Citrus Sinensis ID: 047648
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 537 | 2.2.26 [Sep-21-2011] | |||||||
| O04504 | 606 | Pentatricopeptide repeat- | yes | no | 0.994 | 0.881 | 0.515 | 1e-167 | |
| Q0WVK7 | 741 | Pentatricopeptide repeat- | no | no | 0.886 | 0.642 | 0.324 | 6e-70 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.931 | 0.669 | 0.294 | 3e-66 | |
| Q9ZQF1 | 627 | Pentatricopeptide repeat- | no | no | 0.677 | 0.580 | 0.348 | 5e-61 | |
| Q6NQ83 | 619 | Pentatricopeptide repeat- | no | no | 0.709 | 0.615 | 0.340 | 1e-60 | |
| Q9LFF1 | 754 | Pentatricopeptide repeat- | no | no | 0.707 | 0.503 | 0.341 | 1e-60 | |
| Q9LVQ5 | 1096 | Pentatricopeptide repeat- | no | no | 0.914 | 0.447 | 0.289 | 2e-60 | |
| Q9T0D6 | 566 | Pentatricopeptide repeat- | no | no | 0.780 | 0.740 | 0.313 | 3e-60 | |
| Q3EDF8 | 598 | Pentatricopeptide repeat- | no | no | 0.780 | 0.700 | 0.289 | 6e-60 | |
| P0C7Q7 | 602 | Putative pentatricopeptid | no | no | 0.698 | 0.622 | 0.320 | 2e-59 |
| >sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820 OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 590 bits (1520), Expect = e-167, Method: Compositional matrix adjust.
Identities = 301/584 (51%), Positives = 398/584 (68%), Gaps = 50/584 (8%)
Query: 2 FCSANSTIED-----------ITELIRNHHWSKL----KNTDPNTVILQLFNSDADPVLI 46
CS++STI I +LI HWSKL + +PN + QL +S+ DP L
Sbjct: 25 LCSSSSTITGSPCPPRYDVAVIADLIEKQHWSKLGVHVTDINPNELFRQLISSELDPDLC 84
Query: 47 LRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALS 106
LRY+ W K S SL LT +LLHSL AK+Y KIRSFL FV+NG V +IFHA+S
Sbjct: 85 LRYYSWLVKNSDISVSLELTFKLLHSLANAKRYSKIRSFLDGFVRNGSDHQVHSIFHAIS 144
Query: 107 TCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGK 166
C D++C NSII DML+LAY N + LGFEAFKR+G YG K S LSC L+ AL+KE +
Sbjct: 145 MC-DNVCVNSIIADMLVLAYANNSRFELGFEAFKRSGYYGYKLSALSCKPLMIALLKENR 203
Query: 167 FEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNI 226
DVEYVYKEM RR+I+ N+ +FN V+N LCK GK+NKA D+MEDMK G SP VV+YN
Sbjct: 204 SADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNT 263
Query: 227 LIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMG 286
LIDGYCK GG GKMYKADAV K+MVEN + PN TFN LIDGF KD+N+ +MKVF+EM
Sbjct: 264 LIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEML 323
Query: 287 SHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVE 346
+ V++YNSLINGLC GK+ EA+++RD+M+++G++PN++T NALINGFCK +++
Sbjct: 324 DQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLK 383
Query: 347 KARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLI 406
+A +F + QG P+ YN LIDAYCK G+++D FA++ M G++PDV TYNCLI
Sbjct: 384 EALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLI 443
Query: 407 AGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFK---- 462
AGL R GN+E + + ++L + G+ LVT++IL+ C+ G+S+KA LL EM K
Sbjct: 444 AGLCRNGNIEAAKKLFDQLTSKGL-PDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLK 502
Query: 463 ----------------------------MEKEKKWP-NIVTYNVLIKGFCQKGKLEDANG 493
MEKE++ N+ +YNVL++G+ QKGKLEDAN
Sbjct: 503 PRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANM 562
Query: 494 LLNELLEKGLIPNQTTYQIVREEMMEKGFIPDIEGHMYNISGTS 537
LLNE+LEKGL+PN+ TY+IV+EEM+++GF+PDIEGH++N+S S
Sbjct: 563 LLNEMLEKGLVPNRITYEIVKEEMVDQGFVPDIEGHLFNVSTKS 606
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 265 bits (677), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 168/517 (32%), Positives = 258/517 (49%), Gaps = 41/517 (7%)
Query: 30 NTVILQLFNSDADPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMF 89
+ +I L D L+L +F W+ R +L ++H V +K +S + F
Sbjct: 88 DHLIWVLMKIKCDYRLVLDFFDWARS--RRDSNLESLCIVIHLAVASKDLKVAQSLISSF 145
Query: 90 VKNGKFT---SVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYG 146
+ K S F L + + D+ V F++ +YG
Sbjct: 146 WERPKLNVTDSFVQFFDLLVYTYKDWGSDPRVFDVFFQVLVDFGLLREARRVFEKMLNYG 205
Query: 147 LKSSVLSCNQLLRALVKEG-KFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKA 205
L SV SCN L L K+ K V++E + N+ S+N V++ +C+ G++ +A
Sbjct: 206 LVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEA 265
Query: 206 SDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYK----------------------- 242
++ M+ G +P V++Y+ +++GYC+ G + K++K
Sbjct: 266 HHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGL 325
Query: 243 ---------ADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAG 293
A+ F +M+ GILP+ V + TLIDGFCK +I AA K F EM S I
Sbjct: 326 LCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPD 385
Query: 294 VVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFD 353
V+TY ++I+G C G + EA L EM GL+P+ VT LING+CK ++ A + +
Sbjct: 386 VLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHN 445
Query: 354 DISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREG 413
+ + G SP+V+TY TLID CKEG ++ A + + M G+ P++ TYN ++ GL + G
Sbjct: 446 HMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSG 505
Query: 414 NVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIV 473
N+E ++ E G+ A VTY L+ A CK G+ KA +L EM + P IV
Sbjct: 506 NIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQ---PTIV 562
Query: 474 TYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTY 510
T+NVL+ GFC G LED LLN +L KG+ PN TT+
Sbjct: 563 TFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTF 599
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 253 bits (646), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 156/530 (29%), Positives = 278/530 (52%), Gaps = 30/530 (5%)
Query: 2 FCSANSTIEDITELIRNHHWSKLKNTDPNTVILQLFNSDADPVLILRYFCWSTKELRASH 61
C + S++ D+ ++++ +S+L D I+ L + +L Y +R+
Sbjct: 129 LCYSTSSVFDL--VVKS--YSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKR 184
Query: 62 SLLLTGRLLHSLVVAKKYPKIRSF---LHMFVKNGKFTSVSTIFHALSTCSDSLCRNSII 118
++ + ++ ++ P + ++ + F G T+F + T N +
Sbjct: 185 NISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMET--KGCLPNVVT 242
Query: 119 IDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMK 178
+ L+ Y K K GF+ + GL+ +++S N ++ L +EG+ ++V +V EM
Sbjct: 243 YNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMN 302
Query: 179 RRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIG 238
RR L+ ++N ++ G CK G ++A + +M G++P V+TY LI CK G
Sbjct: 303 RRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGN-- 360
Query: 239 KMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYN 298
M +A M G+ PNE T+ TL+DGF + ++ A +V EM +G + VVTYN
Sbjct: 361 -MNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYN 419
Query: 299 SLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQ 358
+LING CV GK+++A+A+ ++M GL P+VV+ + +++GFC+ V++A + ++ E+
Sbjct: 420 ALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEK 479
Query: 359 GLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGV 418
G+ P ITY++LI +C++ R ++A + ML G+ PD TY LI EG++E
Sbjct: 480 GIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKA 539
Query: 419 RNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNV- 477
+ NE+V G+ +VTY++L+ L K ++++A LL ++F E+ P+ VTY+
Sbjct: 540 LQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLF---YEESVPSDVTYHTL 596
Query: 478 --------------LIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIV 513
LIKGFC KG + +A+ + +L K P+ T Y I+
Sbjct: 597 IENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIM 646
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZQF1|PP152_ARATH Pentatricopeptide repeat-containing protein At2g15630, mitochondrial OS=Arabidopsis thaliana GN=At2g15630 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 236 bits (601), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 130/373 (34%), Positives = 207/373 (55%), Gaps = 9/373 (2%)
Query: 145 YGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNK 204
+G+K ++++ N L++ G+ E + EMK + + ++ ++N +L+ +C G+
Sbjct: 254 FGIKPTIVTYNTLVQGFSLRGRIEGARLIISEMKSKGFQPDMQTYNPILSWMCNEGR--- 310
Query: 205 ASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNT 264
AS+++ +MK +G+ P V+YNILI G C G +M A A +MV+ G++P T+NT
Sbjct: 311 ASEVLREMKEIGLVPDSVSYNILIRG-CSNNGDLEM--AFAYRDEMVKQGMVPTFYTYNT 367
Query: 265 LIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASG 324
LI G + I AA + E+ GI VTYN LING C G +A AL DEMM G
Sbjct: 368 LIHGLFMENKIEAAEILIREIREKGIVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDG 427
Query: 325 LKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAF 384
++P T +LI C+K +A LF+ + +G+ P ++ NTL+D +C G M+ AF
Sbjct: 428 IQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGHCAIGNMDRAF 487
Query: 385 AMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGAL 444
++ M + PD TYNCL+ GL EG E R +M E+ G++ ++YN L+
Sbjct: 488 SLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDHISYNTLISGY 547
Query: 445 CKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLI 504
K G +K A + DEM + P ++TYN L+KG + + E A LL E+ +G++
Sbjct: 548 SKKGDTKHAFMVRDEMLSLGFN---PTLLTYNALLKGLSKNQEGELAEELLREMKSEGIV 604
Query: 505 PNQTTYQIVREEM 517
PN +++ V E M
Sbjct: 605 PNDSSFCSVIEAM 617
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 234 bits (597), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 132/388 (34%), Positives = 213/388 (54%), Gaps = 7/388 (1%)
Query: 141 RAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAG 200
R +YG + ++ +L L K G ++++M+ R I+ ++ ++ V++ LCK G
Sbjct: 200 RMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDG 259
Query: 201 KLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEV 260
+ A + +M+ G+ VVTY+ LI G C GK + ++M+ I+P+ V
Sbjct: 260 SFDDALSLFNEMEMKGIKADVVTYSSLIGGLCND---GKWDDGAKMLREMIGRNIIPDVV 316
Query: 261 TFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEM 320
TF+ LID F K+ + A +++ EM + GIA +TYNSLI+G C + L EA + D M
Sbjct: 317 TFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLM 376
Query: 321 MASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRM 380
++ G +P++VT + LIN +CK K V+ LF +IS +GL P+ ITYNTL+ +C+ G++
Sbjct: 377 VSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKL 436
Query: 381 EDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNIL 440
A + M+ RGV P V TY L+ GL G + I ++ + M G+ YNI+
Sbjct: 437 NAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNII 496
Query: 441 VGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLE 500
+ +C K A SL + + P++VTYNV+I G C+KG L +A+ L ++ E
Sbjct: 497 IHGMCNASKVDDAWSLF---CSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKE 553
Query: 501 KGLIPNQTTYQI-VREEMMEKGFIPDIE 527
G P+ TY I +R + G I +E
Sbjct: 554 DGCTPDDFTYNILIRAHLGGSGLISSVE 581
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 234 bits (597), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 148/434 (34%), Positives = 222/434 (51%), Gaps = 54/434 (12%)
Query: 144 DYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRR-IELNLDSFNFVLNGLCKAGKL 202
++G S +S N ++ KEG+ ED +EM + + +FN ++NGLCKAG +
Sbjct: 252 EFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHV 311
Query: 203 NKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGI------------------------- 237
A +IM+ M G P V TYN +I G CK G +
Sbjct: 312 KHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTL 371
Query: 238 -------GKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGI 290
++ +A + + + GILP+ TFN+LI G C N AM++FEEM S G
Sbjct: 372 ISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGC 431
Query: 291 AAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARV 350
TYN LI+ LC GKLDEA+ + +M SG +V+T N LI+GFCK +A
Sbjct: 432 EPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEE 491
Query: 351 LFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLS 410
+FD++ G+S + +TYNTLID CK R+EDA + + M+ G PD TYN L+
Sbjct: 492 IFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFC 551
Query: 411 REGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWP 470
R G+++ +I+ + +NG +VTY L+ LCK G+ + A LL + +M+ P
Sbjct: 552 RGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSI-QMKGINLTP 610
Query: 471 NIVTYNVLIKGFCQKGKLEDANGLLNELLEKG-LIPNQTTYQIV-----------RE--- 515
+ YN +I+G +K K +A L E+LE+ P+ +Y+IV RE
Sbjct: 611 H--AYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVD 668
Query: 516 ---EMMEKGFIPDI 526
E++EKGF+P+
Sbjct: 669 FLVELLEKGFVPEF 682
|
May be involved in female gametophyte development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 233 bits (595), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 155/536 (28%), Positives = 258/536 (48%), Gaps = 45/536 (8%)
Query: 10 EDITELIRNHHWSKLKNTDPNTVILQLFNSDADPVLILRYFCWSTKE--LRASHSLLLTG 67
+ I ++ W L + D L+L + L L++ W K+ L H + L
Sbjct: 21 KSIYNILTIDRWGSLNHMDYRQARLRLVHGK----LALKFLKWVVKQPGLETDHIVQLVC 76
Query: 68 RLLHSLVVAKKYPKIRSFL-HMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAY 126
H LV A+ Y R L + + +GK S +F AL T N + D+L+ Y
Sbjct: 77 ITTHILVRARMYDPARHILKELSLMSGK---SSFVFGALMTTYRLCNSNPSVYDILIRVY 133
Query: 127 VKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNL 186
++ E F+ G YG SV +CN +L ++VK G+ V KEM +R+I ++
Sbjct: 134 LREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDV 193
Query: 187 DSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKG----------- 235
+FN ++N LC G K+S +M+ M+ G +P +VTYN ++ YCKKG
Sbjct: 194 ATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDH 253
Query: 236 ----GI-----------------GKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDEN 274
G+ ++ K + +DM + I PNEVT+NTLI+GF +
Sbjct: 254 MKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGK 313
Query: 275 ISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNA 334
+ A ++ EM S G++ VT+N+LI+G +G EA+ + M A GL P+ V+
Sbjct: 314 VLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGV 373
Query: 335 LINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRG 394
L++G CK + AR + + G+ ITY +ID CK G +++A + N M G
Sbjct: 374 LLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDG 433
Query: 395 VLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAV 454
+ PD+ TY+ LI G + G + + I+ + G+ + Y+ L+ C+ G K+A+
Sbjct: 434 IDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAI 493
Query: 455 SLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTY 510
+ + M E + T+NVL+ C+ GK+ +A + + G++PN ++
Sbjct: 494 RIYEAMI---LEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSF 546
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9T0D6|PP306_ARATH Pentatricopeptide repeat-containing protein At4g11690 OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 233 bits (594), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 143/456 (31%), Positives = 232/456 (50%), Gaps = 37/456 (8%)
Query: 92 NGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSV 151
+ +F + S++ H L+ S + + ++++ +YV++ +L F D G
Sbjct: 71 HSQFFTSSSLLHYLTESETSKTKFRLY-EVIINSYVQSQSLNLSISYFNEMVDNGFVPGS 129
Query: 152 LSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMED 211
N LL +V F + E K + + L++ SF ++ G C+AG++ K+ D++ +
Sbjct: 130 NCFNYLLTFVVGSSSFNQWWSFFNENKSKVV-LDVYSFGILIKGCCEAGEIEKSFDLLIE 188
Query: 212 MKSLGVSPKVVTYNILIDGYCKKGGIGK--------------------------MYKADA 245
+ G SP VV Y LIDG CKKG I K ++K
Sbjct: 189 LTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGV 248
Query: 246 ------VFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNS 299
+++ M E+G+ PN T+N +++ CKD A +VF+EM G++ +VTYN+
Sbjct: 249 KKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNT 308
Query: 300 LINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQG 359
LI GLC + KL+EA + D+M + G+ PN++T N LI+GFC + KA L D+ +G
Sbjct: 309 LIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRG 368
Query: 360 LSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVR 419
LSPS++TYN L+ +C++G A M M +RG+ P TY LI +R N+E
Sbjct: 369 LSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAI 428
Query: 420 NIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLI 479
+ + G+ + TY++L+ C G+ +A L M + E PN V YN +I
Sbjct: 429 QLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCE---PNEVIYNTMI 485
Query: 480 KGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVRE 515
G+C++G A LL E+ EK L PN +Y+ + E
Sbjct: 486 LGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIE 521
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 232 bits (591), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 137/473 (28%), Positives = 238/473 (50%), Gaps = 54/473 (11%)
Query: 76 AKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLG 135
A+K+ + S NG ++SV++ F S++ R V+ + G
Sbjct: 72 AQKFETLSSGYSNSNGNGHYSSVNSSFALEDVESNNHLRQ----------MVRTGELEEG 121
Query: 136 FEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNG 195
F+ + +G ++ C L+R + GK + + ++ ++ ++N +++G
Sbjct: 122 FKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISG 181
Query: 196 LCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGI 255
CKAG++N A +++ M VSP VVTYN ++ C GK+ +A V M++
Sbjct: 182 YCKAGEINNALSVLDRMS---VSPDVVTYNTILRSLCDS---GKLKQAMEVLDRMLQRDC 235
Query: 256 LPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVA 315
P+ +T+ LI+ C+D + AMK+ +EM G VVTYN L+NG+C +G+LDEA+
Sbjct: 236 YPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIK 295
Query: 316 LRDEMMASGLKPNVVTS-----------------------------------NALINGFC 340
++M +SG +PNV+T N LIN C
Sbjct: 296 FLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLC 355
Query: 341 KKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVS 400
+K L+ +A + + + + G P+ ++YN L+ +CKE +M+ A M+ RG PD+
Sbjct: 356 RKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIV 415
Query: 401 TYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEM 460
TYN ++ L ++G VE I+N+L + G L+TYN ++ L K GK+ KA+ LLDEM
Sbjct: 416 TYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEM 475
Query: 461 FKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIV 513
+ + P+ +TY+ L+ G ++GK+++A +E G+ PN T+ +
Sbjct: 476 RAKDLK---PDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSI 525
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 230 bits (587), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 122/381 (32%), Positives = 217/381 (56%), Gaps = 6/381 (1%)
Query: 141 RAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAG 200
R + G + V++ N ++ + + G + ++M+ R ++ ++ +++ +++ LC+ G
Sbjct: 183 RMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDG 242
Query: 201 KLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEV 260
++ A + ++M++ G+ VVTYN L+ G CK G K + KDMV I+PN +
Sbjct: 243 CIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAG---KWNDGALLLKDMVSREIVPNVI 299
Query: 261 TFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEM 320
TFN L+D F K+ + A ++++EM + GI+ ++TYN+L++G C+ +L EA + D M
Sbjct: 300 TFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLM 359
Query: 321 MASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRM 380
+ + P++VT +LI G+C K V+ +F +IS++GL + +TY+ L+ +C+ G++
Sbjct: 360 VRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKI 419
Query: 381 EDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNIL 440
+ A + M+ GVLPDV TY L+ GL G +E I +L + M G+V Y +
Sbjct: 420 KLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTI 479
Query: 441 VGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLE 500
+ +CK GK + A +L + + PN++TY V+I G C+KG L +AN LL ++ E
Sbjct: 480 IEGMCKGGKVEDAWNLF---CSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEE 536
Query: 501 KGLIPNQTTYQIVREEMMEKG 521
G PN TY + + G
Sbjct: 537 DGNAPNDCTYNTLIRAHLRDG 557
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 537 | ||||||
| 224123734 | 529 | predicted protein [Populus trichocarpa] | 0.925 | 0.939 | 0.621 | 0.0 | |
| 449454139 | 611 | PREDICTED: pentatricopeptide repeat-cont | 0.994 | 0.873 | 0.580 | 0.0 | |
| 296089773 | 577 | unnamed protein product [Vitis vinifera] | 0.992 | 0.923 | 0.604 | 0.0 | |
| 357477483 | 583 | Pentatricopeptide repeat-containing prot | 0.985 | 0.907 | 0.572 | 0.0 | |
| 359487666 | 609 | PREDICTED: pentatricopeptide repeat-cont | 0.992 | 0.875 | 0.572 | 0.0 | |
| 356538593 | 583 | PREDICTED: pentatricopeptide repeat-cont | 0.985 | 0.907 | 0.570 | 0.0 | |
| 15218284 | 606 | pentatricopeptide repeat-containing prot | 0.994 | 0.881 | 0.515 | 1e-166 | |
| 297849294 | 606 | pentatricopeptide repeat-containing prot | 0.992 | 0.879 | 0.515 | 1e-165 | |
| 255542744 | 546 | pentatricopeptide repeat-containing prot | 0.806 | 0.793 | 0.610 | 1e-161 | |
| 357140697 | 571 | PREDICTED: pentatricopeptide repeat-cont | 0.826 | 0.777 | 0.446 | 1e-117 |
| >gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa] gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/529 (62%), Positives = 404/529 (76%), Gaps = 32/529 (6%)
Query: 32 VILQLFNSDADPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVK 91
++ QL NS ADP LILRYF WS KE + SHSL LT R+L+SL KKY KIRSFL FVK
Sbjct: 1 LLQQLLNSGADPELILRYFTWSQKEFKLSHSLELTFRILNSLAHTKKYSKIRSFLDKFVK 60
Query: 92 NGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSV 151
K SVS IFHA+S DS C NSI+ DML+LA+V+N+K GFEAFKRAGDYG K S+
Sbjct: 61 YEKDYSVSAIFHAISMSGDSFCVNSILADMLVLAFVRNLKILRGFEAFKRAGDYGFKLSL 120
Query: 152 LSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMED 211
+SCN LL LVKE + D+E+VY+EM +R+IELN+ SFN V+NGLCK GKLN+A D++ED
Sbjct: 121 ISCNPLLSGLVKESENGDMEFVYREMIKRKIELNVISFNIVVNGLCKVGKLNRAGDVIED 180
Query: 212 MKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCK 271
MK GVSP V+TYN LIDGYCK G IGKMYKADA+ K+MV GI PNEVT+N LIDGFCK
Sbjct: 181 MKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCK 240
Query: 272 DENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVT 331
DEN+S AM+VF EM G+ VVTYN LINGLC DGK+DEAVALRD+M++S L+PNVVT
Sbjct: 241 DENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVT 300
Query: 332 SNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSML 391
N LINGFCK K V +A LF+D+ +QG+ P+ +TY TLIDAYCK+GRMEDAFA+ N M+
Sbjct: 301 HNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMI 360
Query: 392 DRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSK 451
DRG+ P+VSTYNCLIAGL R+G+V+ R++MNE+V+ + A +VTYNIL+ +LCK G+S+
Sbjct: 361 DRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGESR 420
Query: 452 KAVSLLDEMF--------------------------------KMEKEKKWPNIVTYNVLI 479
KAV LLDEMF +ME++ K N+VT+NVLI
Sbjct: 421 KAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGKQANVVTHNVLI 480
Query: 480 KGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMMEKGFIPDIEG 528
KGFC KG+LEDANGLLNE+LE+GL+PN+TTY+I++EEMMEKGF+PDIEG
Sbjct: 481 KGFCLKGRLEDANGLLNEMLERGLVPNRTTYEIIKEEMMEKGFVPDIEG 529
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09820-like [Cucumis sativus] gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09820-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/581 (58%), Positives = 415/581 (71%), Gaps = 47/581 (8%)
Query: 1 PFCSANSTIED----------ITELIRNHHWSKLKN----TDPNTVILQLFNS-DADPVL 45
PFC+ N T I++LI WS LK+ P + QL S D DP+L
Sbjct: 30 PFCTYNPTCTAPISNDFDPLIISDLISRQQWSILKSHVKFKSPIDFLHQLMGSGDVDPLL 89
Query: 46 ILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHAL 105
+LRYF WS +EL ++S+ L RLL+ L AK YPKIRS L FVK S+S IFH+L
Sbjct: 90 VLRYFNWSRRELNVNYSIELICRLLNLLANAKHYPKIRSILDSFVKGETNCSISLIFHSL 149
Query: 106 STCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEG 165
S CS C NSII DML+LAYV+N K LG EAFKRAGDY K SVLSCN LL ALVKE
Sbjct: 150 SVCSGQFCANSIIADMLVLAYVENSKTVLGLEAFKRAGDYRYKLSVLSCNPLLSALVKEN 209
Query: 166 KFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYN 225
+F VE+VYKEM RR+I NL +FN V+NGLCK GKLNKA D+++DMK G P VVTYN
Sbjct: 210 EFGGVEFVYKEMIRRKISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYN 269
Query: 226 ILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEM 285
LIDGYCK G +GKMYKADA+ K+MVEN + PN VTFN LIDGFCKDEN+SAA+KVFEEM
Sbjct: 270 TLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEM 329
Query: 286 GSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLV 345
S G+ VVTYNSL+NGLC +GKL+EA L DEM++S LKPNV+T NALING+CKKKL+
Sbjct: 330 QSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLL 389
Query: 346 EKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCL 405
E+AR LFD+I +QGL+P+VIT+NTL+ YCK G+ME+AF ++ ML++G LP+ STYNCL
Sbjct: 390 EEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCL 449
Query: 406 IAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMF---- 461
I G REG +E V+N++NE+ G++A VTYNIL+ A C+ + KKA L+DEM
Sbjct: 450 IVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGL 509
Query: 462 ----------------------------KMEKEKKWPNIVTYNVLIKGFCQKGKLEDANG 493
+MEKE +W N+VTYNVLI+G+C+KGKLEDANG
Sbjct: 510 KPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNVLIQGYCRKGKLEDANG 569
Query: 494 LLNELLEKGLIPNQTTYQIVREEMMEKGFIPDIEGHMYNIS 534
LLNE+LEKGLIPN+TTY+I++EEMMEKGF+PDIEGH+Y+ S
Sbjct: 570 LLNEMLEKGLIPNRTTYEIIKEEMMEKGFLPDIEGHLYHAS 610
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/551 (60%), Positives = 411/551 (74%), Gaps = 18/551 (3%)
Query: 1 PFCSANST----------IEDITELIRNHHWSKLKN----TDPNTVILQLFNSDADPVLI 46
PF S NST I++LI HWSKLK T+P++++ LFNS+A P LI
Sbjct: 31 PFSSPNSTYTTPNSHTFDTPTISQLIAKQHWSKLKTIVKETNPSSLLQHLFNSEAQPDLI 90
Query: 47 LRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALS 106
L YF W+ KE A H++ RLLH L AK Y KIR+ L F KN +++ STIFH+LS
Sbjct: 91 LCYFKWTQKEFGAIHNVEQFCRLLHLLANAKNYNKIRALLDSFAKNAHYSN-STIFHSLS 149
Query: 107 TCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGK 166
C NSII+DML+ AYVKN + L E F RAGDYG + S LSCN +L +LVKEG+
Sbjct: 150 VLGSWGCANSIIVDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGR 209
Query: 167 FEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNI 226
VE VYKEM RRRI +N+ +F+ V+NGLCK GK KA D++EDMK+ G SP V+TYN
Sbjct: 210 IGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNT 269
Query: 227 LIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMG 286
+IDGYCK G KM+KADA+ K+MV I PNE+TFN LIDGFC+DEN++AA KVFEEM
Sbjct: 270 IIDGYCKAG---KMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQ 326
Query: 287 SHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVE 346
G+ VVTYNSLINGLC +GKLDEA+ L+D+M GLKPNVVT NALINGFCKKK+++
Sbjct: 327 RQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLK 386
Query: 347 KARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLI 406
+AR + DDI ++GL+P+VIT+NTLIDAY K GRM+DAF +R+ MLD GV P+VSTYNCLI
Sbjct: 387 EAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLI 446
Query: 407 AGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKE 466
G REGNV+ R + E+ NG++A LVTYNILV ALCK G+++KAV LLDEM MEK+
Sbjct: 447 VGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMTLMEKK 506
Query: 467 KKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMMEKGFIPDI 526
+ NIVTYNVLIKGFC KGKLE+AN LLNE+LEKGLIPN+TTY I+R+EMMEKGFIPDI
Sbjct: 507 GRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRDEMMEKGFIPDI 566
Query: 527 EGHMYNISGTS 537
+GH+YN+S +S
Sbjct: 567 DGHLYNVSISS 577
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/566 (57%), Positives = 411/566 (72%), Gaps = 37/566 (6%)
Query: 8 TIEDITELIRNHHWSKLKN----TDPNTVILQLFNSDADPVLILRYFCWSTKELRASHSL 63
+I I+EL+ HWS+LK T P T + QL N+ D L+LR+F WS KE R S+ L
Sbjct: 19 SIPTISELLSKQHWSELKPHLRVTKPATFLDQLLNAGVDSELVLRFFKWSQKEYRLSYGL 78
Query: 64 LLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLM 123
T ++LH L +K+Y K+RSFL FVKN K T VS++FH+L ++IIDML+
Sbjct: 79 EPTSKVLHFLANSKRYSKVRSFLDSFVKNEKHT-VSSVFHSLLLDGGRPGATALIIDMLV 137
Query: 124 LAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIE 183
LAYVKN++ H +EAF RA DYG K S+ SCN LL ALVKE K DVEYVYKEM +RRI
Sbjct: 138 LAYVKNLELHCAYEAFTRAKDYGFKLSLTSCNPLLSALVKENKIGDVEYVYKEMIKRRIH 197
Query: 184 LNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKA 243
NL++FN +NGLC+AGKLNKA D +EDMK+ G+SP VVTYN L+DGYCK+G GKMYKA
Sbjct: 198 TNLNTFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKA 257
Query: 244 DAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLING 303
+A K+M+ N I PNEVTFNTLIDGFCKDEN++AA K FEEM G+ +VTYNSLING
Sbjct: 258 EAFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLING 317
Query: 304 LCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPS 363
LC +GKL+EA+ L D+M+ GLKPN+VT NALINGFCKKK++++A +FDD+S+Q L P+
Sbjct: 318 LCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPN 377
Query: 364 VITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMN 423
VIT+NT+IDAYCKEG ME+ F++ +SMLD G+LP+VSTYNCLIAGL R+ +++ + ++N
Sbjct: 378 VITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLN 437
Query: 424 ELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMF---------------------- 461
E+ N G++ +VTYNIL+ LCK+ KS+ A LL+EMF
Sbjct: 438 EMENKGLKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEG 497
Query: 462 ----------KMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQ 511
+MEKE+K PN+VTYNVLIKG+C+ KLE ANGLLNE+LEKGL PN+TTY
Sbjct: 498 KLKAALNVRTRMEKERKQPNVVTYNVLIKGYCKINKLEAANGLLNEMLEKGLNPNRTTYD 557
Query: 512 IVREEMMEKGFIPDIEGHMYNISGTS 537
IVR EM+EKGF PDIEGH+YNIS S
Sbjct: 558 IVRLEMLEKGFSPDIEGHLYNISSMS 583
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein At1g09820-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/583 (57%), Positives = 413/583 (70%), Gaps = 50/583 (8%)
Query: 1 PFCSANST----------IEDITELIRNHHWSKLKN----TDPNTVILQLFNSDADPVLI 46
PF S NST I++LI HWSKLK T+P++++ LFNS+A P LI
Sbjct: 31 PFSSPNSTYTTPNSHTFDTPTISQLIAKQHWSKLKTIVKETNPSSLLQHLFNSEAQPDLI 90
Query: 47 LRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALS 106
L YF W+ KE A H++ RLLH L AK Y KIR+ L F KN +++ STIFH+LS
Sbjct: 91 LCYFKWTQKEFGAIHNVEQFCRLLHLLANAKNYNKIRALLDSFAKNAHYSN-STIFHSLS 149
Query: 107 TCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGK 166
C NSII+DML+ AYVKN + L E F RAGDYG + S LSCN +L +LVKEG+
Sbjct: 150 VLGSWGCANSIIVDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSCNPMLVSLVKEGR 209
Query: 167 FEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNI 226
VE VYKEM RRRI +N+ +F+ V+NGLCK GK KA D++EDMK+ G SP V+TYN
Sbjct: 210 IGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKAWGFSPSVITYNT 269
Query: 227 LIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMG 286
+IDGYCK G KM+KADA+ K+MV I PNE+TFN LIDGFC+DEN++AA KVFEEM
Sbjct: 270 IIDGYCKAG---KMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKVFEEMQ 326
Query: 287 SHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVE 346
G+ VVTYNSLINGLC +GKLDEA+ L+D+M GLKPNVVT NALINGFCKKK+++
Sbjct: 327 RQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLK 386
Query: 347 KARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLI 406
+AR + DDI ++GL+P+VIT+NTLIDAY K GRM+DAF +R+ MLD GV P+VSTYNCLI
Sbjct: 387 EAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLI 446
Query: 407 AGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFK---- 462
G REGNV+ R + E+ NG++A LVTYNILV ALCK G+++KAV LLDEMF+
Sbjct: 447 VGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGLN 506
Query: 463 ----------------------------MEKEKKWPNIVTYNVLIKGFCQKGKLEDANGL 494
MEK+ + NIVTYNVLIKGFC KGKLE+AN L
Sbjct: 507 PSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRL 566
Query: 495 LNELLEKGLIPNQTTYQIVREEMMEKGFIPDIEGHMYNISGTS 537
LNE+LEKGLIPN+TTY I+R+EMMEKGFIPDI+GH+YN+S +S
Sbjct: 567 LNEMLEKGLIPNRTTYDILRDEMMEKGFIPDIDGHLYNVSISS 609
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356538593|ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09820-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 647 bits (1670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/566 (57%), Positives = 403/566 (71%), Gaps = 37/566 (6%)
Query: 8 TIEDITELIRNHHWSKLK----NTDPNTVILQLFNSDADPVLILRYFCWSTKELRASHSL 63
+I I+EL+ N HWS+LK T P + QLFN+ D L+LR+F WS KE R S+ L
Sbjct: 19 SISTISELLSNQHWSELKPHFRTTKPAIFLDQLFNAGVDSELVLRFFQWSQKEFRISYGL 78
Query: 64 LLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLM 123
TG++LH L +KKY K+RSFL VKN K T VS++FH+L D C N++I DML+
Sbjct: 79 ETTGKVLHLLANSKKYSKVRSFLDKLVKNEKHT-VSSVFHSLLLGGDRPCANALITDMLV 137
Query: 124 LAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIE 183
LAYV N++ H E F+R DYG K S+ SCN LL ALVK + +++YVYKEM +RRI+
Sbjct: 138 LAYVTNLEIHSACEVFRRVQDYGFKLSLNSCNPLLSALVKGNETGEMQYVYKEMIKRRIQ 197
Query: 184 LNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKA 243
NL +FN +NGLCKAGKLNKA D++ED+K+ G SP +VTYN LIDG+CKKG GKMY+A
Sbjct: 198 PNLTTFNIFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKKGSAGKMYRA 257
Query: 244 DAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLING 303
DA+ K+M+ N I PNE+TFNTLIDGFCKDEN+ AA FEEM G+ +VTYNSLING
Sbjct: 258 DAILKEMLANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLING 317
Query: 304 LCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPS 363
L +GKLDEA+AL D+M+ GLKPN+VT NALINGFCKKK++++AR LFDDI+EQ L P+
Sbjct: 318 LSNNGKLDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPN 377
Query: 364 VITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMN 423
IT+NT+IDA+CK G ME+ FA+ NSMLD G+ P+VSTYNCLIAGL R NV + ++N
Sbjct: 378 AITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLN 437
Query: 424 ELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMF---------------------- 461
E+ N ++A +VTYNIL+G CKDG+ KA LL EM
Sbjct: 438 EMENYELKADVVTYNILIGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCMEG 497
Query: 462 ----------KMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQ 511
+MEKE K N+VTYNVLIKGFC+ GKLEDAN LLNE+LEKGL PN+TTY
Sbjct: 498 NLKAALKVRTQMEKEGKRANVVTYNVLIKGFCKTGKLEDANRLLNEMLEKGLNPNRTTYD 557
Query: 512 IVREEMMEKGFIPDIEGHMYNISGTS 537
+VR EM+EKGFIPDIEGH+YNIS S
Sbjct: 558 VVRLEMLEKGFIPDIEGHLYNISSMS 583
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15218284|ref|NP_172453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75276860|sp|O04504.1|PPR27_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09820 gi|2160173|gb|AAB60736.1| Similar to N. tabacum salt-inducible protein (gb|U08285) [Arabidopsis thaliana] gi|332190378|gb|AEE28499.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust.
Identities = 301/584 (51%), Positives = 398/584 (68%), Gaps = 50/584 (8%)
Query: 2 FCSANSTIED-----------ITELIRNHHWSKL----KNTDPNTVILQLFNSDADPVLI 46
CS++STI I +LI HWSKL + +PN + QL +S+ DP L
Sbjct: 25 LCSSSSTITGSPCPPRYDVAVIADLIEKQHWSKLGVHVTDINPNELFRQLISSELDPDLC 84
Query: 47 LRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALS 106
LRY+ W K S SL LT +LLHSL AK+Y KIRSFL FV+NG V +IFHA+S
Sbjct: 85 LRYYSWLVKNSDISVSLELTFKLLHSLANAKRYSKIRSFLDGFVRNGSDHQVHSIFHAIS 144
Query: 107 TCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGK 166
C D++C NSII DML+LAY N + LGFEAFKR+G YG K S LSC L+ AL+KE +
Sbjct: 145 MC-DNVCVNSIIADMLVLAYANNSRFELGFEAFKRSGYYGYKLSALSCKPLMIALLKENR 203
Query: 167 FEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNI 226
DVEYVYKEM RR+I+ N+ +FN V+N LCK GK+NKA D+MEDMK G SP VV+YN
Sbjct: 204 SADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNT 263
Query: 227 LIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMG 286
LIDGYCK GG GKMYKADAV K+MVEN + PN TFN LIDGF KD+N+ +MKVF+EM
Sbjct: 264 LIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEML 323
Query: 287 SHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVE 346
+ V++YNSLINGLC GK+ EA+++RD+M+++G++PN++T NALINGFCK +++
Sbjct: 324 DQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLK 383
Query: 347 KARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLI 406
+A +F + QG P+ YN LIDAYCK G+++D FA++ M G++PDV TYNCLI
Sbjct: 384 EALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLI 443
Query: 407 AGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFK---- 462
AGL R GN+E + + ++L + G+ LVT++IL+ C+ G+S+KA LL EM K
Sbjct: 444 AGLCRNGNIEAAKKLFDQLTSKGL-PDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLK 502
Query: 463 ----------------------------MEKEKKWP-NIVTYNVLIKGFCQKGKLEDANG 493
MEKE++ N+ +YNVL++G+ QKGKLEDAN
Sbjct: 503 PRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANM 562
Query: 494 LLNELLEKGLIPNQTTYQIVREEMMEKGFIPDIEGHMYNISGTS 537
LLNE+LEKGL+PN+ TY+IV+EEM+++GF+PDIEGH++N+S S
Sbjct: 563 LLNEMLEKGLVPNRITYEIVKEEMVDQGFVPDIEGHLFNVSTKS 606
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297849294|ref|XP_002892528.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297338370|gb|EFH68787.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 588 bits (1516), Expect = e-165, Method: Compositional matrix adjust.
Identities = 295/572 (51%), Positives = 394/572 (68%), Gaps = 39/572 (6%)
Query: 3 CSANSTIEDITELIRNHHWSKL----KNTDPNTVILQLFNSDADPVLILRYFCWSTKELR 58
C + I +LI HWSKL K+ +PN + QL +S+ +P L LRY+ W K
Sbjct: 37 CPPRFDVAVIADLIEKQHWSKLGFHVKDINPNELFRQLISSELNPDLCLRYYTWLVKNRD 96
Query: 59 ASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSII 118
S SL LT +LLHSL AK+Y KIRSFL FV+NG V +IFHA+S C D++C NSII
Sbjct: 97 ISVSLELTFKLLHSLANAKRYSKIRSFLDGFVRNGSDHQVHSIFHAISMC-DNVCVNSII 155
Query: 119 IDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMK 178
DML+LAY N + LGFEAFKR+G YG K S +SC L+ AL+K+ + DVEY+YKEM
Sbjct: 156 ADMLVLAYANNSRFELGFEAFKRSGYYGYKLSAMSCKPLMVALLKQNRSADVEYLYKEMI 215
Query: 179 RRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIG 238
RR+I+ N+ +FN V+N LCK GK+NKA D+MEDMK G SP VV+YN LIDGYCK GG G
Sbjct: 216 RRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYCKLGGNG 275
Query: 239 KMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYN 298
KMYKADAV K+MVEN + PN TFN LIDGF KD+N+ ++KVF+EM + V+TYN
Sbjct: 276 KMYKADAVLKEMVENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYN 335
Query: 299 SLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQ 358
SLINGLC GK++EA+ +RD+M+++G++PN++T ++LINGFCK ++++A +FD + Q
Sbjct: 336 SLINGLCNGGKINEAIGMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQ 395
Query: 359 GLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGV 418
G P+ YN LIDAYCK G+++D FA++ M G++PDV TYNCLIAGL R GN+E
Sbjct: 396 GTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAA 455
Query: 419 RNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFK---------------- 462
+ + ++L N G+ LVT++IL+ C G+S+KA LL EM K
Sbjct: 456 KKLFDQLTNKGL-PDLVTFHILMEGYCSRGESRKAAMLLKEMSKMGLKPRHLTYNIMMKG 514
Query: 463 ----------------MEKEKKWP-NIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIP 505
MEKE++ N+ +YNVL++G+ QKGKLEDAN LLNE+LEKGL+P
Sbjct: 515 YCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVP 574
Query: 506 NQTTYQIVREEMMEKGFIPDIEGHMYNISGTS 537
N+ TY+IV+EEM++KGF+PDIEGH++N+S S
Sbjct: 575 NRITYEIVKEEMVDKGFVPDIEGHLFNVSTKS 606
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 575 bits (1483), Expect = e-161, Method: Compositional matrix adjust.
Identities = 284/465 (61%), Positives = 347/465 (74%), Gaps = 32/465 (6%)
Query: 105 LSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKE 164
LS DS C NSII+D+L+ AY KN++ LGFEAFKRA DYGLK SV SCN L+ LVK
Sbjct: 82 LSVSGDSFCANSIIVDILVWAYAKNLRTRLGFEAFKRASDYGLKLSVTSCNPLMSGLVKV 141
Query: 165 GKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTY 224
G+ D+E+VYKEM RRRIE L SFN V+NGLCK GKLNKA DI+EDMK GVS V+TY
Sbjct: 142 GEIGDMEFVYKEMIRRRIEPTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITY 201
Query: 225 NILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEE 284
N LIDGYCK G IGKMYKADA+ K+M +GI PNEVTFN LIDGFCKD+N+SAAMKVF E
Sbjct: 202 NTLIDGYCKMGKIGKMYKADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAE 261
Query: 285 MGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKL 344
M G+ VVTYNSLINGLC +GK++EA ALRD+M+ S LKPN++T NAL+NGFCK K+
Sbjct: 262 MNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKM 321
Query: 345 VEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNC 404
V++A LFDD+ +QG++P+V TYN LIDAYCK+ MEDAFA+ ML +GV PDVSTYNC
Sbjct: 322 VKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNC 381
Query: 405 LIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFK-- 462
LIAGL R+G++E RN+++E+ ++A L+TYNIL+ +LC G+ KKA+ LLDEM +
Sbjct: 382 LIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKG 441
Query: 463 ------------------------------MEKEKKWPNIVTYNVLIKGFCQKGKLEDAN 492
MEK + N+ TYNVLIKGFC+K KLEDAN
Sbjct: 442 LKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANVATYNVLIKGFCKKDKLEDAN 501
Query: 493 GLLNELLEKGLIPNQTTYQIVREEMMEKGFIPDIEGHMYNISGTS 537
GLLNE+LEKGLIPN+ TY+IV EEMMEKGF+PDIEGH+Y ++ +S
Sbjct: 502 GLLNEMLEKGLIPNRMTYEIVTEEMMEKGFVPDIEGHLYKVAVSS 546
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357140697|ref|XP_003571900.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09820-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 216/484 (44%), Positives = 304/484 (62%), Gaps = 40/484 (8%)
Query: 79 YPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEA 138
+P +RS LH + S ++I AL S L I D+L+LA +P +EA
Sbjct: 82 HPLLRSELHALAA-ARLHSPASIVRALPASSSPL-----IADLLVLALASASQPLASYEA 135
Query: 139 FKRAGDYGLK--SSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGL 196
F AGD + S S N+LL ALV + + E +K RRR+ +L +FN V++GL
Sbjct: 136 FLLAGDAHPRHRPSAFSVNRLLSALVAAERVDLAERAFKAALRRRVSPDLFTFNIVISGL 195
Query: 197 CKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGIL 256
CK G+L KA D+ +D+++ G++P VVTYN +IDGYCK+G G+MY DA+ K+MVE GI
Sbjct: 196 CKTGQLRKAGDVAKDIRAWGLAPSVVTYNTIIDGYCKRGRAGRMYHVDALLKEMVEAGIS 255
Query: 257 PNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVAL 316
PNEVTFN L++G+CKD N +AA++VFEEM GIAA VVTY++L+ GLC +GK++E V L
Sbjct: 256 PNEVTFNVLVNGYCKDSNTAAAVRVFEEMKQQGIAASVVTYSALVWGLCSEGKVEEGVKL 315
Query: 317 RDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCK 376
DEM GL PN+ T N+++NGFCKK ++ A D + ++ + P+V+TY L+D Y +
Sbjct: 316 VDEMKDLGLVPNLATLNSVLNGFCKKGMMTDAEGWIDSMEQKNVKPNVVTYTILVDGYRR 375
Query: 377 EGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVT 436
+M+DA A++ +M +GV P+ YNCLIAG +R G+ V +++E+ G+RA +VT
Sbjct: 376 LDKMKDALAVKEAMSGKGVRPNARIYNCLIAGFTRNGDWRSVSGLLDEMRMKGVRADIVT 435
Query: 437 YNILVGALCKDGKSKKAVSLLDEMF--------------------------------KME 464
YN+L+GALC G+ +KAV LLDEM +ME
Sbjct: 436 YNVLIGALCVKGEVRKAVKLLDEMLMVGLEPVHLTYNTIINGYCEKGNIKSAYEIRTRME 495
Query: 465 KEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMMEKGFIP 524
K KK N+VTYNV IK C+ GK+E+ N LLNE+LEKGL+PN TY ++E MMEKG+ P
Sbjct: 496 KGKKRANVVTYNVFIKCLCRMGKMEETNELLNEMLEKGLVPNGVTYDTIKEGMMEKGYTP 555
Query: 525 DIEG 528
D+ G
Sbjct: 556 DVRG 559
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 537 | ||||||
| TAIR|locus:2024301 | 606 | AT1G09820 "AT1G09820" [Arabido | 0.964 | 0.854 | 0.486 | 4.4e-132 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.929 | 0.668 | 0.293 | 5e-60 | |
| TAIR|locus:2139732 | 566 | AT4G11690 [Arabidopsis thalian | 0.757 | 0.719 | 0.319 | 2.2e-59 | |
| TAIR|locus:2077061 | 619 | AT3G22470 "AT3G22470" [Arabido | 0.709 | 0.615 | 0.337 | 6.6e-58 | |
| TAIR|locus:2019085 | 763 | AT1G74580 "AT1G74580" [Arabido | 0.815 | 0.574 | 0.303 | 9.6e-57 | |
| TAIR|locus:2053552 | 627 | AT2G15630 "AT2G15630" [Arabido | 0.795 | 0.681 | 0.309 | 2.5e-56 | |
| TAIR|locus:2177028 | 816 | AT5G12100 [Arabidopsis thalian | 0.834 | 0.549 | 0.313 | 7.1e-56 | |
| TAIR|locus:2024296 | 598 | AT1G09900 "AT1G09900" [Arabido | 0.668 | 0.600 | 0.317 | 1.1e-55 | |
| TAIR|locus:2015208 | 630 | AT1G63130 [Arabidopsis thalian | 0.685 | 0.584 | 0.333 | 3.7e-55 | |
| TAIR|locus:2083976 | 754 | MEE40 "maternal effect embryo | 0.694 | 0.494 | 0.339 | 3.7e-55 |
| TAIR|locus:2024301 AT1G09820 "AT1G09820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1295 (460.9 bits), Expect = 4.4e-132, P = 4.4e-132
Identities = 257/528 (48%), Positives = 347/528 (65%)
Query: 3 CSANSTIEDITELIRNHHWSKL--KNTD--PNTVILQLFNSDADPVLILRYFCWSTKELR 58
C + I +LI HWSKL TD PN + QL +S+ DP L LRY+ W K
Sbjct: 37 CPPRYDVAVIADLIEKQHWSKLGVHVTDINPNELFRQLISSELDPDLCLRYYSWLVKNSD 96
Query: 59 AXXXXXXXXXXXXXXVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSII 118
AK+Y KIRSFL FV+NG V +IFHA+S C D++C NSII
Sbjct: 97 ISVSLELTFKLLHSLANAKRYSKIRSFLDGFVRNGSDHQVHSIFHAISMC-DNVCVNSII 155
Query: 119 IDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMK 178
DML+LAY N + LGFEAFKR+G YG K S LSC L+ AL+KE + DVEYVYKEM
Sbjct: 156 ADMLVLAYANNSRFELGFEAFKRSGYYGYKLSALSCKPLMIALLKENRSADVEYVYKEMI 215
Query: 179 RRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIG 238
RR+I+ N+ +FN V+N LCK GK+NKA D+MEDMK G SP VV+YN LIDGYCK GG G
Sbjct: 216 RRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNG 275
Query: 239 KMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYN 298
KMYKADAV K+MVEN + PN TFN LIDGF KD+N+ +MKVF+EM + V++YN
Sbjct: 276 KMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYN 335
Query: 299 SLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQ 358
SLINGLC GK+ EA+++RD+M+++G++PN++T NALINGFCK ++++A +F + Q
Sbjct: 336 SLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQ 395
Query: 359 GLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGV 418
G P+ YN LIDAYCK G+++D FA++ M G++PDV TYNCLIAGL R GN+E
Sbjct: 396 GAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAA 455
Query: 419 RNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVL 478
+ + ++L + G+ LVT++IL+ C+ G+S+KA LL EM KM + P +TYN++
Sbjct: 456 KKLFDQLTSKGL-PDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLK---PRHLTYNIV 511
Query: 479 IKGFCQKGKLEDAXXXXXXXXXXXXIP-NQTTYQIVREEMMEKGFIPD 525
+KG+C++G L+ A + N +Y ++ + +KG + D
Sbjct: 512 MKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLED 559
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
Identities = 155/529 (29%), Positives = 270/529 (51%)
Query: 3 CSANSTIEDITELIRNHHWSKLKNTDPNTVILQLFNSDADPVLILRYFCWSTKELRAXXX 62
C + S++ D+ +++++ S+L D I+ L + +L Y +R+
Sbjct: 130 CYSTSSVFDL--VVKSY--SRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRN 185
Query: 63 XXXXXXXXXXXVVAKKYPKIRSF---LHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIII 119
+ ++ P + ++ + F G T+F + T N +
Sbjct: 186 ISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMET--KGCLPNVVTY 243
Query: 120 DMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKR 179
+ L+ Y K K GF+ + GL+ +++S N ++ L +EG+ ++V +V EM R
Sbjct: 244 NTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNR 303
Query: 180 RRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGK 239
R L+ ++N ++ G CK G ++A + +M G++P V+TY LI CK G
Sbjct: 304 RGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGN--- 360
Query: 240 MYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNS 299
M +A M G+ PNE T+ TL+DGF + ++ A +V EM +G + VVTYN+
Sbjct: 361 MNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNA 420
Query: 300 LINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQG 359
LING CV GK+++A+A+ ++M GL P+VV+ + +++GFC+ V++A + ++ E+G
Sbjct: 421 LINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKG 480
Query: 360 LSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVR 419
+ P ITY++LI +C++ R ++A + ML G+ PD TY LI EG++E
Sbjct: 481 IKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKAL 540
Query: 420 NIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTY---- 475
+ NE+V G+ +VTY++L+ L K ++++A LL ++F E+ P+ VTY
Sbjct: 541 QLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFY---EESVPSDVTYHTLI 597
Query: 476 ----NV-------LIKGFCQKGKLEDAXXXXXXXXXXXXIPNQTTYQIV 513
N+ LIKGFC KG + +A P+ T Y I+
Sbjct: 598 ENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIM 646
|
|
| TAIR|locus:2139732 AT4G11690 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 609 (219.4 bits), Expect = 2.2e-59, P = 2.2e-59
Identities = 133/416 (31%), Positives = 222/416 (53%)
Query: 95 FTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSC 154
FTS S++ H L+ S + + ++++ +YV++ +L F D G
Sbjct: 75 FTS-SSLLHYLTESETSKTKFRLY-EVIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCF 132
Query: 155 NQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKS 214
N LL +V F + E K + + L++ SF ++ G C+AG++ K+ D++ ++
Sbjct: 133 NYLLTFVVGSSSFNQWWSFFNENKSK-VVLDVYSFGILIKGCCEAGEIEKSFDLLIELTE 191
Query: 215 LGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDEN 274
G SP VV Y LIDG CKKG I K A +F +M + G++ NE T+ LI+G K+
Sbjct: 192 FGFSPNVVIYTTLIDGCCKKGEIEK---AKDLFFEMGKLGLVANERTYTVLINGLFKNGV 248
Query: 275 ISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNA 334
+++E+M G+ + TYN ++N LC DG+ +A + DEM G+ N+VT N
Sbjct: 249 KKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNT 308
Query: 335 LINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRG 394
LI G C++ + +A + D + G++P++ITYNTLID +C G++ A ++ + RG
Sbjct: 309 LIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRG 368
Query: 395 VLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAV 454
+ P + TYN L++G R+G+ G ++ E+ G++ VTY IL+ + +KA+
Sbjct: 369 LSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAI 428
Query: 455 SLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDAXXXXXXXXXXXXIPNQTTY 510
L ME+ P++ TY+VLI GFC KG++ +A PN+ Y
Sbjct: 429 QL---RLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIY 481
|
|
| TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
Identities = 131/388 (33%), Positives = 209/388 (53%)
Query: 141 RAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAG 200
R +YG + ++ +L L K G ++++M+ R I+ ++ ++ V++ LCK G
Sbjct: 200 RMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDG 259
Query: 201 KLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEV 260
+ A + +M+ G+ VVTY+ LI G C G K + ++M+ I+P+ V
Sbjct: 260 SFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDG---KWDDGAKMLREMIGRNIIPDVV 316
Query: 261 TFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEM 320
TF+ LID F K+ + A +++ EM + GIA +TYNSLI+G C + L EA + D M
Sbjct: 317 TFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLM 376
Query: 321 MASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRM 380
++ G +P++VT + LIN +CK K V+ LF +IS +GL P+ ITYNTL+ +C+ G++
Sbjct: 377 VSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKL 436
Query: 381 EDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNIL 440
A + M+ RGV P V TY L+ GL G + I ++ + M G+ YNI+
Sbjct: 437 NAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNII 496
Query: 441 VGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDAXXXXXXXXX 500
+ +C K A SL + +K K P++VTYNV+I G C+KG L +A
Sbjct: 497 IHGMCNASKVDDAWSLFCSL--SDKGVK-PDVVTYNVMIGGLCKKGSLSEADMLFRKMKE 553
Query: 501 XXXIPNQTTYQI-VREEMMEKGFIPDIE 527
P+ TY I +R + G I +E
Sbjct: 554 DGCTPDDFTYNILIRAHLGGSGLISSVE 581
|
|
| TAIR|locus:2019085 AT1G74580 "AT1G74580" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
Identities = 137/452 (30%), Positives = 235/452 (51%)
Query: 80 PKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLA--YVKNMKPHLGFE 137
P + SF K + L+ S C +++ ++ Y +N K G+E
Sbjct: 144 PDVYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAE-GYE 202
Query: 138 AFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLC 197
F + G+ + + N+LLR L K+G ++ E + ++ +R + NL ++N + GLC
Sbjct: 203 LFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLC 262
Query: 198 KAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILP 257
+ G+L+ A ++ + G P V+TYN LI G CK K +A+ MV G+ P
Sbjct: 263 QRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNS---KFQEAEVYLGKMVNEGLEP 319
Query: 258 NEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALR 317
+ T+NTLI G+CK + A ++ + +G TY SLI+GLC +G+ + A+AL
Sbjct: 320 DSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALF 379
Query: 318 DEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKE 377
+E + G+KPNV+ N LI G + ++ +A L +++SE+GL P V T+N L++ CK
Sbjct: 380 NEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKM 439
Query: 378 GRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTY 437
G + DA + M+ +G PD+ T+N LI G S + +E I++ +++NG+ + TY
Sbjct: 440 GCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTY 499
Query: 438 NILVGALCKDGKSKKAVSLLDEMFKMEKEKKW-PNIVTYNVLIKGFCQKGKLEDAXXXXX 496
N L+ LCK K + + E +K EK PN+ T+N+L++ C+ KL++A
Sbjct: 500 NSLLNGLCKTSKFEDVM----ETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLE 555
Query: 497 XXXXXXXIPNQTTYQIVREEMMEKGFIPDIEG 528
P+ T+ + + + G D++G
Sbjct: 556 EMKNKSVNPDAVTFGTLIDGFCKNG---DLDG 584
|
|
| TAIR|locus:2053552 AT2G15630 "AT2G15630" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
Identities = 137/443 (30%), Positives = 223/443 (50%)
Query: 79 YPKIRSFLHMFVKNGKFTSVST--IFHALSTCSDSLCRNSIIIDMLMLAYVKN--MKPHL 134
YPK + H+ + + +F+A + N ++++ K +K
Sbjct: 187 YPKTETCNHILTLLSRLNRIENAWVFYA-DMYRMEIKSNVYTFNIMINVLCKEGKLKKAK 245
Query: 135 GFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLN 194
GF +G+K ++++ N L++ G+ E + EMK + + ++ ++N +L+
Sbjct: 246 GFLGIMEV--FGIKPTIVTYNTLVQGFSLRGRIEGARLIISEMKSKGFQPDMQTYNPILS 303
Query: 195 GLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENG 254
+C G+ AS+++ +MK +G+ P V+YNILI G C G +M A A +MV+ G
Sbjct: 304 WMCNEGR---ASEVLREMKEIGLVPDSVSYNILIRG-CSNNGDLEM--AFAYRDEMVKQG 357
Query: 255 ILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAV 314
++P T+NTLI G + I AA + E+ GI VTYN LING C G +A
Sbjct: 358 MVPTFYTYNTLIHGLFMENKIEAAEILIREIREKGIVLDSVTYNILINGYCQHGDAKKAF 417
Query: 315 ALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAY 374
AL DEMM G++P T +LI C+K +A LF+ + +G+ P ++ NTL+D +
Sbjct: 418 ALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGH 477
Query: 375 CKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGL 434
C G M+ AF++ M + PD TYNCL+ GL EG E R +M E+ G++
Sbjct: 478 CAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEEARELMGEMKRRGIKPDH 537
Query: 435 VTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDAXXX 494
++YN L+ K G +K A + DEM + P ++TYN L+KG + + E A
Sbjct: 538 ISYNTLISGYSKKGDTKHAFMVRDEMLSLGFN---PTLLTYNALLKGLSKNQEGELAEEL 594
Query: 495 XXXXXXXXXIPNQTTYQIVREEM 517
+PN +++ V E M
Sbjct: 595 LREMKSEGIVPNDSSFCSVIEAM 617
|
|
| TAIR|locus:2177028 AT5G12100 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 576 (207.8 bits), Expect = 7.1e-56, P = 7.1e-56
Identities = 144/459 (31%), Positives = 225/459 (49%)
Query: 79 YPKIRSF---LHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLG 135
YP S L VK +F +F L+ + + + A VK G
Sbjct: 141 YPSSDSLTLLLDHLVKTKQFRVTINVF--LNILESDFRPSKFMYGKAIQAAVKLSDVGKG 198
Query: 136 FEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNG 195
E F R + SV N L+ L K + D E ++ EM RR+ +L ++N +++G
Sbjct: 199 LELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDG 258
Query: 196 LCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGI 255
CKAG K+ + E MK+ + P ++T+N L+ G K G + A+ V K+M + G
Sbjct: 259 YCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAGMVED---AENVLKEMKDLGF 315
Query: 256 LPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVA 315
+P+ TF+ L DG+ +E AA+ V+E G+ T + L+N LC +GK+++A
Sbjct: 316 VPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKAEE 375
Query: 316 LRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYC 375
+ MA GL PN V N +I+G+C+K + AR+ + + +QG+ P + YN LI +C
Sbjct: 376 ILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFC 435
Query: 376 KEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLV 435
+ G ME+A N M +GV P V TYN LI G R+ + +I+ E+ +NG +V
Sbjct: 436 ELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVV 495
Query: 436 TYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDAXXXX 495
+Y L+ LCK K +A + +M E P + YN+LI G C KGK+EDA
Sbjct: 496 SYGTLINCLCKGSKLLEAQIVKRDM---EDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFS 552
Query: 496 XXXXXXXXIPNQTTYQIVREEMMEKGFIPDIEGHMYNIS 534
N TY + + + G + + E + IS
Sbjct: 553 KEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEIS 591
|
|
| TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 574 (207.1 bits), Expect = 1.1e-55, P = 1.1e-55
Identities = 117/368 (31%), Positives = 201/368 (54%)
Query: 146 GLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKA 205
G V++ N ++ K G+ + V + R + ++ ++N +L LC +GKL +A
Sbjct: 167 GAVPDVITYNVMISGYCKAGEINNALSV---LDRMSVSPDVVTYNTILRSLCDSGKLKQA 223
Query: 206 SDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTL 265
++++ M P V+TY ILI+ C+ G+G K + +M + G P+ VT+N L
Sbjct: 224 MEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMK---LLDEMRDRGCTPDVVTYNVL 280
Query: 266 IDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGL 325
++G CK+ + A+K +M S G V+T+N ++ +C G+ +A L +M+ G
Sbjct: 281 VNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGF 340
Query: 326 KPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFA 385
P+VVT N LIN C+K L+ +A + + + + G P+ ++YN L+ +CKE +M+ A
Sbjct: 341 SPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIE 400
Query: 386 MRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALC 445
M+ RG PD+ TYN ++ L ++G VE I+N+L + G L+TYN ++ L
Sbjct: 401 YLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLA 460
Query: 446 KDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDAXXXXXXXXXXXXIP 505
K GK+ KA+ LLDEM K+ K P+ +TY+ L+ G ++GK+++A P
Sbjct: 461 KAGKTGKAIKLLDEM--RAKDLK-PDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRP 517
Query: 506 NQTTYQIV 513
N T+ +
Sbjct: 518 NAVTFNSI 525
|
|
| TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
Identities = 125/375 (33%), Positives = 203/375 (54%)
Query: 146 GLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKA 205
G + +++ ++ L K G + + K+M++ +IE + +N +++ LC +N A
Sbjct: 216 GCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDA 275
Query: 206 SDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTL 265
++ +M + G+ P VVTYN LI C G+ A + DM+E I PN VTF+ L
Sbjct: 276 LNLFTEMDNKGIRPNVVTYNSLIRCLCN---YGRWSDASRLLSDMIERKINPNVVTFSAL 332
Query: 266 IDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGL 325
ID F K+ + A K+++EM I + TY+SLING C+ +LDEA + + M++
Sbjct: 333 IDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDC 392
Query: 326 KPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFA 385
PNVVT N LI GFCK K V++ LF ++S++GL + +TY TLI + + ++A
Sbjct: 393 FPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQI 452
Query: 386 MRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALC 445
+ M+ GVLPD+ TY+ L+ GL G VE + L + M + TYNI++ +C
Sbjct: 453 VFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMC 512
Query: 446 KDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDAXXXXXXXXXXXXIP 505
K GK + L + ++ K PN+VTY ++ GFC+KG E+A +P
Sbjct: 513 KAGKVEDGWDLFCSL-SLKGVK--PNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLP 569
Query: 506 NQTTYQ-IVREEMME 519
+ TY ++R + +
Sbjct: 570 DSGTYNTLIRAHLRD 584
|
|
| TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
Identities = 135/398 (33%), Positives = 213/398 (53%)
Query: 155 NQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKS 214
N L+ L K G + + M + + ++ ++N V++GLCK G++ +A ++++ M +
Sbjct: 299 NTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMIT 358
Query: 215 LGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDEN 274
SP VTYN LI CK+ ++ +A + + + GILP+ TFN+LI G C N
Sbjct: 359 RDCSPNTVTYNTLISTLCKEN---QVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRN 415
Query: 275 ISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNA 334
AM++FEEM S G TYN LI+ LC GKLDEA+ + +M SG +V+T N
Sbjct: 416 HRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNT 475
Query: 335 LINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRG 394
LI+GFCK +A +FD++ G+S + +TYNTLID CK R+EDA + + M+ G
Sbjct: 476 LIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEG 535
Query: 395 VLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAV 454
PD TYN L+ R G+++ +I+ + +NG +VTY L+ LCK G+ + A
Sbjct: 536 QKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVAS 595
Query: 455 SLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDAXXXXXXXXXXXXIP-NQTTYQIV 513
LL + +M+ P+ YN +I+G +K K +A P + +Y+IV
Sbjct: 596 KLLRSI-QMKGINLTPH--AYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIV 652
Query: 514 -----------RE------EMMEKGFIPDIEGHMYNIS 534
RE E++EKGF+P+ +Y ++
Sbjct: 653 FRGLCNGGGPIREAVDFLVELLEKGFVPEFSS-LYMLA 689
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O04504 | PPR27_ARATH | No assigned EC number | 0.5154 | 0.9944 | 0.8811 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 537 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 8e-33 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-26 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 8e-25 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-22 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-21 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-20 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-19 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-18 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-15 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-12 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-12 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-11 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-11 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-10 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 7e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 9e-07 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 6e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 9e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 2e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 3e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.003 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.003 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.004 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 8e-33
Identities = 86/344 (25%), Positives = 162/344 (47%), Gaps = 13/344 (3%)
Query: 186 LDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADA 245
L +FN +++ + ++ A ++ ++ G+ Y LI K G + M++
Sbjct: 437 LSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFE--- 493
Query: 246 VFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLC 305
VF +MV G+ N TF LIDG + ++ A + M S + V +N+LI+
Sbjct: 494 VFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACG 553
Query: 306 VDGKLDEAVALRDEMMASG--LKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPS 363
G +D A + EM A + P+ +T AL+ V++A+ ++ I E + +
Sbjct: 554 QSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGT 613
Query: 364 VITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMN 423
Y +++ ++G + A ++ + M +GV PD ++ L+ G+++ I+
Sbjct: 614 PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673
Query: 424 ELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFC 483
+ G++ G V+Y+ L+GA KKA+ L +++ + K P + T N LI C
Sbjct: 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI---KLRPTVSTMNALITALC 730
Query: 484 QKGKLEDANGLLNELLEKGLIPNQTTYQIV-----REEMMEKGF 522
+ +L A +L+E+ GL PN TY I+ R++ + G
Sbjct: 731 EGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGL 774
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 5e-26
Identities = 88/363 (24%), Positives = 155/363 (42%), Gaps = 43/363 (11%)
Query: 146 GLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKA 205
GLK+ L+ K GK + + V+ EM +E N+ +F +++G +AG++ KA
Sbjct: 467 GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526
Query: 206 SDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENG--ILPNEVTFN 263
M+S V P V +N LI C G G + +A V +M I P+ +T
Sbjct: 527 FGAYGIMRSKNVKPDRVVFNALISA-C--GQSGAVDRAFDVLAEMKAETHPIDPDHITVG 583
Query: 264 TLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMAS 323
L+ + A +V++ + + I Y +N G D A+++ D+M
Sbjct: 584 ALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK 643
Query: 324 GLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDA 383
G+KP+ V +AL++ ++KA + D +QG+ ++Y++L+ A + A
Sbjct: 644 GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKA 703
Query: 384 FAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGA 443
+ + + P VST N LI A
Sbjct: 704 LELYEDIKSIKLRPTVSTMNALIT-----------------------------------A 728
Query: 444 LCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGL 503
LC+ + KA+ +L E M++ PN +TY++L+ +K + LL++ E G+
Sbjct: 729 LCEGNQLPKALEVLSE---MKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGI 785
Query: 504 IPN 506
PN
Sbjct: 786 KPN 788
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 8e-25
Identities = 66/319 (20%), Positives = 143/319 (44%), Gaps = 34/319 (10%)
Query: 122 LMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRR 181
L+ K+ K FE F + G++++V + L+ + G+ Y M+ +
Sbjct: 478 LISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN 537
Query: 182 IELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLG--VSPKVVTYNILIDGYCKKGGIGK 239
++ + FN +++ ++G +++A D++ +MK+ + P +T L+ G + +
Sbjct: 538 VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDR 597
Query: 240 ---MYK-----------------------------ADAVFKDMVENGILPNEVTFNTLID 267
+Y+ A +++ DM + G+ P+EV F+ L+D
Sbjct: 598 AKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVD 657
Query: 268 GFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKP 327
++ A ++ ++ GI G V+Y+SL+ +A+ L +++ + L+P
Sbjct: 658 VAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP 717
Query: 328 NVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMR 387
V T NALI C+ + KA + ++ GL P+ ITY+ L+ A ++ + +
Sbjct: 718 TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLL 777
Query: 388 NSMLDRGVLPDVSTYNCLI 406
+ + G+ P++ C+
Sbjct: 778 SQAKEDGIKPNLVMCRCIT 796
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 1e-22
Identities = 87/370 (23%), Positives = 156/370 (42%), Gaps = 22/370 (5%)
Query: 146 GLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNF-VLNGLCKAGK-LN 203
KS V C+Q+ LV G+ + ++ E+ L + + L C A K +
Sbjct: 83 IRKSGVSLCSQI-EKLVACGRHREALELF-EILEAGCPFTLPASTYDALVEACIALKSIR 140
Query: 204 KASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFN 263
+ ++S G P N ++ + K G + A +F +M E N ++
Sbjct: 141 CVKAVYWHVESSGFEPDQYMMNRVLLMHVK---CGMLIDARRLFDEMPER----NLASWG 193
Query: 264 TLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMAS 323
T+I G N A +F EM G A T+ ++ G L ++ +
Sbjct: 194 TIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKT 253
Query: 324 GLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDA 383
G+ + S ALI+ + K +E AR +FD + E+ + + +N+++ Y G E+A
Sbjct: 254 GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEA 309
Query: 384 FAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGA 443
+ M D GV D T++ +I SR +E + L+ G +V LV
Sbjct: 310 LCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDL 369
Query: 444 LCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGL 503
K G+ + A ++ D M + N++++N LI G+ G+ A + ++ +G+
Sbjct: 370 YSKWGRMEDARNVFDRMPRK-------NLISWNALIAGYGNHGRGTKAVEMFERMIAEGV 422
Query: 504 IPNQTTYQIV 513
PN T+ V
Sbjct: 423 APNHVTFLAV 432
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 96.5 bits (240), Expect = 7e-21
Identities = 90/361 (24%), Positives = 160/361 (44%), Gaps = 35/361 (9%)
Query: 146 GLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKA 205
G V CN L++ + G + + E V+ M+ + + S+ +++G K G +KA
Sbjct: 318 GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKA 373
Query: 206 SDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTL 265
+ M+ VSP +T ++ C +G + + + G++ V N L
Sbjct: 374 LETYALMEQDNVSPDEITIASVLSA-C--ACLGDLDVGVKLHELAERKGLISYVVVANAL 430
Query: 266 IDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGL 325
I+ + K + I A++VF + V+++ S+I GL ++ + EA+ +M+ + L
Sbjct: 431 IEMYSKCKCIDKALEVFHNIPEKD----VISWTSIIAGLRLNNRCFEALIFFRQMLLT-L 485
Query: 326 KPNVVTSNALING-------FCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEG 378
KPN VT A ++ C K++ A VL I G P N L+D Y + G
Sbjct: 486 KPNSVTLIAALSACARIGALMCGKEI--HAHVLRTGIGFDGFLP-----NALLDLYVRCG 538
Query: 379 RMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYN 438
RM A+ NS DV ++N L+ G G + N +V +G+ VT+
Sbjct: 539 RMNYAWNQFNSHEK-----DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTF- 592
Query: 439 ILVGALCKDGKSKKAVSLLDEMFKMEKEKK-WPNIVTYNVLIKGFCQKGKLEDANGLLNE 497
+ LC +S L+ ME++ PN+ Y ++ + GKL +A +N+
Sbjct: 593 --ISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK 650
Query: 498 L 498
+
Sbjct: 651 M 651
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 93.8 bits (233), Expect = 4e-20
Identities = 105/437 (24%), Positives = 187/437 (42%), Gaps = 38/437 (8%)
Query: 56 ELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRN 115
++R S L + + LV ++ + + FT ++ + AL +L
Sbjct: 82 QIRKSGVSLCSQ--IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIAL--K 137
Query: 116 SIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYK 175
SI + +V++ GFE + N++L VK G D ++
Sbjct: 138 SIRCVKAVYWHVESS----GFEPDQYM-----------MNRVLLMHVKCGMLIDARRLFD 182
Query: 176 EMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKG 235
EM R NL S+ ++ GL AG +A + +M G + T+ +++
Sbjct: 183 EMPER----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRA---SA 235
Query: 236 GIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVV 295
G+G + +++ G++ + LID + K +I A VF+ M V
Sbjct: 236 GLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTV 291
Query: 296 TYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDI 355
+NS++ G + G +EA+ L EM SG+ + T + +I F + L+E A+ +
Sbjct: 292 AWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGL 351
Query: 356 SEQGLSPSVITYNT-LIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGN 414
G P I NT L+D Y K GRMEDA RN + DR ++ ++N LIAG G
Sbjct: 352 IRTGF-PLDIVANTALVDLYSKWGRMEDA---RN-VFDRMPRKNLISWNALIAGYGNHGR 406
Query: 415 VEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVT 474
+ ++ G+ VT+ ++ A G S++ + M + + K P +
Sbjct: 407 GTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIK--PRAMH 464
Query: 475 YNVLIKGFCQKGKLEDA 491
Y +I+ ++G L++A
Sbjct: 465 YACMIELLGREGLLDEA 481
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 92.2 bits (229), Expect = 1e-19
Identities = 80/354 (22%), Positives = 145/354 (40%), Gaps = 57/354 (16%)
Query: 152 LSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMED 211
+SC L+ K G ED V+ M + ++N +L G G +A + +
Sbjct: 261 VSCA-LIDMYSKCGDIEDARCVFDGMPEKTTV----AWNSMLAGYALHGYSEEALCLYYE 315
Query: 212 MKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNT-LIDGFC 270
M+ GVS T++I+I + + + A ++ G P ++ NT L+D +
Sbjct: 316 MRDSGVSIDQFTFSIMI-RIFSR--LALLEHAKQAHAGLIRTG-FPLDIVANTALVDLYS 371
Query: 271 KDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVV 330
K + A VF+ M + +++N+LI G G+ +AV + + M+A G+ PN V
Sbjct: 372 KWGRMEDARNVFDRMPRKNL----ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHV 427
Query: 331 TSNALINGFCKKKLVEKARVLFDDISE-QGLSPSVITYNTLIDAYCKEGRMEDAFAMRNS 389
T A+++ L E+ +F +SE + P + Y +I+ +EG +++A+AM
Sbjct: 428 TFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM--- 484
Query: 390 MLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGK 449
+ P V+ + L+ N+E R +L
Sbjct: 485 IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKL------------------------ 520
Query: 450 SKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGL 503
+ M EK + Y VL+ + G+ +A ++ L KGL
Sbjct: 521 -----------YGMGPEK----LNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 78.6 bits (195), Expect = 2e-18
Identities = 30/53 (56%), Positives = 37/53 (69%), Gaps = 3/53 (5%)
Query: 219 PKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCK 271
P VVTYN LIDGYCKKG K+ +A +F +M + GI PN T++ LIDG CK
Sbjct: 1 PDVVTYNTLIDGYCKKG---KVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 75.1 bits (186), Expect = 3e-17
Identities = 27/50 (54%), Positives = 37/50 (74%)
Query: 362 PSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSR 411
P V+TYNTLID YCK+G++E+A + N M RG+ P+V TY+ LI GL +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 72.8 bits (180), Expect = 2e-16
Identities = 26/50 (52%), Positives = 38/50 (76%)
Query: 327 PNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCK 376
P+VVT N LI+G+CKK VE+A LF+++ ++G+ P+V TY+ LID CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 72.4 bits (179), Expect = 2e-16
Identities = 26/49 (53%), Positives = 34/49 (69%)
Query: 257 PNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLC 305
P+ VT+NTLIDG+CK + A+K+F EM GI V TY+ LI+GLC
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 70.5 bits (174), Expect = 1e-15
Identities = 27/48 (56%), Positives = 36/48 (75%)
Query: 294 VVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCK 341
VVTYN+LI+G C GK++EA+ L +EM G+KPNV T + LI+G CK
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 68.6 bits (169), Expect = 5e-15
Identities = 21/46 (45%), Positives = 32/46 (69%)
Query: 188 SFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCK 233
++N +++G CK GK+ +A + +MK G+ P V TY+ILIDG CK
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 1e-14
Identities = 92/399 (23%), Positives = 162/399 (40%), Gaps = 55/399 (13%)
Query: 145 YGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRR-RIELNLDSFNFVLNGLCKAG--- 200
+G + V N L+ VK G V+ M RR I N + NG C G
Sbjct: 216 FGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLEL 275
Query: 201 -----KLNKASDIM------------------EDMKSL----GVSPKVVTYNILIDGYCK 233
+L+ D+M +M G + V N LI Y
Sbjct: 276 FFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLS 335
Query: 234 KGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAG 293
+G +A+ VF M V++ +I G+ K+ A++ + M ++
Sbjct: 336 ---LGSWGEAEKVFSRMETKDA----VSWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388
Query: 294 VVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFD 353
+T S+++ G LD V L + GL VV +NALI + K K ++KA +F
Sbjct: 389 EITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFH 448
Query: 354 DISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREG 413
+I E+ VI++ ++I R +A ML + P+ T ++ +R G
Sbjct: 449 NIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIG 503
Query: 414 NVEGVRNIMNELVNNGMRAGLVTY--NILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPN 471
+ + I ++ G+ G + N L+ + G+ A + F ++ +
Sbjct: 504 ALMCGKEIHAHVLRTGI--GFDGFLPNALLDLYVRCGRMNYAWN----QFNSHEK----D 553
Query: 472 IVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTY 510
+V++N+L+ G+ GK A L N ++E G+ P++ T+
Sbjct: 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTF 592
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 63.2 bits (155), Expect = 5e-13
Identities = 22/50 (44%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
Query: 435 VTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQ 484
VTYN L+ CK GK ++A+ L +EM K + PN+ TY++LI G C+
Sbjct: 4 VTYNTLIDGYCKKGKVEEALKLFNEMKKRGIK---PNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.0 bits (152), Expect = 1e-12
Identities = 23/44 (52%), Positives = 34/44 (77%)
Query: 470 PNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIV 513
P++VTYN LI G+C+KGK+E+A L NE+ ++G+ PN TY I+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSIL 44
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 68.8 bits (168), Expect = 4e-12
Identities = 63/280 (22%), Positives = 108/280 (38%), Gaps = 55/280 (19%)
Query: 297 YNSLINGLCVDGKLDEAVALRDEMMASGL------------------------------- 325
Y N L DG++ + + L ++M GL
Sbjct: 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI 432
Query: 326 -KPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAF 384
P + T N L++ + ++ A + + E GL Y TLI K G+++ F
Sbjct: 433 RNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMF 492
Query: 385 AMRNSMLDRGVLPDVSTYNCLIAGLSREGNVE---GVRNIMNELVNNGMRAGLVTYNILV 441
+ + M++ GV +V T+ LI G +R G V G IM + ++ V +N L+
Sbjct: 493 EVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIM---RSKNVKPDRVVFNALI 549
Query: 442 GALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEK 501
A + G +A +L EM K E P+ +T L+K G+++ A + + E
Sbjct: 550 SACGQSGAVDRAFDVLAEM-KAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608
Query: 502 GLIPNQTTYQI----------------VREEMMEKGFIPD 525
+ Y I + ++M +KG PD
Sbjct: 609 NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD 648
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 2e-11
Identities = 86/387 (22%), Positives = 160/387 (41%), Gaps = 62/387 (16%)
Query: 140 KRAGDYGLK--SSVLSC---------NQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDS 188
KRA + G + S LS N +L V+ G+ YV+ +M R +L S
Sbjct: 99 KRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPER----DLFS 154
Query: 189 FNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFK 248
+N ++ G KAG ++A + M GV P V T+ ++ C GGI + + V
Sbjct: 155 WNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRT-C--GGIPDLARGREVHA 211
Query: 249 DMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDG 308
+V G + N LI + K ++ +A VF+ M +++N++I+G +G
Sbjct: 212 HVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDC----ISWNAMISGYFENG 267
Query: 309 KLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYN 368
+ E + L M + P+++T ++I+ R + + + G + V N
Sbjct: 268 ECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCN 327
Query: 369 TLIDAYCKEGRMEDAFAMRNSMLDR-------------------------------GVLP 397
+LI Y G +A + + M + V P
Sbjct: 328 SLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSP 387
Query: 398 DVSTYNCLIAGLSREGNVE-GVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSL 456
D T +++ + G+++ GV+ ++EL R GL++Y ++ AL + K +
Sbjct: 388 DEITIASVLSACACLGDLDVGVK--LHEL---AERKGLISYVVVANALIEMYSKCKCIDK 442
Query: 457 LDEMFKMEKEKKWPNIVTYNVLIKGFC 483
E+F EK +++++ +I G
Sbjct: 443 ALEVFHNIPEK---DVISWTSIIAGLR 466
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 57.4 bits (140), Expect = 4e-11
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 253 NGILPNEVTFNTLIDGFCKDENISAAMKVFEEM 285
G+ P+ VT+NTLIDG C+ + A+++ +EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 55.8 bits (136), Expect = 1e-10
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 358 QGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSM 390
+GL P V+TYNTLID C+ GR+++A + + M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 2e-10
Identities = 79/362 (21%), Positives = 133/362 (36%), Gaps = 67/362 (18%)
Query: 190 NFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYC--KKGGIGKMYKADAVF 247
N L LC G+L +A ++E M+ L V Y L C K+
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFR-LCEWKRAVEEGSRVCSRAL 113
Query: 248 KDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVD 307
G+ N ++ F + + A VF +M + ++N L+ G
Sbjct: 114 SSHPSLGVRLG----NAMLSMFVRFGELVHAWYVFGKMPER----DLFSWNVLVGGYAKA 165
Query: 308 GKLDEAVALRDEMMASGLKPNVVT-----------------------------------S 332
G DEA+ L M+ +G++P+V T
Sbjct: 166 GYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVV 225
Query: 333 NALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAY-----CKEGRMEDAFAMR 387
NALI + K V AR++FD + + I++N +I Y C EG +E F MR
Sbjct: 226 NALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEG-LELFFTMR 280
Query: 388 NSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKD 447
+D PD+ T +I+ G+ R + +V G + N L+
Sbjct: 281 ELSVD----PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL 336
Query: 448 GKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQ 507
G +A + M E K + V++ +I G+ + G + A + + + P++
Sbjct: 337 GSWGEAEKVFSRM-----ETK--DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE 389
Query: 508 TT 509
T
Sbjct: 390 IT 391
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 1e-09
Identities = 56/271 (20%), Positives = 116/271 (42%), Gaps = 46/271 (16%)
Query: 136 FEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNG 195
FE + A G+K +S + L+ A ++ +Y+++K ++ + + N ++
Sbjct: 669 FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITA 728
Query: 196 LCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGI 255
LC+ +L KA +++ +MK LG+ P +TY+IL+ ++ + + E+GI
Sbjct: 729 LCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA-SERKDDADV--GLDLLSQAKEDGI 785
Query: 256 LPNEVTFNTLIDGFCK------------------------DENISAAMKVFEEMGSHGIA 291
PN V + G C ++ S A+ V+ E I+
Sbjct: 786 KPNLVMCRCIT-GLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRET----IS 840
Query: 292 AGVVTYNSLINGL--CVDGKLDEAVALR----DEMMASGLKPNVVTSNALINGFCKKKLV 345
AG + +++ + C+ +L LR + + S + L++GF +
Sbjct: 841 AGTLPTMEVLSQVLGCL--QLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEYD-- 896
Query: 346 EKARVLFDDISEQGLSPSVITYNT---LIDA 373
+A L ++ + G+ PS +++ +IDA
Sbjct: 897 PRAFSLLEEAASLGVVPS-VSFKKSPIVIDA 926
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.0 bits (126), Expect = 4e-09
Identities = 17/49 (34%), Positives = 33/49 (67%)
Query: 150 SVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCK 198
V++ N L+ K+GK E+ ++ EMK+R I+ N+ +++ +++GLCK
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 51.6 bits (125), Expect = 5e-09
Identities = 20/32 (62%), Positives = 25/32 (78%)
Query: 289 GIAAGVVTYNSLINGLCVDGKLDEAVALRDEM 320
G+ VVTYN+LI+GLC G++DEAV L DEM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 48.9 bits (118), Expect = 3e-08
Identities = 14/28 (50%), Positives = 22/28 (78%)
Query: 470 PNIVTYNVLIKGFCQKGKLEDANGLLNE 497
P++VTYN LI G C+ G++++A LL+E
Sbjct: 5 PDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 3e-08
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 365 ITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDV 399
+TYNTLID CK GR+E+A + M +RG+ PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 48.1 bits (116), Expect = 7e-08
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 323 SGLKPNVVTSNALINGFCKKKLVEKARVLFDD 354
GLKP+VVT N LI+G C+ V++A L D+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 3e-07
Identities = 18/35 (51%), Positives = 27/35 (77%)
Query: 295 VTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNV 329
VTYN+LI+GLC G+++EA+ L EM G++P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.4 bits (109), Expect = 6e-07
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 428 NGMRAGLVTYNILVGALCKDGKSKKAVSLLDEM 460
G++ +VTYN L+ LC+ G+ +AV LLDEM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.0 bits (108), Expect = 9e-07
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 216 GVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMV 251
G+ P VVTYN LIDG C+ G++ +A + +M
Sbjct: 2 GLKPDVVTYNTLIDGLCRA---GRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-06
Identities = 56/276 (20%), Positives = 114/276 (41%), Gaps = 26/276 (9%)
Query: 263 NTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLC------VDGKLDEAVAL 316
N+ + C + A+K+ E M + Y +L LC +G + AL
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFR-LCEWKRAVEEGSRVCSRAL 113
Query: 317 RDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCK 376
+ G++ NA+++ F + + A +F + E+ + ++N L+ Y K
Sbjct: 114 -SSHPSLGVR----LGNAMLSMFVRFGELVHAWYVFGKMPER----DLFSWNVLVGGYAK 164
Query: 377 EGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVT 436
G ++A + + ML GV PDV T+ C++ ++ R + +V G +
Sbjct: 165 AGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDV 224
Query: 437 YNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLN 496
N L+ K G A + D M + + +++N +I G+ + G+ + L
Sbjct: 225 VNALITMYVKCGDVVSARLVFDRMPRRD-------CISWNAMISGYFENGECLEGLELFF 277
Query: 497 ELLEKGLIPNQTTYQ--IVREEMM-EKGFIPDIEGH 529
+ E + P+ T I E++ ++ ++ G+
Sbjct: 278 TMRELSVDPDLMTITSVISACELLGDERLGREMHGY 313
|
Length = 857 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 1e-06
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 365 ITYNTLIDAYCKEGRMEDAFAMRNSMLDRGV 395
+TYN+LI YCK G++E+A + M ++GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 2e-06
Identities = 19/38 (50%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
Query: 222 VTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNE 259
VTYN LIDG CK G++ +A +FK+M E GI P+
Sbjct: 1 VTYNTLIDGLCKA---GRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 4e-06
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 295 VTYNSLINGLCVDGKLDEAVALRDEMMASGL 325
VTYNSLI+G C GKL+EA+ L EM G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 5e-06
Identities = 18/34 (52%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
Query: 222 VTYNILIDGYCKKGGIGKMYKADAVFKDMVENGI 255
VTYN LI GYCK GK+ +A +FK+M E G+
Sbjct: 1 VTYNSLISGYCKA---GKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 7e-06
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 260 VTFNTLIDGFCKDENISAAMKVFEEMGSHGI 290
VT+N+LI G+CK + A+++F+EM G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 8e-06
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 473 VTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPN 506
VTYN LI G C+ G++E+A L E+ E+G+ P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 1e-05
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 473 VTYNVLIKGFCQKGKLEDANGLLNELLEKGL 503
VTYN LI G+C+ GKLE+A L E+ EKG+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 4e-05
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 260 VTFNTLIDGFCKDENISAAMKVFEEMGSHGI 290
VT+NTLIDG CK + A+++F+EM GI
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGI 31
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 6e-05
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 364 VITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLP 397
+ TYN L+ A K G + A A+ M G+ P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 9e-05
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 153 SCNQLLRALVKEGKFEDVEYVYKEMKRRRIELN 185
+ N L+ L K G+ E+ ++KEMK R IE +
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 2e-04
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 333 NALINGFCKKKLVEKARVLFDDISEQGLSPSV 364
N LI+G CK VE+A LF ++ E+G+ P V
Sbjct: 4 NTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 2e-04
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 435 VTYNILVGALCKDGKSKKAVSLLDEMFKM 463
VTYN L+ CK GK ++A+ L EM +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEK 29
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 2e-04
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 294 VVTYNSLINGLCVDGKLDEAVALRDEMMASGLKP 327
+ TYN+L+ L G D A+A+ +EM ASGLKP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 3e-04
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 259 EVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAA 292
T+N L+ K + A+ V EEM + G+
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.3 bits (88), Expect = 5e-04
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 393 RGVLPDVSTYNCLIAGLSREGNVEGVRNIMNE 424
+G+ PDV TYN LI GL R G V+ +++E
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.1 bits (87), Expect = 5e-04
Identities = 12/32 (37%), Positives = 25/32 (78%)
Query: 188 SFNFVLNGLCKAGKLNKASDIMEDMKSLGVSP 219
++N +++GLCKAG++ +A ++ ++MK G+ P
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (87), Expect = 6e-04
Identities = 8/34 (23%), Positives = 29/34 (85%)
Query: 180 RRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMK 213
+ ++ ++ ++N +++GLC+AG++++A +++++M+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 435 VTYNILVGALCKDGKSKKAVSLLDEM 460
VTYN L+ LCK G+ ++A+ L EM
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEM 26
