of the signal r	5e-05
d1j8yf2	211	c.37.1.10 (F:87-297) GTPase domain of the signal s	1e-04
d1vmaa2	213	c.37.1.10 (A:82-294) GTPase domain of the signal r	2e-04
d2qy9a2	211	c.37.1.10 (A:285-495) GTPase domain of the signal	3e-04

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 237

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score =  118 bits (296), Expect = 3e-32
 Identities = 74/244 (30%), Positives = 125/244 (51%), Gaps = 11/244 (4%)

Query: 51  RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVE 110
           R++ I SGKGG GKTT TAN+ ++L   G  V+A+D D+ + NL L+LG+++  + T+ +
Sbjct: 3   RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDP-DVTLHD 61

Query: 111 VLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFI 170
           VL G+  ++ A+   +  + +           +      KA    +  +    +   DFI
Sbjct: 62  VLAGEANVEDAIYMTQFDNVY------VLPGAVDWEHVLKADPRKLPEVIKSLKDKFDFI 115

Query: 171 LIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRT 230
           LIDCPAG+    ++A+    EA+LVT P+I+ L D  +V  +L+  G+  +  V+NR   
Sbjct: 116 LIDCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGR 175

Query: 231 DMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAW 290
                   +     ++++ + LL VIPED  +   T  G P V  KP +    AF + A 
Sbjct: 176 SD----RDIPPEAAEDVMEVPLLAVIPEDPAIREGTLEGIPAVKYKPESKGAKAFVKLAE 231

Query: 291 RLVE 294
            + +
Sbjct: 232 EIEK 235

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score =  106 bits (265), Expect = 7e-28
 Identities = 78/242 (32%), Positives = 126/242 (52%), Gaps = 12/242 (4%)

Query: 51  RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVE 110
           R + + SGKGG GKTT TAN+G++LA+LG  V  +DAD+ + NL+L+LG+E      +  
Sbjct: 2   RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLPVT-LQN 60

Query: 111 VLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFI 170
           VL G+ R+D+A+             +S    +       + +   +         S D +
Sbjct: 61  VLAGEARIDEAIYVGPGGVKVVPAGVSLEGLRKANPEKLEDVLTQI-------MESTDIL 113

Query: 171 LIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRT 230
           L+D PAG++   + AI  A E +LV  P+I+S+ D  +   + E  G + + +VVNR+ T
Sbjct: 114 LLDAPAGLERSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITT 173

Query: 231 DMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAAW 290
             I+         I+ +L   ++G+IPED EV R+   G P+VL  P + A  A  + A 
Sbjct: 174 LGIEMAKNE----IEAILEAKVIGLIPEDPEVRRAAAYGKPVVLRSPNSPAARAIVELAN 229

Query: 291 RL 292
            +
Sbjct: 230 YI 231

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} Length = 269

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

 Score =  107 bits (267), Expect = 9e-28
 Identities = 40/271 (14%), Positives = 97/271 (35%), Gaps = 12/271 (4%)

Query: 51  RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVE 110
           R V I  GKGG+GK+TTT N+   L  +G +++ +  D    +  LLLG   + +     
Sbjct: 2   RQVAI-YGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADSTRLLLGGLAQKSVLDTL 60

Query: 111 VLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALK--SRQEGSPD 168
              G+     +++   +     + C+     +  +G  G+ +   +  L+         D
Sbjct: 61  REEGEDVELDSIL---KEGYGGIRCVESGGPEPGVGCAGRGIITSINMLEQLGAYTDDLD 117

Query: 169 FILIDCPAGIDAGFITAI---TPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVV 225
           ++  D    +  G          A E  +V + ++ +L  A+ ++  ++         + 
Sbjct: 118 YVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLG 177

Query: 226 NRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAF 285
             +        +   +    + LG  L+  +P    V ++      ++   P       +
Sbjct: 178 GIICNSRKVANEYELLDAFAKELGSQLIHFVPRSPMVTKAEINKQTVIEYDPTCEQAEEY 237

Query: 286 EQAAWRLVEQDSMKAVMVEEEPKRRGFFSFF 316
            + A ++   +     ++ +   +       
Sbjct: 238 RELARKVDANELF---VIPKPMTQERLEEIL 265

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]} Length = 289

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

 Score =  106 bits (264), Expect = 4e-27
 Identities = 49/286 (17%), Positives = 100/286 (34%), Gaps = 11/286 (3%)

Query: 51  RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVE 110
           R   I  GKGG+GK+TTT N+  +LA +G  V+ +  D    +  L+L  + +     + 
Sbjct: 3   RQCAI-YGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTRLILHSKAQNTIMEMA 61

Query: 111 VLNGD-CRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDF 169
              G    L+   V    +   + +    P   +     G          +   E   DF
Sbjct: 62  AEAGTVEDLELEDVLKAGYGGVKCVESGGPEPGVGCAGRGVITAINFLEEEGAYEDDLDF 121

Query: 170 ILIDCPAGIDAGFITAI---TPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVN 226
           +  D    +  G          A E  +V + ++ ++  A+ ++  +          +  
Sbjct: 122 VFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGG 181

Query: 227 RVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFE 286
            +        +   ++ +   LG  ++  +P D+ V R+  R   ++   P       + 
Sbjct: 182 LICNSRNTDREDELIIALANKLGTQMIHFVPRDNVVQRAEIRRMTVIEYDPKAKQADEYR 241

Query: 287 QAAWRLVEQDSMKAVMVEEEP-KRRGFFSFFGL-GVLAVTVGLEVG 330
             A ++V+      ++V   P             G++ V     VG
Sbjct: 242 ALARKVVDN----KLLVIPNPITMDELEELLMEFGIMEVEDESIVG 283

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} Length = 279

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

 Score = 90.8 bits (224), Expect = 1e-21
 Identities = 37/228 (16%), Positives = 71/228 (31%), Gaps = 25/228 (10%)

Query: 51  RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVE 110
             +++  GKGGVGKTT  A + + LA +GF V    +D        L G  N +  + ++
Sbjct: 20  HGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAAHLSMTLNGSLNNLQVSRID 79

Query: 111 VLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFI 170
                 R  Q ++  K     E                  A+      +          +
Sbjct: 80  PHEETERYRQHVLETKGKELDEAGKRLLEEDLRSPCTEEIAVFQAFSRVIREAGKRFVVM 139

Query: 171 -------------------------LIDCPAGIDAGFITAITPANEAVLVTTPDITSLRD 205
                                    + +         +       + +LVT P+ T + +
Sbjct: 140 DTAPTGHTLLLLDATGAYHREIAKKMGEKGHFTTPMMLLQDPERTKVLLVTLPETTPVLE 199

Query: 206 ADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL 253
           A  +   LE  GI     ++N   +       ++ +   QE+  +  +
Sbjct: 200 AANLQADLERAGIHPWGWIINNSLSIADTRSPLLRMRAQQELPQIESV 247

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} Length = 296

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

 Score = 82.7 bits (203), Expect = 1e-18
 Identities = 36/278 (12%), Positives = 74/278 (26%), Gaps = 65/278 (23%)

Query: 50  PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVV 109
           P  +   +GKGGVGKT+ +    + LA  G  V+ +  D    N+  +           +
Sbjct: 8   PPYLFF-TGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPA-SNVGQVFSQTIGNTIQAI 65

Query: 110 EVLNG------DCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVV------- 156
             + G      D +      R +     + +      S +     G   T +        
Sbjct: 66  ASVPGLSALEIDPQAAAQQYRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTG 125

Query: 157 EALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAV----------------------- 193
               +      D I+ D         +  +  A  +                        
Sbjct: 126 LLTDASLLTRFDHIIFDTAPTGHTIRLLQLPGAWSSFIDSNPEGASCLGPMAGLEKQREQ 185

Query: 194 -----------------LVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGE 236
                            LV     ++L++  R    L   G+++  +V+N V        
Sbjct: 186 YAYAVEALSDPKRTRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLPKTEAAN 245

Query: 237 DMMS----------VLDIQEMLGLALLGVIPEDSEVIR 264
           D ++          + ++   L       +      + 
Sbjct: 246 DTLAAAIWEREQEALANLPADLAGLPTDTLFLQPVNMV 283

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} Length = 224

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

 Score = 75.5 bits (184), Expect = 1e-16
 Identities = 32/231 (13%), Positives = 69/231 (29%), Gaps = 18/231 (7%)

Query: 51  RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVE 110
           +   +T     VGKT  +  +  +    G+            +     GL N     +  
Sbjct: 2   KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPV-ASGSEKTPEGLRNSDALALQR 60

Query: 111 VLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFI 170
             +               + +     + P               +   L++ ++ + D++
Sbjct: 61  NSSLQLDYA-------TVNPYTFAEPTSPHIISAQEGRPIESLVMSAGLRALEQQA-DWV 112

Query: 171 LIDCPAGIDAGFITAIT-------PANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKM 223
           L++   G         T            +LV    +  +  A     +++  G+     
Sbjct: 113 LVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGW 172

Query: 224 VVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVL 274
           V N V     +  + M+   +  M+   LLG IP  +E   +   G  + L
Sbjct: 173 VANDVTPPGKRHAEYMT--TLTRMIPAPLLGEIPWLAENPENAATGKYINL 221

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

 Score = 44.7 bits (105), Expect = 4e-06
 Identities = 37/167 (22%), Positives = 58/167 (34%), Gaps = 9/167 (5%)

Query: 50  PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRN-LDLLLGLENRVNYTV 108
            R +    G  G GKTTT A + L     G   + + AD       + L  L  +V   V
Sbjct: 9   DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPV 68

Query: 109 VEVLNGDCRLDQA--LVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGS 166
           +EV++G+        +    R    +L+ +               L  + E L       
Sbjct: 69  LEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLG------ 122

Query: 167 PDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLL 213
           PD +L+   A      ++     +E V VT   +T L    R    L
Sbjct: 123 PDEVLLVLDAMTGQEALSVARAFDEKVGVTGLVLTKLDGDARGGAAL 169

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

 Score = 41.6 bits (97), Expect = 5e-05
 Identities = 36/169 (21%), Positives = 56/169 (33%), Gaps = 8/169 (4%)

Query: 50  PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVV 109
            RVV++  G  GVGKTTT A +G     LG  V+    D           L        +
Sbjct: 6   GRVVLV-VGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTF--RAAGGTQLSEWGKRLSI 62

Query: 110 EVLNGDCRLDQALVRDKRW-----SNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQE 164
            V+ G    D A +            ++LL +             + L  V  A+     
Sbjct: 63  PVIQGPEGTDPAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADP 122

Query: 165 GSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLL 213
             P  + +   A      +      +EAV +T   +T L    +   L+
Sbjct: 123 EEPKEVWLVLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLI 171

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} Length = 211

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

 Score = 40.5 bits (94), Expect = 1e-04
 Identities = 32/178 (17%), Positives = 59/178 (33%), Gaps = 9/178 (5%)

Query: 40  NRKPELAGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGL---RNLDL 96
           +++P++  +    V++  G  G GK TT   +     + GF V  + ADV          
Sbjct: 1   DKEPKVIPDKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQ 60

Query: 97  LLGLENRVNYTVVEVLNGDCRLDQALVRDKRWSNFELLCISKP-RSKLPLGFGGKALTWV 155
            LG +  V             + +  V        E++ +    R         +    +
Sbjct: 61  QLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYG-----EEAALL 115

Query: 156 VEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLL 213
            E     +   PD + +   A I        +  N+A  + T  IT +    +  G L
Sbjct: 116 EEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFNQASKIGTIIITKMDGTAKGGGAL 173

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

 Score = 39.7 bits (92), Expect = 2e-04
 Identities = 41/180 (22%), Positives = 62/180 (34%), Gaps = 10/180 (5%)

Query: 40  NRKPELAGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV-GLRNLDLLL 98
           + K  +  E P V+++  G  G GKTT+   +       G SVV   AD      ++ L 
Sbjct: 1   DTKLNVPPEPPFVIMV-VGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLK 59

Query: 99  GLENRVNYTVVEVLNGDCRLDQALVRDKRW-----SNFELLCISKPRSKLPLGFGGKALT 153
               RV  TV+    G    D A V           N +++ I             + L 
Sbjct: 60  IWGERVGATVISHSEGA---DPAAVAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELR 116

Query: 154 WVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLL 213
            V   +K +   +P   L+   A      +       EAV VT   +T L    +    L
Sbjct: 117 KVHRVVKKKIPDAPHETLLVIDATTGQNGLVQAKIFKEAVNVTGIILTKLDGTAKGGITL 176

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} Length = 211

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

 Score = 38.9 bits (90), Expect = 3e-04
 Identities = 29/173 (16%), Positives = 59/173 (34%), Gaps = 4/173 (2%)

Query: 44  ELAGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVV---AIDADVGLRNLDLLLGL 100
            + G+ P V+++  G  GVGKTTT   +     + G SV+                + G 
Sbjct: 3   NVEGKAPFVILM-VGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQ 61

Query: 101 ENRVNYTVVEVLNGDCRLDQALVRDKRWSNFELLCISKPRSKLPLGFGGKALTWVVEALK 160
            N +             +    ++  +  N ++L               + L  +V  +K
Sbjct: 62  RNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMK 121

Query: 161 SRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRVTGLL 213
                +P  +++   A      ++     +EAV +T   +T L    +   + 
Sbjct: 122 KLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGVIF 174

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	340
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	100.0
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	100.0
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	100.0
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	100.0
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	99.83
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	99.83
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	99.81
d1ls1a2	207	GTPase domain of the signal sequence recognition p	99.0
d1okkd2	207	GTPase domain of the signal recognition particle r	98.87
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.82
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.78
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.76
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	98.31
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	98.16
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	98.12
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	98.05
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.65
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	97.58
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	97.3
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.21
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	97.05
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	97.01
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.99
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.9
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.84
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.83
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	96.81
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	96.75
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.58
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	96.53
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	96.52
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	96.43
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.21
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	96.16
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.12
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.1
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.02
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	95.92
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	95.92
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	95.91
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	95.9
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	95.82
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	95.64
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	95.6
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	95.58
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	95.36
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.32
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	95.1
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	94.99
d1g5ta_	157	ATP:corrinoid adenosyltransferase CobA {Salmonella	94.98
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	94.66
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	94.61
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	94.49
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	94.48
d1eg7a_	549	Formyltetrahydrofolate synthetase {Moorella thermo	94.38
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	94.3
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	94.19
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	94.16
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	94.12
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	93.89
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	93.88
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	93.67
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	93.61
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	93.44
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	93.37
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	93.17
d1e8ca3	234	UDP-N-acetylmuramyl tripeptide synthetase MurE {Es	93.11
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	93.1
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	93.06
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	92.94
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	92.91
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	92.76
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	92.74
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	92.52
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	92.47
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	92.22
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	92.21
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	92.07
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	92.02
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	91.75
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	91.64
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	91.6
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	91.58
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	91.49
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	91.48
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	91.42
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	91.14
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	91.12
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	90.61
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	90.6
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	90.51
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	90.4
d2vo1a1	273	CTP synthase PyrG, N-terminal domain {Human (Homo	90.31
d1vcoa2	272	CTP synthase PyrG, N-terminal domain {Thermus ther	90.18
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	90.09
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	90.09
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	89.97
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	89.78
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	89.75
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	89.65
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	89.64
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	89.37
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	89.37
d2g0ta1	338	Hypothetical protein TM0796 {Thermotoga maritima [	89.2
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	88.55
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	88.39
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	88.37
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	88.32
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	88.29
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	88.24
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	87.85
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	87.65
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	87.61
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	87.59
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	87.56
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	87.54
d1s1ma2	266	CTP synthase PyrG, N-terminal domain {Escherichia	87.38
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	87.36
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	87.34
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	87.05
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	86.69
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	86.44
d2gc6a2	296	Folylpolyglutamate synthetase {Lactobacillus casei	86.41
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	86.36
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	85.95
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	85.89
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	85.87
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	85.78
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	85.77
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	85.41
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	85.35
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	85.34
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	85.15
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	85.03
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	84.78
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	84.72
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	84.49
d1gg4a4	214	UDP-murNac-tripeptide D-alanyl-D-alanine-adding en	84.19
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	83.97
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	83.94
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	83.87
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	83.71
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	83.69
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	83.65
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	83.51
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	83.47
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	83.44
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	83.31
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	83.28
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	83.13
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	83.02
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	82.97
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	82.85
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	82.84
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	82.82
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	82.82
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	82.8
d2jfga3	204	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	82.75
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	82.68
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	82.61
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	82.56
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	82.45
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	82.2
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	82.19
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	82.04
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	81.89
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	81.83
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	81.8
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	81.72
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	81.49
d1o5za2	296	Folylpolyglutamate synthetase {Thermotoga maritima	81.25
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	81.11
d1p3da3	215	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	81.09
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	81.03
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	81.02
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	80.98
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	80.93
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	80.91
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	80.89
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	80.79
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	80.74
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	80.74
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	80.61
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	80.39
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	80.33
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	80.31
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	80.05

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=7.5e-38  Score=272.47  Aligned_cols=231  Identities=35%  Similarity=0.526  Sum_probs=198.8

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWS  129 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  129 (340)
                      ||+|+|+|+|||+||||+|+|||..|+++|++|++||+|++.+++..++|.+..+ ....+++.+....++.+....  .
T Consensus         1 ~kvIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~--~   77 (232)
T d1hyqa_           1 VRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADITMANLELILGMEGLP-VTLQNVLAGEARIDEAIYVGP--G   77 (232)
T ss_dssp             CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCCSSSSHHHHTTCCCCC-CCHHHHHTTSSCGGGGCEECG--G
T ss_pred             CEEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHhCCCcCc-chhhhhhccccccccccccCC--c
Confidence            6999999999999999999999999999999999999999989999999987653 667778888877777765443  7


Q ss_pred             ceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHHHHH
Q 047623          130 NFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADRV  209 (340)
Q Consensus       130 ~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~  209 (340)
                      ++++++++...... .......+..+++.+.+    .||+||+|+|++.+......+..+|.+++|+.++..++..+.++
T Consensus        78 ~~~~l~~~~~~~~~-~~~~~~~l~~~l~~l~~----~~D~viiD~~~~~~~~~~~~l~~ad~v~~v~~~~~~~~~~~~~~  152 (232)
T d1hyqa_          78 GVKVVPAGVSLEGL-RKANPEKLEDVLTQIME----STDILLLDAPAGLERSAVIAIAAAQELLLVVNPEISSITDGLKT  152 (232)
T ss_dssp             GCEEEECCSCHHHH-HHHCHHHHHHHHHHHHH----TCSEEEEECCSSSSHHHHHHHHHSSEEEEEECSSHHHHHHHHHH
T ss_pred             cceeEeeecccccc-cccchhhHHHHHHHHhh----ccceeeecccccccchhHHHhhhhheeeeeccccccchhhhhhh
Confidence            88888876653221 12334556667777766    79999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCCCHHHHHHHHHH
Q 047623          210 TGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQAA  289 (340)
Q Consensus       210 ~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~s~~~~~~~~la  289 (340)
                      ++.+++.+.+.+++|+|+++...    .....+++++.++.+++++||+|+.+.++...|+|+.+++|+++++++|.+||
T Consensus       153 ~~~~~~~~~~~~~iv~N~~~~~~----~~~~~~~i~~~~~~~~~~~IP~d~~~~~a~~~g~p~~~~~p~s~~a~~~~~lA  228 (232)
T d1hyqa_         153 KIVAERLGTKVLGVVVNRITTLG----IEMAKNEIEAILEAKVIGLIPEDPEVRRAAAYGKPVVLRSPNSPAARAIVELA  228 (232)
T ss_dssp             HHHHHHHTCEEEEEEEEEECTTT----HHHHHHHHHHHTTSCEEEEEECCHHHHHHHHHTSCHHHHCTTSHHHHHHHHHH
T ss_pred             hhhhhhccccccccccccccccc----ccchhhhHHhhcCCeEEEECCCCHHHHHHHHCCceEEEECCCCHHHHHHHHHH
Confidence            99999888888999999997643    22345688899999999999999999999999999999999999999999999


Q ss_pred             HHH
Q 047623          290 WRL  292 (340)
Q Consensus       290 ~~i  292 (340)
                      ++|
T Consensus       229 ~~i  231 (232)
T d1hyqa_         229 NYI  231 (232)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            987

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=2e-36  Score=264.05  Aligned_cols=235  Identities=34%  Similarity=0.510  Sum_probs=193.3

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccccc
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRW  128 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  128 (340)
                      |+|+|+|+|+||||||||+|+|||.+|+++|++|++||+|++.+++..+++..... ....+.+.+....+....... .
T Consensus         1 m~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D~~~~~l~~~l~~~~~~-~~~~~~l~~~~~~~~~~~~~~-~   78 (237)
T d1g3qa_           1 MGRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDLTMANLSLVLGVDDPD-VTLHDVLAGEANVEDAIYMTQ-F   78 (237)
T ss_dssp             CCEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTSCCHHHHTTCCCCS-SCHHHHHTTSSCGGGGCEECS-S
T ss_pred             CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCCCCCCChhHHhCCCCcc-cchhhhccCCCcHHHhhhccc-c
Confidence            68999999999999999999999999999999999999999889999999876653 556677777776666554432 3


Q ss_pred             CceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHHHHH
Q 047623          129 SNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRDADR  208 (340)
Q Consensus       129 ~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~~~~  208 (340)
                      .+.+.++++..... ........+..+++.+++    .||+||+|++++++....+++..||.+++|+.++..++..+.+
T Consensus        79 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~----~~d~IiiD~~~~~~~~~~~~l~~aD~viiv~~~~~~s~~~~~~  153 (237)
T d1g3qa_          79 DNVYVLPGAVDWEH-VLKADPRKLPEVIKSLKD----KFDFILIDCPAGLQLDAMSAMLSGEEALLVTNPEISCLTDTMK  153 (237)
T ss_dssp             TTEEEECCCCSHHH-HHHCCGGGHHHHHHTTGG----GCSEEEEECCSSSSHHHHHHHTTCSEEEEEECSCHHHHHHHHH
T ss_pred             ccccccccccchhh-hhhhhhHHHHHHHHHHHh----cCCEEEEcccccccccchhhhhhhhcccccccccceecchhhH
Confidence            45555554433211 111334455556555554    7999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCCCHHHHHHHHH
Q 047623          209 VTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPTLAGLAFEQA  288 (340)
Q Consensus       209 ~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~s~~~~~~~~l  288 (340)
                      +++.+++.+.+..++|+|++++...    .......++..+.++.+.||+|..+.++...|+|+.+++|+++++++|++|
T Consensus       154 ~~~~~~~~~~~~~giv~N~~~~~~~----~~~~~~~~~~~~~~~~~~IP~d~~v~~a~~~g~~v~~~~p~s~~a~~~~~l  229 (237)
T d1g3qa_         154 VGIVLKKAGLAILGFVLNRYGRSDR----DIPPEAAEDVMEVPLLAVIPEDPAIREGTLEGIPAVKYKPESKGAKAFVKL  229 (237)
T ss_dssp             HHHHHHHTTCEEEEEEEEEETSCTT----CCCHHHHHHHHCSCEEEEEECCHHHHHHHHHTSCHHHHSTTSHHHHHHHHH
T ss_pred             HHHHHhhhhhhhhhhhhcccccccc----hhhhHHHHhhcCceEEEEeCCCHHHHHHHHcCceEEEECCCCHHHHHHHHH
Confidence            9999999888889999999976541    123445667789999999999999999999999999999999999999999


Q ss_pred             HHHHHh
Q 047623          289 AWRLVE  294 (340)
Q Consensus       289 a~~i~~  294 (340)
                      |++|..
T Consensus       230 a~~i~~  235 (237)
T d1g3qa_         230 AEEIEK  235 (237)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999875

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=100.00  E-value=1.4e-35  Score=266.86  Aligned_cols=262  Identities=18%  Similarity=0.240  Sum_probs=192.3