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.002
Identities = 13/30 (43%), Positives = 23/30 (76%)
Query: 188 SFNFVLNGLCKAGKLNKASDIMEDMKSLGV 217
++N +++G CKAGKL +A ++ ++MK GV
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.002
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 221 VVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILP 257
+ TYN L+ K G A AV ++M +G+ P
Sbjct: 1 LETYNALLLALAK---AGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.003
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 330 VTSNALINGFCKKKLVEKARVLFDDISEQGL 360
VT N+LI+G+CK +E+A LF ++ E+G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.2 bits (82), Expect = 0.003
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 186 LDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSP 219
L+++N +L L KAG + A ++E+MK+ G+ P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 34.5 bits (80), Expect = 0.004
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 153 SCNQLLRALVKEGKFEDVEYVYKEMKRRRIE 183
+ N LL AL K G + V +EMK ++
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGLK 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 537 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.92 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.91 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.91 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.91 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.91 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.9 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.88 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.87 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.87 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.86 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.86 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.84 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.82 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.79 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.78 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.75 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.73 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.72 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.71 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.69 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.68 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.68 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.68 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.67 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.66 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.66 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.66 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.65 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.65 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.64 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.63 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.62 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.62 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.59 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.59 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.58 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.58 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.55 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.54 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.53 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.48 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.47 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.47 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.46 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.45 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.43 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.43 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.42 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.4 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.39 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.39 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.39 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.36 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.36 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.33 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.33 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.32 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.32 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.32 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.31 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.27 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.26 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.26 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.24 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.24 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.23 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.23 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.23 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.22 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.22 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.16 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.14 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.13 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.11 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.08 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.05 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.03 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.03 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.02 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.01 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.01 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.0 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.99 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.96 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.96 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.94 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.92 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.9 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.84 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.83 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.81 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.77 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.74 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.73 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.73 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.72 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.71 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.7 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.7 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.69 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.68 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.67 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.66 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.66 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.66 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.64 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.64 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.61 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.6 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.59 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.58 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.57 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.56 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.56 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.53 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.53 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.51 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.49 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.46 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.45 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.45 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.36 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.35 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.25 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.25 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.22 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.21 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.18 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.09 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.06 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.02 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.0 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.98 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.96 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.93 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.92 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.91 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.91 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.9 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.88 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.87 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.87 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.87 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.87 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.85 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.84 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.84 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.82 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.81 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.81 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.8 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.77 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.76 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.76 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.76 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.75 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.74 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.73 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.72 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.68 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.68 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.64 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.63 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.62 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.59 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.58 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.58 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.56 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.56 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.56 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.52 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.49 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.49 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.48 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.44 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.43 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.4 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.39 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.39 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.38 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.37 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.36 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.33 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.28 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.27 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.27 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.27 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.23 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.22 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.18 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.18 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.14 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.07 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.95 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.91 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.89 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.87 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.86 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.8 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.79 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.77 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.74 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.71 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.68 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.64 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.58 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.54 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.48 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.44 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.43 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.29 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.29 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.25 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.25 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.18 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.15 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.12 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.09 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.06 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.91 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.89 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.86 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.84 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.83 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.8 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.77 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.73 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.72 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.71 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.56 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.52 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.5 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.46 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.43 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.37 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.35 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.18 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.04 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.03 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.02 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.02 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.93 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.88 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.85 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.55 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.55 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.45 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.38 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.35 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.28 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.18 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.02 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 93.93 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.87 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.85 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.85 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.64 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.54 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 93.53 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.34 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.27 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.22 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 93.21 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.14 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.08 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.08 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.07 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.04 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 92.99 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.94 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.92 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.73 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 92.7 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.62 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 92.59 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 92.56 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 92.28 | |
| PRK09687 | 280 | putative lyase; Provisional | 91.7 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 91.6 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 91.59 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 91.53 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 91.45 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 91.21 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 91.21 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 91.15 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 90.91 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 90.78 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 90.57 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 89.7 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 89.54 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 89.41 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.41 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 89.25 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 89.24 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 89.23 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 88.36 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 88.32 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 87.9 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 87.47 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 87.01 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 86.98 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 86.96 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 86.64 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 85.87 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 85.85 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 85.82 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 85.68 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 85.48 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 85.24 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 85.15 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 85.11 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 85.1 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 84.83 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 84.49 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 84.31 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 83.92 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 83.39 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 83.13 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 82.53 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 82.5 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 82.15 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 82.15 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 82.13 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 81.07 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 81.04 | |
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 80.73 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 80.51 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 80.35 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 80.05 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-65 Score=526.96 Aligned_cols=463 Identities=19% Similarity=0.252 Sum_probs=412.6
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHH
Q 047648 41 ADPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIID 120 (537)
Q Consensus 41 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (537)
++.+.|++.|+.+.+..-.+++...++.++..|.+.|..++|..+++.|. .|+..+|+
T Consensus 384 G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~----------------------~pd~~Tyn 441 (1060)
T PLN03218 384 GRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR----------------------NPTLSTFN 441 (1060)
T ss_pred cCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC----------------------CCCHHHHH
Confidence 45666777777776553345666666677777777777766666655432 26778999
Q ss_pred HHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 047648 121 MLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAG 200 (537)
Q Consensus 121 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 200 (537)
.++.+|++.|++++|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHhccCCHHHH
Q 047648 201 KLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVE--NGILPNEVTFNTLIDGFCKDENISAA 278 (537)
Q Consensus 201 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~--~~~~p~~~~~~~l~~~~~~~g~~~~a 278 (537)
++++|.++|++|.+.|+.||..+|+.++.+|++ .|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k---~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA 598 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ---SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA 598 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999999999999999999999 8999999999999976 57899999999999999999999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 279 MKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQ 358 (537)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 358 (537)
.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.
T Consensus 599 ~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 599 KEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678 (1060)
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHH
Q 047648 359 GLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYN 438 (537)
Q Consensus 359 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 438 (537)
|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+
T Consensus 679 G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~ 758 (1060)
T PLN03218 679 GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYS 758 (1060)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHH
Q 047648 439 ILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQ----K-------------------GKLEDANGLL 495 (537)
Q Consensus 439 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~ 495 (537)
.++.+|++.|++++|.+++++|.+ .|+.||..+|+.++..|.+ . +..++|..+|
T Consensus 759 sLL~a~~k~G~le~A~~l~~~M~k---~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf 835 (1060)
T PLN03218 759 ILLVASERKDDADVGLDLLSQAKE---DGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVY 835 (1060)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHH
Confidence 999999999999999999999974 7889999999999865432 1 2346799999
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHhcCCcCCccCCCC
Q 047648 496 NELLEKGLIPNQTTYQIVREEMMEKGFIPDIEGHMY 531 (537)
Q Consensus 496 ~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~l~ 531 (537)
++|++.|+.||..||..++..+++.+....+...+.
T Consensus 836 ~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~ 871 (1060)
T PLN03218 836 RETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIE 871 (1060)
T ss_pred HHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHH
Confidence 999999999999999999988877777666654443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-64 Score=517.00 Aligned_cols=455 Identities=18% Similarity=0.285 Sum_probs=431.3
Q ss_pred HhcCCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCch
Q 047648 36 LFNSDADPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRN 115 (537)
Q Consensus 36 l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 115 (537)
.+...+..+.|+.+|+.+.. |+..+|+.++.+|++.|++++|..+++.|.+.|- .++
T Consensus 415 ~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl------------------~pD 471 (1060)
T PLN03218 415 ACKKQRAVKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGL------------------KAD 471 (1060)
T ss_pred HHHHCCCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCC------------------CCC
Confidence 45556678889999887743 8999999999999999999999999999998863 678
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047648 116 SIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNG 195 (537)
Q Consensus 116 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 195 (537)
..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.+|.+
T Consensus 472 ~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a 551 (1060)
T PLN03218 472 CKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISA 551 (1060)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHHHh--CCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 047648 196 LCKAGKLNKASDIMEDMKS--LGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDE 273 (537)
Q Consensus 196 ~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 273 (537)
|++.|++++|.++|++|.. .|+.||..+|+.++.+|++ .|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|
T Consensus 552 ~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k---~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G 628 (1060)
T PLN03218 552 CGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN---AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKG 628 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC
Confidence 9999999999999999986 6789999999999999999 8999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047648 274 NISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFD 353 (537)
Q Consensus 274 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 353 (537)
++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.+|.+|++.|++++|.++|+
T Consensus 629 ~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~ 708 (1060)
T PLN03218 629 DWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYE 708 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 047648 354 DISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAG 433 (537)
Q Consensus 354 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 433 (537)
+|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.||
T Consensus 709 eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd 788 (1060)
T PLN03218 709 DIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPN 788 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHh----c-------------------CChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 047648 434 LVTYNILVGALCK----D-------------------GKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLED 490 (537)
Q Consensus 434 ~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 490 (537)
..+|+.++..|.+ + +..+.|..+|++|.+ .|+.||..+|+.++.++...+..+.
T Consensus 789 ~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~---~Gi~Pd~~T~~~vL~cl~~~~~~~~ 865 (1060)
T PLN03218 789 LVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS---AGTLPTMEVLSQVLGCLQLPHDATL 865 (1060)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHhcccccHHH
Confidence 9999999876432 1 124679999999984 7899999999999988889999999
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 047648 491 ANGLLNELLEKGLIPNQTTYQIVREEMME 519 (537)
Q Consensus 491 A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 519 (537)
+..+++.|...+..|+..+|+.+++++++
T Consensus 866 ~~~m~~~m~~~~~~~~~~~y~~Li~g~~~ 894 (1060)
T PLN03218 866 RNRLIENLGISADSQKQSNLSTLVDGFGE 894 (1060)
T ss_pred HHHHHHHhccCCCCcchhhhHHHHHhhcc
Confidence 99999999988899999999999999854
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-61 Score=503.94 Aligned_cols=477 Identities=18% Similarity=0.231 Sum_probs=350.3
Q ss_pred hHHHHHHHhcCCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHH-------------------HH
Q 047648 29 PNTVILQLFNSDADPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLH-------------------MF 89 (537)
Q Consensus 29 ~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~-------------------~~ 89 (537)
++.++..+.+. +.++.|+.+|..+.+. |..|+..+|+.++++|+..+++..+.++.. .+
T Consensus 155 ~n~li~~~~~~-g~~~~A~~~f~~M~~~-g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y 232 (857)
T PLN03077 155 WNVLVGGYAKA-GYFDEALCLYHRMLWA-GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMY 232 (857)
T ss_pred HHHHHHHHHhC-CCHHHHHHHHHHHHHc-CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHH
Confidence 33444333333 4566666666666543 566666667777766666666555544333 33
Q ss_pred HHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhH
Q 047648 90 VKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFED 169 (537)
Q Consensus 90 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 169 (537)
.+.|+.+.|..+|+.+. .++..+|+++|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+.+.
T Consensus 233 ~k~g~~~~A~~lf~~m~------~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~ 306 (857)
T PLN03077 233 VKCGDVVSARLVFDRMP------RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERL 306 (857)
T ss_pred hcCCCHHHHHHHHhcCC------CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHH
Confidence 34455566666666665 356677778888888888888888888888777777787788888887777777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 047648 170 VEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKD 249 (537)
Q Consensus 170 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~ 249 (537)
+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|++ .|++++|+++|++
T Consensus 307 a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~---~g~~~~A~~lf~~ 379 (857)
T PLN03077 307 GREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEK---NGLPDKALETYAL 379 (857)
T ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHh---CCCHHHHHHHHHH
Confidence 77888777777777777777777777777777777777777775 3577777777777777 7777777777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Q 047648 250 MVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNV 329 (537)
Q Consensus 250 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 329 (537)
|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+ +|.
T Consensus 380 M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~ 455 (857)
T PLN03077 380 MEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDV 455 (857)
T ss_pred HHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCe
Confidence 7777777777777777777777777777777777777777777777777777777777777777777777653 566
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047648 330 VTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGL 409 (537)
Q Consensus 330 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 409 (537)
.+|+.++.+|++.|+.++|..+|++|.. ++.||..+|+.++.+|++.|..+.+.+++..+.+.|+.+|..++++++..|
T Consensus 456 vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y 534 (857)
T PLN03077 456 ISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLY 534 (857)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHH
Confidence 6777777777777777777777777764 466777777777777777777777777777777777776776777777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHH
Q 047648 410 SREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLE 489 (537)
Q Consensus 410 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 489 (537)
++.|++++|.++|+.+ .+|..+|+.+|.+|++.|+.++|.++|++|.+ .|+.||..||+.++.+|.+.|+++
T Consensus 535 ~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~---~g~~Pd~~T~~~ll~a~~~~g~v~ 606 (857)
T PLN03077 535 VRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVE---SGVNPDEVTFISLLCACSRSGMVT 606 (857)
T ss_pred HHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCCcccHHHHHHHHhhcChHH
Confidence 7777777777777665 46777888888888888888888888888764 567788888888888888888888
Q ss_pred HHHHHHHHHH-HcCCCCCHHhHHHHHHHHHhcCCcCCccCCCCcc
Q 047648 490 DANGLLNELL-EKGLIPNQTTYQIVREEMMEKGFIPDIEGHMYNI 533 (537)
Q Consensus 490 ~A~~~~~~~~-~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~l~~~ 533 (537)
+|.++|++|. +.|+.|+..+|..++..|++.|++++|+.++.++
T Consensus 607 ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 607 QGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 8888888887 5688888888888888888888888887766554
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-61 Score=492.29 Aligned_cols=461 Identities=18% Similarity=0.262 Sum_probs=433.3
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccC
Q 047648 31 TVILQLFNSDADPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSD 110 (537)
Q Consensus 31 ~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~ 110 (537)
..+..+ ...+.++.|+.+|.++....++.++..+|+.++.+|++.++++.+.+++..+.+.|-
T Consensus 92 ~~i~~l-~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~---------------- 154 (697)
T PLN03081 92 SQIEKL-VACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGF---------------- 154 (697)
T ss_pred HHHHHH-HcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC----------------
Confidence 344444 345678999999999987766889999999999999999999999999999988863
Q ss_pred CCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHH
Q 047648 111 SLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFN 190 (537)
Q Consensus 111 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 190 (537)
.++..+|+.++..|++.|++++|.++|++|. .||..+||.++.+|++.|++++|.++|++|.+.|+.|+..+|+
T Consensus 155 --~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~ 228 (697)
T PLN03081 155 --EPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFV 228 (697)
T ss_pred --CcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHH
Confidence 5778999999999999999999999999996 4799999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 047648 191 FVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFC 270 (537)
Q Consensus 191 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 270 (537)
.++.+|++.|+.+.+.+++..+.+.|+.||..+|+.++.+|++ .|++++|.++|++|.. +|..+|+.++.+|+
T Consensus 229 ~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k---~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~ 301 (697)
T PLN03081 229 VMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSK---CGDIEDARCVFDGMPE----KTTVAWNSMLAGYA 301 (697)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHH---CCCHHHHHHHHHhCCC----CChhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999 8999999999999964 59999999999999
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047648 271 KDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARV 350 (537)
Q Consensus 271 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 350 (537)
+.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|++.|++++|.+
T Consensus 302 ~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~ 381 (697)
T PLN03081 302 LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARN 381 (697)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CC
Q 047648 351 LFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVN-NG 429 (537)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~ 429 (537)
+|++|.+ ||..+|+.|+.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|
T Consensus 382 vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g 457 (697)
T PLN03081 382 VFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR 457 (697)
T ss_pred HHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC
Confidence 9999864 689999999999999999999999999999999999999999999999999999999999999986 59
Q ss_pred CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HH
Q 047648 430 MRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPN-QT 508 (537)
Q Consensus 430 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~ 508 (537)
+.|+..+|+.++++|++.|++++|.++++++ +..|+..+|+.++.+|...|+++.|..+++++.+ +.|+ ..
T Consensus 458 ~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~------~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~ 529 (697)
T PLN03081 458 IKPRAMHYACMIELLGREGLLDEAYAMIRRA------PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLN 529 (697)
T ss_pred CCCCccchHhHHHHHHhcCCHHHHHHHHHHC------CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCc
Confidence 9999999999999999999999999999876 4589999999999999999999999999999976 5675 57
Q ss_pred hHHHHHHHHHhcCCcCCccCCCCcc
Q 047648 509 TYQIVREEMMEKGFIPDIEGHMYNI 533 (537)
Q Consensus 509 ~~~~l~~~~~~~g~~~~a~~~l~~~ 533 (537)
+|..+++.|++.|+.++|..+...+
T Consensus 530 ~y~~L~~~y~~~G~~~~A~~v~~~m 554 (697)
T PLN03081 530 NYVVLLNLYNSSGRQAEAAKVVETL 554 (697)
T ss_pred chHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999999999998776544
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-60 Score=500.45 Aligned_cols=478 Identities=18% Similarity=0.244 Sum_probs=355.3
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHH-------------------HH
Q 047648 30 NTVILQLFNSDADPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHM-------------------FV 90 (537)
Q Consensus 30 ~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~-------------------~~ 90 (537)
+..+..++.. +.++.|+.+|..+.+. +.+++..+|..++..|...+.++.+..++.. +.
T Consensus 55 n~~i~~l~~~-g~~~~A~~l~~~m~~~-g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~ 132 (857)
T PLN03077 55 NSQLRALCSH-GQLEQALKLLESMQEL-RVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFV 132 (857)
T ss_pred HHHHHHHHhC-CCHHHHHHHHHHHHhc-CCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHH
Confidence 3444445444 5788999999988764 6788888999999999888888877766554 34
Q ss_pred HCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHH-------------
Q 047648 91 KNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQL------------- 157 (537)
Q Consensus 91 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l------------- 157 (537)
+.|+...+..+|+.+. .++..+|+.+|.+|.+.|++++|+++|++|...|+.||..+|+.+
T Consensus 133 ~~g~~~~A~~~f~~m~------~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~ 206 (857)
T PLN03077 133 RFGELVHAWYVFGKMP------ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARG 206 (857)
T ss_pred hCCChHHHHHHHhcCC------CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhH
Confidence 5566667777777776 467789999999999999999999999999888887776666544
Q ss_pred ----------------------HHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047648 158 ----------------------LRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSL 215 (537)
Q Consensus 158 ----------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 215 (537)
+.+|++.|++++|..+|++|.. ||..+||.+|.+|++.|++++|.++|++|.+.
T Consensus 207 ~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~ 282 (857)
T PLN03077 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMREL 282 (857)
T ss_pred HHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 4455555666666666666542 35666666666666667777777777777777
Q ss_pred CCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChh
Q 047648 216 GVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVV 295 (537)
Q Consensus 216 ~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 295 (537)
|+.||..+|+.++.+|++ .|+.+.+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. ||..
T Consensus 283 g~~Pd~~ty~~ll~a~~~---~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~ 355 (857)
T PLN03077 283 SVDPDLMTITSVISACEL---LGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAV 355 (857)
T ss_pred CCCCChhHHHHHHHHHHh---cCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCee
Confidence 777777777777777777 677777777777777777777777777777777777777777777777753 5777
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 047648 296 TYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYC 375 (537)
Q Consensus 296 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 375 (537)
+|+.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..+|+.|+.+|+
T Consensus 356 s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~ 435 (857)
T PLN03077 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYS 435 (857)
T ss_pred eHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 78888888888888888888888888778888888888888888777777777777777777777777777777777777
Q ss_pred hcCChHHHHHHHHHHHhC------------------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047648 376 KEGRMEDAFAMRNSMLDR------------------------------GVLPDVSTYNCLIAGLSREGNVEGVRNIMNEL 425 (537)
Q Consensus 376 ~~g~~~~A~~~~~~~~~~------------------------------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 425 (537)
+.|++++|.++|++|.+. ++.||..||+.++.+|++.|+++.+.+++..+
T Consensus 436 k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~ 515 (857)
T PLN03077 436 KCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHV 515 (857)
T ss_pred HcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHH
Confidence 777777777777666432 23444444444444444444444444444444
Q ss_pred HHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 047648 426 VNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIP 505 (537)
Q Consensus 426 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 505 (537)
.+.|+.++..++++|+++|+++|++++|.++|+++ .||..+|+.++.+|++.|+.++|.++|++|.+.|+.|
T Consensus 516 ~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P 587 (857)
T PLN03077 516 LRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP 587 (857)
T ss_pred HHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 44455555555566667777777777777777665 5899999999999999999999999999999999999
Q ss_pred CHHhHHHHHHHHHhcCCcCCccCCCCccC
Q 047648 506 NQTTYQIVREEMMEKGFIPDIEGHMYNIS 534 (537)
Q Consensus 506 ~~~~~~~l~~~~~~~g~~~~a~~~l~~~~ 534 (537)
|..||..++.+|++.|+++++..++..+.
T Consensus 588 d~~T~~~ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 588 DEVTFISLLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred CcccHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 99999999999999999999877765543
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-58 Score=476.05 Aligned_cols=434 Identities=20% Similarity=0.293 Sum_probs=411.7
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHH
Q 047648 62 SLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKR 141 (537)
Q Consensus 62 ~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 141 (537)
+...++.+|..+.+.|++++|..+++.|.+.+. ..++..+|+.++.++.+.++++.|.+++..
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~-----------------~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~ 148 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCP-----------------FTLPASTYDALVEACIALKSIRCVKAVYWH 148 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-----------------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 445789999999999999999999998876642 146789999999999999999999999999
Q ss_pred HhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh
Q 047648 142 AGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKV 221 (537)
Q Consensus 142 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 221 (537)
|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.|+.
T Consensus 149 m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~ 224 (697)
T PLN03081 149 VESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEP 224 (697)
T ss_pred HHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCCh
Confidence 99999999999999999999999999999999999974 69999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 047648 222 VTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLI 301 (537)
Q Consensus 222 ~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 301 (537)
.+|+.++.+++. .|..+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|+.|.. +|..+|+.++
T Consensus 225 ~t~~~ll~a~~~---~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li 297 (697)
T PLN03081 225 RTFVVMLRASAG---LGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSML 297 (697)
T ss_pred hhHHHHHHHHhc---CCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHH
Confidence 999999999999 899999999999999999999999999999999999999999999999964 5899999999
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChH
Q 047648 302 NGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRME 381 (537)
Q Consensus 302 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 381 (537)
.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+.+|++.|+++
T Consensus 298 ~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~ 377 (697)
T PLN03081 298 AGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRME 377 (697)
T ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047648 382 DAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMF 461 (537)
Q Consensus 382 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 461 (537)
+|.++|++|.+ ||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|..++|.++|+.|.
T Consensus 378 ~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~ 453 (697)
T PLN03081 378 DARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS 453 (697)
T ss_pred HHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 99999999964 68999999999999999999999999999999999999999999999999999999999999997
Q ss_pred HchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCcCCccCCCCc
Q 047648 462 KMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMMEKGFIPDIEGHMYN 532 (537)
Q Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~l~~ 532 (537)
+ ..++.|+..+|+.++.+|.+.|++++|.+++++| ++.|+..+|+.++.+|...|+++.++....+
T Consensus 454 ~--~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~ 519 (697)
T PLN03081 454 E--NHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEK 519 (697)
T ss_pred H--hcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 5 4688999999999999999999999999998876 5889999999999999999999987665443
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-30 Score=275.66 Aligned_cols=472 Identities=12% Similarity=0.062 Sum_probs=379.1
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHC------------------CCCCChHH
Q 047648 39 SDADPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKN------------------GKFTSVST 100 (537)
Q Consensus 39 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~------------------g~~~~~~~ 100 (537)
..++++.|...+..+.+. .+........++..+.+.|++++|..++..+.+. |+.+.+..
T Consensus 409 ~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 486 (899)
T TIGR02917 409 SQGDPSEAIADLETAAQL--DPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKARE 486 (899)
T ss_pred hCCChHHHHHHHHHHHhh--CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHH
Confidence 344555555555555443 2222333444455555555555555544443321 23333333
Q ss_pred HHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 047648 101 IFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRR 180 (537)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 180 (537)
.|+...... +.+...+..++..+...|++++|.+.|+++...+ +.+..++..+...+.+.|++++|...++++.+.
T Consensus 487 ~~~~a~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 562 (899)
T TIGR02917 487 AFEKALSIE---PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAEL 562 (899)
T ss_pred HHHHHHhhC---CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 333333221 4556677788899999999999999999998765 457788899999999999999999999998877
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHH
Q 047648 181 RIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEV 260 (537)
Q Consensus 181 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~ 260 (537)
+. .+...+..++..+...|++++|.++++.+.+.. +.+...|..+..++.. .|++++|...++++.+.. +.+..
T Consensus 563 ~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~-~~~~~ 636 (899)
T TIGR02917 563 NP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLA---AGDLNKAVSSFKKLLALQ-PDSAL 636 (899)
T ss_pred Cc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhC-CCChH
Confidence 53 367788889999999999999999999998754 4467889999999998 899999999999998764 33677
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047648 261 TFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFC 340 (537)
Q Consensus 261 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 340 (537)
.+..+...+.+.|++++|..+|+++.+.. +.+..++..+...+...|++++|.++++.+.+.. +.+...+..+...+.
T Consensus 637 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 714 (899)
T TIGR02917 637 ALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYL 714 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHH
Confidence 88889999999999999999999998763 3467889999999999999999999999998875 567778888999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047648 341 KKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRN 420 (537)
Q Consensus 341 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 420 (537)
..|++++|...|..+...++ +..++..++.++.+.|++++|.+.++.+.+..+. +...+..+...|...|++++|..
T Consensus 715 ~~g~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~ 791 (899)
T TIGR02917 715 RQKDYPAAIQAYRKALKRAP--SSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIK 791 (899)
T ss_pred HCCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHH
Confidence 99999999999999988754 4467778899999999999999999999987654 78899999999999999999999
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 421 IMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
.|+++.+.. +.+..+++.+...+...|+ .+|+..++++++.. +.+..++..+..++...|++++|.++++++++
T Consensus 792 ~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 865 (899)
T TIGR02917 792 HYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA----PNIPAILDTLGWLLVEKGEADRALPLLRKAVN 865 (899)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC----CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999875 6778899999999999999 88999999998643 34667888999999999999999999999999
Q ss_pred cCCCCCHHhHHHHHHHHHhcCCcCCccCCCCccC
Q 047648 501 KGLIPNQTTYQIVREEMMEKGFIPDIEGHMYNIS 534 (537)
Q Consensus 501 ~g~~p~~~~~~~l~~~~~~~g~~~~a~~~l~~~~ 534 (537)
.+.. +..++..+...+.+.|+.++|...+.++.
T Consensus 866 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 866 IAPE-AAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred hCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7643 88999999999999999999988876654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-29 Score=266.68 Aligned_cols=401 Identities=15% Similarity=0.114 Sum_probs=260.7
Q ss_pred chHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047648 114 RNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVL 193 (537)
Q Consensus 114 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 193 (537)
.++.++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+.+.+... .+..++..+.
T Consensus 463 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 540 (899)
T TIGR02917 463 DNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILALA 540 (899)
T ss_pred CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHH
Confidence 344556666666666666666666666665543 33444555566666666666666666666665432 2555666666
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 047648 194 NGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDE 273 (537)
Q Consensus 194 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 273 (537)
..+.+.|+.++|..+++++.+.+ +.+...+..+...+.. .|++++|..+++.+.... +.+...|..+...+.+.|
T Consensus 541 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 615 (899)
T TIGR02917 541 GLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLG---KGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAG 615 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHH---CCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 66666666666666666665543 2244555566666666 666777777776666542 335566667777777777
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047648 274 NISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFD 353 (537)
Q Consensus 274 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 353 (537)
++++|...|+.+.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..++..+...|++++|..+++
T Consensus 616 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 693 (899)
T TIGR02917 616 DLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAK 693 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777777766543 2345566666667777777777777777766643 3445666677777777777777777777
Q ss_pred HHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 047648 354 DISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAG 433 (537)
Q Consensus 354 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 433 (537)
.+.+.++ .+...+..+...+...|++++|...++.+...++ +..++..+..++...|++++|.+.++++.+.. +.+
T Consensus 694 ~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~ 769 (899)
T TIGR02917 694 SLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP--SSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PND 769 (899)
T ss_pred HHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 7766543 2555666677777777777777777777776543 33556666777777777777777777777654 556
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHhHHH
Q 047648 434 LVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIP-NQTTYQI 512 (537)
Q Consensus 434 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~ 512 (537)
...+..+...|...|++++|.+.|+++++.. ++++.++..++..+...|+ .+|+..++++.+. .| +..++..
T Consensus 770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~--~~~~~~~~~~ 842 (899)
T TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYRTVVKKA----PDNAVVLNNLAWLYLELKD-PRALEYAEKALKL--APNIPAILDT 842 (899)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh--CCCCcHHHHH
Confidence 6777777777777777777777777776532 4566777777777777777 6677777777763 33 3455666
Q ss_pred HHHHHHhcCCcCCccCCCCccC
Q 047648 513 VREEMMEKGFIPDIEGHMYNIS 534 (537)
Q Consensus 513 l~~~~~~~g~~~~a~~~l~~~~ 534 (537)
+...+...|++++|..++..++
T Consensus 843 ~~~~~~~~g~~~~A~~~~~~a~ 864 (899)
T TIGR02917 843 LGWLLVEKGEADRALPLLRKAV 864 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 6777777788777776665443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-21 Score=209.95 Aligned_cols=472 Identities=11% Similarity=0.033 Sum_probs=305.0
Q ss_pred cCCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCC------------------CChH
Q 047648 38 NSDADPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKF------------------TSVS 99 (537)
Q Consensus 38 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~------------------~~~~ 99 (537)
...++++.|+..++.+++. .|.+...+..+..++...|++++|...++.+.+.... ..+.
T Consensus 158 ~~~g~~~~A~~~L~~ll~~--~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~ 235 (1157)
T PRK11447 158 KLPAQRPEAINQLQRLNAD--YPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASV 235 (1157)
T ss_pred hCCccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhH
Confidence 3456788899999999887 5677888899999999999999999999887654221 1111
Q ss_pred HHHHHhhhccCCCC----------------chH-HHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 047648 100 TIFHALSTCSDSLC----------------RNS-IIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALV 162 (537)
Q Consensus 100 ~~~~~~~~~~~~~~----------------~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 162 (537)
..+.......+... .++ .........+...|++++|+..|++..+.. +.+..++..+..++.
T Consensus 236 ~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~ 314 (1157)
T PRK11447 236 AALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYS 314 (1157)
T ss_pred HHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 11211111111000 000 111233567788999999999999999864 447788899999999
Q ss_pred hCCChhHHHHHHHHHHhCCCCCC-HHHH------------HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 047648 163 KEGKFEDVEYVYKEMKRRRIELN-LDSF------------NFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILID 229 (537)
Q Consensus 163 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 229 (537)
+.|++++|...|++..+...... ...+ ......+.+.|++++|...|+++.+... .+...+..+..
T Consensus 315 ~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~ 393 (1157)
T PRK11447 315 QQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGD 393 (1157)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 99999999999999887643221 1111 1234567789999999999999998742 35566777888
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC--------CChhhHHHHH
Q 047648 230 GYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIA--------AGVVTYNSLI 301 (537)
Q Consensus 230 ~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~ 301 (537)
.+.. .|++++|++.|++..+... .+...+..+...+. .++.++|..+++.+...... .....+..+.
T Consensus 394 ~~~~---~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a 468 (1157)
T PRK11447 394 VAMA---RKDYAAAERYYQQALRMDP-GNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQA 468 (1157)
T ss_pred HHHH---CCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHH
Confidence 8888 8999999999999887532 23444444444442 23445554444433211000 0011223333
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHH-------------
Q 047648 302 NGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYN------------- 368 (537)
Q Consensus 302 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------- 368 (537)
..+...|++++|++.+++..+.. +-+...+..+...|.+.|++++|...++++.+..+. +...+.
T Consensus 469 ~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~ 546 (1157)
T PRK11447 469 EALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDR 546 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHH
Confidence 44444555555555555544432 123334444444455555555555555544443221 222221
Q ss_pred -------------------------------HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 047648 369 -------------------------------TLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEG 417 (537)
Q Consensus 369 -------------------------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 417 (537)
.+...+...|++++|..+++. .+++...+..+...+.+.|++++
T Consensus 547 ~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~ 621 (1157)
T PRK11447 547 AALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAA 621 (1157)
T ss_pred HHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHH
Confidence 234445566666666666551 23355667788888999999999
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047648 418 VRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNE 497 (537)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 497 (537)
|+..|++..+.. +.+...+..++..|...|++++|++.++.+.+.. +.+...+..+..++...|++++|.+++++
T Consensus 622 A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~----p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 696 (1157)
T PRK11447 622 ARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA----NDSLNTQRRVALAWAALGDTAAAQRTFNR 696 (1157)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC----CCChHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999875 5567888999999999999999999999886422 33566777788889999999999999999
Q ss_pred HHHcCCC--C---CHHhHHHHHHHHHhcCCcCCccCCC
Q 047648 498 LLEKGLI--P---NQTTYQIVREEMMEKGFIPDIEGHM 530 (537)
Q Consensus 498 ~~~~g~~--p---~~~~~~~l~~~~~~~g~~~~a~~~l 530 (537)
++..... | +...+..+...+...|+.++|...+
T Consensus 697 al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y 734 (1157)
T PRK11447 697 LIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETY 734 (1157)
T ss_pred HhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8874321 1 2245566677788888887776553
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-21 Score=209.62 Aligned_cols=478 Identities=11% Similarity=-0.001 Sum_probs=255.6
Q ss_pred HHhcCCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCc
Q 047648 35 QLFNSDADPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCR 114 (537)
Q Consensus 35 ~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 114 (537)
.+....+++++|...+..+... .|.++.++..++..+.+.|+.++|...++.+.+..........+....... .+
T Consensus 36 ~~~~~~~~~d~a~~~l~kl~~~--~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~---~~ 110 (1157)
T PRK11447 36 RLGEATHREDLVRQSLYRLELI--DPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLS---TP 110 (1157)
T ss_pred HHHHhhCChHHHHHHHHHHHcc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhc---CC
Confidence 3455678899999999998876 567788899999999999999999998888877643222111111111100 12
Q ss_pred hHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChh-hHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047648 115 NSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVL-SCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVL 193 (537)
Q Consensus 115 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 193 (537)
+....-.+.+.+...|++++|++.|+.+.+.+ +|+.. ............|+.++|.+.++++.+..+. +...+..+.
T Consensus 111 ~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA 188 (1157)
T PRK11447 111 EGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLA 188 (1157)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 22223344455666666666666666666543 22221 1111111122346666666666666655322 445555566
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCC------------------C--------------CChhhHH----------------
Q 047648 194 NGLCKAGKLNKASDIMEDMKSLGV------------------S--------------PKVVTYN---------------- 225 (537)
Q Consensus 194 ~~~~~~g~~~~a~~~~~~~~~~~~------------------~--------------~~~~~~~---------------- 225 (537)
..+...|+.++|++.++++.+... . |+.....
T Consensus 189 ~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp 268 (1157)
T PRK11447 189 LLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADP 268 (1157)
T ss_pred HHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCc
Confidence 666666666666666665533210 0 0000000
Q ss_pred -----HHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-ChhhHH-
Q 047648 226 -----ILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAA-GVVTYN- 298 (537)
Q Consensus 226 -----~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~- 298 (537)
.....+.. .|++++|+..|++..+... .+..++..+...+.+.|++++|+..|++..+..... ....|.
T Consensus 269 ~~~~~~~G~~~~~---~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ 344 (1157)
T PRK11447 269 AFRARAQGLAAVD---SGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWES 344 (1157)
T ss_pred chHHHHHHHHHHH---CCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHH
Confidence 00112223 4666666666666655422 245556666666666666666666666665532111 111111
Q ss_pred -----------HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHH
Q 047648 299 -----------SLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITY 367 (537)
Q Consensus 299 -----------~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 367 (537)
.....+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|.+.|+++.+..+. +...+
T Consensus 345 ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~ 422 (1157)
T PRK11447 345 LLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAV 422 (1157)
T ss_pred HHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence 11234445666666666666665542 233444555556666666666666666665544222 11111
Q ss_pred H------------------------------------------HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047648 368 N------------------------------------------TLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCL 405 (537)
Q Consensus 368 ~------------------------------------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 405 (537)
. .+...+...|++++|++.+++.++..+. +...+..+
T Consensus 423 ~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~L 501 (1157)
T PRK11447 423 RGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRL 501 (1157)
T ss_pred HHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 1 1222333456666666666666655433 45555566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC-------------------------------------------------------
Q 047648 406 IAGLSREGNVEGVRNIMNELVNNGM------------------------------------------------------- 430 (537)
Q Consensus 406 ~~~~~~~~~~~~a~~~~~~~~~~~~------------------------------------------------------- 430 (537)
...|...|++++|...++++.+...
T Consensus 502 A~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~ 581 (1157)
T PRK11447 502 AQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETAN 581 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHH
Confidence 6666666666666666666554321
Q ss_pred ------------------CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047648 431 ------------------RAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDAN 492 (537)
Q Consensus 431 ------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 492 (537)
+.+...+..+...+.+.|++++|++.|+++++.. +.+...+..++..|...|++++|+
T Consensus 582 ~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~----P~~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 582 RLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE----PGNADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 1222233444555556666666666666666432 335566666666666666666666
Q ss_pred HHHHHHHHcCCCCC-HHhHHHHHHHHHhcCCcCCccCCCCc
Q 047648 493 GLLNELLEKGLIPN-QTTYQIVREEMMEKGFIPDIEGHMYN 532 (537)
Q Consensus 493 ~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~l~~ 532 (537)
+.++.+.+ ..|+ ..+...+..++.+.|++++|..++..
T Consensus 658 ~~l~~ll~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 696 (1157)
T PRK11447 658 AQLAKLPA--TANDSLNTQRRVALAWAALGDTAAAQRTFNR 696 (1157)
T ss_pred HHHHHHhc--cCCCChHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 66666655 2333 33444555566666666666554443
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-22 Score=185.09 Aligned_cols=421 Identities=15% Similarity=0.088 Sum_probs=340.7
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCh-----HHHHHHhhhc----------cCCCCchHHHHHHHHHHHHHcC
Q 047648 66 TGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSV-----STIFHALSTC----------SDSLCRNSIIIDMLMLAYVKNM 130 (537)
Q Consensus 66 ~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~-----~~~~~~~~~~----------~~~~~~~~~~~~~l~~~~~~~g 130 (537)
...+.+-+.+.|++.+|++...+.-...+.... ..++-...+. -...+.-..+|..+.+.+-..|
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg 130 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG 130 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence 566788888889999998877665443211111 0111100000 0111334588999999999999
Q ss_pred CchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHH
Q 047648 131 KPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLD-SFNFVLNGLCKAGKLNKASDIM 209 (537)
Q Consensus 131 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~ 209 (537)
++++|+.+|+.+++.. +..+..|..+..++...|+.+.|.+.|.+.++. .|+.. ....+....-..|++++|...+
T Consensus 131 ~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cY 207 (966)
T KOG4626|consen 131 QLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACY 207 (966)
T ss_pred hHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHH
Confidence 9999999999999874 336789999999999999999999999999886 34433 3345566667789999999999
Q ss_pred HHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 047648 210 EDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPN-EVTFNTLIDGFCKDENISAAMKVFEEMGSH 288 (537)
Q Consensus 210 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 288 (537)
.+.++... --...|+.|...+-. .|+...|+..|++.... .|+ ...|..|...|...+.++.|+..|.+....
T Consensus 208 lkAi~~qp-~fAiawsnLg~~f~~---~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 208 LKAIETQP-CFAIAWSNLGCVFNA---QGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHHHhhCC-ceeeeehhcchHHhh---cchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 98887532 235678888888888 89999999999998875 344 568999999999999999999999998876
Q ss_pred CCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHH
Q 047648 289 GIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYN 368 (537)
Q Consensus 289 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 368 (537)
. +.....+..+.-.|..+|..+.|+..+++.++.. +--+..|+.+..++-..|++.+|...+.+.....+. .....+
T Consensus 282 r-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~ 358 (966)
T KOG4626|consen 282 R-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMN 358 (966)
T ss_pred C-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHH
Confidence 3 3357788888889999999999999999999863 223678999999999999999999999999887443 567888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhc
Q 047648 369 TLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAG-LVTYNILVGALCKD 447 (537)
Q Consensus 369 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 447 (537)
.|...|...|.+++|..+|....+-.+. -...++.|...|-+.|++++|+..|++.++. .|+ ...|+.+...|-..
T Consensus 359 NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 359 NLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHh
Confidence 9999999999999999999999986433 3567889999999999999999999999985 565 57899999999999
Q ss_pred CChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 047648 448 GKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQ 507 (537)
Q Consensus 448 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 507 (537)
|+.+.|++.+.+++... +.=...++.|...|-..|+..+|+.-+++.++ ++||.
T Consensus 436 g~v~~A~q~y~rAI~~n----Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQIN----PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDF 489 (966)
T ss_pred hhHHHHHHHHHHHHhcC----cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCC
Confidence 99999999999998643 22357889999999999999999999999998 77875
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.6e-22 Score=182.33 Aligned_cols=441 Identities=14% Similarity=0.128 Sum_probs=352.6
Q ss_pred HHHHHHHHHhcCCc-hHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 047648 66 TGRLLHSLVVAKKY-PKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGD 144 (537)
Q Consensus 66 ~~~l~~~~~~~~~~-~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 144 (537)
-+.++.-+-+...- +.-.++....-+.|++.++.+.-.-.-..+ +.+....-.+-..+.+..+.+.....-....+
T Consensus 34 s~~v~qq~~~t~~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d---~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r 110 (966)
T KOG4626|consen 34 SSSVLQQFNKTHEGSDDRLELAHRLYQGGDYKQAEKHCNMVGQED---PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIR 110 (966)
T ss_pred chHHHHHhccCCccchhHHHHHHHHHhccCHHHHHHHHhHhhccC---CCcccceeeehhhhhcccchhhhhhhhhhhhh
Confidence 34455555544432 234555566666788888877655444332 33333333455667777777777666555555
Q ss_pred CCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhH
Q 047648 145 YGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTY 224 (537)
Q Consensus 145 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 224 (537)
.. +.-..+|..+...+-..|++++|+..|+.+.+...+ ....|..+..++...|+.+.|.+.|.+.++. .|+....
T Consensus 111 ~~-~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca 186 (966)
T KOG4626|consen 111 KN-PQGAEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCA 186 (966)
T ss_pred cc-chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--Ccchhhh
Confidence 43 446788999999999999999999999999998644 7889999999999999999999999999886 5666655
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHH
Q 047648 225 NILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAG-VVTYNSLING 303 (537)
Q Consensus 225 ~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~ 303 (537)
.+-+..+.+. .|+.++|...+.+..+... --...|..|...+-..|+...|+..|++..+.. |+ ...|-.|...
T Consensus 187 ~s~lgnLlka--~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV 261 (966)
T KOG4626|consen 187 RSDLGNLLKA--EGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNV 261 (966)
T ss_pred hcchhHHHHh--hcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHH
Confidence 5544444443 7999999998888877522 235778999999999999999999999998853 33 6789999999
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHH
Q 047648 304 LCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDA 383 (537)
Q Consensus 304 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 383 (537)
|...+.+++|+..+.+..... +.....+..+...|...|.++-|+..+++..+..+. -+..|+.|..++-..|+..+|
T Consensus 262 ~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea 339 (966)
T KOG4626|consen 262 YKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEA 339 (966)
T ss_pred HHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHH
Confidence 999999999999999988753 334577888888899999999999999999887433 467899999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047648 384 FAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKM 463 (537)
Q Consensus 384 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 463 (537)
.+.+.+.+...+. .....+.|...|...|.++.|..+|....+.. +--....+.|...|-++|++++|+..|++++++
T Consensus 340 ~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI 417 (966)
T KOG4626|consen 340 VDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI 417 (966)
T ss_pred HHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc
Confidence 9999999987544 67788999999999999999999999999863 233567899999999999999999999999864
Q ss_pred hhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhcCCcCCccC
Q 047648 464 EKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQ-TTYQIVREEMMEKGFIPDIEG 528 (537)
Q Consensus 464 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~ 528 (537)
. +.-...|+.+...|-..|+.+.|++.+.+.+. +.|.. ...+.+...+..+|++++|+.
T Consensus 418 ~----P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~ 477 (966)
T KOG4626|consen 418 K----PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQ 477 (966)
T ss_pred C----chHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHH
Confidence 3 22367899999999999999999999999998 77875 678889999999999998854
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-19 Score=183.04 Aligned_cols=401 Identities=11% Similarity=-0.037 Sum_probs=284.5
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhhC
Q 047648 66 TGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDY 145 (537)
Q Consensus 66 ~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 145 (537)
+......+.+.|++++|...++..++. .|++..|..+..+|...|++++|++.++.+++.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--------------------~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l 189 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--------------------KPDPVYYSNRAACHNALGDWEKVVEDTTAALEL 189 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--------------------CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 345566666777777777777666554 234567888888999999999999999998886
Q ss_pred CCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhh--
Q 047648 146 GLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVT-- 223 (537)
Q Consensus 146 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-- 223 (537)
+ +.+..+|..+..++...|++++|..-|......+...+.. ...++..+... .+........+.. +++...
T Consensus 190 ~-p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~----~a~~~~~~~l~~~-~~~~~~~~ 262 (615)
T TIGR00990 190 D-PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKK----FAESKAKEILETK-PENLPSVT 262 (615)
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHH----HHHHHHHHHHhcC-CCCCCCHH
Confidence 4 3466788888899999999999988887665442211211 11111111111 1111111111110 000000
Q ss_pred -------------------------------HHHHHHHHhcCCCCCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHh
Q 047648 224 -------------------------------YNILIDGYCKKGGIGKMYKADAVFKDMVENG-ILP-NEVTFNTLIDGFC 270 (537)
Q Consensus 224 -------------------------------~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~-~~p-~~~~~~~l~~~~~ 270 (537)
+..+...+......+.+++|.+.|+.....+ ..| ....+..+...+.
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~ 342 (615)
T TIGR00990 263 FVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKC 342 (615)
T ss_pred HHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH
Confidence 0111111011011467889999999988764 223 4567788888888
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047648 271 KDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARV 350 (537)
Q Consensus 271 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 350 (537)
..|++++|+..|++..... +.....|..+..++...|++++|+..|+++.+.. +.+..++..+...+...|++++|..
T Consensus 343 ~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~ 420 (615)
T TIGR00990 343 LKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGK 420 (615)
T ss_pred HcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999988763 2246678888889999999999999999998864 4567888899999999999999999
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 047648 351 LFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGM 430 (537)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 430 (537)
.|++..+..+. +...+..+..++.+.|++++|+..+++.++..+. ++..+..+...+...|++++|+..|++..+...
T Consensus 421 ~~~kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p 498 (615)
T TIGR00990 421 DYQKSIDLDPD-FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEK 498 (615)
T ss_pred HHHHHHHcCcc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 99999887544 6677888889999999999999999999886543 678899999999999999999999999988642
Q ss_pred CCChH------HHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 431 RAGLV------TYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEK 501 (537)
Q Consensus 431 ~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (537)
..+.. .++.....+...|++++|.++++++++.. +.+...+..++..+.+.|++++|++.|++..+.
T Consensus 499 ~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~----p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 499 ETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID----PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred ccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC----CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 21111 12222233445699999999999988643 335567889999999999999999999999874
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6e-20 Score=186.02 Aligned_cols=333 Identities=12% Similarity=0.095 Sum_probs=239.4
Q ss_pred HHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 047648 121 MLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAG 200 (537)
Q Consensus 121 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 200 (537)
.++..+.+.|++++|+.+++...... +-+...+..++.+....|++++|...|+++.+..+. +...+..+...+...|
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g 124 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcC
Confidence 46677778888888888888887764 334555666667777788888888888888876433 5667777788888888
Q ss_pred ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 047648 201 KLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMK 280 (537)
Q Consensus 201 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 280 (537)
++++|...+++..+.. +.+...+..+...+.. .|+.++|...++.+...... +...+..+ ..+...|++++|..
T Consensus 125 ~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~---~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 125 QYATVADLAEQAWLAF-SGNSQIFALHLRTLVL---MDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred CHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH---CCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHH
Confidence 8888888888887753 2245567777777777 78888888888877655322 23333333 34677788888888
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHH
Q 047648 281 VFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEK----ARVLFDDIS 356 (537)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~ 356 (537)
.++.+.+....++...+..+..++...|++++|+..++++.... +.+...+..+...+...|++++ |...|++..
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 88887665433344444555677778888888888888887754 4456677778888888888775 788888887
Q ss_pred HcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-H
Q 047648 357 EQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGL-V 435 (537)
Q Consensus 357 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~ 435 (537)
+..+. +...+..+...+.+.|++++|...+++..+..+. +...+..+..++...|++++|...++++.+.+ |+. .
T Consensus 278 ~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~ 353 (656)
T PRK15174 278 QFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSK 353 (656)
T ss_pred hhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchH
Confidence 76443 6667778888888888888888888888876544 56667777888888888888888888887753 333 3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHchhc
Q 047648 436 TYNILVGALCKDGKSKKAVSLLDEMFKMEKE 466 (537)
Q Consensus 436 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 466 (537)
.+..+..++...|++++|++.|+++++..+.
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 3444566778888888888888888765433
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-21 Score=186.12 Aligned_cols=301 Identities=14% Similarity=0.125 Sum_probs=214.3
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhc
Q 047648 195 GLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPN---EVTFNTLIDGFCK 271 (537)
Q Consensus 195 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~ 271 (537)
.+...|++++|...|+++.+.+. .+..++..+...+.. .|++++|..+++.+...+..++ ...+..+...|.+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~---~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRR---RGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHH---cCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 34455666666666666665431 233455555555555 5666666666666655322111 2345666667777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHH
Q 047648 272 DENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPN----VVTSNALINGFCKKKLVEK 347 (537)
Q Consensus 272 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~ 347 (537)
.|++++|..+|+++.+.. +.+..++..++..+...|++++|.+.++.+.+.+..+. ...+..+...+...|++++
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 198 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA 198 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence 777777777777776542 33556677777777777777777777777766542221 1234566677778888888
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 348 ARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVN 427 (537)
Q Consensus 348 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 427 (537)
|...|+++.+.... +...+..+...+.+.|++++|.++++++.+.++.....++..++.+|...|++++|...++++.+
T Consensus 199 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 199 ARALLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888888776432 45677778888999999999999999988765443356778888999999999999999999988
Q ss_pred CCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCC
Q 047648 428 NGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQ---KGKLEDANGLLNELLEKGLI 504 (537)
Q Consensus 428 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~ 504 (537)
. .|+...+..++..+.+.|++++|..+++++++. .|+...++.++..+.. .|+.++++.++++|.+.++.
T Consensus 278 ~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~-----~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (389)
T PRK11788 278 E--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR-----HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLK 350 (389)
T ss_pred h--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHh
Confidence 6 366667788999999999999999999998752 5788888888877664 56899999999999988887
Q ss_pred CCHH
Q 047648 505 PNQT 508 (537)
Q Consensus 505 p~~~ 508 (537)
|++.
T Consensus 351 ~~p~ 354 (389)
T PRK11788 351 RKPR 354 (389)
T ss_pred CCCC
Confidence 7766
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.7e-20 Score=186.96 Aligned_cols=402 Identities=15% Similarity=0.032 Sum_probs=297.6
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047648 118 IIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLC 197 (537)
Q Consensus 118 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 197 (537)
.+......+.+.|++++|++.|++++.. .|+...|..+..++.+.|++++|++.++..++.... +...+..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 4556788999999999999999999885 567888999999999999999999999999987533 6778999999999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHH-------------HHH---C--------
Q 047648 198 KAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKD-------------MVE---N-------- 253 (537)
Q Consensus 198 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~-------------~~~---~-------- 253 (537)
..|++++|+..|......+...+. ....++..+.. .....++...++. ... .
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~---~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNE-QSAQAVERLLK---KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLE 281 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH---HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhh
Confidence 999999999998877654321121 11111111111 0001111111110 000 0
Q ss_pred ---CCCCCH-HHHHHHHHH---HhccCCHHHHHHHHHHHHhCC-C-CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 047648 254 ---GILPNE-VTFNTLIDG---FCKDENISAAMKVFEEMGSHG-I-AAGVVTYNSLINGLCVDGKLDEAVALRDEMMASG 324 (537)
Q Consensus 254 ---~~~p~~-~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 324 (537)
...+.. ..+..+... ....+++++|.+.|+.....+ . +.....|..+...+...|++++|+..+++.....
T Consensus 282 ~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~ 361 (615)
T TIGR00990 282 DSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD 361 (615)
T ss_pred cccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 000000 001111111 122468999999999998764 2 2345678888888999999999999999998863
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 047648 325 LKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNC 404 (537)
Q Consensus 325 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 404 (537)
+.....|..+...+...|++++|...|+++.+..+. +...|..+...+...|++++|...|++.++..+. +...+..
T Consensus 362 -P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~ 438 (615)
T TIGR00990 362 -PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQ 438 (615)
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHH
Confidence 334668888999999999999999999999887544 6788999999999999999999999999987654 6778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCC--CCHH-HHHHHHHH
Q 047648 405 LIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKW--PNIV-TYNVLIKG 481 (537)
Q Consensus 405 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~-~~~~l~~~ 481 (537)
+..++.+.|++++|+..|++.++.. +.+...++.+...+...|++++|++.|++++++.+.... .+.. .++..+..
T Consensus 439 la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~ 517 (615)
T TIGR00990 439 LGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALAL 517 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHH
Confidence 9999999999999999999999864 556789999999999999999999999999886543211 1111 12222233
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhcCCcCCccCCCCc
Q 047648 482 FCQKGKLEDANGLLNELLEKGLIPNQ-TTYQIVREEMMEKGFIPDIEGHMYN 532 (537)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~l~~ 532 (537)
+...|++++|..++++.++. .|+. ..+..+...+.+.|++++|..++..
T Consensus 518 ~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~ 567 (615)
T TIGR00990 518 FQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFER 567 (615)
T ss_pred HHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 44479999999999999884 4654 5688899999999999999776544
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.4e-19 Score=182.51 Aligned_cols=472 Identities=11% Similarity=0.022 Sum_probs=289.5
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHC--------------CCCC
Q 047648 31 TVILQLFNSDADPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKN--------------GKFT 96 (537)
Q Consensus 31 ~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~--------------g~~~ 96 (537)
.....+....++++.|+..|+.+++. .|.+..++..+..++...|++++|...++..++. +..+
T Consensus 48 f~~a~~~~~~Gd~~~A~~~l~~Al~~--dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i~~~~ 125 (987)
T PRK09782 48 LDKALKAQKNNDEATAIREFEYIHQQ--VPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAIPVEV 125 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHhccCh
Confidence 33345556668899999999999987 6677889999999999999999999887766554 4555
Q ss_pred ChHHHHHHhhhccCCCCchHHHHHHHHHH--------HHHcCCchHHHHHHHHHhhCCCCCChhhHHHH-HHHHHhCCCh
Q 047648 97 SVSTIFHALSTCSDSLCRNSIIIDMLMLA--------YVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQL-LRALVKEGKF 167 (537)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~ 167 (537)
.+..+++.+.... |.+..++..+... |.+.++..++++ .....+.|+..+.... .+.|.+.|++
T Consensus 126 kA~~~ye~l~~~~---P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~----lr~~~~~~~~~vL~L~~~rlY~~l~dw 198 (987)
T PRK09782 126 KSVTTVEELLAQQ---KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN----DATFAASPEGKTLRTDLLQRAIYLKQW 198 (987)
T ss_pred hHHHHHHHHHHhC---CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH----HhhhCCCCCcHHHHHHHHHHHHHHhCH
Confidence 6666677766654 3344444444443 444433333333 2211122233333333 5666666666
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHH
Q 047648 168 EDVEYVYKEMKRRRIELNLDSFNFVLNGLCK-AGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAV 246 (537)
Q Consensus 168 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~ 246 (537)
++|.+.+.++.+.++. +......+..+|.. .++ +++..++.. .++-+...+..+...|.+ .|+.++|.++
T Consensus 199 ~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~---~G~~~~A~~~ 269 (987)
T PRK09782 199 SQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAY---RGEKARLQHY 269 (987)
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHH---CCCHHHHHHH
Confidence 6666666666665422 33333344444444 233 444444322 111244444444444444 4444444444
Q ss_pred HHHHHHCCCC-CCHHHH---------------------------------------------------------------
Q 047648 247 FKDMVENGIL-PNEVTF--------------------------------------------------------------- 262 (537)
Q Consensus 247 ~~~~~~~~~~-p~~~~~--------------------------------------------------------------- 262 (537)
++++...... |...++
T Consensus 270 L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 349 (987)
T PRK09782 270 LIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERY 349 (987)
T ss_pred HHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHH
Confidence 4443221100 111111
Q ss_pred ------------------------------HHHHHHHhccCCHHHHHHHHHHHHhC-C-C--------------------
Q 047648 263 ------------------------------NTLIDGFCKDENISAAMKVFEEMGSH-G-I-------------------- 290 (537)
Q Consensus 263 ------------------------------~~l~~~~~~~g~~~~a~~~~~~~~~~-~-~-------------------- 290 (537)
..+.-...+.|+.++|.++|+..... + .
T Consensus 350 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 429 (987)
T PRK09782 350 AVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYL 429 (987)
T ss_pred hhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcc
Confidence 11111122344455555554444221 0 0
Q ss_pred ------------------------------------------CC--ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 047648 291 ------------------------------------------AA--GVVTYNSLINGLCVDGKLDEAVALRDEMMASGLK 326 (537)
Q Consensus 291 ------------------------------------------~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 326 (537)
++ +...|..+..++.. +++++|+..+.+.... .
T Consensus 430 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~ 506 (987)
T PRK09782 430 ATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--Q 506 (987)
T ss_pred cchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--C
Confidence 11 23334444444444 5666677766666654 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047648 327 PNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLI 406 (537)
Q Consensus 327 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 406 (537)
|+......+...+...|++++|...|+++... .|+...+..+..++.+.|++++|...+++.++..+. +...+..+.
T Consensus 507 Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La 583 (987)
T PRK09782 507 PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLH 583 (987)
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHH
Confidence 55444344445556788888888888887554 334444566677788888888888888888876532 333444444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcC
Q 047648 407 AGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKG 486 (537)
Q Consensus 407 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 486 (537)
......|++++|...+++..+.. |+...+..+..++.+.|++++|+..++++++.. +.+...+..+..++...|
T Consensus 584 ~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~----Pd~~~a~~nLG~aL~~~G 657 (987)
T PRK09782 584 AQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE----PNNSNYQAALGYALWDSG 657 (987)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCC
Confidence 44556699999999999988864 568888889999999999999999999998644 446778888888999999
Q ss_pred CHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCCcCCccCCCCccC
Q 047648 487 KLEDANGLLNELLEKGLIPN-QTTYQIVREEMMEKGFIPDIEGHMYNIS 534 (537)
Q Consensus 487 ~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~l~~~~ 534 (537)
++++|+..+++.++ ..|+ ...+..+..++...|++++|+.++...+
T Consensus 658 ~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 658 DIAQSREMLERAHK--GLPDDPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred CHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999988 4464 5678888889999999988877665443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-20 Score=182.64 Aligned_cols=304 Identities=14% Similarity=0.085 Sum_probs=227.9
Q ss_pred HHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHh
Q 047648 122 LMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELN---LDSFNFVLNGLCK 198 (537)
Q Consensus 122 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 198 (537)
....+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+...+..++ ..++..++..|.+
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3456678899999999999999874 34667888888899999999999999998887532221 2467788888999
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCC
Q 047648 199 AGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPN----EVTFNTLIDGFCKDEN 274 (537)
Q Consensus 199 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~ 274 (537)
.|++++|..+|+++.+.. +++..++..++..+.+ .|++++|.+.++.+.+.+..+. ...+..+...+.+.|+
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 195 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQ---EKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD 195 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHH---hchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC
Confidence 999999999999988753 3466788888888888 8899999999998887643322 1234566677788888
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047648 275 ISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDD 354 (537)
Q Consensus 275 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 354 (537)
+++|...|+++.+.. +.+...+..+...+.+.|++++|.+.++++...+......++..++.+|...|++++|...+++
T Consensus 196 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 196 LDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred HHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888888887653 2345567777788888888888888888887653222245677778888888888888888888
Q ss_pred HHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCC
Q 047648 355 ISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSR---EGNVEGVRNIMNELVNNGMR 431 (537)
Q Consensus 355 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~ 431 (537)
+.+.. |+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+.+++..+++++.+.++.
T Consensus 275 ~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (389)
T PRK11788 275 ALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLK 350 (389)
T ss_pred HHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHh
Confidence 77753 44455577788888888888888888887765 4677777777766553 45778888888888876665
Q ss_pred CChH
Q 047648 432 AGLV 435 (537)
Q Consensus 432 ~~~~ 435 (537)
|++.
T Consensus 351 ~~p~ 354 (389)
T PRK11788 351 RKPR 354 (389)
T ss_pred CCCC
Confidence 5554
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-19 Score=185.21 Aligned_cols=422 Identities=11% Similarity=0.048 Sum_probs=304.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHH
Q 047648 59 ASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEA 138 (537)
Q Consensus 59 ~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 138 (537)
.+-+.....-.+.+....|+.++|..++..+... .+.+...+..+...+...|++++|+++
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~-------------------~~~~a~~~~~lA~~~~~~g~~~~A~~~ 71 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVH-------------------MQLPARGYAAVAVAYRNLKQWQNSLTL 71 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------------------CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3444555566677777888888888777776642 144556677888888889999999999
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 047648 139 FKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVS 218 (537)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 218 (537)
|++.+... +.+...+..++..+...|++++|...+++..+... .+.. +..+..++...|+.++|+..++++.+..+.
T Consensus 72 ~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P-~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~ 148 (765)
T PRK10049 72 WQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAP-DKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ 148 (765)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 99888763 44566777888888888999999999988887743 3556 778888888889999999999988886422
Q ss_pred CChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHh-----ccCCH---HHHHHHHHH
Q 047648 219 PKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNE------VTFNTLIDGFC-----KDENI---SAAMKVFEE 284 (537)
Q Consensus 219 ~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~------~~~~~l~~~~~-----~~g~~---~~a~~~~~~ 284 (537)
+...+..+...+.. .+..++|+..++.... .|+. .....++.... ..+++ ++|++.++.
T Consensus 149 -~~~~~~~la~~l~~---~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ 221 (765)
T PRK10049 149 -TQQYPTEYVQALRN---NRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDA 221 (765)
T ss_pred -CHHHHHHHHHHHHH---CCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHH
Confidence 44455556666666 6888888887775543 2221 11122222222 22334 778888888
Q ss_pred HHhC-CCCCChh-hHH----HHHHHHHhCCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 285 MGSH-GIAAGVV-TYN----SLINGLCVDGKLDEAVALRDEMMASGLK-PNVVTSNALINGFCKKKLVEKARVLFDDISE 357 (537)
Q Consensus 285 ~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 357 (537)
+.+. ...|+.. .+. ..+..+...|++++|+..|+.+.+.+.+ |+. ....+..+|...|++++|...|+++.+
T Consensus 222 ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~ 300 (765)
T PRK10049 222 LEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFY 300 (765)
T ss_pred HHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 8754 1222221 111 1133456779999999999999887532 322 223357788999999999999999876
Q ss_pred cCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHH
Q 047648 358 QGLSP---SVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGV-----------LPD---VSTYNCLIAGLSREGNVEGVRN 420 (537)
Q Consensus 358 ~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~p~---~~~~~~l~~~~~~~~~~~~a~~ 420 (537)
..... .......+..++...|++++|...++.+.+..+ .|+ ...+..+...+...|+.++|++
T Consensus 301 ~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~ 380 (765)
T PRK10049 301 HPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEM 380 (765)
T ss_pred cCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHH
Confidence 53221 134456677788899999999999999887532 123 2345677788899999999999
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 421 IMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
+++++.... |.+...+..+...+...|++++|++.++++++.. +.+...+..++..+...|++++|..+++++++
T Consensus 381 ~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~----Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 381 RARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE----PRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999998874 6678899999999999999999999999998643 34567778888899999999999999999999
Q ss_pred cCCCCCHHhHHHHHHHH
Q 047648 501 KGLIPNQTTYQIVREEM 517 (537)
Q Consensus 501 ~g~~p~~~~~~~l~~~~ 517 (537)
..|+......+-+.+
T Consensus 456 --~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 456 --REPQDPGVQRLARAR 470 (765)
T ss_pred --hCCCCHHHHHHHHHH
Confidence 568877666666555
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-19 Score=181.06 Aligned_cols=360 Identities=10% Similarity=0.009 Sum_probs=285.6
Q ss_pred HHHcCCchHHHHHHHHHhhCC--CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 047648 126 YVKNMKPHLGFEAFKRAGDYG--LKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLN 203 (537)
Q Consensus 126 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 203 (537)
+.++.+++...-+|....+.. -..+..-...++..+.+.|++++|..+++........ +...+..++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHH
Confidence 345556655555554443321 0112334456677888999999999999999887544 5666677777888899999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 047648 204 KASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFE 283 (537)
Q Consensus 204 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 283 (537)
+|...++++.+..+ .+...+..+...+.. .|++++|...+++..... +.+...+..+...+...|++++|...++
T Consensus 94 ~A~~~l~~~l~~~P-~~~~a~~~la~~l~~---~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~ 168 (656)
T PRK15174 94 AVLQVVNKLLAVNV-CQPEDVLLVASVLLK---SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLAR 168 (656)
T ss_pred HHHHHHHHHHHhCC-CChHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 99999999998742 356677888888888 899999999999998763 3356788889999999999999999999
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 047648 284 EMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPS 363 (537)
Q Consensus 284 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 363 (537)
.+...... +...+..+ ..+...|++++|...++.+.+....++......+..++...|++++|...+++..+..+. +
T Consensus 169 ~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~ 245 (656)
T PRK15174 169 TQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-G 245 (656)
T ss_pred HHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-C
Confidence 88765332 33334333 347899999999999999887643344455566678889999999999999999987544 6
Q ss_pred HhHHHHHHHHHHhcCChHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHH
Q 047648 364 VITYNTLIDAYCKEGRMED----AFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNI 439 (537)
Q Consensus 364 ~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 439 (537)
...+..+...+...|++++ |...++++.+..+. +...+..+...+...|++++|...+++..+.. +.+...+..
T Consensus 246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~ 323 (656)
T PRK15174 246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAM 323 (656)
T ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 7788889999999999986 89999999987654 78899999999999999999999999999875 455678888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHchhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 440 LVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNI-VTYNVLIKGFCQKGKLEDANGLLNELLEK 501 (537)
Q Consensus 440 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (537)
+..++.+.|++++|++.|+++.+. .|+. ..+..+..++...|++++|...|++..+.
T Consensus 324 La~~l~~~G~~~eA~~~l~~al~~-----~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 324 YARALRQVGQYTAASDEFVQLARE-----KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-----CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999863 2433 34445677899999999999999999984
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-17 Score=173.00 Aligned_cols=406 Identities=8% Similarity=-0.044 Sum_probs=305.3
Q ss_pred CChHHHHH--HHhcCCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHH
Q 047648 27 TDPNTVIL--QLFNSDADPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHA 104 (537)
Q Consensus 27 ~~~~~~~~--~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~ 104 (537)
+++..+.. .+..-.++.+.|+..+...... .+.+..++..+...+...|++++|..+++..++.
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~--~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~------------ 78 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVH--MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL------------ 78 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------
Confidence 34444333 2334456788899888888753 4567777999999999999999999999998876
Q ss_pred hhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC
Q 047648 105 LSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIEL 184 (537)
Q Consensus 105 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 184 (537)
.|.++..+..++..+...|++++|+..++++.+.. +.+.. +..+..++...|+.++|...++++.+..+.
T Consensus 79 -------~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~- 148 (765)
T PRK10049 79 -------EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ- 148 (765)
T ss_pred -------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-
Confidence 15566777789999999999999999999999873 44666 888999999999999999999999998544
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh------hhHHHHHHHHhcC--CCCCCH---HHHHHHHHHHHHC
Q 047648 185 NLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKV------VTYNILIDGYCKK--GGIGKM---YKADAVFKDMVEN 253 (537)
Q Consensus 185 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~ll~~~~~~--~~~~~~---~~a~~~~~~~~~~ 253 (537)
+...+..+...+...|..+.|++.++.... .|+. .....++...... ...+++ ++|++.++.+.+.
T Consensus 149 ~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~ 225 (765)
T PRK10049 149 TQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEAL 225 (765)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhh
Confidence 666777788888899999999999987664 2221 1122222222210 002234 6788888888854
Q ss_pred -CCCCCHH-HH----HHHHHHHhccCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 047648 254 -GILPNEV-TF----NTLIDGFCKDENISAAMKVFEEMGSHGIA-AGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLK 326 (537)
Q Consensus 254 -~~~p~~~-~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 326 (537)
...|+.. .+ ...+..+...|++++|+..|+.+.+.+.+ |+. ....+...|...|++++|+..|+++......
T Consensus 226 ~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~ 304 (765)
T PRK10049 226 WHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPET 304 (765)
T ss_pred cccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCC
Confidence 1223221 11 11134456779999999999999887532 221 2223567899999999999999998865311
Q ss_pred C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------CCC---HhHHHHHHHHHHhcCChHHHHHHHHH
Q 047648 327 P---NVVTSNALINGFCKKKLVEKARVLFDDISEQGL-----------SPS---VITYNTLIDAYCKEGRMEDAFAMRNS 389 (537)
Q Consensus 327 ~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~ 389 (537)
. .......+..++...|++++|..+++.+.+..+ .|+ ...+..+...+...|++++|++++++
T Consensus 305 ~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~ 384 (765)
T PRK10049 305 IADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARE 384 (765)
T ss_pred CCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 124456667788999999999999999987532 122 23455677888999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 390 MLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 390 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
+....+. +...+..+...+...|++++|++.+++..... |.+...+...+..+...|++++|..+++++++
T Consensus 385 al~~~P~-n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 385 LAYNAPG-NQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9987655 78899999999999999999999999999875 45567778888899999999999999999986
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.8e-17 Score=163.07 Aligned_cols=446 Identities=11% Similarity=0.063 Sum_probs=322.0
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHhhcCCCCCCH-HHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhc
Q 047648 30 NTVILQLFNSDADPVLILRYFCWSTKELRASHSL-LLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTC 108 (537)
Q Consensus 30 ~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~ 108 (537)
.....++....++...|+..|+.+++. .|.+. .++ .++..+...|+.++|...++.++...
T Consensus 37 ~y~~aii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~--------------- 98 (822)
T PRK14574 37 QYDSLIIRARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM--------------- 98 (822)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC---------------
Confidence 344445666777888999999999876 33442 233 77888888899999988888776220
Q ss_pred cCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHH
Q 047648 109 SDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDS 188 (537)
Q Consensus 109 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 188 (537)
+.+......++..|...|++++|+++|+++.+.. +.+...+..++..+...++.++|++.++.+... .|+...
T Consensus 99 ----n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~ 171 (822)
T PRK14574 99 ----NISSRGLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQN 171 (822)
T ss_pred ----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHH
Confidence 2333444455778889999999999999999875 335677778888899999999999999998877 445555
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHH------
Q 047648 189 FNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTF------ 262 (537)
Q Consensus 189 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~------ 262 (537)
+..++..+...++..+|++.++++.+.. +-+...+..+..++.+ .|-...|+++.++-... +.+....+
T Consensus 172 ~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~---~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~ 246 (822)
T PRK14574 172 YMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQR---NRIVEPALRLAKENPNL-VSAEHYRQLERDAA 246 (822)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH---cCCcHHHHHHHHhCccc-cCHHHHHHHHHHHH
Confidence 5445555545667766999999999874 2256667778888888 78777887777653321 11111111
Q ss_pred HHHHHHH---h--ccCC---HHHHHHHHHHHHhC-CCCCC-hhhHH----HHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Q 047648 263 NTLIDGF---C--KDEN---ISAAMKVFEEMGSH-GIAAG-VVTYN----SLINGLCVDGKLDEAVALRDEMMASGLKPN 328 (537)
Q Consensus 263 ~~l~~~~---~--~~g~---~~~a~~~~~~~~~~-~~~~~-~~~~~----~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 328 (537)
..+++.- . ...+ .+.|+.-++.+... +..|. ...|. -.+-++...+++.++++.|+.+...+.+..
T Consensus 247 a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P 326 (822)
T PRK14574 247 AEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMP 326 (822)
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCC
Confidence 1111111 0 1122 34455556665542 11132 22221 234577889999999999999998886656
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--------
Q 047648 329 VVTSNALINGFCKKKLVEKARVLFDDISEQGL-----SPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGV-------- 395 (537)
Q Consensus 329 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------- 395 (537)
..+-..+.++|...+++++|..++..+..... .++......|.-+|...+++++|..+++.+.+..+
T Consensus 327 ~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~ 406 (822)
T PRK14574 327 DYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGL 406 (822)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCC
Confidence 67889999999999999999999999876531 22344457788899999999999999999987422
Q ss_pred ---CCC--H-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCC
Q 047648 396 ---LPD--V-STYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKW 469 (537)
Q Consensus 396 ---~p~--~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 469 (537)
.|+ - ..+..++..+...|++.+|++.++++.... |-|......+...+...|.+.+|.+.++.+.... +
T Consensus 407 ~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~----P 481 (822)
T PRK14574 407 PGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA----P 481 (822)
T ss_pred CCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC----C
Confidence 122 2 234556777889999999999999998875 7789999999999999999999999998876432 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHH
Q 047648 470 PNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQI 512 (537)
Q Consensus 470 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 512 (537)
-+..+....+.++...|++++|..+.+.+.+ ..|+......
T Consensus 482 ~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~--~~Pe~~~~~~ 522 (822)
T PRK14574 482 RSLILERAQAETAMALQEWHQMELLTDDVIS--RSPEDIPSQE 522 (822)
T ss_pred ccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--hCCCchhHHH
Confidence 4677788888999999999999999999988 5576654444
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-16 Score=164.30 Aligned_cols=447 Identities=12% Similarity=0.054 Sum_probs=308.1
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCh--HHHHHHhhh---------cc-CC
Q 047648 44 VLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSV--STIFHALST---------CS-DS 111 (537)
Q Consensus 44 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~--~~~~~~~~~---------~~-~~ 111 (537)
+.|+.... .......++...+......++...+++++|..++..+.+.+..... ..+-..... .. +.
T Consensus 164 eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~ 242 (987)
T PRK09782 164 PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQG 242 (987)
T ss_pred HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchh
Confidence 44444444 2222223344445555689999999999999999999988544322 111111111 01 12
Q ss_pred CCchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCC-CChhhH------------------------------HHHHHH
Q 047648 112 LCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLK-SSVLSC------------------------------NQLLRA 160 (537)
Q Consensus 112 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~------------------------------~~l~~~ 160 (537)
...++.++..++..|.+.|+.++|.++++++...... |...+| -.++..
T Consensus 243 lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (987)
T PRK09782 243 IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPV 322 (987)
T ss_pred cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHH
Confidence 1246678889999999999999999999987654211 222211 112344
Q ss_pred HHhCCChhHHHHHHH-----------------------------HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 047648 161 LVKEGKFEDVEYVYK-----------------------------EMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMED 211 (537)
Q Consensus 161 ~~~~~~~~~a~~~~~-----------------------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 211 (537)
+.+.++++.+.++.. .|.+.. +-+......+.-...+.|+.++|.++|+.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~ 401 (987)
T PRK09782 323 LLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQ 401 (987)
T ss_pred HHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 455555554444422 111110 11444444455556678999999999998
Q ss_pred HHhC-C-CCCChhhHHHHHHHHhcCCCCCCHHHHHHH----------------------HHHHHHC-CC-CC--CHHHHH
Q 047648 212 MKSL-G-VSPKVVTYNILIDGYCKKGGIGKMYKADAV----------------------FKDMVEN-GI-LP--NEVTFN 263 (537)
Q Consensus 212 ~~~~-~-~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~----------------------~~~~~~~-~~-~p--~~~~~~ 263 (537)
.... + ..++.....-++..|.+.+......++..+ ....... +. ++ +...|.
T Consensus 402 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~ 481 (987)
T PRK09782 402 RYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWN 481 (987)
T ss_pred hcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHH
Confidence 8763 1 123344555778888875432224444333 1111111 11 33 567788
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 047648 264 TLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKK 343 (537)
Q Consensus 264 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 343 (537)
.+..++.. +++++|...+.+.... .|+......+...+...|++++|...++++... +|+...+..+...+.+.|
T Consensus 482 ~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~G 556 (987)
T PRK09782 482 RLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAG 556 (987)
T ss_pred HHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCC
Confidence 88877776 8999999988887765 355444444455557899999999999998664 455556677788889999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047648 344 LVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMN 423 (537)
Q Consensus 344 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 423 (537)
+.++|...++...+.++. +...+..+.......|++++|...+++.++.. |+...+..+..++.+.|+.++|+..++
T Consensus 557 d~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~ 633 (987)
T PRK09782 557 NGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLR 633 (987)
T ss_pred CHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999887533 33344444445556799999999999999864 568889999999999999999999999
Q ss_pred HHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 047648 424 ELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGL 503 (537)
Q Consensus 424 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 503 (537)
+..+.. |.+...++.+..++...|++++|++.++++++.. +-+...+..+..++...|++++|...+++.++ +
T Consensus 634 ~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~----P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l 706 (987)
T PRK09782 634 AALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL----PDDPALIRQLAYVNQRLDDMAATQHYARLVID--D 706 (987)
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--c
Confidence 999985 5667888999999999999999999999998743 44778999999999999999999999999998 5
Q ss_pred CCCH
Q 047648 504 IPNQ 507 (537)
Q Consensus 504 ~p~~ 507 (537)
.|+.
T Consensus 707 ~P~~ 710 (987)
T PRK09782 707 IDNQ 710 (987)
T ss_pred CCCC
Confidence 5765
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-16 Score=161.78 Aligned_cols=440 Identities=12% Similarity=0.073 Sum_probs=319.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchH-HHHHHHHHHHHHcCCchHHHH
Q 047648 59 ASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNS-IIIDMLMLAYVKNMKPHLGFE 137 (537)
Q Consensus 59 ~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~ 137 (537)
.|..+.+.-.-+-...+.|+++.|...++..++.. |.++ .++ .++..+...|+.++|+.
T Consensus 30 ~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~-------------------P~~~~av~-dll~l~~~~G~~~~A~~ 89 (822)
T PRK14574 30 NPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAG-------------------PLQSGQVD-DWLQIAGWAGRDQEVID 89 (822)
T ss_pred CccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-------------------ccchhhHH-HHHHHHHHcCCcHHHHH
Confidence 33344444445555668999999999998888762 2222 233 77888889999999999
Q ss_pred HHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 047648 138 AFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGV 217 (537)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 217 (537)
.+++.... -+.+......+...+...|++++|.++|+++.+..+. +...+..++..+...++.++|++.++++...
T Consensus 90 ~~eka~~p-~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~-- 165 (822)
T PRK14574 90 VYERYQSS-MNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER-- 165 (822)
T ss_pred HHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--
Confidence 99999831 1223333444466888899999999999999998654 6778888889999999999999999999886
Q ss_pred CCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhh-
Q 047648 218 SPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVT- 296 (537)
Q Consensus 218 ~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~- 296 (537)
.|+...+..+ ++...+ .++..+|++.++++.+.+ +-+...+..+...+.+.|-...|.++..+-... +.+....
T Consensus 166 dp~~~~~l~l--ayL~~~-~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~ 240 (822)
T PRK14574 166 DPTVQNYMTL--SYLNRA-TDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQ 240 (822)
T ss_pred CcchHHHHHH--HHHHHh-cchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHH
Confidence 4565556444 443322 566767999999999874 336777888899999999999998877654422 1111111
Q ss_pred -----HHHHHHHH---H--hCCC---HHHHHHHHHHHHHc-C-CCCCHHH----HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 297 -----YNSLINGL---C--VDGK---LDEAVALRDEMMAS-G-LKPNVVT----SNALINGFCKKKLVEKARVLFDDISE 357 (537)
Q Consensus 297 -----~~~l~~~~---~--~~~~---~~~A~~~~~~~~~~-~-~~~~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~ 357 (537)
...+++.- . ..++ .+.|+.-++.+... + .++.... ..-.+-++...+++.++++.|+.+..
T Consensus 241 l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~ 320 (822)
T PRK14574 241 LERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA 320 (822)
T ss_pred HHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Confidence 11111110 0 1223 34555555665542 1 1222222 22345667788999999999999998
Q ss_pred cCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--
Q 047648 358 QGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGV-----LPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGM-- 430 (537)
Q Consensus 358 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 430 (537)
.+.+....+-.++.++|...+++++|..+++.+..... .++......|..++...+++++|..+++.+.+...
T Consensus 321 ~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~ 400 (822)
T PRK14574 321 EGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQ 400 (822)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcE
Confidence 87665666888999999999999999999999976531 23444467889999999999999999999998421
Q ss_pred ---------CCC---hHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047648 431 ---------RAG---LVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNEL 498 (537)
Q Consensus 431 ---------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 498 (537)
.|+ ...+..++..+...|++.+|.+.++++... .+-|......+...+...|++.+|.+.++..
T Consensus 401 ~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~----aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a 476 (822)
T PRK14574 401 VGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST----APANQNLRIALASIYLARDLPRKAEQELKAV 476 (822)
T ss_pred EeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 122 133456678899999999999999999752 2558899999999999999999999999888
Q ss_pred HHcCCCCCH-HhHHHHHHHHHhcCCcCCccCCCCcc
Q 047648 499 LEKGLIPNQ-TTYQIVREEMMEKGFIPDIEGHMYNI 533 (537)
Q Consensus 499 ~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~l~~~ 533 (537)
.. +.|+. .+......++...|.+++|+..+.++
T Consensus 477 ~~--l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 477 ES--LAPRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred hh--hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 77 45764 56667778888899999987776544
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-17 Score=161.22 Aligned_cols=451 Identities=12% Similarity=0.080 Sum_probs=261.4
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHH
Q 047648 45 LILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLML 124 (537)
Q Consensus 45 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 124 (537)
.++..+..+.+. .+.++.+.+.|.+-+.-.++++.++.+...+..... . .+.-...|.-+.+
T Consensus 254 ~~~~ll~~ay~~--n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~-~---------------~~~~aes~Y~~gR 315 (1018)
T KOG2002|consen 254 KGVQLLQRAYKE--NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE-N---------------KSIKAESFYQLGR 315 (1018)
T ss_pred HHHHHHHHHHhh--cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh-h---------------hHHHHHHHHHHHH
Confidence 355555555554 456667778888888888888888888777776521 0 0122366888999
Q ss_pred HHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----
Q 047648 125 AYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAG---- 200 (537)
Q Consensus 125 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---- 200 (537)
+|-..|++++|...|....+......+..+..+...+.+.|+++.+...|+.+.+.. +-+..+...+...|...+
T Consensus 316 s~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~ 394 (1018)
T KOG2002|consen 316 SYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQE 394 (1018)
T ss_pred HHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhH
Confidence 999999999999999999886433224556778899999999999999999999874 336777778888887775
Q ss_pred ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHhccCCHH
Q 047648 201 KLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDM----VENGILPNEVTFNTLIDGFCKDENIS 276 (537)
Q Consensus 201 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~----~~~~~~p~~~~~~~l~~~~~~~g~~~ 276 (537)
..+.|..++.+..+.. +.|...|-.+...+.. ++...++..|... ...+-.+.+...|.+...+...|++.
T Consensus 395 ~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~----~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~ 469 (1018)
T KOG2002|consen 395 KRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ----TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIE 469 (1018)
T ss_pred HHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh----cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChH
Confidence 5677777777777654 4477788888888876 4444446555443 34555677888999999999999999
Q ss_pred HHHHHHHHHHhC---CCCCCh------hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 047648 277 AAMKVFEEMGSH---GIAAGV------VTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEK 347 (537)
Q Consensus 277 ~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 347 (537)
+|...|...... ...++. .+-..+...+-..++++.|.+.|..+.+.. +.-...|..++......+...+
T Consensus 470 ~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~e 548 (1018)
T KOG2002|consen 470 KALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYE 548 (1018)
T ss_pred HHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHH
Confidence 999999987654 112222 223334555666677888888887777642 1222333333333333445555
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh------------cCC
Q 047648 348 ARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDR-GVLPDVSTYNCLIAGLSR------------EGN 414 (537)
Q Consensus 348 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~------------~~~ 414 (537)
|...+......+- .++..+..+...+.+...+..|.+-|..+.+. ...+|..+.-+|.+.|.. .+.
T Consensus 549 a~~~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~ 627 (1018)
T KOG2002|consen 549 ASLLLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKH 627 (1018)
T ss_pred HHHHHHHHHhccc-CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHH
Confidence 5555555544321 13333443444444444444444433333322 111233333333333321 122
Q ss_pred HHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047648 415 VEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGL 494 (537)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 494 (537)
.++|+++|.+.++.. |-|...-|.+.-+++..|++..|+.+|.++.+.. ..+..+|..+..+|...|++-.|+++
T Consensus 628 ~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~----~~~~dv~lNlah~~~e~~qy~~AIqm 702 (1018)
T KOG2002|consen 628 QEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT----SDFEDVWLNLAHCYVEQGQYRLAIQM 702 (1018)
T ss_pred HHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH----hhCCceeeeHHHHHHHHHHHHHHHHH
Confidence 334444444444432 3334444444444444444444444444443311 11223444444444444444444444
Q ss_pred HHHHHHcCC-CCCHHhHHHHHHHHHhcCCcCCc
Q 047648 495 LNELLEKGL-IPNQTTYQIVREEMMEKGFIPDI 526 (537)
Q Consensus 495 ~~~~~~~g~-~p~~~~~~~l~~~~~~~g~~~~a 526 (537)
|+...+.-. .-+......+.+++.+.|.+.++
T Consensus 703 Ye~~lkkf~~~~~~~vl~~Lara~y~~~~~~ea 735 (1018)
T KOG2002|consen 703 YENCLKKFYKKNRSEVLHYLARAWYEAGKLQEA 735 (1018)
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHH
Confidence 444443211 22333444444444444444443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.3e-16 Score=152.59 Aligned_cols=448 Identities=15% Similarity=0.090 Sum_probs=337.1
Q ss_pred HHHHhcCCCChHHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCC
Q 047648 33 ILQLFNSDADPVLILRYFCWSTKELRA-SHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDS 111 (537)
Q Consensus 33 ~~~l~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~ 111 (537)
++.-+-..++...+..+...++...-. +.-...|-.+...+-..|++++|...+-...+..+
T Consensus 276 LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~----------------- 338 (1018)
T KOG2002|consen 276 LANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADN----------------- 338 (1018)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCC-----------------
Confidence 334445567888888888888765321 23345688999999999999999998877766521
Q ss_pred CCch-HHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCC----ChhHHHHHHHHHHhCCCCCCH
Q 047648 112 LCRN-SIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEG----KFEDVEYVYKEMKRRRIELNL 186 (537)
Q Consensus 112 ~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~ 186 (537)
.+ ...+--|.+.|...|+++.+...|+++.+.. +.+..+...+...|...+ ..+.|..+..+..+.. +.|.
T Consensus 339 --d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~ 414 (1018)
T KOG2002|consen 339 --DNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDS 414 (1018)
T ss_pred --CCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccH
Confidence 11 2334468899999999999999999999873 556677777777777665 4677788887777764 4488
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHH----hCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHC---CCC---
Q 047648 187 DSFNFVLNGLCKAGKLNKASDIMEDMK----SLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVEN---GIL--- 256 (537)
Q Consensus 187 ~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~---~~~--- 256 (537)
..|-.+...+-.. +...++..|.... ..+..+.+...|.+...+.. .|++.+|...|+..... ...
T Consensus 415 ~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~---~g~~~~A~~~f~~A~~~~~~~~n~de 490 (1018)
T KOG2002|consen 415 EAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFR---LGNIEKALEHFKSALGKLLEVANKDE 490 (1018)
T ss_pred HHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHH---hcChHHHHHHHHHHhhhhhhhcCccc
Confidence 8888888777554 4444476666543 44555778888999988888 89999999999988765 112
Q ss_pred ---CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 047648 257 ---PNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAG-VVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTS 332 (537)
Q Consensus 257 ---p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 332 (537)
++..+-..+....-..++++.|.+.|..+.+. .|. +..|.-+.-..-..+...+|...+....... ..++..+
T Consensus 491 ~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~ar 567 (1018)
T KOG2002|consen 491 GKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNAR 567 (1018)
T ss_pred cccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHH
Confidence 23333445566666778999999999999886 344 3344444433345678889999999988754 5667777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHh------------cCChHHHHHHHHHHHhCCCCCCH
Q 047648 333 NALINGFCKKKLVEKARVLFDDISEQ-GLSPSVITYNTLIDAYCK------------EGRMEDAFAMRNSMLDRGVLPDV 399 (537)
Q Consensus 333 ~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~p~~ 399 (537)
+.+...+.+...+..|..-|..+.+. ...+|+.+..+|...|.+ .+..++|+++|.++++..+. |.
T Consensus 568 sl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~ 646 (1018)
T KOG2002|consen 568 SLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NM 646 (1018)
T ss_pred HHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hh
Confidence 78888999999999998877776554 223577777777776653 24578899999999998766 88
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHH
Q 047648 400 STYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLI 479 (537)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ 479 (537)
..-+.+.-+++..|++..|..+|.+..+.. .....+|..+.++|..+|++..|+++|+...+ +.....++.+...|.
T Consensus 647 yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lk--kf~~~~~~~vl~~La 723 (1018)
T KOG2002|consen 647 YAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLK--KFYKKNRSEVLHYLA 723 (1018)
T ss_pred hhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHH--HhcccCCHHHHHHHH
Confidence 888999999999999999999999999875 34567899999999999999999999999986 333456888999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHH
Q 047648 480 KGFCQKGKLEDANGLLNELLEKGLIPNQTTYQI 512 (537)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 512 (537)
+++.+.|++.+|.+.+.........-....|+.
T Consensus 724 ra~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~ 756 (1018)
T KOG2002|consen 724 RAWYEAGKLQEAKEALLKARHLAPSNTSVKFNL 756 (1018)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCCccchHHhHH
Confidence 999999999999999999988443322333443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.6e-15 Score=132.43 Aligned_cols=348 Identities=15% Similarity=0.191 Sum_probs=251.9
Q ss_pred CCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHH
Q 047648 148 KSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNIL 227 (537)
Q Consensus 148 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 227 (537)
+.+..+|..+|.++++--..+.|.++|.+......+.+..+||.+|.+-+-..+ .+++.+|.+..+.||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHH
Confidence 456778999999999999999999999998888888899999999877544332 7888999988899999999999
Q ss_pred HHHHhcCCCCCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH-HHHHHHHHHhC----CC----CCCh
Q 047648 228 IDGYCKKGGIGKMYK----ADAVFKDMVENGILPNEVTFNTLIDGFCKDENISA-AMKVFEEMGSH----GI----AAGV 294 (537)
Q Consensus 228 l~~~~~~~~~~~~~~----a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~----~~----~~~~ 294 (537)
+++..+ .|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++... .+ +.|.
T Consensus 280 L~c~ak---fg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~ 356 (625)
T KOG4422|consen 280 LSCAAK---FGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDN 356 (625)
T ss_pred HHHHHH---hcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchh
Confidence 999998 776654 56788889999999999999999999988887644 44555555432 12 2234
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHcC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHH
Q 047648 295 VTYNSLINGLCVDGKLDEAVALRDEMMASG----LKPN---VVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITY 367 (537)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 367 (537)
.-|...|..|.+..+.+-|.++..-+.... +.|+ ..-|..+....|.....+.....|+.|.-.-.-|+..+.
T Consensus 357 ~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m 436 (625)
T KOG4422|consen 357 KFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTM 436 (625)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhH
Confidence 556777888888888888888776654321 2232 234566777788888888889999998877677788888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CH-------------HHHHHH-------HHHHH
Q 047648 368 NTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREG-NV-------------EGVRNI-------MNELV 426 (537)
Q Consensus 368 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~-------------~~a~~~-------~~~~~ 426 (537)
..++++..-.|+++-.-++|.+++..|..-+.....-++..+++.. .. +-|..+ -.++.
T Consensus 437 ~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r 516 (625)
T KOG4422|consen 437 IHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQR 516 (625)
T ss_pred HHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 8888988888999988888888887765444444444444444433 10 001111 12233
Q ss_pred HCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc-hhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 047648 427 NNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKM-EKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLI 504 (537)
Q Consensus 427 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~ 504 (537)
+. .......+...-.+.+.|..++|.++|.-+.+- .+-...|......-++..-.+.+.+..|+.+++-|...+..
T Consensus 517 ~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 517 AQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred hc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 32 445567788888899999999999999988641 11112333444446666777889999999999999876543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-16 Score=142.87 Aligned_cols=452 Identities=12% Similarity=0.083 Sum_probs=313.5
Q ss_pred ChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHH
Q 047648 42 DPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDM 121 (537)
Q Consensus 42 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (537)
-...|+..++.+.++.-++....+--.+.+++.+.+.|.+|.+++++.+.+-. ... + .....+.+.
T Consensus 216 m~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvp--sin---k---------~~rikil~n 281 (840)
T KOG2003|consen 216 MTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVP--SIN---K---------DMRIKILNN 281 (840)
T ss_pred HHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhcc--ccc---h---------hhHHHHHhh
Confidence 34558999999999888888888888889999999999999999999886511 110 0 111245667
Q ss_pred HHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCC------------CCHHHH
Q 047648 122 LMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIE------------LNLDSF 189 (537)
Q Consensus 122 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~~~ 189 (537)
+...+.+.|+++.|+..|+.+.+. .|+..+-..|+-++..-|+.++..+.|.+|+..... |+....
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 778899999999999999998875 567665444555555678999999999999765322 233333
Q ss_pred HHHHH-----HHHhcCChhHHHHHH---HHHHhCCCCCChhh---H----------H--------HHHHHHhcCCCCCCH
Q 047648 190 NFVLN-----GLCKAGKLNKASDIM---EDMKSLGVSPKVVT---Y----------N--------ILIDGYCKKGGIGKM 240 (537)
Q Consensus 190 ~~l~~-----~~~~~g~~~~a~~~~---~~~~~~~~~~~~~~---~----------~--------~ll~~~~~~~~~~~~ 240 (537)
+-.+. -.-+.+ -..|.+.+ -+++.--+.|+-.. | . .-...+.+ .|++
T Consensus 360 ~eai~nd~lk~~ek~~-ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk---~~d~ 435 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKEN-KADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLK---NGDI 435 (840)
T ss_pred HHHHhhHHHHHHHHhh-hhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHh---ccCH
Confidence 32222 121111 11222222 12221112222110 0 0 01123445 7889
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hc-cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHH
Q 047648 241 YKADAVFKDMVENGILPNEVTFNTLIDGF-CK-DENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRD 318 (537)
Q Consensus 241 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 318 (537)
+.|+++++-+.+.+-..-+..-+.|-..+ .+ -.++..|.++-+...... .-+......-.+....+|++++|.+.++
T Consensus 436 ~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~yk 514 (840)
T KOG2003|consen 436 EGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYK 514 (840)
T ss_pred HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHH
Confidence 99999988887764333333333333222 22 346777777777665432 1133333333344556899999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 047648 319 EMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPD 398 (537)
Q Consensus 319 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 398 (537)
+.+...-.-....|+ +.-.+-..|++++|+..|-++... +..+..++..+...|-...+...|++++-+.... ++.|
T Consensus 515 eal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~d 591 (840)
T KOG2003|consen 515 EALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPND 591 (840)
T ss_pred HHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCC
Confidence 998754222222232 334466789999999999887554 2237778888999999999999999999888776 4558
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHH
Q 047648 399 VSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVL 478 (537)
Q Consensus 399 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 478 (537)
+.++..|...|-+.|+-.+|.+.+-.--+. ++-+..+...|...|....-+++|+..|+++. -+.|+..-|..+
T Consensus 592 p~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa-----liqp~~~kwqlm 665 (840)
T KOG2003|consen 592 PAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA-----LIQPNQSKWQLM 665 (840)
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH-----hcCccHHHHHHH
Confidence 999999999999999999999887665554 57788999999999999999999999999984 357999999999
Q ss_pred HHHH-HhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCcC
Q 047648 479 IKGF-CQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMMEKGFIP 524 (537)
Q Consensus 479 ~~~~-~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~ 524 (537)
+..| .+.|+++.|.++++..-.+ ++-|...+..+++.+...|..+
T Consensus 666 iasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 666 IASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccchh
Confidence 8665 5689999999999998763 6668889999999998888643
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-13 Score=122.68 Aligned_cols=341 Identities=16% Similarity=0.194 Sum_probs=262.4
Q ss_pred CchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 047648 113 CRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFV 192 (537)
Q Consensus 113 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 192 (537)
|.++.++..+|.++++--+.+.|.++|++......+.+..+||.+|.+-.-. .-.++..+|....+.||..|||++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHH
Confidence 5677899999999999999999999999999888899999999999865433 338899999999999999999999
Q ss_pred HHHHHhcCChhH----HHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHH-HHHHHHHHHHH----CCCCC----CH
Q 047648 193 LNGLCKAGKLNK----ASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMY-KADAVFKDMVE----NGILP----NE 259 (537)
Q Consensus 193 ~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~-~a~~~~~~~~~----~~~~p----~~ 259 (537)
+.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++ .++.. -+..++.++.. +.+.| |.
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~r---e~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~ 356 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKR---ESDPQKVASSWINDIQNSLTGKTFKPITPTDN 356 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcc---cCCchhhhHHHHHHHHHhhccCcccCCCCchh
Confidence 999999998875 56788899999999999999999999999 44443 34455555443 22222 44
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhCC----CCCC---hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 047648 260 VTFNTLIDGFCKDENISAAMKVFEEMGSHG----IAAG---VVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTS 332 (537)
Q Consensus 260 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 332 (537)
..|...|..|.+..+.+-|.++..-+.... +.|+ ..-|..+....++....+.....|+.|+-+-+-|+..+.
T Consensus 357 ~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m 436 (625)
T KOG4422|consen 357 KFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTM 436 (625)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhH
Confidence 567788888999999999988876664421 3333 234667788889999999999999999988888999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC-Ch--------H-----HHHHHH-------HHHH
Q 047648 333 NALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEG-RM--------E-----DAFAMR-------NSML 391 (537)
Q Consensus 333 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~--------~-----~A~~~~-------~~~~ 391 (537)
..++++....+.++-..+++.++...|...+.....-++..+++.. ++ . -|..++ .++.
T Consensus 437 ~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r 516 (625)
T KOG4422|consen 437 IHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQR 516 (625)
T ss_pred HHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 9999999999999999999999988876655555555555555544 11 0 111121 1222
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 392 DRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGM----RAGLVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 392 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
. ........+.+.-.+.+.|..++|.+++..+.+.+- .|......-+++.-...+++..|..+++-+..
T Consensus 517 ~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~ 589 (625)
T KOG4422|consen 517 A--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASA 589 (625)
T ss_pred h--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 2 233556677788888999999999999999966532 23334445667777888889999999998864
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-13 Score=132.49 Aligned_cols=327 Identities=13% Similarity=0.100 Sum_probs=158.2
Q ss_pred HHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChh
Q 047648 73 LVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVL 152 (537)
Q Consensus 73 ~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 152 (537)
+...|++++|..++.+.++. .|.++..|..|...|-+.|+.++++..+-.+...+ |.|..
T Consensus 149 lfarg~~eeA~~i~~EvIkq-------------------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e 208 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQ-------------------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYE 208 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHh-------------------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChH
Confidence 33445666666666555555 14455566666666666666666665555554443 33445
Q ss_pred hHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHH----HHH
Q 047648 153 SCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYN----ILI 228 (537)
Q Consensus 153 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~ll 228 (537)
.|..+.....+.|.++.|.-.|.+.++..+. +...+---+..|-+.|+...|.+-|.++.....+.|..-.. ..+
T Consensus 209 ~W~~ladls~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~ 287 (895)
T KOG2076|consen 209 LWKRLADLSEQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVA 287 (895)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHH
Confidence 5666666666666666666666666655322 33333344455556666666666666665543211111111 122
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC-----------------
Q 047648 229 DGYCKKGGIGKMYKADAVFKDMVENG-ILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGI----------------- 290 (537)
Q Consensus 229 ~~~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----------------- 290 (537)
..+.. .++-+.|++.+......+ -..+...++.++..+.+...++.+......+.....
T Consensus 288 ~~~~~---~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~ 364 (895)
T KOG2076|consen 288 HYFIT---HNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEP 364 (895)
T ss_pred HHHHH---hhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccc
Confidence 33333 333355555555554421 112334455555555555556655555555443111
Q ss_pred ----------CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 291 ----------AAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGL--KPNVVTSNALINGFCKKKLVEKARVLFDDISEQ 358 (537)
Q Consensus 291 ----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 358 (537)
.++... -.++-++.+....+....+...+..... .-+...|.-+..++...|++..|..+|..+...
T Consensus 365 ~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~ 443 (895)
T KOG2076|consen 365 NALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR 443 (895)
T ss_pred cccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC
Confidence 111111 0111222233333333333333333332 223344555555555555555555555555544
Q ss_pred CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047648 359 GLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNEL 425 (537)
Q Consensus 359 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 425 (537)
...-+...|-.+..+|...|.++.|.+.++.++...+. +...-..|...+.+.|+.++|.+++..+
T Consensus 444 ~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 444 EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence 33334455555555555555555555555555554322 3334444444555555555555555553
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.1e-12 Score=125.72 Aligned_cols=438 Identities=14% Similarity=0.046 Sum_probs=254.2
Q ss_pred hcCCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchH
Q 047648 37 FNSDADPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNS 116 (537)
Q Consensus 37 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 116 (537)
+...++.+.|.+++.-++++ .|-....|..|..++-..|+.+++....-...-. .|.+.
T Consensus 149 lfarg~~eeA~~i~~EvIkq--dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-------------------~p~d~ 207 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQ--DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-------------------NPKDY 207 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-------------------CCCCh
Confidence 33447889999999999998 6778888999999999999999887665443332 14445
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHH----HH
Q 047648 117 IIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFN----FV 192 (537)
Q Consensus 117 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l 192 (537)
..|-.+.....+.|.+++|.-.|.++++.. |++...+---+..|-+.|+...|.+.|.++.....+.|..-+. .+
T Consensus 208 e~W~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~ 286 (895)
T KOG2076|consen 208 ELWKRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRV 286 (895)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHH
Confidence 667777777777777777777777777764 3344444445566677777777777777777664332322222 23
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCC-CCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCC---------------
Q 047648 193 LNGLCKAGKLNKASDIMEDMKSLG-VSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGIL--------------- 256 (537)
Q Consensus 193 ~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~--------------- 256 (537)
+..+...++-+.|.+.++.....+ -..+...++.++..+.+ ...++.+...+..+......
T Consensus 287 ~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~---~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~ 363 (895)
T KOG2076|consen 287 AHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLK---NKQSDKALMKIVDDRNRESEKDDSEWDTDERRREE 363 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH---hHHHHHhhHHHHHHhccccCCChhhhhhhhhcccc
Confidence 445555666677777777665521 12344556666666666 56666666666555541111
Q ss_pred ------------CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 047648 257 ------------PNEVTFNTLIDGFCKDENISAAMKVFEEMGSHG--IAAGVVTYNSLINGLCVDGKLDEAVALRDEMMA 322 (537)
Q Consensus 257 ------------p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 322 (537)
++... ..++-++.+.+..+....+........ +.-+...|.-+..++.+.|++.+|+.+|..+..
T Consensus 364 ~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~ 442 (895)
T KOG2076|consen 364 PNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN 442 (895)
T ss_pred ccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 11111 112223333333333333333333333 223445566666777777777777777777766
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC--------C
Q 047648 323 SGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDR--------G 394 (537)
Q Consensus 323 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~ 394 (537)
.....+...|-.+..+|...|..+.|...|..+....+. +...-..|...+.+.|++++|.+.+..+... +
T Consensus 443 ~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a 521 (895)
T KOG2076|consen 443 REGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACA 521 (895)
T ss_pred CccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhcc
Confidence 544445566667777777777777777777776665322 4444555666666777777777776664421 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----------------------------------------------
Q 047648 395 VLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNN---------------------------------------------- 428 (537)
Q Consensus 395 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------------------------------------- 428 (537)
..|+..........+...|+.++-..+-..|+..
T Consensus 522 ~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 601 (895)
T KOG2076|consen 522 WEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNV 601 (895)
T ss_pred ccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHH
Confidence 2333444444444455555554433333322210
Q ss_pred -----------------CCCCC--hHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCH--HHHHHHHHHHHhcCC
Q 047648 429 -----------------GMRAG--LVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNI--VTYNVLIKGFCQKGK 487 (537)
Q Consensus 429 -----------------~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~ 487 (537)
++..+ -..+.-++.++++.+.+++|..+...+.+.......+.. ..=...+.+.+..++
T Consensus 602 ~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d 681 (895)
T KOG2076|consen 602 MEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARD 681 (895)
T ss_pred hhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCC
Confidence 00000 011245566777778888888887777653222111111 122334455667788
Q ss_pred HHHHHHHHHHHHHc
Q 047648 488 LEDANGLLNELLEK 501 (537)
Q Consensus 488 ~~~A~~~~~~~~~~ 501 (537)
+..|...++.|...
T Consensus 682 ~~~a~~~lR~~i~~ 695 (895)
T KOG2076|consen 682 PGDAFSYLRSVITQ 695 (895)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888877764
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1e-11 Score=116.64 Aligned_cols=401 Identities=12% Similarity=0.004 Sum_probs=217.9
Q ss_pred CchHHHHHHHHHHHHHcCCchHHHHHHHHHh----hCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCC--CCH
Q 047648 113 CRNSIIIDMLMLAYVKNMKPHLGFEAFKRAG----DYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIE--LNL 186 (537)
Q Consensus 113 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~ 186 (537)
|.+..+|-+-...=-++|+.+...++..+-. ..|+..+...|-.=...|-..|..-.+..+....+..|+. ...
T Consensus 437 ptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~ 516 (913)
T KOG0495|consen 437 PTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRK 516 (913)
T ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhH
Confidence 4455556555555555666655555554432 2355555555655555666666666666666665555543 123
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047648 187 DSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLI 266 (537)
Q Consensus 187 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 266 (537)
.||+.-...|.+.+.++-|..+|...++.- +-+...|......=-. .|..++...+|++.... ++-....|....
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~---hgt~Esl~Allqkav~~-~pkae~lwlM~a 591 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKS---HGTRESLEALLQKAVEQ-CPKAEILWLMYA 591 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHh---cCcHHHHHHHHHHHHHh-CCcchhHHHHHH
Confidence 355555666666666666666666655542 2233344433332222 55566666666666554 222334444445
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 047648 267 DGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVE 346 (537)
Q Consensus 267 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 346 (537)
..+-..|++..|..++....+.... +...|.+.+.....+.+++.|..+|.+.... .|+...|.--+...--.++.+
T Consensus 592 ke~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~e 668 (913)
T KOG0495|consen 592 KEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVE 668 (913)
T ss_pred HHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHH
Confidence 5555566666666666666554322 4555666666666666666666666665553 345555544444444455566
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047648 347 KARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELV 426 (537)
Q Consensus 347 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 426 (537)
+|.+++++..+.- +.-.-.|-.+.+.+-+.++.+.|.+.|..-.+.- +-....|-.+...-.+.|.+-.|..++++..
T Consensus 669 eA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c-P~~ipLWllLakleEk~~~~~rAR~ildrar 746 (913)
T KOG0495|consen 669 EALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC-PNSIPLWLLLAKLEEKDGQLVRARSILDRAR 746 (913)
T ss_pred HHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC-CCCchHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 6666665555541 1122344445555555555555555554443331 1123344444444445555555555555555
Q ss_pred HCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH--------------chh------------cCCCCCHHHHHHHHH
Q 047648 427 NNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFK--------------MEK------------EKKWPNIVTYNVLIK 480 (537)
Q Consensus 427 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------------~~~------------~~~~~~~~~~~~l~~ 480 (537)
-.+ |-+...|...|.+-.+.|..+.|..++.++++ +.+ ..+..|+.+.-.+..
T Consensus 747 lkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~ 825 (913)
T KOG0495|consen 747 LKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAK 825 (913)
T ss_pred hcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHH
Confidence 443 34445555555555555555555555444433 000 012346666777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHHHhcCCcCCc
Q 047648 481 GFCQKGKLEDANGLLNELLEKGLIPNQ-TTYQIVREEMMEKGFIPDI 526 (537)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~g~~~~a 526 (537)
.+....+++.|.+.|.+.++. .||. .+|.-+..-..+.|.-++-
T Consensus 826 lfw~e~k~~kar~Wf~Ravk~--d~d~GD~wa~fykfel~hG~eed~ 870 (913)
T KOG0495|consen 826 LFWSEKKIEKAREWFERAVKK--DPDNGDAWAWFYKFELRHGTEEDQ 870 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHcc--CCccchHHHHHHHHHHHhCCHHHH
Confidence 788888888888888888874 3554 5677777777777754443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-11 Score=111.88 Aligned_cols=436 Identities=11% Similarity=0.062 Sum_probs=302.2
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHH
Q 047648 40 DADPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIII 119 (537)
Q Consensus 40 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (537)
+++...|..+|+.++.. ...+..++...+..=.+++....|.-+++..+.. - |.-.-.|
T Consensus 86 q~e~~RARSv~ERALdv--d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~----------------l---PRVdqlW 144 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDV--DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI----------------L---PRVDQLW 144 (677)
T ss_pred HHHHHHHHHHHHHHHhc--ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh----------------c---chHHHHH
Confidence 34555566666666654 2344445555555555555555555544443322 1 3334556
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 047648 120 DMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKA 199 (537)
Q Consensus 120 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 199 (537)
...+-.=-..|+...|.++|++-.+ ..|+..+|++.+..-.+...++.|..+|+...-. .|++.+|-.....-.+.
T Consensus 145 yKY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~ 220 (677)
T KOG1915|consen 145 YKYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKH 220 (677)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhc
Confidence 6666666677999999999999887 5799999999999999999999999999998764 68999999888888899
Q ss_pred CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcC-CCCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHH
Q 047648 200 GKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKK-GGIGKMYKADAVFKDMVENGILPN--EVTFNTLIDGFCKDENIS 276 (537)
Q Consensus 200 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~ 276 (537)
|.+..|..+|+...+. -.|...-..++.+++.- .....++.|.-+|+-.++. ++.+ ...|......--+-|+..
T Consensus 221 g~~~~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~ 297 (677)
T KOG1915|consen 221 GNVALARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKE 297 (677)
T ss_pred CcHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchh
Confidence 9999999999988764 11333333344444320 0045677777788777765 3323 344444444444455544
Q ss_pred HHHHH--------HHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH--HHHHHHH--------HH
Q 047648 277 AAMKV--------FEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNV--VTSNALI--------NG 338 (537)
Q Consensus 277 ~a~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~ll--------~~ 338 (537)
...+. |+.+...+ +.|-.+|--.++.-...|+.+...++|++++.. ++|-. ..|...| -.
T Consensus 298 gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalye 375 (677)
T KOG1915|consen 298 GIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYE 375 (677)
T ss_pred hhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHH
Confidence 43332 34444443 446777877888888889999999999999876 34422 1121111 11
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH----HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 047648 339 FCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAY----CKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGN 414 (537)
Q Consensus 339 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 414 (537)
-....+.+.+.++++...+. ++....||..+--.| .++.+...|.+++...+ |..|...+|...|..-.+.++
T Consensus 376 Ele~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~e 452 (677)
T KOG1915|consen 376 ELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLRE 452 (677)
T ss_pred HHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhh
Confidence 13467899999999998884 444556666554444 36788999999988876 457788899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047648 415 VEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGL 494 (537)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 494 (537)
++.+..++++.++-+ |-+..+|......-...|+.+.|+.+|+-+++ ..........|...|..=...|.++.|..+
T Consensus 453 fDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~--qp~ldmpellwkaYIdFEi~~~E~ekaR~L 529 (677)
T KOG1915|consen 453 FDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAIS--QPALDMPELLWKAYIDFEIEEGEFEKARAL 529 (677)
T ss_pred HHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhc--CcccccHHHHHHHhhhhhhhcchHHHHHHH
Confidence 999999999999976 66788999888888899999999999999885 111222455677777777889999999999
Q ss_pred HHHHHHcCCCCCHHhHHHH
Q 047648 495 LNELLEKGLIPNQTTYQIV 513 (537)
Q Consensus 495 ~~~~~~~g~~p~~~~~~~l 513 (537)
++++++.. +-...|.+.
T Consensus 530 YerlL~rt--~h~kvWisF 546 (677)
T KOG1915|consen 530 YERLLDRT--QHVKVWISF 546 (677)
T ss_pred HHHHHHhc--ccchHHHhH
Confidence 99998843 333344443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3e-13 Score=129.56 Aligned_cols=80 Identities=18% Similarity=0.240 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047648 413 GNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDAN 492 (537)
Q Consensus 413 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 492 (537)
++.+++.+..+...+.. +.|+..+..+...+.+.|++++|.+.|+.+.+ ..|+...+..+..++.+.|+.++|.
T Consensus 308 ~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~-----~~P~~~~~~~La~~~~~~g~~~~A~ 381 (398)
T PRK10747 308 NNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK-----QRPDAYDYAWLADALDRLHKPEEAA 381 (398)
T ss_pred CChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 44444444444444432 23333344444444444444444444444433 1244444444444444444444444
Q ss_pred HHHHHH
Q 047648 493 GLLNEL 498 (537)
Q Consensus 493 ~~~~~~ 498 (537)
+++++.
T Consensus 382 ~~~~~~ 387 (398)
T PRK10747 382 AMRRDG 387 (398)
T ss_pred HHHHHH
Confidence 444444
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.1e-11 Score=112.04 Aligned_cols=370 Identities=12% Similarity=0.018 Sum_probs=229.6
Q ss_pred HHHHHHHHcCCchHHHHHHHHHhhCCCCCC--hhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047648 121 MLMLAYVKNMKPHLGFEAFKRAGDYGLKSS--VLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCK 198 (537)
Q Consensus 121 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 198 (537)
.=...+-..|..--+..+....+..|+.-. ..+|+.-...|.+.+.++-|..+|...++.- +-+...|......--.
T Consensus 484 ~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~ 562 (913)
T KOG0495|consen 484 KEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKS 562 (913)
T ss_pred HHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHh
Confidence 333444444555555555555555444322 2456666666777777777777776666552 2255556555555555
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 047648 199 AGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAA 278 (537)
Q Consensus 199 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 278 (537)
.|..+....+|++....- +.....|......+-. .|+...|..++.+..+.... +...|.+.+..-....+++.|
T Consensus 563 hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~---agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~era 637 (913)
T KOG0495|consen 563 HGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWK---AGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERA 637 (913)
T ss_pred cCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHh---cCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHH
Confidence 666666666666666542 2233444444444545 56666666666666655322 555666666666666667777
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 279 MKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQ 358 (537)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 358 (537)
..+|.+.... .|+...|..-+...--.++.++|++++++.++. ++.-...|..+...+-+.++++.|...|..-.+.
T Consensus 638 R~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~ 714 (913)
T KOG0495|consen 638 RDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK 714 (913)
T ss_pred HHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc
Confidence 7666666553 345555555555555566666666666666654 2223445566666666666666666666554443
Q ss_pred CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----------
Q 047648 359 GLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNN---------- 428 (537)
Q Consensus 359 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------- 428 (537)
++..+..|..+...--+.|++-.|..++++..-+++. +...|...++.-.+.|+.+.|..++.+.++.
T Consensus 715 -cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaE 792 (913)
T KOG0495|consen 715 -CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAE 792 (913)
T ss_pred -CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHH
Confidence 2224445555555555666666666666666666555 5666666666666666666666665555442
Q ss_pred -------------------CCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHH
Q 047648 429 -------------------GMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLE 489 (537)
Q Consensus 429 -------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 489 (537)
.+.-|+.+...+...|....++++|++.|+++++.+ +.+-.+|..+...+.++|.-+
T Consensus 793 aI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d----~d~GD~wa~fykfel~hG~ee 868 (913)
T KOG0495|consen 793 AIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD----PDNGDAWAWFYKFELRHGTEE 868 (913)
T ss_pred HHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC----CccchHHHHHHHHHHHhCCHH
Confidence 123455666777788888899999999999998643 346689999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCH
Q 047648 490 DANGLLNELLEKGLIPNQ 507 (537)
Q Consensus 490 ~A~~~~~~~~~~g~~p~~ 507 (537)
+-.++++.+.. ..|..
T Consensus 869 d~kev~~~c~~--~EP~h 884 (913)
T KOG0495|consen 869 DQKEVLKKCET--AEPTH 884 (913)
T ss_pred HHHHHHHHHhc--cCCCC
Confidence 99999999987 34554
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-13 Score=123.22 Aligned_cols=393 Identities=13% Similarity=0.101 Sum_probs=246.9
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhH-HHHHHHHHhCCChhHHHHHHHHHHhCCCCC----CHHHHHHHHH
Q 047648 120 DMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSC-NQLLRALVKEGKFEDVEYVYKEMKRRRIEL----NLDSFNFVLN 194 (537)
Q Consensus 120 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~ 194 (537)
..|...|..+....+|+..|+-+++...-|+.-.. -.+...+.+.+.+.+|++.|+..+..-+.. .....+.+..
T Consensus 205 ~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigv 284 (840)
T KOG2003|consen 205 FNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGV 284 (840)
T ss_pred HHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCe
Confidence 34666777777788888888877776655554432 223455667777777887777666542211 2234455555
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhh-HHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCC------------HHH
Q 047648 195 GLCKAGKLNKASDIMEDMKSLGVSPKVVT-YNILIDGYCKKGGIGKMYKADAVFKDMVENGILPN------------EVT 261 (537)
Q Consensus 195 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~------------~~~ 261 (537)
.+.+.|.++.|+.-|+...+. .|+..+ +|..+-.+ - .|+.++..+.|.+|......|| ...
T Consensus 285 tfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f-~---i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l 358 (840)
T KOG2003|consen 285 TFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAF-A---IGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL 358 (840)
T ss_pred eEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhhe-e---cCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence 677778888888877776665 355544 44444333 3 4777777777777765322222 221
Q ss_pred HHHHH-----HHHhccC--CHHHHHHHHHHHHhCCCCCChhh-------------H--------HHHHHHHHhCCCHHHH
Q 047648 262 FNTLI-----DGFCKDE--NISAAMKVFEEMGSHGIAAGVVT-------------Y--------NSLINGLCVDGKLDEA 313 (537)
Q Consensus 262 ~~~l~-----~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~-------------~--------~~l~~~~~~~~~~~~A 313 (537)
.+..+ .-.-+.+ +-++++-.--+++.--+.|+-.. + -.-...+.++|+++.|
T Consensus 359 l~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~a 438 (840)
T KOG2003|consen 359 LNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGA 438 (840)
T ss_pred HHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHH
Confidence 11111 1111111 11111111111111111111000 0 0012345667777777
Q ss_pred HHHHHHHHHcCCCC------------------------------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 314 VALRDEMMASGLKP------------------------------------NVVTSNALINGFCKKKLVEKARVLFDDISE 357 (537)
Q Consensus 314 ~~~~~~~~~~~~~~------------------------------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 357 (537)
+++++-+.+..-+. +......-.+....+|++++|.+.+.+...
T Consensus 439 ieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ 518 (840)
T KOG2003|consen 439 IEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALN 518 (840)
T ss_pred HHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHc
Confidence 77666655432111 111111111112236899999999999887
Q ss_pred cCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHH
Q 047648 358 QGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTY 437 (537)
Q Consensus 358 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 437 (537)
.+..-....|| +.-.+-..|+.++|++.|-++... +..+..++..+...|....+..+|++++.+.... ++.|+.++
T Consensus 519 ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~il 595 (840)
T KOG2003|consen 519 NDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAIL 595 (840)
T ss_pred CchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHH
Confidence 63332222333 344567889999999999887654 2237888889999999999999999999887765 67889999
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 047648 438 NILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEM 517 (537)
Q Consensus 438 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 517 (537)
..|.+.|-+.|+-.+|.+.+-+.. .-++.|..+...|...|....-++.++..|++..- +.|+..-|..++..|
T Consensus 596 skl~dlydqegdksqafq~~ydsy----ryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc 669 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSY----RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASC 669 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhcc----cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHH
Confidence 999999999999999999876654 34566899999999999999999999999999876 889999999887655
Q ss_pred -HhcCCcCCcc
Q 047648 518 -MEKGFIPDIE 527 (537)
Q Consensus 518 -~~~g~~~~a~ 527 (537)
.+.|++..|.
T Consensus 670 ~rrsgnyqka~ 680 (840)
T KOG2003|consen 670 FRRSGNYQKAF 680 (840)
T ss_pred HHhcccHHHHH
Confidence 5678876663
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.1e-12 Score=115.34 Aligned_cols=359 Identities=11% Similarity=0.002 Sum_probs=247.6
Q ss_pred CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhH--
Q 047648 147 LKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTY-- 224 (537)
Q Consensus 147 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-- 224 (537)
...|...+-.....+.+.|....|...|...... -+..|.+-+....-.-+.+. ...+... ...|...+
T Consensus 160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~----~~~l~~~-l~~~~h~M~~ 230 (559)
T KOG1155|consen 160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEI----LSILVVG-LPSDMHWMKK 230 (559)
T ss_pred ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHH----HHHHHhc-CcccchHHHH
Confidence 3445555555556666777777788777776654 12223322222211222222 2222211 12121111
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC--CCChhhHHHHHH
Q 047648 225 NILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGI--AAGVVTYNSLIN 302 (537)
Q Consensus 225 ~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~ 302 (537)
-.+..++-. ..+.+++.+-...+...|++-+...-+....+.....++++|+.+|+++.+... --|..+|+.++-
T Consensus 231 ~F~~~a~~e---l~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY 307 (559)
T KOG1155|consen 231 FFLKKAYQE---LHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY 307 (559)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH
Confidence 123344444 557777887778888877775555555556666678899999999999988631 125667776653
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHH
Q 047648 303 GLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMED 382 (537)
Q Consensus 303 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 382 (537)
. ++.+-.- ..+.+-.-.--+-.+.|...+.+.|+-.++.++|...|++..+.++. ....|+.+..-|...++...
T Consensus 308 v--~~~~skL--s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~A 382 (559)
T KOG1155|consen 308 V--KNDKSKL--SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHA 382 (559)
T ss_pred H--HhhhHHH--HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHH
Confidence 3 3332222 22222111111334567788888999999999999999999988655 66789999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 383 AFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 383 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
|.+-+++.++.++. |...|-.+.++|.-.+...=|+-+|++..... |.|...|.+|.++|.+.++.++|++.|..++.
T Consensus 383 Ai~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 383 AIESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred HHHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 99999999998766 99999999999999999999999999999874 67889999999999999999999999999986
Q ss_pred chhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCH--HhHHHHHHHHHhcCCcCCccC
Q 047648 463 MEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEK----GLIPNQ--TTYQIVREEMMEKGFIPDIEG 528 (537)
Q Consensus 463 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p~~--~~~~~l~~~~~~~g~~~~a~~ 528 (537)
.+ ..+...+..|...|-+.++.++|...+++.++. |...+. ....-+..-+.+.+++++|.-
T Consensus 461 ~~----dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~ 528 (559)
T KOG1155|consen 461 LG----DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASY 528 (559)
T ss_pred cc----ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHH
Confidence 33 235688999999999999999999999888762 333222 222234566677777777654
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.2e-16 Score=141.14 Aligned_cols=253 Identities=18% Similarity=0.192 Sum_probs=74.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHH
Q 047648 237 IGKMYKADAVFKDMVENGILP-NEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVA 315 (537)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 315 (537)
.|++++|++++++......+| |...|..+...+...++++.|...++++...+.. +...+..++.. ...+++++|.+
T Consensus 21 ~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~ 98 (280)
T PF13429_consen 21 RGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALK 98 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccccccccc
Confidence 455555555554433222112 2233333334444455556666666555544322 33344444444 45556666665
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 047648 316 LRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQG-LSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRG 394 (537)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 394 (537)
++....+. .+++..+...+..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|++.+++.++..