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccce---ecc
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQAL---VRD  125 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~---~~~  125 (340)
                      .||+|+| ++||||||||+|+|||..||++|+|||+||+|+|.+++..+++....  .++.+.........+..   ...
T Consensus         1 ~Mr~Iai-sgKGGVGKTT~a~NLA~~LA~~G~rVLlID~DpQ~~st~~~l~~~~~--~~~~~~~~~~~~~~d~~~~~v~~   77 (289)
T d2afhe1           1 AMRQCAI-YGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPKADSTRLILHSKAQ--NTIMEMAAEAGTVEDLELEDVLK   77 (289)
T ss_dssp             CCEEEEE-EECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSSSCSSHHHHCCSSC--CBHHHHHHTTSSGGGCCHHHHCE
T ss_pred             CccEEEE-ECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCCCCCcchhhcCCCCC--CchhhhhhccCcccccccceeEe
Confidence            3788998 46999999999999999999999999999999996666666766554  45556555443333211   111


Q ss_pred             cccCceeEeecCCCCCCCCCCcchh-hHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHH---HhcCCeEEEEeCCChh
Q 047623          126 KRWSNFELLCISKPRSKLPLGFGGK-ALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITA---ITPANEAVLVTTPDIT  201 (340)
Q Consensus       126 ~~~~~l~~l~~~~~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~---l~~ad~viiv~~~~~~  201 (340)
                      +...+++.++............... ....+.+.+. .+.++||||+|||||+........   ...+|.+++|+.++..
T Consensus        78 ~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~~~~~  156 (289)
T d2afhe1          78 AGYGGVKCVESGGPEPGVGCAGRGVITAINFLEEEG-AYEDDLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMM  156 (289)
T ss_dssp             ECGGGCEEEECCCCCTTTCCHHHHHHHHHHHHHHTT-CSSTTCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSHH
T ss_pred             cccccceeeccCCchhhhhhhhcchHHHHHHHHHHH-HhhccCCeEeeccCCccCHHHHHHHHHhhccceeecccchhHH
Confidence            2346778887765543332211111 1112222222 246789999999999774433322   3479999999999999


Q ss_pred             hHHHHHHHHHHHHh----cCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCC
Q 047623          202 SLRDADRVTGLLEC----DGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKP  277 (340)
Q Consensus       202 s~~~~~~~~~~l~~----~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~  277 (340)
                      ++..+.++++.+..    .+.+..++|+|+.+...    .....+++++.+|.++++.||++..+.++...|+|+.+++|
T Consensus       157 s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~~----~~~~~~~~~~~~g~~vl~~IP~~~~v~eA~~~g~pv~~~~p  232 (289)
T d2afhe1         157 AMYAANNISKGIVKYANSGSVRLGGLICNSRNTDR----EDELIIALANKLGTQMIHFVPRDNVVQRAEIRRMTVIEYDP  232 (289)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTT----HHHHHHHHHHHHTSCEEEEECCCHHHHHHHHTTSCHHHHCT
T ss_pred             HHHHHHHHHHHHHhhhhcccccccceeehhhcchh----hHHHHHHHHHHcCCeEEEEEeccHHHHHHHHcCCceEEECc
Confidence            99999888887754    23456789999986543    22336678889999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHhccccchhhhccCccccchhhhhcccee
Q 047623          278 PTLAGLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFSFFGLGVL  321 (340)
Q Consensus       278 ~s~~~~~~~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (340)
                      +|+++++|++||++|+++....   .+.+.+.++++.+|++|-+
T Consensus       233 ~S~~a~~y~~LA~ei~e~~~~~---~p~p~~~~~~~~~~~~~~~  273 (289)
T d2afhe1         233 KAKQADEYRALARKVVDNKLLV---IPNPITMDELEELLMEFGI  273 (289)
T ss_dssp             TSHHHHHHHHHHHHHHHCCCCB---CCCCCCHHHHHHHHHHTTS
T ss_pred             CCHHHHHHHHHHHHHHcCCCCC---CCCCCCHHHHHHHHHHhCC
Confidence            9999999999999999987654   2344667889998888644

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=100.00  E-value=2.5e-34  Score=255.95  Aligned_cols=256  Identities=18%  Similarity=0.243  Sum_probs=189.3

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcC---CCccccceeccc
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNG---DCRLDQALVRDK  126 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~---~~~~~~~~~~~~  126 (340)
                      ||+|+|+| ||||||||+|+|||..||++|+||++||+|+|.+++..+++....  .++.+.+..   ....+..+.  .
T Consensus         1 mr~Iai~g-KGGvGKTT~a~nLA~~LA~~G~rVllID~D~q~~~t~~ll~~~~~--~~~~~~~~~~~~~~~~~~i~~--~   75 (269)
T d1cp2a_           1 MRQVAIYG-KGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADSTRLLLGGLAQ--KSVLDTLREEGEDVELDSILK--E   75 (269)
T ss_dssp             CEEEEEEE-CTTSSHHHHHHHHHHHHHTTTCCEEEEEECTTSCSSHHHHTSCCC--CCHHHHHHHHGGGCCHHHHCE--E
T ss_pred             CCEEEEEC-CCcCCHHHHHHHHHHHHHhCCCcEEEEecCCCCCchhhhhCCCcc--cchhhhhhhcccccccceEEE--e
Confidence            68999986 999999999999999999999999999999997777777776654  344454432   222222222  2


Q ss_pred             ccCceeEeecCCCCCCCCCCcc-hhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHH---HHHHHhcCCeEEEEeCCChhh
Q 047623          127 RWSNFELLCISKPRSKLPLGFG-GKALTWVVEALKSRQEGSPDFILIDCPAGIDAG---FITAITPANEAVLVTTPDITS  202 (340)
Q Consensus       127 ~~~~l~~l~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~---~~~~l~~ad~viiv~~~~~~s  202 (340)
                      ...+++.++............. ......+.+.+ ..+.+.|||||+|+|++....   .......||.+++|+.++..+
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~l~~~~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~~~~s  154 (269)
T d1cp2a_          76 GYGGIRCVESGGPEPGVGCAGRGIITSINMLEQL-GAYTDDLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMA  154 (269)
T ss_dssp             CGGGCEEEECCCCCTTSSCHHHHHHHHHHHHHHT-TCCCTTCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHHH
T ss_pred             cCCceEEeccCcchhhhhhcccchHHHHHHHHHH-HHhhccCCEEEeccCCccchhHHHHHHHhhccCceeeccchhhhH
Confidence            3356777776555433322111 11122333333 235678999999999976432   233346699999999999999


Q ss_pred             HHHHHHHHHHHHhc----CCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCC
Q 047623          203 LRDADRVTGLLECD----GIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPP  278 (340)
Q Consensus       203 ~~~~~~~~~~l~~~----~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~  278 (340)
                      +..+.++.+.++..    +.+..++|+|+.+...    .....+++.+.++.++++.||+++.+.++...|+|+.+++|+
T Consensus       155 l~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~----~~~~~~~~~~~~~~~~~~~IP~d~~i~~a~~~g~~v~~~~p~  230 (269)
T d1cp2a_         155 LYAANNISKGIQKYAKSGGVRLGGIICNSRKVAN----EYELLDAFAKELGSQLIHFVPRSPMVTKAEINKQTVIEYDPT  230 (269)
T ss_dssp             HHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSC----CHHHHHHHHHHHTCCEEEEECCCHHHHHHHHTTSCHHHHCTT
T ss_pred             HHHHHHHHHHHHhhccccceeccceEEeeecCCC----ccchhhhhHhhcCCeEEEEEecCHHHHHHHHCCCCeEEECcC
Confidence            99999988888652    3345779999987654    223366788889999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHhccccchhhhccCccccchhhhhcc
Q 047623          279 TLAGLAFEQAAWRLVEQDSMKAVMVEEEPKRRGFFSFFGL  318 (340)
Q Consensus       279 s~~~~~~~~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (340)
                      |+++++|++||++|++....-   .+.+.+.+++|++|++
T Consensus       231 s~~a~~~~~La~~i~~~~~~~---~p~p~~~~~~~~~~~~  267 (269)
T d1cp2a_         231 CEQAEEYRELARKVDANELFV---IPKPMTQERLEEILMQ  267 (269)
T ss_dssp             SHHHHHHHHHHHHHHHCCCCB---CCCCCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCCCC---CCCCCCHHHHHHHHHH
Confidence            999999999999999986543   2344556788888865

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=1.4e-21  Score=174.71  Aligned_cols=182  Identities=19%  Similarity=0.176  Sum_probs=108.2

Q ss_pred             CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccH----HHhhcCCCcc----
Q 047623           47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTV----VEVLNGDCRL----  118 (340)
Q Consensus        47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l----~~~l~~~~~~----  118 (340)
                      ..++++| ++|+||||||||+|+|||..||++|+||++||+|++ ++++..||.+......-    ..+.....+.    
T Consensus         5 ~~~p~~i-~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~Dp~-~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (296)
T d1ihua1           5 QNIPPYL-FFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPA-SNVGQVFSQTIGNTIQAIASVPGLSALEIDPQAAA   82 (296)
T ss_dssp             SSCCSEE-EEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT-CCHHHHTTSCCCSSCEECTTSTTEEEEECCHHHHH
T ss_pred             CCCCeEE-EEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCCCC-CCHHHHhCCCCcccccccccccccchhccChhhHH
Confidence            4566666 457999999999999999999999999999999998 88999998753211100    0000000000    


Q ss_pred             ccceecccccCceeEeecCCCCCCCC--CCcc----hhhHHHHHHHHHHh-ccCCCCEEEEcCCCCCCHHHHHH------
Q 047623          119 DQALVRDKRWSNFELLCISKPRSKLP--LGFG----GKALTWVVEALKSR-QEGSPDFILIDCPAGIDAGFITA------  185 (340)
Q Consensus       119 ~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~----~~~~~~l~~~l~~~-~~~~~D~VIiD~~~~~~~~~~~~------  185 (340)
                      ++....  ...++...+.........  ....    ...+..+...+... ...+||+||+||||+........      
T Consensus        83 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yD~iviD~pp~~~~l~~~~l~~~~~  160 (296)
T d1ihua1          83 QQYRAR--IVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLLTDASLLTRFDHIIFDTAPTGHTIRLLQLPGAWS  160 (296)
T ss_dssp             HHHHHH--HHGGGTTTSCHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHCTTHHHHCSEEEESSCCCHHHHHHHHCGGGGT
T ss_pred             HHHHhh--ccchhhhcccccchhhhHHhhhhhhhhhHHHHHHHHHHHHHhhhcccceEEEeccCCCchHHHHHhHHHHHH
Confidence            000000  001111110000000000  0000    01112222222111 12469999999999754332211      


Q ss_pred             --------------------------------Hh--cCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          186 --------------------------------IT--PANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       186 --------------------------------l~--~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                                                      +.  ..+.+++|+.|+..++..+.+.++.++..+.+..++|+||+.+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~lVt~pe~~~~~~~~r~~~~l~~~gi~~~~vVvN~v~p~  240 (296)
T d1ihua1         161 SFIDSNPEGASCLGPMAGLEKQREQYAYAVEALSDPKRTRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLPK  240 (296)
T ss_dssp             CCC------CCCCGGGGGCCSCHHHHHHHHHHHHCTTTEEEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEECCG
T ss_pred             HHHhhccchhhhcccccchhHHHHHHHHHHhhccCcccceeeEecCcchhHHHHHHHHHHHHHhcCCCceEEEEcCCcCc
Confidence                                            11  12458999999999999999999999999999999999998765


Q ss_pred             c
Q 047623          232 M  232 (340)
Q Consensus       232 ~  232 (340)
                      .
T Consensus       241 ~  241 (296)
T d1ihua1         241 T  241 (296)
T ss_dssp             G
T ss_pred             c
Confidence            4

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=2.3e-21  Score=172.19  Aligned_cols=181  Identities=21%  Similarity=0.210  Sum_probs=96.9

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccc
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKR  127 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  127 (340)
                      +..++| |+++||||||||+|+|||..||++|+||++||+|++ ++++.+||........  ..........+.......
T Consensus        18 ~~~~ii-i~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp~-~~l~~~lg~~~~~~~~--~~~~~~~~~~~~~~~~~~   93 (279)
T d1ihua2          18 NEHGLI-MLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPA-AHLSMTLNGSLNNLQV--SRIDPHEETERYRQHVLE   93 (279)
T ss_dssp             TSCEEE-EEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC------------CCEEE--EECCHHHHHHHHHHHHHH
T ss_pred             CCCEEE-EEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCC-CChHHHhCCccccccc--cccccchhhHHHHHhhhh
Confidence            334455 666799999999999999999999999999999999 8888888865432100  000000000000000000


Q ss_pred             cCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHh-ccCCCCEEEEcCCCCCCHHHH-----------------------
Q 047623          128 WSNFELLCISKPRSKLPLGFGGKALTWVVEALKSR-QEGSPDFILIDCPAGIDAGFI-----------------------  183 (340)
Q Consensus       128 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~D~VIiD~~~~~~~~~~-----------------------  183 (340)
                      ..+....+.......................+... ....||++++|++++......                       
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  173 (279)
T d1ihua2          94 TKGKELDEAGKRLLEEDLRSPCTEEIAVFQAFSRVIREAGKRFVVMDTAPTGHTLLLLDATGAYHREIAKKMGEKGHFTT  173 (279)
T ss_dssp             HHHTTCCHHHHHHHHHHTTSHHHHHHHHHHHHTTTGGGGGTSEEEESCCCCHHHHHHHHHC------------------C
T ss_pred             cccccccccccccchhhhcccchHHHHHHHHHHHHHhhcccccccccCCCchhHHHHHHHHHHHHhhHHHHhcchhhHHH
Confidence            00000000000000000001111111112222221 234699999999996321110                       


Q ss_pred             ----HHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCc
Q 047623          184 ----TAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDM  232 (340)
Q Consensus       184 ----~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~  232 (340)
                          .....+|.+++|+.|+..++..+.++++.+...+.+..++|+|++....
T Consensus       174 ~~~~~~~~~~~~~vlV~~p~~~~~~~~~r~~~~l~~~~~~~~~iV~N~~~~~~  226 (279)
T d1ihua2         174 PMMLLQDPERTKVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSLSIA  226 (279)
T ss_dssp             CHHHHHCTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTCCCCEEEEEEESTTS
T ss_pred             HhhhccccccccceEeccccHhHHHHHHHHHHHHHhcCCCccEEEEcCCcccc
Confidence                0011346799999999999999999999999999999999999986544

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=2.4e-20  Score=159.35  Aligned_cols=210  Identities=15%  Similarity=0.097  Sum_probs=131.7

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccccC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKRWS  129 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  129 (340)
                      .|.+.|+|+..||||||+++|||.+|+++|+||+++|.|++ ++....++........+..............      +
T Consensus         1 ~~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~   73 (224)
T d1byia_           1 SKRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVAS-GSEKTPEGLRNSDALALQRNSSLQLDYATVN------P   73 (224)
T ss_dssp             CEEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECSEEE-SCBCCTTSCBCHHHHHHHHTCSSCCCHHHHC------S
T ss_pred             CceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEECcccc-CCCCCCCCcchhHHHHHHHhhccCccccccc------c
Confidence            37888887777999999999999999999999999999998 6666666554321111111111111100000      0


Q ss_pred             ceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHH------H-HHHHhcCCeEEEEeCCChhh
Q 047623          130 NFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAG------F-ITAITPANEAVLVTTPDITS  202 (340)
Q Consensus       130 ~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~------~-~~~l~~ad~viiv~~~~~~s  202 (340)
                      .....+. .................+.+.+.. ....||++++|+++.....      . .......+.+++|+.+...+
T Consensus        74 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~V~~~~~~~  151 (224)
T d1byia_          74 YTFAEPT-SPHIISAQEGRPIESLVMSAGLRA-LEQQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGC  151 (224)
T ss_dssp             EEESSCS-CHHHHHHHHTCCCCHHHHHHHHHH-HHTTCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTH
T ss_pred             cccccch-hhhhhhhhhhhhhhHHHHHHHHhh-hhhccceEeecccccccccccccchhhcccccccceeeEEEeeccch
Confidence            0000000 000000000011122333333333 3347999999999855311      1 11223456688888888899


Q ss_pred             HHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCceeEEecCChHHHHHHhcCC
Q 047623          203 LRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALLGVIPEDSEVIRSTNRGY  270 (340)
Q Consensus       203 ~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~  270 (340)
                      ...+....+.+...+....++|+|+++.......  ...+.+++.+|.++++.||++++..+....|+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~gvv~N~~~~~~~~~~--~~~~~l~~~~gi~vlG~IP~~~~~~e~~~~~~  217 (224)
T d1byia_         152 INHAMLTAQVIQHAGLTLAGWVANDVTPPGKRHA--EYMTTLTRMIPAPLLGEIPWLAENPENAATGK  217 (224)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEEECCSSCCTTHH--HHHHHHHHHSSSCEEEEECCCTTCTTCCCCGG
T ss_pred             hHHHHHHHHHHhccCCccEEEEEeCcCCCchHHH--HHHHHHHHHhCCCEEEECCCCCCCcccccccc
Confidence            9999999999999999999999999987643333  34778999999999999999887655444443

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=99.00  E-value=1.7e-08  Score=83.87  Aligned_cols=164  Identities=19%  Similarity=0.206  Sum_probs=93.5

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccc
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKR  127 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  127 (340)
                      +..++|.+. +..||||||+++-||++++++|++|++|.+|.........+.       ...+.+               
T Consensus         8 ~~~~vi~lv-Gp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~-------~~a~~l---------------   64 (207)
T d1ls1a2           8 KDRNLWFLV-GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLR-------LLGEKV---------------   64 (207)
T ss_dssp             CSSEEEEEE-CCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHH-------HHHHHH---------------
T ss_pred             CCCcEEEEE-CCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccchHHHHHH-------HHHHhc---------------
Confidence            345677666 888999999999999999999999999999987333322210       111111               


Q ss_pred             cCceeEeecCCCCCCCCCCcchhhHH-HHHHHHHHhccCCCCEEEEcCCCCC--CHHHHH----H--HhcCCeEEEEeCC
Q 047623          128 WSNFELLCISKPRSKLPLGFGGKALT-WVVEALKSRQEGSPDFILIDCPAGI--DAGFIT----A--ITPANEAVLVTTP  198 (340)
Q Consensus       128 ~~~l~~l~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~D~VIiD~~~~~--~~~~~~----~--l~~ad~viiv~~~  198 (340)
                        ++.+......       .+..... ......+   ..++|+|+|||++..  +.....    .  ....+.+++|..+
T Consensus        65 --~v~~~~~~~~-------~~~~~~~~~~~~~~~---~~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a  132 (207)
T d1ls1a2          65 --GVPVLEVMDG-------ESPESIRRRVEEKAR---LEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDA  132 (207)
T ss_dssp             --TCCEEECCTT-------CCHHHHHHHHHHHHH---HHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEG
T ss_pred             --CCcccccccc-------chhhHHHHHHHHHHh---hccCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEecc
Confidence              1111111100       0111111 1111111   126999999999943  332222    1  2346777777766


Q ss_pred             ChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623          199 DITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL  253 (340)
Q Consensus       199 ~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~  253 (340)
                      ... .+.......+.+..+  .-++|+++.+...    ..-.+..+...++.|+.
T Consensus       133 ~~~-~~~~~~~~~f~~~~~--~~~~I~TKlDe~~----~~G~~l~~~~~~~~Pi~  180 (207)
T d1ls1a2         133 MTG-QEALSVARAFDEKVG--VTGLVLTKLDGDA----RGGAALSARHVTGKPIY  180 (207)
T ss_dssp             GGT-HHHHHHHHHHHHHTC--CCEEEEECGGGCS----SCHHHHHHHHHHCCCEE
T ss_pred             ccc-hhHHHHHHHHHhhCC--CCeeEEeecCccc----cchHHHHHHHHHCCCEE
Confidence            333 233333333333333  4579999999765    23345567788888874

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.87  E-value=1.1e-07  Score=78.65  Aligned_cols=164  Identities=20%  Similarity=0.205  Sum_probs=93.2

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccc
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKR  127 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  127 (340)
                      +.+++|++. +-.|+||||+++-||.++.++|++|++|-+|.........+       ..+.+.                
T Consensus         4 ~~~~vi~lv-GptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL-------~~~a~~----------------   59 (207)
T d1okkd2           4 PKGRVVLVV-GVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQL-------SEWGKR----------------   59 (207)
T ss_dssp             CSSSEEEEE-CSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTHHHHH-------HHHHHH----------------
T ss_pred             CCCEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccccccchhhH-------hhcccc----------------
Confidence            345788888 66789999999999999999999999999998644432221       111111                


Q ss_pred             cCceeEeecCCCCCCCCCCcch-hhHHHHHHHHHHhccCCCCEEEEcCCCCC--CHHHH-------HHHh-----cCCeE
Q 047623          128 WSNFELLCISKPRSKLPLGFGG-KALTWVVEALKSRQEGSPDFILIDCPAGI--DAGFI-------TAIT-----PANEA  192 (340)
Q Consensus       128 ~~~l~~l~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~D~VIiD~~~~~--~~~~~-------~~l~-----~ad~v  192 (340)
                       -++.++.....       .+. ..........+   .++||+|+|||++..  +....       ..+.     ..+.+
T Consensus        60 -l~i~~~~~~~~-------~d~~~~~~~~~~~~~---~~~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~  128 (207)
T d1okkd2          60 -LSIPVIQGPEG-------TDPAALAYDAVQAMK---ARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEV  128 (207)
T ss_dssp             -HTCCEECCCTT-------CCHHHHHHHHHHHHH---HHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEE
T ss_pred             -cCceEEeccCC-------ccHHHHHHHHHHHHH---HCCCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceE
Confidence             11112111100       001 11111122222   126999999999954  22211       1111     23566


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623          193 VLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL  253 (340)
Q Consensus       193 iiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~  253 (340)
                      ++|..+... .+.+..+....+..+.  -++|+++.+....    .-.+..+....+.|+.
T Consensus       129 ~LVl~a~~~-~~~~~~~~~~~~~~~~--~~lI~TKlDet~~----~G~~l~~~~~~~~Pi~  182 (207)
T d1okkd2         129 WLVLDAVTG-QNGLEQAKKFHEAVGL--TGVIVTKLDGTAK----GGVLIPIVRTLKVPIK  182 (207)
T ss_dssp             EEEEETTBC-THHHHHHHHHHHHHCC--SEEEEECTTSSCC----CTTHHHHHHHHCCCEE
T ss_pred             EEEeecccC-chHHHHHHHhhhccCC--ceEEEeccCCCCC----ccHHHHHHHHHCCCEE
Confidence            777655332 2334444444444343  4789999998753    3345567778888876

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.82  E-value=6.2e-08  Score=80.32  Aligned_cols=166  Identities=16%  Similarity=0.228  Sum_probs=94.1

Q ss_pred             CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccc
Q 047623           47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDK  126 (340)
Q Consensus        47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  126 (340)
                      ++...+|++. +-.|+||||+++-||+++.++|++|++|-+|.........+       ..+.+.               
T Consensus         6 ~~~p~vi~lv-GptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~gA~eQL-------~~~a~~---------------   62 (211)
T d2qy9a2           6 GKAPFVILMV-GVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQL-------QVWGQR---------------   62 (211)
T ss_dssp             SCTTEEEEEE-CCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHHHHHHH-------HHHHHH---------------
T ss_pred             CCCCEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccccchhhh-------hhhhhh---------------
Confidence            4556788887 56689999999999999998899999999998633221111       011111               