T Consensus 99 ~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~ 176 (280)
T PF13429_consen 99 LAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD 176 (280)
T ss_dssp ---------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-
T ss_pred cccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 55554433 2344445555555556666666666665554321 23345555555666666666666666666666554
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHH
Q 047648 395 VLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVT 474 (537)
Q Consensus 395 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 474 (537)
+. |......++..+...|+.+++..++....+.. +.++..+..+..+|...|++++|+..|++..+.. +.|+..
T Consensus 177 P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~----p~d~~~ 250 (280)
T PF13429_consen 177 PD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN----PDDPLW 250 (280)
T ss_dssp TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS----TT-HHH
T ss_pred CC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc----cccccc
Confidence 33 45555556666666666666666665555542 3444555566666666666666666666655421 335555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 047648 475 YNVLIKGFCQKGKLEDANGLLNELL 499 (537)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~~~ 499 (537)
...+..++...|+.++|.++.++..
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccc
Confidence 5566666666666666666655543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1e-10 Score=105.72 Aligned_cols=386 Identities=10% Similarity=0.022 Sum_probs=269.8
Q ss_pred CchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHH--H
Q 047648 113 CRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSF--N 190 (537)
Q Consensus 113 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~ 190 (537)
..++..+......+.+.|..+.|.+.|...+.. .|-.=.+|..|...+ .+.+.+. .+.. +.+.|..-+ -
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~li---t~~e~~~----~l~~-~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELI---TDIEILS----ILVV-GLPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhh---chHHHHH----HHHh-cCcccchHHHHH
Confidence 345566666667788889999999999998864 233334444444332 2222222 2221 112111111 1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHH
Q 047648 191 FVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGIL--PNEVTFNTLIDG 268 (537)
Q Consensus 191 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~ 268 (537)
.+..++-.....+++.+-.+.....|++-+...-+....+... ..++++|+.+|+++.++..- -|..+|..++-.
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~---~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv 308 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYN---QRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhh---hhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH
Confidence 2344566666788888888888888765444443433344444 78999999999999987421 256777776543
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047648 269 FCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKA 348 (537)
Q Consensus 269 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 348 (537)
- ..+- .+..+.+-...--.--+.|...+.+-|.-.++.++|...|++.++.+ +.....|+.+.+-|....+...|
T Consensus 309 ~--~~~s--kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AA 383 (559)
T KOG1155|consen 309 K--NDKS--KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAA 383 (559)
T ss_pred H--hhhH--HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHH
Confidence 3 2221 11222111111012234567778888889999999999999999865 34567888899999999999999
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047648 349 RVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNN 428 (537)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 428 (537)
..-++...+.++. |...|-.|.++|.-.+.+.-|+-.|++.....+. |...|.+|..+|.+.++.++|++.|.+....
T Consensus 384 i~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 384 IESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred HHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 9999999987655 8889999999999999999999999999987655 8999999999999999999999999999987
Q ss_pred CCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHch-hcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 047648 429 GMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKME-KEK-KWP-NIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIP 505 (537)
Q Consensus 429 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 505 (537)
| ..+...+..|.+.|-+.++.++|...|++.++.. ..| ..| ....-.-|..-+.+.+++++|.........- .+
T Consensus 462 ~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~ 538 (559)
T KOG1155|consen 462 G-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ET 538 (559)
T ss_pred c-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--Cc
Confidence 6 4567889999999999999999999999887622 122 222 2233334566788899999999888777763 56
Q ss_pred CHHhHHHHHHHHHhc
Q 047648 506 NQTTYQIVREEMMEK 520 (537)
Q Consensus 506 ~~~~~~~l~~~~~~~ 520 (537)
.-.--..+++.+.+.
T Consensus 539 e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 539 ECEEAKALLREIRKI 553 (559)
T ss_pred hHHHHHHHHHHHHHh
Confidence 666677777766554
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-12 Score=125.36 Aligned_cols=285 Identities=11% Similarity=0.051 Sum_probs=220.4
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHH--HHHHHHhcCCCCCCH
Q 047648 164 EGKFEDVEYVYKEMKRRRIELNLDSF-NFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYN--ILIDGYCKKGGIGKM 240 (537)
Q Consensus 164 ~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~~ 240 (537)
.|+++.|.+......+.. +++..+ ........+.|+++.|.+.+.++.+. .|+...+. .....+.. .|++
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~---~g~~ 169 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLA---RNEN 169 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHH---CCCH
Confidence 699999998888766542 123333 33345558899999999999999875 45554333 33556777 8999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHhCCCHHHH
Q 047648 241 YKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGV-------VTYNSLINGLCVDGKLDEA 313 (537)
Q Consensus 241 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A 313 (537)
++|...++++.+.... +......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+..
T Consensus 170 ~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l 248 (398)
T PRK10747 170 HAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGL 248 (398)
T ss_pred HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999887533 6788889999999999999999999999987654322 1233344444455556667
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047648 314 VALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDR 393 (537)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 393 (537)
.++++.+.+. .+.++.....+...+...|+.++|..++++..+. .|+.... ++.+....++.+++++..+...+.
T Consensus 249 ~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~ 323 (398)
T PRK10747 249 KRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ 323 (398)
T ss_pred HHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh
Confidence 7777766543 3557888889999999999999999999998875 3344222 334445669999999999999988
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHch
Q 047648 394 GVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKME 464 (537)
Q Consensus 394 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 464 (537)
.+. |+..+..+.+.|.+.+++++|.+.|+.+.+. .|+...+..+..++.+.|+.++|.+++++.+.+.
T Consensus 324 ~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 324 HGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 665 7888999999999999999999999999986 5899999999999999999999999999887644
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.1e-16 Score=140.46 Aligned_cols=261 Identities=13% Similarity=0.105 Sum_probs=81.7
Q ss_pred HHHHHHHHcCCchHHHHHHHHHhhCC-CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 047648 121 MLMLAYVKNMKPHLGFEAFKRAGDYG-LKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKA 199 (537)
Q Consensus 121 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 199 (537)
.+...+.+.|++++|++++.+..... .+.+...|..+.......++++.|...|+++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 34666777777777777775543332 2334445555555666667777777777777665433 45556666655 567
Q ss_pred CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHH
Q 047648 200 GKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENG-ILPNEVTFNTLIDGFCKDENISAA 278 (537)
Q Consensus 200 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a 278 (537)
+++++|.++++...+. .++...+..++..+.. .++++++.++++.+.... .+++...|..+...+.+.|+.++|
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A 165 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYR---LGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKA 165 (280)
T ss_dssp -----------------------------H-HHH---TT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHH---HhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 7777777777665544 2445555666666666 667777777776665432 234555666666666677777777
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 279 MKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQ 358 (537)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 358 (537)
++.+++..+.. +.|......++..+...|+.+++.+++....+.. +.|+..+..+..++...|+.++|...|++..+.
T Consensus 166 ~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~ 243 (280)
T PF13429_consen 166 LRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL 243 (280)
T ss_dssp HHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc
Confidence 77777766642 2245556666666666676666666666665543 344455566666666666666666666666654
Q ss_pred CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047648 359 GLSPSVITYNTLIDAYCKEGRMEDAFAMRNSML 391 (537)
Q Consensus 359 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 391 (537)
.+. |+.....+..++.+.|+.++|.++.+++.
T Consensus 244 ~p~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 244 NPD-DPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp STT--HHHHHHHHHHHT----------------
T ss_pred ccc-ccccccccccccccccccccccccccccc
Confidence 332 56666666666666666666666665543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-12 Score=126.15 Aligned_cols=133 Identities=14% Similarity=0.081 Sum_probs=59.7
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh--HHHHH
Q 047648 363 SVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTY-NCLIAGLSREGNVEGVRNIMNELVNNGMRAGL--VTYNI 439 (537)
Q Consensus 363 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ 439 (537)
+...+..++..+...|++++|.+++++..+..+......+ ..........++.+.+.+.+++..+.. +.|+ ....+
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p~~~~~~ll~s 340 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-DDKPKCCINRA 340 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-CCChhHHHHHH
Confidence 4444444555555555555555555555543222111000 111111122344455555555544432 2233 34445
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047648 440 LVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELL 499 (537)
Q Consensus 440 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 499 (537)
+...+.+.|++++|.+.|+.+.. ....|+...+..+...+.+.|+.++|.+++++.+
T Consensus 341 Lg~l~~~~~~~~~A~~~le~a~a---~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 341 LGQLLMKHGEFIEAADAFKNVAA---CKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHcccHHHHHHHHHHhHH---hhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 55555555555555555553111 0113455555555555555555555555555543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.9e-13 Score=127.06 Aligned_cols=294 Identities=11% Similarity=0.032 Sum_probs=133.5
Q ss_pred HcCCchHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 047648 128 KNMKPHLGFEAFKRAGDYGLKSS-VLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKAS 206 (537)
Q Consensus 128 ~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 206 (537)
..|+++.|.+.+.+..+.. |+ ...+-....+..+.|+++.|.+.+....+....++..........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 3566666666666655532 22 22233334455556666666666666554422222222333355555666666666
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHH---hccCCHHHHHHHH
Q 047648 207 DIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFN-TLIDGF---CKDENISAAMKVF 282 (537)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~-~l~~~~---~~~g~~~~a~~~~ 282 (537)
..++.+.+..+ -+...+..+...+.. .|++++|.+.+..+.+.++. +...+. ....++ ...+..++..+.+
T Consensus 174 ~~l~~l~~~~P-~~~~~l~ll~~~~~~---~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 174 HGVDKLLEMAP-RHKEVLKLAEEAYIR---SGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 66666665532 134455555556655 56666666666666655433 222121 111111 1111111112222
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 047648 283 EEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSP 362 (537)
Q Consensus 283 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 362 (537)
..+.+.. | +. .+.+...+..+...+...|+.++|.+++++..+..+..
T Consensus 249 ~~~~~~~--p-----------------------------~~-~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~ 296 (409)
T TIGR00540 249 LNWWKNQ--P-----------------------------RH-RRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDD 296 (409)
T ss_pred HHHHHHC--C-----------------------------HH-HhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc
Confidence 2222211 0 00 01133444444444444444555544444444432221
Q ss_pred CHhHH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHH
Q 047648 363 SVITY-NTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDV--STYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNI 439 (537)
Q Consensus 363 ~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 439 (537)
....+ ..........++.+.+.+.++...+..+. |+ ....++...+.+.|++++|.+.|+........|+...+..
T Consensus 297 ~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~ 375 (409)
T TIGR00540 297 RAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAM 375 (409)
T ss_pred ccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHH
Confidence 11000 11111112234445555555555544322 33 4455556666666666666666663222223455555556
Q ss_pred HHHHHHhcCChHHHHHHHHHHH
Q 047648 440 LVGALCKDGKSKKAVSLLDEMF 461 (537)
Q Consensus 440 l~~~~~~~g~~~~A~~~~~~~~ 461 (537)
+...+.+.|+.++|.+++++..
T Consensus 376 La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 376 AADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666666666666666543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.6e-12 Score=113.58 Aligned_cols=370 Identities=11% Similarity=0.003 Sum_probs=247.2
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHhhCCCCCC-hhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047648 119 IDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSS-VLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLC 197 (537)
Q Consensus 119 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 197 (537)
+-...+-|.++|++++|++.|.+.++. .|+ +..|.....+|...|+|+++.+.-...++.++. -+..+..-..++-
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAHE 194 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHH
Confidence 345677889999999999999999985 566 777888888999999999999888887776322 2335555555666
Q ss_pred hcCChhHHHHH----------------------HHHH--------Hh-CC--CCCChhhHHHHHHHHhcCCC-----C--
Q 047648 198 KAGKLNKASDI----------------------MEDM--------KS-LG--VSPKVVTYNILIDGYCKKGG-----I-- 237 (537)
Q Consensus 198 ~~g~~~~a~~~----------------------~~~~--------~~-~~--~~~~~~~~~~ll~~~~~~~~-----~-- 237 (537)
..|++++|+.= +... .+ .+ +-|+.....+....+..... .
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 66666655421 1111 11 11 22444444444443322100 0
Q ss_pred -C-----------------CHHHHHHHHHHHHHC-CCCC--C---------HHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 047648 238 -G-----------------KMYKADAVFKDMVEN-GILP--N---------EVTFNTLIDGFCKDENISAAMKVFEEMGS 287 (537)
Q Consensus 238 -~-----------------~~~~a~~~~~~~~~~-~~~p--~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 287 (537)
+ .+.+|...+.+-... ...+ + ..+.......+.-.|+...|...|+..++
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 0 111111111111000 0001 1 11112222234456888888888988887
Q ss_pred CCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHH
Q 047648 288 HGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITY 367 (537)
Q Consensus 288 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 367 (537)
.... +...|-.+..+|.+..+.++-...|.+..+.+ +.++.+|..-.....-.+++++|..-|++.....+. +...|
T Consensus 355 l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~ 431 (606)
T KOG0547|consen 355 LDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAY 431 (606)
T ss_pred cCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHH
Confidence 6433 22337777778889999999999999988865 456677877777777888899999999998886544 56677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-------CChHHHHHH
Q 047648 368 NTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMR-------AGLVTYNIL 440 (537)
Q Consensus 368 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~l 440 (537)
..+.-+..+.++++++...|++..++- +..+..|+.....+...++++.|.+.|+..++.... +.+.+...+
T Consensus 432 iQl~~a~Yr~~k~~~~m~~Fee~kkkF-P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~ 510 (606)
T KOG0547|consen 432 IQLCCALYRQHKIAESMKTFEEAKKKF-PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKAL 510 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhH
Confidence 777777778889999999999998873 336788999999999999999999999988875311 112222222
Q ss_pred HHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 441 VGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 441 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
+..- -.+++..|..++.++++++ +.....|.+|...-.+.|+.++|+++|++...
T Consensus 511 l~~q-wk~d~~~a~~Ll~KA~e~D----pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 511 LVLQ-WKEDINQAENLLRKAIELD----PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hhhc-hhhhHHHHHHHHHHHHccC----chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2222 3388999999999998754 33567888999999999999999999998765
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.6e-14 Score=131.04 Aligned_cols=201 Identities=11% Similarity=0.004 Sum_probs=100.7
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 047648 293 GVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLID 372 (537)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 372 (537)
.+.+|-++.++|.-+++.+.|++.|++.++.+ +....+|+.+..-+.....+|.|...|+......+. +...|..+..
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-hYnAwYGlG~ 497 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-HYNAWYGLGT 497 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-hhHHHHhhhh
Confidence 44555555555555555555555555555432 113445555555555555555555555555443211 2222333444
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHH
Q 047648 373 AYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKK 452 (537)
Q Consensus 373 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 452 (537)
.|.+.++++.|+-.|+++++.++. +.+....++..+.+.|+.++|+++++++...+ +.|+..--.-+..+...+++++
T Consensus 498 vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~~~~e 575 (638)
T KOG1126|consen 498 VYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSLGRYVE 575 (638)
T ss_pred heeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcchHH
Confidence 555555555555555555555444 44445555555555555555555555555543 2233333333444455555555
Q ss_pred HHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 453 AVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEK 501 (537)
Q Consensus 453 A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (537)
|+..+++..+. ++.+..++..+...|.+.|+.+.|+.-|--+.+.
T Consensus 576 al~~LEeLk~~----vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 576 ALQELEELKEL----VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHHHHh----CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 55555555331 2334445555555555555555555555555553
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.7e-11 Score=111.30 Aligned_cols=428 Identities=11% Similarity=0.023 Sum_probs=292.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHH
Q 047648 58 RASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFE 137 (537)
Q Consensus 58 ~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 137 (537)
+...++..--.+.+++.-.|++.+|..++..+.-. ..+.........++.+..++++|+.
T Consensus 44 ~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--------------------~~d~~cryL~~~~l~~lk~~~~al~ 103 (611)
T KOG1173|consen 44 GLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLE--------------------KRDIACRYLAAKCLVKLKEWDQALL 103 (611)
T ss_pred hccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--------------------hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666677888888899999988888765321 2334555566777888888888888
Q ss_pred HHHH----HhhCC---------CCCCh-----------hhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047648 138 AFKR----AGDYG---------LKSSV-----------LSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVL 193 (537)
Q Consensus 138 ~~~~----~~~~~---------~~~~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 193 (537)
++.+ +.... +.+|. ..+-.-...|....++++|...|.+.....+. ....+..++
T Consensus 104 vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~-c~Ea~~~lv 182 (611)
T KOG1173|consen 104 VLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAK-CFEAFEKLV 182 (611)
T ss_pred HhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchh-hHHHHHHHH
Confidence 7772 21110 01111 11111123444455677788787776655322 222222222
Q ss_pred HHHHhc------------------CChhHHHHHHHHH----Hh------------CCCCCChhhHHHHHHHHhcCCCCCC
Q 047648 194 NGLCKA------------------GKLNKASDIMEDM----KS------------LGVSPKVVTYNILIDGYCKKGGIGK 239 (537)
Q Consensus 194 ~~~~~~------------------g~~~~a~~~~~~~----~~------------~~~~~~~~~~~~ll~~~~~~~~~~~ 239 (537)
....-. .+.+....+|+-. .. .+..-+.........-+.. ..+
T Consensus 183 s~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~---~c~ 259 (611)
T KOG1173|consen 183 SAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYY---GCR 259 (611)
T ss_pred HHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHH---cCh
Confidence 221100 0111111222211 00 0111223333333444445 678
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHH
Q 047648 240 MYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDE 319 (537)
Q Consensus 240 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 319 (537)
+.+..++.....+.. ++....+..-|.++...|+..+-..+=.++.+. .|-.+.+|-++.--|...|+.++|.+.|.+
T Consensus 260 f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SK 337 (611)
T KOG1173|consen 260 FKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSK 337 (611)
T ss_pred HHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHH
Confidence 888889998888763 456667777777888888888777777777765 355788899998888888999999999998
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 047648 320 MMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDV 399 (537)
Q Consensus 320 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 399 (537)
...-+ +.-...|..+...|+-.|..++|+..+....+.-.. ....+--+.--|.+.++.+.|.+.|.+.....+. |+
T Consensus 338 at~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~-Dp 414 (611)
T KOG1173|consen 338 ATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPS-DP 414 (611)
T ss_pred HhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCC-cc
Confidence 87643 223467889999999999999999999887664111 1122223455678899999999999999987544 88
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C--CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHH
Q 047648 400 STYNCLIAGLSREGNVEGVRNIMNELVNN----G--MRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIV 473 (537)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 473 (537)
..++-+.-.....+.+.+|..+|+..+.. + .+.-..+++.|+.+|.+.+.+++|+..+++++.+. +.|..
T Consensus 415 lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~----~k~~~ 490 (611)
T KOG1173|consen 415 LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS----PKDAS 490 (611)
T ss_pred hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC----CCchh
Confidence 88888888888899999999999988732 1 11234678999999999999999999999998754 56889
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhc
Q 047648 474 TYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMMEK 520 (537)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 520 (537)
++.++.-.|...|+++.|++.|.+.+. +.||..+...++..+.+.
T Consensus 491 ~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 491 THASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHHh
Confidence 999999999999999999999999987 889998888888766554
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.5e-13 Score=127.96 Aligned_cols=287 Identities=10% Similarity=0.058 Sum_probs=230.8
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCChhhHHHHHHHHhcCCCCCCHHHH
Q 047648 166 KFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGV--SPKVVTYNILIDGYCKKGGIGKMYKA 243 (537)
Q Consensus 166 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~~~~a 243 (537)
+..+|...|..+... +.-+..+...+.++|...+++++|.++|+.+.+... .-+...|.+.+-.+-+ .+ +
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~-----~v--~ 405 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD-----EV--A 405 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh-----hH--H
Confidence 467889999986655 333557778899999999999999999999987531 1366788887766533 22 2
Q ss_pred HHHH-HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 047648 244 DAVF-KDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAA-GVVTYNSLINGLCVDGKLDEAVALRDEMM 321 (537)
Q Consensus 244 ~~~~-~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 321 (537)
+..+ +.+... -+-.+.+|.++..+|.-.++.+.|++.|++..+.+ | ...+|+.+..-+....++|.|...|+..+
T Consensus 406 Ls~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld--p~faYayTLlGhE~~~~ee~d~a~~~fr~Al 482 (638)
T KOG1126|consen 406 LSYLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD--PRFAYAYTLLGHESIATEEFDKAMKSFRKAL 482 (638)
T ss_pred HHHHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC--CccchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence 2222 233332 23367899999999999999999999999999863 4 78899999999999999999999999988
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 047648 322 ASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVST 401 (537)
Q Consensus 322 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 401 (537)
... +.+-..|-.+...|.+.++++.|+-.|++..+.++. +.+....+...+.+.|+.++|+.+++++....++ |+..
T Consensus 483 ~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~ 559 (638)
T KOG1126|consen 483 GVD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLC 559 (638)
T ss_pred cCC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cchh
Confidence 632 223345556678899999999999999999987665 7777888899999999999999999999988766 6666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcC
Q 047648 402 YNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEK 467 (537)
Q Consensus 402 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 467 (537)
-...+..+...++.++|...++++++. ++.+..++..++..|-+.|+.+.|+.-|--+.++++.|
T Consensus 560 ~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 560 KYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 666777788899999999999999986 35567888999999999999999999999998876554
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.6e-11 Score=107.75 Aligned_cols=252 Identities=15% Similarity=0.100 Sum_probs=107.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHH
Q 047648 237 IGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVAL 316 (537)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 316 (537)
.|+.+.+-.++.+.-+..-.++...+-+........|+++.|..-.+++...+. -++.......++|.+.|++.....+
T Consensus 131 rgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~ 209 (400)
T COG3071 131 RGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAI 209 (400)
T ss_pred cccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHH
Confidence 344444444444433321122233333333334444444444444444333321 1233333444444444444444444
Q ss_pred HHHHHHcCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 047648 317 RDEMMASGLKPN-------VVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNS 389 (537)
Q Consensus 317 ~~~~~~~~~~~~-------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 389 (537)
+..+.+.+.-.+ ..+|..+++-....+..+.-...++..... .+.++..-..++.-+.+.|+.++|.++..+
T Consensus 210 l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~ 288 (400)
T COG3071 210 LPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIED 288 (400)
T ss_pred HHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHH
Confidence 444444433222 123344444444444444433344333222 222334444444555555555555555555
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCC
Q 047648 390 MLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKW 469 (537)
Q Consensus 390 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 469 (537)
..+++..|. -...-.+.+.++.+.-++..++-.+.. +.++..+..|...|.+.+.+.+|.+.|+.+++ ..
T Consensus 289 ~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~-----~~ 358 (400)
T COG3071 289 ALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALK-----LR 358 (400)
T ss_pred HHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh-----cC
Confidence 555444333 111112334444444444444444331 23334555555555555555555555554442 23
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 470 PNIVTYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 470 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
|+..+|+.+..++.+.|++.+|.++.++.+.
T Consensus 359 ~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 359 PSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred CChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5555555555555555555555555555443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-10 Score=103.56 Aligned_cols=296 Identities=11% Similarity=0.108 Sum_probs=235.7
Q ss_pred HHHHHHh--CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcC
Q 047648 157 LLRALVK--EGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKK 234 (537)
Q Consensus 157 l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 234 (537)
+..++.+ .|+|..|.+...+-.+.+-. ....|..-+.+.-+.|+.+.+-.++.+..+....++...+-+.......
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~- 165 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN- 165 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh-
Confidence 3444433 69999999999998777644 3445666677788899999999999999987445666677777777777
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHhC
Q 047648 235 GGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGV-------VTYNSLINGLCVD 307 (537)
Q Consensus 235 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~ 307 (537)
.|+...|..-+.++.+.+.. +.........+|.+.|++.....+...+.+.+.-.+. .+|..+++-....
T Consensus 166 --~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~ 242 (400)
T COG3071 166 --RRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDD 242 (400)
T ss_pred --CCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcc
Confidence 89999999999999887544 6778888899999999999999999999998866554 3567777766666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHH
Q 047648 308 GKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMR 387 (537)
Q Consensus 308 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 387 (537)
+..+.-...++..... .+.++..-..++.-+..+|+.++|.++..+..+++..|+ ... .-.+.+-++.+.-.+..
T Consensus 243 ~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~-~~~~l~~~d~~~l~k~~ 317 (400)
T COG3071 243 NGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCR-LIPRLRPGDPEPLIKAA 317 (400)
T ss_pred ccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHH-HHhhcCCCCchHHHHHH
Confidence 6666656666665544 356677888899999999999999999999998877665 222 22355778888878877
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchh
Q 047648 388 NSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEK 465 (537)
Q Consensus 388 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 465 (537)
+.-.+..+. ++..+.+|...|.+.+.+.+|...|+...+. .|+..+|+.+.+++.+.|++.+|.++.++...+..
T Consensus 318 e~~l~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~ 392 (400)
T COG3071 318 EKWLKQHPE-DPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTR 392 (400)
T ss_pred HHHHHhCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Confidence 777766444 6688999999999999999999999988875 69999999999999999999999999999875443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.1e-11 Score=105.06 Aligned_cols=287 Identities=14% Similarity=0.160 Sum_probs=174.0
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHhcc
Q 047648 199 AGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNE------VTFNTLIDGFCKD 272 (537)
Q Consensus 199 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~ 272 (537)
.++.++|.++|-+|.+.. +-+..+..+|.+.|-+ .|..+.|+.+.+.+.++ ||. .....|..-|...
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRs---RGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~a 120 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRS---RGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAA 120 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHh---cchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHh
Confidence 345566666666665532 1123333444455544 56666666666655543 221 2234455566677
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHH
Q 047648 273 ENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNV----VTSNALINGFCKKKLVEKA 348 (537)
Q Consensus 273 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a 348 (537)
|-+|.|+++|..+.+.+. --......|+..|-...+|++|+++-+++.+.+-.+.. ..|..+...+....+++.|
T Consensus 121 Gl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A 199 (389)
T COG2956 121 GLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRA 199 (389)
T ss_pred hhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHH
Confidence 777777777777766432 23445666777777777777777777777765533332 3455555555666777777
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047648 349 RVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNN 428 (537)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 428 (537)
..++.+..+.+.+ .+..-..+.+.+...|+++.|.+.++.+.+.++.--+.+...|..+|...|+.++....+.++.+.
T Consensus 200 ~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 200 RELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 7777777766433 444445566777777888888888888777765555667777777888888888888877777775
Q ss_pred CCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHc
Q 047648 429 GMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQ---KGKLEDANGLLNELLEK 501 (537)
Q Consensus 429 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~ 501 (537)
. ++...-..+.+.-....-.+.|...+.+-+. ..|+...+..++..-.. .|++.+-+..++.|+..
T Consensus 279 ~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~-----r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 279 N--TGADAELMLADLIELQEGIDAAQAYLTRQLR-----RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred c--CCccHHHHHHHHHHHhhChHHHHHHHHHHHh-----hCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 3 3334444444444444445555555544432 15777777777766543 34566666777777653
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.3e-10 Score=100.54 Aligned_cols=437 Identities=10% Similarity=0.037 Sum_probs=310.7
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHH-HCCCCCChHHHHHHhhhccCCCCchHHHHHHH
Q 047648 44 VLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFV-KNGKFTSVSTIFHALSTCSDSLCRNSIIIDML 122 (537)
Q Consensus 44 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 122 (537)
.+=+++-+.-+++....|...++...+..+ .+.++.+-=+-.|- ..|+...++++|++..+- .|+.-.|.+.
T Consensus 108 tLWlkYae~Emknk~vNhARNv~dRAvt~l---PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w----~P~eqaW~sf 180 (677)
T KOG1915|consen 108 TLWLKYAEFEMKNKQVNHARNVWDRAVTIL---PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW----EPDEQAWLSF 180 (677)
T ss_pred hHHHHHHHHHHhhhhHhHHHHHHHHHHHhc---chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC----CCcHHHHHHH
Confidence 334566666677766667666666555554 33344332222221 237789999999998874 6788999999
Q ss_pred HHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcC
Q 047648 123 MLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRR-RI-ELNLDSFNFVLNGLCKAG 200 (537)
Q Consensus 123 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g 200 (537)
|+.=.+....+.|..+|++.+-. -|++..|....+.-.+.|....+..+|+...+. |- ..+...|++....-.++.
T Consensus 181 I~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qk 258 (677)
T KOG1915|consen 181 IKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQK 258 (677)
T ss_pred HHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999874 589999999999999999999999999987764 10 112234455555555678
Q ss_pred ChhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHhcCCCCCCHHHHHH-----HHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 047648 201 KLNKASDIMEDMKSLGVSPK-VVTYNILIDGYCKKGGIGKMYKADA-----VFKDMVENGILPNEVTFNTLIDGFCKDEN 274 (537)
Q Consensus 201 ~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~~~a~~-----~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 274 (537)
.++.|.-+|.-.+..-++-. ...|..+...=-+.|+...+++++- -++.++..+ +-|-.+|-..++.-...|+
T Consensus 259 E~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~ 337 (677)
T KOG1915|consen 259 EYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGD 337 (677)
T ss_pred HHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCC
Confidence 88999999988877522211 2344444433333222334444432 233444443 3377788888888888899
Q ss_pred HHHHHHHHHHHHhCCCCCChh--hHHH----HHH----HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH----HHHH
Q 047648 275 ISAAMKVFEEMGSHGIAAGVV--TYNS----LIN----GLCVDGKLDEAVALRDEMMASGLKPNVVTSNALI----NGFC 340 (537)
Q Consensus 275 ~~~a~~~~~~~~~~~~~~~~~--~~~~----l~~----~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll----~~~~ 340 (537)
.+...++|+..+.. ++|-.. .|.- .|+ .-....+.+.+.++++..++. ++....||.-+= ..-.
T Consensus 338 ~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feI 415 (677)
T KOG1915|consen 338 KDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEI 415 (677)
T ss_pred HHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHH
Confidence 99999999999876 444221 1111 111 223578899999999999883 444555655443 3345
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047648 341 KKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRN 420 (537)
Q Consensus 341 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 420 (537)
++.++..|.+++..... .-|-..+|...|..-.+.++++.+..++++.++-++. +..+|......-...|+.+.|..
T Consensus 416 Rq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRa 492 (677)
T KOG1915|consen 416 RQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARA 492 (677)
T ss_pred HHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHH
Confidence 67899999999988765 4677888999999999999999999999999998776 88899999888889999999999
Q ss_pred HHHHHHHCC-CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHH-----hcC--------
Q 047648 421 IMNELVNNG-MRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFC-----QKG-------- 486 (537)
Q Consensus 421 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g-------- 486 (537)
+|.-.+... .......|...|+.-...|.++.|+.++++.++. .+...+|-++...-. ..+
T Consensus 493 ifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r-----t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~ 567 (677)
T KOG1915|consen 493 IFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR-----TQHVKVWISFAKFEASASEGQEDEDLAELEI 567 (677)
T ss_pred HHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh-----cccchHHHhHHHHhccccccccccchhhhhc
Confidence 999988752 2233567788888888999999999999999863 234446666665443 233
Q ss_pred ---CHHHHHHHHHHHHH
Q 047648 487 ---KLEDANGLLNELLE 500 (537)
Q Consensus 487 ---~~~~A~~~~~~~~~ 500 (537)
....|..+|++...
T Consensus 568 ~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 568 TDENIKRARKIFERANT 584 (677)
T ss_pred chhHHHHHHHHHHHHHH
Confidence 45678888888764
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.4e-11 Score=101.77 Aligned_cols=288 Identities=12% Similarity=0.050 Sum_probs=185.0
Q ss_pred CChHHHHHHHhcCCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhh
Q 047648 27 TDPNTVILQLFNSDADPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALS 106 (537)
Q Consensus 27 ~~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~ 106 (537)
++...+-.+=+...++|+.|.+.|.-+.+. .+.+..+.-.|.+.+-+.|..++|..+...+.++-+.....+.+
T Consensus 35 lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~l---- 108 (389)
T COG2956 35 LSRDYVKGLNFLLSNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLL---- 108 (389)
T ss_pred ccHHHHhHHHHHhhcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHH----
Confidence 444444443334456789999999999875 66778888899999999999999999999988875544333322
Q ss_pred hccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH
Q 047648 107 TCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNL 186 (537)
Q Consensus 107 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 186 (537)
....|.+-|...|-++.|.++|..+.+.+ .--..+...|+..|-+..+|++|.++-+++.+.+..+..
T Consensus 109 -----------Al~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~ 176 (389)
T COG2956 109 -----------ALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYR 176 (389)
T ss_pred -----------HHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccch
Confidence 33457788889999999999999888753 234556778888888888888888888888776544332
Q ss_pred H----HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 047648 187 D----SFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTF 262 (537)
Q Consensus 187 ~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 262 (537)
. .|.-+...+....+++.|..++.+..+.+.+ .+..--.+.+.... .|+++.|.+.++...+.+..--+.+.
T Consensus 177 ~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~---~g~y~~AV~~~e~v~eQn~~yl~evl 252 (389)
T COG2956 177 VEIAQFYCELAQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELA---KGDYQKAVEALERVLEQNPEYLSEVL 252 (389)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHh---ccchHHHHHHHHHHHHhChHHHHHHH
Confidence 2 3455555555667777777777777765321 33333444555555 67777777777777766443334555
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047648 263 NTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFC 340 (537)
Q Consensus 263 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 340 (537)
..|..+|.+.|+.++....+..+.+.. +....-..+...-....-.+.|...+.+-+.. +|+...+..++....
T Consensus 253 ~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l 326 (389)
T COG2956 253 EMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHL 326 (389)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhh
Confidence 666667777777777776666665542 22222333333333333344444444333332 466666666665544
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-09 Score=101.84 Aligned_cols=442 Identities=14% Similarity=0.090 Sum_probs=256.0
Q ss_pred ChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCC-CChHHHHHHhhhccCCCCchHHHHH
Q 047648 42 DPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKF-TSVSTIFHALSTCSDSLCRNSIIID 120 (537)
Q Consensus 42 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (537)
-|..-+.+++.++++........+|...+.++=.. ++++.+.++-.+++.... +.+..++++.... +|..-+
T Consensus 101 mpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvt-qH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~------~P~~~e 173 (835)
T KOG2047|consen 101 MPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVT-QHDRIWDLYLKFVESHGLPETSIRVYRRYLKV------APEARE 173 (835)
T ss_pred CCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchH-hhccchHHHHHHHHhCCChHHHHHHHHHHHhc------CHHHHH
Confidence 45666788888888877777777777776666443 455666666666665333 3666677766643 334466
Q ss_pred HHHHHHHHcCCchHHHHHHHHHhhCC------CCCChhhHHHHHHHHHhCCCh---hHHHHHHHHHHhCCCCCCHHHHHH
Q 047648 121 MLMLAYVKNMKPHLGFEAFKRAGDYG------LKSSVLSCNQLLRALVKEGKF---EDVEYVYKEMKRRRIELNLDSFNF 191 (537)
Q Consensus 121 ~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~ 191 (537)
-.+..++..+++++|-+.+...+... -+.+-..|..+-...++.-+. -....+++.+..+-...-...|++
T Consensus 174 eyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~S 253 (835)
T KOG2047|consen 174 EYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCS 253 (835)
T ss_pred HHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHH
Confidence 67888889999999999888876541 133445666666666655432 334555666555422222346888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcC----------------CC---CCCHHHHHHHHHHHHH
Q 047648 192 VLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKK----------------GG---IGKMYKADAVFKDMVE 252 (537)
Q Consensus 192 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----------------~~---~~~~~~a~~~~~~~~~ 252 (537)
|...|.+.|.++.|.+++++.... ..++.-|..+.+.|+.- +. ..+++-.+..|+.+..
T Consensus 254 LAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~ 331 (835)
T KOG2047|consen 254 LADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMN 331 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHh
Confidence 999999999999999999887764 23444455555554430 00 0112222333333333
Q ss_pred CCC-----------CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC------hhhHHHHHHHHHhCCCHHHHHH
Q 047648 253 NGI-----------LPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAG------VVTYNSLINGLCVDGKLDEAVA 315 (537)
Q Consensus 253 ~~~-----------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~ 315 (537)
... +-+...|..-.. +..|+..+....|.++.+. +.|- ...|..+...|-..|+.+.|..
T Consensus 332 rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRv 408 (835)
T KOG2047|consen 332 RRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARV 408 (835)
T ss_pred ccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHH
Confidence 210 112223322222 2346677777777776653 2221 2346667777778888888888
Q ss_pred HHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----------CCCC-------CHhHHHHHHHHHH
Q 047648 316 LRDEMMASGLKPN---VVTSNALINGFCKKKLVEKARVLFDDISEQ----------GLSP-------SVITYNTLIDAYC 375 (537)
Q Consensus 316 ~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----------~~~~-------~~~~~~~l~~~~~ 375 (537)
+|++..+..++.- ..+|......-.+..+++.|+++.+..... |..| +...|...++..-
T Consensus 409 ifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleE 488 (835)
T KOG2047|consen 409 IFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEE 488 (835)
T ss_pred HHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHH
Confidence 8888777544322 356666667777777778777777665321 0011 3344555566556
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHh---cCChH
Q 047648 376 KEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGL-VTYNILVGALCK---DGKSK 451 (537)
Q Consensus 376 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~g~~~ 451 (537)
..|-++....+++++.+..+. ++.........+..+.-++++.+++++-+..-..|+. ..|+..+.-+.+ ...++
T Consensus 489 s~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klE 567 (835)
T KOG2047|consen 489 SLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLE 567 (835)
T ss_pred HhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHH
Confidence 677777777778777776555 4443333333445556677777777766555323332 455555544433 22467
Q ss_pred HHHHHHHHHHHchhcCCCCCHHHHHHH--HHHHHhcCCHHHHHHHHHHHHH
Q 047648 452 KAVSLLDEMFKMEKEKKWPNIVTYNVL--IKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 452 ~A~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
.|+.+|+++++ +++|...-+-.| ...=-+.|-...|+.++++...
T Consensus 568 raRdLFEqaL~----~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 568 RARDLFEQALD----GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 77777777764 344432211111 1112234666666666666543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-10 Score=106.27 Aligned_cols=220 Identities=11% Similarity=0.126 Sum_probs=175.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHH
Q 047648 237 IGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVAL 316 (537)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 316 (537)
.|+...|..-|+..+.....++ ..|..+...|....+.++..+.|++....+.. ++.+|..-...+.-.+++++|..=
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHH
Confidence 5777788888888887754433 33778888899999999999999999887533 778888888888889999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 047648 317 RDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVL 396 (537)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 396 (537)
|++.+... +.+...|..+..+..+.+.+++++..|++..++ ++..+..|+.....+...++++.|.+.|+..++....
T Consensus 417 F~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 417 FQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 99998853 345567777777778899999999999999887 4447889999999999999999999999998865222
Q ss_pred -----CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 397 -----PD--VSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 397 -----p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
.+ +.+--.++..- -.+++..|..++++..+.+ +-....|..|.+.-.+.|+.++|+++|++...
T Consensus 495 ~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11 22222222222 3489999999999999875 34467899999999999999999999999865
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.2e-09 Score=98.90 Aligned_cols=423 Identities=15% Similarity=0.128 Sum_probs=282.4
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHH
Q 047648 40 DADPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIII 119 (537)
Q Consensus 40 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (537)
.+++...+.+.+.+++. ++....+.....-.+...|+-++|...++.-+++ + ....+.|
T Consensus 20 ~kQYkkgLK~~~~iL~k--~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~-d------------------~~S~vCw 78 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKK--FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN-D------------------LKSHVCW 78 (700)
T ss_pred HHHHHhHHHHHHHHHHh--CCccchhHHhccchhhcccchHHHHHHHHHHhcc-C------------------cccchhH
Confidence 45677788888888885 5555556666666777889999999988877665 2 4556889
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 047648 120 DMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKA 199 (537)
Q Consensus 120 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 199 (537)
..+.-.+-...++++|++.|+.+...+ +.|...|.-+.-.-++.|+++.....-....+.... ....|..++.++.-.
T Consensus 79 Hv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~-~ra~w~~~Avs~~L~ 156 (700)
T KOG1156|consen 79 HVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPS-QRASWIGFAVAQHLL 156 (700)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh-hHHHHHHHHHHHHHH
Confidence 888888888999999999999999875 457777877777778889998888888877776322 556788888888899
Q ss_pred CChhHHHHHHHHHHhCC-CCCChhhHHHHHHH------HhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHhc
Q 047648 200 GKLNKASDIMEDMKSLG-VSPKVVTYNILIDG------YCKKGGIGKMYKADAVFKDMVENGILPNEVTF-NTLIDGFCK 271 (537)
Q Consensus 200 g~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~------~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~~~~~ 271 (537)
|+...|..++++..+.. -.|+...+...... ... .|..++|.+.+..-... +. |...+ ..-...+.+
T Consensus 157 g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E---~g~~q~ale~L~~~e~~-i~-Dkla~~e~ka~l~~k 231 (700)
T KOG1156|consen 157 GEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIE---AGSLQKALEHLLDNEKQ-IV-DKLAFEETKADLLMK 231 (700)
T ss_pred HHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH---cccHHHHHHHHHhhhhH-HH-HHHHHhhhHHHHHHH
Confidence 99999999999988764 24666665443332 334 57778887777654432 22 33333 344567888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHH-HHHHHh-CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHH
Q 047648 272 DENISAAMKVFEEMGSHGIAAGVVTYNSL-INGLCV-DGKLDEAVALRDEMMASGLKPNVVTSNALINGFCK-KKLVEKA 348 (537)
Q Consensus 272 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a 348 (537)
.+++++|..+|..++.. .||...|... ..++.. .+..+....+|....+. .|....-..+--.... ..-.+..
T Consensus 232 l~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~v 307 (700)
T KOG1156|consen 232 LGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIV 307 (700)
T ss_pred HhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHH
Confidence 99999999999999987 4565555544 444443 33333333666665543 2221111111111111 1223344
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH----hCC----------CCCCHH--HHHHHHHHHHhc
Q 047648 349 RVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSML----DRG----------VLPDVS--TYNCLIAGLSRE 412 (537)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~----------~~p~~~--~~~~l~~~~~~~ 412 (537)
..++....+.|+++ ++..+...|-.-...+-..++.-.+. ..| -+|... ++..+.+.+-..
T Consensus 308 dkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~ 384 (700)
T KOG1156|consen 308 DKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKL 384 (700)
T ss_pred HHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHc
Confidence 45556666666653 33334433332222211111111111 111 134444 445677888899
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047648 413 GNVEGVRNIMNELVNNGMRAG-LVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDA 491 (537)
Q Consensus 413 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 491 (537)
|+++.|..+++..++. .|+ +..|..-...+...|++++|..+++++.+++ .+|...-.--+.-..++++.++|
T Consensus 385 g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD----~aDR~INsKcAKYmLrAn~i~eA 458 (700)
T KOG1156|consen 385 GDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD----TADRAINSKCAKYMLRANEIEEA 458 (700)
T ss_pred ccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc----chhHHHHHHHHHHHHHccccHHH
Confidence 9999999999999886 455 4566677789999999999999999998766 45655544666777889999999
Q ss_pred HHHHHHHHHcCC
Q 047648 492 NGLLNELLEKGL 503 (537)
Q Consensus 492 ~~~~~~~~~~g~ 503 (537)
.++...+.+.|.
T Consensus 459 ~~~~skFTr~~~ 470 (700)
T KOG1156|consen 459 EEVLSKFTREGF 470 (700)
T ss_pred HHHHHHhhhccc
Confidence 999999988764
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2e-11 Score=105.20 Aligned_cols=230 Identities=12% Similarity=0.001 Sum_probs=191.4
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 047648 120 DMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKA 199 (537)
Q Consensus 120 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 199 (537)
+.+.++|.+.|.+.+|.+.|+..++. .|-+.+|..|-++|.+-.+...|+.+|.+..+. ++-|+....-+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 46889999999999999999999885 567788888999999999999999999998876 333555567788889999
Q ss_pred CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 047648 200 GKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAM 279 (537)
Q Consensus 200 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 279 (537)
++.++|.++++...+.. +.++.....+...|.- .++.+-|+..++++.+-|+. +...|+.+.-+|.-.++++-++
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY---~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFY---DNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HhHHHHHHHHHHHHhcC-Cccceeeeeeeecccc---CCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhH
Confidence 99999999999998864 3355566566666666 78999999999999999987 8899999999999999999999
Q ss_pred HHHHHHHhCCCCCC--hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 280 KVFEEMGSHGIAAG--VVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISE 357 (537)
Q Consensus 280 ~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 357 (537)
..|++....-..|+ ...|..+.......|++..|.+.|+-....+ ..+...++.+.-.-.+.|++++|..++.....
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 99998876433333 4567778888888999999999999888764 45667888888888899999999999988776
Q ss_pred c
Q 047648 358 Q 358 (537)
Q Consensus 358 ~ 358 (537)
.
T Consensus 458 ~ 458 (478)
T KOG1129|consen 458 V 458 (478)
T ss_pred h
Confidence 5
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.4e-08 Score=94.39 Aligned_cols=429 Identities=14% Similarity=0.191 Sum_probs=268.8
Q ss_pred CCCCHHHHHHHHHHHHh----cCCchHH-HHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCch
Q 047648 59 ASHSLLLTGRLLHSLVV----AKKYPKI-RSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPH 133 (537)
Q Consensus 59 ~~~~~~~~~~l~~~~~~----~~~~~~a-~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 133 (537)
..++...|..+-+++-+ ....+.. ...++-+.++|....-+..|.+....-+. .....+|...+......|-++
T Consensus 77 ~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpv-tqH~rIW~lyl~Fv~~~~lPe 155 (835)
T KOG2047|consen 77 LCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPV-TQHDRIWDLYLKFVESHGLPE 155 (835)
T ss_pred cCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCch-HhhccchHHHHHHHHhCCChH
Confidence 34445555544444322 1223333 23455566777777777777766554322 223367888888888888888
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCChh---H
Q 047648 134 LGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRR------IELNLDSFNFVLNGLCKAGKLN---K 204 (537)
Q Consensus 134 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~---~ 204 (537)
-++.+|++.++. ++..-+-.+..+++.+++++|.+.+....... .+-+...|.-+-...+++-+.- .
T Consensus 156 ts~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~sln 231 (835)
T KOG2047|consen 156 TSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLN 231 (835)
T ss_pred HHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccC
Confidence 888888888763 33346667788888888888888887765431 2334445655555555543332 3
Q ss_pred HHHHHHHHHhCCCCCC--hhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---------
Q 047648 205 ASDIMEDMKSLGVSPK--VVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDE--------- 273 (537)
Q Consensus 205 a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--------- 273 (537)
...+++.+... -+| ...|+.|..-|.+ .|.+++|.+++++.... .....-|+.+.++|+.-.
T Consensus 232 vdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr---~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me 304 (835)
T KOG2047|consen 232 VDAIIRGGIRR--FTDQLGFLWCSLADYYIR---SGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME 304 (835)
T ss_pred HHHHHHhhccc--CcHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555443 233 3467888888888 78888888888887764 224445555666555311
Q ss_pred -------------CHHHHHHHHHHHHhCC-----------CCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--
Q 047648 274 -------------NISAAMKVFEEMGSHG-----------IAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKP-- 327 (537)
Q Consensus 274 -------------~~~~a~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-- 327 (537)
+++-.+.-|+.+...+ -+.++..|..-+. ...|+..+....+.++.+. +.|
T Consensus 305 ~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~k 381 (835)
T KOG2047|consen 305 LADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKK 381 (835)
T ss_pred hhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCccc
Confidence 1122222333332221 0112222322222 2346677777888887764 222
Q ss_pred ----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---
Q 047648 328 ----NVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPS---VITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLP--- 397 (537)
Q Consensus 328 ----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--- 397 (537)
-...|..+...|-..|+++.|..+|++..+...+.- ..+|..-...-.+..+++.|++++++.....-.|
T Consensus 382 a~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~ 461 (835)
T KOG2047|consen 382 AVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELE 461 (835)
T ss_pred CCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhh
Confidence 235688889999999999999999999887633311 3455555666677888999999988876431111
Q ss_pred --------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047648 398 --------------DVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKM 463 (537)
Q Consensus 398 --------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 463 (537)
+...|..++..-...|-++....+++++++..+. ++.+.......+-...-++++.++|++-+.+
T Consensus 462 ~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~L 540 (835)
T KOG2047|consen 462 YYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISL 540 (835)
T ss_pred hhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCcc
Confidence 2345666777777789999999999999987643 3333333444455566689999999887653
Q ss_pred hhcCCCCC-HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCH
Q 047648 464 EKEKKWPN-IVTYNVLIKGFCQ---KGKLEDANGLLNELLEKGLIPNQ 507 (537)
Q Consensus 464 ~~~~~~~~-~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~p~~ 507 (537)
-+ +|+ ...|+..+..+.+ ...++.|..+|++.++ |.+|..
T Consensus 541 Fk---~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~ 584 (835)
T KOG2047|consen 541 FK---WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEH 584 (835)
T ss_pred CC---CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHH
Confidence 32 454 4678888877665 3368999999999999 666764
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.1e-10 Score=115.04 Aligned_cols=271 Identities=11% Similarity=0.063 Sum_probs=184.6
Q ss_pred ChhhHHHHHHHHhc--CCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh---------ccCCHHHHHHHHHHHHhC
Q 047648 220 KVVTYNILIDGYCK--KGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFC---------KDENISAAMKVFEEMGSH 288 (537)
Q Consensus 220 ~~~~~~~ll~~~~~--~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~---------~~g~~~~a~~~~~~~~~~ 288 (537)
+...|...+.+... ....+..++|...|++..+.... +...|..+..++. ..+++++|...+++..+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 44455555555321 11245677889999988876322 4455555554443 234588999999998876
Q ss_pred CCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHH
Q 047648 289 GIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYN 368 (537)
Q Consensus 289 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 368 (537)
+ +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+...|++++|...+++..+.++. +...+.
T Consensus 334 d-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~ 410 (553)
T PRK12370 334 D-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGI 410 (553)
T ss_pred C-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHH
Confidence 4 3367778888888888999999999999988864 445667888888899999999999999998887544 233333
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC
Q 047648 369 TLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDG 448 (537)
Q Consensus 369 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 448 (537)
.++..+...|++++|...++++.+...+-++..+..+..++...|+.++|...++++.... +.+....+.+...|...|
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH
Confidence 4444566788899999999888766433255567778888888999999999998876642 333445566666777777
Q ss_pred ChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047648 449 KSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKG 502 (537)
Q Consensus 449 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 502 (537)
++|...++.+.+.... .+....+ +...+.-.|+.+.+..+ +++.+.|
T Consensus 490 --~~a~~~l~~ll~~~~~--~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 490 --ERALPTIREFLESEQR--IDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred --HHHHHHHHHHHHHhhH--hhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 4777777777653222 2322223 44455556777777766 7777654
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.7e-09 Score=99.20 Aligned_cols=399 Identities=12% Similarity=0.018 Sum_probs=278.5
Q ss_pred HHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHH----HHhC---------CCCCCHH
Q 047648 121 MLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKE----MKRR---------RIELNLD 187 (537)
Q Consensus 121 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~---------~~~~~~~ 187 (537)
-+++++.-.|+++.|..+...-.-. ..|..........+.+..+++.|..++.. +..- .+.+|..
T Consensus 54 ~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~ 131 (611)
T KOG1173|consen 54 WLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSA 131 (611)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcc
Confidence 4778888889999998887766432 45777888888899999999999999882 2110 0111111
Q ss_pred H----HHH-------HHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHH---HHHHHhcCC--------------CCCC
Q 047648 188 S----FNF-------VLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNI---LIDGYCKKG--------------GIGK 239 (537)
Q Consensus 188 ~----~~~-------l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---ll~~~~~~~--------------~~~~ 239 (537)
- -+. -...|....+.++|...+.+.... |...+.. ++....-.. -.+.
T Consensus 132 ~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~----D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~e 207 (611)
T KOG1173|consen 132 GEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA----DAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKE 207 (611)
T ss_pred cccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc----chhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhh
Confidence 1 011 112344556677777777776554 3333322 222221100 0011
Q ss_pred HHHHHHHHHHHHH-----------------CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 047648 240 MYKADAVFKDMVE-----------------NGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLIN 302 (537)
Q Consensus 240 ~~~a~~~~~~~~~-----------------~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 302 (537)
..+-++.+-++.. .+..-+........+-+...+++.+..++.+...+.. ++....+..-|.
T Consensus 208 d~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia 286 (611)
T KOG1173|consen 208 DVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIA 286 (611)
T ss_pred HHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHH
Confidence 1111111111110 0111233333444556777899999999999988763 556667777778
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHH
Q 047648 303 GLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMED 382 (537)
Q Consensus 303 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 382 (537)
++...|+..+-..+-.++++. .|-...+|-++...|...|+..+|++.|.+....+.. -...|-.+...|+-.|..+.
T Consensus 287 ~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQ 364 (611)
T KOG1173|consen 287 CLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQ 364 (611)
T ss_pred HHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHH
Confidence 999999999998888888886 3556789999999999999999999999998775433 34578889999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 383 AFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 383 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
|+..+...-+.-+. ...-+-.+.--|.+.++++.|.++|.+..... |.|+.+++-+.-.....+.+.+|..+|+..+.
T Consensus 365 AmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~ 442 (611)
T KOG1173|consen 365 AMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALE 442 (611)
T ss_pred HHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHH
Confidence 99999888765222 22223344556788999999999999999874 77889999999999999999999999999874
Q ss_pred chhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCcCCccCCCC
Q 047648 463 MEKEKKW---PNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMMEKGFIPDIEGHMY 531 (537)
Q Consensus 463 ~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~l~ 531 (537)
.-+...+ .-..+++.|..+|.+.+++++|+..+++.+... +-+..++..+.-.+...|+++.|..+.-
T Consensus 443 ~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fh 513 (611)
T KOG1173|consen 443 VIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFH 513 (611)
T ss_pred HhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHH
Confidence 2211111 123468889999999999999999999999853 2367889999999999999999876653
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.9e-08 Score=88.08 Aligned_cols=392 Identities=12% Similarity=0.054 Sum_probs=260.2
Q ss_pred chHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCC-C-hhHH-------------HHHHHHHH
Q 047648 114 RNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEG-K-FEDV-------------EYVYKEMK 178 (537)
Q Consensus 114 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~-~~~a-------------~~~~~~~~ 178 (537)
.+...-...+.+|...++-+.|+..+...... ....-.|.++.-+.+.| + ++++ +..+.-..
T Consensus 95 ~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t---~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll 171 (564)
T KOG1174|consen 95 GDAEQRRRAAECYRQIGNTDMAIETLLQVPPT---LRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALL 171 (564)
T ss_pred ccHHHHHHHHHHHHHHccchHHHHHHhcCCcc---ccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHH
Confidence 34455556788888889988888877766542 12223333443333332 1 2221 11111111
Q ss_pred hCC---------------CCCCHHHHHHHHHHHH--hcCChhHHHHHHHHHHhC-CCCCChhhHHHHHHHHhcCCCCCCH
Q 047648 179 RRR---------------IELNLDSFNFVLNGLC--KAGKLNKASDIMEDMKSL-GVSPKVVTYNILIDGYCKKGGIGKM 240 (537)
Q Consensus 179 ~~~---------------~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~~ 240 (537)
+.+ ++|+..+...-+.+++ -.++...+...+-.+... -++-|+.....+...+.. .|+.
T Consensus 172 ~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~---~Gdn 248 (564)
T KOG1174|consen 172 ELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYY---NGDY 248 (564)
T ss_pred HHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhh---hcCc
Confidence 111 2233333333333333 334444444444433332 234466677788888888 8888
Q ss_pred HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHH
Q 047648 241 YKADAVFKDMVENGILPN-EVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDE 319 (537)
Q Consensus 241 ~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 319 (537)
++|+..|++....+ |+ ........-.+.+.|+.+....+...+.... .-+...|-.-........++..|+.+-++
T Consensus 249 ~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK 325 (564)
T KOG1174|consen 249 FQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEK 325 (564)
T ss_pred hHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHH
Confidence 89999998877642 32 2222333344557788888887777766542 12344455555556678889999999988
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 047648 320 MMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDV 399 (537)
Q Consensus 320 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 399 (537)
.++.. +.+...+..-...+...++.++|.-.|+......+ -+...|..|+.+|...|++.+|..+.+...+. .+.+.
T Consensus 326 ~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA 402 (564)
T KOG1174|consen 326 CIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSA 402 (564)
T ss_pred HhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcch
Confidence 88754 33455666666778889999999999998876532 37889999999999999999999888877665 23366
Q ss_pred HHHHHHH-HHHH-hcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHH
Q 047648 400 STYNCLI-AGLS-REGNVEGVRNIMNELVNNGMRAG-LVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYN 476 (537)
Q Consensus 400 ~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 476 (537)
.++..+. .+|. ...--++|.+++++..+. .|+ ....+.+...+...|..+.++.++++.+. ..||....+
T Consensus 403 ~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~-----~~~D~~LH~ 475 (564)
T KOG1174|consen 403 RSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI-----IFPDVNLHN 475 (564)
T ss_pred hhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh-----hccccHHHH
Confidence 6666663 3332 334468899999988875 454 46778888999999999999999999975 368999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCcCCc
Q 047648 477 VLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMMEKGFIPDI 526 (537)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a 526 (537)
.|...+...+.+++|++.|...+. +.|+...--.=++.+.+...-++|
T Consensus 476 ~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~~~sl~Gl~~lEK~~~~~DA 523 (564)
T KOG1174|consen 476 HLGDIMRAQNEPQKAMEYYYKALR--QDPKSKRTLRGLRLLEKSDDESDA 523 (564)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh--cCccchHHHHHHHHHHhccCCCCc
Confidence 999999999999999999999998 667765554555556666655555
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.5e-10 Score=101.96 Aligned_cols=200 Identities=14% Similarity=0.073 Sum_probs=130.1
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 047648 294 VVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDA 373 (537)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 373 (537)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...+++..+.... +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 3445555566666666666666666665542 233455566666666667777777776666655332 44556666666
Q ss_pred HHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHH
Q 047648 374 YCKEGRMEDAFAMRNSMLDRGVL-PDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKK 452 (537)
Q Consensus 374 ~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 452 (537)
+...|++++|...+++..+.... .....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 77777777777777777654221 234455666677777788888888877777653 3345667777777888888888
Q ss_pred HHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 453 AVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 453 A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
|...++++.+. .+.+...+..++..+...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT----YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh----CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 88888877653 134556666677777777888888877777654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.9e-11 Score=104.28 Aligned_cols=233 Identities=13% Similarity=0.021 Sum_probs=194.7
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 047648 263 NTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKK 342 (537)
Q Consensus 263 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 342 (537)
+.+.++|.+.|.+.+|.+.++...+. .|-+.||..|-..|.+..++..|+.++.+-++. ++-|........+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 67888999999999999999988775 467788889999999999999999999998875 334444445667788888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047648 343 KLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIM 422 (537)
Q Consensus 343 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 422 (537)
++.++|.++++...+.... ++.....+...|.-.++++.|+..+++++..|+. ++..|+.+.-+|.-.++++-++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 9999999999999887543 6777777888888999999999999999999988 8999999999999999999999999
Q ss_pred HHHHHCCCCCC--hHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 423 NELVNNGMRAG--LVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 423 ~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
++....-..|+ ..+|-.+.....-.||+..|.+.|+-++..+ ..+...++.|...-.+.|+.++|..+++....
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d----~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD----AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC----cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 98887643344 4678788888888999999999999887422 44678899999888999999999999998877
Q ss_pred cCCCCC
Q 047648 501 KGLIPN 506 (537)
Q Consensus 501 ~g~~p~ 506 (537)
+.|+
T Consensus 458 --~~P~ 461 (478)
T KOG1129|consen 458 --VMPD 461 (478)
T ss_pred --hCcc
Confidence 4455
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.9e-09 Score=101.06 Aligned_cols=293 Identities=14% Similarity=0.126 Sum_probs=206.9
Q ss_pred HHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---
Q 047648 123 MLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKA--- 199 (537)
Q Consensus 123 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 199 (537)
...+...|++++|++.++..... +.............+.+.|+.++|..+|..++++++. |..-|..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhccc
Confidence 45568889999999999886654 4445666778888999999999999999999998643 555555555555222
Q ss_pred --CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 047648 200 --GKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKM-YKADAVFKDMVENGILPNEVTFNTLIDGFCKDENIS 276 (537)
Q Consensus 200 --g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~-~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 276 (537)
.+.+...++++++.+.- |.......+.-.+.. -..+ ..+...+..+...|++ .+|..+-..|......+
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~---g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLE---GDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAA 160 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCC---HHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHH
Confidence 35677888888887753 444444444333333 1223 2455677777788865 45667777777666666
Q ss_pred HHHHHHHHHHhC----C----------CCCChh--hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047648 277 AAMKVFEEMGSH----G----------IAAGVV--TYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFC 340 (537)
Q Consensus 277 ~a~~~~~~~~~~----~----------~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 340 (537)
-..+++...... + -+|+.. ++..+...|...|++++|++++++.++.. +..+..|..-...+-
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilK 239 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILK 239 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence 666666665432 1 123332 34556677888999999999999998863 233678888889999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--------HHHHHHHHHHHhc
Q 047648 341 KKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDV--------STYNCLIAGLSRE 412 (537)
Q Consensus 341 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--------~~~~~l~~~~~~~ 412 (537)
..|++.+|...++.....+.. |...-+..+..+.++|+.++|.+++....+.+..|.. ........+|.+.
T Consensus 240 h~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~ 318 (517)
T PF12569_consen 240 HAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ 318 (517)
T ss_pred HCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887655 7777777888889999999999999988776543322 1224456778888
Q ss_pred CCHHHHHHHHHHHHH
Q 047648 413 GNVEGVRNIMNELVN 427 (537)
Q Consensus 413 ~~~~~a~~~~~~~~~ 427 (537)
|++..|++.|..+.+
T Consensus 319 ~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 319 GDYGLALKRFHAVLK 333 (517)
T ss_pred hhHHHHHHHHHHHHH
Confidence 998888887776654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.4e-10 Score=99.72 Aligned_cols=200 Identities=13% Similarity=0.053 Sum_probs=150.0
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047648 258 NEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALIN 337 (537)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 337 (537)
....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 34566677777888888888888888876653 3346667777778888888888888888877754 345566777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 047648 338 GFCKKKLVEKARVLFDDISEQGL-SPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVE 416 (537)
Q Consensus 338 ~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 416 (537)
.+...|++++|...+++..+... ......+..+..++...|++++|...+++..+..+. +...+..+...+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHH
Confidence 88888888888888888776422 123445666777888888888898888888876443 5667778888888889999
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047648 417 GVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMF 461 (537)
Q Consensus 417 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 461 (537)
+|...+++..+. .+.+...+..++..+...|+.++|..+.+.+.
T Consensus 187 ~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 187 DARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999888888876 34556677777788888888888888877764
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.4e-09 Score=92.76 Aligned_cols=201 Identities=12% Similarity=0.133 Sum_probs=104.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHHcCCCCCH-hHHHHHHH
Q 047648 299 SLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALING-----FCKKKLVEKARVLFDDISEQGLSPSV-ITYNTLID 372 (537)
Q Consensus 299 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~-----~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~ 372 (537)
.++-.|.++++..+|..+.+++.-. .|.......+..+ ........-|...|+-.-+.+..-|. .--..+..
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs 367 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMAS 367 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHH
Confidence 3444566777777777766654311 1222222222111 11122345555555555444333222 22334455
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHH
Q 047648 373 AYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKK 452 (537)
Q Consensus 373 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 452 (537)
++.-..++++.+-.+..+..--...|... ..+.++++..|++.+|+++|-++....++.+..-...|..+|.++++++.
T Consensus 368 ~fFL~~qFddVl~YlnSi~sYF~NdD~Fn-~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~l 446 (557)
T KOG3785|consen 368 YFFLSFQFDDVLTYLNSIESYFTNDDDFN-LNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQL 446 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhh-hHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchH
Confidence 55555667777766666665433323333 34566777777777777777666554433333333455667777777777
Q ss_pred HHHHHHHHHHchhcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhH
Q 047648 453 AVSLLDEMFKMEKEKKWPNIVT-YNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTY 510 (537)
Q Consensus 453 A~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 510 (537)
|++++-++- .+.+..+ ...+...|.+.+.+--|.+.|+.+.. +.|+++.|
T Consensus 447 AW~~~lk~~------t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnW 497 (557)
T KOG3785|consen 447 AWDMMLKTN------TPSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENW 497 (557)
T ss_pred HHHHHHhcC------CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCcccc
Confidence 777665542 1112222 23334566677777777777777666 34554444
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=8e-10 Score=110.86 Aligned_cols=269 Identities=15% Similarity=0.084 Sum_probs=185.4
Q ss_pred CCChhhHHHHHHHHHh-----CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---------cCChhHHHHHHHHHH
Q 047648 148 KSSVLSCNQLLRALVK-----EGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCK---------AGKLNKASDIMEDMK 213 (537)
Q Consensus 148 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~ 213 (537)
+.+...|...+++... .+.+++|...|++..+..+. +...|..+..++.. .+++++|...+++..
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 4566666666665422 13467899999998887433 45566666655442 245789999999998
Q ss_pred hCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC
Q 047648 214 SLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAG 293 (537)
Q Consensus 214 ~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 293 (537)
+... -+...+..+...+.. .|++++|...+++..+.+. .+...+..+...+...|++++|...+++..+.... +
T Consensus 332 ~ldP-~~~~a~~~lg~~~~~---~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~ 405 (553)
T PRK12370 332 ELDH-NNPQALGLLGLINTI---HSEYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-R 405 (553)
T ss_pred hcCC-CCHHHHHHHHHHHHH---ccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-C
Confidence 8753 256677777777777 7999999999999988743 25677888888999999999999999999886432 2
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 047648 294 VVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDA 373 (537)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 373 (537)
...+..++..+...|++++|+..++++.....+.+...+..+..++...|+.++|...+.++...... +....+.+...
T Consensus 406 ~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~ 484 (553)
T PRK12370 406 AAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAE 484 (553)
T ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHH
Confidence 23334445557778999999999999876542234556777888888999999999999887665222 44455666667
Q ss_pred HHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047648 374 YCKEGRMEDAFAMRNSMLDR-GVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNG 429 (537)
Q Consensus 374 ~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 429 (537)
|...| +.|...++.+.+. ...+....+ +-..+.-.|+.+.+... +++.+.+
T Consensus 485 ~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 485 YCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 77777 4777777776653 112222222 33445556776666665 7777653
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.4e-08 Score=95.84 Aligned_cols=296 Identities=16% Similarity=0.116 Sum_probs=214.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHh-cCC
Q 047648 157 LLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYC-KKG 235 (537)
Q Consensus 157 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~ 235 (537)
....+...|++++|++.++.-... +.............+.+.|+.++|..++..+++.+ |+...|...+..+. ...
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhc
Confidence 345678899999999999886554 44356667888999999999999999999999985 56666555444443 210
Q ss_pred --CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH-HHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHH
Q 047648 236 --GIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENIS-AAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDE 312 (537)
Q Consensus 236 --~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 312 (537)
..++.+....+++++... -|.......+.-.+.....+. .+..++..+...|+| .+|+.+-..|......+-
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred ccccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHH
Confidence 023567788899988765 244444444433333333443 344566667777765 356666666666666666
Q ss_pred HHHHHHHHHHc----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh
Q 047648 313 AVALRDEMMAS----G----------LKPNV--VTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCK 376 (537)
Q Consensus 313 A~~~~~~~~~~----~----------~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 376 (537)
..+++...... + -+|.. .++..+...|...|++++|+.++++..++.+. .+..|..-...+-.
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh 240 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKH 240 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHH
Confidence 66666665432 1 12333 34566678888999999999999999987433 47788888999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH------HH--HHHHHHHHhcC
Q 047648 377 EGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLV------TY--NILVGALCKDG 448 (537)
Q Consensus 377 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~--~~l~~~~~~~g 448 (537)
.|++.+|.+.++.....+.. |...-+-....+.+.|++++|.+++....+.+..|... +| .....+|.+.|
T Consensus 241 ~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~ 319 (517)
T PF12569_consen 241 AGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQG 319 (517)
T ss_pred CCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998766 88888888899999999999999999988776433221 11 45567899999
Q ss_pred ChHHHHHHHHHHHH
Q 047648 449 KSKKAVSLLDEMFK 462 (537)
Q Consensus 449 ~~~~A~~~~~~~~~ 462 (537)
++..|++.|..+.+
T Consensus 320 ~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 320 DYGLALKRFHAVLK 333 (517)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999998887765
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-07 Score=91.24 Aligned_cols=409 Identities=13% Similarity=0.074 Sum_probs=235.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHH
Q 047648 59 ASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEA 138 (537)
Q Consensus 59 ~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 138 (537)
+..+..+|..+.-++.+.|+++.+.+.++++..- . ......|..+...|...|....|+.+
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~------------------~~~~e~w~~~als~saag~~s~Av~l 379 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-S------------------FGEHERWYQLALSYSAAGSDSKAVNL 379 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-h------------------hhhHHHHHHHHHHHHHhccchHHHHH
Confidence 4445555666666666666666655555554432 0 12235677777777788888888887
Q ss_pred HHHHhhCCCCCC-hhhHHHHHHHHHh-CCChhHHHHHHHHHHhC--C--CCCCHHHHHHHHHHHHhc-----------CC
Q 047648 139 FKRAGDYGLKSS-VLSCNQLLRALVK-EGKFEDVEYVYKEMKRR--R--IELNLDSFNFVLNGLCKA-----------GK 201 (537)
Q Consensus 139 ~~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~--~--~~~~~~~~~~l~~~~~~~-----------g~ 201 (537)
++........|+ ...+-..-..|.+ .+..+++...-.+.... + -......|..+.-+|... ..
T Consensus 380 l~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~ 459 (799)
T KOG4162|consen 380 LRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDAL 459 (799)
T ss_pred HHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHH
Confidence 777665432233 3333333334443 34555555555544441 1 112333444444444332 12
Q ss_pred hhHHHHHHHHHHhCCC-CCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 047648 202 LNKASDIMEDMKSLGV-SPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMK 280 (537)
Q Consensus 202 ~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 280 (537)
..++++.+++..+.+. .|++..|..+- |+. .++.+.|.+..++..+-+-.-+...|..+.-.+...+++.+|+.
T Consensus 460 h~kslqale~av~~d~~dp~~if~lalq--~A~---~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~ 534 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPLVIFYLALQ--YAE---QRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALD 534 (799)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHH--HHH---HHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHH
Confidence 2356666777666543 23333333333 333 56777788887777776555577777777777777788888888
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc---------------------CC-----CC--CHHHH
Q 047648 281 VFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMAS---------------------GL-----KP--NVVTS 332 (537)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------------------~~-----~~--~~~~~ 332 (537)
+.+.....- .-|-.....-+..-..-++.++++.....+..- |. .| ...++
T Consensus 535 vvd~al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~s 613 (799)
T KOG4162|consen 535 VVDAALEEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTS 613 (799)
T ss_pred HHHHHHHHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhh
Confidence 777665431 101111111112222344555554444333220 00 00 01111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCC------HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 047648 333 NALINGFCKKKLVEKARVLFDDISEQGL--SPS------VITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNC 404 (537)
Q Consensus 333 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 404 (537)
..+.......+.......- +..... .|+ ...|......+.+.+..++|...+.+.....+. .+..|..
T Consensus 614 r~ls~l~a~~~~~~~se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~ 689 (799)
T KOG4162|consen 614 RYLSSLVASQLKSAGSELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYL 689 (799)
T ss_pred HHHHHHHHhhhhhcccccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHH
Confidence 1111111100000000000 111111 122 123555666777888888988888888765433 6677777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHH--HHHHHHHchhcCCCCCHHHHHHHHHHH
Q 047648 405 LIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVS--LLDEMFKMEKEKKWPNIVTYNVLIKGF 482 (537)
Q Consensus 405 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~ 482 (537)
....+...|.+++|.+.|......+ |.++....++..++.+.|+..-|.. ++.++++.+ +.+...|-.+...+
T Consensus 690 ~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d----p~n~eaW~~LG~v~ 764 (799)
T KOG4162|consen 690 RGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD----PLNHEAWYYLGEVF 764 (799)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC----CCCHHHHHHHHHHH
Confidence 7788888999999999999888865 4557888999999999998877777 899998755 45888999999999
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 047648 483 CQKGKLEDANGLLNELLEK 501 (537)
Q Consensus 483 ~~~g~~~~A~~~~~~~~~~ 501 (537)
.+.|+.++|.+.|....+.
T Consensus 765 k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 765 KKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHccchHHHHHHHHHHHhh
Confidence 9999999999999988873
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.4e-09 Score=104.04 Aligned_cols=241 Identities=22% Similarity=0.181 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhC-----C-CCCChh-hHHHHHHHHHhCCCHHHHHHHHHHHHHc-----CC-
Q 047648 259 EVTFNTLIDGFCKDENISAAMKVFEEMGSH-----G-IAAGVV-TYNSLINGLCVDGKLDEAVALRDEMMAS-----GL- 325 (537)
Q Consensus 259 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~- 325 (537)
..+...+...|...|+++.|+.+++..... | ..|... ..+.+...|...+++++|..+|+++... |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456666888999999999999999887553 2 122322 2334667888999999999999998763 21
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCC-CCH-hHHHHHHHHHHhcCChHHHHHHHHHHHhC---C
Q 047648 326 KP-NVVTSNALINGFCKKKLVEKARVLFDDISEQ-----GLS-PSV-ITYNTLIDAYCKEGRMEDAFAMRNSMLDR---G 394 (537)
Q Consensus 326 ~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~ 394 (537)
.| -..+++.|..+|.+.|++++|...+++..+. +.. |.. ..++.+...+...+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 12 2356788888899999999999888876542 221 122 23566777888999999999999876643 1
Q ss_pred CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C--CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047648 395 VLPD----VSTYNCLIAGLSREGNVEGVRNIMNELVNN-----G--MRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKM 463 (537)
Q Consensus 395 ~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 463 (537)
+.++ ..+++.|...|...|++++|.+++++++.. | ..-....++.+...|.+.+.+++|.++|.+...+
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 458899999999999999999999988754 1 1122456788899999999999999999988765
Q ss_pred hhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 464 EKEKKWPN----IVTYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 464 ~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
. .-+.|+ ..+|..|...|.+.|+++.|.++.+....
T Consensus 439 ~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 439 M-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred H-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 4 333333 46889999999999999999999988763
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.5e-10 Score=108.34 Aligned_cols=252 Identities=14% Similarity=0.213 Sum_probs=146.2
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 047648 139 FKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVS 218 (537)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 218 (537)
+-.+...|+.|+..+|..+|.-|+..|+.+.|- +|..|.-+..+.+...|+.++.+....++.+.+. .
T Consensus 13 la~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------e 80 (1088)
T KOG4318|consen 13 LALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------E 80 (1088)
T ss_pred HHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------C
Confidence 334445555566666666666666666665555 5555555555555555555555555555555444 3
Q ss_pred CChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHH----HCC-----------------CCCCHHHHHHHHHHHhccCCHHH
Q 047648 219 PKVVTYNILIDGYCKKGGIGKMYKADAVFKDMV----ENG-----------------ILPNEVTFNTLIDGFCKDENISA 277 (537)
Q Consensus 219 ~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~----~~~-----------------~~p~~~~~~~l~~~~~~~g~~~~ 277 (537)
|.+.+|..|..+|...|+.-.++...+.+.... ..| ..||. ...+....-.|-++.
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAILLLVLEGLWAQ 157 (1088)
T ss_pred CchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHHHHHHHHHHHH
Confidence 455556666666655222222222222121111 111 22222 223333444566666
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047648 278 AMKVFEEMGSHGIAAGVVTYNSLINGLCVDG-KLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDIS 356 (537)
Q Consensus 278 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 356 (537)
+++++..+....... +...+++-+.... .+++-....+...+ .|++.+|..++++-...|+.+.|..++.+|.
T Consensus 158 llkll~~~Pvsa~~~---p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emk 231 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWNA---PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMK 231 (1088)
T ss_pred HHHHHhhCCcccccc---hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 666665554321110 1111233333222 23333333333333 5888889999998888999999999999999
Q ss_pred HcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 047648 357 EQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGN 414 (537)
Q Consensus 357 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 414 (537)
+.|++.+..-|..|+-+ .+....+..+++-|.+.|+.|+..|+.-.+..+...|.
T Consensus 232 e~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 232 EKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 98888888777777655 77788888888888888999999888887777776554
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.5e-09 Score=102.05 Aligned_cols=258 Identities=11% Similarity=0.099 Sum_probs=126.8
Q ss_pred hcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhcc-------CCCCchHHHHHHHHHHHH
Q 047648 55 KELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCS-------DSLCRNSIIIDMLMLAYV 127 (537)
Q Consensus 55 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~ 127 (537)
+..|..|++.+|..+|.-|+..|+.+.|- ++.-| +..+...-..+|..+.... +...|-+.+|..|..+|.
T Consensus 17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm-~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr 94 (1088)
T KOG4318|consen 17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFM-EIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYR 94 (1088)
T ss_pred HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhh-hcccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHH
Confidence 45688999999999999999999998887 44433 3334444445555554331 112345578888888888
Q ss_pred HcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHH
Q 047648 128 KNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRR-RIELNLDSFNFVLNGLCKAGKLNKAS 206 (537)
Q Consensus 128 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~ 206 (537)
+.||... ++..++ ....+...+...|--.....++..+.-. +.-||.. .++....-.|-++.++
T Consensus 95 ~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~eglwaqll 159 (1088)
T KOG4318|consen 95 IHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLL 159 (1088)
T ss_pred hccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHHHHHHH
Confidence 8888765 222222 1112233333444333333333332111 1122222 1223333344445555
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 047648 207 DIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMG 286 (537)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 286 (537)
+++..+....-. . .+..+++-+... ...+++-....+.+.+ .|++.+|..++.+-.-+|+.+.|..++.+|.
T Consensus 160 kll~~~Pvsa~~-~--p~~vfLrqnv~~--ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emk 231 (1088)
T KOG4318|consen 160 KLLAKVPVSAWN-A--PFQVFLRQNVVD--NTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMK 231 (1088)
T ss_pred HHHhhCCccccc-c--hHHHHHHHhccC--CchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 544443321100 0 000012222221 2222222222222222 3555555555555555556666666666665
Q ss_pred hCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047648 287 SHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFC 340 (537)
Q Consensus 287 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 340 (537)
+.|++.+..-|-.++-+ .++...+..++.-|...|+.|+..|+...+..+.
T Consensus 232 e~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l 282 (1088)
T KOG4318|consen 232 EKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQL 282 (1088)
T ss_pred HcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhh
Confidence 55555555444444333 4555555555555555555555555544443333
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.2e-07 Score=87.21 Aligned_cols=408 Identities=13% Similarity=0.102 Sum_probs=218.3
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCC
Q 047648 67 GRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYG 146 (537)
Q Consensus 67 ~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 146 (537)
-.=++.....+.+++|.+....++..+ |.+...+..=+-++.+.+++++|+.+.+.-...
T Consensus 16 ~t~ln~~~~~~e~e~a~k~~~Kil~~~-------------------pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~- 75 (652)
T KOG2376|consen 16 LTDLNRHGKNGEYEEAVKTANKILSIV-------------------PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL- 75 (652)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHhcC-------------------CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh-
Confidence 334566667778888888777776653 344555666666777888888887554433211
Q ss_pred CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-ChhhHH
Q 047648 147 LKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSP-KVVTYN 225 (537)
Q Consensus 147 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~ 225 (537)
..+.+.+--=.-+..+.+..++|+..++...+ .+..+...-...+.+.|++++|.++|+.+.+.+.+- +...-.
T Consensus 76 -~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~ 150 (652)
T KOG2376|consen 76 -LVINSFFFEKAYCEYRLNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRA 150 (652)
T ss_pred -hhcchhhHHHHHHHHHcccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 11111110112233467778888877772222 134456666677778888888888888886653210 111111
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHH---HHHHHhccCCHHHHHHHHHHHHh--------CCC----
Q 047648 226 ILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNT---LIDGFCKDENISAAMKVFEEMGS--------HGI---- 290 (537)
Q Consensus 226 ~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~---l~~~~~~~g~~~~a~~~~~~~~~--------~~~---- 290 (537)
.++.+-.. ..+. + +......| ..+|.. ..-.+...|++.+|+++++.... ...
T Consensus 151 nl~a~~a~-------l~~~-~---~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEe 218 (652)
T KOG2376|consen 151 NLLAVAAA-------LQVQ-L---LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEE 218 (652)
T ss_pred HHHHHHHh-------hhHH-H---HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhh
Confidence 11111111 0010 1 11111122 112222 22234455666666666665511 000
Q ss_pred -CCCh-hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH----HHHH-----------------------------
Q 047648 291 -AAGV-VTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVT----SNAL----------------------------- 335 (537)
Q Consensus 291 -~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~l----------------------------- 335 (537)
.... ..-..+...+-..|+.++|..++...++.. ++|... -|.+
T Consensus 219 ie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~ 297 (652)
T KOG2376|consen 219 IEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFL 297 (652)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHH
Confidence 0000 011223334445666666666666665543 222211 1111
Q ss_pred ------------------HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH--hcCChHHHHHHHHHHHhCCC
Q 047648 336 ------------------INGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYC--KEGRMEDAFAMRNSMLDRGV 395 (537)
Q Consensus 336 ------------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~ 395 (537)
+..|. +..+.+.++-.... +..|. ..+..++.... +...+..|.+++...-+..+
T Consensus 298 l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p 372 (652)
T KOG2376|consen 298 LSKLSKKQKQAIYRNNALLALFT--NKMDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHP 372 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCC
Confidence 11111 11112222111111 11222 23333333322 23357778888887777655
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcC
Q 047648 396 LPDVSTYNCLIAGLSREGNVEGVRNIMN--------ELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEK 467 (537)
Q Consensus 396 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 467 (537)
.-...+....++.....|+++.|.+++. .+.+.+.. +.+...+...+.+.++-+.|..++.+++......
T Consensus 373 ~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~ 450 (652)
T KOG2376|consen 373 EKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQ 450 (652)
T ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 5345677788888899999999999999 55554433 4566677788888888888888888887633222
Q ss_pred CCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 047648 468 KWPNIV----TYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMMEKG 521 (537)
Q Consensus 468 ~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 521 (537)
.+... ++..+...-.+.|+-++|..+++++.+.. .+|..+...++.+|++..
T Consensus 451 -~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 451 -QTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLD 506 (652)
T ss_pred -cccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcC
Confidence 12222 33334444466899999999999999843 357788888888888754
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.32 E-value=1e-07 Score=90.47 Aligned_cols=425 Identities=15% Similarity=0.117 Sum_probs=276.9
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhhC
Q 047648 66 TGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDY 145 (537)
Q Consensus 66 ~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 145 (537)
|-.++..| ..+++....++++..++. . +..+.+.....-.+...|+-++|.+..+...+.
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k-~------------------~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~ 70 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKK-F------------------PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN 70 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHh-C------------------CccchhHHhccchhhcccchHHHHHHHHHHhcc
Confidence 33344433 455666666766666653 1 333344555555667789999999999988876
Q ss_pred CCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHH
Q 047648 146 GLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYN 225 (537)
Q Consensus 146 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 225 (537)
. ..+.+.|..+.-.+....++++|.+.|......+.. |...+.-+.-.-++.|+++.......++.+.. +.....|.
T Consensus 71 d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~ 147 (700)
T KOG1156|consen 71 D-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWI 147 (700)
T ss_pred C-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHH
Confidence 5 347788988888888889999999999999987643 77888888888889999999998888888763 22455677
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHH------HHHhccCCHHHHHHHHHHHHhCCCCCChhh-H
Q 047648 226 ILIDGYCKKGGIGKMYKADAVFKDMVENG-ILPNEVTFNTLI------DGFCKDENISAAMKVFEEMGSHGIAAGVVT-Y 297 (537)
Q Consensus 226 ~ll~~~~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~ 297 (537)
.+.-++.- .|+...|..++++..+.. -.|+...|.... ....+.|.+++|.+.+..-... + .|-.. -
T Consensus 148 ~~Avs~~L---~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i-~Dkla~~ 222 (700)
T KOG1156|consen 148 GFAVAQHL---LGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-I-VDKLAFE 222 (700)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-H-HHHHHHh
Confidence 77777766 799999999999988764 346666654332 3445678888888887766543 1 12222 2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCHHHHH-HHHHHHHHcCCCCCHhHHHHHHHHHH
Q 047648 298 NSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFC-KKKLVEKAR-VLFDDISEQGLSPSVITYNTLIDAYC 375 (537)
Q Consensus 298 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~ 375 (537)
.+-...+.+.+++++|..++..+... .||..-|...+..+. +..+..++. .+|....+.-.. ...-..+--...
T Consensus 223 e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r--~e~p~Rlplsvl 298 (700)
T KOG1156|consen 223 ETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR--HECPRRLPLSVL 298 (700)
T ss_pred hhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc--cccchhccHHHh
Confidence 34456778999999999999999987 477666655544443 344444444 677766554211 111111111111
Q ss_pred hcCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CC----------CCCChHHH--H
Q 047648 376 KEGR-MEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVN----NG----------MRAGLVTY--N 438 (537)
Q Consensus 376 ~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~----------~~~~~~~~--~ 438 (537)
.... .+..-+++..+.+.|+++ ++..+...|-.....+-..++.-.+.. .| -+|....| -
T Consensus 299 ~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y 375 (700)
T KOG1156|consen 299 NGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLY 375 (700)
T ss_pred CcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHH
Confidence 2222 333445666777777654 233333333322222211111111111 11 14555444 4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHchhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 047648 439 ILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPN-IVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEM 517 (537)
Q Consensus 439 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 517 (537)
.+++.|-+.|+++.|...++.+++ ..|+ +..|..=.+.+...|++++|..++++..+.+ .||...-.....-+
T Consensus 376 ~laqh~D~~g~~~~A~~yId~AId-----HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYm 449 (700)
T KOG1156|consen 376 FLAQHYDKLGDYEVALEYIDLAID-----HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYM 449 (700)
T ss_pred HHHHHHHHcccHHHHHHHHHHHhc-----cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHH
Confidence 567888999999999999999985 2343 4556666788999999999999999999864 34555555777888
Q ss_pred HhcCCcCCccCCCC
Q 047648 518 MEKGFIPDIEGHMY 531 (537)
Q Consensus 518 ~~~g~~~~a~~~l~ 531 (537)
.+++.+++|+.++.
T Consensus 450 LrAn~i~eA~~~~s 463 (700)
T KOG1156|consen 450 LRANEIEEAEEVLS 463 (700)
T ss_pred HHccccHHHHHHHH
Confidence 88888888866543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.9e-08 Score=83.82 Aligned_cols=408 Identities=10% Similarity=0.069 Sum_probs=231.5
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCh------HH-----HHHHhhhcc
Q 047648 41 ADPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSV------ST-----IFHALSTCS 109 (537)
Q Consensus 41 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~------~~-----~~~~~~~~~ 109 (537)
.+...|..++++... .+......+-.++.+++.+.|++++|...+.-+....+.+.- .. .+....+..
T Consensus 36 rDytGAislLefk~~-~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~ 114 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLN-LDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIA 114 (557)
T ss_pred ccchhHHHHHHHhhc-cchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHH
Confidence 356667766666653 233334456677778888888888887777665543111110 00 011111111
Q ss_pred CCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHH
Q 047648 110 DSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSF 189 (537)
Q Consensus 110 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 189 (537)
...+.++-.-..+...-.+.++-++-..+.+.+.+. ..---++.......-.+++|.++|..+...+ |+-...
T Consensus 115 ~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~al 187 (557)
T KOG3785|consen 115 EKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIAL 187 (557)
T ss_pred hhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhh
Confidence 111334444444555555566666655555544431 1222334444444446778888888877652 333344
Q ss_pred HH-HHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCH----------------------------
Q 047648 190 NF-VLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKM---------------------------- 240 (537)
Q Consensus 190 ~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~---------------------------- 240 (537)
|. +.-+|.+..-++-+.+++.-..+. ++-+....|.......+.- .|+.
T Consensus 188 NVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~-ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLV 265 (557)
T KOG3785|consen 188 NVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLI-NGRTAEDEKKELADNIDQEYPFIEYLCRHNLV 265 (557)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhh-ccchhHHHHHHHHhcccccchhHHHHHHcCeE
Confidence 43 334566677777777777766654 1222333343333333210 1211
Q ss_pred -----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCC-------
Q 047648 241 -----YKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDG------- 308 (537)
Q Consensus 241 -----~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------- 308 (537)
+.|++++-.+.+. -+.+-..|+-.|.+.+++.+|..+.+++.-. .|-......+. +...|
T Consensus 266 vFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv--~aalGQe~gSre 337 (557)
T KOG3785|consen 266 VFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVV--FAALGQETGSRE 337 (557)
T ss_pred EEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHH--HHHhhhhcCcHH
Confidence 1222222222211 1233455666788999999999988776421 22222222222 22333
Q ss_pred CHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHH
Q 047648 309 KLDEAVALRDEMMASGLKPNVV-TSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMR 387 (537)
Q Consensus 309 ~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 387 (537)
...-|.+.|.-.-.++..-|+. --.++..++.-..++++++..+..+...-...|...+ .+..+++..|.+.+|.++|
T Consensus 338 HlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf 416 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELF 416 (557)
T ss_pred HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHH
Confidence 3556666666655555443332 2344555566667889999998888776444344444 4789999999999999999
Q ss_pred HHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHhcCChHHHHHHHHHHHHchh
Q 047648 388 NSMLDRGVLPDVSTYN-CLIAGLSREGNVEGVRNIMNELVNNGMRAGL-VTYNILVGALCKDGKSKKAVSLLDEMFKMEK 465 (537)
Q Consensus 388 ~~~~~~~~~p~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 465 (537)
-++....++ |..+|. .+.++|.+.+.++.|+.++-++-. +.+. .....+..-|.+++.+--|-+.|+.+..
T Consensus 417 ~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--- 489 (557)
T KOG3785|consen 417 IRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--- 489 (557)
T ss_pred hhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc---
Confidence 988876666 555665 556788899999999887755432 2233 3344556778899998888888887743
Q ss_pred cCCCCCHHHHH
Q 047648 466 EKKWPNIVTYN 476 (537)
Q Consensus 466 ~~~~~~~~~~~ 476 (537)
..|++..|.
T Consensus 490 --lDP~pEnWe 498 (557)
T KOG3785|consen 490 --LDPTPENWE 498 (557)
T ss_pred --cCCCccccC
Confidence 357777665
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.6e-08 Score=89.06 Aligned_cols=410 Identities=12% Similarity=0.054 Sum_probs=252.5
Q ss_pred HHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCC
Q 047648 71 HSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSS 150 (537)
Q Consensus 71 ~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 150 (537)
++....|+++.|..++...+.. .|+|-+.|..-..+|...|++.+|++=-.+.++.+ |.-
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l-------------------~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w 69 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIML-------------------SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDW 69 (539)
T ss_pred HhhcccccHHHHHHHHHHHHcc-------------------CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-Cch
Confidence 4455667777777777666544 26688999999999999999999999888888764 234
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHhCC---CCCChhhH
Q 047648 151 VLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAG---KLNKASDIMEDMKSLG---VSPKVVTY 224 (537)
Q Consensus 151 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~---~~~~~~~~ 224 (537)
...|.....++.-.|++++|...|.+-++.... |...++.+..++.... +.-.--.++..+.... .......|
T Consensus 70 ~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~ 148 (539)
T KOG0548|consen 70 AKGYSRKGAALFGLGDYEEAILAYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAY 148 (539)
T ss_pred hhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHH
Confidence 668999999999999999999999998887432 5556666776662110 0000001111111100 00122233
Q ss_pred HHHHHHHhcCCC----CCCHHHHHHHHHHHHH--------CC-------CCC----------------------CHHHHH
Q 047648 225 NILIDGYCKKGG----IGKMYKADAVFKDMVE--------NG-------ILP----------------------NEVTFN 263 (537)
Q Consensus 225 ~~ll~~~~~~~~----~~~~~~a~~~~~~~~~--------~~-------~~p----------------------~~~~~~ 263 (537)
..++..+-+... ..+.....+..-.+.. .| ..| -..-..
T Consensus 149 ~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek 228 (539)
T KOG0548|consen 149 VKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEK 228 (539)
T ss_pred HHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHH
Confidence 334433322100 0001111111111100 00 001 011234
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH-------HH
Q 047648 264 TLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNA-------LI 336 (537)
Q Consensus 264 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-------ll 336 (537)
.+..+..+..+++.|.+.+....... .+..-++....+|...|.+......-....+.|. ....-|+. +.
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHhh
Confidence 56666777778888888888777653 3444555566677777777777766666665542 11222222 33
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 047648 337 NGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVE 416 (537)
Q Consensus 337 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 416 (537)
.+|.+.++++.+...|.+.......|+. ..+....+++........-.++.. ..-...-...+.+.|++.
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~ 375 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYP 375 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHH
Confidence 3555566777777777776544222221 222333444554444443333221 222233366778899999
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047648 417 GVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLN 496 (537)
Q Consensus 417 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 496 (537)
.|+..|.++++.. |.|...|..-.-+|.+.|.+..|++-.+..+++. ++....|..=..++....+|+.|.+.|+
T Consensus 376 ~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~----p~~~kgy~RKg~al~~mk~ydkAleay~ 450 (539)
T KOG0548|consen 376 EAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD----PNFIKAYLRKGAALRAMKEYDKALEAYQ 450 (539)
T ss_pred HHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999986 7788999999999999999999999999888753 3445556666667777889999999999
Q ss_pred HHHHcCCCCCHHhHHHHHHHHHhcC
Q 047648 497 ELLEKGLIPNQTTYQIVREEMMEKG 521 (537)
Q Consensus 497 ~~~~~g~~p~~~~~~~l~~~~~~~g 521 (537)
+.++ ..|+..-+..-+.-|..+.
T Consensus 451 eale--~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 451 EALE--LDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHh--cCchhHHHHHHHHHHHHHh
Confidence 9998 4488777766666666653
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.9e-11 Score=78.31 Aligned_cols=50 Identities=40% Similarity=0.848 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 047648 470 PNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMME 519 (537)
Q Consensus 470 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 519 (537)
||..+|++++.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999999875
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.5e-07 Score=89.61 Aligned_cols=370 Identities=14% Similarity=0.094 Sum_probs=215.0
Q ss_pred CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh-hHH
Q 047648 147 LKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVV-TYN 225 (537)
Q Consensus 147 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~ 225 (537)
+..+...|..+.-++...|+++.+-+.|++...--+. ....|+.+...|...|.-..|..+++.-......|+.. .+-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4446666666666777777777777777665543222 55566666666777777666776666554432223322 232
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHC--CC--CCCHHHHHHHHHHHhcc-----------CCHHHHHHHHHHHHhCCC
Q 047648 226 ILIDGYCKKGGIGKMYKADAVFKDMVEN--GI--LPNEVTFNTLIDGFCKD-----------ENISAAMKVFEEMGSHGI 290 (537)
Q Consensus 226 ~ll~~~~~~~~~~~~~~a~~~~~~~~~~--~~--~p~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~~ 290 (537)
..-..|.+. .+..++++++-.+.... +. ......|..+.-+|... ....++++.+++..+.+.
T Consensus 398 masklc~e~--l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 398 MASKLCIER--LKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHhc--hhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 233333332 45555555555554441 10 11223333333333321 123455556666655432
Q ss_pred CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC-------
Q 047648 291 AAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQ-GLSP------- 362 (537)
Q Consensus 291 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~------- 362 (537)
. |+.....+.--|+..++.+.|.+...+..+-+-..+...|..+.-.+...+++.+|+.+.+...+. |...
T Consensus 476 ~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~ 554 (799)
T KOG4162|consen 476 T-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKI 554 (799)
T ss_pred C-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhh
Confidence 2 222222333345566667777777777666544556666666666666667777777666655432 1100
Q ss_pred -----------CHhHHHHHHHHHH-----------------------hcCChHHHHHHHHHHH--------hCC------
Q 047648 363 -----------SVITYNTLIDAYC-----------------------KEGRMEDAFAMRNSML--------DRG------ 394 (537)
Q Consensus 363 -----------~~~~~~~l~~~~~-----------------------~~g~~~~A~~~~~~~~--------~~~------ 394 (537)
...+...++...- ..++..+|.+....+. ..+
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp 634 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLP 634 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccC
Confidence 0001111111110 0001111111111110 001
Q ss_pred -----CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047648 395 -----VLPD------VSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKM 463 (537)
Q Consensus 395 -----~~p~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 463 (537)
..|+ ...|......+.+.++.+++...+.+..... +.....|......+...|..++|.+.|..+..+
T Consensus 635 ~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l 713 (799)
T KOG4162|consen 635 SSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL 713 (799)
T ss_pred cccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence 1122 1245556667778888899988888887764 566788888888999999999999999999876
Q ss_pred hhcCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCC-CHHhHHHHHHHHHhcCCcCCcc
Q 047648 464 EKEKKWPNIVTYNVLIKGFCQKGKLEDANG--LLNELLEKGLIP-NQTTYQIVREEMMEKGFIPDIE 527 (537)
Q Consensus 464 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~ 527 (537)
++ -++.+..++...+.+.|+..-|.. ++..+++.+ | +...|..+...+.+.|+.++|.
T Consensus 714 dP----~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d--p~n~eaW~~LG~v~k~~Gd~~~Aa 774 (799)
T KOG4162|consen 714 DP----DHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD--PLNHEAWYYLGEVFKKLGDSKQAA 774 (799)
T ss_pred CC----CCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHccchHHHH
Confidence 53 356678899999999998888887 999999954 5 6789999999999999988773
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.2e-08 Score=93.63 Aligned_cols=229 Identities=13% Similarity=-0.031 Sum_probs=121.7
Q ss_pred CHHHHHHHHHHHHhCC-CCC--ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047648 274 NISAAMKVFEEMGSHG-IAA--GVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARV 350 (537)
Q Consensus 274 ~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 350 (537)
..+.++.-+.++.... ..| ....|..+...+...|++++|...|.+..+.. +.+...|+.+...+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4445555555554321 111 12345555556666666666666666666643 3345666666666777777777777
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 047648 351 LFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGM 430 (537)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 430 (537)
.|++..+..+. +...|..+..++...|++++|.+.++...+..+. ++. .......+...++.++|...+++.....
T Consensus 120 ~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~~-~~~~~~l~~~~~~~~~A~~~l~~~~~~~- 195 (296)
T PRK11189 120 AFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DPY-RALWLYLAESKLDPKQAKENLKQRYEKL- 195 (296)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHccCCHHHHHHHHHHHHhhC-
Confidence 77766665433 4455666666666677777777777776665433 221 1111122334566777777775544322
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 047648 431 RAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEK---KWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQ 507 (537)
Q Consensus 431 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 507 (537)
.|+...+ .......|+...+ +.++.+.+-.... .+.....|..+...+...|++++|+..|++.++.+ .||.
T Consensus 196 ~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~ 270 (296)
T PRK11189 196 DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNF 270 (296)
T ss_pred CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchH
Confidence 2222111 1222334444333 2333333100000 01134567777778888888888888888887743 2354
Q ss_pred HhHHH
Q 047648 508 TTYQI 512 (537)
Q Consensus 508 ~~~~~ 512 (537)
.-+..
T Consensus 271 ~e~~~ 275 (296)
T PRK11189 271 VEHRY 275 (296)
T ss_pred HHHHH
Confidence 44444
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.7e-11 Score=77.60 Aligned_cols=49 Identities=41% Similarity=0.862 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHh
Q 047648 184 LNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYC 232 (537)
Q Consensus 184 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 232 (537)
||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++++++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444444444444444444444444444444444444444444444443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.3e-09 Score=86.93 Aligned_cols=210 Identities=14% Similarity=0.061 Sum_probs=162.3
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 047648 295 VTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAY 374 (537)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 374 (537)
.+...+...|.+.|++..|..-+++.++.. +-+..++..+...|.+.|+.+.|.+.|++.....+. +-.+.|.....+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHH
Confidence 345566778888999999999998888864 445677888888888899999999999888877544 667788888888
Q ss_pred HhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHH
Q 047648 375 CKEGRMEDAFAMRNSMLDRGVLP-DVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKA 453 (537)
Q Consensus 375 ~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 453 (537)
|..|++++|...|++.......+ -..+|..+.-+..+.|+++.|...|++.++.. +..+.+...+.....+.|++-.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHH
Confidence 88889999999888888653222 24578888888888899999999998888875 44566777888888888999999
Q ss_pred HHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 047648 454 VSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIV 513 (537)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 513 (537)
...++.... +..++..+.-..|+.-.+.|+.+.+-+.=.++.. ..|...-+...
T Consensus 193 r~~~~~~~~----~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r--~fP~s~e~q~f 246 (250)
T COG3063 193 RLYLERYQQ----RGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR--LFPYSEEYQTF 246 (250)
T ss_pred HHHHHHHHh----cccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCcHHHHhH
Confidence 888888753 3347777777778888888888888887777766 45666655543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.3e-08 Score=84.02 Aligned_cols=393 Identities=15% Similarity=0.090 Sum_probs=238.1
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhhC
Q 047648 66 TGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDY 145 (537)
Q Consensus 66 ~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 145 (537)
+.+.+.-+.+..++.++.+++....++. +.+....+.+..+|....++..|-+.|+.+...
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-------------------p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql 73 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-------------------PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL 73 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556667778888999998888777662 456677888999999999999999999999875
Q ss_pred CCCCChhhHHH-HHHHHHhCCChhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh
Q 047648 146 GLKSSVLSCNQ-LLRALVKEGKFEDVEYVYKEMKRRRIELNLD--SFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVV 222 (537)
Q Consensus 146 ~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 222 (537)
-|...-|.. -...+.+.+.+.+|+.+...|... ++.. ....-.......+++..+..++++....| +..
T Consensus 74 --~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad 145 (459)
T KOG4340|consen 74 --HPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EAD 145 (459)
T ss_pred --ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccc
Confidence 344443332 345777889999999999888753 1211 11111122335788889999988876433 444
Q ss_pred hHHHHHHHHhcCCCCCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC---------
Q 047648 223 TYNILIDGYCKKGGIGKMYKADAVFKDMVEN-GILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAA--------- 292 (537)
Q Consensus 223 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--------- 292 (537)
+.+.......+ .|+++.|.+-|+...+- |.. ....|+..+. ..+.|+++.|+++..++.++|+..
T Consensus 146 ~~in~gCllyk---egqyEaAvqkFqaAlqvsGyq-pllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~ 220 (459)
T KOG4340|consen 146 GQINLGCLLYK---EGQYEAAVQKFQAALQVSGYQ-PLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMT 220 (459)
T ss_pred hhccchheeec---cccHHHHHHHHHHHHhhcCCC-chhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccce
Confidence 44444444455 79999999999988765 444 4566765554 456789999999999988876431
Q ss_pred ----Chh---------------hHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047648 293 ----GVV---------------TYNSLINGLCVDGKLDEAVALRDEMMAS-GLKPNVVTSNALINGFCKKKLVEKARVLF 352 (537)
Q Consensus 293 ----~~~---------------~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 352 (537)
|+. .+|.-...+.+.++++.|.+.+-+|.-+ ....|++|...+.-.- ..+++....+-+
T Consensus 221 tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KL 299 (459)
T KOG4340|consen 221 TEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKL 299 (459)
T ss_pred eccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHH
Confidence 111 1222233456788888888888877543 2244667765543222 234455555556
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 047648 353 DDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGV-LPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMR 431 (537)
Q Consensus 353 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 431 (537)
.-+.+.++- ...||..++-.||++.-++-|-+++.+-..... ..+...|+.+=......-..+++.+-++.+...- .
T Consensus 300 qFLL~~nPf-P~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l-~ 377 (459)
T KOG4340|consen 300 QFLLQQNPF-PPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGML-T 377 (459)
T ss_pred HHHHhcCCC-ChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-H
Confidence 666666553 566888888899999888888887765332211 1123333333222233445566665555443320 0
Q ss_pred CChHHHHHHHHHHHhcCC---hHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 432 AGLVTYNILVGALCKDGK---SKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 432 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
.......+-++--...++ ...|++-+++.+++ -..+..+....|.+..++..+.++|+.-.+
T Consensus 378 ~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~-------YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 378 EKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEK-------YLPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 000111111111111222 22233333333321 111223344557778899999999988776
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.2e-07 Score=79.55 Aligned_cols=289 Identities=11% Similarity=0.037 Sum_probs=206.9
Q ss_pred CCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh-hHHHHHHHHhcCCCCCCHH
Q 047648 164 EGKFEDVEYVYKEMKRR-RIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVV-TYNILIDGYCKKGGIGKMY 241 (537)
Q Consensus 164 ~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~~~ 241 (537)
.++-..+...+-.+... -++-|+.....+..++...|+.++|...|++.... .|+.. ......-.+.+ .|+++
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~---eg~~e 283 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQ---EGGCE 283 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHh---ccCHh
Confidence 34444444433333222 25567888899999999999999999999998765 33322 22222222334 67787
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 047648 242 KADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMM 321 (537)
Q Consensus 242 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 321 (537)
....+...+.... .-....|..-+......+++..|+.+-++.++.+ +.+...|-.-...+...+++++|.-.|+...
T Consensus 284 ~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq 361 (564)
T KOG1174|consen 284 QDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQ 361 (564)
T ss_pred hHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHH
Confidence 7777777776542 1133344444455566789999999999888753 2244555555577889999999999999988
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHH-HHHHh-cCChHHHHHHHHHHHhCCCCCCH
Q 047648 322 ASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLI-DAYCK-EGRMEDAFAMRNSMLDRGVLPDV 399 (537)
Q Consensus 322 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~g~~~~A~~~~~~~~~~~~~p~~ 399 (537)
... +-+..+|..++++|...|.+.+|...-+...+. ...+..+...+. ..+.- ...-++|.++++..+...+. -.
T Consensus 362 ~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-Y~ 438 (564)
T KOG1174|consen 362 MLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI-YT 438 (564)
T ss_pred hcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-cH
Confidence 752 357789999999999999999998887776554 223566666553 33332 23357899999888875432 23
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHch
Q 047648 400 STYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKME 464 (537)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 464 (537)
...+.+...|...|..+.++.++++.... .||....+.|.+.+...+.+++|.+.|..+++++
T Consensus 439 ~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 439 PAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 45677788899999999999999999885 6899999999999999999999999999998643
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.9e-08 Score=82.16 Aligned_cols=198 Identities=14% Similarity=0.018 Sum_probs=144.7
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 047648 260 VTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGF 339 (537)
Q Consensus 260 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 339 (537)
.+...|.-.|...|++..|..-+++..+.. +.+..+|..+...|.+.|+.+.|.+.|++..+.. +-+..+.|.....+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 445666777888888888888888887764 2256677777888888888888888888887753 34556777777788
Q ss_pred HhcCCHHHHHHHHHHHHHcCC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047648 340 CKKKLVEKARVLFDDISEQGL-SPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGV 418 (537)
Q Consensus 340 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 418 (537)
|..|.+++|...|++....-. .--..+|..+.-+..+.|+++.|.+.|++.++..+. .+.+...+.+...+.|++-.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHH
Confidence 888888888888888776411 113456777777777888888888888888877554 455666777777788888888
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047648 419 RNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMF 461 (537)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 461 (537)
..+++.....+ .++..+.-..|..--..|+.+.+-+.=..+.
T Consensus 193 r~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 193 RLYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 88888777765 3777777777777777888777766655553
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.6e-09 Score=100.51 Aligned_cols=98 Identities=19% Similarity=0.115 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHhhC-----CC-CCChh-hHHHHHHHHHhCCChhHHHHHHHHHHhC-----C--
Q 047648 116 SIIIDMLMLAYVKNMKPHLGFEAFKRAGDY-----GL-KSSVL-SCNQLLRALVKEGKFEDVEYVYKEMKRR-----R-- 181 (537)
Q Consensus 116 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-- 181 (537)
..++..+...|...|+++.|..+++...+. |. -|.+. ..+.+...|...+++.+|..+|+++... |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 355555777777777777777777776654 10 12222 2333555666666666666666665432 1
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047648 182 IELNLDSFNFVLNGLCKAGKLNKASDIMEDMK 213 (537)
Q Consensus 182 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 213 (537)
.+.-..+++.|...|.+.|++++|...+++..
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al 310 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERAL 310 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence 11122245555566666666666666665543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.7e-07 Score=85.88 Aligned_cols=201 Identities=13% Similarity=0.075 Sum_probs=89.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCH--hHHHHHHHHHHh
Q 047648 300 LINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLS-PSV--ITYNTLIDAYCK 376 (537)
Q Consensus 300 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~ 376 (537)
+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.... |+. ..|..+...+..
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 3344455555555555555555532 223344445555555555555555555554443211 111 223345555555
Q ss_pred cCChHHHHHHHHHHHhCCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHH--HHHHHHCCC--CCChHHHHHHHHHHHhcC
Q 047648 377 EGRMEDAFAMRNSMLDRGV-LPDVSTY-N--CLIAGLSREGNVEGVRNI--MNELVNNGM--RAGLVTYNILVGALCKDG 448 (537)
Q Consensus 377 ~g~~~~A~~~~~~~~~~~~-~p~~~~~-~--~l~~~~~~~~~~~~a~~~--~~~~~~~~~--~~~~~~~~~l~~~~~~~g 448 (537)
.|++++|..++++...... .+..... + .++.-+...|....+.+. +........ ............++...|
T Consensus 199 ~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 278 (355)
T cd05804 199 RGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAG 278 (355)
T ss_pred CCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCC
Confidence 6666666666655543221 1111111 1 112222223322222221 111100000 011112224555666777
Q ss_pred ChHHHHHHHHHHHHchhc----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 449 KSKKAVSLLDEMFKMEKE----KK-WPNIVTYNVLIKGFCQKGKLEDANGLLNELLEK 501 (537)
Q Consensus 449 ~~~~A~~~~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (537)
+.++|..+++.+...... +. ...+........++...|++++|.+.+.+.+..
T Consensus 279 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 279 DKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 777777777776542222 00 011222233334556788888888888877654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.2e-08 Score=88.18 Aligned_cols=197 Identities=16% Similarity=0.025 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047648 116 SIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNG 195 (537)
Q Consensus 116 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 195 (537)
...|..+...|...|++++|...|++..+.. +.+..+|+.+...+...|++++|...|+...+..+. +..++..+..+
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~ 141 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3556777788888899999999998888865 446778888888888999999999999888876433 56677778888
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 047648 196 LCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENI 275 (537)
Q Consensus 196 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 275 (537)
+...|++++|.+.|++..+.. |+..........+.. .++.++|...+.+..... .|+...+ .+... ..|+.
T Consensus 142 l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~---~~~~~~A~~~l~~~~~~~-~~~~~~~-~~~~~--~lg~~ 212 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAES---KLDPKQAKENLKQRYEKL-DKEQWGW-NIVEF--YLGKI 212 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHc---cCCHHHHHHHHHHHHhhC-CccccHH-HHHHH--HccCC
Confidence 888899999999988888763 443322222222223 567888888886655332 2332222 22222 23444
Q ss_pred HHHHHHHHHHHhC---CC---CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 047648 276 SAAMKVFEEMGSH---GI---AAGVVTYNSLINGLCVDGKLDEAVALRDEMMASG 324 (537)
Q Consensus 276 ~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 324 (537)
..+ +.+..+.+. .+ +.....|..+...+.+.|++++|+..|++....+
T Consensus 213 ~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 213 SEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 333 233333321 11 1123467777777888888888888888877654
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.1e-06 Score=79.01 Aligned_cols=415 Identities=14% Similarity=0.105 Sum_probs=241.6
Q ss_pred CCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHH
Q 047648 39 SDADPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSII 118 (537)
Q Consensus 39 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (537)
...+.+.|......++.. .|.+..++..=+-++...+.|++|..+++..... .. .+...
T Consensus 24 ~~~e~e~a~k~~~Kil~~--~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~---~~----------------~~~~~ 82 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSI--VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL---LV----------------INSFF 82 (652)
T ss_pred cchHHHHHHHHHHHHHhc--CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh---hh----------------cchhh
Confidence 445677788888888765 4667777777777888889999999776643321 00 00000
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH-HH
Q 047648 119 IDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNG-LC 197 (537)
Q Consensus 119 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 197 (537)
| -=+-+..+.++.++|+..++...+ .+..+...-...+.+.|++++|..+|+.+.+.+.+ + +..-+++ +.
T Consensus 83 f-EKAYc~Yrlnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d---~d~~~r~nl~ 153 (652)
T KOG2376|consen 83 F-EKAYCEYRLNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-D---QDEERRANLL 153 (652)
T ss_pred H-HHHHHHHHcccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-h---HHHHHHHHHH
Confidence 1 113456678999999999984332 24446666678889999999999999999887543 2 2211111 11
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCC-------CCCCH-------HHHH
Q 047648 198 KAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENG-------ILPNE-------VTFN 263 (537)
Q Consensus 198 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~-------~~p~~-------~~~~ 263 (537)
..+-.-.+. +.+ .....| ..+|..+.+..|..-..|++.+|++++......+ -.-+. ..-.
T Consensus 154 a~~a~l~~~-~~q---~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~Irv 228 (652)
T KOG2376|consen 154 AVAAALQVQ-LLQ---SVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRV 228 (652)
T ss_pred HHHHhhhHH-HHH---hccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHH
Confidence 111111111 222 222222 4456555554444333789999999888873211 11000 1123
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhH----HHHHHHHHhCCCHH-------------HHHHHHHHHH-----
Q 047648 264 TLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTY----NSLINGLCVDGKLD-------------EAVALRDEMM----- 321 (537)
Q Consensus 264 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~-------------~A~~~~~~~~----- 321 (537)
.+...+...|+.++|..+|...++... +|.... |.++..-....-++ -+..+...+.
T Consensus 229 QlayVlQ~~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~ 307 (652)
T KOG2376|consen 229 QLAYVLQLQGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQ 307 (652)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344566678999999999988887643 233221 12211111000000 0000000000
Q ss_pred -----------------------Hc--CCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 047648 322 -----------------------AS--GLKPNVVTSNALINGFCK--KKLVEKARVLFDDISEQGLSPSVITYNTLIDAY 374 (537)
Q Consensus 322 -----------------------~~--~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 374 (537)
.. +..|. ..+..++..+.+ ...+..+..++....+..+.-...+.-.++...
T Consensus 308 ~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~ 386 (652)
T KOG2376|consen 308 AIYRNNALLALFTNKMDQVRELSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLK 386 (652)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHH
Confidence 00 11222 333444433332 224677777777776665444455666777788
Q ss_pred HhcCChHHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCChH----HHHHH
Q 047648 375 CKEGRMEDAFAMRN--------SMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNN--GMRAGLV----TYNIL 440 (537)
Q Consensus 375 ~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~----~~~~l 440 (537)
...|+++.|.+++. .+.+.+.. +.+-..+...+.+.++.+.|..++.+.++. ...+... ++.-+
T Consensus 387 is~gn~~~A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~a 464 (652)
T KOG2376|consen 387 ISQGNPEVALEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREA 464 (652)
T ss_pred HhcCCHHHHHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHH
Confidence 89999999999999 55554444 345566677778888877787777776643 1112222 33334
Q ss_pred HHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047648 441 VGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNE 497 (537)
Q Consensus 441 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 497 (537)
...-.+.|+-++|..+++++.+. .++|..+...++.+|++. +++.|..+-+.
T Consensus 465 a~f~lr~G~~~ea~s~leel~k~----n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 465 AEFKLRHGNEEEASSLLEELVKF----NPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred hHHHHhcCchHHHHHHHHHHHHh----CCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 44556779999999999999853 367899999999998865 45666655444
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.3e-07 Score=84.44 Aligned_cols=201 Identities=9% Similarity=0.032 Sum_probs=112.8
Q ss_pred CchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChh---hHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHH
Q 047648 113 CRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVL---SCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSF 189 (537)
Q Consensus 113 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 189 (537)
|..+..+..+...+...|+.+.+.+.+.+..+.. +++.. ........+...|++++|...+++..+..+. +...+
T Consensus 3 p~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~ 80 (355)
T cd05804 3 PDFALGHAAAALLLLLGGERPAAAAKAAAAAQAL-AARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLAL 80 (355)
T ss_pred CccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHH
Confidence 3445566667777777788888777777665542 22211 1222233456677888888888877765322 33333
Q ss_pred HHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCh-hhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 047648 190 NFVLNGLCK----AGKLNKASDIMEDMKSLGVSPKV-VTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNT 264 (537)
Q Consensus 190 ~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 264 (537)
.. ...+.. .+..+.+.+.++.. .+..|+. .....+...+.. .|++++|...+++..+.. +.+...+..
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~---~G~~~~A~~~~~~al~~~-p~~~~~~~~ 153 (355)
T cd05804 81 KL-HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEE---AGQYDRAEEAARRALELN-PDDAWAVHA 153 (355)
T ss_pred HH-hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhC-CCCcHHHHH
Confidence 32 222222 33444444444431 1112222 222333445555 677777777777777653 224556666
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCC-CCCh--hhHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 047648 265 LIDGFCKDENISAAMKVFEEMGSHGI-AAGV--VTYNSLINGLCVDGKLDEAVALRDEMMA 322 (537)
Q Consensus 265 l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 322 (537)
+...+...|++++|...+++...... .++. ..|..+...+...|++++|..+++++..
T Consensus 154 la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 154 VAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 77777777777777777777665421 1121 2344566677777777777777777653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.7e-06 Score=93.68 Aligned_cols=377 Identities=11% Similarity=0.016 Sum_probs=228.7
Q ss_pred HHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 047648 121 MLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAG 200 (537)
Q Consensus 121 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 200 (537)
.....+...|++.+|+..+...... ..-..............|+++.+...++.+.......+..........+...|
T Consensus 346 raa~~~~~~g~~~~Al~~a~~a~d~--~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g 423 (903)
T PRK04841 346 AAAEAWLAQGFPSEAIHHALAAGDA--QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQH 423 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHCCCH--HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCC
Confidence 3344455566666555544333211 00011122223344556777777777766532111112333344555667889
Q ss_pred ChhHHHHHHHHHHhCCC------CCChh--hHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHH
Q 047648 201 KLNKASDIMEDMKSLGV------SPKVV--TYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNE----VTFNTLIDG 268 (537)
Q Consensus 201 ~~~~a~~~~~~~~~~~~------~~~~~--~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~ 268 (537)
+++++...++.....-- .+... ....+...+.. .|++++|...+++....-...+. ...+.+...
T Consensus 424 ~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 424 RYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN---DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred CHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 99999999988754310 11111 11222233344 79999999999987763111121 234556667
Q ss_pred HhccCCHHHHHHHHHHHHhC----CC-CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHH
Q 047648 269 FCKDENISAAMKVFEEMGSH----GI-AAGVVTYNSLINGLCVDGKLDEAVALRDEMMAS----GLK--P-NVVTSNALI 336 (537)
Q Consensus 269 ~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~ll 336 (537)
+...|++++|...+++.... |. .....++..+...+...|+++.|...+++.... +.. + ....+..+.
T Consensus 501 ~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la 580 (903)
T PRK04841 501 HHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA 580 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 78899999999999887642 11 111234455667788999999999998887652 211 1 223344556
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc----CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHH--H--HHHH
Q 047648 337 NGFCKKKLVEKARVLFDDISEQ----GLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRG--VLPDVST--Y--NCLI 406 (537)
Q Consensus 337 ~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~--~--~~l~ 406 (537)
..+...|++++|...+.+.... +.......+..+...+...|+++.|...++...... ....... . ...+
T Consensus 581 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~ 660 (903)
T PRK04841 581 QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRL 660 (903)
T ss_pred HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHH
Confidence 6677789999999999887543 111123345556677889999999999998875421 1111111 0 1122
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC---hHHHHHHHHHHHhcCChHHHHHHHHHHHHchhc-CCCC-CHHHHHHHHHH
Q 047648 407 AGLSREGNVEGVRNIMNELVNNGMRAG---LVTYNILVGALCKDGKSKKAVSLLDEMFKMEKE-KKWP-NIVTYNVLIKG 481 (537)
Q Consensus 407 ~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~-~~~~~~~l~~~ 481 (537)
..+...|+.+.|...+........... ...+..+..++...|++++|...++++...... +..+ ...+...+..+
T Consensus 661 ~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a 740 (903)
T PRK04841 661 IYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQL 740 (903)
T ss_pred HHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 444568899999999877654321111 112456777889999999999999998764322 2222 23456677788
Q ss_pred HHhcCCHHHHHHHHHHHHHcC
Q 047648 482 FCQKGKLEDANGLLNELLEKG 502 (537)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~g 502 (537)
+.+.|+.++|...+.+.++..
T Consensus 741 ~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 741 YWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999999998753
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.6e-07 Score=79.32 Aligned_cols=330 Identities=12% Similarity=0.109 Sum_probs=213.7
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHH-HHHHHHH
Q 047648 119 IDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFN-FVLNGLC 197 (537)
Q Consensus 119 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~ 197 (537)
+++++..+.+..++..|++++..-.+.. +.+......+..+|....++..|-..|+++-.. .|...-|. .-...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 5677777888999999999999888764 347778888899999999999999999999876 44554443 2355677
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 047648 198 KAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISA 277 (537)
Q Consensus 198 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 277 (537)
+.+.+.+|+.+...|... |+...-..-+.+..+.. .+++..+..++++....| +..+.+...-...+.|+++.
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYs-e~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYS-EGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcc-cccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence 889999999999988753 23333233333333322 577778888888776432 44555555556678999999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH---------------------HHHHHH
Q 047648 278 AMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVV---------------------TSNALI 336 (537)
Q Consensus 278 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---------------------~~~~ll 336 (537)
|.+-|+...+-+--.....|+.. -++.+.++++.|++...+++++|++..+. .-+.++
T Consensus 163 AvqkFqaAlqvsGyqpllAYniA-LaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLA-LAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHH-HHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 99999998875433355666654 46678999999999999999887532110 112222
Q ss_pred H-------HHHhcCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047648 337 N-------GFCKKKLVEKARVLFDDISEQ-GLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAG 408 (537)
Q Consensus 337 ~-------~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 408 (537)
. .+.+.++++.|.+.+-.|.-+ ....|+.|...+.-. --.+++.+..+-+.-++..++. ...||..++-.
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf-P~ETFANlLll 319 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF-PPETFANLLLL 319 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC-ChHHHHHHHHH
Confidence 2 234567777777777666322 223355554433221 1244555556666666666554 45677777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC-CCChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047648 409 LSREGNVEGVRNIMNELVNNGM-RAGLVTYNILVGALCKDGKSKKAVSLLDEMF 461 (537)
Q Consensus 409 ~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 461 (537)
|++..-++.|-.++.+-..... -.+...|+.|=......-.+++|.+-++..-
T Consensus 320 yCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred HhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 8888778877777764322111 1223344433333334455677766666554
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=5e-06 Score=73.12 Aligned_cols=88 Identities=6% Similarity=-0.043 Sum_probs=45.6
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047648 269 FCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKA 348 (537)
Q Consensus 269 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 348 (537)
+...|+...|+.....+.+.. +-|...|..-..+|...|++..|+.-++...+.. ..++.++--+-..+...|+.+.+
T Consensus 165 ~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~s 242 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENS 242 (504)
T ss_pred HhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHH
Confidence 334555556666555555432 2244445555555666666666655554444432 23344444445555555666665
Q ss_pred HHHHHHHHHc
Q 047648 349 RVLFDDISEQ 358 (537)
Q Consensus 349 ~~~~~~~~~~ 358 (537)
+...++..+.
T Consensus 243 L~~iRECLKl 252 (504)
T KOG0624|consen 243 LKEIRECLKL 252 (504)
T ss_pred HHHHHHHHcc
Confidence 5555555553
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-05 Score=75.39 Aligned_cols=386 Identities=13% Similarity=0.018 Sum_probs=233.4
Q ss_pred hcCCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchH
Q 047648 37 FNSDADPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNS 116 (537)
Q Consensus 37 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 116 (537)
.-..++.+.|...|..++.. .|++...|+.-..++...++|++|.+=-..-++. .|.++
T Consensus 12 a~s~~d~~~ai~~~t~ai~l--~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l-------------------~p~w~ 70 (539)
T KOG0548|consen 12 AFSSGDFETAIRLFTEAIML--SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL-------------------NPDWA 70 (539)
T ss_pred hcccccHHHHHHHHHHHHcc--CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc-------------------CCchh
Confidence 34557888999999999887 5679999999999999999999987654444433 26778
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCCh---hHHHHHHHHHHhC---CCCCCHHHHH
Q 047648 117 IIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKF---EDVEYVYKEMKRR---RIELNLDSFN 190 (537)
Q Consensus 117 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~---~~~~~~~~~~ 190 (537)
..|.-...++.-.|++++|+..|.+-++.. +.+...++.+..+....... -.--.++..+... ........|.
T Consensus 71 kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~ 149 (539)
T KOG0548|consen 71 KGYSRKGAALFGLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYV 149 (539)
T ss_pred hHHHHhHHHHHhcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHH
Confidence 889999999999999999999999988864 34556667777666211100 0000111111100 0001112233
Q ss_pred HHHHHHHhc-------CChhHHHHHHHHH--------HhCC-------CCC---------C-------------hhhHHH
Q 047648 191 FVLNGLCKA-------GKLNKASDIMEDM--------KSLG-------VSP---------K-------------VVTYNI 226 (537)
Q Consensus 191 ~l~~~~~~~-------g~~~~a~~~~~~~--------~~~~-------~~~---------~-------------~~~~~~ 226 (537)
.++..+-+. .+.....+..-.+ ...| ..| . ..-...
T Consensus 150 ~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~ 229 (539)
T KOG0548|consen 150 KILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKE 229 (539)
T ss_pred HHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHH
Confidence 333322111 0111111111111 0001 111 0 111334
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHH-------
Q 047648 227 LIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNS------- 299 (537)
Q Consensus 227 ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~------- 299 (537)
+.++..+ ..++..|++.+....+.. -+..-++....+|...|.+.++........+.|-. ...-|+.
T Consensus 230 lgnaayk---kk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 230 LGNAAYK---KKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHH---hhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 5555555 577888888888877764 35666677778899999988888887777665422 2222333
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC
Q 047648 300 LINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGR 379 (537)
Q Consensus 300 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 379 (537)
+..+|.+.++++.++..|.+.+.....|+. ..+....+++........-.++.. ..-...-...+.+.|+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccC
Confidence 334566678899999999887765433332 223334444444444433322221 1112222555667788
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHH
Q 047648 380 MEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDE 459 (537)
Q Consensus 380 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 459 (537)
+..|+..+.+++...+. |...|....-+|.+.|.+..|+.-.+..++.+ ++....|..=..++....+++.|.+.|++
T Consensus 374 y~~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888777644 77778777778888888888777777776664 44455666666666667777788888877
Q ss_pred HHH
Q 047648 460 MFK 462 (537)
Q Consensus 460 ~~~ 462 (537)
.++
T Consensus 452 ale 454 (539)
T KOG0548|consen 452 ALE 454 (539)
T ss_pred HHh
Confidence 765
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.9e-08 Score=89.74 Aligned_cols=250 Identities=14% Similarity=0.141 Sum_probs=150.3
Q ss_pred HHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCC
Q 047648 160 ALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGK 239 (537)
Q Consensus 160 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 239 (537)
-..-.|++..++.-.+ ......+.+......+.+++...|+.+.++ .++.... .|.......+...+.. .++
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~---~~~ 81 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSS---PSD 81 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCT---STT
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhC---ccc
Confidence 3444677777665554 222222223444556677777888766543 3333322 4555555444433332 344
Q ss_pred HHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHH
Q 047648 240 MYKADAVFKDMVENGIL-PNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRD 318 (537)
Q Consensus 240 ~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 318 (537)
.+.++.-+++....+.. .+..........+...|++++|++++... .+.......+.+|.+.++++.|.+.++
T Consensus 82 ~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~ 155 (290)
T PF04733_consen 82 KESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELK 155 (290)
T ss_dssp HHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHH
Confidence 45555555444333322 23333333345666778888888877542 256666777888888888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 047648 319 EMMASGLKPNVVTSNALINGFC----KKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRG 394 (537)
Q Consensus 319 ~~~~~~~~~~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 394 (537)
.|.+.+ .| .+...+..++. ..+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+..+.+
T Consensus 156 ~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~ 231 (290)
T PF04733_consen 156 NMQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD 231 (290)
T ss_dssp HHHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-
T ss_pred HHHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence 887642 33 33444444433 334688888888887665 45677888888888888888888888888888766
Q ss_pred CCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHC
Q 047648 395 VLPDVSTYNCLIAGLSREGNV-EGVRNIMNELVNN 428 (537)
Q Consensus 395 ~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~ 428 (537)
.. ++.++..++.+....|+. +.+.+++.++...
T Consensus 232 ~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 232 PN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred cC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 55 677777777777777777 6677788777765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.3e-05 Score=70.55 Aligned_cols=320 Identities=11% Similarity=0.073 Sum_probs=186.9
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHH
Q 047648 60 SHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAF 139 (537)
Q Consensus 60 ~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 139 (537)
+.+..-+..+...+...|++.+|..-+...++. + |.+-.++---...|+..|+-..|+.-|
T Consensus 35 ~advekhlElGk~lla~~Q~sDALt~yHaAve~-d------------------p~~Y~aifrRaT~yLAmGksk~al~Dl 95 (504)
T KOG0624|consen 35 PADVEKHLELGKELLARGQLSDALTHYHAAVEG-D------------------PNNYQAIFRRATVYLAMGKSKAALQDL 95 (504)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC-C------------------chhHHHHHHHHHHHhhhcCCccchhhH
Confidence 344445566777777777777777766665543 2 122222223345788888888898888
Q ss_pred HHHhhCCCCCChhh-HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 047648 140 KRAGDYGLKSSVLS-CNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVS 218 (537)
Q Consensus 140 ~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 218 (537)
.++++. +||... -..-...+.++|+++.|..=|+.+++... +..+ ...++.+.--.++-..+.+++
T Consensus 96 ~rVlel--KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~--s~~~---~~eaqskl~~~~e~~~l~~ql------ 162 (504)
T KOG0624|consen 96 SRVLEL--KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEP--SNGL---VLEAQSKLALIQEHWVLVQQL------ 162 (504)
T ss_pred HHHHhc--CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCC--Ccch---hHHHHHHHHhHHHHHHHHHHH------
Confidence 888874 666543 23334567788999999988888887642 2211 112222222222222222111
Q ss_pred CChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHH
Q 047648 219 PKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYN 298 (537)
Q Consensus 219 ~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 298 (537)
. .+.- .|+...|+..+..+++.. +-|...|..-..+|...|++..|+.-+....+..- -+..++.
T Consensus 163 ---------~-s~~~---~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~y 227 (504)
T KOG0624|consen 163 ---------K-SASG---SGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHY 227 (504)
T ss_pred ---------H-HHhc---CCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHH
Confidence 1 2222 477777777777777642 33666677777777777777777776666655422 2445555
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH----H---------HHHHHhcCCHHHHHHHHHHHHHcCCCCCH-
Q 047648 299 SLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNA----L---------INGFCKKKLVEKARVLFDDISEQGLSPSV- 364 (537)
Q Consensus 299 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~----l---------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 364 (537)
-+-..+...|+.+.++...++.++. .||....-. + +......+++.++..-.+...+..+....
T Consensus 228 kis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~i 305 (504)
T KOG0624|consen 228 KISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMI 305 (504)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccce
Confidence 5566667777777777777777663 354322111 0 11223345566666666666655333112
Q ss_pred --hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047648 365 --ITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNG 429 (537)
Q Consensus 365 --~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 429 (537)
..+..+-.++...|++.+|+....++++..+. |+.++.--..+|.-...++.|+.-|+...+.+
T Consensus 306 r~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 306 RYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD-DVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred eeeeeheeeecccccCCHHHHHHHHHHHHhcCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 22344555566667777777777777664322 46666666777777777777777777776653
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-05 Score=79.03 Aligned_cols=388 Identities=12% Similarity=0.080 Sum_probs=227.8
Q ss_pred CCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHH
Q 047648 61 HSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFK 140 (537)
Q Consensus 61 ~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 140 (537)
.+..+|..|...|.+.++++-|.--+..|... ...+.+++..+.+ .+ .-.-+...-...|..++|..+|+
T Consensus 755 kS~~vW~nmA~McVkT~RLDVAkVClGhm~~a----RgaRAlR~a~q~~----~e--~eakvAvLAieLgMlEeA~~lYr 824 (1416)
T KOG3617|consen 755 KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNA----RGARALRRAQQNG----EE--DEAKVAVLAIELGMLEEALILYR 824 (1416)
T ss_pred hhhHHHHHHHHHhhhhccccHHHHhhhhhhhh----hhHHHHHHHHhCC----cc--hhhHHHHHHHHHhhHHHHHHHHH
Confidence 34567999999999999999998877766533 1222333333321 11 11223334466799999999999
Q ss_pred HHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 047648 141 RAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPK 220 (537)
Q Consensus 141 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 220 (537)
+..+. ..|=..|...|.+++|.++-+.--+. . =..||......+-..++.+.|++.|++...
T Consensus 825 ~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~------ 886 (1416)
T KOG3617|consen 825 QCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYYNYAKYLEARRDIEAALEYYEKAGV------ 886 (1416)
T ss_pred HHHHH---------HHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHHHHHHHHHhhccHHHHHHHHHhcCC------
Confidence 99863 34445677789999999987764333 2 334677777777788999999999986432
Q ss_pred hhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 047648 221 VVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSL 300 (537)
Q Consensus 221 ~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 300 (537)
..++. .+.+ ..+......+.+.+. |...|......+-..|+.+.|+.+|..... |-.+
T Consensus 887 -hafev-~rmL-----~e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~ 944 (1416)
T KOG3617|consen 887 -HAFEV-FRML-----KEYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSM 944 (1416)
T ss_pred -hHHHH-HHHH-----HhChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhh
Confidence 22221 1122 122223333444332 556666666667778899999988877764 5667
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CCCCHhHHHHHHH
Q 047648 301 INGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQG--------LSPSVITYNTLID 372 (537)
Q Consensus 301 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~ 372 (537)
++..|-+|+.++|-++-++- .|......+.+.|-..|++.+|..+|.+..... -..+...+|
T Consensus 945 VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~n---- 1014 (1416)
T KOG3617|consen 945 VRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLAN---- 1014 (1416)
T ss_pred eeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH----
Confidence 77778888888887776552 355666677888888888888888887654210 000111111
Q ss_pred HHHhcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--------HHHC--CCCCChHHHHHH
Q 047648 373 AYCKEG--RMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNE--------LVNN--GMRAGLVTYNIL 440 (537)
Q Consensus 373 ~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~--------~~~~--~~~~~~~~~~~l 440 (537)
.+...| +.-.|-+.|++. |.. +...+..|-+.|.+.+|+++--+ ++.. ....|+...+.-
T Consensus 1015 lal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rc 1086 (1416)
T KOG3617|consen 1015 LALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRC 1086 (1416)
T ss_pred HHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHH
Confidence 111111 122222233221 111 11223345556665555543211 1111 222345555555
Q ss_pred HHHHHhcCChHHHHHHHHHHHH------------------------chhcCCCCC----HHHHHHHHHHHHhcCCHHHHH
Q 047648 441 VGALCKDGKSKKAVSLLDEMFK------------------------MEKEKKWPN----IVTYNVLIKGFCQKGKLEDAN 492 (537)
Q Consensus 441 ~~~~~~~g~~~~A~~~~~~~~~------------------------~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~ 492 (537)
.+.+....++++|..++-.+.+ ..+.+ .|+ ......+...|.++|.+..|.
T Consensus 1087 adFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~-~~~e~~R~~vLeqvae~c~qQG~Yh~At 1165 (1416)
T KOG3617|consen 1087 ADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDD-MPNEQERKQVLEQVAELCLQQGAYHAAT 1165 (1416)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCC-CccHHHHHHHHHHHHHHHHhccchHHHH
Confidence 5666666666666655443322 11111 222 345677788899999999988
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHhcCCcCCc
Q 047648 493 GLLNELLEKGLIPNQTTYQIVREEMMEKGFIPDI 526 (537)
Q Consensus 493 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a 526 (537)
+-|-+.-+ -...++++.++|+.++.
T Consensus 1166 KKfTQAGd---------Kl~AMraLLKSGdt~KI 1190 (1416)
T KOG3617|consen 1166 KKFTQAGD---------KLSAMRALLKSGDTQKI 1190 (1416)
T ss_pred HHHhhhhh---------HHHHHHHHHhcCCcceE
Confidence 77666532 12456778888887654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.4e-06 Score=88.73 Aligned_cols=340 Identities=11% Similarity=-0.002 Sum_probs=217.1
Q ss_pred HHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCC------CCC--HHHHHHHH
Q 047648 122 LMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRI------ELN--LDSFNFVL 193 (537)
Q Consensus 122 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~ 193 (537)
....+...|++..+..+++.+.......+..........+...|+++++...+......-- .+. ......+.
T Consensus 380 ~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a 459 (903)
T PRK04841 380 HGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRA 459 (903)
T ss_pred hHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHH
Confidence 4455667788888777777653221122233334445566788999999999987754311 111 12223334
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCh----hhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHC----CC-CCCHHHHHH
Q 047648 194 NGLCKAGKLNKASDIMEDMKSLGVSPKV----VTYNILIDGYCKKGGIGKMYKADAVFKDMVEN----GI-LPNEVTFNT 264 (537)
Q Consensus 194 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~----~~-~p~~~~~~~ 264 (537)
..+...|++++|...+++..+.-...+. ...+.+...+.. .|++++|...+.+.... |. .+...++..
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~---~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~ 536 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHC---KGELARALAMMQQTEQMARQHDVYHYALWSLLQ 536 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence 5566899999999999998763111121 233445555666 79999999998887642 11 111234556
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhC----CCC--C-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCC--CHHHHH
Q 047648 265 LIDGFCKDENISAAMKVFEEMGSH----GIA--A-GVVTYNSLINGLCVDGKLDEAVALRDEMMASG--LKP--NVVTSN 333 (537)
Q Consensus 265 l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~~ 333 (537)
+...+...|++++|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+.
T Consensus 537 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 616 (903)
T PRK04841 537 QSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLA 616 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHH
Confidence 677788899999999998876542 211 1 12334455667778899999999998876531 112 233445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHhHH-----HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH---HHHHH
Q 047648 334 ALINGFCKKKLVEKARVLFDDISEQGLSP-SVITY-----NTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDV---STYNC 404 (537)
Q Consensus 334 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~ 404 (537)
.+...+...|+.+.|...+.......... ....+ ...+..+...|+.+.|...+............ ..+..
T Consensus 617 ~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~ 696 (903)
T PRK04841 617 MLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRN 696 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHH
Confidence 56677888999999999998875431110 11111 11224455688999999988776543221111 12445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-hHHHHHHHHHHHhcCChHHHHHHHHHHHHch
Q 047648 405 LIAGLSREGNVEGVRNIMNELVNN----GMRAG-LVTYNILVGALCKDGKSKKAVSLLDEMFKME 464 (537)
Q Consensus 405 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 464 (537)
+..++...|+.++|...+++.... |.... ..++..+..++...|+.++|...+.+++++.
T Consensus 697 ~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 697 IARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 677788999999999999988764 22222 3466777888999999999999999998744
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1e-07 Score=89.41 Aligned_cols=246 Identities=13% Similarity=0.123 Sum_probs=188.5
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 047648 267 DGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVE 346 (537)
Q Consensus 267 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 346 (537)
.-+.+.|++.+|.-.|+...+.. +-+...|..|......+++-..|+..+.+..+.. +-+......|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 34567899999999999988875 3378899999999999999999999999999864 446788888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHH-----------HHHhcCChHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCC
Q 047648 347 KARVLFDDISEQGLSPSVITYNTLID-----------AYCKEGRMEDAFAMRNSML-DRGVLPDVSTYNCLIAGLSREGN 414 (537)
Q Consensus 347 ~a~~~~~~~~~~~~~~~~~~~~~l~~-----------~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~~~ 414 (537)
.|.+.++.-....++ |..+.. .+.....+....++|-++. ..+..+|+.+...|.-.|--.|+
T Consensus 371 ~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 999999887654321 111110 1111112333444444444 44545788889999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047648 415 VEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGL 494 (537)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 494 (537)
+++|...|+.++... |.|...||.|...++...+.++|+..|.+++++.+. =+.++..|.-.|+..|.+++|.+.
T Consensus 446 fdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~----yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG----YVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred HHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC----eeeeehhhhhhhhhhhhHHHHHHH
Confidence 999999999999875 667899999999999999999999999999975422 245677788899999999999999
Q ss_pred HHHHHHc---------CCCCCHHhHHHHHHHHHhcCCcC
Q 047648 495 LNELLEK---------GLIPNQTTYQIVREEMMEKGFIP 524 (537)
Q Consensus 495 ~~~~~~~---------g~~p~~~~~~~l~~~~~~~g~~~ 524 (537)
|=+.+.. +..++...|..+-.++.-.++.|
T Consensus 521 lL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 521 LLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred HHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 8776642 11233467888888888887766
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.7e-08 Score=87.35 Aligned_cols=250 Identities=16% Similarity=0.061 Sum_probs=127.8
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHH
Q 047648 237 IGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVAL 316 (537)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 316 (537)
.|++..++.-.+ ........+......+.+++...|+++.++ .++.... .|.......+...+...++-+.++.-
T Consensus 14 ~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~ 88 (290)
T PF04733_consen 14 LGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEE 88 (290)
T ss_dssp TT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHH
T ss_pred hhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHH
Confidence 466666654443 222111112333444556666666655433 2222222 44444444444433333344444444
Q ss_pred HHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 047648 317 RDEMMASGLK-PNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGV 395 (537)
Q Consensus 317 ~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 395 (537)
+++....... .+..........+...|++++|++++... .+.......+.+|.+.++++.|.+.++.|.+.+
T Consensus 89 l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~- 161 (290)
T PF04733_consen 89 LKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID- 161 (290)
T ss_dssp HHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS-
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-
Confidence 4443332222 12222223334455567777776666432 245555666677777777777777777776542
Q ss_pred CCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCC
Q 047648 396 LPDVSTYNCLIAGLS----REGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPN 471 (537)
Q Consensus 396 ~p~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 471 (537)
.|. +...+..++. ..+.+.+|..+|+++.+. .++++.+.+.+..++...|++++|.++++++++.. +.+
T Consensus 162 -eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~----~~~ 234 (290)
T PF04733_consen 162 -EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD----PND 234 (290)
T ss_dssp -CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-----CCH
T ss_pred -CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc----cCC
Confidence 232 2333333332 233577777777776554 35667777777777777777777777777765322 335
Q ss_pred HHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCH
Q 047648 472 IVTYNVLIKGFCQKGKL-EDANGLLNELLEKGLIPNQ 507 (537)
Q Consensus 472 ~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~g~~p~~ 507 (537)
+.++..++.+....|+. +.+.+.+.++.. ..|+.
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~--~~p~h 269 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQ--SNPNH 269 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHH--HTTTS
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHH--hCCCC
Confidence 56666666666666666 556667777666 33543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.2e-05 Score=77.62 Aligned_cols=333 Identities=13% Similarity=0.119 Sum_probs=166.1
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHH-----------HHHHHhCCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047648 150 SVLSCNQLLRALVKEGKFEDVEYV-----------YKEMKRRRI--ELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLG 216 (537)
Q Consensus 150 ~~~~~~~l~~~~~~~~~~~~a~~~-----------~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 216 (537)
..+.|....+.+.+..+.+--.++ .++..+.++ ..|+......+.++...+-..+-+++++++.-..