Q ss_pred             ccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCC--HHHH-------HHHh-----cCCeE
Q 047623          127 RWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGID--AGFI-------TAIT-----PANEA  192 (340)
Q Consensus       127 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~--~~~~-------~~l~-----~ad~v  192 (340)
                        -++.+.......      -....+....+..+   .++||+|||||++...  ....       ..+.     ..+.+
T Consensus        63 --l~v~~~~~~~~~------d~~~~l~~~~~~a~---~~~~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~  131 (211)
T d2qy9a2          63 --NNIPVIAQHTGA------DSASVIFDAIQAAK---ARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEV  131 (211)
T ss_dssp             --TTCCEECCSTTC------CHHHHHHHHHHHHH---HTTCSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEE
T ss_pred             --cCCcccccccCC------CHHHHHHHHHHHHH---HcCCCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCccee
Confidence              122222111110      00111222222222   2479999999999532  1111       1121     13567


Q ss_pred             EEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623          193 VLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL  253 (340)
Q Consensus       193 iiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~  253 (340)
                      ++|..+. ...+.+.+.....+..+  .-++|+++.+....    .-.+..+....+.|+.
T Consensus       132 ~LVl~a~-~~~~~~~~~~~~~~~~~--~~~lIlTKlDe~~~----~G~~l~~~~~~~~Pi~  185 (211)
T d2qy9a2         132 MLTIDAS-TGQNAVSQAKLFHEAVG--LTGITLTKLDGTAK----GGVIFSVADQFGIPIR  185 (211)
T ss_dssp             EEEEEGG-GTHHHHHHHHHHHHHSC--CCEEEEECCTTCTT----TTHHHHHHHHHCCCEE
T ss_pred             eeehhcc-cCcchHHHHhhhhhccC--CceEEEeecCCCCC----ccHHHHHHHHHCCCEE
Confidence            7776543 23344444555454433  46799999998763    2335567777888866

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.78  E-value=2.5e-07  Score=76.82  Aligned_cols=165  Identities=19%  Similarity=0.187  Sum_probs=94.9

Q ss_pred             CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceeccc
Q 047623           47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDK  126 (340)
Q Consensus        47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  126 (340)
                      ...+.+|+++ +--|+||||+++-||+++.++|++|++|-+|.........+       ....+.               
T Consensus         8 ~~~p~vi~lv-GptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~gA~eQL-------~~~a~~---------------   64 (213)
T d1vmaa2           8 PEPPFVIMVV-GVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQL-------KIWGER---------------   64 (213)
T ss_dssp             SSSCEEEEEE-CCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHH-------HHHHHH---------------
T ss_pred             CCCCEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCceEEEeecccccchhHHH-------HHHhhh---------------
Confidence            3556778877 56689999999999999999999999999997632221111       000011               


Q ss_pred             ccCceeEeecCCCCCCCCCCcchhhHHHHHHHH-HHhccCCCCEEEEcCCCCCC--HHHHH---HH-hc--------CCe
Q 047623          127 RWSNFELLCISKPRSKLPLGFGGKALTWVVEAL-KSRQEGSPDFILIDCPAGID--AGFIT---AI-TP--------ANE  191 (340)
Q Consensus       127 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~~D~VIiD~~~~~~--~~~~~---~l-~~--------ad~  191 (340)
                        -++.+.....          ..+...+.... .....++||+|||||++...  .....   .+ ..        .+.
T Consensus        65 --l~i~~~~~~~----------~~d~~~~~~~~~~~~~~~~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~  132 (213)
T d1vmaa2          65 --VGATVISHSE----------GADPAAVAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHE  132 (213)
T ss_dssp             --HTCEEECCST----------TCCHHHHHHHHHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSE
T ss_pred             --cCccccccCC----------CCcHHHHHHHHHHHHHHcCCCEEEEeccccccchHHHHHHHHHHHhhhhhccccccce
Confidence              1122221111          11111111111 11123479999999999442  11111   11 11        356


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623          192 AVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL  253 (340)
Q Consensus       192 viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~  253 (340)
                      +++|... ....+.+.+..+..+..+  .-++|+++.+....    .-.+..+....+.|+.
T Consensus       133 ~~LVl~a-~~~~~~~~~~~~~~~~~~--~~~lI~TKlDe~~~----~G~~l~~~~~~~~Pi~  187 (213)
T d1vmaa2         133 TLLVIDA-TTGQNGLVQAKIFKEAVN--VTGIILTKLDGTAK----GGITLAIARELGIPIK  187 (213)
T ss_dssp             EEEEEEG-GGHHHHHHHHHHHHHHSC--CCEEEEECGGGCSC----TTHHHHHHHHHCCCEE
T ss_pred             eEEeecc-ccCcchhhhhhhhccccC--CceEEEecccCCCc----ccHHHHHHHHHCCCEE
Confidence            7777765 334555555656555544  46799999998652    2335567777888877

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.76  E-value=2.1e-07  Score=77.17  Aligned_cols=166  Identities=16%  Similarity=0.176  Sum_probs=89.6

Q ss_pred             CCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecc
Q 047623           46 AGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRD  125 (340)
Q Consensus        46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  125 (340)
                      +.+.+.+|++. +-.|+||||+++-||+++.++|++|.+|-+|.........+       ....+.              
T Consensus         8 ~~k~p~vi~lv-GptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~ga~eQL-------~~~a~~--------------   65 (211)
T d1j8yf2           8 PDKIPYVIMLV-GVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQL-------QQLGQQ--------------   65 (211)
T ss_dssp             CSSSSEEEEEE-CSCCC----HHHHHHHHHHHTTCCEEEEECCCSSHHHHHHH-------HHHHHH--------------
T ss_pred             CCCCCEEEEEE-CCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccccchhHHH-------HHhccc--------------
Confidence            34556788877 66789999999999999999999999999997632221111       011111              


Q ss_pred             cccCceeEeecCCCCCCCCCCcchhhHHH-HHHHHHHhccCCCCEEEEcCCCCC--C-HH--H---HHHH--hcCCeEEE
Q 047623          126 KRWSNFELLCISKPRSKLPLGFGGKALTW-VVEALKSRQEGSPDFILIDCPAGI--D-AG--F---ITAI--TPANEAVL  194 (340)
Q Consensus       126 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-l~~~l~~~~~~~~D~VIiD~~~~~--~-~~--~---~~~l--~~ad~vii  194 (340)
                         -++.+.....          ..+... +.+.+......++|+|+|||++..  + ..  .   ....  ...+.+++
T Consensus        66 ---l~v~~~~~~~----------~~~~~~~~~~a~~~~~~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~L  132 (211)
T d1j8yf2          66 ---IGVPVYGEPG----------EKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTL  132 (211)
T ss_dssp             ---HTCCEECCTT----------CCCHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEE
T ss_pred             ---cCcceeeccc----------chhhhHHHHHHHHHhhccCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEE
Confidence               1111211111          111111 111222112247999999999842  2 11  1   1111  23567777


Q ss_pred             EeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHHHHHHhCCcee
Q 047623          195 VTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLDIQEMLGLALL  253 (340)
Q Consensus       195 v~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~i~~~~g~~v~  253 (340)
                      |..+... .+............+.  -++|+++++....    .-.+..+....+.|+.
T Consensus       133 Vl~a~~~-~~~~~~~~~~~~~~~~--~~lI~TKlDet~~----~G~~l~~~~~~~lPi~  184 (211)
T d1j8yf2         133 VIDASIG-QKAYDLASKFNQASKI--GTIIITKMDGTAK----GGGALSAVAATGATIK  184 (211)
T ss_dssp             EEEGGGG-GGHHHHHHHHHHHCTT--EEEEEECTTSCSC----HHHHHHHHHTTTCCEE
T ss_pred             EEecccC-cchHHHHhhhhcccCc--ceEEEecccCCCc----ccHHHHHHHHHCcCEE
Confidence            7755432 2333444444444333  5799999998762    3334566677788866

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=98.31  E-value=1.8e-06  Score=76.46  Aligned_cols=155  Identities=14%  Similarity=0.081  Sum_probs=85.9

Q ss_pred             CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCch-hccCCcCCCcccHHHhhcCCCccccceecc
Q 047623           47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLD-LLLGLENRVNYTVVEVLNGDCRLDQALVRD  125 (340)
Q Consensus        47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  125 (340)
                      .+...+|+|+ +-+|+||||+.-.|+.++..+|++|.++-.||.++-.. .++|              +..++...    
T Consensus        51 ~~~~~~Igit-G~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailg--------------dr~rm~~~----  111 (327)
T d2p67a1          51 CGNTLRLGVT-GTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILG--------------DKTRMNDL----  111 (327)
T ss_dssp             CSCSEEEEEE-ECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-----------------------------CTT----
T ss_pred             cCCceEEEee-CCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeecccccc--------------chhHHHHh----
Confidence            4667899999 67899999999999999999999999999999844322 1121              11111111    


Q ss_pred             cccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHhcCCeEEEEeCCChhhHHH
Q 047623          126 KRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAITPANEAVLVTTPDITSLRD  205 (340)
Q Consensus       126 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~~ad~viiv~~~~~~s~~~  205 (340)
                      ...++.++-+.+.......   -.......+..+...   .||+|||++-+.... ...+...+|.+++++.|+..+-  
T Consensus       112 ~~~~~~~ir~~~~~g~lgg---~~~~~~~~~~~~~~~---g~d~iliEtvG~gq~-e~~i~~~aD~~l~v~~P~~Gd~--  182 (327)
T d2p67a1         112 ARAEAAFIRPVPSSGHLGG---ASQRARELMLLCEAA---GYDVVIVETVGVGQS-ETEVARMVDCFISLQIAGGGDD--  182 (327)
T ss_dssp             TTCTTEEEEEECC-----C---HHHHHHHHHHHHHHT---TCSEEEEEEECCTTH-HHHHHTTCSEEEEEECC-------
T ss_pred             ccccccccccccccccccc---chhhhhHHHHHHHhc---CCCeEEEeecccccc-chhhhhccceEEEEecCCCchh--
Confidence            0113444433332211111   112233445555443   799999999885433 3456778999999999865532  


Q ss_pred             HHHHHHHHHhcCCCceEEEEecccCCc
Q 047623          206 ADRVTGLLECDGIRDIKMVVNRVRTDM  232 (340)
Q Consensus       206 ~~~~~~~l~~~~~~~~~vviN~~~~~~  232 (340)
                      .+.+...+-+.  . =.+|+|+.+...
T Consensus       183 iq~~k~gi~e~--a-Di~VvNKaD~~~  206 (327)
T d2p67a1         183 LQGIKKGLMEV--A-DLIVINKDDGDN  206 (327)
T ss_dssp             -CCCCHHHHHH--C-SEEEECCCCTTC
T ss_pred             hhhhchhhhcc--c-cEEEEEeecccc
Confidence            11111111111  1 148899998653

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.16  E-value=2.8e-06  Score=67.43  Aligned_cols=40  Identities=20%  Similarity=0.109  Sum_probs=36.1

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      ||+|+|+| ..|+||||++..|+..|.++|++|.+|..|..
T Consensus         1 Mkii~I~G-~~gSGKTTli~~l~~~L~~~g~~v~vik~d~~   40 (165)
T d1xjca_           1 MNVWQVVG-YKHSGKTTLMEKWVAAAVREGWRVGTVKHHGH   40 (165)
T ss_dssp             CCEEEEEC-CTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred             CcEEEEEe-CCCCCHHHHHHHHHHHHHhCCCeEEEEEeccC
Confidence            68999996 55999999999999999999999999999876

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.12  E-value=1e-05  Score=69.54  Aligned_cols=89  Identities=15%  Similarity=0.151  Sum_probs=71.9

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHH
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLD  243 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~  243 (340)
                      ++.+-|+|||+..  ...+..++..+|..|+|+.+...--.++.++.+.++..+++. .+++|+.++...  .......+
T Consensus        70 ~~~~n~iDtPG~~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a~~~~lP~-i~fINKmDr~~a--d~~~~l~e  146 (276)
T d2bv3a2          70 DHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPR-IAFANKMDKTGA--DLWLVIRT  146 (276)
T ss_dssp             TEEEEEECCCSSSSCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHHHHTTTCCE-EEEEECTTSTTC--CHHHHHHH
T ss_pred             CeEEEEecCCchhhhHHHHHHHHHhhhheEEeccccCCcchhHHHHHHHHHHcCCCE-EEEEeccccccc--ccchhHHH
Confidence            5788999999965  455688899999999999998888888999999999888874 588999998642  22345778


Q ss_pred             HHHHhCCcee-EEec
Q 047623          244 IQEMLGLALL-GVIP  257 (340)
Q Consensus       244 i~~~~g~~v~-~~Ip  257 (340)
                      +++.++.+++ ..+|
T Consensus       147 i~~~l~~~~vp~~~P  161 (276)
T d2bv3a2         147 MQERLGARPVVMQLP  161 (276)
T ss_dssp             HHHTTCCCEEECEEE
T ss_pred             HHHHhCCCeEEEEec
Confidence            9999998776 4566

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.05  E-value=7.9e-06  Score=72.04  Aligned_cols=149  Identities=17%  Similarity=0.073  Sum_probs=87.3

Q ss_pred             CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCch-hccCCcCCCcccHHHhhcCCCccccceecc
Q 047623           47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLD-LLLGLENRVNYTVVEVLNGDCRLDQALVRD  125 (340)
Q Consensus        47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  125 (340)
                      .+...+|+|+ +-+|+||||+.-.|+..+...|++|.++-.||.++-.. .++|-.              .++.+.    
T Consensus        48 ~~~~~~igit-G~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr--------------~rm~~~----  108 (323)
T d2qm8a1          48 TGRAIRVGIT-GVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDK--------------TRMARL----  108 (323)
T ss_dssp             CCCSEEEEEE-CCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCG--------------GGSTTG----
T ss_pred             cCCceEEeee-CCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccch--------------hhHHHH----
Confidence            4567899999 78899999999999999999999999999999833221 222211              111111    


Q ss_pred             cccCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCC-CHHHHHHHhcCCeEEEEeCCChhhHH
Q 047623          126 KRWSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGI-DAGFITAITPANEAVLVTTPDITSLR  204 (340)
Q Consensus       126 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~-~~~~~~~l~~ad~viiv~~~~~~s~~  204 (340)
                      ...++.++-+........   --.......+..+..   ..||+|||.|-+.. +.  ......+|..+++..|...+--
T Consensus       109 ~~~~~~~ir~~~~~~~~g---g~~~~~~~~i~~~~~---~g~d~iiiETVG~gq~e--~~~~~~~D~~v~v~~p~~GD~i  180 (323)
T d2qm8a1         109 AIDRNAFIRPSPSSGTLG---GVAAKTRETMLLCEA---AGFDVILVETVGVGQSE--TAVADLTDFFLVLMLPGAGDEL  180 (323)
T ss_dssp             GGCTTEEEECCCCCSSHH---HHHHHHHHHHHHHHH---TTCCEEEEEECSSSSCH--HHHHTTSSEEEEEECSCC----
T ss_pred             hcccceeecccccccccc---chhHHHHHHHHhhcc---CCCCeEEEeehhhhhhh--hhhhcccceEEEEeeccchhhh
Confidence            111344443222221100   011223333444433   37999999998743 33  4455669999999999765311


Q ss_pred             HHHHHHHHHHhcCCC----ceEEEEecccCC
Q 047623          205 DADRVTGLLECDGIR----DIKMVVNRVRTD  231 (340)
Q Consensus       205 ~~~~~~~~l~~~~~~----~~~vviN~~~~~  231 (340)
                               ...+..    -=.+|+|+.+..
T Consensus       181 ---------Q~~k~gilE~aDi~vvNKaD~~  202 (323)
T d2qm8a1         181 ---------QGIKKGIFELADMIAVNKADDG  202 (323)
T ss_dssp             -----------CCTTHHHHCSEEEEECCSTT
T ss_pred             ---------hhhhhhHhhhhheeeEeccccc
Confidence                     111110    124899999854

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.65  E-value=3.5e-05  Score=60.48  Aligned_cols=41  Identities=20%  Similarity=0.140  Sum_probs=36.8

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      |.++|+|+ +-.|+||||++.+|+..|.++|++|.+++.|..
T Consensus         1 m~Pvi~it-G~~GSGKTTL~~~L~~~l~~~g~~v~v~~~d~~   41 (170)
T d1np6a_           1 MIPLLAFA-AWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH   41 (170)
T ss_dssp             CCCEEEEE-CCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             CCCEEEEE-cCCCCCHHHHHHHHHHHHHHCCCeEEEeccccc
Confidence            45688888 555999999999999999999999999999986

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=97.58  E-value=0.0003  Score=59.82  Aligned_cols=87  Identities=20%  Similarity=0.274  Sum_probs=66.8

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCcccccccccHHH
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDMIKGEDMMSVLD  243 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~~~~~~~~~~~~  243 (340)
                      ++.+-+||||+..+  ..+..++..+|.+++|+.....-..++.+..+.+++.+.+. .+++|+.++..   .......+
T Consensus        66 ~~~~n~iDtPGh~dF~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~~~~p~-~i~iNk~D~~~---~~~~~l~~  141 (267)
T d2dy1a2          66 GHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPR-MVVVTKLDKGG---DYYALLED  141 (267)
T ss_dssp             TEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCE-EEEEECGGGCC---CHHHHHHH
T ss_pred             ccceeEEccCchhhhhhhhhhhhcccCceEEEeeccCCccchhHHHHHhhhhccccc-ccccccccccc---cchhhhhh
Confidence            57789999999764  34567889999999999998888888899999999888765 56789999743   22344678


Q ss_pred             HHHHhCCcee-EEec
Q 047623          244 IQEMLGLALL-GVIP  257 (340)
Q Consensus       244 i~~~~g~~v~-~~Ip  257 (340)
                      +++.++ +++ ..+|
T Consensus       142 ~~~~lg-~~vp~~~P  155 (267)
T d2dy1a2         142 LRSTLG-PILPIDLP  155 (267)
T ss_dssp             HHHHHC-SEEECEEE
T ss_pred             HHHHhc-cCcCeEee
Confidence            888888 443 3454

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.30  E-value=0.00045  Score=56.32  Aligned_cols=65  Identities=22%  Similarity=0.333  Sum_probs=55.8

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccC
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRT  230 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~  230 (340)
                      ++.+.|||||+..+  ..+..++..||.+++|+.....-..++.+.+..+...+.+.+.+++|+.+.
T Consensus        66 ~~~i~iiDtPGh~df~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~gi~~iiv~iNK~D~  132 (204)
T d2c78a3          66 KRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDM  132 (204)
T ss_dssp             SCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGG
T ss_pred             CeEEEEEeCCCchhhHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEeccc
Confidence            58899999999654  344677889999999999988777888899999999899888889999986

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.21  E-value=0.0013  Score=54.26  Aligned_cols=38  Identities=34%  Similarity=0.556  Sum_probs=30.8

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCC
Q 047623           53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGL   91 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~   91 (340)
                      |.+..+--|+||||+.-+|..++. .++++.+|..|+..
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~-~~~~~~ivn~d~~~   39 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGV   39 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSC
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh-hCCeEEEEecCccc
Confidence            344448889999999999988764 57899999999863

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=97.05  E-value=0.002  Score=51.88  Aligned_cols=66  Identities=20%  Similarity=0.344  Sum_probs=53.9

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      .+.+.++|||+..+  ..+..++..+|.+++|+.....-..++++.+..+...+.+.+.+++|+.+.-
T Consensus        65 ~~~~~~iDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~~~~~iIv~iNK~D~~  132 (196)
T d1d2ea3          65 ARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAV  132 (196)
T ss_dssp             SCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGC
T ss_pred             eeeEEeecCcchHHHHHHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHhcCCcEEEEEeccccc
Confidence            58899999998543  3334566789999999999877777888888888888888888999999864

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.01  E-value=0.00061  Score=56.37  Aligned_cols=65  Identities=14%  Similarity=0.111  Sum_probs=50.4

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      .+.+.++|||+...  .....++..||.+|+|+.....--....+.++.+...+.+ +.+++|+++.-
T Consensus        69 ~~~~~~iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p-~iivlNK~D~~  135 (227)
T d1g7sa4          69 LPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTP-FVVAANKIDRI  135 (227)
T ss_dssp             CCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCC-EEEEEECGGGS
T ss_pred             ccccccccccceecccccchhcccccceEEEEEecccCcccchhHHHHHhhcCCCe-EEEEEECccCC
Confidence            46789999999543  2234467789999999998776667778888888887775 77999999863

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.99  E-value=0.00084  Score=56.99  Aligned_cols=38  Identities=21%  Similarity=0.298  Sum_probs=32.6

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHHH-HCCCcEEEEecCCC
Q 047623           53 VVITSGKGGVGKTTTTANVGLSLA-RLGFSVVAIDADVG   90 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~la-~~g~~VlliD~D~~   90 (340)
                      +.+.++..|+|||+++.++|..++ +.|.+|+++.++..
T Consensus        37 l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~E~~   75 (277)
T d1cr2a_          37 VIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEES   75 (277)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeeeccc
Confidence            445668999999999999999877 46999999999865

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.00037  Score=54.84  Aligned_cols=39  Identities=33%  Similarity=0.354  Sum_probs=34.8

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      |.|.++ +..|+||||++..++..|...|.+|..+.+++.
T Consensus         2 k~v~It-G~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~~   40 (189)
T d2i3ba1           2 RHVFLT-GPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEV   40 (189)
T ss_dssp             CCEEEE-SCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEE
T ss_pred             cEEEEE-CCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccc
Confidence            456666 899999999999999999999999999998875

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.84  E-value=0.00071  Score=53.56  Aligned_cols=37  Identities=30%  Similarity=0.332  Sum_probs=32.3

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEec
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDA   87 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~   87 (340)
                      ||+|.|.|. .|+||||++..||..|..+|.++..+..
T Consensus         1 mkiivi~G~-~GsGKTT~~~~La~~L~~~~~~~~~~~~   37 (194)
T d1nksa_           1 MKIGIVTGI-PGVGKSTVLAKVKEILDNQGINNKIINY   37 (194)
T ss_dssp             CEEEEEEEC-TTSCHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred             CeEEEEECC-CCCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence            688888855 4999999999999999999999988864

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.83  E-value=0.00058  Score=55.21  Aligned_cols=40  Identities=15%  Similarity=0.181  Sum_probs=35.2

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      +.+.++-+-.|+||||+|..||..+...|.++-+++.|..
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D~~   41 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQY   41 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEcccce
Confidence            4556666999999999999999999999999999999853

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=96.81  E-value=0.0052  Score=51.87  Aligned_cols=42  Identities=26%  Similarity=0.260  Sum_probs=34.8

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      +.++++-|+ +..|+|||++|.+++....+.|.+|++||....
T Consensus        55 p~g~itei~-G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~~   96 (268)
T d1xp8a1          55 PRGRITEIY-GPESGGKTTLALAIVAQAQKAGGTCAFIDAEHA   96 (268)
T ss_dssp             ETTSEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             cCceEEEEe-cCCccchHHHHHHHHHHHHhCCCEEEEEECCcc
Confidence            344555555 788899999999999998888999999999854

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=96.75  E-value=0.0059  Score=51.40  Aligned_cols=41  Identities=37%  Similarity=0.355  Sum_probs=35.0

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      .++++-++ +..|+||||++.+++....+.|.+|++||....
T Consensus        53 ~g~itei~-G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~~   93 (263)
T d1u94a1          53 MGRIVEIY-GPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA   93 (263)
T ss_dssp             TTSEEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CceEEEEe-cCCCcHHHHHHHHHHHHHHcCCCEEEEEccccc
Confidence            44555555 788999999999999999999999999999865

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.58  E-value=0.0029  Score=52.18  Aligned_cols=39  Identities=13%  Similarity=0.173  Sum_probs=33.8

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      .+++..+..|+|||+++.++|..+++.|.+|++++++..
T Consensus        27 sl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~e~~   65 (242)
T d1tf7a2          27 SIILATGATGTGKTLLVSRFVENACANKERAILFAYEES   65 (242)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSC
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeeccCC
Confidence            344445889999999999999999999999999999854

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.53  E-value=0.0096  Score=50.16  Aligned_cols=42  Identities=29%  Similarity=0.264  Sum_probs=35.1

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      +.+++.-+. +..|+||||+|.+++....+.|..|++||....
T Consensus        58 ~~g~i~e~~-G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~~   99 (269)
T d1mo6a1          58 PRGRVIEIY-GPESSGKTTVALHAVANAQAAGGVAAFIDAEHA   99 (269)
T ss_dssp             CSSSEEEEE-CSSSSSHHHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             ccceeEEEe-cCCCcHHHHHHHHHHHHHhcCCCEEEEEECCcc
Confidence            444555555 788999999999999998889999999999865

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.52  E-value=0.0026  Score=49.98  Aligned_cols=65  Identities=18%  Similarity=0.158  Sum_probs=41.2

Q ss_pred             CCEEEEcCCCCCC---H-------HHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCC-CceEEEEecccCC
Q 047623          167 PDFILIDCPAGID---A-------GFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGI-RDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~~---~-------~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~-~~~~vviN~~~~~  231 (340)
                      ..++++|+|+...   .       .....+..||.++++++.+......-..+.+.++.... ..+.+|+|+++..
T Consensus        53 ~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~~~i~~~l~~~~~~~piilv~NK~Dl~  128 (178)
T d1wf3a1          53 RQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAA  128 (178)
T ss_dssp             EEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGC
T ss_pred             eeeeecccccccccccccchhcccccccccccccceeeeechhhhhcccccchhhheeccccchhhhhhhcccccc
Confidence            5678889888431   1       11234567999999987765433333555666665433 4678899999864

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.43  E-value=0.0039  Score=50.84  Aligned_cols=41  Identities=17%  Similarity=0.146  Sum_probs=31.6

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLAR-LGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~-~g~~VlliD~D~~   90 (340)
                      .+.++.|. +..|+|||++|.++|...+. .+.+|++++++..
T Consensus        25 ~G~~~~I~-G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~e~~   66 (242)
T d1tf7a1          25 IGRSTLVS-GTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET   66 (242)
T ss_dssp             TTSEEEEE-ESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC
T ss_pred             CCeEEEEE-eCCCCCHHHHHHHHHHHHHHhcCCCcccccccCC
Confidence            33455554 89999999999999887554 4779999988854

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.21  E-value=0.0014  Score=55.89  Aligned_cols=41  Identities=24%  Similarity=0.420  Sum_probs=33.5

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      +..+|+|+ +..|+||||++..|+..|.+.|.++++|..|.-
T Consensus         3 k~pIIgIa-G~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsf   43 (288)
T d1a7ja_           3 KHPIISVT-GSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF   43 (288)
T ss_dssp             TSCEEEEE-SCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred             CCCEEEEE-CCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCC
Confidence            34589998 667889999999999999999999999999964

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.16  E-value=0.025  Score=44.04  Aligned_cols=66  Identities=18%  Similarity=0.199  Sum_probs=42.2

Q ss_pred             CCCEEEEcCCCCC---------CHHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcC----CCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGI---------DAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDG----IRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~---------~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~----~~~~~vviN~~~~~  231 (340)
                      .+.+.++|+|+..         .......+..+|.++.+...............+.+....    ...+.+|+|+++..
T Consensus        48 ~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~  126 (180)
T d1udxa2          48 EERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLL  126 (180)
T ss_dssp             SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTS
T ss_pred             CCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhhhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhh
Confidence            4677889998832         233445567788888887776555555554444443321    13578899999864

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.12  E-value=0.0034  Score=49.68  Aligned_cols=41  Identities=29%  Similarity=0.309  Sum_probs=34.3

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      ..-+|+|. +-.|+||||+|..|+..+...|..+..++.|..
T Consensus        21 ~~~iIgI~-G~~GSGKSTla~~L~~~l~~~~~~~~~~~~~~~   61 (198)
T d1rz3a_          21 GRLVLGID-GLSRSGKTTLANQLSQTLREQGISVCVFHMDDH   61 (198)
T ss_dssp             SSEEEEEE-ECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred             CCEEEEEE-CCCCCCHHHHHHHHHHHhccccccceecccccc
Confidence            34566666 667889999999999999999999999988754

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.10  E-value=0.002  Score=52.38  Aligned_cols=44  Identities=20%  Similarity=0.237  Sum_probs=36.6

Q ss_pred             CCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEecCCC
Q 047623           46 AGETPRVVVITSGKGGVGKTTTTANVGLSLAR-LGFSVVAIDADVG   90 (340)
Q Consensus        46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~-~g~~VlliD~D~~   90 (340)
                      ..+.+.+|-++ +-.|+||||+|..|+..|.+ .+.++.++|.|.-
T Consensus        20 ~~~kg~vIwlt-GlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~i   64 (208)
T d1m7ga_          20 RNQRGLTIWLT-GLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI   64 (208)
T ss_dssp             HTSSCEEEEEE-CSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred             hCCCCeEEEEE-CCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHH
Confidence            35667788887 77889999999999988864 5889999999964

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.02  E-value=0.0026  Score=49.81  Aligned_cols=37  Identities=32%  Similarity=0.412  Sum_probs=31.4

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      |+|+|. +-.|+||||++..|+..|...|.++.++..+
T Consensus         2 kiI~i~-G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~~   38 (190)
T d1khta_           2 KVVVVT-GVPGVGSTTSSQLAMDNLRKEGVNYKMVSFG   38 (190)
T ss_dssp             CEEEEE-CCTTSCHHHHHHHHHHHHHTTTCCCEEEEHH
T ss_pred             CEEEEE-CCCCCCHHHHHHHHHHHHHHcCCCeEEEecC
Confidence            677777 5667999999999999999999888887654

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.92  E-value=0.012  Score=48.74  Aligned_cols=66  Identities=21%  Similarity=0.279  Sum_probs=52.6

Q ss_pred             CCCEEEEcCCCCCCHH--HHHHHhcCCeEEEEeCCChhhHH-------HHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGIDAG--FITAITPANEAVLVTTPDITSLR-------DADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~~~--~~~~l~~ad~viiv~~~~~~s~~-------~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      ++.+.|||||+..+..  +...+..+|.+++++.+....++       ++.+.+..++..+++.+.+++|+.+..
T Consensus        83 ~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~gv~~iiv~iNKmD~~  157 (239)
T d1f60a3          83 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSV  157 (239)
T ss_dssp             SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGG
T ss_pred             CEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHcCCCeEEEEEECCCCC
Confidence            5899999999987653  34566789999999998766543       467777777888999999999999864

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.92  E-value=0.017  Score=44.65  Aligned_cols=45  Identities=13%  Similarity=0.231  Sum_probs=32.0

Q ss_pred             HHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccC
Q 047623          185 AITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRT  230 (340)
Q Consensus       185 ~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~  230 (340)
                      .+..||.++++...+.........+.+.++..+.+ +.+|+|+++.
T Consensus        77 ~~~~ad~i~~~~~~~~~~~~~~~~~~~~l~~~~~p-viiv~NK~Dl  121 (171)
T d1mkya1          77 MIREADLVLFVVDGKRGITKEDESLADFLRKSTVD-TILVANKAEN  121 (171)
T ss_dssp             HHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCC-EEEEEESCCS
T ss_pred             ccccCcEEEEeeccccccccccccccccccccccc-ccccchhhhh
Confidence            45668888877777665555556677777766654 6688999875

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.91  E-value=0.093  Score=42.45  Aligned_cols=36  Identities=28%  Similarity=0.475  Sum_probs=26.3

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      |.+.++=-|+||||+..++...  ..|.|+++|--|..
T Consensus         5 v~iitGFLGaGKTTll~~lL~~--~~~~riaVI~Ne~g   40 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE--QHGYKIAVIENEFG   40 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS--CCCCCEEEECSSCC
T ss_pred             EEEEeeCCCCCHHHHHHHHHhc--CCCCcEEEEEeccc
Confidence            3445566799999997776553  45899999987753

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=95.90  E-value=0.0041  Score=53.63  Aligned_cols=43  Identities=30%  Similarity=0.302  Sum_probs=35.9

Q ss_pred             CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC--CCcEEEEecCCC
Q 047623           47 GETPRVVVITSGKGGVGKTTTTANVGLSLARL--GFSVVAIDADVG   90 (340)
Q Consensus        47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~--g~~VlliD~D~~   90 (340)
                      .+.+-+|+|. +..|+||||+|..|+..|++.  +.+|.+|.+|--
T Consensus        77 ~k~P~iIGIa-G~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F  121 (308)
T d1sq5a_          77 QRIPYIISIA-GSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF  121 (308)
T ss_dssp             CCCCEEEEEE-ECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             CCCCEEEEEe-CCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeee
Confidence            4556778777 677899999999999999864  789999999964

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.82  E-value=0.0035  Score=49.60  Aligned_cols=40  Identities=30%  Similarity=0.362  Sum_probs=32.6

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      ++.+|.++ +-.|+||||+|..||..+...+..+..++.|.
T Consensus        18 ~g~vI~L~-G~pGSGKTTiAk~La~~l~~~~~~~~~~~~d~   57 (195)
T d1x6va3          18 RGCTVWLT-GLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN   57 (195)
T ss_dssp             CCEEEEEE-SSCHHHHHHHHHHHHHHHHHTTCCEEEECHHH
T ss_pred             CCeEEEEE-CCCCCCHHHHHHHHHHHHHhcCCCccchhHHh
Confidence            45677655 77799999999999999999888877776654

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.64  E-value=0.0071  Score=46.80  Aligned_cols=41  Identities=22%  Similarity=0.262  Sum_probs=30.9

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCC-CcEEEEecCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLG-FSVVAIDADV   89 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g-~~VlliD~D~   89 (340)
                      ..+.+|.++ +-.|+||||+|..||..|...+ ..+.++|.|.
T Consensus         4 ~~g~~I~l~-G~~GsGKTTia~~La~~L~~~~~~~~~~~~~~~   45 (183)
T d1m8pa3           4 TQGFTIFLT-GYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT   45 (183)
T ss_dssp             TCCEEEEEE-CSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred             CCCeEEEEE-CCCCCCHHHHHHHHHHHHhhcCCCchhhhhhHH
Confidence            455677777 7789999999999999998654 3555666553

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=95.60  E-value=0.011  Score=48.24  Aligned_cols=67  Identities=16%  Similarity=0.269  Sum_probs=56.2

Q ss_pred             CCCEEEEcCCCCCCH--HHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCc
Q 047623          166 SPDFILIDCPAGIDA--GFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDM  232 (340)
Q Consensus       166 ~~D~VIiD~~~~~~~--~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~  232 (340)
                      .+.+.|||||+..+.  -+...+..+|.+++|+.....-..++.+.+..+...+++.+.+++|+.+...
T Consensus        88 ~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~~~~~~gv~~iiv~vNK~D~~~  156 (222)
T d1zunb3          88 KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNG  156 (222)
T ss_dssp             SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTT
T ss_pred             ceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHHHHHHHHcCCCEEEEEEEcccccc
Confidence            578999999997543  3455678899999999998887888888888888899999999999998754

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=95.58  E-value=0.0059  Score=51.29  Aligned_cols=38  Identities=21%  Similarity=0.193  Sum_probs=31.2

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHC----------CCcEEEEecCCC
Q 047623           53 VVITSGKGGVGKTTTTANVGLSLARL----------GFSVVAIDADVG   90 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~la~~----------g~~VlliD~D~~   90 (340)
                      ++++.+.+|+||||++.+||..+|..          +.+|++++++..
T Consensus        31 ~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~~E~~   78 (274)
T d1nlfa_          31 VGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP   78 (274)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHcCCCcccccccCCCceEEEeccch
Confidence            56667999999999999999998852          347888888764

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=95.36  E-value=0.005  Score=47.61  Aligned_cols=35  Identities=20%  Similarity=0.311  Sum_probs=26.0

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      ++|.++ +-.|+||||+|..||..+   |.+...+|.|.
T Consensus         4 kiI~l~-G~~GsGKsTva~~L~~~l---~~~~~~~~~d~   38 (178)
T d1qhxa_           4 RMIILN-GGSSAGKSGIVRCLQSVL---PEPWLAFGVDS   38 (178)
T ss_dssp             CEEEEE-CCTTSSHHHHHHHHHHHS---SSCEEEEEHHH
T ss_pred             eEEEEE-CCCCCCHHHHHHHHHHHc---CCCeEEeecch
Confidence            455555 888999999999988865   55666666653

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.32  E-value=0.011  Score=47.80  Aligned_cols=38  Identities=18%  Similarity=0.275  Sum_probs=32.5

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEec
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDA   87 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~   87 (340)
                      .++.|+|- +=-|+||||.+..|+..|..+|.+|.+++.
T Consensus         2 rG~lI~ie-G~dGsGKsT~~~~L~~~L~~~g~~v~~~~~   39 (209)
T d1nn5a_           2 RGALIVLE-GVDRAGKSTQSRKLVEALCAAGHRAELLRF   39 (209)
T ss_dssp             CCCEEEEE-ESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CeeEEEEE-CCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence            45778887 455799999999999999999999998873

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.10  E-value=0.0062  Score=47.40  Aligned_cols=28  Identities=18%  Similarity=0.236  Sum_probs=22.8

Q ss_pred             CCCCEEEEEEcCCCCCcHHHHHHHHHHHH
Q 047623           47 GETPRVVVITSGKGGVGKTTTTANVGLSL   75 (340)
Q Consensus        47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~l   75 (340)
                      .-.+|.|+|.|+ .|+||||+|..||..+
T Consensus         4 ~~~~K~I~i~G~-~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           4 PFFAKTVAILGG-ESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             GGTCEEEEEECC-TTSHHHHHHHHHHHHT
T ss_pred             CccceEEEEECC-CCCCHHHHHHHHHHHh
Confidence            346789999855 5999999999999865

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.99  E-value=0.0098  Score=47.94  Aligned_cols=38  Identities=21%  Similarity=0.267  Sum_probs=30.9

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHC-----CCcEEEEecCC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARL-----GFSVVAIDADV   89 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~-----g~~VlliD~D~   89 (340)
                      -+|+|+ +..|+||||+|..|+..|...     +.+|.++.+|-
T Consensus         3 ~iIgI~-G~~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~D~   45 (213)
T d1uj2a_           3 FLIGVS-GGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDS   45 (213)
T ss_dssp             EEEEEE-CSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGG
T ss_pred             EEEEEE-CCCCCCHHHHHHHHHHHhchhccccCCCceEEEeccc
Confidence            477777 677889999999999998754     35788999884

>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: ATP:corrinoid adenosyltransferase CobA
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.98  E-value=0.027  Score=43.17  Aligned_cols=31  Identities=23%  Similarity=0.153  Sum_probs=27.1

Q ss_pred             CCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           59 KGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        59 kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      .-|=||||.|..+|...+-+|+||+++-+==
T Consensus        10 G~GKGKTTAAlG~alRA~G~G~rV~ivQFlK   40 (157)
T d1g5ta_          10 GNGKGKTTAAFGTAARAVGHGKNVGVVQFIK   40 (157)
T ss_dssp             SSSSCHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCCCCcHHHHHHHHHHHhcCCCEEEEEEEec
Confidence            3466999999999999999999999997753

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=94.66  E-value=0.01  Score=45.45  Aligned_cols=26  Identities=38%  Similarity=0.632  Sum_probs=20.4

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHH
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSL   75 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~l   75 (340)
                      |.|+|.++ +..|+||||+|..||..+
T Consensus         1 M~klI~i~-G~~GsGKTTva~~L~~~~   26 (176)
T d2bdta1           1 MKKLYIIT-GPAGVGKSTTCKRLAAQL   26 (176)
T ss_dssp             CEEEEEEE-CSTTSSHHHHHHHHHHHS
T ss_pred             CCeEEEEE-CCCCCCHHHHHHHHHHHc
Confidence            44566665 889999999999988754

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=94.61  E-value=0.4  Score=37.15  Aligned_cols=41  Identities=12%  Similarity=0.194  Sum_probs=25.9

Q ss_pred             CCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccC
Q 047623          189 ANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRT  230 (340)
Q Consensus       189 ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~  230 (340)
                      +|.++++++.+..-.....++++.+...+. .+.+|+|+.+.
T Consensus       106 ~~~vi~viD~~~~~~~~~~~~~~~l~~~~~-piivv~NK~D~  146 (195)
T d1svia_         106 LKAVVQIVDLRHAPSNDDVQMYEFLKYYGI-PVIVIATKADK  146 (195)
T ss_dssp             EEEEEEEEETTSCCCHHHHHHHHHHHHTTC-CEEEEEECGGG
T ss_pred             hhhhhhhhhccccccccccccccccccccC-cceechhhccc
Confidence            455666665543333444566677776655 48899999985

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.49  E-value=0.011  Score=45.53  Aligned_cols=35  Identities=23%  Similarity=0.425  Sum_probs=24.8

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      +++|.+. +-.|+||||+|..||..   .|.+...+|.|
T Consensus         4 g~iI~l~-G~~GsGKSTia~~La~~---lg~~~~~~~~d   38 (176)
T d1zp6a1           4 GNILLLS-GHPGSGKSTIAEALANL---PGVPKVHFHSD   38 (176)
T ss_dssp             TEEEEEE-ECTTSCHHHHHHHHHTC---SSSCEEEECTT
T ss_pred             CeEEEEE-CCCCCCHHHHHHHHHHH---hCCCEEEecHH
Confidence            4555555 78899999998766542   37788777765

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=94.48  E-value=0.016  Score=45.78  Aligned_cols=29  Identities=34%  Similarity=0.487  Sum_probs=22.9

Q ss_pred             CCCCCEEEEEEcCCCCCcHHHHHHHHHHHH
Q 047623           46 AGETPRVVVITSGKGGVGKTTTTANVGLSL   75 (340)
Q Consensus        46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~l   75 (340)
                      ..+++++|++. +-.|+||||+|..||..+
T Consensus         2 ~~~kp~iI~i~-G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           2 EKSKPNVVFVL-GGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CCCCCEEEEEE-ESTTSSHHHHHHHHHHHH
T ss_pred             CCCCCcEEEEE-CCCCCCHHHHHHHHHHHH
Confidence            34666788777 677899999999998765

>d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella thermoacetica [TaxId: 1525]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Formyltetrahydrofolate synthetase
species: Moorella thermoacetica [TaxId: 1525]

Probab=94.38  E-value=0.029  Score=50.93  Aligned_cols=52  Identities=29%  Similarity=0.402  Sum_probs=43.2

Q ss_pred             CCCCEEEEEEcC---CCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCc
Q 047623           47 GETPRVVVITSG---KGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLE  101 (340)
Q Consensus        47 ~~~~~iI~v~s~---kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~  101 (340)
                      ++.+|.|.|++-   .-|.||||++..|+..|++.|+++++.   .+.|++.-.||++
T Consensus        48 ~~~gklilVTaitPTp~GEGKtTttiGL~~aL~~lgk~~~~~---lRePSlGP~fGiK  102 (549)
T d1eg7a_          48 KPDGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVC---LREPSLGPSFGIK  102 (549)
T ss_dssp             SCCCEEEEEEESSCCTTCCCHHHHHHHHHHHHHHTTCCEEEE---ECCCCSTHHHHTT
T ss_pred             CCCceEEEEEeCCCCCCCCCcceeHHhHHHHHHHhCCceEEE---EecCCCCCccccc
Confidence            456789988875   459999999999999999999999876   4458888888766

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=94.30  E-value=0.013  Score=45.43  Aligned_cols=34  Identities=26%  Similarity=0.519  Sum_probs=25.4

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      |.+.|.++ +-.|+||||+|..||..|   |++  ++|.|
T Consensus         1 M~~~Iil~-G~~GsGKSTia~~LA~~L---g~~--~id~D   34 (170)
T d1e6ca_           1 MTEPIFMV-GARGCGMTTVGRELARAL---GYE--FVDTD   34 (170)
T ss_dssp             CCCCEEEE-SCTTSSHHHHHHHHHHHH---TCE--EEEHH
T ss_pred             CCCCEEEE-CCCCCCHHHHHHHHHHHh---CCC--EEehh
Confidence            34566666 668999999999999766   555  56776

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.19  E-value=0.031  Score=44.44  Aligned_cols=36  Identities=25%  Similarity=0.371  Sum_probs=30.7

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      +|+|- +--|+||||++..|+..|..+|.+|.++..-
T Consensus         2 lI~ie-G~dGsGKST~~~~L~~~l~~~g~~v~~~~~P   37 (208)
T d1gsia_           2 LIAIE-GVDGAGKRTLVEKLSGAFRAAGRSVATLAFP   37 (208)
T ss_dssp             EEEEE-CSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEEE-CCCCCCHHHHHHHHHHHHHHCCCCEEEEecC
Confidence            35554 7789999999999999999999999988654

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.16  E-value=0.031  Score=47.32  Aligned_cols=43  Identities=21%  Similarity=0.193  Sum_probs=33.4

Q ss_pred             CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC---CCcEEEEecCCC
Q 047623           47 GETPRVVVITSGKGGVGKTTTTANVGLSLARL---GFSVVAIDADVG   90 (340)
Q Consensus        47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~---g~~VlliD~D~~   90 (340)
                      ++.+-+|+|. +-.|+||||+|..|...|.++   +.+|.++..|--
T Consensus        24 ~~~P~iIGi~-G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~Ddf   69 (286)
T d1odfa_          24 NKCPLFIFFS-GPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF   69 (286)
T ss_dssp             CCSCEEEEEE-CCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred             CCCCEEEEeE-CCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCC
Confidence            3445577776 677899999999999888764   457999988864

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=94.12  E-value=0.18  Score=38.90  Aligned_cols=52  Identities=23%  Similarity=0.286  Sum_probs=38.2

Q ss_pred             CHHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          179 DAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       179 ~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      .......+..+|.+++++..+.........+...++..+. ...+|+|+.+..
T Consensus        82 ~~~~~~~~~~~dvii~v~d~~~~~~~~~~~~~~~~~~~~~-~~i~v~nK~D~~  133 (186)
T d1mkya2          82 NYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGR-ASVVVFNKWDLV  133 (186)
T ss_dssp             CHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTC-EEEEEEECGGGS
T ss_pred             hHHHHHHHhcCCEEEEeecccccchhhHHHHHHHHHHcCC-ceeeeccchhhh
Confidence            3445666778999999998877666667777777776554 567889998853

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=93.89  E-value=0.014  Score=44.09  Aligned_cols=32  Identities=28%  Similarity=0.489  Sum_probs=23.7

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      |.|.++ +-.|+||||+|..||..|   |.++  +|.|
T Consensus         3 k~I~l~-G~~GsGKSTvak~La~~L---~~~~--id~~   34 (169)
T d1kaga_           3 RNIFLV-GPMGAGKSTIGRQLAQQL---NMEF--YDSD   34 (169)
T ss_dssp             CCEEEE-CCTTSCHHHHHHHHHHHT---TCEE--EEHH
T ss_pred             CeEEEE-CCCCCCHHHHHHHHHHHh---CCCe--Eeec
Confidence            346666 888999999999999875   5554  4555

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=93.88  E-value=0.03  Score=42.85  Aligned_cols=28  Identities=25%  Similarity=0.471  Sum_probs=22.6

Q ss_pred             CCCCEEEEEEcCCCCCcHHHHHHHHHHHH
Q 047623           47 GETPRVVVITSGKGGVGKTTTTANVGLSL   75 (340)
Q Consensus        47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~l   75 (340)
                      ..+.++|.+. +-.|+||||+|..||..+
T Consensus         3 ~~~~~iivl~-G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_           3 NHDHHIYVLM-GVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             CTTSEEEEEE-CSTTSCHHHHHHHHHHHH
T ss_pred             CCCCeEEEEE-CCCCCCHHHHHHHHHHHh
Confidence            3556777766 778899999999999876