T Consensus 935 eNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~ 1014 (1666)
T KOG0985|consen 935 ENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDN 1014 (1666)
T ss_pred chhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCC
Confidence 334555666666666654443333 333333332 2356666777788888888888888888876321
Q ss_pred --CCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC-----
Q 047648 217 --VSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHG----- 289 (537)
Q Consensus 217 --~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----- 289 (537)
+.-+...-|.++-...+ -+.....++++++..-+. |+ +...+...+-+++|..+|++....+
T Consensus 1015 S~Fse~~nLQnLLiLtAik----ad~trVm~YI~rLdnyDa-~~------ia~iai~~~LyEEAF~ifkkf~~n~~A~~V 1083 (1666)
T KOG0985|consen 1015 SVFSENRNLQNLLILTAIK----ADRTRVMEYINRLDNYDA-PD------IAEIAIENQLYEEAFAIFKKFDMNVSAIQV 1083 (1666)
T ss_pred cccccchhhhhhHHHHHhh----cChHHHHHHHHHhccCCc-hh------HHHHHhhhhHHHHHHHHHHHhcccHHHHHH
Confidence 11222333445555444 333455556655543321 12 2233334455566666665442110
Q ss_pred ----------------CCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047648 290 ----------------IAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFD 353 (537)
Q Consensus 290 ----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 353 (537)
--..+..|+.+..+-.+.|...+|++-|-+. .|+..|..+++...+.|.+++..+++.
T Consensus 1084 Lie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~ 1157 (1666)
T KOG0985|consen 1084 LIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLL 1157 (1666)
T ss_pred HHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 0012334444555545555555444444221 234445555555555555555555444
Q ss_pred HHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 047648 354 DISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAG 433 (537)
Q Consensus 354 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 433 (537)
...+..-.|.. =..|+-+|++.++..+..+++ ..|+..-...+..-|...|.++.|.-+|..
T Consensus 1158 MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------- 1219 (1666)
T KOG0985|consen 1158 MARKKVREPYI--DSELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN--------- 1219 (1666)
T ss_pred HHHHhhcCccc--hHHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------
Confidence 44433222222 223444555555444333222 123444444445555555555544444432
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 047648 434 LVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIV 513 (537)
Q Consensus 434 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 513 (537)
...|..|...+...|+++.|.+.-+++ .+..+|..+-.+|...+.+.-| +|....+.....-+..+
T Consensus 1220 vSN~a~La~TLV~LgeyQ~AVD~aRKA---------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeel 1285 (1666)
T KOG0985|consen 1220 VSNFAKLASTLVYLGEYQGAVDAARKA---------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEEL 1285 (1666)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhc---------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHH
Confidence 233455555555555555555554444 2455666666666655554322 33333444556667778
Q ss_pred HHHHHhcCCcCCccCCCC
Q 047648 514 REEMMEKGFIPDIEGHMY 531 (537)
Q Consensus 514 ~~~~~~~g~~~~a~~~l~ 531 (537)
++-|-..|.+++....++
T Consensus 1286 i~~Yq~rGyFeElIsl~E 1303 (1666)
T KOG0985|consen 1286 IEYYQDRGYFEELISLLE 1303 (1666)
T ss_pred HHHHHhcCcHHHHHHHHH
Confidence 888888888877766554
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.9e-06 Score=86.01 Aligned_cols=442 Identities=12% Similarity=0.030 Sum_probs=240.5
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHCC-CCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHH
Q 047648 62 SLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNG-KFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFK 140 (537)
Q Consensus 62 ~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 140 (537)
....+..+|+++-....+..|...+..+-+.- +...|.+.|...-+- .+.+...+..+...|++..+++.|..+.-
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL---Datdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL---DATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 44445555555555555555555444433321 111233333332222 35666788889999999999999988844
Q ss_pred HHhhCCC-CCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 047648 141 RAGDYGL-KSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSP 219 (537)
Q Consensus 141 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 219 (537)
+..+... ..-...|..+.-.+.+.++...+..-|+...+..+. |...|..++.+|...|++..|.++|.+..... |
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P 627 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLR--P 627 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--c
Confidence 4333210 011223444555677788899999999998887655 88889999999999999999999999887753 3
Q ss_pred ChhhHHHHHH--HHhcCCCCCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH-----
Q 047648 220 KVVTYNILID--GYCKKGGIGKMYKADAVFKDMVEN------GILPNEVTFNTLIDGFCKDENISAAMKVFEEMG----- 286 (537)
Q Consensus 220 ~~~~~~~ll~--~~~~~~~~~~~~~a~~~~~~~~~~------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----- 286 (537)
+. .|..... .-+. .|.+.++...+...... +..--..++..+...+.-.|-..++.++++..+
T Consensus 628 ~s-~y~~fk~A~~ecd---~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~ 703 (1238)
T KOG1127|consen 628 LS-KYGRFKEAVMECD---NGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIV 703 (1238)
T ss_pred Hh-HHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 32 2222111 1223 68888888888776532 111122333333333333344444444444332
Q ss_pred --hCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH---H---HHHHHHHHHHHc
Q 047648 287 --SHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLV---E---KARVLFDDISEQ 358 (537)
Q Consensus 287 --~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~---~a~~~~~~~~~~ 358 (537)
.+....+...|-.+- .|..+|.... .. .|+......+..-..+.+.. + -+.+.+-.-.+
T Consensus 704 ~l~h~~~~~~~~Wi~as----------dac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls- 770 (1238)
T KOG1127|consen 704 SLIHSLQSDRLQWIVAS----------DACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS- 770 (1238)
T ss_pred HHHHhhhhhHHHHHHHh----------HHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH-
Confidence 222122222332222 2223333322 11 23322222222212222221 1 11111111111
Q ss_pred CCCCCHhHHHHHHHHHHh----c----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 047648 359 GLSPSVITYNTLIDAYCK----E----GRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGM 430 (537)
Q Consensus 359 ~~~~~~~~~~~l~~~~~~----~----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 430 (537)
...+..+|..++..|.+ . .+...|...+...++..-. +..+|+.|.-. ...|++.-+...|-+.....
T Consensus 771 -l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~se- 846 (1238)
T KOG1127|consen 771 -LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFSE- 846 (1238)
T ss_pred -HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-
Confidence 11123344444444332 1 1233566777766655333 66677766655 66677777777776666553
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCCC
Q 047648 431 RAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELL----EKGLIPN 506 (537)
Q Consensus 431 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~g~~p~ 506 (537)
+....+|..+.-.+.+..+++.|...|.....+. +.|...|-.........|+.-++..+|..-- ..|--|+
T Consensus 847 p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd----P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~ 922 (1238)
T KOG1127|consen 847 PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD----PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKK 922 (1238)
T ss_pred ccchhheeccceeEEecccHHHhhHHHHhhhhcC----chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccch
Confidence 4556777778778888888888888888776543 3466677766666667787777777776622 2344456
Q ss_pred HHhHHHHHHHHHhcCCcCCccCCCCccC
Q 047648 507 QTTYQIVREEMMEKGFIPDIEGHMYNIS 534 (537)
Q Consensus 507 ~~~~~~l~~~~~~~g~~~~a~~~l~~~~ 534 (537)
..-|......-...|++++-...+.+++
T Consensus 923 f~Yw~c~te~h~~Ng~~e~~I~t~~ki~ 950 (1238)
T KOG1127|consen 923 FQYWLCATEIHLQNGNIEESINTARKIS 950 (1238)
T ss_pred hhHHHHHHHHHHhccchHHHHHHhhhhh
Confidence 6666666666666666655554444443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.8e-07 Score=86.49 Aligned_cols=251 Identities=16% Similarity=0.115 Sum_probs=185.9
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHH
Q 047648 237 IGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVAL 316 (537)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 316 (537)
.|++.+|.-.|+..+..+.. +...|..|.......++-..|+..+.+..+.. +.+....-.|.-.|...|.-..|++.
T Consensus 298 nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred cCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 57788888888877776433 67788888888888888888888888887764 23566777777778888888888888
Q ss_pred HHHHHHcCCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCHhHHHHHHHHHHhcCChHHHHHHH
Q 047648 317 RDEMMASGLKP--------NVVTSNALINGFCKKKLVEKARVLFDDIS-EQGLSPSVITYNTLIDAYCKEGRMEDAFAMR 387 (537)
Q Consensus 317 ~~~~~~~~~~~--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 387 (537)
+...+....+- +...-.. ..+.....+....++|-++. ..+..+|+.+...|.-.|.-.|.+++|.+.|
T Consensus 376 L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 376 LDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 88876542100 0000000 11112223444555555554 4454578889999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCChHHHHHHHHHHHHchhc
Q 047648 388 NSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAG-LVTYNILVGALCKDGKSKKAVSLLDEMFKMEKE 466 (537)
Q Consensus 388 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 466 (537)
+.++...+. |..+||.|...++...+.++|+..|.+.++. .|+ +.+.-.|.-.|...|.+++|.+.|-.++.|.+.
T Consensus 454 ~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 454 EAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 999988766 8899999999999999999999999999986 565 466777888999999999999999999987655
Q ss_pred CCC------CCHHHHHHHHHHHHhcCCHHHHHHH
Q 047648 467 KKW------PNIVTYNVLIKGFCQKGKLEDANGL 494 (537)
Q Consensus 467 ~~~------~~~~~~~~l~~~~~~~g~~~~A~~~ 494 (537)
+.. ++-..|.+|=.++.-.++.|-+.++
T Consensus 531 s~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 531 SRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred ccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 322 2346888888888888887755544
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.8e-07 Score=85.51 Aligned_cols=232 Identities=17% Similarity=0.136 Sum_probs=185.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047648 261 TFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFC 340 (537)
Q Consensus 261 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 340 (537)
.-..+...+...|-...|..+|++... |.-++.+|...|+..+|..+..+..++ +||+..|..+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 335677888899999999999987653 667889999999999999999888873 799999999999988
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047648 341 KKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRN 420 (537)
Q Consensus 341 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 420 (537)
...-+++|.++++....+ .-..+.....+.++++++.+.|+.-.+.++- ...+|..+..+..+.++++.+.+
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHH
Confidence 888899999999876543 1122222234478999999999998887544 67889999999999999999999
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 421 IMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
.|..-.... +.+...||.+-.+|.+.|+-.+|...+.++.+- + ..+...|...+-.....|.+++|++.+.++.+
T Consensus 541 aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc---n-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 541 AFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC---N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc---C-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 999888754 455789999999999999999999999999863 2 45677888888899999999999999999876
Q ss_pred cCC-CCCHHhHHHHHHH
Q 047648 501 KGL-IPNQTTYQIVREE 516 (537)
Q Consensus 501 ~g~-~p~~~~~~~l~~~ 516 (537)
... .-|......++..
T Consensus 616 ~~~~~~d~~vl~~iv~~ 632 (777)
T KOG1128|consen 616 LRKKYKDDEVLLIIVRT 632 (777)
T ss_pred hhhhcccchhhHHHHHH
Confidence 321 1244444444443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.2e-05 Score=73.91 Aligned_cols=231 Identities=13% Similarity=0.077 Sum_probs=143.1
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH--HH
Q 047648 271 KDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDG-KLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLV--EK 347 (537)
Q Consensus 271 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--~~ 347 (537)
..+..++|+.+..++++.. +-+..+|+.--.++...| ++++++..++++.+.. +.+..+|+.....+.+.|.. ++
T Consensus 49 ~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 49 SDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHH
Confidence 3456667777777766642 113344554445555555 4677777777777653 33444555444444455542 56
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CC----HHHHHH
Q 047648 348 ARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSRE---GN----VEGVRN 420 (537)
Q Consensus 348 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---~~----~~~a~~ 420 (537)
+..+++++.+.+.+ +..+|+....++...|+++++++.++++++.++. +...|+....++.+. |. .++...
T Consensus 127 el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 127 ELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHH
Confidence 67777777776554 6777777777777778888888888888877666 666676666555544 22 245666
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHhc----CChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcC----------
Q 047648 421 IMNELVNNGMRAGLVTYNILVGALCKD----GKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKG---------- 486 (537)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------- 486 (537)
+..+++... +-|...|+.+...+... +...+|.+.+.+..+. .+.++.....|+..|+...
T Consensus 205 y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~----~~~s~~al~~l~d~~~~~~~~~~~~~~~~ 279 (320)
T PLN02789 205 YTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK----DSNHVFALSDLLDLLCEGLQPTAEFRDTV 279 (320)
T ss_pred HHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc----cCCcHHHHHHHHHHHHhhhccchhhhhhh
Confidence 666666654 55677777777777663 3345677777776541 1346667777777777532
Q ss_pred --------CHHHHHHHHHHHHHcCCCCCHHhHHH
Q 047648 487 --------KLEDANGLLNELLEKGLIPNQTTYQI 512 (537)
Q Consensus 487 --------~~~~A~~~~~~~~~~g~~p~~~~~~~ 512 (537)
..++|.++++.+.+ ..|-..-|-.
T Consensus 280 ~~~~~~~~~~~~a~~~~~~l~~--~d~ir~~yw~ 311 (320)
T PLN02789 280 DTLAEELSDSTLAQAVCSELEV--ADPMRRNYWA 311 (320)
T ss_pred hccccccccHHHHHHHHHHHHh--hCcHHHHHHH
Confidence 34678888888843 5555444433
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.83 E-value=7e-06 Score=75.39 Aligned_cols=215 Identities=11% Similarity=0.047 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047648 118 IIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEG-KFEDVEYVYKEMKRRRIELNLDSFNFVLNGL 196 (537)
Q Consensus 118 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 196 (537)
+++.+-..+...++.++|+.++..++..+ +-+..+|+.-..++...| ++++++..++++.+...+ +..+|+.....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence 33344445555667777777777777754 334456666666666666 467777777777766544 555666555555
Q ss_pred HhcCCh--hHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--
Q 047648 197 CKAGKL--NKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKD-- 272 (537)
Q Consensus 197 ~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-- 272 (537)
.+.|+. ++++.+++++.+... -+..+|+...-++.. .|.++++++.+.++++.+.. |..+|+.....+.+.
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~---l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~ 191 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRT---LGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPL 191 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccc
Confidence 555542 566777777776543 256677776666666 67777777777777776544 555666555444433
Q ss_pred -CC----HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhC----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 047648 273 -EN----ISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVD----GKLDEAVALRDEMMASGLKPNVVTSNALINGFCK 341 (537)
Q Consensus 273 -g~----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 341 (537)
|. .++.++...+++... +-+...|+.+...+... ++..+|.+.+.+....+ +.+......+++.|+.
T Consensus 192 l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 192 LGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 21 234555555555442 23556666666665552 23345666666655432 2344555556666553
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.6e-05 Score=76.50 Aligned_cols=425 Identities=12% Similarity=-0.034 Sum_probs=224.2
Q ss_pred ChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHC------------------CCCCChHHHHH
Q 047648 42 DPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKN------------------GKFTSVSTIFH 103 (537)
Q Consensus 42 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~------------------g~~~~~~~~~~ 103 (537)
+...|+..|-.+++. .+.-..+|..|.+.|....+..+|.+-++...+. .+.+.+..+.-
T Consensus 473 ~~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 473 NSALALHALIRALRL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hHHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 356677777777665 4556667888888887766666666655544332 12222222211
Q ss_pred HhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCC
Q 047648 104 ALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIE 183 (537)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 183 (537)
...+..+. ..-..-|--..-.|...+++..|+.-|+...+.. |.|...|..++.+|...|++..|.++|++.....+.
T Consensus 551 ~~~qka~a-~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 551 RAAQKAPA-FACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL 628 (1238)
T ss_pred HHhhhchH-HHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence 11110000 0001222235567888899999999999999875 458889999999999999999999999988776322
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC------CCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHH-------H
Q 047648 184 LNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLG------VSPKVVTYNILIDGYCKKGGIGKMYKADAVFKD-------M 250 (537)
Q Consensus 184 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~-------~ 250 (537)
+...--.....-+..|.+.++...+....... ..--..++-.+...+.. .|-..++.+.++. .
T Consensus 629 -s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~---~gf~~kavd~~eksie~f~~~ 704 (1238)
T KOG1127|consen 629 -SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAI---TGFQKKAVDFFEKSIESFIVS 704 (1238)
T ss_pred -hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH---HHHhhhhhHHHHHHHHHHHHH
Confidence 22222223334567899999999998876531 01112222222222222 2222233333332 2
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCH---H---HHHHHHHHHHHcC
Q 047648 251 VENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKL---D---EAVALRDEMMASG 324 (537)
Q Consensus 251 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~---~A~~~~~~~~~~~ 324 (537)
.......+...|..+-. |..+|-+.. .. .|+.....++..-.-..+.. + -+.+.+-.-.+
T Consensus 705 l~h~~~~~~~~Wi~asd----------ac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls-- 770 (1238)
T KOG1127|consen 705 LIHSLQSDRLQWIVASD----------ACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS-- 770 (1238)
T ss_pred HHHhhhhhHHHHHHHhH----------HHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--
Confidence 22221112223322222 222222222 11 11222212221111112111 1 11111111111
Q ss_pred CCCCHHHHHHHHHHHHh----c----CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 047648 325 LKPNVVTSNALINGFCK----K----KLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVL 396 (537)
Q Consensus 325 ~~~~~~~~~~ll~~~~~----~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 396 (537)
...+..+|..++..|.+ . .+...|...+.+..+..- .+..+|+.|.-. ...|.+.-|...|-.-....+.
T Consensus 771 l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~a-nn~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~ 848 (1238)
T KOG1127|consen 771 LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCA-NNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPT 848 (1238)
T ss_pred HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhh-ccHHHHHHHHHh-hccchhhhhhhhhhhhhhcccc
Confidence 11223444444433332 1 223456666666655422 255666665544 5567777777666665554433
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHH--HHHchhcCCCCCHHH
Q 047648 397 PDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDE--MFKMEKEKKWPNIVT 474 (537)
Q Consensus 397 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~~~~~ 474 (537)
...+|..+.-.+.+..+++.|...|...+... |.+...|.......-..|+.-++..+|.. ...+ +.+.-|+...
T Consensus 849 -~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~-~~gka~~f~Y 925 (1238)
T KOG1127|consen 849 -CHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCS-KEGKAKKFQY 925 (1238)
T ss_pred -chhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhc-cccccchhhH
Confidence 56677777777788888888888888777654 44455555555555566777777777766 3322 2344556666
Q ss_pred HHHHHHHHHhcCCHHHHHH
Q 047648 475 YNVLIKGFCQKGKLEDANG 493 (537)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~ 493 (537)
|.........+|+.++-+.
T Consensus 926 w~c~te~h~~Ng~~e~~I~ 944 (1238)
T KOG1127|consen 926 WLCATEIHLQNGNIEESIN 944 (1238)
T ss_pred HHHHHHHHHhccchHHHHH
Confidence 6655556666666555443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.2e-06 Score=72.18 Aligned_cols=119 Identities=9% Similarity=0.120 Sum_probs=78.1
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHH-HhcCC--hHHH
Q 047648 377 EGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGAL-CKDGK--SKKA 453 (537)
Q Consensus 377 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A 453 (537)
.++.+++...++..++.++. |...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 45556666666666665544 66677777777777777777777777777654 44566666666653 55555 4777
Q ss_pred HHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 454 VSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEK 501 (537)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (537)
.++++++++.. +.+..++..+...+.+.|++++|+..|+++++.
T Consensus 130 ~~~l~~al~~d----P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALD----ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhC----CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77777776533 335566677777777777777777777777764
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.74 E-value=0.00041 Score=70.05 Aligned_cols=263 Identities=14% Similarity=0.225 Sum_probs=147.6
Q ss_pred CCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHH
Q 047648 60 SHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAF 139 (537)
Q Consensus 60 ~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 139 (537)
..++...+..+.++...+...+..++++..+-.. +.+..+....+.|+-.-.+. +.....+..
T Consensus 981 ~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~----------------S~Fse~~nLQnLLiLtAika-d~trVm~YI 1043 (1666)
T KOG0985|consen 981 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDN----------------SVFSENRNLQNLLILTAIKA-DRTRVMEYI 1043 (1666)
T ss_pred cCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCC----------------cccccchhhhhhHHHHHhhc-ChHHHHHHH
Confidence 3455555666677777776666666666544321 11122233444444443332 334445555
Q ss_pred HHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 047648 140 KRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSP 219 (537)
Q Consensus 140 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 219 (537)
+++...+. | .+...+...+-+++|..+|++.. .+....+.|+.- -+.++.|.+.-++..
T Consensus 1044 ~rLdnyDa-~------~ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ldRA~efAe~~n------ 1102 (1666)
T KOG0985|consen 1044 NRLDNYDA-P------DIAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGSLDRAYEFAERCN------ 1102 (1666)
T ss_pred HHhccCCc-h------hHHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhhHHHHHHHHHhhC------
Confidence 55544321 1 23344555666777777776543 244444444442 355666666555432
Q ss_pred ChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 047648 220 KVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNS 299 (537)
Q Consensus 220 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 299 (537)
.+..|..+..+-.+ .+...+|++-|-+. -|+..|..++....+.|.+++-.+++....+..-.|... +.
T Consensus 1103 ~p~vWsqlakAQL~---~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~e 1171 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQ---GGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SE 1171 (1666)
T ss_pred ChHHHHHHHHHHHh---cCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HH
Confidence 45667777777776 66666666555332 256677777777777777777777777666654444433 45
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC
Q 047648 300 LINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGR 379 (537)
Q Consensus 300 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 379 (537)
++-+|++.++..+..+++ .-|+......+.+-|...+.++.|.-+|..+ .-|..|...+...|+
T Consensus 1172 Li~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~Lge 1235 (1666)
T KOG0985|consen 1172 LIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGE 1235 (1666)
T ss_pred HHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHH
Confidence 667777777766655444 2356666666666666666666666655433 234555555555555
Q ss_pred hHHHHHHH
Q 047648 380 MEDAFAMR 387 (537)
Q Consensus 380 ~~~A~~~~ 387 (537)
+..|.+.-
T Consensus 1236 yQ~AVD~a 1243 (1666)
T KOG0985|consen 1236 YQGAVDAA 1243 (1666)
T ss_pred HHHHHHHh
Confidence 55555443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.1e-06 Score=70.92 Aligned_cols=100 Identities=9% Similarity=-0.072 Sum_probs=64.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHH
Q 047648 402 YNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKG 481 (537)
Q Consensus 402 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 481 (537)
+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...|++++++. +.+...+..+..+
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~----p~~~~a~~~lg~~ 101 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD----ASHPEPVYQTGVC 101 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----CCCcHHHHHHHHH
Confidence 4445556666677777777776666654 4456666666667777777777777777766533 3456666666667
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 047648 482 FCQKGKLEDANGLLNELLEKGLIPNQT 508 (537)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~g~~p~~~ 508 (537)
+...|++++|+..|++.++ +.|+..
T Consensus 102 l~~~g~~~eAi~~~~~Al~--~~p~~~ 126 (144)
T PRK15359 102 LKMMGEPGLAREAFQTAIK--MSYADA 126 (144)
T ss_pred HHHcCCHHHHHHHHHHHHH--hCCCCh
Confidence 7777777777777777766 445443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.73 E-value=0.00025 Score=66.68 Aligned_cols=415 Identities=11% Similarity=0.060 Sum_probs=248.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHH
Q 047648 59 ASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEA 138 (537)
Q Consensus 59 ~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 138 (537)
.|.|..+|..||+-+..+ .+++...++++++.. +|..+..|..-|..-.+.++++....+
T Consensus 16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-------------------FP~s~r~W~~yi~~El~skdfe~VEkL 75 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-------------------FPSSPRAWKLYIERELASKDFESVEKL 75 (656)
T ss_pred CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-------------------CCCCcHHHHHHHHHHHHhhhHHHHHHH
Confidence 678888999999888666 888888888888865 366678899999999999999999999
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHhC-CChhH----HHHHHHHHH-hCCCCC-CHHHHHHHHHH---------HHhcCCh
Q 047648 139 FKRAGDYGLKSSVLSCNQLLRALVKE-GKFED----VEYVYKEMK-RRRIEL-NLDSFNFVLNG---------LCKAGKL 202 (537)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~----a~~~~~~~~-~~~~~~-~~~~~~~l~~~---------~~~~g~~ 202 (537)
|.+++.. ..+...|...+.-..+. |+... ..+.|+-.. +.|+.+ +...|+..+.. |..+.++
T Consensus 76 F~RCLvk--vLnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI 153 (656)
T KOG1914|consen 76 FSRCLVK--VLNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRI 153 (656)
T ss_pred HHHHHHH--HhhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHH
Confidence 9999875 34666777666644332 33332 334444433 344332 22334444432 3344566
Q ss_pred hHHHHHHHHHHhCCCCC------ChhhHHHHHHHHhc----CCCCCCHHHHHHHHHHHHH--CCCCCCHH----------
Q 047648 203 NKASDIMEDMKSLGVSP------KVVTYNILIDGYCK----KGGIGKMYKADAVFKDMVE--NGILPNEV---------- 260 (537)
Q Consensus 203 ~~a~~~~~~~~~~~~~~------~~~~~~~ll~~~~~----~~~~~~~~~a~~~~~~~~~--~~~~p~~~---------- 260 (537)
+...+++++++...+.- |-..|..-|+.... ......+..|.++++++.. +|...+..
T Consensus 154 ~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e 233 (656)
T KOG1914|consen 154 TAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDE 233 (656)
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHH
Confidence 77778888877542211 11112111111110 0013445566666666543 23221111
Q ss_pred -----HHHHHHHHHhccC------CH--HHHHHHHHHH-HhCCCCCChhhH-H----HHHHHHHhCCC-------HHHHH
Q 047648 261 -----TFNTLIDGFCKDE------NI--SAAMKVFEEM-GSHGIAAGVVTY-N----SLINGLCVDGK-------LDEAV 314 (537)
Q Consensus 261 -----~~~~l~~~~~~~g------~~--~~a~~~~~~~-~~~~~~~~~~~~-~----~l~~~~~~~~~-------~~~A~ 314 (537)
.|..+|..=-..+ .. ....-.+++. .-.+..|+.... . ..-+.+...|+ .+++.
T Consensus 234 ~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~ 313 (656)
T KOG1914|consen 234 IQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAA 313 (656)
T ss_pred HHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHH
Confidence 1333333211111 00 1111122221 112222222110 0 01122333333 34555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047648 315 ALRDEMMASGLKPNVVTSNALINGFCKKK---LVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSML 391 (537)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 391 (537)
.+++.....-...+..+|..+...--..- ..+....+++++...-..--..+|...+..-.+..-.+.|..+|.+..
T Consensus 314 ~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR 393 (656)
T KOG1914|consen 314 SIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAR 393 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHh
Confidence 66665554322334444444433222222 366667777777654322234578888888888999999999999999
Q ss_pred hCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCC
Q 047648 392 DRGVLP-DVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWP 470 (537)
Q Consensus 392 ~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 470 (537)
+.+..+ ++.++++++..++ .++.+-|.++|+--.+. ...++.--...++.+...++-..++.+|++++. .+..|
T Consensus 394 ~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~---s~l~~ 468 (656)
T KOG1914|consen 394 EDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLT---SVLSA 468 (656)
T ss_pred hccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHh---ccCCh
Confidence 887776 6777888887765 57889999999977765 234455557788888999999999999999985 23333
Q ss_pred --CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 471 --NIVTYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 471 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
....|..++.-=..-|+...+.++-+++..
T Consensus 469 ~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 469 DKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred hhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 457899999988899999999999888776
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.2e-06 Score=73.96 Aligned_cols=189 Identities=10% Similarity=-0.032 Sum_probs=127.0
Q ss_pred CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--hH
Q 047648 292 AGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNV---VTSNALINGFCKKKLVEKARVLFDDISEQGLSPSV--IT 366 (537)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 366 (537)
.....+..+...+...|+++.|...++++.... +.+. ..+..+..++...|++++|...++++.+..+.... ..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345667777788888999999999998887753 2222 45677788888889999999999988876443221 13
Q ss_pred HHHHHHHHHhc--------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHH
Q 047648 367 YNTLIDAYCKE--------GRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYN 438 (537)
Q Consensus 367 ~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 438 (537)
+..+..++.+. |+++.|.+.++.+.+..+. +...+..+..... ... .. .....
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~--------~~~~~ 170 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RL--------AGKEL 170 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HH--------HHHHH
Confidence 44555555554 6778888888888776433 2223222221110 000 00 01122
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 439 ILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEK 501 (537)
Q Consensus 439 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (537)
.+...+.+.|++++|+..++++++..+. .+.....+..++.++...|++++|...++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPD-TPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4667789999999999999999863221 1234678889999999999999999999988764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.1e-05 Score=78.17 Aligned_cols=234 Identities=12% Similarity=0.054 Sum_probs=183.5
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 047648 225 NILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGL 304 (537)
Q Consensus 225 ~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 304 (537)
..+...+.. .|-...|..+++++ ..|..++.+|...|+..+|..+..+..++ +|++..|..+.+..
T Consensus 402 ~~laell~s---lGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 402 RLLAELLLS---LGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred HHHHHHHHH---cchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 345555555 67788888888764 45777888999999999999999888774 68899999888888
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHH
Q 047648 305 CVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAF 384 (537)
Q Consensus 305 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 384 (537)
....-+++|.++.+....+ .-..+.....+.+++.++.+.|+.-.+.++- ...+|-...-+..+.+++..|.
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHH
Confidence 7777788999888775442 2223333344578999999999988776433 5678888888888999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHch
Q 047648 385 AMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKME 464 (537)
Q Consensus 385 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 464 (537)
+.|..-+...+. +...|+.+-.+|.+.++..+|...+++..+.+ .-+..+|...+....+.|.+++|.+.+.++.++.
T Consensus 540 ~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 540 KAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 999998876444 67799999999999999999999999999987 5666788888888999999999999999999877
Q ss_pred hcCCCCCHHHHHHHHHHHHh
Q 047648 465 KEKKWPNIVTYNVLIKGFCQ 484 (537)
Q Consensus 465 ~~~~~~~~~~~~~l~~~~~~ 484 (537)
+... |..+...++....+
T Consensus 618 ~~~~--d~~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 618 KKYK--DDEVLLIIVRTVLE 635 (777)
T ss_pred hhcc--cchhhHHHHHHHHh
Confidence 6655 44455555544443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1e-05 Score=83.71 Aligned_cols=223 Identities=12% Similarity=0.106 Sum_probs=170.6
Q ss_pred CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhH
Q 047648 291 AAGVVTYNSLINGLCVDGKLDEAVALRDEMMAS-GLKP---NVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVIT 366 (537)
Q Consensus 291 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 366 (537)
+.+...|-.-|....+.++.++|.+++++++.. ++.. -...|.++++.-..-|.-+...++|+++.+.. . ....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d-~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D-AYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c-hHHH
Confidence 335667777777888888889999988888764 1111 23567777777777788888889999887752 2 3457
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hHHHHHHHHH
Q 047648 367 YNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAG---LVTYNILVGA 443 (537)
Q Consensus 367 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~ 443 (537)
|..|...|.+.+.+++|.++++.|.++- .-....|...+..+.+..+-+.|..++++.++. -|. .....-.++.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHH
Confidence 8889999999999999999999998862 236778999999999999999999999988875 233 3445556677
Q ss_pred HHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HhHHHHHHHHHhcC
Q 047648 444 LCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQ--TTYQIVREEMMEKG 521 (537)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g 521 (537)
-.+.|+.++++.+|+..+.. .+.-...|+.+++.=.++|+.+.+..+|++.+..++.|-. ..|..+++-=...|
T Consensus 1610 EFk~GDaeRGRtlfEgll~a----yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~G 1685 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSA----YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHG 1685 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhh----CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcC
Confidence 78899999999999988752 2446778999999999999999999999999998887754 45666666444445
Q ss_pred C
Q 047648 522 F 522 (537)
Q Consensus 522 ~ 522 (537)
+
T Consensus 1686 d 1686 (1710)
T KOG1070|consen 1686 D 1686 (1710)
T ss_pred c
Confidence 4
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.70 E-value=0.0003 Score=66.20 Aligned_cols=402 Identities=13% Similarity=0.153 Sum_probs=239.2
Q ss_pred CchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 047648 113 CRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFV 192 (537)
Q Consensus 113 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 192 (537)
|.+..+|+.||+-+..+ ..+++.+.++++... ++-+...|..-+..-.+.++++.+..+|.+.+.. ..+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHH
Confidence 67789999999988776 999999999999875 5667789999999999999999999999998876 3466777766
Q ss_pred HHHHHh-cCChhHHH----HHHHHH-HhCCCCC-ChhhHHHHHHHHhcCCCCCC------HHHHHHHHHHHHHCCCCC--
Q 047648 193 LNGLCK-AGKLNKAS----DIMEDM-KSLGVSP-KVVTYNILIDGYCKKGGIGK------MYKADAVFKDMVENGILP-- 257 (537)
Q Consensus 193 ~~~~~~-~g~~~~a~----~~~~~~-~~~~~~~-~~~~~~~ll~~~~~~~~~~~------~~~a~~~~~~~~~~~~~p-- 257 (537)
+..-.+ .|+...+. +.|+-. .+.|+.+ +-..|+..+.-+-.-...|. ++...++++++...-+.-
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 654433 23333322 333332 2345433 33446666655443222344 444556666665432110
Q ss_pred ----CHHHHHHHHH-----HH--hccCCHHHHHHHHHHHHh--CCCCCChhh---------------HHHHHHHHHhCC-
Q 047648 258 ----NEVTFNTLID-----GF--CKDENISAAMKVFEEMGS--HGIAAGVVT---------------YNSLINGLCVDG- 308 (537)
Q Consensus 258 ----~~~~~~~l~~-----~~--~~~g~~~~a~~~~~~~~~--~~~~~~~~~---------------~~~l~~~~~~~~- 308 (537)
|-.+|..-|. -+ -+...+..|.++++++.. +|+.....+ |..+|.---.++
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 1122211111 11 133457778888877754 232222221 333332111111
Q ss_pred -----C--HHHHHHHHHHHHH-cCCCCCHHH-H----HHHHHHHHhcCC-------HHHHHHHHHHHHHcCCCCCHhHHH
Q 047648 309 -----K--LDEAVALRDEMMA-SGLKPNVVT-S----NALINGFCKKKL-------VEKARVLFDDISEQGLSPSVITYN 368 (537)
Q Consensus 309 -----~--~~~A~~~~~~~~~-~~~~~~~~~-~----~~ll~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~ 368 (537)
. -....-++++... -+..|+... + ...-+.+...|+ -+++..+++.....-...+..+|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0111222222221 233333211 0 111222333444 345555555544432222334444
Q ss_pred HHHHHHHhc---CChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHHH
Q 047648 369 TLIDAYCKE---GRMEDAFAMRNSMLDR-GVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRA-GLVTYNILVGA 443 (537)
Q Consensus 369 ~l~~~~~~~---g~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~ 443 (537)
.+...--.. .+.+....++++++.. ...| ..+|..+|+.-.+..-++.|..+|.+..+.+..+ .+.++++++.-
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy 411 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY 411 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence 433321111 1356666777777654 2333 3468888888889999999999999999987666 67888888887
Q ss_pred HHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HhHHHHHHHHHhcC
Q 047648 444 LCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQ--TTYQIVREEMMEKG 521 (537)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~--~~~~~l~~~~~~~g 521 (537)
|| .++.+-|.++|+--++ ....++..-...+..+...++-..|..+|++.+..++.||. .+|..+++-=..-|
T Consensus 412 ~c-skD~~~AfrIFeLGLk----kf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vG 486 (656)
T KOG1914|consen 412 YC-SKDKETAFRIFELGLK----KFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVG 486 (656)
T ss_pred Hh-cCChhHHHHHHHHHHH----hcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcc
Confidence 76 5688899999987764 23345556667788888999999999999999998777664 67888877555555
Q ss_pred CcC
Q 047648 522 FIP 524 (537)
Q Consensus 522 ~~~ 524 (537)
++.
T Consensus 487 dL~ 489 (656)
T KOG1914|consen 487 DLN 489 (656)
T ss_pred cHH
Confidence 543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.3e-05 Score=73.54 Aligned_cols=55 Identities=16% Similarity=0.244 Sum_probs=34.2
Q ss_pred HHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHH
Q 047648 122 LMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMK 178 (537)
Q Consensus 122 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 178 (537)
-|+.|.+.|.+-.|...-..-.. ...|......+..++.+..-++.|-.+|+++.
T Consensus 621 aiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~ 675 (1636)
T KOG3616|consen 621 AIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIH 675 (1636)
T ss_pred HHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhh
Confidence 46778888887777655432222 23455666666666666666677766666654
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.9e-06 Score=68.50 Aligned_cols=122 Identities=10% Similarity=-0.072 Sum_probs=89.4
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047648 350 VLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNG 429 (537)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 429 (537)
.++++..+. ++..+......+.+.|++++|...|+......+. +...|..+..++...|++++|...|++....+
T Consensus 14 ~~~~~al~~----~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV----DPETVYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 445555543 2323555677778888888888888888877654 77888888888888888888888888888865
Q ss_pred CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHH
Q 047648 430 MRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKG 481 (537)
Q Consensus 430 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 481 (537)
+.+...+..+..++...|++++|+..|+.+++.. +.+...|.....+
T Consensus 89 -p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~----p~~~~~~~~~~~~ 135 (144)
T PRK15359 89 -ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS----YADASWSEIRQNA 135 (144)
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCChHHHHHHHHH
Confidence 5677888888888888888888888888887643 2344555444433
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1e-05 Score=69.06 Aligned_cols=120 Identities=8% Similarity=0.069 Sum_probs=72.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH-HhcCC--hHHH
Q 047648 307 DGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAY-CKEGR--MEDA 383 (537)
Q Consensus 307 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A 383 (537)
.++.+++...++...+.. +.+...|..+...|...|+++.|...|++..+..+. +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 445555655565555543 445666666666666666666666666666665433 555555555543 45555 3666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047648 384 FAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNG 429 (537)
Q Consensus 384 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 429 (537)
.+++++..+.++. +...+..+...+...|++++|+..|+++.+..
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 6666666666544 55666666666666666666666666666653
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=0.0006 Score=67.43 Aligned_cols=264 Identities=10% Similarity=0.040 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhcc------CCCCchHHHHHHHHHHHHHcCCchHHH
Q 047648 63 LLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCS------DSLCRNSIIIDMLMLAYVKNMKPHLGF 136 (537)
Q Consensus 63 ~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~ 136 (537)
..+|..-..-+-..++.+.|.+.++. . ...+.++++-+.+.. ...-.++..|.=-...+-..|+.+.|+
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK---~--~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl 932 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEK---A--GVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAAL 932 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHh---c--CChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHH
Confidence 34444444444455555555444432 1 123444444443321 111223344554555666678888888
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047648 137 EAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLG 216 (537)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 216 (537)
.+|..+.+ |-++++..+-+|+.++|.++-++-. |......+.+.|-..|++.+|...|.+.....
T Consensus 933 ~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafs 997 (1416)
T KOG3617|consen 933 SFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQAFS 997 (1416)
T ss_pred HHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 88887764 5577888888999999988876543 66677788999999999999999998764321
Q ss_pred --C--CCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH--------H
Q 047648 217 --V--SPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFE--------E 284 (537)
Q Consensus 217 --~--~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~--------~ 284 (537)
+ -.....-..|.+.+..++ ..+...|..+|++. |.. +......|-++|.+.+|+++-= +
T Consensus 998 nAIRlcKEnd~~d~L~nlal~s~-~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~ 1068 (1416)
T KOG3617|consen 998 NAIRLCKENDMKDRLANLALMSG-GSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALD 1068 (1416)
T ss_pred HHHHHHHhcCHHHHHHHHHhhcC-chhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHH
Confidence 0 000000111222222211 23344444555442 111 2233456778888888776521 1
Q ss_pred HHhCCC--CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHH----------cC----------------CCCCH----HHH
Q 047648 285 MGSHGI--AAGVVTYNSLINGLCVDGKLDEAVALRDEMMA----------SG----------------LKPNV----VTS 332 (537)
Q Consensus 285 ~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------~~----------------~~~~~----~~~ 332 (537)
++..++ ..|+...+.-...++...++++|..++-...+ .+ -.|+. ...
T Consensus 1069 lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vL 1148 (1416)
T KOG3617|consen 1069 LIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVL 1148 (1416)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHH
Confidence 222222 23455555566666677777777766644322 11 12222 345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 047648 333 NALINGFCKKKLVEKARVLFDDI 355 (537)
Q Consensus 333 ~~ll~~~~~~~~~~~a~~~~~~~ 355 (537)
..+.+.|.+.|.+..|-+-|.+.
T Consensus 1149 eqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1149 EQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHhccchHHHHHHHhhh
Confidence 66777888888888777766553
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.2e-05 Score=80.25 Aligned_cols=201 Identities=14% Similarity=0.057 Sum_probs=87.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-----ChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 047648 188 SFNFVLNGLCKAGKLNKASDIMEDMKSLGVSP-----KVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTF 262 (537)
Q Consensus 188 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~ 262 (537)
.|-..|......++.++|.++.++.+.. +.+ -...|.++++.-.. .|.-+...++|++..+.. -....|
T Consensus 1460 ~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~---yG~eesl~kVFeRAcqyc--d~~~V~ 1533 (1710)
T KOG1070|consen 1460 LWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENA---YGTEESLKKVFERACQYC--DAYTVH 1533 (1710)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHh---hCcHHHHHHHHHHHHHhc--chHHHH
Confidence 4444455555555555555555554432 111 11233333333333 333344444444444321 012334
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHh
Q 047648 263 NTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLK-PNVVTSNALINGFCK 341 (537)
Q Consensus 263 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~ 341 (537)
..|...|.+.+.+++|.++|+.|.+.- ......|...+..+.++++-+.|..++.++++.-.+ .......-.+..-.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 444455555555555555555554431 123444445555555555555555555554443100 012222333333444
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 047648 342 KKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVL 396 (537)
Q Consensus 342 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 396 (537)
.|+.+.+..+|+......++ -...|+..+++-.++|+.+.+..+|+++...++.
T Consensus 1613 ~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred cCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 45555555555554443222 3344555555555555555555555555544443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.6e-06 Score=69.07 Aligned_cols=160 Identities=13% Similarity=0.072 Sum_probs=111.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 047648 333 NALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSRE 412 (537)
Q Consensus 333 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 412 (537)
..+-..+...|+-+....+......... .+.......+....+.|++..|...+++.....+ +|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHHHHHHHHc
Confidence 5555666666777766666666544322 2555666677777788888888888888777643 3777888888888888
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047648 413 GNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDAN 492 (537)
Q Consensus 413 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 492 (537)
|+++.|..-|.+..+.. +.++..++.+.-.+.-.|+.+.|..++...... -.-|..+-..+..+....|++++|.
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~----~~ad~~v~~NLAl~~~~~g~~~~A~ 222 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS----PAADSRVRQNLALVVGLQGDFREAE 222 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC----CCCchHHHHHHHHHHhhcCChHHHH
Confidence 88888888888777763 445667777777777888888888888777531 1236666777777777788888887
Q ss_pred HHHHHHH
Q 047648 493 GLLNELL 499 (537)
Q Consensus 493 ~~~~~~~ 499 (537)
.+...-+
T Consensus 223 ~i~~~e~ 229 (257)
T COG5010 223 DIAVQEL 229 (257)
T ss_pred hhccccc
Confidence 7765544
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.64 E-value=8.8e-06 Score=69.30 Aligned_cols=164 Identities=11% Similarity=0.059 Sum_probs=112.6
Q ss_pred hHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047648 115 NSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLN 194 (537)
Q Consensus 115 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 194 (537)
+..+ ..+...+...|+-+.+..+....... .+.+....+..+....+.|++..|...+.+..... ++|..+|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 3344 55667777777777777777765543 34455566667777888888888888888777654 447778888888
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 047648 195 GLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDEN 274 (537)
Q Consensus 195 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 274 (537)
+|.+.|+++.|..-|.+..+.... +...++.+.-.+.- .|+.+.|..++......+.. |...-..+.......|+
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L---~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~ 217 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLL---RGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGD 217 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHH---cCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCC
Confidence 888888888888888887776322 34445555555555 58888888888777765432 66666777777777888
Q ss_pred HHHHHHHHHHHH
Q 047648 275 ISAAMKVFEEMG 286 (537)
Q Consensus 275 ~~~a~~~~~~~~ 286 (537)
+++|.++...-.
T Consensus 218 ~~~A~~i~~~e~ 229 (257)
T COG5010 218 FREAEDIAVQEL 229 (257)
T ss_pred hHHHHhhccccc
Confidence 888877765543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.64 E-value=8.3e-05 Score=72.24 Aligned_cols=263 Identities=12% Similarity=0.121 Sum_probs=121.6
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHH
Q 047648 162 VKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMY 241 (537)
Q Consensus 162 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~ 241 (537)
....++.+|+.+++.+..+.. -..-|..+...|+..|+++.|.++|.+. ..++-.|.+|.+ .|+++
T Consensus 743 i~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k---~~kw~ 808 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGK---AGKWE 808 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhc---cccHH
Confidence 334445555555554443321 1222344445555555555555555432 122334445555 45555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 047648 242 KADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMM 321 (537)
Q Consensus 242 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 321 (537)
.|.++-.+.. |.......|.+-..-.-+.|++.+|.++|-.+.. |+ ..|.+|-+.|..+..+++.++-.
T Consensus 809 da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k~h 877 (1636)
T KOG3616|consen 809 DAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEKHH 877 (1636)
T ss_pred HHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHHhC
Confidence 5554443322 2222334444444444455555555554433221 11 23445555555555555544432
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC-------
Q 047648 322 ASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRG------- 394 (537)
Q Consensus 322 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------- 394 (537)
.. .-..|...+..-+...|++..|..-|-+.. -|.+-+.+|-..+.|++|.++.+.--..+
T Consensus 878 ~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~f 945 (1636)
T KOG3616|consen 878 GD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAF 945 (1636)
T ss_pred hh---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHH
Confidence 11 112344555566666777777766664432 24555666666666776666543211000
Q ss_pred -----CCCCH--H------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047648 395 -----VLPDV--S------TYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMF 461 (537)
Q Consensus 395 -----~~p~~--~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 461 (537)
+.-+. . .+..-+...+..+.++-|..+-+-..+.. ...+...+...+-..|++++|-+-|-+++
T Consensus 946 lwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k---~~~vhlk~a~~ledegk~edaskhyveai 1022 (1636)
T KOG3616|consen 946 LWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK---MGEVHLKLAMFLEDEGKFEDASKHYVEAI 1022 (1636)
T ss_pred HHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc---CccchhHHhhhhhhccchhhhhHhhHHHh
Confidence 00000 0 01111122233444444444444333322 11233344455667889999988888887
Q ss_pred Hch
Q 047648 462 KME 464 (537)
Q Consensus 462 ~~~ 464 (537)
++.
T Consensus 1023 kln 1025 (1636)
T KOG3616|consen 1023 KLN 1025 (1636)
T ss_pred hcc
Confidence 644
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.1e-05 Score=71.88 Aligned_cols=186 Identities=14% Similarity=0.017 Sum_probs=129.9
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-C-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CC-HHHH
Q 047648 257 PNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIA-A-GVVTYNSLINGLCVDGKLDEAVALRDEMMASGLK-PN-VVTS 332 (537)
Q Consensus 257 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~-~~~~ 332 (537)
.....+..+...+.+.|++++|...|+++...... | ....+..+..++...|++++|+..++++.+.... +. ..++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 35677888888999999999999999998875321 1 1246677889999999999999999999886321 11 1245
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 047648 333 NALINGFCKK--------KLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNC 404 (537)
Q Consensus 333 ~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 404 (537)
..+..++... |+.+.|.+.|+.+.+..+. +...+..+..... .... . ......
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~~------~--------~~~~~~ 171 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRNR------L--------AGKELY 171 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHHH------H--------HHHHHH
Confidence 5555666554 7789999999999887443 3333322221111 0000 0 011224
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC--CCChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047648 405 LIAGLSREGNVEGVRNIMNELVNNGM--RAGLVTYNILVGALCKDGKSKKAVSLLDEMF 461 (537)
Q Consensus 405 l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 461 (537)
+...+.+.|++++|...+++..+... +.....+..++.++.+.|++++|...++.+.
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56678889999999999999887631 2235788899999999999999999888875
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.60 E-value=3e-06 Score=68.09 Aligned_cols=121 Identities=12% Similarity=0.079 Sum_probs=77.0
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhc
Q 047648 387 RNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKE 466 (537)
Q Consensus 387 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 466 (537)
++++....+. +......+...+...|++++|...++.+...+ +.+...+..+..++...|++++|...++.++++.
T Consensus 6 ~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-- 81 (135)
T TIGR02552 6 LKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-- 81 (135)
T ss_pred HHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--
Confidence 4444444322 33445556666667777777777777776654 4456667777777777777777777777776532
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 047648 467 KKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVRE 515 (537)
Q Consensus 467 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 515 (537)
+.+...+..+...+...|++++|...+++.++ +.|+...+..+..
T Consensus 82 --p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~ 126 (135)
T TIGR02552 82 --PDDPRPYFHAAECLLALGEPESALKALDLAIE--ICGENPEYSELKE 126 (135)
T ss_pred --CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hccccchHHHHHH
Confidence 34566666677777777777777777777777 4466555444433
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.59 E-value=9.1e-05 Score=63.23 Aligned_cols=250 Identities=14% Similarity=0.114 Sum_probs=155.2
Q ss_pred HHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCC
Q 047648 159 RALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIG 238 (537)
Q Consensus 159 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 238 (537)
+-+.-.|.+..+...-....... -+...-..+-++|...|.+.....-.. .. -.|.......+...... .+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~eI~---~~-~~~~lqAvr~~a~~~~~---e~ 86 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISEIK---EG-KATPLQAVRLLAEYLEL---ES 86 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccccccc---cc-cCChHHHHHHHHHHhhC---cc
Confidence 33444566666555544433321 244444555666767776554333222 11 12233333333333333 34
Q ss_pred CHHHHHH-HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHH
Q 047648 239 KMYKADA-VFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALR 317 (537)
Q Consensus 239 ~~~~a~~-~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 317 (537)
+.++.+. +.+.+.......+......-...|+..|++++|++...... +......=+.++.+..+++-|.+.+
T Consensus 87 ~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~l 160 (299)
T KOG3081|consen 87 NKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKEL 160 (299)
T ss_pred hhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444333 34444444333343444444567888999999988877622 3334444456677888899999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047648 318 DEMMASGLKPNVVTSNALINGFCK----KKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDR 393 (537)
Q Consensus 318 ~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 393 (537)
++|.+. .+..|.+.|..++.+ .+.+..|.-+|+++.++ ..|++.+.+....++...|++++|..+++..+.+
T Consensus 161 k~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 161 KKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred HHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 999874 356677766666654 45688999999999775 5678888888899999999999999999999988
Q ss_pred CCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHC
Q 047648 394 GVLPDVSTYNCLIAGLSREGNV-EGVRNIMNELVNN 428 (537)
Q Consensus 394 ~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~ 428 (537)
... ++.++..++-+-...|.. +-..+.+.+++..
T Consensus 237 d~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 237 DAK-DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred cCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 666 777777666665556654 4455566666654
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.58 E-value=8.5e-08 Score=54.90 Aligned_cols=32 Identities=28% Similarity=0.728 Sum_probs=17.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 047648 181 RIELNLDSFNFVLNGLCKAGKLNKASDIMEDM 212 (537)
Q Consensus 181 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 212 (537)
|+.||..+|+.+|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44555555555555555555555555555554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.9e-05 Score=76.63 Aligned_cols=162 Identities=10% Similarity=0.011 Sum_probs=120.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 047648 325 LKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNC 404 (537)
Q Consensus 325 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 404 (537)
++.+...+..|.......|.+++|..+++.+.+..+. +......++.++.+.+++++|+..+++.....+. +......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 4556788888888888888888888888888876433 5556677788888888888888888888887665 7777788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHh
Q 047648 405 LIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQ 484 (537)
Q Consensus 405 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 484 (537)
+..++...|++++|..+|+++...+ +.+..++..+..++...|+.++|...|+++++.. .|....|+.++
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~----~~~~~~~~~~~----- 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI----GDGARKLTRRL----- 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh----CcchHHHHHHH-----
Confidence 8888888888888888888888743 4457888888888888888888888888887644 23334444443
Q ss_pred cCCHHHHHHHHHHHH
Q 047648 485 KGKLEDANGLLNELL 499 (537)
Q Consensus 485 ~g~~~~A~~~~~~~~ 499 (537)
++...-..+++++.
T Consensus 230 -~~~~~~~~~~~~~~ 243 (694)
T PRK15179 230 -VDLNADLAALRRLG 243 (694)
T ss_pred -HHHHHHHHHHHHcC
Confidence 33344445555554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.1e-05 Score=78.60 Aligned_cols=185 Identities=12% Similarity=0.048 Sum_probs=141.4
Q ss_pred CCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHH
Q 047648 290 IAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNT 369 (537)
Q Consensus 290 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 369 (537)
.+.++..+..|.....+.|.+++|..+++.+.+.. +-+......+...+.+.+++++|....++.....+. +......
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence 45578899999999999999999999999999853 334567788899999999999999999999998655 7778888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC
Q 047648 370 LIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGK 449 (537)
Q Consensus 370 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 449 (537)
+..++.+.|++++|..+|+++...++. +..++..+...+...|+.++|...|++..+.. .+....|+.++. +
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~~------~ 231 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRLV------D 231 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHHH------H
Confidence 999999999999999999999985543 68899999999999999999999999999873 455566655442 2
Q ss_pred hHHHHHHHHHHHH-chhcCCCCCHHHHHHHHHHHHh
Q 047648 450 SKKAVSLLDEMFK-MEKEKKWPNIVTYNVLIKGFCQ 484 (537)
Q Consensus 450 ~~~A~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~ 484 (537)
...-..++++.-- -...+.+..+.+...++.-|.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (694)
T PRK15179 232 LNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGR 267 (694)
T ss_pred HHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhh
Confidence 3333444444421 1122223334455555555544
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.3e-05 Score=70.38 Aligned_cols=140 Identities=16% Similarity=0.120 Sum_probs=94.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 047648 338 GFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEG 417 (537)
Q Consensus 338 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 417 (537)
.+...|+++.|+..++.+...-+ -|+..+....+.+.+.++.++|.+.+++++...+. .....-.+.+++.+.|++.+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHH
Confidence 34456777777777777666533 25566666677777777777777777777775332 25555666777777777777
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047648 418 VRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNE 497 (537)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 497 (537)
|+.+++...... +.|+..|..|.++|...|+..++.....+ .|...|++++|+..+..
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE---------------------~~~~~G~~~~A~~~l~~ 450 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE---------------------GYALAGRLEQAIIFLMR 450 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH---------------------HHHhCCCHHHHHHHHHH
Confidence 777777777654 56677777777777777777666655443 34556777777777777
Q ss_pred HHHc
Q 047648 498 LLEK 501 (537)
Q Consensus 498 ~~~~ 501 (537)
..+.
T Consensus 451 A~~~ 454 (484)
T COG4783 451 ASQQ 454 (484)
T ss_pred HHHh
Confidence 7664
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.6e-07 Score=53.76 Aligned_cols=32 Identities=41% Similarity=0.881 Sum_probs=22.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047648 467 KKWPNIVTYNVLIKGFCQKGKLEDANGLLNEL 498 (537)
Q Consensus 467 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 498 (537)
|+.||..+|++|+.+|++.|+.++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45677777777777777777777777777666
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.7e-05 Score=77.57 Aligned_cols=255 Identities=13% Similarity=0.072 Sum_probs=156.5
Q ss_pred ChHHHHhhhccCCCCCCC--CCChH-----HHHHHHhcCCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCch
Q 047648 8 TIEDITELIRNHHWSKLK--NTDPN-----TVILQLFNSDADPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYP 80 (537)
Q Consensus 8 ~~~~~~~~~~~~~w~~~~--~~~~~-----~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (537)
+.+.|..++....|.... +-+|. .-+.......++++.|...+...++. +|.....|..+...+...+++.
T Consensus 5 ~~~~~~~~~~ee~~~r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~ 82 (906)
T PRK14720 5 DIDKLTSLLNEEKWTRADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLN 82 (906)
T ss_pred hHHHHHHHhhhhhhhhcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchh
Confidence 567788888888998754 33322 22334555778999999999988876 4455555665666777888877
Q ss_pred HHHHH--HHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHH
Q 047648 81 KIRSF--LHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLL 158 (537)
Q Consensus 81 ~a~~l--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 158 (537)
++..+ +.......+..-+.-+...+... +.+..++-.++.+|-+.|+.++|.++++++++.+ +.|..+.|.+.
T Consensus 83 ~~~lv~~l~~~~~~~~~~~ve~~~~~i~~~----~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~A 157 (906)
T PRK14720 83 DSNLLNLIDSFSQNLKWAIVEHICDKILLY----GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLA 157 (906)
T ss_pred hhhhhhhhhhcccccchhHHHHHHHHHHhh----hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHH
Confidence 76554 22222222222223333334332 4455677788889999999999999999998887 55788888888
Q ss_pred HHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCC
Q 047648 159 RALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIG 238 (537)
Q Consensus 159 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 238 (537)
..++.. ++++|.+++.+...+ +...+++..+.++|.++....+. +...+..+.+..... .
T Consensus 158 Y~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~~ki~~~--~- 217 (906)
T PRK14720 158 TSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFFLRIERKVLGH--R- 217 (906)
T ss_pred HHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHHHHHHHHHHhh--h-
Confidence 888888 888888888776653 55666777777777777765211 222222222222110 0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 047648 239 KMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLC 305 (537)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 305 (537)
|..--..++..+-..|-..++++++..+++.+.+.... |.....-++.+|.
T Consensus 218 ---------------~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 218 ---------------EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred ---------------ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 11112233444445555666666777777666665322 4444445555544
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=0.00017 Score=74.18 Aligned_cols=59 Identities=12% Similarity=0.161 Sum_probs=27.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 047648 261 TFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMM 321 (537)
Q Consensus 261 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 321 (537)
++..+..+|-+.|+.++|..+|+++.+.. +-|+...|.+...|... ++++|.+++.+++
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV 176 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI 176 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 44444444444445555555554444443 22444444444444444 4444444444443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00021 Score=66.53 Aligned_cols=200 Identities=14% Similarity=0.081 Sum_probs=141.0
Q ss_pred CHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHH
Q 047648 239 KMYKADAVFKDMVENG--ILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVAL 316 (537)
Q Consensus 239 ~~~~a~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 316 (537)
++.++...-+++...+ -.|+...+...+.+......-..+-.++.+..+. .......-..-.+...|++++|+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~---~~~aa~YG~A~~~~~~~~~d~A~~~ 328 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKR---GGLAAQYGRALQTYLAGQYDEALKL 328 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCc---cchHHHHHHHHHHHHhcccchHHHH
Confidence 3444444444444321 2345555555555544443333333333333331 1222233333456688999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 047648 317 RDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVL 396 (537)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 396 (537)
+..+.+.- +-|........+.+.+.++.++|.+.++++....+. .....-.+..+|.+.|++.+|..++++.....+.
T Consensus 329 l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~ 406 (484)
T COG4783 329 LQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE 406 (484)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Confidence 99988862 456666777788999999999999999999987433 2666777899999999999999999999987665
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 397 PDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 397 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
|+..|..|.++|...|+..++..-..+ .|...|+++.|...+..+.+
T Consensus 407 -dp~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 407 -DPNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred -CchHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHH
Confidence 999999999999999998877765543 56678899999999988875
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.0002 Score=61.26 Aligned_cols=139 Identities=17% Similarity=0.154 Sum_probs=69.2
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh----
Q 047648 301 INGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCK---- 376 (537)
Q Consensus 301 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 376 (537)
...|+..|++++|++...... +......=...+.+..+++-|...+++|.+.. +..+.+.|..++.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhcc
Confidence 345556666666665554411 11222222333445555566666666655431 34455555554442
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCh
Q 047648 377 EGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKS 450 (537)
Q Consensus 377 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 450 (537)
.+.+.+|.-+|++|-++ ..|++.+.+....++...|++++|..++++..... ..++.+...++.+-...|..
T Consensus 186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKD 257 (299)
T ss_pred chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCC
Confidence 23455555666665543 34455555555555556666666666666555543 33344444444444444443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00028 Score=59.85 Aligned_cols=189 Identities=11% Similarity=0.083 Sum_probs=128.2
Q ss_pred CCCHHHHHHHHHHHHH---CC-CCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHH
Q 047648 237 IGKMYKADAVFKDMVE---NG-ILPNEV-TFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLD 311 (537)
Q Consensus 237 ~~~~~~a~~~~~~~~~---~~-~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 311 (537)
..+.++..+++.++.. .| ..++.. .|..++-+....|+.+.|..+++++...- +-+...-..-..-+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 3556666666666653 23 444543 34556666777888888888888877652 222222111122344678888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047648 312 EAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSML 391 (537)
Q Consensus 312 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 391 (537)
+|+++++.+++.+ +.|..++..-+...-..|+--+|++-+....+. +..|...|.-+...|...|++++|.-.+++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 8999988888875 566677776666666777777888877777776 34488888889999999999999999998888
Q ss_pred hCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCC
Q 047648 392 DRGVLPDVSTYNCLIAGLSRE---GNVEGVRNIMNELVNNG 429 (537)
Q Consensus 392 ~~~~~p~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~ 429 (537)
-..+. ++..+..+...+... .+.+.+.++|.+.++..
T Consensus 182 l~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 182 LIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 76544 555566666555443 35667888888888764
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00045 Score=58.68 Aligned_cols=189 Identities=14% Similarity=0.138 Sum_probs=131.3
Q ss_pred ccCCHHHHHHHHHHHHhC---C-CCCChh-hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 047648 271 KDENISAAMKVFEEMGSH---G-IAAGVV-TYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLV 345 (537)
Q Consensus 271 ~~g~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 345 (537)
...+.++..+++..+... | ..++.. .|..++-+....|+.+.|..+++.+... ++-+...-..-.-.+-..|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhch
Confidence 346778888888877542 3 334432 3455566677888888888888888775 232333333333345567888
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047648 346 EKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNEL 425 (537)
Q Consensus 346 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 425 (537)
++|.++++.+.+.++. |..++.-=+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 8888888888877633 6667766666666777777888888887776 4448888888888888888888888888888
Q ss_pred HHCCCCCChHHHHHHHHHHHhcC---ChHHHHHHHHHHHHc
Q 047648 426 VNNGMRAGLVTYNILVGALCKDG---KSKKAVSLLDEMFKM 463 (537)
Q Consensus 426 ~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~ 463 (537)
+-.. |.++..+..+.+.+.-.| +.+.|++.|.+++++
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 8764 555666666766655444 466788888888763
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.8e-05 Score=62.34 Aligned_cols=98 Identities=13% Similarity=0.078 Sum_probs=68.8
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 047648 364 VITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGA 443 (537)
Q Consensus 364 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 443 (537)
......+...+...|++++|...++.+...++. +...+..+...+...|++++|..++++..+.+ +.+...+..+..+
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 344555666677777777777777777765443 66677777777777777777777777776654 4456666667777
Q ss_pred HHhcCChHHHHHHHHHHHHc
Q 047648 444 LCKDGKSKKAVSLLDEMFKM 463 (537)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~~ 463 (537)
+...|++++|.+.|+.+++.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777777653
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.0044 Score=62.27 Aligned_cols=437 Identities=14% Similarity=0.055 Sum_probs=212.3
Q ss_pred hHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHH
Q 047648 43 PVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDML 122 (537)
Q Consensus 43 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 122 (537)
-..|+.-....+++.+..+...++.++.. .+.|+.++|..+++..-..+ +.+..+...+
T Consensus 25 fkkal~~~~kllkk~Pn~~~a~vLkaLsl--~r~gk~~ea~~~Le~~~~~~-------------------~~D~~tLq~l 83 (932)
T KOG2053|consen 25 FKKALAKLGKLLKKHPNALYAKVLKALSL--FRLGKGDEALKLLEALYGLK-------------------GTDDLTLQFL 83 (932)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHH--HHhcCchhHHHHHhhhccCC-------------------CCchHHHHHH
Confidence 35577777777776443333333333322 25666666666555443331 3455677777
Q ss_pred HHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-C
Q 047648 123 MLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAG-K 201 (537)
Q Consensus 123 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~ 201 (537)
-.+|.+.|+.++|+.+|++.... -|+......+..++++.+.+.+-.++--++.+. ++-+...|=++++.+...- .
T Consensus 84 ~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~ 160 (932)
T KOG2053|consen 84 QNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFS 160 (932)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccC
Confidence 77788888888888888887764 355666666677777777665544444444333 2224444444555444322 2
Q ss_pred hhH---------HHHHHHHHHhCC-CCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHh
Q 047648 202 LNK---------ASDIMEDMKSLG-VSPKVVTYNILIDGYCKKGGIGKMYKADAVFKD-MVENGILPNEVTFNTLIDGFC 270 (537)
Q Consensus 202 ~~~---------a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~-~~~~~~~p~~~~~~~l~~~~~ 270 (537)
.+. |.+.++.+.+.+ .--+..-.......+.. .+.+++|++++.. ..+.-...+...-+.-+..+.
T Consensus 161 ~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~---~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk 237 (932)
T KOG2053|consen 161 ENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILEL---QGKYQEALEFLAITLAEKLTSANLYLENKKLDLLK 237 (932)
T ss_pred CcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHh---cccHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 221 344445554432 11122222233333444 5667777777632 323222223333345566666
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH----------------hCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 047648 271 KDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLC----------------VDGKLDEAVALRDEMMASGLKPNVVTSNA 334 (537)
Q Consensus 271 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 334 (537)
..+++.+..++-.++...|. |. |...+..+. ..+..+...+...+..... ....|-+
T Consensus 238 ~l~~w~~l~~l~~~Ll~k~~--Dd--y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA 310 (932)
T KOG2053|consen 238 LLNRWQELFELSSRLLEKGN--DD--YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLA 310 (932)
T ss_pred HhcChHHHHHHHHHHHHhCC--cc--hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHH
Confidence 77777777777777766542 21 322222111 1111222222222222210 1112222
Q ss_pred HHHHHH---hcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHH---HHHHHH
Q 047648 335 LINGFC---KKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLP--DVS---TYNCLI 406 (537)
Q Consensus 335 ll~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~---~~~~l~ 406 (537)
-+.+.. .-|+.+++...|-+ +-|..| .+..=+..|...=..+.-..++.......... |.. -+...+
T Consensus 311 ~lel~kr~~~~gd~ee~~~~y~~--kfg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l 385 (932)
T KOG2053|consen 311 RLELDKRYKLIGDSEEMLSYYFK--KFGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVL 385 (932)
T ss_pred HHHHHHHhcccCChHHHHHHHHH--HhCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHH
Confidence 222222 23555554433322 122121 23333333443334444455555554331110 110 122222
Q ss_pred HHHHhcC-----CHHHHHHHHHHHHH---CC------CCCCh---------HHHHHHHHHHHhcCChH---HHHHHHHHH
Q 047648 407 AGLSREG-----NVEGVRNIMNELVN---NG------MRAGL---------VTYNILVGALCKDGKSK---KAVSLLDEM 460 (537)
Q Consensus 407 ~~~~~~~-----~~~~a~~~~~~~~~---~~------~~~~~---------~~~~~l~~~~~~~g~~~---~A~~~~~~~ 460 (537)
..-.-.| ..+....++++... .| .-|+. -+.+.|++.+-+.++.. +|+-+++..
T Consensus 386 ~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~g 465 (932)
T KOG2053|consen 386 LLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENG 465 (932)
T ss_pred HHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 2222233 23344444433332 12 22232 23367788888888865 555566655
Q ss_pred HHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCc
Q 047648 461 FKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMMEKGFI 523 (537)
Q Consensus 461 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~ 523 (537)
... .+-|..+--.+++.|.-.|-...|.++|+.+--+.+.-|...|.. .+.+...|+.
T Consensus 466 lt~----s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~-~~~~~t~g~~ 523 (932)
T KOG2053|consen 466 LTK----SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLI-FRRAETSGRS 523 (932)
T ss_pred hhc----CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHH-HHHHHhcccc
Confidence 432 234666666788888888999999999998876666655443322 2334444443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0073 Score=60.77 Aligned_cols=389 Identities=13% Similarity=0.067 Sum_probs=217.7
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHH
Q 047648 40 DADPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIII 119 (537)
Q Consensus 40 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (537)
.+..+.|+..++..-.. -++|..+...+-+.|...+++++|..+++..... .|+....
T Consensus 56 ~gk~~ea~~~Le~~~~~--~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--------------------~P~eell 113 (932)
T KOG2053|consen 56 LGKGDEALKLLEALYGL--KGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--------------------YPSEELL 113 (932)
T ss_pred hcCchhHHHHHhhhccC--CCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--------------------CCcHHHH
Confidence 34556677666665443 2348888899999999999999999998887765 2346666
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCC-Ch---------hHHHHHHHHHHhCC-CCCCHHH
Q 047648 120 DMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEG-KF---------EDVEYVYKEMKRRR-IELNLDS 188 (537)
Q Consensus 120 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~---------~~a~~~~~~~~~~~-~~~~~~~ 188 (537)
..+..+|++.+++.+-.+.--++-+. ++.+...+=++++...... .. .-|...++.+.+.+ .-.+..-
T Consensus 114 ~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE 192 (932)
T KOG2053|consen 114 YHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAE 192 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHH
Confidence 77788899888876654444444332 3445555555566554432 12 23566667766654 2223333
Q ss_pred HHHHHHHHHhcCChhHHHHHHH-HHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHH----H
Q 047648 189 FNFVLNGLCKAGKLNKASDIME-DMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTF----N 263 (537)
Q Consensus 189 ~~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~----~ 263 (537)
.......+...|++++|.+++. ...+.-...+...-+.-+..+.. .+++.+..++-.++...|.. |-.+| .
T Consensus 193 ~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~---l~~w~~l~~l~~~Ll~k~~D-dy~~~~~sv~ 268 (932)
T KOG2053|consen 193 IILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKL---LNRWQELFELSSRLLEKGND-DYKIYTDSVF 268 (932)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH---hcChHHHHHHHHHHHHhCCc-chHHHHHHHH
Confidence 3444455667899999999994 44444333444555567777777 89999999999999988643 21111 1
Q ss_pred HHHH-H--------HhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH---hCCCHHHHHHHHHHHHHcCCCC----
Q 047648 264 TLID-G--------FCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLC---VDGKLDEAVALRDEMMASGLKP---- 327 (537)
Q Consensus 264 ~l~~-~--------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~~~~~---- 327 (537)
.++. . +...+..+...+..++..... ....|-+-+.++. .-|+.+++...|-+-.. ..|
T Consensus 269 klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg--~kpcc~~ 343 (932)
T KOG2053|consen 269 KLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEMLSYYFKKFG--DKPCCAI 343 (932)
T ss_pred HHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHHHHHHHHhC--CCcHhHh
Confidence 1111 1 111223333333333333221 2223444444433 44777775544432211 011
Q ss_pred CHHH---------HHHHHHHH------------------------HhcC-----CHHHHHHHHHHHH---HcC------C
Q 047648 328 NVVT---------SNALINGF------------------------CKKK-----LVEKARVLFDDIS---EQG------L 360 (537)
Q Consensus 328 ~~~~---------~~~ll~~~------------------------~~~~-----~~~~a~~~~~~~~---~~~------~ 360 (537)
|... ...++..+ .-.| .-+....++.+.. ++| .