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.67  E-value=0.036  Score=48.14  Aligned_cols=66  Identities=20%  Similarity=0.205  Sum_probs=54.0

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCc
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDM  232 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~  232 (340)
                      .|-+-|||||+..  ...+..++..+|.+++|++....-...+.++++.+...+.+ ..+++|+.++..
T Consensus        95 ~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~~~p-~i~viNKiDr~~  162 (341)
T d1n0ua2          95 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIK-PVVVINKVDRAL  162 (341)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCE-EEEEEECHHHHH
T ss_pred             ceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHHcCCC-eEEEEECccccc
Confidence            3557789999965  56677889999999999999888888888999988887765 467889988643

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=93.61  E-value=0.07  Score=43.97  Aligned_cols=66  Identities=21%  Similarity=0.354  Sum_probs=47.1

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHH-------HHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLR-------DADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~-------~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      .+.+.++|||++.+  ..+...+..+|.+++|+.....-..       .+.+.+..+...+.+.+.+++|+.+..
T Consensus       101 ~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~~i~~iiv~iNKmD~~  175 (245)
T d1r5ba3         101 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEP  175 (245)
T ss_dssp             SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTST
T ss_pred             cceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHcCCCeEEEEEEcCCCC
Confidence            57899999999654  3345567889999999998765544       566777777788899999999999864

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=93.44  E-value=0.026  Score=42.37  Aligned_cols=35  Identities=23%  Similarity=0.264  Sum_probs=22.1

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      |.++|. +.+-.|+||||+|..|+.    .......++.|
T Consensus         1 MkklIi-i~G~pGsGKTTla~~L~~----~~~~~~~~~~d   35 (152)
T d1ly1a_           1 MKKIIL-TIGCPGSGKSTWAREFIA----KNPGFYNINRD   35 (152)
T ss_dssp             CCEEEE-EECCTTSSHHHHHHHHHH----HSTTEEEECHH
T ss_pred             CCEEEE-EECCCCCCHHHHHHHHHH----hCCCCEEechH
Confidence            445555 458899999999876643    22345555544

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.37  E-value=0.031  Score=42.92  Aligned_cols=31  Identities=32%  Similarity=0.574  Sum_probs=23.2

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      ++| ++ +-.|+||||++..||..|   |.+  ++|+|
T Consensus         3 ~Iv-li-G~~G~GKSTig~~La~~l---~~~--fiD~D   33 (165)
T d2iyva1           3 KAV-LV-GLPGSGKSTIGRRLAKAL---GVG--LLDTD   33 (165)
T ss_dssp             SEE-EE-CSTTSSHHHHHHHHHHHH---TCC--EEEHH
T ss_pred             cEE-EE-CCCCCCHHHHHHHHHHHh---CCC--eEeec
Confidence            444 44 668999999999999877   445  46776

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=93.17  E-value=0.035  Score=44.54  Aligned_cols=33  Identities=48%  Similarity=0.758  Sum_probs=24.6

Q ss_pred             CE-EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           50 PR-VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        50 ~~-iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      || +|+++ +.-|+||||+|-    .|.+.|.+|  +|+|.
T Consensus         2 mk~iIgit-G~igSGKStv~~----~l~~~G~~v--idaD~   35 (208)
T d1vhta_           2 LRYIVALT-GGIGSGKSTVAN----AFADLGINV--IDADI   35 (208)
T ss_dssp             CCEEEEEE-CCTTSCHHHHHH----HHHHTTCEE--EEHHH
T ss_pred             CCEEEEEE-CCCcCCHHHHHH----HHHHCCCcE--EEchH
Confidence            44 89999 555999999774    567789765  67764

>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramyl tripeptide synthetase MurE
species: Escherichia coli [TaxId: 562]

Probab=93.11  E-value=0.052  Score=43.87  Aligned_cols=35  Identities=31%  Similarity=0.252  Sum_probs=30.8

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEE
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAI   85 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vlli   85 (340)
                      +..++|+|+|   -.||||++.-|+..|...|+++.++
T Consensus         3 ~~~~vI~ITG---T~GKTTt~~~l~~iL~~~g~~~~~~   37 (234)
T d1e8ca3           3 DNLRLVGVTG---TNGKTTTTQLLAQWSQLLGEISAVM   37 (234)
T ss_dssp             GSSEEEEEES---SSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             cCCeEEEEEC---CCcHHHHHHHHHHHHHHCCCCeEEE
Confidence            4558999995   4599999999999999999999886

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.10  E-value=0.051  Score=45.68  Aligned_cols=27  Identities=15%  Similarity=0.236  Sum_probs=21.9

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHH
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSL   75 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~l   75 (340)
                      ....+|++. +-||+||||+|.++....
T Consensus        42 ~~~~~v~I~-GmgGiGKTtLA~~v~~~~   68 (277)
T d2a5yb3          42 LDSFFLFLH-GRAGSGKSVIASQALSKS   68 (277)
T ss_dssp             SSSEEEEEE-CSTTSSHHHHHHHHHHHC
T ss_pred             CCceEEEEE-CCCCCCHHHHHHHHHHhh
Confidence            445788888 799999999999987653

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=93.06  E-value=0.033  Score=42.69  Aligned_cols=27  Identities=30%  Similarity=0.429  Sum_probs=20.4

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHH
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSL   75 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~l   75 (340)
                      +.+..|.++ +..|+||||+|..||..+
T Consensus         3 pk~~~I~i~-G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           3 PKGINILIT-GTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             CSSCEEEEE-CSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEE-eCCCCCHHHHHHHHHHHh
Confidence            344456666 888999999998888764

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=92.94  E-value=0.042  Score=43.89  Aligned_cols=65  Identities=17%  Similarity=0.215  Sum_probs=49.1

Q ss_pred             CCEEEEcCCCCCCH--HHHHHHhcCCeEEEEeCCChh-hHHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          167 PDFILIDCPAGIDA--GFITAITPANEAVLVTTPDIT-SLRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       167 ~D~VIiD~~~~~~~--~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      ..+.+||||+..+.  .+...+..||.+++++..... ....+++.+..+...+.+.+.+++|+.+.-
T Consensus        86 r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~i~~iIV~vNK~Dl~  153 (205)
T d2qn6a3          86 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVV  153 (205)
T ss_dssp             EEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECGGGS
T ss_pred             EEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHcCCceeeeccccCCCc
Confidence            45789999996533  345566789999999988664 245667777777777888888899999874

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.91  E-value=0.041  Score=44.70  Aligned_cols=66  Identities=23%  Similarity=0.273  Sum_probs=49.6

Q ss_pred             CCCEEEEcCCCCCCHH--HHHHHhcCCeEEEEeCCChhh-------HHHHHHHHHHHHhcCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGIDAG--FITAITPANEAVLVTTPDITS-------LRDADRVTGLLECDGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~~~--~~~~l~~ad~viiv~~~~~~s-------~~~~~~~~~~l~~~~~~~~~vviN~~~~~  231 (340)
                      .+.+-|||||+..+..  +...+..+|.+++|+.....-       ...+.+.+..+...+.+.+.+++|+.+..
T Consensus        80 ~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~~~~iIv~iNK~D~~  154 (224)
T d1jnya3          80 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLT  154 (224)
T ss_dssp             SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGS
T ss_pred             CceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHhCCCceEEEEEcccCC
Confidence            5889999999987554  456778899999999886542       23455566666667888888999999864

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.76  E-value=0.044  Score=43.04  Aligned_cols=24  Identities=33%  Similarity=0.405  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHH
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSL   75 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~l   75 (340)
                      .+|++.|+ .|+||||.|..||..+
T Consensus         2 ~iI~i~Gp-pGSGKsT~a~~La~~~   25 (194)
T d1teva_           2 LVVFVLGG-PGAGKGTQCARIVEKY   25 (194)
T ss_dssp             EEEEEECC-TTSSHHHHHHHHHHHH
T ss_pred             cEEEEECC-CCCCHHHHHHHHHHHh
Confidence            57777755 9999999999999865

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=92.74  E-value=0.053  Score=44.74  Aligned_cols=39  Identities=31%  Similarity=0.419  Sum_probs=27.1

Q ss_pred             CCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           46 AGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      ....++.|.+. +-.|+||||+|..||..+   +.....|++|
T Consensus        28 ~~~~P~~ilL~-GpPGtGKT~la~~la~~~---~~~~~~i~~d   66 (273)
T d1gvnb_          28 AVESPTAFLLG-GQPGSGKTSLRSAIFEET---QGNVIVIDND   66 (273)
T ss_dssp             CCSSCEEEEEE-CCTTSCTHHHHHHHHHHT---TTCCEEECTH
T ss_pred             CCCCCEEEEEE-CCCCCCHHHHHHHHHHHh---hcceEEEecH
Confidence            34445555555 888999999998777654   5566777664

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=92.52  E-value=0.051  Score=43.34  Aligned_cols=34  Identities=41%  Similarity=0.550  Sum_probs=26.1

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      |+.+|+++ +.-|+||||+|    ..|.+.|..|  +|+|.
T Consensus         1 M~~iIgIT-G~igSGKStv~----~~l~~~G~~v--idaD~   34 (205)
T d1jjva_           1 MTYIVGLT-GGIGSGKTTIA----NLFTDLGVPL--VDADV   34 (205)
T ss_dssp             CCEEEEEE-CSTTSCHHHHH----HHHHTTTCCE--EEHHH
T ss_pred             CcEEEEEE-CCCCCCHHHHH----HHHHHCCCeE--EEchH
Confidence            56789999 67789999975    4667778876  57773

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=92.47  E-value=0.031  Score=45.34  Aligned_cols=30  Identities=27%  Similarity=0.230  Sum_probs=23.5

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCc
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARLGFS   81 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~   81 (340)
                      .+++..+-.|+|||+++.++|..++..|..
T Consensus        35 ~l~~i~G~~G~GKT~~~l~~a~~~~~~~~~   64 (258)
T d2i1qa2          35 SVTEFAGVFGSGKTQIMHQSCVNLQNPEFL   64 (258)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTCGGGE
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHhcCCC
Confidence            344445889999999999999998865543

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=92.22  E-value=0.091  Score=41.80  Aligned_cols=40  Identities=33%  Similarity=0.483  Sum_probs=32.3

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      ++.|+|- +--|+||||.+..|+..|.+.|.++.++-.-|.
T Consensus         2 gkfIviE-G~dGsGKsT~~~~L~~~L~~~g~~~~~~~~ep~   41 (210)
T d4tmka_           2 SKYIVIE-GLEGAGKTTARNVVVETLEQLGIRDMVFTREPG   41 (210)
T ss_dssp             CCEEEEE-ECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSC
T ss_pred             CCEEEEE-CCCCCCHHHHHHHHHHHHHhCCCCeEEEecCCC
Confidence            5677776 566899999999999999999988766655553

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=92.21  E-value=0.054  Score=42.77  Aligned_cols=66  Identities=15%  Similarity=0.182  Sum_probs=48.6

Q ss_pred             CCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhh-HHHHHHHHHHHHhcCCCceEEEEecccCCc
Q 047623          167 PDFILIDCPAGID--AGFITAITPANEAVLVTTPDITS-LRDADRVTGLLECDGIRDIKMVVNRVRTDM  232 (340)
Q Consensus       167 ~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s-~~~~~~~~~~l~~~~~~~~~vviN~~~~~~  232 (340)
                      +-+.++|||+...  ..+...+..+|.+++++...... ...+.+.+..+...+.+.+.+++|+.+...
T Consensus        78 ~~~~~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~~~~iiv~inK~D~~d  146 (195)
T d1kk1a3          78 RRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVD  146 (195)
T ss_dssp             EEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSC
T ss_pred             eeEeeeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhcCccceeeeecccchh
Confidence            5589999999642  23344567899999999877654 445677777777778888889999987643

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=92.07  E-value=0.17  Score=39.92  Aligned_cols=42  Identities=24%  Similarity=0.355  Sum_probs=29.8

Q ss_pred             hhhHHHHHhhCCCCCCCCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHH
Q 047623           30 KSSIQSVLQWNRKPELAGETPRVVVITSGKGGVGKTTTTANVGLSLAR   77 (340)
Q Consensus        30 ~~~~~~~l~~~~~~~~~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~   77 (340)
                      ..++.+.++.-.    ++....++.|  +..|||||+++-.||..+..
T Consensus        28 d~Ei~~l~~iL~----r~~k~n~lLv--G~pGVGKTalv~~LA~ri~~   69 (195)
T d1jbka_          28 DEEIRRTIQVLQ----RRTKNNPVLI--GEPGVGKTAIVEGLAQRIIN   69 (195)
T ss_dssp             HHHHHHHHHHHT----SSSSCEEEEE--CCTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh----ccCCCCeEEE--ecCCcccHHHHHHHHHHHHh
Confidence            344555555433    2344566655  88999999999999999986

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=92.02  E-value=0.47  Score=38.99  Aligned_cols=145  Identities=14%  Similarity=0.187  Sum_probs=68.5

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccc
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKR  127 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  127 (340)
                      +.++.+.+. +-.|+|||++|..+|..+   |.++..+++.-   -.+.+.|...   ..+..++.........+.-   
T Consensus        43 ~~~~~iLL~-GppGtGKT~la~~iA~~~---~~~~~~i~~~~---l~~~~~g~~~---~~l~~~f~~A~~~~P~il~---  109 (256)
T d1lv7a_          43 KIPKGVLMV-GPPGTGKTLLAKAIAGEA---KVPFFTISGSD---FVEMFVGVGA---SRVRDMFEQAKKAAPCIIF---  109 (256)
T ss_dssp             CCCCEEEEE-CCTTSCHHHHHHHHHHHH---TCCEEEECSCS---STTSCCCCCH---HHHHHHHHHHHTTCSEEEE---
T ss_pred             CCCCeEEee-CCCCCCccHHHHHHHHHc---CCCEEEEEhHH---hhhcchhHHH---HHHHHHHHHHHHcCCEEEE---
Confidence            334556655 778999999999998765   66777776532   2233443221   2233333211111111111   


Q ss_pred             cCceeEeecCCCCCCCCC-CcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHHHHHHHh--cCCeEEEEeCCChhhHH
Q 047623          128 WSNFELLCISKPRSKLPL-GFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAGFITAIT--PANEAVLVTTPDITSLR  204 (340)
Q Consensus       128 ~~~l~~l~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~~~~~l~--~ad~viiv~~~~~~s~~  204 (340)
                      .++++.+........... ......+..++..+.. ......+++|=+.+.......+.+.  .-|..+-+-.|+.....
T Consensus       110 iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~-~~~~~~v~vIatTn~~~~ld~al~R~gRfd~~i~i~~P~~~~R~  188 (256)
T d1lv7a_         110 IDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDG-FEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGRE  188 (256)
T ss_dssp             ETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHT-CCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHH
T ss_pred             EEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhC-CCCCCCEEEEEeCCCcccCCHhHcCCCCCCEEEECCCcCHHHHH
Confidence            144444332221111110 0111122334444432 2334556777666654443333443  35778887777765544


Q ss_pred             HH
Q 047623          205 DA  206 (340)
Q Consensus       205 ~~  206 (340)
                      ..
T Consensus       189 ~i  190 (256)
T d1lv7a_         189 QI  190 (256)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.75  E-value=0.077  Score=41.71  Aligned_cols=27  Identities=22%  Similarity=0.348  Sum_probs=22.2

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHH
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSL   75 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~l   75 (340)
                      +..++|.+. +-.|+||||+|..||..+
T Consensus         6 ~~~~iI~i~-GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           6 DQVSVIFVL-GGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             TTCEEEEEE-CSTTSSHHHHHHHHHHHS
T ss_pred             CCCcEEEEE-CCCCCCHHHHHHHHHHHh
Confidence            456788887 667999999999998865

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=91.64  E-value=0.062  Score=40.83  Aligned_cols=28  Identities=36%  Similarity=0.618  Sum_probs=20.4

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcE
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSV   82 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~V   82 (340)
                      ++|+ ++ +-.|+||||+|..||..+   |+++
T Consensus         5 ~~I~-i~-G~pGsGKTTia~~La~~l---~~~~   32 (173)
T d1rkba_           5 PNIL-LT-GTPGVGKTTLGKELASKS---GLKY   32 (173)
T ss_dssp             CCEE-EE-CSTTSSHHHHHHHHHHHH---CCEE
T ss_pred             CEEE-EE-CCCCCCHHHHHHHHHHHH---CCcE
Confidence            3444 55 777999999999888765   5554

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.60  E-value=0.065  Score=43.63  Aligned_cols=40  Identities=23%  Similarity=0.243  Sum_probs=31.0

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHC------CCcEEEEecCCC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARL------GFSVVAIDADVG   90 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~------g~~VlliD~D~~   90 (340)
                      +.++.| .+..|+||||++.++|...++.      |.+++.+++...
T Consensus        36 G~~~li-~G~pGsGKT~~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (254)
T d1pzna2          36 QAITEV-FGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT   81 (254)
T ss_dssp             SEEEEE-EESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred             CEEEEE-EcCCCCCHHHHHHHHHHHhhchHHhcCCCceEEEEeccch
Confidence            344444 5888999999999999988743      568888888765

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=91.58  E-value=0.054  Score=41.37  Aligned_cols=30  Identities=30%  Similarity=0.460  Sum_probs=22.9

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      |.++ +-.|+||||++..||..|   |.+  ++|+|
T Consensus         3 I~li-G~~GsGKsTi~k~La~~l---~~~--~~d~d   32 (161)
T d1viaa_           3 IVFI-GFMGSGKSTLARALAKDL---DLV--FLDSD   32 (161)
T ss_dssp             EEEE-CCTTSCHHHHHHHHHHHH---TCE--EEEHH
T ss_pred             EEEE-CCCCCCHHHHHHHHHHHh---CCC--EEecC
Confidence            4555 568999999999999987   443  46776

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=91.49  E-value=0.058  Score=43.22  Aligned_cols=26  Identities=15%  Similarity=0.325  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHH
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLA   76 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la   76 (340)
                      +++....+..|+||||.|..||..|.
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~~lg   28 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAKDFG   28 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            33333458889999999999999773

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=91.48  E-value=0.07  Score=41.98  Aligned_cols=27  Identities=22%  Similarity=0.407  Sum_probs=21.9

Q ss_pred             CCCCCEEEEEEcCCCCCcHHHHHHHHHHH
Q 047623           46 AGETPRVVVITSGKGGVGKTTTTANVGLS   74 (340)
Q Consensus        46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~   74 (340)
                      ..++++++.+  +..|+||||+|..||..
T Consensus         3 ~~r~mrIili--G~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           3 SARLLRAAIM--GAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             SSCCCEEEEE--CCTTSSHHHHHHHHHHH
T ss_pred             CCcceeEEEE--CCCCCCHHHHHHHHHHH
Confidence            3567777765  88899999999998875

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=91.42  E-value=0.062  Score=43.77  Aligned_cols=31  Identities=16%  Similarity=0.160  Sum_probs=22.2

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEe
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAID   86 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD   86 (340)
                      |++|+++|+ =|+||||+|.-|+.   +.|.  ..+|
T Consensus         1 M~iIgiTG~-igSGKsTva~~l~e---~~g~--~~i~   31 (241)
T d1deka_           1 MKLIFLSGV-KRSGKDTTADFIMS---NYSA--VKYQ   31 (241)
T ss_dssp             CEEEEEECC-TTSSHHHHHHHHHH---HSCE--EECC
T ss_pred             CEEEEEECC-CCCCHHHHHHHHHH---hCCC--eEEc
Confidence            689999965 58999998866644   2354  4455

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.14  E-value=0.044  Score=44.39  Aligned_cols=40  Identities=13%  Similarity=0.091  Sum_probs=31.1

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHH------HCCCcEEEEecCCC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLA------RLGFSVVAIDADVG   90 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la------~~g~~VlliD~D~~   90 (340)
                      ++++.|. +-.|+|||+++.++|...+      ..|.+++.+|....
T Consensus        34 G~~~li~-G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~~   79 (251)
T d1szpa2          34 GSITELF-GEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT   79 (251)
T ss_dssp             SSEEEEE-ESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSSC
T ss_pred             CeEEEEE-cCCCCCHHHHHHHHHHHhhhhhhhccCCceEEEEeecch
Confidence            3455554 7889999999999987654      34778999999876

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.12  E-value=0.54  Score=35.49  Aligned_cols=66  Identities=15%  Similarity=0.016  Sum_probs=44.7

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCC-ChhhHHHHHHHHHHHHhcC-C--CceEEEEecccCC
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTP-DITSLRDADRVTGLLECDG-I--RDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~~-~--~~~~vviN~~~~~  231 (340)
                      .+++.|.|+++..  .......+..+|.++++.+. +..++..+..+.+.+.... .  ..+.+|.|+.+-.
T Consensus        47 ~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~  118 (168)
T d2gjsa1          47 EASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLV  118 (168)
T ss_dssp             EEEEEEEECC-------CHHHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCG
T ss_pred             ccceeeeecccccccceecccchhhhhhhceeccccccccccccccccchhhcccccccceEEEeecccchh
Confidence            4788999999854  33445667889998888764 5678888888887776532 2  2467888998854

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.61  E-value=0.15  Score=40.82  Aligned_cols=35  Identities=31%  Similarity=0.464  Sum_probs=30.6

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      +.++ +..|+|||.++..++..+.+++.+|+.+++.
T Consensus        39 l~l~-G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~   73 (213)
T d1l8qa2          39 IFIY-GSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD   73 (213)
T ss_dssp             EEEE-CSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred             EEEE-CCCCCcHHHHHHHHHHHhccCccceEEechH
Confidence            4444 8889999999999999999999999998775

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=90.60  E-value=0.13  Score=40.17  Aligned_cols=33  Identities=42%  Similarity=0.672  Sum_probs=24.3

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      .+.+|+++ +..|+||||+|-    .|.+.|++|  +++|
T Consensus         2 ~p~IIgit-G~~gSGKstva~----~l~~~g~~~--~~~D   34 (191)
T d1uf9a_           2 HPIIIGIT-GNIGSGKSTVAA----LLRSWGYPV--LDLD   34 (191)
T ss_dssp             CCEEEEEE-ECTTSCHHHHHH----HHHHTTCCE--EEHH
T ss_pred             CCEEEEEE-CCCCCCHHHHHH----HHHHCCCeE--EEcc
Confidence            34688888 667899999875    456789887  4554

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.51  E-value=0.081  Score=41.57  Aligned_cols=25  Identities=16%  Similarity=0.344  Sum_probs=20.3

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHH
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLS   74 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~   74 (340)
                      .+++|.+.| ..|+||||+|..||..
T Consensus         7 ~~~iI~l~G-~pGSGKsT~a~~La~~   31 (194)
T d3adka_           7 KSKIIFVVG-GPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             TSCEEEEEE-CTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEC-CCCCCHHHHHHHHHHH
Confidence            457888885 4899999999988774

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=90.40  E-value=0.093  Score=43.05  Aligned_cols=36  Identities=25%  Similarity=0.398  Sum_probs=31.7

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      ||+|.|+|+.+|.|+.     +|..|++.|.+|+++|.+..
T Consensus         1 mkVvlITGas~GIG~a-----iA~~la~~Ga~V~~~~~~~~   36 (257)
T d1fjha_           1 MSIIVISGCATGIGAA-----TRKVLEAAGHQIVGIDIRDA   36 (257)
T ss_dssp             CCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESSSS
T ss_pred             CCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEECChH
Confidence            6899999999999985     78889999999999997643

>d2vo1a1 c.37.1.10 (A:1-273) CTP synthase PyrG, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: CTP synthase PyrG, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.31  E-value=0.21  Score=41.04  Aligned_cols=41  Identities=27%  Similarity=0.401  Sum_probs=35.0

Q ss_pred             CEEEEEE-cCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           50 PRVVVIT-SGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        50 ~~iI~v~-s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      ||-|.|+ |--.|.||-.+|++++..|..+|++|-.+.+||.
T Consensus         1 mKyifVtGGV~S~lGKGi~~aSig~ll~~~g~~V~~~K~DPY   42 (273)
T d2vo1a1           1 MKYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPY   42 (273)
T ss_dssp             CEEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEEEEEECS
T ss_pred             CeEEEEeCCcccccchHHHHHHHHHHHHhCCceeEEEecccc
Confidence            3445555 4567999999999999999999999999999985

>d1vcoa2 c.37.1.10 (A:11-282) CTP synthase PyrG, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: CTP synthase PyrG, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=90.18  E-value=0.2  Score=41.15  Aligned_cols=40  Identities=33%  Similarity=0.389  Sum_probs=34.6

Q ss_pred             EEEEEE-cCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           51 RVVVIT-SGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        51 ~iI~v~-s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      |-|.|+ |--.|.||-.+|+++|..|..+|++|..+.+||.
T Consensus         3 kyifvtGGV~S~lGKGi~~asig~ll~~~g~~v~~~K~DpY   43 (272)
T d1vcoa2           3 KYVFITGGVVSSLGKGILTSSLGALLRARGYRVTAIKIDPY   43 (272)
T ss_dssp             EEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECS
T ss_pred             eEEEEeCCcccccccHHHHHHHHHHHHhCCCceeEEeeccc
Confidence            445554 4567999999999999999999999999999985

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=90.09  E-value=0.11  Score=41.21  Aligned_cols=27  Identities=30%  Similarity=0.437  Sum_probs=22.1

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHH
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLA   76 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la   76 (340)
                      +.++|+|. +-.|+||||.|..||..+.
T Consensus         2 ~~piI~I~-GppGSGKgT~ak~La~~~g   28 (225)
T d1ckea_           2 IAPVITID-GPSGAGKGTLCKAMAEALQ   28 (225)
T ss_dssp             CSCEEEEE-CCTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEE-CCCCCCHHHHHHHHHHHhC
Confidence            34588776 7789999999999998774

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=90.09  E-value=0.13  Score=40.01  Aligned_cols=25  Identities=28%  Similarity=0.440  Sum_probs=19.9

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHH
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSL   75 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~l   75 (340)
                      .+++|. . +-.|+||||+|..||..+
T Consensus         3 ~~riil-~-G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           3 GVRAVL-L-GPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             CCEEEE-E-CCTTSSHHHHHHHHHHHH
T ss_pred             ccEEEE-E-CCCCCCHHHHHHHHHHHh
Confidence            446664 4 888999999999999765

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.97  E-value=0.14  Score=39.58  Aligned_cols=25  Identities=36%  Similarity=0.550  Sum_probs=20.0

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHH
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSL   75 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~l   75 (340)
                      +++++.+  +-.|+||||+|..||..+
T Consensus         2 ~mrIvl~--G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           2 SIRMVLI--GPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             CCEEEEE--CCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEE--CCCCCCHHHHHHHHHHHh
Confidence            4566644  788999999999998865

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=89.78  E-value=0.13  Score=39.74  Aligned_cols=18  Identities=28%  Similarity=0.344  Sum_probs=16.4

Q ss_pred             CCCCCcHHHHHHHHHHHH
Q 047623           58 GKGGVGKTTTTANVGLSL   75 (340)
Q Consensus        58 ~kGGvGKTt~a~~LA~~l   75 (340)
                      +-.|+||||+|..||..+
T Consensus         7 G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           7 GLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             CSTTSSHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHH
Confidence            888999999999999876

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=89.75  E-value=0.23  Score=40.41  Aligned_cols=42  Identities=19%  Similarity=0.104  Sum_probs=30.9

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC-CCcEEEEecCCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARL-GFSVVAIDADVG   90 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~-g~~VlliD~D~~   90 (340)
                      .....+.+. +..|+|||+++..+|..+... +.++..+.+...
T Consensus        41 ~~~~~lll~-GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~   83 (276)
T d1fnna2          41 HHYPRATLL-GRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY   83 (276)
T ss_dssp             SSCCEEEEE-CCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC
T ss_pred             CCCCceEEE-CCCCCCHHHHHHHHHHHHhcccCCcEEEecchhh
Confidence            344556666 788999999999999998754 666766666544

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.65  E-value=0.14  Score=39.40  Aligned_cols=22  Identities=27%  Similarity=0.445  Sum_probs=17.7

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHH
Q 047623           53 VVITSGKGGVGKTTTTANVGLSL   75 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~l   75 (340)
                      |.+. +..|+||||+|..||..+
T Consensus         3 I~i~-G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           3 LVLM-GLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEE-CSTTSSHHHHHHHHHHHH
T ss_pred             EEEE-CCCCCCHHHHHHHHHHHH
Confidence            3444 788999999999988876

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=89.64  E-value=0.32  Score=40.38  Aligned_cols=43  Identities=16%  Similarity=0.309  Sum_probs=30.6

Q ss_pred             hhhHHHHHhhCCCCCCCCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC
Q 047623           30 KSSIQSVLQWNRKPELAGETPRVVVITSGKGGVGKTTTTANVGLSLARL   78 (340)
Q Consensus        30 ~~~~~~~l~~~~~~~~~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~   78 (340)
                      ..++.+.++.-.    ++....++.|  +..|||||+++..||..+.+.
T Consensus        24 d~Ei~~l~~iL~----r~~k~n~lLV--G~~GvGKTalv~~la~ri~~~   66 (268)
T d1r6bx2          24 EKELERAIQVLC----RRRKNNPLLV--GESGVGKTAIAEGLAWRIVQG   66 (268)
T ss_dssp             HHHHHHHHHHHT----SSSSCEEEEE--CCTTSSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh----cCccCCcEEE--CCCCCcHHHHHHHHHHHHHhC
Confidence            345555555543    2344566655  889999999999999999873

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=89.37  E-value=0.29  Score=33.30  Aligned_cols=34  Identities=24%  Similarity=0.253  Sum_probs=27.7

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      |.|+|.    |.|+|-.+  .|.+|+++|.+|.+.|....
T Consensus         6 K~v~Vi----GlG~sG~s--~a~~L~~~g~~v~~~D~~~~   39 (93)
T d2jfga1           6 KNVVII----GLGLTGLS--CVDFFLARGVTPRVMDTRMT   39 (93)
T ss_dssp             CCEEEE----CCSHHHHH--HHHHHHHTTCCCEEEESSSS
T ss_pred             CEEEEE----eECHHHHH--HHHHHHHCCCEEEEeeCCcC
Confidence            456777    77888776  58999999999999998665

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.37  E-value=0.13  Score=42.56  Aligned_cols=43  Identities=28%  Similarity=0.531  Sum_probs=35.1

Q ss_pred             CCCCCCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           42 KPELAGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        42 ~~~~~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      ||.|.+=..|++.|+|+.+|.|+.     +|..|++.|.+|.+.|-+.
T Consensus         2 ~~~M~~lk~Kv~lITGas~GIG~a-----iA~~la~~G~~Vv~~~r~~   44 (257)
T d1xg5a_           2 RPGMERWRDRLALVTGASGGIGAA-----VARALVQQGLKVVGCARTV   44 (257)
T ss_dssp             CTTCGGGTTCEEEEESTTSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred             cCCCCCCCCCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEECCH
Confidence            344555567999999999999984     7888999999999998764

>d2g0ta1 c.37.1.10 (A:1-338) Hypothetical protein TM0796 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein TM0796
species: Thermotoga maritima [TaxId: 2336]

Probab=89.20  E-value=3  Score=35.17  Aligned_cols=112  Identities=17%  Similarity=0.260  Sum_probs=71.0

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCchhccCCcCCCcccHHHhhcCCCccccceecccc
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNLDLLLGLENRVNYTVVEVLNGDCRLDQALVRDKR  127 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~  127 (340)
                      ..+++|++.|+--.+||=|+|..|...+.++|.++-++=....    ..+.+-+.  +.          .++.       
T Consensus       155 ~~~~rvl~vGTDca~GK~tTal~l~~~l~~~G~~a~fiaTGQT----Gili~g~~--Gv----------~~Da-------  211 (338)
T d2g0ta1         155 KKIKVVGVFGTDCVVGKRTTAVQLWERALEKGIKAGFLATGQT----GILIGADA--GY----------VIDA-------  211 (338)
T ss_dssp             CCSEEEEEEESSSSSSHHHHHHHHHHHHHHTTCCEEEEECSHH----HHHTTCSE--EC----------CGGG-------
T ss_pred             cCCcEEEEeccCccccHHHHHHHHHHHHHhCCCCeeEEEcCCe----eEeecccc--ce----------ecCc-------
Confidence            5679999999999999999999999999999999988855433    11111110  00          0000       


Q ss_pred             cCceeEeecCCCCCCCCCCcchhhHHHHHHHHHHhccCCCCEEEEcCCCCCCHH-----HHHHH--hcCCeEEEEeCCCh
Q 047623          128 WSNFELLCISKPRSKLPLGFGGKALTWVVEALKSRQEGSPDFILIDCPAGIDAG-----FITAI--TPANEAVLVTTPDI  200 (340)
Q Consensus       128 ~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~D~VIiD~~~~~~~~-----~~~~l--~~ad~viiv~~~~~  200 (340)
                                     ...++-...++.++-...+   ++.|+|||..-+++...     +...|  ...|.+|+.-.|..
T Consensus       212 ---------------v~~DfvaGavE~~v~~~~~---~~~d~iiIEGQgSL~hP~~s~vtl~LL~Gs~Pd~lVL~H~p~r  273 (338)
T d2g0ta1         212 ---------------VPADFVSGVVEKAVLKLEK---TGKEIVFVEGQGALRHPAYGQVTLGLLYGSNPDVVFLVHDPSR  273 (338)
T ss_dssp             ---------------SBGGGHHHHHHHHHHHHHH---TTCSEEEEECCSCTTCTTTHHHHHHHHHHHCCSEEEEECCTTC
T ss_pred             ---------------chhhhhHHHHHHHHhhhhc---CCCCEEEEcccccccccccccccHHHHhcCCCCEEEEeecCCc
Confidence                           0111223344444433322   36899999999976322     33444  46899999877753

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=88.55  E-value=0.23  Score=40.67  Aligned_cols=35  Identities=26%  Similarity=0.404  Sum_probs=27.1

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      ++-|.+. +-.|+|||++|..+|..   .|.++..+|+.
T Consensus        42 ~~giLl~-GppGtGKT~la~aia~~---~~~~~~~i~~~   76 (247)
T d1ixza_          42 PKGVLLV-GPPGVGKTHLARAVAGE---ARVPFITASGS   76 (247)
T ss_dssp             CSEEEEE-CCTTSSHHHHHHHHHHH---TTCCEEEEEHH
T ss_pred             CceEEEe-cCCCCChhHHHHHHHHH---cCCCEEEEEhH
Confidence            4456665 77899999999999964   57888888764

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.39  E-value=0.26  Score=39.74  Aligned_cols=42  Identities=19%  Similarity=0.203  Sum_probs=31.1

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC------CCcEEEEecCCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARL------GFSVVAIDADVG   90 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~------g~~VlliD~D~~   90 (340)
                      +.+.++.|. +..|+|||++|.++|...+..      +..|+.+|....
T Consensus        35 p~G~~~~i~-G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (258)
T d1v5wa_          35 ESMAITEAF-GEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT   82 (258)
T ss_dssp             CSSEEEEEE-CCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred             cCCEEEEEE-CCCCCCHHHHHHHHHHHHHhhhhcccccceEEEechHHH
Confidence            445566665 788999999999999876542      456888887765

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.37  E-value=0.19  Score=38.70  Aligned_cols=18  Identities=33%  Similarity=0.508  Sum_probs=16.5

Q ss_pred             CCCCCcHHHHHHHHHHHH
Q 047623           58 GKGGVGKTTTTANVGLSL   75 (340)
Q Consensus        58 ~kGGvGKTt~a~~LA~~l   75 (340)
                      +..|+||||+|..||..+
T Consensus         7 G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           7 GPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             CCTTSSHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHH
Confidence            888999999999999877

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.32  E-value=0.17  Score=39.05  Aligned_cols=25  Identities=32%  Similarity=0.441  Sum_probs=17.8

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHH
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGL   73 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~   73 (340)
                      +.+. +.++.+-.|+||||+|..++.
T Consensus        12 ~~p~-liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPE-VVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCC-EEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCE-EEEEECCCCCCHHHHHHHHHH
Confidence            3444 444558999999999987753

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.29  E-value=0.1  Score=41.02  Aligned_cols=29  Identities=14%  Similarity=0.084  Sum_probs=22.8

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLG   79 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g   79 (340)
                      +.++.|. +-.|+|||+++.++|...+..+
T Consensus        23 G~v~~i~-G~~GsGKT~l~l~la~~~~~~~   51 (242)
T d1n0wa_          23 GSITEMF-GEFRTGKTQICHTLAVTCQLPI   51 (242)
T ss_dssp             TSEEEEE-CCTTSSHHHHHHHHHHHTTSCG
T ss_pred             CEEEEEE-eCCCCCHHHHHHHHHHHHHHhh
Confidence            3455554 8889999999999999887653

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.24  E-value=0.69  Score=34.60  Aligned_cols=66  Identities=20%  Similarity=0.129  Sum_probs=46.4

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCC-ChhhHHHHHHHHHHHHhc-CCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTP-DITSLRDADRVTGLLECD-GIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~-~~~~~~vviN~~~~~  231 (340)
                      .+.+.+.|+++..  .......+..+|.++++... +..++..+...++.+.+. +-..+.+|.|+++..
T Consensus        50 ~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~iilVgnK~Dl~  119 (164)
T d1z2aa1          50 DVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLL  119 (164)
T ss_dssp             EEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGG
T ss_pred             eeeeeeeccCCccchhhhhhhhhccCceEEEEEeccchhhhhhcccccccccccCCCceEEEeeccCCcc
Confidence            3778899998743  23345567889998888877 567788887777777543 334566788999854

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.85  E-value=0.63  Score=35.06  Aligned_cols=66  Identities=9%  Similarity=-0.024  Sum_probs=43.3

Q ss_pred             CCEEEEcCCCCCCH--HHHHHHhcCCeEEEEeCCC-hhhHHHHHHHHHHHHhcCC--CceEEEEecccCCc
Q 047623          167 PDFILIDCPAGIDA--GFITAITPANEAVLVTTPD-ITSLRDADRVTGLLECDGI--RDIKMVVNRVRTDM  232 (340)
Q Consensus       167 ~D~VIiD~~~~~~~--~~~~~l~~ad~viiv~~~~-~~s~~~~~~~~~~l~~~~~--~~~~vviN~~~~~~  232 (340)
                      +.+.+.|+|+....  .....+..||.+|++.... ..++.......+.+.....  ..+.+|.|+.+...
T Consensus        54 ~~l~~wDt~G~e~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~  124 (169)
T d3raba_          54 IKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED  124 (169)
T ss_dssp             EEEEEEEECCSGGGHHHHHTTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGG
T ss_pred             EEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeeccccc
Confidence            67789999986432  2233467799888888664 5566666666665554332  35667779998643

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.65  E-value=0.21  Score=40.67  Aligned_cols=37  Identities=32%  Similarity=0.378  Sum_probs=32.6

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      ++|++.|+|+.+|.|+.     +|..|++.|.+|.++|-+..
T Consensus         4 kGKvalITGas~GIG~a-----ia~~la~~G~~V~~~~r~~~   40 (248)
T d2o23a1           4 KGLVAVITGGASGLGLA-----TAERLVGQGASAVLLDLPNS   40 (248)
T ss_dssp             TTCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEECTTS
T ss_pred             CCCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEeCChH
Confidence            46899999999999985     78899999999999998754

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.61  E-value=0.28  Score=35.35  Aligned_cols=38  Identities=8%  Similarity=0.064  Sum_probs=31.1

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHC--CCcEEEEecC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARL--GFSVVAIDAD   88 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~--g~~VlliD~D   88 (340)
                      +-+|.++ +-.|+||||+|..|-..|-+.  |.+|-++|-|
T Consensus         6 gf~i~~t-g~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~   45 (122)
T d1g8fa3           6 GFSIVLG-NSLTVSREQLSIALLSTFLQFGGGRYYKIFEHN   45 (122)
T ss_dssp             CEEEEEC-TTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCT
T ss_pred             ceEEEEe-CCCCCCHHHHHHHHHHHHHHhcCCcceEEecCC
Confidence            3455555 677899999999999999884  6899999887

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.59  E-value=0.58  Score=35.32  Aligned_cols=66  Identities=14%  Similarity=-0.051  Sum_probs=45.5

Q ss_pred             CCCEEEEcCCCCCCH--HHHHHHhcCCeEEEEeCC-ChhhHHHHHHHHHHHHhcCC--CceEEEEecccCC
Q 047623          166 SPDFILIDCPAGIDA--GFITAITPANEAVLVTTP-DITSLRDADRVTGLLECDGI--RDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~~--~~~~~l~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~~~--~~~~vviN~~~~~  231 (340)
                      .+.+.|+|+++....  .....+..+|.++++... +..++....+....+.....  ..+.+|.|+.+..
T Consensus        53 ~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~  123 (171)
T d2ew1a1          53 KVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLA  123 (171)
T ss_dssp             EEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGG
T ss_pred             EEEEEEEECCCchhhHHHHHHHHhccceEEEeeecccchhhhhhhhhhhhhcccccccccEEEEEeecccc
Confidence            378889999986432  223345678988888864 57788888888777765332  3566778998754

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=87.56  E-value=0.24  Score=41.44  Aligned_cols=36  Identities=31%  Similarity=0.440  Sum_probs=31.6

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      .+|++.|+|+.+|.|+.     +|..|++.|.+|.++|-+.
T Consensus        24 ~gK~alITGas~GIG~a-----iA~~la~~Ga~Vii~~r~~   59 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKG-----MTTLLSSLGAQCVIASRKM   59 (294)
T ss_dssp             TTCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeCCCCHHHHH-----HHHHHHHcCCEEEEEECCH
Confidence            34999999999999985     7888999999999999764

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.54  E-value=0.2  Score=40.96  Aligned_cols=36  Identities=28%  Similarity=0.434  Sum_probs=31.7

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      .+|++.|+|+.+|.|+.     +|..|+++|.+|++.|-+.
T Consensus         6 ~Gkv~lITGas~GIG~~-----ia~~la~~G~~V~l~~r~~   41 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRL-----TAYEFAKLKSKLVLWDINK   41 (244)
T ss_dssp             TTCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeCCCcHHHHH-----HHHHHHHCCCEEEEEECCH
Confidence            46899999999999985     7888999999999998764

>d1s1ma2 c.37.1.10 (A:1-266) CTP synthase PyrG, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: CTP synthase PyrG, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.38  E-value=0.41  Score=39.04  Aligned_cols=40  Identities=20%  Similarity=0.267  Sum_probs=34.6

Q ss_pred             EEEEEE-cCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           51 RVVVIT-SGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        51 ~iI~v~-s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      |-|.|+ |--.|.||-.+|++++..|..+|++|..+.+||.
T Consensus         4 kyifvtGGV~S~lGKGi~~aSig~llk~~g~~V~~~K~DPY   44 (266)
T d1s1ma2           4 NYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPY   44 (266)
T ss_dssp             EEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECC
T ss_pred             eEEEEeCCcccccchHHHHHHHHHHHHhCCceeEEEecccc
Confidence            445555 4468999999999999999999999999999985

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.36  E-value=0.21  Score=41.07  Aligned_cols=37  Identities=22%  Similarity=0.390  Sum_probs=32.3

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      .+|++.|+|+.+|.|+.     +|..|+++|.+|.+.|-+..
T Consensus         2 ~GKvalITGas~GIG~a-----ia~~la~~Ga~V~i~~r~~~   38 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRA-----FAEALLLKGAKVALVDWNLE   38 (254)
T ss_dssp             TTCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEECCHH
Confidence            36899999999999996     78899999999999987653

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=87.34  E-value=0.23  Score=40.66  Aligned_cols=37  Identities=27%  Similarity=0.432  Sum_probs=32.3

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      .+|++.|+|+.+|.|+.     +|..|++.|.+|.+.|.+..
T Consensus         4 ~GK~alITGas~GIG~a-----ia~~la~~G~~V~~~~~~~~   40 (248)
T d2d1ya1           4 AGKGVLVTGGARGIGRA-----IAQAFAREGALVALCDLRPE   40 (248)
T ss_dssp             TTCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESSTT
T ss_pred             CCCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEECCHH
Confidence            46899999999999985     78899999999999997743

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=87.05  E-value=0.3  Score=43.18  Aligned_cols=35  Identities=20%  Similarity=0.364  Sum_probs=29.5

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      +.|+ +..|+|||++..++...+.++|..++++|..
T Consensus        53 ~~I~-G~tGsGKT~~l~~li~~~~~~g~~~iiiD~k   87 (433)
T d1e9ra_          53 LLVN-GATGTGKSVLLRELAYTGLLRGDRMVIVDPN   87 (433)
T ss_dssp             EEEE-ECTTSSHHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred             EEEE-eCCCCcHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence            4555 6778899999989998888999999999865

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.69  E-value=0.25  Score=40.05  Aligned_cols=36  Identities=22%  Similarity=0.362  Sum_probs=31.6

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      +|+|.|+|+.+|.|+.     +|..|+++|.+|.++|.+..
T Consensus         2 gK~vlITGas~GIG~a-----~a~~l~~~G~~V~~~~~~~~   37 (236)
T d1dhra_           2 ARRVLVYGGRGALGSR-----CVQAFRARNWWVASIDVVEN   37 (236)
T ss_dssp             CCEEEEETTTSHHHHH-----HHHHHHTTTCEEEEEESSCC
T ss_pred             CCEEEEECCCCHHHHH-----HHHHHHHCCCEEEEEeCCcc
Confidence            5899999999999985     77889999999999997654

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=86.44  E-value=0.37  Score=42.25  Aligned_cols=54  Identities=24%  Similarity=0.356  Sum_probs=36.0

Q ss_pred             ChhhHHHHHhhCCCCCCCCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC-------CCcEEEEecC
Q 047623           29 SKSSIQSVLQWNRKPELAGETPRVVVITSGKGGVGKTTTTANVGLSLARL-------GFSVVAIDAD   88 (340)
Q Consensus        29 ~~~~~~~~l~~~~~~~~~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~-------g~~VlliD~D   88 (340)
                      ...++++.++.-.    ++...+.|.|  +..|||||+++-.||..+...       ++++.-+|+.
T Consensus        27 r~~ei~~~~~~L~----r~~k~n~llv--G~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~   87 (387)
T d1qvra2          27 RDEEIRRVIQILL----RRTKNNPVLI--GEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMG   87 (387)
T ss_dssp             CHHHHHHHHHHHH----CSSCCCCEEE--ECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-
T ss_pred             cHHHHHHHHHHHh----cCCCCCCeEE--CCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHh
Confidence            3345666666533    2344456666  677999999999999998863       4566666554

>d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: Folylpolyglutamate synthetase
domain: Folylpolyglutamate synthetase
species: Lactobacillus casei [TaxId: 1582]

Probab=86.41  E-value=0.39  Score=40.32  Aligned_cols=50  Identities=18%  Similarity=0.212  Sum_probs=38.4