T Consensus 344 Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~l 423 (932)
T KOG2053|consen 344 DLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDL 423 (932)
T ss_pred hHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccc
Confidence 1111 11111111 1122 1223333333332 222 2
Q ss_pred CCCHh---------HHHHHHHHHHhcCChH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047648 361 SPSVI---------TYNTLIDAYCKEGRME---DAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNN 428 (537)
Q Consensus 361 ~~~~~---------~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 428 (537)
-|+.. +-+.|+..+-+.++.. +|+-+++........ |..+--.+++.|+-.|-+..|.++|..+--.
T Consensus 424 l~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~h-nf~~KLlLiriY~~lGa~p~a~~~y~tLdIK 502 (932)
T KOG2053|consen 424 LPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPH-NFQTKLLLIRIYSYLGAFPDAYELYKTLDIK 502 (932)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCc-cHHHHHHHHHHHHHhcCChhHHHHHHhcchH
Confidence 22222 2356778888888755 455566666655433 6667778889999999999999999988766
Q ss_pred CCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 429 GMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 429 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
.+..|..-|. +...+...|++..+...+.....
T Consensus 503 ~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lk 535 (932)
T KOG2053|consen 503 NIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLK 535 (932)
T ss_pred HhhhccchHH-HHHHHHhcccchhHHHHHHHHHH
Confidence 5555543332 23344555666666666665554
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.25 E-value=8e-05 Score=69.93 Aligned_cols=123 Identities=17% Similarity=0.181 Sum_probs=82.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 047648 368 NTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKD 447 (537)
Q Consensus 368 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 447 (537)
..|+..+...++++.|..+++++.+.. |+ ....+++.+...++-.+|.+++.+.++.. +.+...+..-...+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 344555556677777777777777653 33 33446666666677777777777777653 44556666666677777
Q ss_pred CChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047648 448 GKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELL 499 (537)
Q Consensus 448 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 499 (537)
++++.|+++.+++++.. +-+..+|..|..+|...|++++|+..++.+.
T Consensus 248 ~~~~lAL~iAk~av~ls----P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELS----PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhC----chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77777777777776532 3355677778888888888888877777665
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00011 Score=59.67 Aligned_cols=86 Identities=14% Similarity=0.159 Sum_probs=35.4
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC
Q 047648 372 DAYCKEGRMEDAFAMRNSMLDRGVLPDV--STYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGK 449 (537)
Q Consensus 372 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 449 (537)
..+...|++++|...|+.+......|.. .....+...+...|++++|+..++..... ......+....+.|.+.|+
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~ 133 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGD 133 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCC
Confidence 3444445555555555554444322111 12223344444444555544444332211 1222333444444444444
Q ss_pred hHHHHHHHHH
Q 047648 450 SKKAVSLLDE 459 (537)
Q Consensus 450 ~~~A~~~~~~ 459 (537)
+++|+..|+.
T Consensus 134 ~~~A~~~y~~ 143 (145)
T PF09976_consen 134 YDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHH
Confidence 4444444443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00015 Score=58.81 Aligned_cols=128 Identities=13% Similarity=0.139 Sum_probs=96.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hHHHHHH
Q 047648 365 ITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPD--VSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAG--LVTYNIL 440 (537)
Q Consensus 365 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l 440 (537)
..|..++..+ ..++...+...++.+.+....-. ......+...+...|++++|...|+.+......|+ ......+
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 3455555555 48888999999999988744311 23444566778899999999999999998752232 2345567
Q ss_pred HHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047648 441 VGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNEL 498 (537)
Q Consensus 441 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 498 (537)
...+...|++++|+..++... +.......+.....+|.+.|++++|...|+..
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~-----~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIP-----DEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhcc-----CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 888999999999999997642 12335667788889999999999999999875
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00015 Score=68.18 Aligned_cols=116 Identities=15% Similarity=0.154 Sum_probs=51.4
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHH
Q 047648 303 GLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMED 382 (537)
Q Consensus 303 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 382 (537)
.+...++++.|+++++++.+.. |+ ....++..+...++..+|.+++++..+..+. +...+..-...+.+.++++.
T Consensus 178 ~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k~~~~l 252 (395)
T PF09295_consen 178 YLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSKKKYEL 252 (395)
T ss_pred HHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHH
Confidence 3334444555555555554432 22 2223344444444444455554444433221 33334444444444555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047648 383 AFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNE 424 (537)
Q Consensus 383 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 424 (537)
|+.+.+++.+..+. +-.+|..|..+|...|+++.|+..++.
T Consensus 253 AL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 253 ALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 55555555443222 333455555555555555555544443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.09 E-value=7.2e-06 Score=47.72 Aligned_cols=33 Identities=48% Similarity=1.007 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 047648 474 TYNVLIKGFCQKGKLEDANGLLNELLEKGLIPN 506 (537)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 506 (537)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 689999999999999999999999999999987
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.06 E-value=7.9e-06 Score=47.17 Aligned_cols=33 Identities=33% Similarity=0.607 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 047648 473 VTYNVLIKGFCQKGKLEDANGLLNELLEKGLIP 505 (537)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 505 (537)
.+|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578999999999999999999999999999887
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0002 Score=67.52 Aligned_cols=90 Identities=12% Similarity=-0.012 Sum_probs=50.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCh
Q 047648 371 IDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKS 450 (537)
Q Consensus 371 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 450 (537)
...+...|+++.|+..++++++..+. +...|..+..+|...|++++|+..++++++.. +.+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCH
Confidence 33444556666666666666655443 45555555555666666666666666665543 33445555555566666666
Q ss_pred HHHHHHHHHHHH
Q 047648 451 KKAVSLLDEMFK 462 (537)
Q Consensus 451 ~~A~~~~~~~~~ 462 (537)
++|+..|+++++
T Consensus 87 ~eA~~~~~~al~ 98 (356)
T PLN03088 87 QTAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHHH
Confidence 666666665554
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0001 Score=64.25 Aligned_cols=99 Identities=19% Similarity=0.203 Sum_probs=52.4
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHH
Q 047648 410 SREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLE 489 (537)
Q Consensus 410 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 489 (537)
.+.+++++|+..|.+.++.. +.|..-|..-..+|++.|.++.|++-.+.++.++ +....+|..|..+|...|+++
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD----p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID----PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC----hHHHHHHHHHHHHHHccCcHH
Confidence 44555555555555555543 3344444555555555555555555555555432 123445555555555555555
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHH
Q 047648 490 DANGLLNELLEKGLIPNQTTYQIVRE 515 (537)
Q Consensus 490 ~A~~~~~~~~~~g~~p~~~~~~~l~~ 515 (537)
+|++.|++.++ +.|+..+|..=++
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHHHHH
Confidence 55555555555 5555555544443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.4e-05 Score=46.41 Aligned_cols=33 Identities=33% Similarity=0.862 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 047648 188 SFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPK 220 (537)
Q Consensus 188 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 220 (537)
+||.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 355555555555555555555555555555554
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00018 Score=53.26 Aligned_cols=93 Identities=19% Similarity=0.174 Sum_probs=51.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHH
Q 047648 403 NCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGF 482 (537)
Q Consensus 403 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 482 (537)
..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|.+.++...+.. +.+..++..+...+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~~~~ 78 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD----PDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CcchhHHHHHHHHH
Confidence 334444555566666666666555542 2233455555556666666666666666655422 22334555666666
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 047648 483 CQKGKLEDANGLLNELLE 500 (537)
Q Consensus 483 ~~~g~~~~A~~~~~~~~~ 500 (537)
...|++++|...+++..+
T Consensus 79 ~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 79 YKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHhHHHHHHHHHHHHc
Confidence 666666666666666554
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.7e-05 Score=45.68 Aligned_cols=32 Identities=34% Similarity=0.633 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 047648 188 SFNFVLNGLCKAGKLNKASDIMEDMKSLGVSP 219 (537)
Q Consensus 188 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 219 (537)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0006 Score=53.08 Aligned_cols=100 Identities=13% Similarity=0.049 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHH
Q 047648 401 TYNCLIAGLSREGNVEGVRNIMNELVNNGM--RAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVL 478 (537)
Q Consensus 401 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 478 (537)
++..++..+...|++++|...|.++..... +.....+..+..++.+.|+++.|.+.|+.+....+. .+....++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~ 82 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK-SPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC-CCcccHHHHHH
Confidence 445566666777777777777777766421 111345556777777777777777777777653211 11124556677
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 047648 479 IKGFCQKGKLEDANGLLNELLEK 501 (537)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~~~~~ 501 (537)
..++...|++++|...++++.+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 77777778888888888877774
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00026 Score=64.36 Aligned_cols=145 Identities=11% Similarity=0.090 Sum_probs=87.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 047648 365 ITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAG-LSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGA 443 (537)
Q Consensus 365 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 443 (537)
.+|..++...-+.+..+.|..+|.+..+.+. .+..+|...... +...++.+.|.++|+...+. ++.+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 3566666766677777777777777764422 133444443333 22345566677777777765 35566677777777
Q ss_pred HHhcCChHHHHHHHHHHHHchhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 047648 444 LCKDGKSKKAVSLLDEMFKMEKEKKWPN---IVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEM 517 (537)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 517 (537)
+.+.|+.+.|+.+|++++. .+.++ ...|...+..=.+.|+.+.+.++.+++.+ ..|+...+..+.+-|
T Consensus 80 l~~~~d~~~aR~lfer~i~----~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 80 LIKLNDINNARALFERAIS----SLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNSLELFSDRY 150 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCC----TSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHH----hcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHHHHHHHh
Confidence 7777777777777777753 12222 24777777777777888888888877777 455555555555444
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00078 Score=56.46 Aligned_cols=130 Identities=13% Similarity=0.095 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 047648 365 ITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPD--VSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVG 442 (537)
Q Consensus 365 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 442 (537)
..+..+...+...|++++|...+++..+....+. ...+..+...+.+.|++++|...+++..+.. +.+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 3455555556666666666666666655432221 2455555566666666666666666665542 223444555555
Q ss_pred HHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 047648 443 ALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMMEKGF 522 (537)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 522 (537)
++...|+...+..-++.+.. .+++|.+++++... ..|+. +..++..+...|.
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~------------------------~~~~A~~~~~~a~~--~~p~~--~~~~~~~~~~~~~ 166 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEA------------------------LFDKAAEYWKQAIR--LAPNN--YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHcCChHhHhhCHHHHHH------------------------HHHHHHHHHHHHHh--hCchh--HHHHHHHHHhcCc
Confidence 55555555444433333321 15677777777776 33554 6666666666665
Q ss_pred c
Q 047648 523 I 523 (537)
Q Consensus 523 ~ 523 (537)
.
T Consensus 167 ~ 167 (172)
T PRK02603 167 S 167 (172)
T ss_pred c
Confidence 3
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00025 Score=66.99 Aligned_cols=119 Identities=16% Similarity=0.236 Sum_probs=56.7
Q ss_pred CCChhhHHHHHHHHHhCCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHH
Q 047648 148 KSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRR--RIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYN 225 (537)
Q Consensus 148 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 225 (537)
+.+......++..+....+.+++..++-..... ....-..|..++++.|.+.|..+.++.++..=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 334444444455444444455555554444433 111222333455555555555555555555555555555555555
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 047648 226 ILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGF 269 (537)
Q Consensus 226 ~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 269 (537)
.+|..+.+ .|++..|.++...|...+...+..|+...+.+|
T Consensus 143 ~Lmd~fl~---~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~ 183 (429)
T PF10037_consen 143 LLMDHFLK---KGNYKSAAKVATEMMLQEEFDNPSTQALALYSC 183 (429)
T ss_pred HHHHHHhh---cccHHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 55555555 455555555555555444444444444433333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00034 Score=58.40 Aligned_cols=60 Identities=8% Similarity=-0.057 Sum_probs=24.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 368 NTLIDAYCKEGRMEDAFAMRNSMLDRGVLP--DVSTYNCLIAGLSREGNVEGVRNIMNELVN 427 (537)
Q Consensus 368 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 427 (537)
..++..+...|++++|...+++.......+ ...++..+...+...|++++|+..+++...
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333444444444444444444444332111 112344444444444444444444444443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00026 Score=66.81 Aligned_cols=124 Identities=15% Similarity=0.105 Sum_probs=90.5
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH
Q 047648 254 GILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSH--GIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVT 331 (537)
Q Consensus 254 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 331 (537)
+.+.+......++..+....+++.+..++.+.... ....-..|..++++.|.+.|..+.++.++..=..-|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44556677777777777777888888888777654 2222344556888888888888888888888888888888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc
Q 047648 332 SNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKE 377 (537)
Q Consensus 332 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 377 (537)
++.+++.+.+.|++..|.++...|..++...+..++..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 8888888888888888888888877766555666665555554443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.023 Score=52.87 Aligned_cols=440 Identities=14% Similarity=0.132 Sum_probs=244.9
Q ss_pred hcCCCChHHHHHHHHHHhhcCCCCCCH---H-HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCC
Q 047648 37 FNSDADPVLILRYFCWSTKELRASHSL---L-LTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSL 112 (537)
Q Consensus 37 ~~~~~~~~~a~~~~~~~~~~~~~~~~~---~-~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~ 112 (537)
+..+++-..|-.+|..+.+.....+.. + .-+.+++++--. +.+.....+..+.+.-...
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~s---------------- 78 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGKS---------------- 78 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCc----------------
Confidence 344455677888888887653222211 1 235566666543 3444444444444331111
Q ss_pred CchHHHHHHHHHHHHHcCCchHHHHHHHHHhhC--CC------------CCChhhHHHHHHHHHhCCChhHHHHHHHHHH
Q 047648 113 CRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDY--GL------------KSSVLSCNQLLRALVKEGKFEDVEYVYKEMK 178 (537)
Q Consensus 113 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 178 (537)
+....|. .-...+.+.+.+|++.+...... +. -+|...=+..+..+.+.|++.+++.+++++.
T Consensus 79 -~~l~LF~--~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~ 155 (549)
T PF07079_consen 79 -AYLPLFK--ALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRII 155 (549)
T ss_pred -hHHHHHH--HHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 1112222 22356788888888887766543 11 1122333667788899999999999999887
Q ss_pred hCC----CCCCHHHHHHHHHHHHhc--------CCh-------hHHHHHHHHHHhC------CCCCChhhHHHHHHHHhc
Q 047648 179 RRR----IELNLDSFNFVLNGLCKA--------GKL-------NKASDIMEDMKSL------GVSPKVVTYNILIDGYCK 233 (537)
Q Consensus 179 ~~~----~~~~~~~~~~l~~~~~~~--------g~~-------~~a~~~~~~~~~~------~~~~~~~~~~~ll~~~~~ 233 (537)
.+= ..-+..+|+.++-.+++. ... +.+.-+..+|... .+-|-......++....-
T Consensus 156 ~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi 235 (549)
T PF07079_consen 156 ERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFI 235 (549)
T ss_pred HHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHh
Confidence 643 347899999866666542 111 2222223333221 123444444444444433
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHHHhCCCC----CChhhHHHHHHHHHhCC
Q 047648 234 KGGIGKMYKADAVFKDMVENGILPNEVT-FNTLIDGFCKDENISAAMKVFEEMGSHGIA----AGVVTYNSLINGLCVDG 308 (537)
Q Consensus 234 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~ 308 (537)
.. ..+..--.++++.-...-+.|+... ...+...+.+ +.+++..+.+.+....+. .-..++..++....+.+
T Consensus 236 ~p-~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~ 312 (549)
T PF07079_consen 236 VP-KERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQV 312 (549)
T ss_pred CC-HhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1222223334444334445555332 2334444444 556666655554432111 12457888888899999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHH-------HHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHhHHHHH---HHHH
Q 047648 309 KLDEAVALRDEMMASGLKPNVVTS-------NALINGFCK----KKLVEKARVLFDDISEQGLSPSVITYNTL---IDAY 374 (537)
Q Consensus 309 ~~~~A~~~~~~~~~~~~~~~~~~~-------~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l---~~~~ 374 (537)
+...|.+.+.-+..- .|+...- ..+-+..+. .-+...-..+++.+...++. ....-..| +.-+
T Consensus 313 ~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~l 389 (549)
T PF07079_consen 313 QTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHL 389 (549)
T ss_pred hHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHH
Confidence 999999888877653 3433211 112222221 11223334455555544333 11122223 3335
Q ss_pred HhcCC-hHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCh----HHHHHHHH
Q 047648 375 CKEGR-MEDAFAMRNSMLDRGVLPDVSTYN----CLIAGLSR---EGNVEGVRNIMNELVNNGMRAGL----VTYNILVG 442 (537)
Q Consensus 375 ~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~----~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~ 442 (537)
-+.|. -++|+++++.+++-... |...-+ .+-..|.. ...+.+-..+-+-+.+.|++|-. ..-|.|.+
T Consensus 390 W~~g~~dekalnLLk~il~ft~y-D~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaD 468 (549)
T PF07079_consen 390 WEIGQCDEKALNLLKLILQFTNY-DIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLAD 468 (549)
T ss_pred HhcCCccHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHH
Confidence 56666 88899999988864322 433322 23334433 34566667777777777877643 34455544
Q ss_pred --HHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 047648 443 --ALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIV 513 (537)
Q Consensus 443 --~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 513 (537)
.+...|++.++.-.-.-..+ +.|++.+|..++-++....++++|..++..+. |+..+++.=
T Consensus 469 AEyLysqgey~kc~~ys~WL~~-----iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP-----~n~~~~dsk 531 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTK-----IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP-----PNERMRDSK 531 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHH-----hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC-----CchhhHHHH
Confidence 36778999998766555543 46899999999999999999999999999994 466665543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00031 Score=51.94 Aligned_cols=94 Identities=19% Similarity=0.191 Sum_probs=61.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 047648 367 YNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCK 446 (537)
Q Consensus 367 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 446 (537)
+..+...+...|++++|...++++.+.... +...+..+...+...+++++|.+.++...+.. +.+..++..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 344555666677777777777777665332 34556666666777777777777777766653 3344566667777777
Q ss_pred cCChHHHHHHHHHHHH
Q 047648 447 DGKSKKAVSLLDEMFK 462 (537)
Q Consensus 447 ~g~~~~A~~~~~~~~~ 462 (537)
.|+++.|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 7777777777776653
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0042 Score=49.59 Aligned_cols=92 Identities=4% Similarity=-0.141 Sum_probs=62.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC
Q 047648 369 TLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDG 448 (537)
Q Consensus 369 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 448 (537)
.+..-+...|++++|..+|+.+....+. +..-|..|.-++...|++++|+..|....... +.++..+-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 3444556677777777777777665544 55566666767777777777777777776665 455666666777777777
Q ss_pred ChHHHHHHHHHHHH
Q 047648 449 KSKKAVSLLDEMFK 462 (537)
Q Consensus 449 ~~~~A~~~~~~~~~ 462 (537)
+.+.|++.|+.++.
T Consensus 118 ~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 118 NVCYAIKALKAVVR 131 (157)
T ss_pred CHHHHHHHHHHHHH
Confidence 77777777776665
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0036 Score=50.67 Aligned_cols=158 Identities=15% Similarity=0.148 Sum_probs=106.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 047648 335 LINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGN 414 (537)
Q Consensus 335 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 414 (537)
+..+..+.=+.+...+-..+-. ...|+...-..|..+....|++.+|...|++...--..-|......+.++....++
T Consensus 62 ~~~a~~q~ldP~R~~Rea~~~~--~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~ 139 (251)
T COG4700 62 LLMALQQKLDPERHLREATEEL--AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQE 139 (251)
T ss_pred HHHHHHHhcChhHHHHHHHHHH--hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhcc
Confidence 3344444445554443333222 24566666777888888888888888888888765555577778888888888888
Q ss_pred HHHHHHHHHHHHHCCCC-CChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047648 415 VEGVRNIMNELVNNGMR-AGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANG 493 (537)
Q Consensus 415 ~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 493 (537)
+..|...++.+.+.... -++.....+...+...|.+..|...|+.++. ..|+...--.....+.++|+.+++..
T Consensus 140 ~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~-----~ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 140 FAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAIS-----YYPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHH-----hCCCHHHHHHHHHHHHHhcchhHHHH
Confidence 88888888888776310 1234455677788888888888888888864 35666665566666777887776655
Q ss_pred HHHHHH
Q 047648 494 LLNELL 499 (537)
Q Consensus 494 ~~~~~~ 499 (537)
-+....
T Consensus 215 q~~~v~ 220 (251)
T COG4700 215 QYVAVV 220 (251)
T ss_pred HHHHHH
Confidence 444443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0015 Score=64.46 Aligned_cols=144 Identities=15% Similarity=0.102 Sum_probs=86.8
Q ss_pred CCCCHhHHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHH
Q 047648 360 LSPSVITYNTLIDAYCKE-----GRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSRE--------GNVEGVRNIMNELV 426 (537)
Q Consensus 360 ~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~ 426 (537)
.+.+...|...+++.... +....|..+|++.++..+. ....|..+..++... .+...+.+..++..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 344566666666654322 2255677777777765433 334444433333221 11233344444433
Q ss_pred HC-CCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 047648 427 NN-GMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIP 505 (537)
Q Consensus 427 ~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p 505 (537)
.. ..+.+...|..+.-.....|++++|...+++++++. |+...|..+...+...|++++|.+.+++... +.|
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~-----ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P 484 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE-----MSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRP 484 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCC
Confidence 32 123445677777666667788888888888887643 5777888888888888888888888888877 556
Q ss_pred CHHhHH
Q 047648 506 NQTTYQ 511 (537)
Q Consensus 506 ~~~~~~ 511 (537)
...||.
T Consensus 485 ~~pt~~ 490 (517)
T PRK10153 485 GENTLY 490 (517)
T ss_pred CCchHH
Confidence 655554
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.008 Score=51.58 Aligned_cols=140 Identities=11% Similarity=0.025 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHH-----HHH
Q 047648 366 TYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTY-----NIL 440 (537)
Q Consensus 366 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----~~l 440 (537)
+.+.++.++.-.|.+.-....+.++++...+-++.....+++.-.+.|+.+.|..+|++..+..-..+.... ...
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 344455555556666666666666666555556666666666666666666666666655543222222222 222
Q ss_pred HHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHH
Q 047648 441 VGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQ 511 (537)
Q Consensus 441 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 511 (537)
...|.-++++..|...+.+++.++ +.|+...|.-.-++.-.|+..+|++.++.|++ ..|.+.+-+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D----~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~e 323 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD----PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHE 323 (366)
T ss_pred hhheecccchHHHHHHHhhccccC----CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhh
Confidence 233445556666666666665533 22444444444444445666667776666666 334444433
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00078 Score=56.23 Aligned_cols=140 Identities=11% Similarity=-0.012 Sum_probs=91.4
Q ss_pred hHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--ChHHHHHHHHHHHhcCChHHHHHH
Q 047648 380 MEDAFAMRNSMLDR-GVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRA--GLVTYNILVGALCKDGKSKKAVSL 456 (537)
Q Consensus 380 ~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~ 456 (537)
+..+...+..+.+. +..-....|..+...+...|++++|...|++.......+ ...++..+..++...|++++|++.
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 33444444455322 222235567788888889999999999999998763222 235788999999999999999999
Q ss_pred HHHHHHchhcCCCCCHHHHHHHHHHHH-------hcCCHHHHHHHHHHHHHc---CCCCCHHhHHHHHHHHHhcCCc
Q 047648 457 LDEMFKMEKEKKWPNIVTYNVLIKGFC-------QKGKLEDANGLLNELLEK---GLIPNQTTYQIVREEMMEKGFI 523 (537)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~~~A~~~~~~~~~~---g~~p~~~~~~~l~~~~~~~g~~ 523 (537)
+++++++. +....++..+...+. ..|++++|...+++.... .+..++.....+...+...|.+
T Consensus 95 ~~~Al~~~----~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 167 (168)
T CHL00033 95 YFQALERN----PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLKITGRF 167 (168)
T ss_pred HHHHHHhC----cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHhcCC
Confidence 99998743 234556666666666 788888666666554321 1223333334444445555543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0016 Score=57.35 Aligned_cols=121 Identities=17% Similarity=0.151 Sum_probs=87.7
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC---hHHHHHHHHHHHHc
Q 047648 387 RNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGK---SKKAVSLLDEMFKM 463 (537)
Q Consensus 387 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~ 463 (537)
++.-+..++. |...|..|...|...|+.+.|..-|.+..+.. ++++..+..+..++....+ ..++.++|++++..
T Consensus 145 Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~ 222 (287)
T COG4235 145 LETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL 222 (287)
T ss_pred HHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc
Confidence 3334444555 78888888888888888888888888888864 5667777777776654432 56788888888864
Q ss_pred hhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 047648 464 EKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVRE 515 (537)
Q Consensus 464 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 515 (537)
+ +-|+.+...|...+...|++.+|...|+.|++. -|....+..+++
T Consensus 223 D----~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie 268 (287)
T COG4235 223 D----PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIE 268 (287)
T ss_pred C----CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHH
Confidence 4 346777778888888899999999999999884 354444544443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.81 E-value=8e-05 Score=53.77 Aligned_cols=81 Identities=22% Similarity=0.270 Sum_probs=47.7
Q ss_pred cCCHHHHHHHHHHHHHCCCC-CChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 047648 412 EGNVEGVRNIMNELVNNGMR-AGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLED 490 (537)
Q Consensus 412 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 490 (537)
.|+++.|+.+++++.+.... ++...+-.+..+|.+.|++++|..++++ .+.. +.+....-.+..+|.+.|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~----~~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD----PSNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH----HCHHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC----CCCHHHHHHHHHHHHHhCCHHH
Confidence 46677777777777765321 1334444567777777777777777766 2211 1233444455677777777777
Q ss_pred HHHHHHH
Q 047648 491 ANGLLNE 497 (537)
Q Consensus 491 A~~~~~~ 497 (537)
|++++++
T Consensus 77 Ai~~l~~ 83 (84)
T PF12895_consen 77 AIKALEK 83 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 7777765
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0012 Score=51.39 Aligned_cols=20 Identities=25% Similarity=0.225 Sum_probs=7.8
Q ss_pred HHHHHhcCChHHHHHHHHHH
Q 047648 441 VGALCKDGKSKKAVSLLDEM 460 (537)
Q Consensus 441 ~~~~~~~g~~~~A~~~~~~~ 460 (537)
..++.+.|++++|.+.++++
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~ 102 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQV 102 (119)
T ss_pred HHHHHHhCChHHHHHHHHHH
Confidence 33333333333333333333
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.77 E-value=5.8e-05 Score=54.52 Aligned_cols=80 Identities=19% Similarity=0.259 Sum_probs=36.9
Q ss_pred CChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHH
Q 047648 378 GRMEDAFAMRNSMLDRGVL-PDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSL 456 (537)
Q Consensus 378 g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 456 (537)
|+++.|+.+++++.+..+. ++...+..+..++.+.|++++|..++++ .+.+ +.+....-.+..++.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4555555555555544321 1333333455555555555555555555 2111 11223333345555555555555555
Q ss_pred HHH
Q 047648 457 LDE 459 (537)
Q Consensus 457 ~~~ 459 (537)
|++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0026 Score=50.76 Aligned_cols=98 Identities=8% Similarity=-0.049 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHH
Q 047648 399 VSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVL 478 (537)
Q Consensus 399 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 478 (537)
....-.+...+...|++++|.++|+.+...+ +-+..-|-.|.-++-..|++++|+..|..+..+. +.|+..+-.+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~----~ddp~~~~~a 109 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK----IDAPQAPWAA 109 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----CCCchHHHHH
Confidence 3445556666788999999999999999876 5667788899999999999999999999998755 3577888899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 047648 479 IKGFCQKGKLEDANGLLNELLEK 501 (537)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~~~~~ 501 (537)
..++...|+.+.|.+.|+..+..
T Consensus 110 g~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 110 AECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999998874
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00042 Score=51.00 Aligned_cols=76 Identities=20% Similarity=0.313 Sum_probs=46.2
Q ss_pred HHHHHHHHcCCchHHHHHHHHHhhCCC-CCChhhHHHHHHHHHhCC--------ChhHHHHHHHHHHhCCCCCCHHHHHH
Q 047648 121 MLMLAYVKNMKPHLGFEAFKRAGDYGL-KSSVLSCNQLLRALVKEG--------KFEDVEYVYKEMKRRRIELNLDSFNF 191 (537)
Q Consensus 121 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~ 191 (537)
.-|..+...+++..-..+|+.+.+.|+ .|++.+|+.++.+.++.. +.-..+.+|..|+..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344455555777777777777777777 677777777777665542 12334555555555555555555555
Q ss_pred HHHHH
Q 047648 192 VLNGL 196 (537)
Q Consensus 192 l~~~~ 196 (537)
++..+
T Consensus 110 vl~~L 114 (120)
T PF08579_consen 110 VLGSL 114 (120)
T ss_pred HHHHH
Confidence 55544
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.032 Score=51.34 Aligned_cols=265 Identities=11% Similarity=-0.010 Sum_probs=146.5
Q ss_pred HHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 047648 121 MLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAG 200 (537)
Q Consensus 121 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 200 (537)
.....+.+..++.+|+..+..+++.. +.++..|..-+..+...|+++++.--.+.-.+.... ......-.-.++...+
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALS 131 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhH
Confidence 34567788889999999999999875 345667777777788888888887766655443211 1223333334444444
Q ss_pred ChhHHHHHHHH------------HH---hCC-CCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 047648 201 KLNKASDIMED------------MK---SLG-VSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNT 264 (537)
Q Consensus 201 ~~~~a~~~~~~------------~~---~~~-~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 264 (537)
+..+|.+.++. .. ... -+|.-.+|..+-.-|.-. .+++++|.++--..++..-. +......
T Consensus 132 ~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~--~~~~~~a~~ea~~ilkld~~-n~~al~v 208 (486)
T KOG0550|consen 132 DLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAF--LGDYDEAQSEAIDILKLDAT-NAEALYV 208 (486)
T ss_pred HHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhh--cccchhHHHHHHHHHhcccc-hhHHHHh
Confidence 44444444331 11 110 012223333333222221 57777777666555554211 2222222
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCChhh-------------HHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCCC
Q 047648 265 LIDGFCKDENISAAMKVFEEMGSHGIAAGVVT-------------YNSLINGLCVDGKLDEAVALRDEMMASG---LKPN 328 (537)
Q Consensus 265 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~ 328 (537)
-..++.-.++.+.+...|++....+ |+-.. +..-.+-..+.|++..|.+.|.+.+... ..++
T Consensus 209 rg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~n 286 (486)
T KOG0550|consen 209 RGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTN 286 (486)
T ss_pred cccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchh
Confidence 2233445677888888888776643 32211 1112234556777888888888777642 3344
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047648 329 VVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDR 393 (537)
Q Consensus 329 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 393 (537)
...|........+.|+..+|+.--+...+.+.. -...|-.-..++.-.++|++|.+-++...+.
T Consensus 287 aklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 287 AKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555666666667777777777777666654110 0112222233455567777777777776654
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00056 Score=59.80 Aligned_cols=98 Identities=20% Similarity=0.167 Sum_probs=78.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 047648 337 NGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVE 416 (537)
Q Consensus 337 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 416 (537)
.-+.+.+++.+|+..|.+.++..+. |++.|..-..+|.+.|.++.|++-.+..+..++. ...+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHH
Confidence 4467788999999999998887544 7777888888999999999999888888876443 4568889999999999999
Q ss_pred HHHHHHHHHHHCCCCCChHHHH
Q 047648 417 GVRNIMNELVNNGMRAGLVTYN 438 (537)
Q Consensus 417 ~a~~~~~~~~~~~~~~~~~~~~ 438 (537)
+|++.|++.++. .|+-.+|-
T Consensus 167 ~A~~aykKaLel--dP~Ne~~K 186 (304)
T KOG0553|consen 167 EAIEAYKKALEL--DPDNESYK 186 (304)
T ss_pred HHHHHHHhhhcc--CCCcHHHH
Confidence 999999888875 46655553
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00042 Score=50.99 Aligned_cols=79 Identities=23% Similarity=0.377 Sum_probs=58.1
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------ChhHHHHHHHHHHhCCCCCChhhHH
Q 047648 155 NQLLRALVKEGKFEDVEYVYKEMKRRRI-ELNLDSFNFVLNGLCKAG--------KLNKASDIMEDMKSLGVSPKVVTYN 225 (537)
Q Consensus 155 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~ 225 (537)
..-|..+...+++.....+|..+++.|+ .|+..+|+.++.+.++.. +.-+.+.+++.|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445566666888888888888888888 888888888888776643 2335566777777777777777777
Q ss_pred HHHHHHhc
Q 047648 226 ILIDGYCK 233 (537)
Q Consensus 226 ~ll~~~~~ 233 (537)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 77776655
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0015 Score=61.73 Aligned_cols=91 Identities=11% Similarity=0.012 Sum_probs=56.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 047648 336 INGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNV 415 (537)
Q Consensus 336 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 415 (537)
...+...|+++.|...|.++.+.... +...|..+..+|...|++++|+..++++++..+. +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCH
Confidence 34445556666666666666665433 4555666666666666666666666666665433 555666666666666666
Q ss_pred HHHHHHHHHHHHC
Q 047648 416 EGVRNIMNELVNN 428 (537)
Q Consensus 416 ~~a~~~~~~~~~~ 428 (537)
++|+..|++.++.
T Consensus 87 ~eA~~~~~~al~l 99 (356)
T PLN03088 87 QTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 6666666666664
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.016 Score=51.35 Aligned_cols=58 Identities=9% Similarity=-0.046 Sum_probs=29.3
Q ss_pred HHHHHHHcCCchHHHHHHHHHhhCCCCCChhhH---HHHHHHHHhCCChhHHHHHHHHHHhC
Q 047648 122 LMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSC---NQLLRALVKEGKFEDVEYVYKEMKRR 180 (537)
Q Consensus 122 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~ 180 (537)
....+...|++++|++.|+.+....+. +.... -.++.++.+.+++++|...+++..+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 334445566666666666666554211 22221 23344555556666666666655554
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.003 Score=52.94 Aligned_cols=113 Identities=11% Similarity=0.032 Sum_probs=86.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047648 328 NVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPS--VITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCL 405 (537)
Q Consensus 328 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 405 (537)
....+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+++..+..+. +...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 345677888889999999999999999987644332 467888999999999999999999999987544 56777788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 406 IAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 406 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
...+...|+...+..-++.... .+++|.++++++.+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~ 148 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIR 148 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHh
Confidence 8888888887666654443322 25677777777764
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.019 Score=50.87 Aligned_cols=184 Identities=11% Similarity=0.052 Sum_probs=103.1
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-HH---HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHH
Q 047648 294 VVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNV-VT---SNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNT 369 (537)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 369 (537)
...+-.....+...|++++|.+.|+++...- |+. .. .-.++.++.+.++++.|...+++..+..+.....-+..
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 3333344555667788888888888887752 322 22 23456677778888888888888777644433333433
Q ss_pred HHHHHHh--cC---------------C---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047648 370 LIDAYCK--EG---------------R---MEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNG 429 (537)
Q Consensus 370 l~~~~~~--~g---------------~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 429 (537)
.+.+.+. .+ + ...|+..|+++++. |-...-..+|...+..+...
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~- 173 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR- 173 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH-
Confidence 3433331 11 1 12233333333332 22223334444433333321
Q ss_pred CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047648 430 MRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELL 499 (537)
Q Consensus 430 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 499 (537)
. ...--.+...|.+.|.+..|..-++.+++- -.+.+........++.+|...|..++|..+...+.
T Consensus 174 --l-a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~-Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 --L-AKYELSVAEYYTKRGAYVAVVNRVEQMLRD-YPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred --H-HHHHHHHHHHHHHcCchHHHHHHHHHHHHH-CCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0 011124556688888888888888888752 22233345666777788888888888887776654
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.64 E-value=7.8e-05 Score=41.78 Aligned_cols=30 Identities=43% Similarity=0.948 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 047648 474 TYNVLIKGFCQKGKLEDANGLLNELLEKGL 503 (537)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 503 (537)
+|+.++.+|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 577888888888888888888888877663
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0069 Score=55.47 Aligned_cols=158 Identities=13% Similarity=0.027 Sum_probs=84.4
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHH-------------H
Q 047648 302 NGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITY-------------N 368 (537)
Q Consensus 302 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------~ 368 (537)
.++...|++++|.+.-...++.. ..+......-..++.-.++.+.+...|++....++ +...- .
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldp--dh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDP--DHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccCh--hhhhHHhHhhhHHHHHHHH
Confidence 45566777777777766666532 11222211112233345677777777777766532 22111 1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 047648 369 TLIDAYCKEGRMEDAFAMRNSMLDR---GVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALC 445 (537)
Q Consensus 369 ~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 445 (537)
.=..-..+.|++..|.+.+.+.+.. +..|+...|.....+..+.|+.++|+.-.+...+.+ +.-...|..-..++.
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l 332 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHL 332 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHH
Confidence 1112234566677777777766643 334455556555566666677777776666665532 111223333344555
Q ss_pred hcCChHHHHHHHHHHHHc
Q 047648 446 KDGKSKKAVSLLDEMFKM 463 (537)
Q Consensus 446 ~~g~~~~A~~~~~~~~~~ 463 (537)
..+++++|++-|+++.+.
T Consensus 333 ~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 566666666666666653
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00032 Score=48.33 Aligned_cols=64 Identities=16% Similarity=0.222 Sum_probs=45.2
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 047648 433 GLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKG-KLEDANGLLNELLE 500 (537)
Q Consensus 433 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 500 (537)
+..+|..+...+...|++++|+..|+++++.. +.+...|..+..+|...| ++++|++.+++.++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~----p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD----PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS----TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 34566777777777777777777777777643 335667777777777777 57777777777766
|
... |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.015 Score=53.20 Aligned_cols=206 Identities=14% Similarity=0.150 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCC-----hhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 047648 117 IIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSS-----VLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNF 191 (537)
Q Consensus 117 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 191 (537)
..|......|-..|++++|.+.|.+..+.....+ ...|......+.+ .++++|.+. |..
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~---------------~~~ 99 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIEC---------------YEK 99 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHH---------------HHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHH---------------HHH
Confidence 5666777888888888888888887754311100 1112222222211 133333333 334
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCC-CCHHHHHHHHHHHHHC----CCC-CCHHHHHHH
Q 047648 192 VLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGI-GKMYKADAVFKDMVEN----GIL-PNEVTFNTL 265 (537)
Q Consensus 192 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~~~~a~~~~~~~~~~----~~~-p~~~~~~~l 265 (537)
.+..|...|++..|-+.+..+-+ .|.. . +++++|++.|++..+. |.+ --..++..+
T Consensus 100 A~~~y~~~G~~~~aA~~~~~lA~---------------~ye~---~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~ 161 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKELAE---------------IYEE---QLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKA 161 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHH---------------HHCC---TT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHH---------------HHHH---HcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHH
Confidence 44566677777776666655443 3444 4 6777777777665431 210 012345566
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCC-----Chh-hHHHHHHHHHhCCCHHHHHHHHHHHHHcC--CCCC--HHHHHHH
Q 047648 266 IDGFCKDENISAAMKVFEEMGSHGIAA-----GVV-TYNSLINGLCVDGKLDEAVALRDEMMASG--LKPN--VVTSNAL 335 (537)
Q Consensus 266 ~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~--~~~~~~l 335 (537)
...+.+.|++++|.++|+++....... +.. .+...+-++...|++..|.+.+++..... +..+ ......|
T Consensus 162 A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l 241 (282)
T PF14938_consen 162 ADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDL 241 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHH
Confidence 667777777777777777765542211 111 22233445556677777777777766432 1111 2334445
Q ss_pred HHHHHhc--CCHHHHHHHHHHHH
Q 047648 336 INGFCKK--KLVEKARVLFDDIS 356 (537)
Q Consensus 336 l~~~~~~--~~~~~a~~~~~~~~ 356 (537)
+.++-.. ..++.+..-|+.+.
T Consensus 242 ~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 242 LEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHhCCHHHHHHHHHHHcccC
Confidence 5554432 23444444444443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0018 Score=58.94 Aligned_cols=131 Identities=12% Similarity=0.078 Sum_probs=81.9
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 047648 295 VTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCK-KKLVEKARVLFDDISEQGLSPSVITYNTLIDA 373 (537)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 373 (537)
.+|..+++..-+.+..+.|..+|.++.+.+ ..+...|......-.. .++.+.|.++|+...+. ...+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 356667777777777777777777776442 2334445444444233 45566677777777665 33366667777777
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047648 374 YCKEGRMEDAFAMRNSMLDRGVLPDV---STYNCLIAGLSREGNVEGVRNIMNELVNN 428 (537)
Q Consensus 374 ~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 428 (537)
+...++.+.|..+|++.+.. +.++. ..|...+..-.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777777777777765 22222 36777777777777777777777777764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0074 Score=46.37 Aligned_cols=92 Identities=18% Similarity=0.158 Sum_probs=42.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHh
Q 047648 407 AGLSREGNVEGVRNIMNELVNNGMRAG--LVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQ 484 (537)
Q Consensus 407 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 484 (537)
.++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..++++.....+.. .-+......+..++..
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~-~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDD-ELNAALRVFLALALYN 87 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-cccHHHHHHHHHHHHH
Confidence 344455555555555555555543332 2334444555555555555555555554310000 0011222223334555
Q ss_pred cCCHHHHHHHHHHHH
Q 047648 485 KGKLEDANGLLNELL 499 (537)
Q Consensus 485 ~g~~~~A~~~~~~~~ 499 (537)
.|++++|+..+-..+
T Consensus 88 ~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 88 LGRPKEALEWLLEAL 102 (120)
T ss_pred CCCHHHHHHHHHHHH
Confidence 566666665554443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.009 Score=59.12 Aligned_cols=136 Identities=11% Similarity=0.078 Sum_probs=88.2
Q ss_pred CCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC--------ChHHHHHHHHHHHh
Q 047648 326 KPNVVTSNALINGFCKK-----KLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEG--------RMEDAFAMRNSMLD 392 (537)
Q Consensus 326 ~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~ 392 (537)
+.+...|...+.+.... ++...|..+|++..+..+. ....|..+..++.... +...+.+...+...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 45556666666654322 2356777777777776433 3444544444333211 22334444444333
Q ss_pred C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHch
Q 047648 393 R-GVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKME 464 (537)
Q Consensus 393 ~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 464 (537)
. ....++..|..+.-.....|++++|...++++.+.+ |+...|..+...+...|++++|.+.++++..++
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 2 123356777777766777899999999999998875 678888999999999999999999999988754
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00013 Score=40.90 Aligned_cols=26 Identities=50% Similarity=0.848 Sum_probs=11.3
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHH
Q 047648 297 YNSLINGLCVDGKLDEAVALRDEMMA 322 (537)
Q Consensus 297 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 322 (537)
|+.++++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 44444444444444444444444443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0004 Score=47.15 Aligned_cols=62 Identities=24% Similarity=0.385 Sum_probs=42.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 047648 440 LVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQ 507 (537)
Q Consensus 440 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 507 (537)
+...+...|++++|++.|+++++.. +-+...+..+..++...|++++|...|+++++ ..|+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~----P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~--~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD----PDNPEAWYLLGRILYQQGRYDEALAYYERALE--LDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS----TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCC
Confidence 4456777778888888888776422 33677777777888888888888888888776 34543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00049 Score=47.25 Aligned_cols=64 Identities=25% Similarity=0.404 Sum_probs=42.3
Q ss_pred HhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 047648 445 CKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVR 514 (537)
Q Consensus 445 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 514 (537)
.+.|++++|++.|+++.+.. +-+...+..++.+|.+.|++++|..+++++.. ..|+...+..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~----p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~--~~~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN----PDNPEARLLLAQCYLKQGQYDEAEELLERLLK--QDPDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT----TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG--GGTTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCHHHHHHHH
Confidence 45677777777777776532 33666777777777777777777777777777 346655554443
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0087 Score=45.97 Aligned_cols=91 Identities=22% Similarity=0.180 Sum_probs=58.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---ChHHHHHHHHHH
Q 047648 370 LIDAYCKEGRMEDAFAMRNSMLDRGVLPD--VSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRA---GLVTYNILVGAL 444 (537)
Q Consensus 370 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~ 444 (537)
+..++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..++++..... +. +......+.-++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHH
Confidence 45556677777777777777777765533 2345556667777777888877777777642 11 222233344566
Q ss_pred HhcCChHHHHHHHHHHH
Q 047648 445 CKDGKSKKAVSLLDEMF 461 (537)
Q Consensus 445 ~~~g~~~~A~~~~~~~~ 461 (537)
...|+.++|++.+-..+
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 77788888777776654
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0036 Score=52.44 Aligned_cols=104 Identities=18% Similarity=0.285 Sum_probs=57.7
Q ss_pred CChhhHHHHHHHHHhC-----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhh
Q 047648 149 SSVLSCNQLLRALVKE-----GKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVT 223 (537)
Q Consensus 149 ~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 223 (537)
.+..+|..+++.+.+. |..+-....+..|.+-|+.-|..+|+.|++++=+ |.+- -..+
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~--------------- 107 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNF--------------- 107 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccH---------------
Confidence 3555555555555433 3444455555555555555555555555555432 1111 0011
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 047648 224 YNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDEN 274 (537)
Q Consensus 224 ~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 274 (537)
+..+..-| ..+-+-|++++++|...|+.||..++..++..+.+.+.
T Consensus 108 fQ~~F~hy-----p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 108 FQAEFMHY-----PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHhccC-----cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11111111 33445678888888888888888888888888876664
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.017 Score=51.18 Aligned_cols=105 Identities=16% Similarity=0.155 Sum_probs=77.4
Q ss_pred HHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCC
Q 047648 356 SEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSRE---GNVEGVRNIMNELVNNGMRA 432 (537)
Q Consensus 356 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~ 432 (537)
...++. |...|..|..+|...|+++.|..-|.+..+...+ ++..+..+..++... ....++..+|+++++.+ +.
T Consensus 149 L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~ 225 (287)
T COG4235 149 LQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PA 225 (287)
T ss_pred HHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-Cc
Confidence 334443 7778888888888888888888888888776433 666666666655433 34567888888888875 56
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047648 433 GLVTYNILVGALCKDGKSKKAVSLLDEMFKM 463 (537)
Q Consensus 433 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 463 (537)
++.+...|...+...|++.+|...|+.|++.
T Consensus 226 ~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 226 NIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 6777778888888888888888888888763
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0094 Score=54.48 Aligned_cols=131 Identities=13% Similarity=0.117 Sum_probs=73.7
Q ss_pred HHHHHHHHHhc-CChHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----Ch
Q 047648 367 YNTLIDAYCKE-GRMEDAFAMRNSMLDR----GVLPD--VSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRA-----GL 434 (537)
Q Consensus 367 ~~~l~~~~~~~-g~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~ 434 (537)
+..+...|... |+++.|++.|++..+. + .+. ..++..+...+.+.|++++|.++|++........ +.
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 34455556666 7788888887776543 2 111 2355666777888888888888888877653221 12
Q ss_pred -HHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCC--CCHHHHHHHHHHHHh--cCCHHHHHHHHHHHH
Q 047648 435 -VTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKW--PNIVTYNVLIKGFCQ--KGKLEDANGLLNELL 499 (537)
Q Consensus 435 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~ 499 (537)
..+...+-++...||+-.|.+.+++.....+ ++. ........|+.++-. ...+++++.-|+.+.
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~-~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDP-SFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST-TSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 1233344466677888888888888764321 121 123445556666643 234556666555553
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.15 Score=50.35 Aligned_cols=86 Identities=20% Similarity=0.276 Sum_probs=50.6
Q ss_pred CchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHH----------HHHhCCChhHHHHHHHHHHhCCC
Q 047648 113 CRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLR----------ALVKEGKFEDVEYVYKEMKRRRI 182 (537)
Q Consensus 113 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~----------~~~~~~~~~~a~~~~~~~~~~~~ 182 (537)
.|.+..|..+...-+..-.++-|...|-+.... +.......|-. .-.--|++++|.++|-.+-+++.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh
Confidence 566788888887777777777777777665543 12111111111 12224889999999888776632
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 047648 183 ELNLDSFNFVLNGLCKAGKLNKASDIME 210 (537)
Q Consensus 183 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 210 (537)
.+..+.+.|++-.+.++++
T Consensus 766 ---------Aielr~klgDwfrV~qL~r 784 (1189)
T KOG2041|consen 766 ---------AIELRKKLGDWFRVYQLIR 784 (1189)
T ss_pred ---------hHHHHHhhhhHHHHHHHHH
Confidence 3455556666655555543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0009 Score=46.06 Aligned_cols=64 Identities=16% Similarity=0.149 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC-ChHHHHHHHHHHHH
Q 047648 398 DVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDG-KSKKAVSLLDEMFK 462 (537)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 462 (537)
++.+|..+...+...|++++|+..|.+.++.+ +.+...|..+..+|...| ++++|++.++++++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 45566667777777777777777777777664 445666777777777777 57777777777665
|
... |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.095 Score=48.87 Aligned_cols=175 Identities=11% Similarity=0.038 Sum_probs=87.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHhHHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047648 334 ALINGFCKKKLVEKARVLFDDISEQG---LSPSVITYNTLIDAYCK---EGRMEDAFAMRNSMLDRGVLPDVSTYNCLIA 407 (537)
Q Consensus 334 ~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 407 (537)
.++-+|....+++...++++.+...- +.-...+--..+-++.+ .|+.++|+.++..++.....+++.+|..+++
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 33444555555555555555554430 11111122223334444 5666666666666444444455566665555
Q ss_pred HHHh---------cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChH----HHHHHH---HHHH-HchhcCCCC
Q 047648 408 GLSR---------EGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSK----KAVSLL---DEMF-KMEKEKKWP 470 (537)
Q Consensus 408 ~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~A~~~~---~~~~-~~~~~~~~~ 470 (537)
.|-. ....++|+..|.+.-+. .|+...=..++..+...|... +..++- .... +.+......
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 5421 12256677777766654 244433333333333344321 122221 1111 111111233
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHH
Q 047648 471 NIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQI 512 (537)
Q Consensus 471 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 512 (537)
+.-.+.+++.++.-.|++++|.+..++|.+. .|...-..+
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l--~~~~W~l~S 343 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL--KPPAWELES 343 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc--CCcchhHHH
Confidence 5555678888888899999999999999874 455433333
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0072 Score=49.03 Aligned_cols=75 Identities=19% Similarity=0.315 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHh
Q 047648 435 VTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLE-----KGLIPNQTT 509 (537)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~ 509 (537)
.+...++..+...|++++|..+.+.++... +-|...|..++.+|...|+..+|+++|+++.+ .|+.|+..+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d----P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD----PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS----TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 345667778889999999999999998754 45888999999999999999999999998754 599998877
Q ss_pred HHHH
Q 047648 510 YQIV 513 (537)
Q Consensus 510 ~~~l 513 (537)
-...
T Consensus 139 ~~l~ 142 (146)
T PF03704_consen 139 RALY 142 (146)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0027 Score=53.15 Aligned_cols=105 Identities=22% Similarity=0.263 Sum_probs=51.9
Q ss_pred ChhhHHHHHHHHhcC--CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhH
Q 047648 220 KVVTYNILIDGYCKK--GGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTY 297 (537)
Q Consensus 220 ~~~~~~~ll~~~~~~--~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 297 (537)
+-.+|..++..|.+. ...|..+-....++.|.+-|+.-|..+|+.|++.+=+ |.+- -..+|+.+=.
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~---------- 113 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM---------- 113 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc----------
Confidence 555555555555542 2245555555566666666666666666666665543 2211 0111111100
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 047648 298 NSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKK 343 (537)
Q Consensus 298 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 343 (537)
- --.+-+-|++++++|...|+-||..++..+++.+++.+
T Consensus 114 -----h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 114 -----H--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred -----c--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 0 01123445556666666666666666666666555544
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.026 Score=48.67 Aligned_cols=61 Identities=15% Similarity=0.088 Sum_probs=39.7
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHhhCCCC--CChhhHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 047648 120 DMLMLAYVKNMKPHLGFEAFKRAGDYGLK--SSVLSCNQLLRALVKEGKFEDVEYVYKEMKRR 180 (537)
Q Consensus 120 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 180 (537)
-.....+...|++.+|++.|+.+....+. -...+.-.++.++.+.|+++.|...++.+.+.
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34556677788888888888888765221 12234556667777888888888888877665
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0026 Score=58.00 Aligned_cols=133 Identities=14% Similarity=0.006 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH----cCCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHh----CC-CCCCH
Q 047648 330 VTSNALINGFCKKKLVEKARVLFDDISE----QGLS-PSVITYNTLIDAYCKEGRMEDAFAMRNSMLD----RG-VLPDV 399 (537)
Q Consensus 330 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~p~~ 399 (537)
..|..+.+.|.-.|+++.|+...+.-.. .|-. .....+..+..++.-.|+++.|.+.++.... .| -....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3455555666667788888777654322 1211 1234567778888888888888887766432 22 12234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 400 STYNCLIAGLSREGNVEGVRNIMNELVNN-----GMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
.+..+|...|.-..++++|+.++.+-+.. +..-....+-+|..+|...|..++|+.+.+..++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 55667777887778888888887765432 1122356777888888888888888888777665
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.042 Score=53.95 Aligned_cols=177 Identities=12% Similarity=0.087 Sum_probs=83.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCC--------ChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHC
Q 047648 183 ELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSL-GVSP--------KVVTYNILIDGYCKKGGIGKMYKADAVFKDMVEN 253 (537)
Q Consensus 183 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~--------~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~ 253 (537)
.|.+..|..+.......-.++.|...|-+.... |++. +...-.+=+.+| -|++++|.+++-+|..+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~-----~g~feeaek~yld~drr 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF-----YGEFEEAEKLYLDADRR 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh-----hcchhHhhhhhhccchh
Confidence 355666666666655555666666655544321 1110 001111112222 46677777776665543
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 047648 254 GILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSH-GIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTS 332 (537)
Q Consensus 254 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 332 (537)
+ ..+..+.+.|++-.+.++++.--.. .-..-...|+.+...+.....+++|.+.|..-.. .
T Consensus 764 D---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~ 825 (1189)
T KOG2041|consen 764 D---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------T 825 (1189)
T ss_pred h---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------h
Confidence 1 2344555566665555554321100 0000124556666666666666666666654321 1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHH
Q 047648 333 NALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMR 387 (537)
Q Consensus 333 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 387 (537)
...++++.+..++++.+.+...+.+ +....-.+.+++.+.|.-++|.+.+
T Consensus 826 e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 826 ENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHH
Confidence 1234444444444444433333222 3334445555566666655555544
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.073 Score=45.89 Aligned_cols=57 Identities=14% Similarity=0.118 Sum_probs=28.0
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 302 NGLCVDGKLDEAVALRDEMMASGL--KPNVVTSNALINGFCKKKLVEKARVLFDDISEQ 358 (537)
Q Consensus 302 ~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 358 (537)
..+...|++++|.+.|+.+...-. +--....-.++.++.+.|+++.|...++...+.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344555666666666666555310 111233344455555666666666666665554
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0021 Score=44.79 Aligned_cols=66 Identities=17% Similarity=0.232 Sum_probs=46.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 047648 442 GALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIV 513 (537)
Q Consensus 442 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 513 (537)
..|.+.+++++|+++++.++.+. +.++..|.....++...|++++|.+.+++.++ ..|+......+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~----p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~--~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD----PDDPELWLQRARCLFQLGRYEEALEDLERALE--LSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC----cccchhhHHHHHHHHHhccHHHHHHHHHHHHH--HCCCcHHHHHH
Confidence 45677777888888888777643 33666777777778888888888888888877 44665554433
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00095 Score=45.79 Aligned_cols=52 Identities=13% Similarity=0.211 Sum_probs=24.8
Q ss_pred HcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 047648 128 KNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRR 180 (537)
Q Consensus 128 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 180 (537)
..|++++|++.|+.+.... |.+...+..+..++.+.|++++|.++++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455555555555554442 224444444555555555555555555554444
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.015 Score=51.91 Aligned_cols=104 Identities=13% Similarity=0.084 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----hHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHH
Q 047648 401 TYNCLIAGLSREGNVEGVRNIMNELVNNGMRAG----LVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYN 476 (537)
Q Consensus 401 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 476 (537)
.|...+....+.|++++|...|+.+++.. |+ ...+-.+..+|...|++++|...|+.+++..+. .+.....+-
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~-s~~~~dAl~ 221 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK-SPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CcchhHHHH
Confidence 34444444455567777777777776653 22 245666777777777777777777777652211 122344555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHh
Q 047648 477 VLIKGFCQKGKLEDANGLLNELLEKGLIPNQTT 509 (537)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 509 (537)
.++..+...|++++|..+|+++++ ..|+...
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~--~yP~s~~ 252 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIK--KYPGTDG 252 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--HCcCCHH
Confidence 566667777777777777777777 3355443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0019 Score=43.75 Aligned_cols=53 Identities=11% Similarity=0.273 Sum_probs=23.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047648 408 GLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMF 461 (537)
Q Consensus 408 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 461 (537)
.+...|++++|...|+++++.. +-+...+..+..++...|++++|...|++++
T Consensus 6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444444444444432 2233444444444444444444444444444
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.084 Score=43.08 Aligned_cols=158 Identities=13% Similarity=0.116 Sum_probs=121.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc
Q 047648 298 NSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKE 377 (537)
Q Consensus 298 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 377 (537)
..+..+..+.=+++...+-..+-.. ..|+...-..+..+....|+..+|...|++...--...|....-.+.++....
T Consensus 60 ~~~~~a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~ 137 (251)
T COG4700 60 HTLLMALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAI 137 (251)
T ss_pred HHHHHHHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhh
Confidence 3444555555566665544444333 46888888889999999999999999999987655556888888899999999
Q ss_pred CChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHH
Q 047648 378 GRMEDAFAMRNSMLDRG---VLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAV 454 (537)
Q Consensus 378 g~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 454 (537)
+++..|...++++-+.+ -.|| +...+.+.+...|...+|..-|+..... -|+..........+.+.|+.+++.
T Consensus 138 ~~~A~a~~tLe~l~e~~pa~r~pd--~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 138 QEFAAAQQTLEDLMEYNPAFRSPD--GHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred ccHHHHHHHHHHHhhcCCccCCCC--chHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHH
Confidence 99999999999988764 2344 4456778899999999999999999886 577777777778889999888777
Q ss_pred HHHHHHH
Q 047648 455 SLLDEMF 461 (537)
Q Consensus 455 ~~~~~~~ 461 (537)
.-+.++.
T Consensus 214 aq~~~v~ 220 (251)
T COG4700 214 AQYVAVV 220 (251)
T ss_pred HHHHHHH
Confidence 6665554
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.21 Score=46.80 Aligned_cols=391 Identities=13% Similarity=0.089 Sum_probs=218.5
Q ss_pred CchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 047648 113 CRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFV 192 (537)
Q Consensus 113 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 192 (537)
|.|..+|-.|+..|..+|.+++-.+++++|..- ++-=..+|..-+.+-...+++..+..+|.+.+.... +...|...
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~lY 115 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWMLY 115 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHHHH
Confidence 677899999999999999999999999999753 333456787778877778899999999999887744 45566666
Q ss_pred HHHHHhcCChh------HHHHHHHHHHh-CCCCCC-hhhHHHHHHHHhcCCCCCCHH------HHHHHHHHHHHCCCCCC
Q 047648 193 LNGLCKAGKLN------KASDIMEDMKS-LGVSPK-VVTYNILIDGYCKKGGIGKMY------KADAVFKDMVENGILPN 258 (537)
Q Consensus 193 ~~~~~~~g~~~------~a~~~~~~~~~-~~~~~~-~~~~~~ll~~~~~~~~~~~~~------~a~~~~~~~~~~~~~p~ 258 (537)
+..-.+.+..- .-.+.|+-... .++.|- ...|+..+..+-.-...+.++ .....+.++..-.+..=
T Consensus 116 l~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nl 195 (660)
T COG5107 116 LEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNL 195 (660)
T ss_pred HHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccH
Confidence 65444433211 11222332222 233332 233444333322211123322 22233333332111000
Q ss_pred HHHH------HHHH-----HHHhc--cCCHHHHHHHHHHHH------------------------------------hCC
Q 047648 259 EVTF------NTLI-----DGFCK--DENISAAMKVFEEMG------------------------------------SHG 289 (537)
Q Consensus 259 ~~~~------~~l~-----~~~~~--~g~~~~a~~~~~~~~------------------------------------~~~ 289 (537)
...| ..=+ +-+.. .--+..|...++++. +.+
T Consensus 196 eklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~ 275 (660)
T COG5107 196 EKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENG 275 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCC
Confidence 0000 0000 00000 000111222222211 111
Q ss_pred CC----------------------CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 047648 290 IA----------------------AGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEK 347 (537)
Q Consensus 290 ~~----------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 347 (537)
+. .....|---...+...++-+.|+......... .|. .-..+...|.-..+-+.
T Consensus 276 l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps--L~~~lse~yel~nd~e~ 351 (660)
T COG5107 276 LKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS--LTMFLSEYYELVNDEEA 351 (660)
T ss_pred cccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc--hheeHHHHHhhcccHHH
Confidence 10 11112222223445667777787776554332 232 11112222333333333
Q ss_pred HHHHHHHHHH--------------cCC---------------CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCC
Q 047648 348 ARVLFDDISE--------------QGL---------------SPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRG-VLP 397 (537)
Q Consensus 348 a~~~~~~~~~--------------~~~---------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p 397 (537)
....|+...+ .+. ..-..+|...+....+..-.+.|..+|-+..+.+ +.+
T Consensus 352 v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h 431 (660)
T COG5107 352 VYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGH 431 (660)
T ss_pred HhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCc
Confidence 3332222210 001 0123456667777778888999999999999888 567
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCC--HHHH
Q 047648 398 DVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPN--IVTY 475 (537)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~ 475 (537)
+...+++++..++ .|+...|..+|+.-...- +.+..--.-.+..+..-++-+.|..+|+..++. +..+ ...|
T Consensus 432 ~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f-~d~~~y~~kyl~fLi~inde~naraLFetsv~r----~~~~q~k~iy 505 (660)
T COG5107 432 HVYIYCAFIEYYA-TGDRATAYNIFELGLLKF-PDSTLYKEKYLLFLIRINDEENARALFETSVER----LEKTQLKRIY 505 (660)
T ss_pred ceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH----HHHhhhhHHH
Confidence 7888899888765 578889999998766652 233333356677788889999999999977641 1222 4678
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 047648 476 NVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMM 518 (537)
Q Consensus 476 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 518 (537)
..++.--..-|+...+..+-++|.+ +.|...+.......|.
T Consensus 506 ~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ 546 (660)
T COG5107 506 DKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHh
Confidence 8999888889999999999999988 6676655555544443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0023 Score=45.28 Aligned_cols=66 Identities=23% Similarity=0.314 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 434 LVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKW---PN-IVTYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 434 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
..+++.+...|...|++++|++.|++++++. .... |+ ..++..+..+|...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIE-EQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3567788888888888888888888888752 2222 22 55778888889999999999999888765
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.14 Score=44.25 Aligned_cols=57 Identities=12% Similarity=-0.023 Sum_probs=27.6
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047648 300 LINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDIS 356 (537)
Q Consensus 300 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 356 (537)
++..+.-.+.+.-....+.++.+...+.++...+.+.+.-.+.|+.+.|...|++..
T Consensus 183 ~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ve 239 (366)
T KOG2796|consen 183 MANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVE 239 (366)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 334444444455555555555544333444444555555555555555555555443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.07 Score=43.00 Aligned_cols=87 Identities=9% Similarity=-0.020 Sum_probs=47.5
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHH
Q 047648 374 YCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKA 453 (537)
Q Consensus 374 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 453 (537)
+...|++++|..+|+-+.-.++. +..-|..|..++...+++++|+..|......+ ..|+..+-....+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHH
Confidence 33556666666666655554433 44445555555555666666666665554443 23333344455566666666666
Q ss_pred HHHHHHHHH
Q 047648 454 VSLLDEMFK 462 (537)
Q Consensus 454 ~~~~~~~~~ 462 (537)
+..|+.+++
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 666665543
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.35 Score=45.45 Aligned_cols=404 Identities=12% Similarity=0.093 Sum_probs=216.3
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHH--HHHhCCChhHHHHHHHHHHhC--CCC----------
Q 047648 118 IIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLR--ALVKEGKFEDVEYVYKEMKRR--RIE---------- 183 (537)
Q Consensus 118 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~--~~~---------- 183 (537)
.-+-++++|..++ .+.....+....+. .| ...|-.+.. .+.+.+.+.+|.+.+..-..+ +..
T Consensus 48 l~grilnAffl~n-ld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~ 123 (549)
T PF07079_consen 48 LGGRILNAFFLNN-LDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQ 123 (549)
T ss_pred HhhHHHHHHHHhh-HHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHH
Confidence 3345777776543 33333333333332 22 233444444 345788999999888776554 211
Q ss_pred --CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC----CCCChhhHHHHHHHHhcCC------------CCCCHHHHHH
Q 047648 184 --LNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLG----VSPKVVTYNILIDGYCKKG------------GIGKMYKADA 245 (537)
Q Consensus 184 --~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~ll~~~~~~~------------~~~~~~~a~~ 245 (537)
+|...=+..+.++...|++.++..+++++...= ..-+..+|+.++-.+.++- -.+-++.+.-
T Consensus 124 l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilf 203 (549)
T PF07079_consen 124 LFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILF 203 (549)
T ss_pred HhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHH
Confidence 122223567788999999999999999887643 3468888888666665410 0111222333
Q ss_pred HHHHHHHC------CCCCCHHHHHHHHHHHhcc--CCHHHHHHHHHHHHhCCCCCChhh-HHHHHHHHHhCCCHHHHHHH
Q 047648 246 VFKDMVEN------GILPNEVTFNTLIDGFCKD--ENISAAMKVFEEMGSHGIAAGVVT-YNSLINGLCVDGKLDEAVAL 316 (537)
Q Consensus 246 ~~~~~~~~------~~~p~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~ 316 (537)
..+++... .+.|.......++....-. .+..--++++......-+.|+-.. ...+...+.. +.+++..+
T Consensus 204 Y~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ 281 (549)
T PF07079_consen 204 YLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHF 281 (549)
T ss_pred HHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHH
Confidence 33333321 1233333334444332211 222233334444444334444222 2223333322 45555555
Q ss_pred HHHHHHcCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHH-------HHHHHHHHh----cCChH
Q 047648 317 RDEMMASGLK----PNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITY-------NTLIDAYCK----EGRME 381 (537)
Q Consensus 317 ~~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~----~g~~~ 381 (537)
-+.+....+. .-..++..++....+.++...|...+.-+.-.. |+...- ..+.+..+. .-+..
T Consensus 282 ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr 359 (549)
T PF07079_consen 282 CEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLR 359 (549)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHH
Confidence 4444333211 124567788888888898888888887776543 222211 122222221 11233
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHH---HHHhcCC-HHHHHHHHHHHHHCCCCCChHHHHHH----HHHHHhcCChHHH
Q 047648 382 DAFAMRNSMLDRGVLPDVSTYNCLIA---GLSREGN-VEGVRNIMNELVNNGMRAGLVTYNIL----VGALCKDGKSKKA 453 (537)
Q Consensus 382 ~A~~~~~~~~~~~~~p~~~~~~~l~~---~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~g~~~~A 453 (537)
.-+.+|+.....++. ....-..++. -+.+.|. -++|+.+++.+.+-. +-|...-|.+ -.+|...=..+.-
T Consensus 360 ~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~ 437 (549)
T PF07079_consen 360 DYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAI 437 (549)
T ss_pred HHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 445566666655433 2222233332 2344555 788999999888752 3343333322 2333332222222
Q ss_pred HHHHHHHHHchhcCCCC----CHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCcCCcc
Q 047648 454 VSLLDEMFKMEKEKKWP----NIVTYNVLIKG--FCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMMEKGFIPDIE 527 (537)
Q Consensus 454 ~~~~~~~~~~~~~~~~~----~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~ 527 (537)
-+++.-+.-+...|++| +...-|.|..| +...|++.++.-.-..+.+ +.|+..+|+.+.-.+.....+.+|-
T Consensus 438 ~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~ 515 (549)
T PF07079_consen 438 PRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAW 515 (549)
T ss_pred HHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 22222222223556665 34455555544 5678999999988888887 8899999999999998888888887
Q ss_pred CCCCcc
Q 047648 528 GHMYNI 533 (537)
Q Consensus 528 ~~l~~~ 533 (537)
+++.++
T Consensus 516 ~~l~~L 521 (549)
T PF07079_consen 516 EYLQKL 521 (549)
T ss_pred HHHHhC
Confidence 776554
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.018 Score=52.77 Aligned_cols=136 Identities=16% Similarity=0.099 Sum_probs=93.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCChH
Q 047648 366 TYNTLIDAYCKEGRMEDAFAMRNSMLD----RGVL-PDVSTYNCLIAGLSREGNVEGVRNIMNELVNN----GM-RAGLV 435 (537)
Q Consensus 366 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~ 435 (537)
.|..|...|.-.|+++.|+...+.-++ -|-. .....+..+..++.-.|+++.|.+.|+..... |- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455566666677889998876654322 1211 13456778888999999999999998876532 21 22344
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHchhc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 436 TYNILVGALCKDGKSKKAVSLLDEMFKMEKE--KKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEK 501 (537)
Q Consensus 436 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (537)
..-+|...|.-..++++|+.++.+-+.+... ...-....+-+|..+|...|..+.|+.+.+.-++.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 5567888888888999999998876542211 11123456778889999999999999888776653
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.028 Score=50.25 Aligned_cols=97 Identities=13% Similarity=0.086 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHH
Q 047648 332 SNALINGFCKKKLVEKARVLFDDISEQGLSPS--VITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVL--PDVSTYNCLIA 407 (537)
Q Consensus 332 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~ 407 (537)
|...+..+.+.|++++|...|+.+.+..+... ...+..+..+|...|++++|...|+.+.+.-+. .....+..+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 33333333444555555555555554432211 123344555555555555555555555543111 11223333344
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 047648 408 GLSREGNVEGVRNIMNELVNN 428 (537)
Q Consensus 408 ~~~~~~~~~~a~~~~~~~~~~ 428 (537)
.+...|+.++|..+|+++++.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 444455555555555554443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.11 Score=41.95 Aligned_cols=100 Identities=11% Similarity=-0.028 Sum_probs=79.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHh
Q 047648 405 LIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQ 484 (537)
Q Consensus 405 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 484 (537)
...-+...|++++|..+|+-+.-.+ +-+..-+..|..++-..+++++|+..|..+..+... |+..+-....+|..
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~----dp~p~f~agqC~l~ 117 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN----DYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC----CCCccchHHHHHHH
Confidence 3344567999999999999998876 456777888999999999999999999998876544 33335567889999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHH
Q 047648 485 KGKLEDANGLLNELLEKGLIPNQTTYQI 512 (537)
Q Consensus 485 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~ 512 (537)
.|+.+.|...|+..++ .|.......
T Consensus 118 l~~~~~A~~~f~~a~~---~~~~~~l~~ 142 (165)
T PRK15331 118 MRKAAKARQCFELVNE---RTEDESLRA 142 (165)
T ss_pred hCCHHHHHHHHHHHHh---CcchHHHHH
Confidence 9999999999999998 355444433
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.11 Score=42.04 Aligned_cols=59 Identities=19% Similarity=0.298 Sum_probs=31.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047648 367 YNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELV 426 (537)
Q Consensus 367 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 426 (537)
...++..+...|+++.|..+.+.+....+. +...|..+|.+|...|+...|.++|+++.