Q ss_pred             hhHHHHHhhCCCCCCCCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEe
Q 047623           31 SSIQSVLQWNRKPELAGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAID   86 (340)
Q Consensus        31 ~~~~~~l~~~~~~~~~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD   86 (340)
                      ..+++.++.--.   +.+..++|.|+|   =-||||++.-++..|.+.|++|.++-
T Consensus        23 ~r~~~~l~~lg~---P~~~lkvI~VTG---TNGKtST~~~i~~IL~~~G~kvG~~t   72 (296)
T d2gc6a2          23 RRILTLLHALGN---PQQQGRYIHVTG---TNGKGSAANAIAHVLEASGLTVGLYT   72 (296)
T ss_dssp             HHHHHHHHHTTC---GGGSSCEEEEEC---SSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             HHHHHHHHHcCC---chhhCCEEEEec---cCcHHHHHHHHHHHHHhcCCceeeee
Confidence            445555555332   345578999995   55899999999999999999999873

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=86.36  E-value=0.26  Score=40.46  Aligned_cols=36  Identities=33%  Similarity=0.518  Sum_probs=31.4

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      .|++.|+|+.+|.|+.     +|..|++.|.+|++.|-+..
T Consensus         5 gK~~lITGas~GIG~a-----ia~~la~~Ga~V~i~~r~~~   40 (251)
T d1vl8a_           5 GRVALVTGGSRGLGFG-----IAQGLAEAGCSVVVASRNLE   40 (251)
T ss_dssp             TCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESCHH
T ss_pred             CCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEECCHH
Confidence            5899999999999985     78899999999999987643

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.95  E-value=0.16  Score=40.65  Aligned_cols=30  Identities=23%  Similarity=0.224  Sum_probs=23.9

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLG   79 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g   79 (340)
                      +++.|+|- +--|+||||.+..|+..|..++
T Consensus         2 kGk~I~iE-G~DGsGKST~~~~L~~~L~~~~   31 (214)
T d1tmka_           2 RGKLILIE-GLDRTGKTTQCNILYKKLQPNC   31 (214)
T ss_dssp             CCCEEEEE-ESTTSSHHHHHHHHHHHTTTSE
T ss_pred             CeEEEEEE-CCCCCcHHHHHHHHHHHHHhCC
Confidence            56788887 5557999999999999887543

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=85.89  E-value=0.29  Score=40.27  Aligned_cols=37  Identities=22%  Similarity=0.416  Sum_probs=32.8

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      +.|++.|+|+.+|.|+.     +|..|++.|.+|.+.|-+..
T Consensus         8 ~gK~alITGas~GIG~a-----ia~~la~~Ga~V~i~~r~~~   44 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLA-----FTRAVAAAGANVAVIYRSAA   44 (260)
T ss_dssp             TTEEEEEETTTSHHHHH-----HHHHHHHTTEEEEEEESSCT
T ss_pred             CCCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEECCHH
Confidence            46999999999999985     78899999999999998764

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=85.87  E-value=0.27  Score=37.71  Aligned_cols=23  Identities=22%  Similarity=0.265  Sum_probs=17.7

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHH
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSL   75 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~l   75 (340)
                      +|+. . +..|+||||.|..||..+
T Consensus         2 ~I~i-~-G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           2 RIIL-L-GAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EEEE-E-ESTTSSHHHHHHHHHHHH
T ss_pred             EEEE-E-CCCCCCHHHHHHHHHHHh
Confidence            4444 3 677999999999998765

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.78  E-value=2.3  Score=31.45  Aligned_cols=66  Identities=11%  Similarity=-0.056  Sum_probs=46.6

Q ss_pred             CCCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCC-ChhhHHHHHHHHHHHHhcCC--CceEEEEecccCC
Q 047623          166 SPDFILIDCPAGI--DAGFITAITPANEAVLVTTP-DITSLRDADRVTGLLECDGI--RDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~~~--~~~~vviN~~~~~  231 (340)
                      .+.+.|.|+++..  .......+..+|.++++... +..+...+....+.+.....  ..+.++.|+.+-.
T Consensus        52 ~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~  122 (166)
T d1z0fa1          52 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLE  122 (166)
T ss_dssp             EEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCG
T ss_pred             EEEEEEeccCCchhHHHHHHHHhcCCcEEEEEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccch
Confidence            3678899999843  44555667889998888875 56677777777777765433  3566777888754

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=85.77  E-value=0.23  Score=38.56  Aligned_cols=22  Identities=27%  Similarity=0.351  Sum_probs=17.4

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHH
Q 047623           53 VVITSGKGGVGKTTTTANVGLSL   75 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~l   75 (340)
                      |.+. +..|+||||+|..||..+
T Consensus         6 I~i~-GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           6 VMIS-GAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             EEEE-ESTTSSHHHHHHHHHHHH
T ss_pred             EEEE-CCCCCCHHHHHHHHHHHH
Confidence            4455 666999999999888776

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=85.41  E-value=2.4  Score=36.90  Aligned_cols=35  Identities=23%  Similarity=0.345  Sum_probs=26.5

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEe
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAID   86 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD   86 (340)
                      ..|.|+ +--|+||||+...+-..+.+.+++++-|+
T Consensus       159 GliLvt-GpTGSGKSTTl~~~l~~~~~~~~~i~tiE  193 (401)
T d1p9ra_         159 GIILVT-GPTGSGKSTTLYAGLQELNSSERNILTVE  193 (401)
T ss_dssp             EEEEEE-CSTTSCHHHHHHHHHHHHCCTTSCEEEEE
T ss_pred             ceEEEE-cCCCCCccHHHHHHhhhhcCCCceEEEec
Confidence            455555 67788999999998887765566777776

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=85.35  E-value=0.33  Score=37.89  Aligned_cols=37  Identities=27%  Similarity=0.323  Sum_probs=32.2

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      ..|++.|+|+.||+|+.     +|..|+++|.+|.+++-+..
T Consensus        22 ~gK~vlItGasgGIG~~-----ia~~la~~G~~V~~~~r~~~   58 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMR-----SAALLAGEGAEVVLCGRKLD   58 (191)
T ss_dssp             TTCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESSHH
T ss_pred             CCCEEEEECCCHHHHHH-----HHHHHHhhccchhhcccchH
Confidence            45899999999999984     78899999999999988754

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.34  E-value=0.31  Score=39.75  Aligned_cols=36  Identities=28%  Similarity=0.385  Sum_probs=31.5

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      .+|++.|+|+.+|.|+.     +|..|++.|.+|+++|-+.
T Consensus         6 ~GK~~lITGas~GIG~a-----ia~~la~~G~~V~~~~r~~   41 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRG-----TVQALHATGARVVAVSRTQ   41 (244)
T ss_dssp             TTCEEEEESTTSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeCCCCHHHHH-----HHHHHHHcCCEEEEEECCH
Confidence            45899999999999985     7899999999999998653

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=85.15  E-value=0.37  Score=39.35  Aligned_cols=28  Identities=21%  Similarity=0.255  Sum_probs=22.6

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHH
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLAR   77 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~   77 (340)
                      ...+.+..+..|+|||+++..++..|.+
T Consensus        45 ~~~~l~l~GppGtGKT~l~~~l~~~l~~   72 (287)
T d1w5sa2          45 VNMIYGSIGRVGIGKTTLAKFTVKRVSE   72 (287)
T ss_dssp             EEEEEECTTCCSSSHHHHHHHHHHHHHH
T ss_pred             cceEEEeECCCCCCHHHHHHHHHHHHHh
Confidence            3445556688999999999999999865

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=85.03  E-value=1.1  Score=37.82  Aligned_cols=47  Identities=26%  Similarity=0.440  Sum_probs=32.7

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCC--CCchhccCC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGL--RNLDLLLGL  100 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~--~~l~~~~~~  100 (340)
                      ..++.++ +-.|||||.+|..||..+   +.+.+-+|+-.-.  +..+.+.|-
T Consensus        52 ~~~~lf~-Gp~GvGKT~lak~la~~l---~~~~i~~d~s~~~~~~~~~~l~g~  100 (315)
T d1r6bx3          52 VGSFLFA-GPTGVGKTEVTVQLSKAL---GIELLRFDMSEYMERHTVSRLIGA  100 (315)
T ss_dssp             SEEEEEE-CSTTSSHHHHHHHHHHHH---TCEEEEEEGGGCSSSSCCSSSCCC
T ss_pred             ceEEEEE-CCCcchhHHHHHHHHhhc---cCCeeEeccccccchhhhhhhccc
Confidence            3456666 778999999999999987   4578888876431  233445544

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=84.78  E-value=0.19  Score=39.21  Aligned_cols=28  Identities=36%  Similarity=0.408  Sum_probs=20.6

Q ss_pred             CCCCEEEEEEcCCCCCcHHHHHHHHHHHH
Q 047623           47 GETPRVVVITSGKGGVGKTTTTANVGLSL   75 (340)
Q Consensus        47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~l   75 (340)
                      .+.+.+|+|- |--|+||||++-.|+..+
T Consensus         6 ~~kp~~I~ie-G~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1           6 GTQPFTVLIE-GNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             TCCCEEEEEE-CSTTSCHHHHHHTTGGGT
T ss_pred             CCCceEEEEE-CCCCCCHHHHHHHHHHHh
Confidence            3445577766 777999999888877654

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=84.72  E-value=0.39  Score=36.35  Aligned_cols=25  Identities=40%  Similarity=0.595  Sum_probs=20.4

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHC
Q 047623           53 VVITSGKGGVGKTTTTANVGLSLARL   78 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~la~~   78 (340)
                      |+++ +..|+||||++..++..+...
T Consensus         3 i~I~-G~~G~GKSTLl~~i~~~l~~~   27 (178)
T d1ye8a1           3 IIIT-GEPGVGKTTLVKKIVERLGKR   27 (178)
T ss_dssp             EEEE-CCTTSSHHHHHHHHHHHHGGG
T ss_pred             EEEE-CCCCcHHHHHHHHHHhcCCCC
Confidence            4555 677899999999999988754

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=84.49  E-value=0.33  Score=37.29  Aligned_cols=66  Identities=17%  Similarity=0.200  Sum_probs=47.9

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCCChhhHHHHHHHHHHHHhcCCCceEEEEecccCCc
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTPDITSLRDADRVTGLLECDGIRDIKMVVNRVRTDM  232 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~vviN~~~~~~  232 (340)
                      ++.+.++|+++...  ......+..+|.+++++.....-.....++...+...+.+ +.+++|+++...
T Consensus        58 ~~~~~~~d~~g~~~~~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~~~~p-~iiv~NKiD~~~  125 (179)
T d1wb1a4          58 NYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIP-IIVVITKSDNAG  125 (179)
T ss_dssp             TEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCC-BCEEEECTTSSC
T ss_pred             CccccccccccccccccchhhhhhhccccccccccccccchhhhhhhhhhhhcCCc-ceeccccccccC
Confidence            46678888887543  2234566789999999888766566667777777777776 668899998643

>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

Probab=84.19  E-value=0.41  Score=37.47  Aligned_cols=32  Identities=28%  Similarity=0.393  Sum_probs=27.8

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEE
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVA   84 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vll   84 (340)
                      .|+|+|+|   --||||++.-++..|.+.|.+|.+
T Consensus         2 ~kvI~VTG---TnGKTTt~~mi~~iL~~~g~~~~~   33 (214)
T d1gg4a4           2 ARVVALTG---SSGKTSVKEMTAAILSQCGNTLYT   33 (214)
T ss_dssp             CEEEEEEC---SSCHHHHHHHHHHHHTTTSCEEEC
T ss_pred             CCEEEEeC---CCcHHHHHHHHHHHHHhCCCCEEE
Confidence            48999996   458999999999999999988765

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=83.97  E-value=0.29  Score=37.49  Aligned_cols=33  Identities=33%  Similarity=0.537  Sum_probs=25.5

Q ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           53 VVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        53 I~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      |+|+++-|+.|+     .||..|++.|++|.+.+-|+.
T Consensus         3 i~vigGaG~iG~-----alA~~la~~G~~V~l~~R~~e   35 (212)
T d1jaya_           3 VALLGGTGNLGK-----GLALRLATLGHEIVVGSRREE   35 (212)
T ss_dssp             EEEETTTSHHHH-----HHHHHHHTTTCEEEEEESSHH
T ss_pred             EEEEeCCcHHHH-----HHHHHHHHCCCEEEEEECCHH
Confidence            567755555555     599999999999999987753

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=83.94  E-value=3  Score=30.99  Aligned_cols=66  Identities=9%  Similarity=-0.020  Sum_probs=45.0

Q ss_pred             CCCEEEEcCCCCCCH--HHHHHHhcCCeEEEEeCC-ChhhHHHHHHHHHHHHhc-C--CCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGIDA--GFITAITPANEAVLVTTP-DITSLRDADRVTGLLECD-G--IRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~~--~~~~~l~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~-~--~~~~~vviN~~~~~  231 (340)
                      .+.+.+.|+++....  .....+..+|.++++... +..+...+...++.+.+. .  ...+.+|.|+.+-.
T Consensus        51 ~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~  122 (168)
T d1u8za_          51 EVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE  122 (168)
T ss_dssp             EEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGG
T ss_pred             cccccccccccccchhhhhhhcccccceeEEEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEecccccc
Confidence            478889999986532  234456789998888876 577888888777777543 1  22467888998753

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.87  E-value=0.13  Score=41.39  Aligned_cols=30  Identities=17%  Similarity=0.112  Sum_probs=24.1

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLG   79 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g   79 (340)
                      ++|.|+|- |--|+||||++..|+..|...+
T Consensus         1 ~~k~I~ie-G~dGsGKST~~~~L~~~l~~~~   30 (241)
T d1p5zb_           1 RIKKISIE-GNIAAGKSTFVNILKQLCEDWE   30 (241)
T ss_dssp             CCEEEEEE-CSTTSSHHHHHTTTGGGCTTEE
T ss_pred             CCCEEEEE-CCCCCCHHHHHHHHHHHHhcCC
Confidence            36888888 6678999999999999875433

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=83.71  E-value=0.52  Score=38.38  Aligned_cols=37  Identities=24%  Similarity=0.419  Sum_probs=32.2

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      ..|++.|+|+.+|.|+.     +|..|++.|.+|.+.|.+..
T Consensus         4 ~gKvalVTGas~GIG~a-----ia~~la~~Ga~V~~~~~~~~   40 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRA-----IAERFAVEGADIAIADLVPA   40 (247)
T ss_dssp             TTCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESSCC
T ss_pred             CCCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEECCch
Confidence            45899999999999985     78899999999999987653

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=83.69  E-value=0.36  Score=38.76  Aligned_cols=36  Identities=31%  Similarity=0.558  Sum_probs=31.8

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGL   91 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~   91 (340)
                      |++.|+|+.+|.|+.     +|..|++.|.+|.+.|.+...
T Consensus         2 K~alITGas~GIG~a-----iA~~la~~Ga~V~i~~~~~~~   37 (241)
T d1uaya_           2 RSALVTGGASGLGRA-----AALALKARGYRVVVLDLRREG   37 (241)
T ss_dssp             CEEEEETTTSHHHHH-----HHHHHHHHTCEEEEEESSCCS
T ss_pred             CEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEECCccc
Confidence            688999999999985     788999999999999988763

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=83.65  E-value=0.4  Score=39.37  Aligned_cols=37  Identities=35%  Similarity=0.558  Sum_probs=32.0

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      ..|++.|+|+.+|.|+.     +|..|++.|.+|.+.|.+..
T Consensus         3 ~gK~alITGas~GIG~a-----ia~~la~~Ga~V~i~~r~~~   39 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRA-----TAVRLAAEGAKLSLVDVSSE   39 (258)
T ss_dssp             TTCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESCHH
T ss_pred             CCCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEECCHH
Confidence            35899999999999985     68889999999999997653

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.51  E-value=1.1  Score=33.77  Aligned_cols=67  Identities=10%  Similarity=-0.018  Sum_probs=40.6

Q ss_pred             CCCEEEEcCCCCCC--HHHHHHHhcCCeEEEEeCC-ChhhHHHHHHHHHHHHhcCC--CceEEEEecccCCc
Q 047623          166 SPDFILIDCPAGID--AGFITAITPANEAVLVTTP-DITSLRDADRVTGLLECDGI--RDIKMVVNRVRTDM  232 (340)
Q Consensus       166 ~~D~VIiD~~~~~~--~~~~~~l~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~~~--~~~~vviN~~~~~~  232 (340)
                      .+.+-|+|+|+...  ......+..+|.++++... +..+...+....+.+.....  ..+.+|.|+.+...
T Consensus        54 ~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~  125 (173)
T d2fu5c1          54 RIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND  125 (173)
T ss_dssp             EEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCS
T ss_pred             EEEEEEEECCCchhhHHHHHHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchh
Confidence            36778899988432  2223346779999988875 46677788777777764333  45667889887654

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=83.47  E-value=0.4  Score=38.62  Aligned_cols=29  Identities=34%  Similarity=0.285  Sum_probs=24.9

Q ss_pred             CCCCCcHHHHHHHHHHHHHHCCCcEEEEe
Q 047623           58 GKGGVGKTTTTANVGLSLARLGFSVVAID   86 (340)
Q Consensus        58 ~kGGvGKTt~a~~LA~~la~~g~~VlliD   86 (340)
                      ..-|.|||+++...+..++++|.+|+++-
T Consensus        65 apTGsGKT~~~~~~~~~~~~~~~rvliv~   93 (237)
T d1gkub1          65 APTGVGKTSFGLAMSLFLALKGKRCYVIF   93 (237)
T ss_dssp             CCBTSCSHHHHHHHHHHHHTTSCCEEEEE
T ss_pred             ecCCChHHHHHHHHHHHHHHhcCeEEEEe
Confidence            67799999998888888888899998874

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.44  E-value=0.42  Score=38.93  Aligned_cols=36  Identities=25%  Similarity=0.275  Sum_probs=31.5

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      .+|++.|+|+.+|.|+.     +|..|++.|.+|.+.|.+.
T Consensus         5 ~gK~alITGas~GIG~a-----ia~~la~~G~~V~~~~r~~   40 (244)
T d1nffa_           5 TGKVALVSGGARGMGAS-----HVRAMVAEGAKVVFGDILD   40 (244)
T ss_dssp             TTCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEECCH
Confidence            46899999999999985     7788999999999998764

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=83.31  E-value=0.42  Score=39.25  Aligned_cols=36  Identities=25%  Similarity=0.466  Sum_probs=31.6

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      .+|++.|+|+.+|.|+.     +|..|++.|.+|.+.|.+.
T Consensus         4 ~gK~alITGas~GIG~a-----ia~~la~~Ga~V~~~~r~~   39 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLA-----TALRLAEEGTAIALLDMNR   39 (260)
T ss_dssp             TTCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEECCH
Confidence            46899999999999984     7888999999999998764

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.28  E-value=0.35  Score=39.97  Aligned_cols=36  Identities=25%  Similarity=0.486  Sum_probs=31.3

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      .+|++.|+|+.+|.|+.     +|..|+++|.+|.+++-+.
T Consensus        13 ~GK~alITGassGIG~a-----iA~~la~~G~~Vil~~r~~   48 (269)
T d1xu9a_          13 QGKKVIVTGASKGIGRE-----MAYHLAKMGAHVVVTARSK   48 (269)
T ss_dssp             TTCEEEESSCSSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeCCCcHHHHH-----HHHHHHHCCCEEEEEECCH
Confidence            35899999999999985     7889999999999998764

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=83.13  E-value=0.36  Score=39.26  Aligned_cols=36  Identities=19%  Similarity=0.434  Sum_probs=31.4

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      .+|++.|+|+.+|.|+.     +|..|++.|.+|.+.|-+.
T Consensus         3 ~gK~alITGas~GIG~a-----~a~~l~~~G~~Vv~~~r~~   38 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRA-----IAETLAARGAKVIGTATSE   38 (243)
T ss_dssp             TTCEEEESSCSSHHHHH-----HHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEeCCCCHHHHH-----HHHHHHHcCCEEEEEeCCH
Confidence            36899999999999985     7888999999999988764

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=83.02  E-value=0.45  Score=38.68  Aligned_cols=35  Identities=29%  Similarity=0.409  Sum_probs=31.0

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      .|++.|+|+.+|.|+.     +|..|++.|.+|.+.|-+.
T Consensus         5 gK~~lITGas~GIG~a-----ia~~l~~~G~~V~~~~r~~   39 (242)
T d1ulsa_           5 DKAVLITGAAHGIGRA-----TLELFAKEGARLVACDIEE   39 (242)
T ss_dssp             TCEEEEESTTSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEECCH
Confidence            5899999999999985     7889999999999998763

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=82.97  E-value=0.43  Score=39.12  Aligned_cols=36  Identities=22%  Similarity=0.402  Sum_probs=31.4

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      ..|++.|+|+.+|.|+.     +|..|++.|.+|.+.|-+.
T Consensus         4 ~gK~alVTGas~GIG~a-----ia~~la~~Ga~V~~~~r~~   39 (256)
T d1k2wa_           4 DGKTALITGSARGIGRA-----FAEAYVREGARVAIADINL   39 (256)
T ss_dssp             TTEEEEEETCSSHHHHH-----HHHHHHHTTEEEEEEESCH
T ss_pred             CCCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEECCH
Confidence            45999999999999984     7889999999999998653

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=82.85  E-value=0.63  Score=37.61  Aligned_cols=36  Identities=14%  Similarity=0.111  Sum_probs=26.2

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      +.+.|. +.+|+|||+++..++..   .+.....+++...
T Consensus        30 ~~i~i~-G~~G~GKTsLl~~~~~~---~~~~~~~i~~~~~   65 (283)
T d2fnaa2          30 PITLVL-GLRRTGKSSIIKIGINE---LNLPYIYLDLRKF   65 (283)
T ss_dssp             SEEEEE-ESTTSSHHHHHHHHHHH---HTCCEEEEEGGGG
T ss_pred             CEEEEE-cCCCCcHHHHHHHHHHH---CCCCeEEEEeccc
Confidence            456665 78899999999876544   3667788887543

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.84  E-value=0.4  Score=38.86  Aligned_cols=37  Identities=30%  Similarity=0.498  Sum_probs=32.4

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      ++|++.|+|+.+|.|+.     +|..|++.|.+|.+.|-+..
T Consensus         6 ~gK~~lITGas~GIG~a-----ia~~la~~Ga~V~~~~r~~~   42 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLA-----IAQRLAADGHKVAVTHRGSG   42 (237)
T ss_dssp             CCCEEEETTTTSHHHHH-----HHHHHHHTTCEEEEEESSSC
T ss_pred             CCCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEECCcc
Confidence            56899999999999984     78889999999999998754

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=82.82  E-value=0.32  Score=41.12  Aligned_cols=37  Identities=35%  Similarity=0.504  Sum_probs=32.7

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      .+|++.|+|+.+|.|+.     +|..|+++|.+|.+.|.+..
T Consensus         6 ~gKvalITGas~GIG~a-----iA~~la~~Ga~Vvi~d~~~~   42 (302)
T d1gz6a_           6 DGRVVLVTGAGGGLGRA-----YALAFAERGALVVVNDLGGD   42 (302)
T ss_dssp             TTCEEEETTTTSHHHHH-----HHHHHHHTTCEEEEECCCBC
T ss_pred             CCCEEEEeCCCCHHHHH-----HHHHHHHcCCEEEEEeCCch
Confidence            46899999999999985     78899999999999988764

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.82  E-value=0.47  Score=38.79  Aligned_cols=35  Identities=34%  Similarity=0.517  Sum_probs=31.1

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDAD   88 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D   88 (340)
                      .+|++.|+|+.+|.|+.     +|..|++.|.+|.+.|-+
T Consensus         5 ~GK~alITGas~GIG~a-----ia~~la~~Ga~V~i~~r~   39 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAG-----IVRAFVNSGARVVICDKD   39 (250)
T ss_dssp             TTCEEEEETCSSHHHHH-----HHHHHHHTTCEEEEEESC
T ss_pred             CCCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEECC
Confidence            56899999999999985     788999999999999865

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=82.80  E-value=0.47  Score=38.26  Aligned_cols=36  Identities=19%  Similarity=0.315  Sum_probs=31.2

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      ..|++.|+|+.+|.|+.     +|..|++.|.+|.+.|-+.
T Consensus         3 kgK~~lVTGas~GIG~a-----ia~~l~~~Ga~V~~~~r~~   38 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRA-----VADVLSQEGAEVTICARNE   38 (234)
T ss_dssp             TTCEEEEESCSSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeCCCcHHHHH-----HHHHHHHCCCEEEEEECCH
Confidence            35899999999999985     7889999999999998653

>d2jfga3 c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=82.75  E-value=0.9  Score=35.26  Aligned_cols=34  Identities=32%  Similarity=0.303  Sum_probs=28.9

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEE
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAI   85 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~Vlli   85 (340)
                      ..++|+|+|   -.||||++.-|+..|...|+++.+.
T Consensus        10 ~~~vI~VTG---T~GKTTt~~~l~~iL~~~g~~~~~~   43 (204)
T d2jfga3          10 QAPIVAITG---SNGKSTVTTLVGEMAKAAGVNVGVG   43 (204)
T ss_dssp             CSCEEEEEC---SSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEEEC---CCCHHHHHHHHHHHHHhcCCCcccC
Confidence            347999995   5689999999999999999888653

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=82.68  E-value=4.6  Score=30.71  Aligned_cols=43  Identities=16%  Similarity=0.261  Sum_probs=31.5

Q ss_pred             CCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCCCCCc
Q 047623           46 AGETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVGLRNL   94 (340)
Q Consensus        46 ~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~~~~l   94 (340)
                      .....|.|+|.    |.|=+=  ...|..|+++|++|.++|-++.-+..
T Consensus        39 ~~~~~k~V~II----GaGPAG--L~AA~~la~~G~~Vtl~E~~~~~GG~   81 (179)
T d1ps9a3          39 PAVQKKNLAVV----GAGPAG--LAFAINAAARGHQVTLFDAHSEIGGQ   81 (179)
T ss_dssp             SCSSCCEEEEE----CCSHHH--HHHHHHHHTTTCEEEEEESSSSSCTT
T ss_pred             CCCCCcEEEEE----CccHHH--HHHHHHHHhhccceEEEeccCccCce
Confidence            44556778888    445543  44688889999999999999875554

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=82.61  E-value=0.46  Score=39.16  Aligned_cols=36  Identities=36%  Similarity=0.572  Sum_probs=31.5

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      ..|++.|+|+.+|.|+.     +|..|++.|.+|.++|.+.
T Consensus         5 ~gKvalITGas~GIG~a-----ia~~la~~Ga~V~i~~r~~   40 (268)
T d2bgka1           5 QDKVAIITGGAGGIGET-----TAKLFVRYGAKVVIADIAD   40 (268)
T ss_dssp             TTCEEEEESTTSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeCCCcHHHHH-----HHHHHHHCCCEEEEEECCH
Confidence            46899999999999984     7888999999999998764

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.56  E-value=0.49  Score=38.14  Aligned_cols=44  Identities=16%  Similarity=0.148  Sum_probs=27.7

Q ss_pred             hhHHHHHhhCCCCCCCCCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHC
Q 047623           31 SSIQSVLQWNRKPELAGETPRVVVITSGKGGVGKTTTTANVGLSLARL   78 (340)
Q Consensus        31 ~~~~~~l~~~~~~~~~~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~   78 (340)
                      ..+...++....   ......-+.+ .+..|+||||+|..+|..+-..
T Consensus        17 ~~~~~~L~~~~~---~~~~~~~lll-~Gp~G~GKTt~~~~la~~l~~~   60 (252)
T d1sxje2          17 EELTNFLKSLSD---QPRDLPHLLL-YGPNGTGKKTRCMALLESIFGP   60 (252)
T ss_dssp             HHHHHHHHTTTT---CTTCCCCEEE-ECSTTSSHHHHHHTHHHHHSCT
T ss_pred             HHHHHHHHHHHH---cCCCCCeEEE-ECCCCCCHHHHHHHHHHhhcCc
Confidence            345555555442   1222333444 4889999999999999987433

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.45  E-value=0.48  Score=38.46  Aligned_cols=36  Identities=22%  Similarity=0.289  Sum_probs=30.8

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      .+|++.|+|+.+|.|+.     +|..|++.|.+|+++|-+.
T Consensus         4 ~GK~alITGas~GIG~a-----ia~~la~~Ga~V~~~~r~~   39 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRD-----TVKALHASGAKVVAVTRTN   39 (242)
T ss_dssp             TTCEEEEESTTSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeCCCcHHHHH-----HHHHHHHCCCEEEEEECCH
Confidence            35899999999999985     7888999999999998653

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=82.20  E-value=0.49  Score=38.79  Aligned_cols=36  Identities=28%  Similarity=0.355  Sum_probs=31.2

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      .+|++.|+|+.+|.|+.     +|..|++.|.+|.+.|-+.
T Consensus         4 ~gK~alVTGas~GIG~a-----ia~~la~~Ga~V~~~~r~~   39 (254)
T d1hdca_           4 SGKTVIITGGARGLGAE-----AARQAVAAGARVVLADVLD   39 (254)
T ss_dssp             CCSEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeCcCCHHHHH-----HHHHHHHCCCEEEEEECCH
Confidence            45899999999999985     7888999999999998654

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=82.19  E-value=1  Score=36.52  Aligned_cols=34  Identities=24%  Similarity=0.309  Sum_probs=25.0

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEec
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDA   87 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~   87 (340)
                      .+.|.++ +..|+|||++|..+|..+   |.++.-+++
T Consensus        40 ~~~vLL~-GppGtGKT~la~alA~~~---~~~~~~i~~   73 (246)
T d1d2na_          40 LVSVLLE-GPPHSGKTALAAKIAEES---NFPFIKICS   73 (246)
T ss_dssp             EEEEEEE-CSTTSSHHHHHHHHHHHH---TCSEEEEEC
T ss_pred             CeEEEEE-CcCCCCHHHHHHHHhhcc---ccccccccc
Confidence            4667777 566999999999988653   667666654

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.04  E-value=0.51  Score=38.06  Aligned_cols=39  Identities=28%  Similarity=0.426  Sum_probs=27.9

Q ss_pred             CCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           48 ETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        48 ~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      +..+.+.++ +..|+||||+|..+|..   .+..+..+++...
T Consensus        50 ~~~~~lll~-GPpG~GKTt~a~~la~~---~~~~~~~~~~~~~   88 (253)
T d1sxja2          50 GVFRAAMLY-GPPGIGKTTAAHLVAQE---LGYDILEQNASDV   88 (253)
T ss_dssp             TSCSEEEEE-CSTTSSHHHHHHHHHHH---TTCEEEEECTTSC
T ss_pred             CCCceEEEE-CCCCCCHHHHHHHHHHH---HHhhhhccccccc
Confidence            344556666 66899999999988864   4677877766543

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=81.89  E-value=0.85  Score=39.37  Aligned_cols=34  Identities=29%  Similarity=0.316  Sum_probs=25.3

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHH----CCCcEEEE
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLAR----LGFSVVAI   85 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~----~g~~Vlli   85 (340)
                      -+++..+..|+||||+...+...+.+    .|.+|++.
T Consensus       164 ~~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~  201 (359)
T d1w36d1         164 RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLA  201 (359)
T ss_dssp             SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEE
T ss_pred             CeEEEEcCCCCCceehHHHHHHHHHHHHhccCCeEEEe
Confidence            36666689999999999887666654    36677775

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=81.83  E-value=0.46  Score=39.27  Aligned_cols=36  Identities=25%  Similarity=0.460  Sum_probs=31.8

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      ..|++.|+|+.+|.|+.     +|..|++.|.+|.+.|-+.
T Consensus         4 ~gK~alVTGas~GIG~a-----ia~~la~~Ga~V~l~~r~~   39 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRT-----TAILFAQEGANVTITGRSS   39 (272)
T ss_dssp             TTCEEEETTCSSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeCcCcHHHHH-----HHHHHHHCCCEEEEEECCH
Confidence            45899999999999984     7889999999999998764

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=81.80  E-value=0.53  Score=38.60  Aligned_cols=36  Identities=28%  Similarity=0.363  Sum_probs=31.3

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      .+|++.|+|+.+|.|+.     +|..|++.|.+|.+.|-+.
T Consensus         7 ~GK~alITGas~GIG~a-----ia~~la~~Ga~V~~~~r~~   42 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYG-----IVEELASLGASVYTCSRNQ   42 (259)
T ss_dssp             TTCEEEEESCSSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEECCH
Confidence            46899999999999984     7889999999999998653

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=81.72  E-value=0.52  Score=39.04  Aligned_cols=36  Identities=25%  Similarity=0.415  Sum_probs=31.1

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      .+|++.|+|+.+|.|+.     +|..|++.|.+|.++|-+.
T Consensus         4 ~gK~alITGas~GIG~a-----ia~~la~~Ga~V~i~~r~~   39 (276)
T d1bdba_           4 KGEAVLITGGASGLGRA-----LVDRFVAEGAKVAVLDKSA   39 (276)
T ss_dssp             TTCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEECCH
Confidence            35899999999999985     6788999999999998653

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.49  E-value=3.5  Score=30.56  Aligned_cols=66  Identities=17%  Similarity=0.109  Sum_probs=44.9

Q ss_pred             CCCEEEEcCCCCCCH-HHHHHHhcCCeEEEEeCC-ChhhHHHHHHHHHHHHh---cCCCceEEEEecccCC
Q 047623          166 SPDFILIDCPAGIDA-GFITAITPANEAVLVTTP-DITSLRDADRVTGLLEC---DGIRDIKMVVNRVRTD  231 (340)
Q Consensus       166 ~~D~VIiD~~~~~~~-~~~~~l~~ad~viiv~~~-~~~s~~~~~~~~~~l~~---~~~~~~~vviN~~~~~  231 (340)
                      .+.+-|.|+++.... .....+..+|.++++... +..+...+.+..+....   .....+.+|.|+.+-.
T Consensus        49 ~~~l~i~D~~g~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~  119 (168)
T d2atva1          49 VVSMEILDTAGQEDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLD  119 (168)
T ss_dssp             EEEEEEEECCCCCCCHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGG
T ss_pred             ceEEEEeecccccccccchhhhcccccceeecccCCccchhhhhhhcccccccccccCcceeeeccchhhh
Confidence            378889999986533 334456779988888876 46677777666555433   2234678899999854

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.11  E-value=2.6  Score=31.42  Aligned_cols=110  Identities=11%  Similarity=-0.044  Sum_probs=65.6

Q ss_pred             CCEEEEcCCCCC--CHHHHHHHhcCCeEEEEeCC-ChhhHHHHHHHHHHHHhcCC--CceEEEEecccCCcccccccccH
Q 047623          167 PDFILIDCPAGI--DAGFITAITPANEAVLVTTP-DITSLRDADRVTGLLECDGI--RDIKMVVNRVRTDMIKGEDMMSV  241 (340)
Q Consensus       167 ~D~VIiD~~~~~--~~~~~~~l~~ad~viiv~~~-~~~s~~~~~~~~~~l~~~~~--~~~~vviN~~~~~~~~~~~~~~~  241 (340)
                      +.+.+.|+++..  .......+..+|.++++... +..+...+....+.+.....  ..+.+|.|+.+............
T Consensus        52 ~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~  131 (173)
T d2a5ja1          52 IKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEG  131 (173)
T ss_dssp             EEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHH
T ss_pred             EEEEeecccCccchhhHHHHHhhccCEEEEEEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHH
Confidence            677888998843  33345566788988888774 67788888887777765432  24667779988543222221122


Q ss_pred             HHHHHHhCCceeEEecCChHHHHHHhcCCceEeeCCCC--HHHHHHHHHHHHHHhcc
Q 047623          242 LDIQEMLGLALLGVIPEDSEVIRSTNRGYPLVLNKPPT--LAGLAFEQAAWRLVEQD  296 (340)
Q Consensus       242 ~~i~~~~g~~v~~~Ip~d~~~~~a~~~g~~v~~~~~~s--~~~~~~~~la~~i~~~~  296 (340)
                      ..+.+..                    +.+..+.+.+.  -....|.+++++|+.+.
T Consensus       132 ~~~a~~~--------------------~~~~~e~Sa~tg~~V~e~f~~i~~~i~~~~  168 (173)
T d2a5ja1         132 EAFAREH--------------------GLIFMETSAKTACNVEEAFINTAKEIYRKI  168 (173)
T ss_dssp             HHHHHHH--------------------TCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHc--------------------CCEEEEecCCCCCCHHHHHHHHHHHHHHHH
Confidence            2333333                    34444443332  24556777888777553

>d1p3da3 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=81.09  E-value=0.77  Score=36.05  Aligned_cols=33  Identities=21%  Similarity=0.300  Sum_probs=28.8

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEe
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAID   86 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD   86 (340)
                      ++|+|+|   -.||||++.-|++.|.+.|+++..+-
T Consensus        13 ~~I~ITG---TnGKTTt~~~l~~iL~~~~~~~~~~~   45 (215)
T d1p3da3          13 HGIAVAG---THGKTTTTAMISMIYTQAKLDPTFVN   45 (215)
T ss_dssp             EEEEEES---SSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CEEEEEC---CCCHHHHHHHHHHHHHhCCCCceEee
Confidence            7899985   67999999999999999998887664

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=81.03  E-value=0.45  Score=39.30  Aligned_cols=36  Identities=25%  Similarity=0.475  Sum_probs=31.7

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      +|++.|+|+.+|.|+.     +|..|++.|.+|.+.|.+..
T Consensus        18 gK~~lITGas~GIG~a-----ia~~la~~Ga~Vvi~~~~~~   53 (272)
T d1g0oa_          18 GKVALVTGAGRGIGRE-----MAMELGRRGCKVIVNYANST   53 (272)
T ss_dssp             TCEEEETTTTSHHHHH-----HHHHHHHTTCEEEEEESSCH
T ss_pred             CCEEEEeCCCCHHHHH-----HHHHHHHcCCEEEEEeCCch
Confidence            5899999999999985     77899999999999987644

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=81.02  E-value=1.1  Score=37.86  Aligned_cols=38  Identities=24%  Similarity=0.286  Sum_probs=29.8

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      ++.++ +-.|+|||.+|..||..|...+.+..-+|+...
T Consensus        55 ~~lf~-Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~   92 (315)
T d1qvra3          55 SFLFL-GPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY   92 (315)
T ss_dssp             EEEEB-SCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTC
T ss_pred             EEEEE-CCCcchHHHHHHHHHHHhcCCCcceEEEecccc
Confidence            55555 778999999999999999766667777777543

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=80.98  E-value=0.64  Score=37.32  Aligned_cols=34  Identities=26%  Similarity=0.524  Sum_probs=29.2

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      .|.|+|+.+|.|+.     +|..|++.|.+|.++|.+..
T Consensus         4 kVlITGas~GIG~a-----ia~~l~~~G~~V~~~~~~~~   37 (235)
T d1ooea_           4 KVIVYGGKGALGSA-----ILEFFKKNGYTVLNIDLSAN   37 (235)
T ss_dssp             EEEEETTTSHHHHH-----HHHHHHHTTEEEEEEESSCC
T ss_pred             EEEEECCCCHHHHH-----HHHHHHHCCCEEEEEECCch
Confidence            45799999999984     78899999999999998765

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=80.93  E-value=0.5  Score=37.84  Aligned_cols=31  Identities=26%  Similarity=0.371  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEe
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAID   86 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD   86 (340)
                      -+.++ +-.|+||||+|..+|..+   +.....+.
T Consensus        37 ~~L~~-GPpGtGKT~lA~~la~~~---~~~~~~~~   67 (238)
T d1in4a2          37 HVLLA-GPPGLGKTTLAHIIASEL---QTNIHVTS   67 (238)
T ss_dssp             CEEEE-SSTTSSHHHHHHHHHHHH---TCCEEEEE
T ss_pred             eEEEE-CCCCCcHHHHHHHHHhcc---CCCccccc
Confidence            35565 569999999998777653   45555443

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=80.91  E-value=0.46  Score=39.37  Aligned_cols=36  Identities=22%  Similarity=0.442  Sum_probs=31.4

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      .+|++.|+|+.+|.|+.     +|..|++.|.+|.+.|-+.
T Consensus         3 ~gK~alITGas~GIG~a-----ia~~la~~Ga~V~~~~r~~   38 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRS-----AAVIFAKEGAQVTITGRNE   38 (274)
T ss_dssp             TTCEEEETTCSSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeCCCcHHHHH-----HHHHHHHCCCEEEEEECCH
Confidence            46899999999999985     7888999999999998764

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=80.89  E-value=0.57  Score=38.27  Aligned_cols=34  Identities=32%  Similarity=0.600  Sum_probs=29.9

Q ss_pred             EEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           51 RVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        51 ~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      |+..|+|+.+|.|+.     +|..|++.|.+|.+.|-+.
T Consensus         2 KValITGas~GIG~a-----ia~~la~~Ga~V~~~~r~~   35 (255)
T d1gega_           2 KVALVTGAGQGIGKA-----IALRLVKDGFAVAIADYND   35 (255)
T ss_dssp             CEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEcCCccHHHHH-----HHHHHHHCCCEEEEEECCH
Confidence            688999999999985     7888999999999998764

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=80.79  E-value=0.27  Score=42.22  Aligned_cols=32  Identities=25%  Similarity=0.257  Sum_probs=27.0

Q ss_pred             EEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEe
Q 047623           55 ITSGKGGVGKTTTTANVGLSLARLGFSVVAID   86 (340)
Q Consensus        55 v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD   86 (340)
                      +.-+-=|+||||++..|+..+..+|.+|.++.
T Consensus         9 ~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~~~   40 (331)
T d1osna_           9 YLDGAYGIGKTTAAEEFLHHFAITPNRILLIG   40 (331)
T ss_dssp             EEEESSSSCTTHHHHHHHHTTTTSGGGEEEEC
T ss_pred             EEECCCCCCHHHHHHHHHHHHhhcCCceEEEe
Confidence            33355689999999999999998899998885

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=80.74  E-value=0.91  Score=32.72  Aligned_cols=32  Identities=25%  Similarity=0.418  Sum_probs=23.1

Q ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEe
Q 047623           52 VVVITSGKGGVGKTTTTANVGLSLARLGFSVVAID   86 (340)
Q Consensus        52 iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD   86 (340)
                      -.++...--|+|||+++..   .+.+.|.+|+++-
T Consensus         9 ~~~ll~apTGsGKT~~~~~---~~~~~~~~vli~~   40 (136)
T d1a1va1           9 QVAHLHAPTGSGKSTKVPA---AYAAQGYKVLVLN   40 (136)
T ss_dssp             EEEEEECCTTSCTTTHHHH---HHHTTTCCEEEEE
T ss_pred             CEEEEEeCCCCCHHHHHHH---HHHHcCCcEEEEc
Confidence            4556667889999987643   4567788888763

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=80.74  E-value=0.67  Score=37.84  Aligned_cols=37  Identities=22%  Similarity=0.320  Sum_probs=31.5

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      .+|++.|+|+.+|.|+.     +|..|+++|.+|.+++-+..
T Consensus         4 ~gK~vlITGgs~GIG~~-----~A~~la~~G~~vii~~r~~~   40 (254)
T d1sbya1           4 TNKNVIFVAALGGIGLD-----TSRELVKRNLKNFVILDRVE   40 (254)
T ss_dssp             TTCEEEEETTTSHHHHH-----HHHHHHHTCCSEEEEEESSC
T ss_pred             CCCEEEEecCCCHHHHH-----HHHHHHHCCCEEEEEECCcc
Confidence            46899999999999985     78899999999999875543

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=80.61  E-value=3.6  Score=29.98  Aligned_cols=39  Identities=21%  Similarity=0.319  Sum_probs=30.7

Q ss_pred             CCCCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCCC
Q 047623           47 GETPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADVG   90 (340)
Q Consensus        47 ~~~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   90 (340)
                      ...++.|+|.|+-|-.|.+     +|..|.+.|+.|.++|.+..
T Consensus         6 ~~~~~kI~iIGg~G~mG~~-----la~~L~~~G~~V~~~d~~~~   44 (152)
T d2pv7a2           6 NSDIHKIVIVGGYGKLGGL-----FARYLRASGYPISILDREDW   44 (152)
T ss_dssp             CTTCCCEEEETTTSHHHHH-----HHHHHHTTTCCEEEECTTCG
T ss_pred             CCCCCeEEEEcCCCHHHHH-----HHHHHHHcCCCcEecccccc
Confidence            4566788998766666665     88888999999999987754

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=80.39  E-value=0.44  Score=39.01  Aligned_cols=36  Identities=31%  Similarity=0.338  Sum_probs=30.8

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      ..|++.|+|+.+|.|+.     +|..|++.|.+|.+.|.+.
T Consensus         5 ~gK~alITGas~GIG~a-----ia~~la~~Ga~V~~~~~~~   40 (253)
T d1hxha_           5 QGKVALVTGGASGVGLE-----VVKLLLGEGAKVAFSDINE   40 (253)
T ss_dssp             TTCEEEETTTTSHHHHH-----HHHHHHHTTCEEEEECSCH
T ss_pred             CCCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEECCH
Confidence            45899999999999985     7788999999999988653

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.33  E-value=0.37  Score=38.72  Aligned_cols=29  Identities=28%  Similarity=0.331  Sum_probs=22.9

Q ss_pred             CEEEEEEcCCCCCcHHHHHHHHHHHHHHCC
Q 047623           50 PRVVVITSGKGGVGKTTTTANVGLSLARLG   79 (340)
Q Consensus        50 ~~iI~v~s~kGGvGKTt~a~~LA~~la~~g   79 (340)
                      +|.|+|- |--|+||||++..|+..|...+
T Consensus         2 pk~IviE-G~~GsGKST~~~~L~~~l~~~~   30 (241)
T d2ocpa1           2 PRRLSIE-GNIAVGKSTFVKLLTKTYPEWH   30 (241)
T ss_dssp             CEEEEEE-ECTTSSHHHHHHHHHHHCTTSE
T ss_pred             CeEEEEE-CCCCCcHHHHHHHHHHHHhhcC
Confidence            4778876 5668999999999998876543

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.31  E-value=0.62  Score=39.08  Aligned_cols=36  Identities=31%  Similarity=0.509  Sum_probs=31.6

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      .+|++.|+|+.+|.|+.     +|..|++.|.+|.+.|-+.
T Consensus        11 ~gKvalITGas~GIG~a-----ia~~la~~Ga~Vvi~~r~~   46 (297)
T d1yxma1          11 QGQVAIVTGGATGIGKA-----IVKELLELGSNVVIASRKL   46 (297)
T ss_dssp             TTCEEEEETTTSHHHHH-----HHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEeCCCCHHHHH-----HHHHHHHCCCEEEEEECCH
Confidence            56999999999999985     6888999999999998764

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=80.05  E-value=0.45  Score=38.98  Aligned_cols=36  Identities=31%  Similarity=0.549  Sum_probs=31.4

Q ss_pred             CCEEEEEEcCCCCCcHHHHHHHHHHHHHHCCCcEEEEecCC
Q 047623           49 TPRVVVITSGKGGVGKTTTTANVGLSLARLGFSVVAIDADV   89 (340)
Q Consensus        49 ~~~iI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   89 (340)
                      .+|++.|+|+.+|.|+.     +|..|++.|.+|.+.|-+.
T Consensus        10 ~gK~alITGas~GIG~a-----ia~~la~~Ga~V~~~~r~~   45 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKE-----IAITFATAGASVVVSDINA   45 (255)
T ss_dssp             TTCEEEETTTTSHHHHH-----HHHHHHTTTCEEEEEESCH
T ss_pred             CCCEEEEeCCCcHHHHH-----HHHHHHHCCCEEEEEECCH
Confidence            46899999999999985     6888999999999998754