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 344455555566666666666666555433 55556666666666666666666655554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.43 Score=44.16 Aligned_cols=80 Identities=18% Similarity=0.269 Sum_probs=39.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC
Q 047648 370 LIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGK 449 (537)
Q Consensus 370 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 449 (537)
.+.-+...|+...|.++-.+.. .|+...|...+.+++..++|++..++... +-++.-|..++.+|.+.|+
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 3444445555555544433331 24555555555555555555555543321 1123445555555555555
Q ss_pred hHHHHHHHHH
Q 047648 450 SKKAVSLLDE 459 (537)
Q Consensus 450 ~~~A~~~~~~ 459 (537)
..+|..++.+
T Consensus 253 ~~eA~~yI~k 262 (319)
T PF04840_consen 253 KKEASKYIPK 262 (319)
T ss_pred HHHHHHHHHh
Confidence 5555555544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.61 Score=45.86 Aligned_cols=56 Identities=14% Similarity=0.118 Sum_probs=38.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047648 328 NVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLD 392 (537)
Q Consensus 328 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 392 (537)
+..+...+...+-+...+.-|-++|.+|-+. ..+++.....++|++|..+.+...+
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 3445555555566677777888888777432 3466777888888888888776554
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.45 Score=44.02 Aligned_cols=111 Identities=14% Similarity=0.101 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047648 330 VTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGL 409 (537)
Q Consensus 330 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 409 (537)
.+.+.-+.-+...|+...|.++-.+. . .|+...|...+.+++..++|++-.++... + -.+.-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s--k----KsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS--K----KSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--C----CCCCChHHHHHHH
Confidence 34555566777888888887776554 2 36888899999999999999987776432 1 1456788999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 047648 410 SREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEM 460 (537)
Q Consensus 410 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 460 (537)
.+.|+..+|..+..++ + +..-+..|.++|++.+|.+.-.+.
T Consensus 248 ~~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999999999888772 1 245678899999999988765443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0079 Score=41.82 Aligned_cols=54 Identities=9% Similarity=0.094 Sum_probs=29.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 408 GLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 408 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
.|.+.+++++|.+++++++..+ |.++..+.....++.+.|++++|.+.|+.+++
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4455555555555555555543 33445555555555555555555555555554
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.79 Score=45.99 Aligned_cols=322 Identities=11% Similarity=0.092 Sum_probs=153.2
Q ss_pred hCCCCCCHHHHH-----HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHC
Q 047648 179 RRRIELNLDSFN-----FVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVEN 253 (537)
Q Consensus 179 ~~~~~~~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~ 253 (537)
+.|++.+..-|. .++.-+...+.+..|+++-..+...-.. +...|.....-+.+..+..+-+-+..+-+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~- 502 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA- 502 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcc-
Confidence 346666666654 3566677788888888887776532111 256677777777664333333333333333322
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC----CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Q 047648 254 GILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIA----AGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNV 329 (537)
Q Consensus 254 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 329 (537)
... ....|..+......+|+++-|..+++.-...+.. .+..-+...+.-+...|+.+-...++-.+... .+.
T Consensus 503 ~~~-~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~ 578 (829)
T KOG2280|consen 503 KLT-PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNR 578 (829)
T ss_pred cCC-CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHH
Confidence 222 4456777888788889999988887644332211 12223344445555666666655555555432 111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHH-HHHHH----hCCCCCCHHHHHH
Q 047648 330 VTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAM-RNSML----DRGVLPDVSTYNC 404 (537)
Q Consensus 330 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~----~~~~~p~~~~~~~ 404 (537)
..+. ....+..-|..+|.+..++. +..+ +-..|.+..+...+-.+ ++... ..+..|+. ..
T Consensus 579 s~l~------~~l~~~p~a~~lY~~~~r~~---~~~~---l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~ 643 (829)
T KOG2280|consen 579 SSLF------MTLRNQPLALSLYRQFMRHQ---DRAT---LYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KT 643 (829)
T ss_pred HHHH------HHHHhchhhhHHHHHHHHhh---chhh---hhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HH
Confidence 1111 11122333444444443321 1100 11111111111111111 11100 01122222 22
Q ss_pred HHHHHHhcCCH----------HHHHHHHHHHHHC-CCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHH
Q 047648 405 LIAGLSREGNV----------EGVRNIMNELVNN-GMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIV 473 (537)
Q Consensus 405 l~~~~~~~~~~----------~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 473 (537)
....+++.... .+-+++.+.+... |......+.+--+.-+..-|+..+|.++-.+.. -||-.
T Consensus 644 ~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-------ipdKr 716 (829)
T KOG2280|consen 644 AANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-------IPDKR 716 (829)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-------Ccchh
Confidence 22333332221 1111222222211 222233344445555666666666666655552 46666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCcCCccCCCCccC
Q 047648 474 TYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMMEKGFIPDIEGHMYNIS 534 (537)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~l~~~~ 534 (537)
.|-.-+.+++..++|++-.++-+.+. .+.-|.-.+.+|.+.|+.++|..|.+.+.
T Consensus 717 ~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 717 LWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred hHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 66666667777777766655544442 13345556666777777777766666543
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.1 Score=50.96 Aligned_cols=91 Identities=14% Similarity=0.222 Sum_probs=48.4
Q ss_pred HHHHHHHHHhcCChhHHHHH---------HHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCH
Q 047648 189 FNFVLNGLCKAGKLNKASDI---------MEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNE 259 (537)
Q Consensus 189 ~~~l~~~~~~~g~~~~a~~~---------~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~ 259 (537)
+.+-+..|...|.+++|.++ ++.+... ..+.-.++..=.+|.+..+ -.+-+.+.-++++.++|-.|+.
T Consensus 559 ~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRd-l~~L~li~EL~~~k~rge~P~~ 635 (1081)
T KOG1538|consen 559 QSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRD-LRYLELISELEERKKRGETPND 635 (1081)
T ss_pred ccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhc-cHHHHHHHHHHHHHhcCCCchH
Confidence 44445566777777776654 2222111 1133344555556665221 2233444556667777776775
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHH
Q 047648 260 VTFNTLIDGFCKDENISAAMKVFEEM 285 (537)
Q Consensus 260 ~~~~~l~~~~~~~g~~~~a~~~~~~~ 285 (537)
.. +...++-.|.+.+|-++|.+-
T Consensus 636 iL---lA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 636 LL---LADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred HH---HHHHHHhhhhHHHHHHHHHHc
Confidence 43 334455567777777777553
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.6 Score=43.73 Aligned_cols=32 Identities=19% Similarity=0.136 Sum_probs=15.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047648 307 DGKLDEAVALRDEMMASGLKPNVVTSNALING 338 (537)
Q Consensus 307 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 338 (537)
.|+.++|++++..+......+++.++..+...
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 45555555555554333334444444444433
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.58 E-value=1.1 Score=45.77 Aligned_cols=182 Identities=11% Similarity=0.122 Sum_probs=112.2
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 047648 65 LTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGD 144 (537)
Q Consensus 65 ~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 144 (537)
....-+..+.+...++-|..+.+.-- .++..+ ......-...+.+.|++++|...|-+.+.
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~-----~d~d~~--------------~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~ 396 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQH-----LDEDTL--------------AEIHRKYGDYLYGKGDFDEATDQYIETIG 396 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcC-----CCHHHH--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHcc
Confidence 35556777777777777777655311 111111 12233445677889999999999988775
Q ss_pred CCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhH
Q 047648 145 YGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTY 224 (537)
Q Consensus 145 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 224 (537)
. +.|+ .++.-+....+..+--..++.+.+.|+. +...-..|+.+|.+.++.+.-.++.+.-. .|.. ..-.
T Consensus 397 ~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~ 466 (933)
T KOG2114|consen 397 F-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDV 466 (933)
T ss_pred c-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeH
Confidence 3 2322 3566666677777778888888888876 66667889999999999988777766544 2211 1123
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 047648 225 NILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMG 286 (537)
Q Consensus 225 ~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 286 (537)
...+..+.+ .+-.++|.-+-..... +......+ +-..+++++|++.+..+.
T Consensus 467 e~al~Ilr~---snyl~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 467 ETALEILRK---SNYLDEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHHH---hChHHHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 445555555 5556665554443322 22333333 334577888888776653
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0078 Score=42.53 Aligned_cols=63 Identities=16% Similarity=0.193 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCC-hHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 400 STYNCLIAGLSREGNVEGVRNIMNELVNN----GM-RAG-LVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
.+++.+...|...|++++|+..|++..+. |- .|+ ..++..+..+|...|++++|++.++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35666666677777777777777666543 11 121 45667777778888888888888877765
|
... |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.045 Score=51.74 Aligned_cols=63 Identities=14% Similarity=0.083 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 398 DVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGL----VTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
+...++.+..+|...|++++|+..|++.++.+ |+. .+|..+..+|...|+.++|++.++++++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56788888889999999999999999988864 443 3588888999999999999999999876
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.75 Score=42.47 Aligned_cols=120 Identities=12% Similarity=0.122 Sum_probs=64.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC-CChHHHHHHHHHHHhcC
Q 047648 371 IDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNN-GMR-AGLVTYNILVGALCKDG 448 (537)
Q Consensus 371 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~g 448 (537)
..++.+.|+..++-.+++.+-+..+.|+. +. +..+.+.|+ .+..-+++..+. .++ .+......+..+-...|
T Consensus 270 Aralf~d~~~rKg~~ilE~aWK~ePHP~i--a~--lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~ 343 (531)
T COG3898 270 ARALFRDGNLRKGSKILETAWKAEPHPDI--AL--LYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAG 343 (531)
T ss_pred HHHHHhccchhhhhhHHHHHHhcCCChHH--HH--HHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhcc
Confidence 45566777777777777777665444432 21 112233333 333333333221 122 33455556666666777
Q ss_pred ChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHc
Q 047648 449 KSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQ-KGKLEDANGLLNELLEK 501 (537)
Q Consensus 449 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~ 501 (537)
++..|+.--+.+.+ ..|....|..|...-.. .|+-.++...+-+.++.
T Consensus 344 e~~~ARa~Aeaa~r-----~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 344 EFSAARAKAEAAAR-----EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred chHHHHHHHHHHhh-----hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 77777666665543 24555666666655433 47777777777666654
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.06 Score=41.00 Aligned_cols=94 Identities=14% Similarity=0.191 Sum_probs=51.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCC
Q 047648 408 GLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGK 487 (537)
Q Consensus 408 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 487 (537)
+.+..|+++.|++.|.+.+.. .+.....||.-.+++.-.|+.++|++-+++++++.......--..|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 345566666666666666654 2445566666666666666666666666666654322111122233333444555666
Q ss_pred HHHHHHHHHHHHHcC
Q 047648 488 LEDANGLLNELLEKG 502 (537)
Q Consensus 488 ~~~A~~~~~~~~~~g 502 (537)
.+.|..-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 666666666655544
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.92 Score=41.92 Aligned_cols=88 Identities=13% Similarity=0.021 Sum_probs=53.4
Q ss_pred HHHHHcCCchHHHHHHHHHhhCCCCCChhh--HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 047648 124 LAYVKNMKPHLGFEAFKRAGDYGLKSSVLS--CNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGK 201 (537)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 201 (537)
++-.-.|+++.|.+-|+.|... |.... ...|.-.--+.|..+.|...-+.....-. .-...+..++...+..|+
T Consensus 128 Qaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gd 203 (531)
T COG3898 128 QAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAP-QLPWAARATLEARCAAGD 203 (531)
T ss_pred HHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhcc-CCchHHHHHHHHHHhcCC
Confidence 3444567888888888888752 22221 22233333456777777766666555422 245566777777777788
Q ss_pred hhHHHHHHHHHHhC
Q 047648 202 LNKASDIMEDMKSL 215 (537)
Q Consensus 202 ~~~a~~~~~~~~~~ 215 (537)
++.|+++++.-.+.
T Consensus 204 Wd~AlkLvd~~~~~ 217 (531)
T COG3898 204 WDGALKLVDAQRAA 217 (531)
T ss_pred hHHHHHHHHHHHHH
Confidence 88887777766543
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.12 Score=40.11 Aligned_cols=99 Identities=14% Similarity=0.185 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHH
Q 047648 398 DVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNV 477 (537)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 477 (537)
|..++..++.++++.|+.+....+++..-..+ ++... ..+. . .......|+..+..+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~--~~~~~---------~~~~----------~--~~~spl~Pt~~lL~A 57 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGID--VNGKK---------KEGD----------Y--PPSSPLYPTSRLLIA 57 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCC--CCCcc---------ccCc----------c--CCCCCCCCCHHHHHH
Confidence 45677788888888888888887776655332 11100 0000 0 012334566666666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHhHHHHHHHHHh
Q 047648 478 LIKGFCQKGKLEDANGLLNELLEK-GLIPNQTTYQIVREEMME 519 (537)
Q Consensus 478 l~~~~~~~g~~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~ 519 (537)
++.+|+..|++..|+++++...+. +++.+..+|..+++-...
T Consensus 58 Iv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 58 IVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 666666666666666666665542 455555666666654443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.89 Score=41.43 Aligned_cols=102 Identities=11% Similarity=0.063 Sum_probs=54.7
Q ss_pred hHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 047648 223 TYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLIN 302 (537)
Q Consensus 223 ~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 302 (537)
+...++.+|...+.....++|..+++.+.... +-....+..-+..+.+.++.+.+.+.+..|...- ......+...+.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence 45666677776554555666777777665432 2134455555666666777777777777777652 212333444443
Q ss_pred HH---HhCCCHHHHHHHHHHHHHcCCCC
Q 047648 303 GL---CVDGKLDEAVALRDEMMASGLKP 327 (537)
Q Consensus 303 ~~---~~~~~~~~A~~~~~~~~~~~~~~ 327 (537)
.+ .. .....|...+..+....+.|
T Consensus 164 ~i~~l~~-~~~~~a~~~ld~~l~~r~~~ 190 (278)
T PF08631_consen 164 HIKQLAE-KSPELAAFCLDYLLLNRFKS 190 (278)
T ss_pred HHHHHHh-hCcHHHHHHHHHHHHHHhCC
Confidence 33 22 22344445555444433333
|
It is also involved in sporulation []. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.8 Score=40.78 Aligned_cols=145 Identities=12% Similarity=0.119 Sum_probs=86.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 047648 338 GFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEG 417 (537)
Q Consensus 338 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 417 (537)
.....|++.+|...|......... +...--.++.+|...|+.+.|..++..+-..-..........-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 345667777787877777766443 3445556777888888888888887776544222222222233444444444444
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCC
Q 047648 418 VRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGK 487 (537)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 487 (537)
...+-++.-.. +-|...-..+...+...|+.+.|.+.+-.+++.+ .-..|...-..++..+.--|.
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d--~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRD--RGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--ccccCcHHHHHHHHHHHhcCC
Confidence 44444444432 3366666777777888888888887777776522 223345555666666555553
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.48 Score=45.17 Aligned_cols=113 Identities=11% Similarity=0.064 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHH
Q 047648 380 MEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDE 459 (537)
Q Consensus 380 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 459 (537)
..+|.+..++.++.+.. |+.....+..+....++++.+...|++....+ |....+|......+.-.|+.++|.+.+++
T Consensus 320 ~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 320 AQKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45666677777777655 77777777777777777888888888877764 33456666666677777888888888888
Q ss_pred HHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047648 460 MFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNE 497 (537)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 497 (537)
++++++. ..-.......+..|+. ...++|++++-+
T Consensus 398 alrLsP~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 432 (458)
T PRK11906 398 SLQLEPR--RRKAVVIKECVDMYVP-NPLKNNIKLYYK 432 (458)
T ss_pred HhccCch--hhHHHHHHHHHHHHcC-CchhhhHHHHhh
Confidence 7654322 1122233333334443 345666666543
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.12 Score=40.18 Aligned_cols=97 Identities=13% Similarity=0.068 Sum_probs=60.1
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 047648 363 SVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVG 442 (537)
Q Consensus 363 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 442 (537)
|..++..++.++++.|+.+....+++..-. +.++.. ...+. .-......|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~---------~~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGK---------KKEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCc---------cccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 456889999999999999999888876542 221110 00000 1112234566677777777
Q ss_pred HHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHH
Q 047648 443 ALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKG 481 (537)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 481 (537)
+|+..|++..|+++++...+ .-+++-+..+|..|+.-
T Consensus 61 sf~~n~~i~~al~~vd~fs~--~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSR--KYPIPIPKEFWRRLLEW 97 (126)
T ss_pred HHHhcccHHHHHHHHHHHHH--HcCCCCCHHHHHHHHHH
Confidence 77777777777777776664 33355556667666643
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.19 Score=45.16 Aligned_cols=154 Identities=12% Similarity=0.071 Sum_probs=112.3
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh--HH--HHHHHHHHhcCCh
Q 047648 305 CVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVI--TY--NTLIDAYCKEGRM 380 (537)
Q Consensus 305 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~--~~l~~~~~~~g~~ 380 (537)
--.|++.+|-..++++.+. .+.|...+...=.+|.-.|+.+.-...++++... ..++.. +| ....-++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 4578888888888888876 5677788888888899999999888888888765 122332 22 3344455689999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCChHHHHHHHHHHHhcCChHHHHHHH
Q 047648 381 EDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNG---MRAGLVTYNILVGALCKDGKSKKAVSLL 457 (537)
Q Consensus 381 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 457 (537)
++|.+..++..+.+.. |...-.++...+...|++.++.+++.+-...= --.-...|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 9999999999887655 77788888888889999999999887655431 0011223334445566778999999999
Q ss_pred HHHH
Q 047648 458 DEMF 461 (537)
Q Consensus 458 ~~~~ 461 (537)
+.-+
T Consensus 271 D~ei 274 (491)
T KOG2610|consen 271 DREI 274 (491)
T ss_pred HHHH
Confidence 7654
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.8 Score=39.41 Aligned_cols=209 Identities=10% Similarity=0.060 Sum_probs=104.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047648 261 TFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFC 340 (537)
Q Consensus 261 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 340 (537)
.|.....+|...+++++|...+.+..+. ...+...|.+ ...++.|.-+.+++.+- ..-...|+--...|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 3444455666677777777766665431 1112222211 11234444444444431 112233444555566
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC---CCC--CCHHHHHHHHHHHHhcCCH
Q 047648 341 KKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDR---GVL--PDVSTYNCLIAGLSREGNV 415 (537)
Q Consensus 341 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~--p~~~~~~~l~~~~~~~~~~ 415 (537)
.+|..+.|-..+++.-+. ....++++|+.++++.... +-. --...+..+.+.+.+...+
T Consensus 103 E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 666666655555544331 2233445555555543321 100 0122344444555666666
Q ss_pred HHHHHHHHHHHHC----CCCCC-hHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 047648 416 EGVRNIMNELVNN----GMRAG-LVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLED 490 (537)
Q Consensus 416 ~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 490 (537)
++|-..+.+-... .--++ ...|...|-.|....++..|.+.++...++.....+-+..+...|+.+| ..|+.++
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHH
Confidence 6665555433211 11122 2345556666677778888888888765433332333566777777666 4577777
Q ss_pred HHHHHH
Q 047648 491 ANGLLN 496 (537)
Q Consensus 491 A~~~~~ 496 (537)
+.+++.
T Consensus 246 ~~kvl~ 251 (308)
T KOG1585|consen 246 IKKVLS 251 (308)
T ss_pred HHHHHc
Confidence 766543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.096 Score=48.43 Aligned_cols=127 Identities=14% Similarity=0.039 Sum_probs=78.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC-----CCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 047648 369 TLIDAYCKEGRMEDAFAMRNSMLDR-----GVLP---------DVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGL 434 (537)
Q Consensus 369 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 434 (537)
.-...|.+.|++..|...|++.+.. +..+ -..++..+..++.+.+++..|++...+.+..+ ++|.
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~ 291 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNV 291 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCch
Confidence 3466788899999999988886643 1111 12345556666777777777777777777765 5666
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHH
Q 047648 435 VTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLED-ANGLLNELLE 500 (537)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~ 500 (537)
...-.=..++...|+++.|+..|+++++.. +-|-.+-+.++..-.+..+..+ ..++|..|..
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k~~----P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALKLE----PSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 666666777777777777777777776543 2233333344433333333332 3556666654
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.13 Score=48.72 Aligned_cols=66 Identities=8% Similarity=-0.038 Sum_probs=57.4
Q ss_pred CchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCCh----hhHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 047648 113 CRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSV----LSCNQLLRALVKEGKFEDVEYVYKEMKRR 180 (537)
Q Consensus 113 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 180 (537)
|.+...++.+..+|...|++++|+..|++.++.+ |+. .+|..+..+|.+.|++++|.+.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5667899999999999999999999999999864 443 35888999999999999999999998875
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.56 Score=46.26 Aligned_cols=83 Identities=7% Similarity=-0.103 Sum_probs=39.2
Q ss_pred CchHHHHHHHHHhhCCCCCChhhHH-HHHHHHHhCCChhHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCChhHHH
Q 047648 131 KPHLGFEAFKRAGDYGLKSSVLSCN-QLLRALVKEGKFEDVEYVYKEMKRRRI---ELNLDSFNFVLNGLCKAGKLNKAS 206 (537)
Q Consensus 131 ~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~ 206 (537)
..+.|.++++.+... -|+...|. .-.+.+...|++++|.+.|+....... ......+--++..+.-..++++|.
T Consensus 248 ~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 455566666666554 23333332 223455556666666666665432110 011112223344445555666666
Q ss_pred HHHHHHHhC
Q 047648 207 DIMEDMKSL 215 (537)
Q Consensus 207 ~~~~~~~~~ 215 (537)
+.|..+.+.
T Consensus 326 ~~f~~L~~~ 334 (468)
T PF10300_consen 326 EYFLRLLKE 334 (468)
T ss_pred HHHHHHHhc
Confidence 666655543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.13 Score=44.90 Aligned_cols=103 Identities=17% Similarity=0.238 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCH
Q 047648 398 DVSTYNCLIAGLSR-----EGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNI 472 (537)
Q Consensus 398 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 472 (537)
|..+|...+..+.. .+.++-....++.|.+.|+.-|..+|+.|+..+-+..- .| .
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf-------------------iP-~ 125 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF-------------------IP-Q 125 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc-------------------cc-H
Confidence 45555555555432 34556666667777777877777777777766533211 11 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCC
Q 047648 473 VTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMMEKGF 522 (537)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~ 522 (537)
.++......|-+ +-+-+++++++|...|+.||..+-..+++++.+.|.
T Consensus 126 nvfQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 126 NVFQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 222222222322 223467777777777777777777777777776654
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.84 E-value=1.1 Score=39.05 Aligned_cols=76 Identities=14% Similarity=0.063 Sum_probs=42.0
Q ss_pred HHHHHHHHcCCchHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047648 121 MLMLAYVKNMKPHLGFEAFKRAGDYGLKSS---VLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLC 197 (537)
Q Consensus 121 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 197 (537)
.-+..-.+.|++++|.+.|+.+.... +-+ ..+.-.++-++.+.+++++|+...++..+.-+.-....|...|.+++
T Consensus 39 ~~g~~~L~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 39 NEGLTELQKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 34445566777777777777777552 222 23344445566666777777777776665433222223444444444
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.22 Score=43.68 Aligned_cols=99 Identities=14% Similarity=0.148 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHH
Q 047648 401 TYNCLIAGLSREGNVEGVRNIMNELVNNGM--RAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVL 478 (537)
Q Consensus 401 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 478 (537)
.|+.-+.. .+.|++..|..-|...++... .-....+-.|.+++...|++++|..+|..+.+-.+ ..+.-+..+--|
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P-~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYP-KSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCC-CCCCChHHHHHH
Confidence 45554443 355667777777777776521 12234556677777777777777777777765221 112234666777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 047648 479 IKGFCQKGKLEDANGLLNELLEK 501 (537)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~~~~~ 501 (537)
..+..+.|+.++|...|+++.+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 77777788888888888887774
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.80 E-value=1.3 Score=39.47 Aligned_cols=144 Identities=16% Similarity=0.109 Sum_probs=86.9
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 047648 267 DGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVE 346 (537)
Q Consensus 267 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 346 (537)
......|++.+|...|+........ +...-..+..+|...|+.+.|..++..+...--.........-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 4455678888888888887765322 455566777888888888888888887655422222222233344444444444
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCC
Q 047648 347 KARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDR--GVLPDVSTYNCLIAGLSREGN 414 (537)
Q Consensus 347 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~~~ 414 (537)
+...+-.+.... + -|...-..+...+...|+.+.|.+.+-.++++ |.. |...-..++..+.-.|.
T Consensus 221 ~~~~l~~~~aad-P-dd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 221 EIQDLQRRLAAD-P-DDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGP 287 (304)
T ss_pred CHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCC
Confidence 444444444332 1 15556666777788888888888777666554 333 45555566665555553
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.66 Score=44.27 Aligned_cols=141 Identities=11% Similarity=0.054 Sum_probs=98.7
Q ss_pred hHHHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC
Q 047648 380 MEDAFAMRNSMLDR-GVLPD-VSTYNCLIAGLSR---------EGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDG 448 (537)
Q Consensus 380 ~~~A~~~~~~~~~~-~~~p~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 448 (537)
.+.|+.+|.+.... ...|+ ...|..+..++.. ..+..+|.+.-++..+.+ +.|+.....+..+....|
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 45677778887722 23333 3344443333321 234567788888888887 778899999999889999
Q ss_pred ChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HhHHHHHHHHHhcCCcCC
Q 047648 449 KSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQ---TTYQIVREEMMEKGFIPD 525 (537)
Q Consensus 449 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~---~~~~~l~~~~~~~g~~~~ 525 (537)
+++.|...|+++..+. +....+|......+.-.|+.++|.+.+++.++ +.|.. ......++.|+..+. ++
T Consensus 353 ~~~~a~~~f~rA~~L~----Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~~~-~~ 425 (458)
T PRK11906 353 QAKVSHILFEQAKIHS----TDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPNPL-KN 425 (458)
T ss_pred chhhHHHHHHHHhhcC----CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCCch-hh
Confidence 9999999999998754 33456777777777888999999999999888 44654 344555667777764 44
Q ss_pred ccC
Q 047648 526 IEG 528 (537)
Q Consensus 526 a~~ 528 (537)
+..
T Consensus 426 ~~~ 428 (458)
T PRK11906 426 NIK 428 (458)
T ss_pred hHH
Confidence 443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.73 E-value=1.9 Score=40.78 Aligned_cols=375 Identities=13% Similarity=0.117 Sum_probs=201.5
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047648 136 FEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSL 215 (537)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 215 (537)
+++=+++.+ + |.|..+|-.|+.-+..++..++..+++++|..- ++--..+|...+.+-...+++..+..+|.+-+..
T Consensus 29 lrLRerIkd-N-PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 29 LRLRERIKD-N-PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred HHHHHHhhc-C-chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 344444444 3 668889999999999999999999999999864 3334567888888878889999999999998876
Q ss_pred CCCCChhhHHHHHHHHhcCCC--CCCH-HHHHHHHHHHHH-CCCCCCH-HHHHHHHHHH---hc------cCCHHHHHHH
Q 047648 216 GVSPKVVTYNILIDGYCKKGG--IGKM-YKADAVFKDMVE-NGILPNE-VTFNTLIDGF---CK------DENISAAMKV 281 (537)
Q Consensus 216 ~~~~~~~~~~~ll~~~~~~~~--~~~~-~~a~~~~~~~~~-~~~~p~~-~~~~~l~~~~---~~------~g~~~~a~~~ 281 (537)
. .+...|...+.-.-+... .|+. ....+.|+-... .++.|-. ..|+..+... -. ..+++.....
T Consensus 106 ~--l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~ 183 (660)
T COG5107 106 S--LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNG 183 (660)
T ss_pred h--ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 4 356667666654444211 1111 111223332222 3444433 2233322211 11 2334555556
Q ss_pred HHHHHhCCCCCChhhH------HHHHHHHH-------hCCCHHHHHHHHHHHHH--cCCCC----CHH------------
Q 047648 282 FEEMGSHGIAAGVVTY------NSLINGLC-------VDGKLDEAVALRDEMMA--SGLKP----NVV------------ 330 (537)
Q Consensus 282 ~~~~~~~~~~~~~~~~------~~l~~~~~-------~~~~~~~A~~~~~~~~~--~~~~~----~~~------------ 330 (537)
|.+|....+..-...| ..=++-.. ..--+-.|...++++.. .|... +..
T Consensus 184 Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~ 263 (660)
T COG5107 184 YMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSN 263 (660)
T ss_pred HHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccch
Confidence 6666543111001111 11011000 01112334444443322 01100 000
Q ss_pred --------------------------HHHHHH--------------HHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHH
Q 047648 331 --------------------------TSNALI--------------NGFCKKKLVEKARVLFDDISEQGLSPSVITYNTL 370 (537)
Q Consensus 331 --------------------------~~~~ll--------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 370 (537)
.++..+ ..+...++-+.|......-... .|+ .---+
T Consensus 264 WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps--L~~~l 339 (660)
T COG5107 264 WLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS--LTMFL 339 (660)
T ss_pred hhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc--hheeH
Confidence 111111 1112234444444444332221 222 11112
Q ss_pred HHHHHhcCChHHHHHHHHHHHh--------------CCCC---------------CCHHHHHHHHHHHHhcCCHHHHHHH
Q 047648 371 IDAYCKEGRMEDAFAMRNSMLD--------------RGVL---------------PDVSTYNCLIAGLSREGNVEGVRNI 421 (537)
Q Consensus 371 ~~~~~~~g~~~~A~~~~~~~~~--------------~~~~---------------p~~~~~~~l~~~~~~~~~~~~a~~~ 421 (537)
...|.-..+-+.....|+.... .+.. --..+|...+..-.+...++.|..+
T Consensus 340 se~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~ 419 (660)
T COG5107 340 SEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKL 419 (660)
T ss_pred HHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHH
Confidence 2233333332222222221110 0110 1234567777777788889999999
Q ss_pred HHHHHHCC-CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 422 MNELVNNG-MRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 422 ~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
|-+..+.+ +.+++.++++++.-++ .|++..|-.+|+--+. .++.+...-.-.+..+.+-++-+.|..+|+..++
T Consensus 420 F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~----~f~d~~~y~~kyl~fLi~inde~naraLFetsv~ 494 (660)
T COG5107 420 FIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL----KFPDSTLYKEKYLLFLIRINDEENARALFETSVE 494 (660)
T ss_pred HHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH----hCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHH
Confidence 99999987 5788889999998765 5788889999987653 2233334445667778888999999999997665
Q ss_pred cCCCCC--HHhHHHHHHHHHhcCCcCC
Q 047648 501 KGLIPN--QTTYQIVREEMMEKGFIPD 525 (537)
Q Consensus 501 ~g~~p~--~~~~~~l~~~~~~~g~~~~ 525 (537)
+ +..+ ..+|..+++-=..-|.+..
T Consensus 495 r-~~~~q~k~iy~kmi~YEs~~G~lN~ 520 (660)
T COG5107 495 R-LEKTQLKRIYDKMIEYESMVGSLNN 520 (660)
T ss_pred H-HHHhhhhHHHHHHHHHHHhhcchHH
Confidence 3 2223 4567777766556665543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.28 Score=45.54 Aligned_cols=97 Identities=15% Similarity=0.096 Sum_probs=76.5
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 047648 364 VITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGA 443 (537)
Q Consensus 364 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 443 (537)
..++..+..+|.+.+++..|+..-+..+..+.. |...+..-.+++...|+++.|+..|+++++.. |.|-.+-+-++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l 334 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKL 334 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 346777888999999999999999999988655 88888889999999999999999999999974 4445555566655
Q ss_pred HHhcCCh-HHHHHHHHHHHH
Q 047648 444 LCKDGKS-KKAVSLLDEMFK 462 (537)
Q Consensus 444 ~~~~g~~-~~A~~~~~~~~~ 462 (537)
--+.... +...++|..|..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 5555443 445788888875
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.77 Score=36.22 Aligned_cols=55 Identities=18% Similarity=0.163 Sum_probs=27.5
Q ss_pred HhcCCHHHHHHHHHHHHHCC--CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHch
Q 047648 410 SREGNVEGVRNIMNELVNNG--MRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKME 464 (537)
Q Consensus 410 ~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 464 (537)
.+.|++++|.+.|+.+...- -+-...+-..++.+|.+.|++++|...+++.+++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 44555555555555555441 01122344445555555555555555555555543
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.45 Score=42.87 Aligned_cols=162 Identities=7% Similarity=-0.014 Sum_probs=110.8
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH----HHHHHHhcCCH
Q 047648 270 CKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNA----LINGFCKKKLV 345 (537)
Q Consensus 270 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~----ll~~~~~~~~~ 345 (537)
-..|++.+|-..++++.+. .|.|..++...=.+|.-.|+.+.-...++++...- .+|...|.. ..-++..+|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhccc
Confidence 3568888888888998875 56688888888899999999999999998887641 244433332 23334578999
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047648 346 EKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDR---GVLPDVSTYNCLIAGLSREGNVEGVRNIM 422 (537)
Q Consensus 346 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 422 (537)
++|++.-++..+.+.. |...-.++...+--.|++.++.++..+-.+. +-..-..-|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 9999999988876533 5556667777788899999999887765432 10001112222333445668999999999
Q ss_pred HHHH-HCCCCCCh
Q 047648 423 NELV-NNGMRAGL 434 (537)
Q Consensus 423 ~~~~-~~~~~~~~ 434 (537)
++-+ +.--+.|.
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 7544 43224444
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.41 Score=46.52 Aligned_cols=156 Identities=16% Similarity=0.099 Sum_probs=85.4
Q ss_pred hccCCHHHHHHHHHHH-HhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047648 270 CKDENISAAMKVFEEM-GSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKA 348 (537)
Q Consensus 270 ~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 348 (537)
.-.++++++.++...- .-..+ +....+.++.-+.+.|-++.|+.+..+-. .-.+...+.|+++.|
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A 337 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIA 337 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHH
T ss_pred HHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHH
Confidence 3456666665555411 11111 23345666666777777777776553321 123445667777777
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047648 349 RVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNN 428 (537)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 428 (537)
.++.++. .+...|..|.+...+.|+++-|.+.+.+..+ +..|+-.|.-.|+.+...++.+.....
T Consensus 338 ~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 338 LEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 6654332 2566777777777777777777777766543 445555666777777777776666655
Q ss_pred CCCCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 047648 429 GMRAGLVTYNILVGALCKDGKSKKAVSLLDEM 460 (537)
Q Consensus 429 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 460 (537)
| -++....++.-.|+.++..+++.+.
T Consensus 403 ~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 403 G------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred c------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4 2455555666667777777766644
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.50 E-value=1 Score=36.05 Aligned_cols=42 Identities=19% Similarity=0.249 Sum_probs=19.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc
Q 047648 335 LINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKE 377 (537)
Q Consensus 335 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 377 (537)
++..+...+.......+++.+...+. .+...++.++..|++.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~ 54 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH
Confidence 33444444444455555554444432 2444455555555443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.46 E-value=3 Score=41.28 Aligned_cols=161 Identities=17% Similarity=0.069 Sum_probs=82.8
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHH------H----hCCCHHHHHHHHHHHHHcCCCCCHH
Q 047648 262 FNTLIDGFCKDENISAAMKVFEEMGSHG-IAAGVVTYNSLINGL------C----VDGKLDEAVALRDEMMASGLKPNVV 330 (537)
Q Consensus 262 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~------~----~~~~~~~A~~~~~~~~~~~~~~~~~ 330 (537)
+..+++...-.|+-+.+++.+.+..+.+ +. .+.+--.|+.-| + .....+.|.+++..+.+. -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~-~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIR-SPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcc-hHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcH
Confidence 4455666666677777777777655432 22 122211222111 1 133456677777776664 35544
Q ss_pred HHHHH-HHHHHhcCCHHHHHHHHHHHHHcC---CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047648 331 TSNAL-INGFCKKKLVEKARVLFDDISEQG---LSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLI 406 (537)
Q Consensus 331 ~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 406 (537)
.|... .+.+...|++++|.+.|+...... .......+--++-++.-..+|++|.+.|..+.+..-- +..+|..+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~ 346 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHH
Confidence 44333 344556677777777777544210 0112223334555566667777777777777665322 333443333
Q ss_pred HH-HHhcCCH-------HHHHHHHHHHH
Q 047648 407 AG-LSREGNV-------EGVRNIMNELV 426 (537)
Q Consensus 407 ~~-~~~~~~~-------~~a~~~~~~~~ 426 (537)
.+ +...++. ++|.++|.+..
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 32 2344555 56666666554
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.52 Score=36.12 Aligned_cols=93 Identities=16% Similarity=0.005 Sum_probs=73.1
Q ss_pred HHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhc
Q 047648 123 MLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLD---SFNFVLNGLCKA 199 (537)
Q Consensus 123 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~ 199 (537)
.-++...|+.+.|++.|.+.+.. .|...++||.-..++.-+|+.++|++-+++..+..-..... .|..-...|...
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 34678889999999999999876 35578899999999999999999999998887753222222 344445567788
Q ss_pred CChhHHHHHHHHHHhCC
Q 047648 200 GKLNKASDIMEDMKSLG 216 (537)
Q Consensus 200 g~~~~a~~~~~~~~~~~ 216 (537)
|+.+.|..-|+...+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 99999999999888776
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.37 E-value=1.1 Score=35.78 Aligned_cols=41 Identities=22% Similarity=0.186 Sum_probs=20.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 047648 192 VLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCK 233 (537)
Q Consensus 192 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 233 (537)
++..+...+.......+++.+...+. .+...++.++..|++
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 34444444555555555555554442 344455555555554
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.35 E-value=1.7 Score=37.93 Aligned_cols=61 Identities=13% Similarity=0.092 Sum_probs=40.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 439 ILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 439 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
.+...|.+.|.+-.|..-++++++- -...+-....+-.+..+|...|-.++|.+.-+-+..
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 3456678888888888888888752 111122344556666788888888888877666654
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.18 E-value=2 Score=37.56 Aligned_cols=222 Identities=18% Similarity=0.079 Sum_probs=129.0
Q ss_pred CCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047648 273 ENISAAMKVFEEMGSHGIA-AGVVTYNSLINGLCVDGKLDEAVALRDEMMAS-GLKPNVVTSNALINGFCKKKLVEKARV 350 (537)
Q Consensus 273 g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~ 350 (537)
+....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444444444444443211 12445555566666667777766666666542 123444555555666666666777777
Q ss_pred HHHHHHHcCCCCCHhHHHHHHH-HHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 351 LFDDISEQGLSPSVITYNTLID-AYCKEGRMEDAFAMRNSMLDRGV--LPDVSTYNCLIAGLSREGNVEGVRNIMNELVN 427 (537)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 427 (537)
.+.........+ ......... .+...|+++.|...+........ ......+......+...++.+.+...+.+...
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 777666543332 112222222 56777777777777777755321 11333344444445667778888888877777
Q ss_pred CCCCC-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 428 NGMRA-GLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 428 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
.. +. ....+..+...+...++++.|...+....... +.....+..+...+...+..+++...+++...
T Consensus 196 ~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 196 LN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD----PDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred hC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC----cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 53 23 35667777777777778888888887776522 11234445555555566677888887777776
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.078 Score=32.31 Aligned_cols=40 Identities=18% Similarity=0.061 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHH
Q 047648 117 IIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQL 157 (537)
Q Consensus 117 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 157 (537)
.++..+...|.+.|++++|.++|+++++.. |-|...+..+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence 356667788888888888888888888764 3355555444
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.47 Score=37.40 Aligned_cols=74 Identities=14% Similarity=-0.030 Sum_probs=43.7
Q ss_pred hcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhH
Q 047648 75 VAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSC 154 (537)
Q Consensus 75 ~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 154 (537)
+.|++.+|.+.++.+..+ ++..+-..-+.-.++.+|.+.+++++|+..+++.++.++......|
T Consensus 22 ~~~~Y~~A~~~le~L~~r----------------yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdY 85 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTR----------------YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDY 85 (142)
T ss_pred HhCCHHHHHHHHHHHHhc----------------CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccH
Confidence 555566665555555444 2221223344445777788888888888888887777655444556
Q ss_pred HHHHHHHHhC
Q 047648 155 NQLLRALVKE 164 (537)
Q Consensus 155 ~~l~~~~~~~ 164 (537)
...+.+++..
T Consensus 86 a~Y~~gL~~~ 95 (142)
T PF13512_consen 86 AYYMRGLSYY 95 (142)
T ss_pred HHHHHHHHHH
Confidence 6666655543
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.02 E-value=1.9 Score=39.48 Aligned_cols=129 Identities=13% Similarity=0.090 Sum_probs=70.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCCH----
Q 047648 333 NALINGFCKKKLVEKARVLFDDISEQG-----LSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDR----GVLPDV---- 399 (537)
Q Consensus 333 ~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~---- 399 (537)
.++..++...+.++++++.|+...+.- ......++..|...|.+..++++|.-+..+..+. ++. |.
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~ky 204 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKY 204 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHH
Confidence 335555566666666666666654421 1112345666667777777777766555544321 222 21
Q ss_pred --HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-ChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 400 --STYNCLIAGLSREGNVEGVRNIMNELVNN----GMRA-GLVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 400 --~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
.....+.-++...|.+..|.+..++..+. |-.+ .......+.+.|...|+.+.|..-|+.+..
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 12223334555667766666666665443 2111 123345566777778888887777776653
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.02 E-value=1.9 Score=39.56 Aligned_cols=205 Identities=12% Similarity=0.043 Sum_probs=120.7
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC---CHh
Q 047648 295 VTYNSLINGLCVDGKLDEAVALRDEMMAS--GLKP---NVVTSNALINGFCKKKLVEKARVLFDDISEQ-GLSP---SVI 365 (537)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~ 365 (537)
.++..+..+.++.|.+++++..--..+.. .... --..|..+.+++.+..++.+++.+-..-... |..| .-.
T Consensus 44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq 123 (518)
T KOG1941|consen 44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQ 123 (518)
T ss_pred HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccch
Confidence 34555556667777776665433221110 0001 1234445555555555555555554443332 2222 112
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCChHH
Q 047648 366 TYNTLIDAYCKEGRMEDAFAMRNSMLDR-----GVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNN----GMRAGLVT 436 (537)
Q Consensus 366 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~ 436 (537)
....+..++...+.++.+++.|+...+. +......++..+...|....++++|.-+..+..+. ++..-..-
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 3344677788888899999999887653 11123457888999999999999998877766543 22221222
Q ss_pred H-----HHHHHHHHhcCChHHHHHHHHHHHHchhc-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047648 437 Y-----NILVGALCKDGKSKKAVSLLDEMFKMEKE-KK-WPNIVTYNVLIKGFCQKGKLEDANGLLNELL 499 (537)
Q Consensus 437 ~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 499 (537)
| -.+.-++...|..-.|.+.-+++.++.-. |- ..-......+...|...|+.+.|..-|++..
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 3 23445677888888888888887663211 11 1123445667778888999888887776643
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.1 Score=31.79 Aligned_cols=28 Identities=21% Similarity=0.277 Sum_probs=13.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 047648 367 YNTLIDAYCKEGRMEDAFAMRNSMLDRG 394 (537)
Q Consensus 367 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 394 (537)
+..+...|.+.|++++|.++++++++..
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3444444555555555555555555443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.88 E-value=1.3 Score=43.23 Aligned_cols=133 Identities=14% Similarity=0.030 Sum_probs=59.2
Q ss_pred ChHHHHHHHhcCCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHH-------HHHHCCCCCChHH
Q 047648 28 DPNTVILQLFNSDADPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLH-------MFVKNGKFTSVST 100 (537)
Q Consensus 28 ~~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~-------~~~~~g~~~~~~~ 100 (537)
.+..+.-.+....++.+.+++......-.+..| ..-.+.++.-+.+.|..+.|..+.. ..++.|+.+.|.+
T Consensus 262 d~~~~~fk~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~ 339 (443)
T PF04053_consen 262 DLSELEFKTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALE 339 (443)
T ss_dssp -HHHHHHHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHH
T ss_pred CHHHHHHHHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHH
Confidence 334343344455566777666554222112223 3447888999999999999888743 3334444333322
Q ss_pred HHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHh
Q 047648 101 IFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKR 179 (537)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 179 (537)
+.+ ...++..|..|.....++|+++-|.+.|.+..+ +..|+-.|.-.|+.+...++-+....
T Consensus 340 ~a~--------~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 340 IAK--------ELDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HCC--------CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHH--------hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 211 012334455555555555555555555544432 23334444444444444444444433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.59 Score=41.14 Aligned_cols=97 Identities=14% Similarity=0.124 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHhCCChhHHHHHHHHHHhCCC--CCCHHHHHH
Q 047648 117 IIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSS---VLSCNQLLRALVKEGKFEDVEYVYKEMKRRRI--ELNLDSFNF 191 (537)
Q Consensus 117 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ 191 (537)
..|+.-+ .+...|++..|.+.|...++.. |-+ ..++--|..++...|++++|..+|..+.+.-. +--+..+-.
T Consensus 143 ~~Y~~A~-~~~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 143 KLYNAAL-DLYKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHH-HHHHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 3555444 4556778999999999988763 222 23455578899999999999999988877532 113467778
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 047648 192 VLNGLCKAGKLNKASDIMEDMKSL 215 (537)
Q Consensus 192 l~~~~~~~g~~~~a~~~~~~~~~~ 215 (537)
|..+..+.|+.++|...|+++.+.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 888888999999999999999887
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.55 E-value=2.8 Score=36.27 Aligned_cols=192 Identities=13% Similarity=0.103 Sum_probs=99.4
Q ss_pred HHHhcCCCChHHHHHHHHHHhhc----CCCCCCHHHHHHHHHHHHhcCCchHHHHHHH----HHHHCCCCCChHHHHHHh
Q 047648 34 LQLFNSDADPVLILRYFCWSTKE----LRASHSLLLTGRLLHSLVVAKKYPKIRSFLH----MFVKNGKFTSVSTIFHAL 105 (537)
Q Consensus 34 ~~l~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~----~~~~~g~~~~~~~~~~~~ 105 (537)
++-++..++++.|..-+..+.+- ...-|....|...+-.+-....+.++..+++ .|+++|..+.+...++..
T Consensus 38 AvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 38 AVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHH
Confidence 45667777788877766666532 1222344445444444444455555544443 345555544444333322
Q ss_pred hhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhhC---C--CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 047648 106 STCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDY---G--LKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRR 180 (537)
Q Consensus 106 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 180 (537)
.. ...+.++++|+++|++.... + ..--...+....+.+++..++++|-..+.+-...
T Consensus 118 ak------------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~ 179 (308)
T KOG1585|consen 118 AK------------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVA 179 (308)
T ss_pred HH------------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhH
Confidence 21 23455667777777665432 0 0011223445555666667776665554432211
Q ss_pred ----CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCCChhhHHHHHHHHhcCCCCCCHHHHHHHH
Q 047648 181 ----RIELNL-DSFNFVLNGLCKAGKLNKASDIMEDMKSLG---VSPKVVTYNILIDGYCKKGGIGKMYKADAVF 247 (537)
Q Consensus 181 ----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~ 247 (537)
.--++. ..|...|-.+.-..++..|.+.++.-.+.+ -+-+..+...|+.+|-. |+.+++.+++
T Consensus 180 ~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~----gD~E~~~kvl 250 (308)
T KOG1585|consen 180 ADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDE----GDIEEIKKVL 250 (308)
T ss_pred HHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhcc----CCHHHHHHHH
Confidence 011121 234455556666778888888887744432 22355667777777754 6666655443
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.35 Score=42.39 Aligned_cols=105 Identities=22% Similarity=0.288 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCC
Q 047648 183 ELNLDSFNFVLNGLCKA-----GKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILP 257 (537)
Q Consensus 183 ~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p 257 (537)
+.|..+|...+..+... +.++-....+..|.+.|+..|..+|+.|++.+-+ |.+- -..+|+
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPK----gkfi-P~nvfQ--------- 129 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPK----GKFI-PQNVFQ--------- 129 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcc----cccc-cHHHHH---------
Confidence 34666777777666543 4556666667777777887788888887777765 2210 001111
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCC
Q 047648 258 NEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGK 309 (537)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 309 (537)
...-.|- .+-+-+++++++|...|+.||-.+-..+++++.+.+-
T Consensus 130 ------~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 130 ------KVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred ------HHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 1111111 1223456666677767777776666666666666554
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.45 E-value=2.5 Score=35.84 Aligned_cols=204 Identities=16% Similarity=0.070 Sum_probs=117.4
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHH
Q 047648 304 LCVDGKLDEAVALRDEMMASGLKPN-VVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMED 382 (537)
Q Consensus 304 ~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 382 (537)
|-..|-+.-|.--|.+.... .|+ +..||.+.-.+...|+++.|.+.|+...+.++.-+....|.-+ ++.-.|++.-
T Consensus 75 YDSlGL~~LAR~DftQaLai--~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~L 151 (297)
T COG4785 75 YDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKL 151 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhc--CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHh
Confidence 44556666677667666653 454 5778888888889999999999999998876554444444333 2335689999
Q ss_pred HHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHH-HHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHH
Q 047648 383 AFAMRNSMLDRGVLPDV--STYNCLIAGLSREGNVEGVRNIM-NELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDE 459 (537)
Q Consensus 383 A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 459 (537)
|.+-+...-..++. |+ ..|-.+. ...-++.+|..-+ ++... .|..-|...+-.|.- |+.. ...++++
T Consensus 152 Aq~d~~~fYQ~D~~-DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~----~d~e~WG~~iV~~yL-gkiS-~e~l~~~ 221 (297)
T COG4785 152 AQDDLLAFYQDDPN-DPFRSLWLYLN---EQKLDPKQAKTNLKQRAEK----SDKEQWGWNIVEFYL-GKIS-EETLMER 221 (297)
T ss_pred hHHHHHHHHhcCCC-ChHHHHHHHHH---HhhCCHHHHHHHHHHHHHh----ccHhhhhHHHHHHHH-hhcc-HHHHHHH
Confidence 98887777766544 33 2333332 2334555665444 33332 233344433333221 2211 1223333
Q ss_pred HHHchhcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 047648 460 MFKMEKEK---KWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMMEKG 521 (537)
Q Consensus 460 ~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 521 (537)
+......+ ...=..+|--+..-+...|+.++|..+|+-.+..++. +.+-++-.+-.+.+.|
T Consensus 222 ~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVy-nfVE~RyA~~EL~~l~ 285 (297)
T COG4785 222 LKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVY-NFVEHRYALLELSLLG 285 (297)
T ss_pred HHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHhc
Confidence 32211000 0012457888888999999999999999999875443 3333333333333333
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.58 Score=41.83 Aligned_cols=78 Identities=17% Similarity=0.242 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHh
Q 047648 435 VTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLE-----KGLIPNQTT 509 (537)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~ 509 (537)
.++..++..+...|+.+.+.+.+++.+... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d----p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~ 229 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD----PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPEL 229 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC----ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHH
Confidence 344555556666666666666666665433 33555666666666666666666666665544 466666665
Q ss_pred HHHHHHH
Q 047648 510 YQIVREE 516 (537)
Q Consensus 510 ~~~l~~~ 516 (537)
.....+.
T Consensus 230 ~~~y~~~ 236 (280)
T COG3629 230 RALYEEI 236 (280)
T ss_pred HHHHHHH
Confidence 5555544
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.87 Score=46.34 Aligned_cols=175 Identities=14% Similarity=0.166 Sum_probs=81.5
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHH----HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047648 263 NTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLI----NGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALING 338 (537)
Q Consensus 263 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 338 (537)
..-+....+...++-|+.+-+.- + .+..+...++ +-+.+.|++++|..-|-+-... +.| ..++.-
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~---~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~k 406 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQ---H--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKK 406 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhc---C--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHH
Confidence 34455555555555555543322 1 1222222222 2334566666666655554432 122 123344
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047648 339 FCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGV 418 (537)
Q Consensus 339 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 418 (537)
|........-..+++.+.+.|.. +...-..|+.+|.+.++.++-.++.+..- .|.. ..-....+..+.+.+-.++|
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 44455555555666666666555 44455556666666666665544443332 1111 11123344445555555555
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 047648 419 RNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEM 460 (537)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 460 (537)
..+-.+... +..... -.+-..|++++|++.++.+
T Consensus 483 ~~LA~k~~~-----he~vl~---ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWVLD---ILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcc-----CHHHHH---HHHHHhcCHHHHHHHHhcC
Confidence 544433221 112222 2233445666666666654
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.28 E-value=9.3 Score=41.11 Aligned_cols=127 Identities=12% Similarity=0.162 Sum_probs=56.3
Q ss_pred HHHHHHHHcCCchHHHHHHHHHhh-CCC--CCChhhHHHHHHHHHhC-CChhHHHHHHHHHHhCCCCCCHHHHH----HH
Q 047648 121 MLMLAYVKNMKPHLGFEAFKRAGD-YGL--KSSVLSCNQLLRALVKE-GKFEDVEYVYKEMKRRRIELNLDSFN----FV 192 (537)
Q Consensus 121 ~l~~~~~~~g~~~~A~~~~~~~~~-~~~--~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~----~l 192 (537)
.-++-++..+++.+|+++-++-+- .++ ..+...|..-+.++.+. ++.+-...++..+....+. ...|. +-
T Consensus 682 a~vr~~l~~~~y~~AF~~~RkhRidlnii~d~~~~~Fl~nv~afl~~in~~~~l~lfl~~lk~eDvt--k~~y~~~~~s~ 759 (1265)
T KOG1920|consen 682 AKVRTLLDRLRYKEAFEVMRKHRIDLNIIFDYDPKRFLKNVPAFLKQINRVNHLELFLTELKEEDVT--KTMYSSTSGSG 759 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCccchhhcCHHHHHhhHHHHhccCCcHHHHHHHHhhcccchhh--hhhcccccccc
Confidence 455677888888888776665431 111 11223333334444443 3444444444444432211 11111 00
Q ss_pred HHHHHhcC----ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 047648 193 LNGLCKAG----KLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVE 252 (537)
Q Consensus 193 ~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~ 252 (537)
...|.... .++...+.+.....+ ..|+ .....+|..|.+.. ...+++++....+...
T Consensus 760 k~~~~~r~~~d~kv~~vc~~vr~~l~~-~~~~-~~~~~ilTs~vk~~-~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 760 KQVYMSRDPYDNKVNSVCDAVRNALER-RAPD-KFNLFILTSYVKSN-PPEIEEALQKIKELQL 820 (1265)
T ss_pred ceeEEeccchhhHHHHHHHHHHHHHhh-cCcc-hhhHHHHHHHHhcC-cHHHHHHHHHHHHHHh
Confidence 01111111 222233333333333 2344 44556777777722 2366777766666654
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.18 E-value=6.4 Score=38.90 Aligned_cols=387 Identities=12% Similarity=0.008 Sum_probs=195.2
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047648 117 IIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGL 196 (537)
Q Consensus 117 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 196 (537)
..|..++.---...+.+.+..++..++.. .|.----|......-.+.|..+.+.++|++.... ++.+...|......+
T Consensus 46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~k-yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~ 123 (577)
T KOG1258|consen 46 DAWTTLIQENDSIEDVDALREVYDIFLSK-YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFL 123 (577)
T ss_pred cchHHHHhccCchhHHHHHHHHHHHHHhh-CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHH
Confidence 34444444333333444555555555532 2222224555555555666666667777666543 444555555444333
Q ss_pred H-hcCChhHHHHHHHHHHhC-CCC-CChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh---
Q 047648 197 C-KAGKLNKASDIMEDMKSL-GVS-PKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFC--- 270 (537)
Q Consensus 197 ~-~~g~~~~a~~~~~~~~~~-~~~-~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~--- 270 (537)
. ..|+.+...+.|+...+. |.. .+...|...|.--.. ..++.....++++.++. | ...|+..-.-|.
T Consensus 124 ~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~---qks~k~v~~iyeRilei---P-~~~~~~~f~~f~~~l 196 (577)
T KOG1258|consen 124 KNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENG---QKSWKRVANIYERILEI---P-LHQLNRHFDRFKQLL 196 (577)
T ss_pred hccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhc---cccHHHHHHHHHHHHhh---h-hhHhHHHHHHHHHHH
Confidence 2 345666666666665543 221 234445555555444 56666666666666553 1 111111111111
Q ss_pred cc------CCHHHHHHHHHHHHh--------------------CCCCCCh--hhHHHHH-------HHHHhCCCHHHHHH
Q 047648 271 KD------ENISAAMKVFEEMGS--------------------HGIAAGV--VTYNSLI-------NGLCVDGKLDEAVA 315 (537)
Q Consensus 271 ~~------g~~~~a~~~~~~~~~--------------------~~~~~~~--~~~~~l~-------~~~~~~~~~~~A~~ 315 (537)
+. ...+++.++-..... .+.+.+. ...+.+- .++-..........
T Consensus 197 ~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~ 276 (577)
T KOG1258|consen 197 NQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRW 276 (577)
T ss_pred hcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHH
Confidence 11 112222222211110 0000000 0011111 11112222233333
Q ss_pred HHHHHHHcC---CC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 047648 316 LRDEMMASG---LK----PNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRN 388 (537)
Q Consensus 316 ~~~~~~~~~---~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 388 (537)
.++.-.+.. ++ ++..+|..-+..-.+.|+.+.+..+|+...-- +..-...|-..+.-....|+.+-|..++.
T Consensus 277 ~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~ 355 (577)
T KOG1258|consen 277 GFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLA 355 (577)
T ss_pred hhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHH
Confidence 333333321 12 24567888888888999999999999887542 11123345455555556688888888877
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHHhcCChHHHH---HHHHHHHHch
Q 047648 389 SMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAG-LVTYNILVGALCKDGKSKKAV---SLLDEMFKME 464 (537)
Q Consensus 389 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~ 464 (537)
...+-..+-.+.+--.-.......|++..|..+++.+...- |+ ...-..-+....+.|..+.+. +++....+
T Consensus 356 ~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-- 431 (577)
T KOG1258|consen 356 RACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-- 431 (577)
T ss_pred hhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc--
Confidence 76665433233322222223445789999999999998863 44 333344455667788888877 44444432
Q ss_pred hcCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 047648 465 KEKKWPNIVTYNVLIKG-----FCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMMEKG 521 (537)
Q Consensus 465 ~~~~~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 521 (537)
+ .-+......+.-- +.-.++.+.|..++.++.+. +.++...|..+++-....+
T Consensus 432 --~-~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 432 --G-KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred --c-ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 1 1222333333322 23368899999999999883 3334555666666554444
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.74 Score=41.19 Aligned_cols=77 Identities=13% Similarity=0.164 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCChHHHHHH
Q 047648 366 TYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVN-----NGMRAGLVTYNIL 440 (537)
Q Consensus 366 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 440 (537)
++..++..+...|+++.+...++++....+. +...|..+|.+|.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 5566677777777777777777777776555 666777777777777777777777776665 2666665555544
Q ss_pred HHH
Q 047648 441 VGA 443 (537)
Q Consensus 441 ~~~ 443 (537)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=93.93 E-value=8.9 Score=39.64 Aligned_cols=190 Identities=11% Similarity=0.132 Sum_probs=103.7
Q ss_pred HHHHHHHHhhcCCCCCC--HHHHHHHHHHHH-hcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHH
Q 047648 46 ILRYFCWSTKELRASHS--LLLTGRLLHSLV-VAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDML 122 (537)
Q Consensus 46 a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~-~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 122 (537)
|+..++.+.+....+|. ..++-.+..+|. ...+++.|+..+......-.-..-.++ . -.....+
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~----k---------~~~~~ll 106 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL----K---------FRCQFLL 106 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH----H---------HHHHHHH
Confidence 55666666654333333 335677778877 577899998888754432110100000 0 0222345
Q ss_pred HHHHHHcCCchHHHHHHHHHhhC----CCCCChhhHHHH-HHHHHhCCChhHHHHHHHHHHhCC---CCCCHHHHHHHHH
Q 047648 123 MLAYVKNMKPHLGFEAFKRAGDY----GLKSSVLSCNQL-LRALVKEGKFEDVEYVYKEMKRRR---IELNLDSFNFVLN 194 (537)
Q Consensus 123 ~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~ 194 (537)
++.+.+.+... |...+++.++. +..+-...+..+ +..+...+++..|.+.++.+...- ..|...++..++.
T Consensus 107 ~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~ 185 (608)
T PF10345_consen 107 ARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSE 185 (608)
T ss_pred HHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHH
Confidence 66666666555 88888887654 112223334433 223333478999999988876532 2334445555555
Q ss_pred HHH--hcCChhHHHHHHHHHHhCCC---------CCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 047648 195 GLC--KAGKLNKASDIMEDMKSLGV---------SPKVVTYNILIDGYCKKGGIGKMYKADAVFKDM 250 (537)
Q Consensus 195 ~~~--~~g~~~~a~~~~~~~~~~~~---------~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~ 250 (537)
+.. +.+..+++.+.++++..... .|-..+|..++..++.-. .|++..+...++++
T Consensus 186 ~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~-~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 186 ALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQ-QGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHH
Confidence 544 44666777777777643211 234556777766655422 45655555554444
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.87 E-value=5 Score=36.58 Aligned_cols=167 Identities=11% Similarity=0.034 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047648 330 VTSNALINGFCKKKLVE---KARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLI 406 (537)
Q Consensus 330 ~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 406 (537)
.++..++.+|...+..+ +|..+++.+...... .+.++..-+..+.+.++.+.+.+++.+|+..-.. ....+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHHH
Confidence 34566666676666543 445555555443222 2344444555666677788888888888775221 222333333
Q ss_pred HHH---HhcCCHHHHHHHHHHHHHCCCCCChH-HH-HHHHH---HHHhcCC------hHHHHHHHHHHHHchhcCCCCC-
Q 047648 407 AGL---SREGNVEGVRNIMNELVNNGMRAGLV-TY-NILVG---ALCKDGK------SKKAVSLLDEMFKMEKEKKWPN- 471 (537)
Q Consensus 407 ~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~-~~-~~l~~---~~~~~g~------~~~A~~~~~~~~~~~~~~~~~~- 471 (537)
..+ .. .....+...+..++...+.|... .. ..++. .....++ .+...+++..+.+.......+.
T Consensus 163 ~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 333 33 23345555555555443444432 11 11111 1112111 3333344443322122222221
Q ss_pred HHHHHHHH----HHHHhcCCHHHHHHHHHHHH
Q 047648 472 IVTYNVLI----KGFCQKGKLEDANGLLNELL 499 (537)
Q Consensus 472 ~~~~~~l~----~~~~~~g~~~~A~~~~~~~~ 499 (537)
.....+++ ..+.+.+++++|.+.|+-.+
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 12222222 34566889999999988654
|
It is also involved in sporulation []. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.18 Score=28.46 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 474 TYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
+|..+..+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455566666666666666666666665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.85 E-value=5.2 Score=36.68 Aligned_cols=128 Identities=13% Similarity=0.195 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--cC----CHHHHHHHHHHHHhCCC---CCChhhHHHHHHHHHhCCC--
Q 047648 241 YKADAVFKDMVENGILPNEVTFNTLIDGFCK--DE----NISAAMKVFEEMGSHGI---AAGVVTYNSLINGLCVDGK-- 309 (537)
Q Consensus 241 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~g----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~-- 309 (537)
++.+.+++.|.+.|+.-+..+|.+....... .. ....|..+|+.|.+... .++..++..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3445556666666665555444432222221 11 23455666666665421 1223333333322 2222
Q ss_pred --HHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHhHHHHH
Q 047648 310 --LDEAVALRDEMMASGLKPNV--VTSNALINGFCKKKL--VEKARVLFDDISEQGLSPSVITYNTL 370 (537)
Q Consensus 310 --~~~A~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l 370 (537)
.+.+..+|+.+.+.|+..+. ...+.++........ ..++..+++.+.+.|+++....|..+
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 23445555555555543321 222222222221111 23555555666666555555554433
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.64 E-value=3.3 Score=33.74 Aligned_cols=126 Identities=12% Similarity=0.094 Sum_probs=61.4
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh-hHHHHHHHHhcCCCCCC
Q 047648 162 VKEGKFEDVEYVYKEMKRRRIELNLD-SFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVV-TYNILIDGYCKKGGIGK 239 (537)
Q Consensus 162 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~ 239 (537)
.+.+..++|+.-|..+.+.|..--+. ....+.......|+...|...|+++-.....|-.. -...|=.+|.. -+.|.
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lL-vD~gs 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLL-VDNGS 147 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHH-hcccc
Confidence 44555666666666666654431111 11122233455666666666666665543223222 11111112211 11566
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 047648 240 MYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSH 288 (537)
Q Consensus 240 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 288 (537)
++......+.+-..+-+.-...-..|.-+-.+.|++..|.++|..+...
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 6665555555444333333344455555666677777777777666553
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.54 E-value=9.6 Score=38.77 Aligned_cols=113 Identities=15% Similarity=0.193 Sum_probs=85.9
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 047648 363 SVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVG 442 (537)
Q Consensus 363 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 442 (537)
.-.+.+--+.-+...|+..+|.++-.+.. -||...|-.-+.+++..+++++.+++-+... .+.-|.-.+.
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe 752 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVE 752 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHH
Confidence 33445556666778899999988777664 4688999999999999999998877665543 2456777899
Q ss_pred HHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047648 443 ALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNE 497 (537)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 497 (537)
+|.+.|+.++|.+++-+.. +.. -...+|.+.|++.+|.++.-+
T Consensus 753 ~c~~~~n~~EA~KYiprv~--------~l~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVG--------GLQ----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHhcccHHHHhhhhhccC--------ChH----HHHHHHHHhccHHHHHHHHHH
Confidence 9999999999999987662 221 567889999999998876443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.53 E-value=4.7 Score=35.11 Aligned_cols=201 Identities=16% Similarity=0.072 Sum_probs=110.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 047648 260 VTFNTLIDGFCKDENISAAMKVFEEMGSH-GIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALIN- 337 (537)
Q Consensus 260 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~- 337 (537)
..+......+...+++..+...+...... ........+......+...+++..+.+.+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 44444555555555555555555554431 122334444445555555555666666666655532222 111112222
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 047648 338 GFCKKKLVEKARVLFDDISEQGL--SPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNV 415 (537)
Q Consensus 338 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 415 (537)
.+...|+++.+...+.+...... ......+......+...++.+.+...+..............+..+...+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 56666667777666666644211 1122233333334556677777777777777653221355666777777777778
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 416 EGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 416 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
+.+...+....... +.....+..+...+...+..+.+...+.....
T Consensus 219 ~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 219 EEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888887777653 11234444444445566678888888877765
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.34 E-value=3 Score=32.28 Aligned_cols=63 Identities=11% Similarity=0.216 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 047648 332 SNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGV 395 (537)
Q Consensus 332 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 395 (537)
+...+......|.-++-.+++..+.+. -.+++...-.+..+|.+.|+..++.+++.+.-+.|+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 333444455555555555555555431 234455555555555555555555555555555543
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.23 Score=28.57 Aligned_cols=27 Identities=26% Similarity=0.278 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 474 TYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
+|..|...|.+.|++++|++++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 366777888888888888888888553
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.22 E-value=4 Score=33.46 Aligned_cols=32 Identities=9% Similarity=0.418 Sum_probs=16.7
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 047648 173 VYKEMKRRRIELNLDSFNFVLNGLCKAGKLNK 204 (537)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 204 (537)
.++.+.+.+++|+...+..++..+.+.|++..
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 33444445555555555555555555555443
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=93.21 E-value=12 Score=38.77 Aligned_cols=410 Identities=12% Similarity=0.087 Sum_probs=207.0
Q ss_pred HHHHHHHHHHH-HcCCchHHHHHHHHHhhCCCCCChh-----hHHHHHHHHHhCCChhHHHHHHHHHHhCC----CCCCH
Q 047648 117 IIIDMLMLAYV-KNMKPHLGFEAFKRAGDYGLKSSVL-----SCNQLLRALVKEGKFEDVEYVYKEMKRRR----IELNL 186 (537)
Q Consensus 117 ~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~ 186 (537)
.+.--++..+. ...+++.|...+++.....-.++.. .-..++..+.+.+... |...+++.++.- ..+-.
T Consensus 60 ~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~ 138 (608)
T PF10345_consen 60 RVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWY 138 (608)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHH
Confidence 34445666665 6789999999999886543233322 2234556666666655 888888866531 22223
Q ss_pred HHHHHH-HHHHHhcCChhHHHHHHHHHHhCC---CCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCC--------
Q 047648 187 DSFNFV-LNGLCKAGKLNKASDIMEDMKSLG---VSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENG-------- 254 (537)
Q Consensus 187 ~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~-------- 254 (537)
..|..+ +..+...++...|.+.++.+.... ..|...++..++.+..... .+..+++.+.++++....
T Consensus 139 ~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~-~~~~~d~~~~l~~~~~~~~~~q~~~~ 217 (608)
T PF10345_consen 139 YAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLR-RGSPDDVLELLQRAIAQARSLQLDPS 217 (608)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc-CCCchhHHHHHHHHHHHHhhcccCCC
Confidence 333443 333334489999999999887642 2344455555555554421 455566666666663321
Q ss_pred -CCCCHHHHHHHHHHHh--ccCCHHHHHHHHHHHHh-------CC----------CC-------------CChhhH----
Q 047648 255 -ILPNEVTFNTLIDGFC--KDENISAAMKVFEEMGS-------HG----------IA-------------AGVVTY---- 297 (537)
Q Consensus 255 -~~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~-------~~----------~~-------------~~~~~~---- 297 (537)
..|-..+|..+++.++ ..|+++.+...++++.+ .. ++ +....|
T Consensus 218 ~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~ 297 (608)
T PF10345_consen 218 VHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKE 297 (608)
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHH
Confidence 1345566777766544 66787777766655532 10 00 111111
Q ss_pred -----HHHHH--HHHhCCCHHHHHHHHHHHHH--------cCCCCC--------HHHHHHHHHH---------HHhcCCH
Q 047648 298 -----NSLIN--GLCVDGKLDEAVALRDEMMA--------SGLKPN--------VVTSNALING---------FCKKKLV 345 (537)
Q Consensus 298 -----~~l~~--~~~~~~~~~~A~~~~~~~~~--------~~~~~~--------~~~~~~ll~~---------~~~~~~~ 345 (537)
..++. ..+..+..++|.+++++..+ ....+. ...|...+.. .+-.+++
T Consensus 298 ~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~ 377 (608)
T PF10345_consen 298 ELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDW 377 (608)
T ss_pred HHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCH
Confidence 11112 22344544455555554332 111111 1112222222 2346889
Q ss_pred HHHHHHHHHHHHcCC-CCC-------HhHHHHHHHHHHhcCChHHHHHHHH--------HHHhCCCCCCHHHHHHH--HH
Q 047648 346 EKARVLFDDISEQGL-SPS-------VITYNTLIDAYCKEGRMEDAFAMRN--------SMLDRGVLPDVSTYNCL--IA 407 (537)
Q Consensus 346 ~~a~~~~~~~~~~~~-~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~p~~~~~~~l--~~ 407 (537)
..|...+..+.+... .|+ +..+....-.+...|+.+.|...|. .....+...+..++..+ +.
T Consensus 378 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~ 457 (608)
T PF10345_consen 378 SKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAI 457 (608)
T ss_pred HHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHH
Confidence 999999998875411 111 2222223333446799999999998 44455555444444332 11
Q ss_pred HHHh--cCCHHH--HHHHHHHHHHC-CCCCC--hHHHHHH-HHHHHhcCC--hHHHHHHHHHHHHch--hcCCCC-CHHH
Q 047648 408 GLSR--EGNVEG--VRNIMNELVNN-GMRAG--LVTYNIL-VGALCKDGK--SKKAVSLLDEMFKME--KEKKWP-NIVT 474 (537)
Q Consensus 408 ~~~~--~~~~~~--a~~~~~~~~~~-~~~~~--~~~~~~l-~~~~~~~g~--~~~A~~~~~~~~~~~--~~~~~~-~~~~ 474 (537)
.+.. ....++ +..+++.+... .-.|+ ..++..+ +.++..... ..++...+.+.++.- ..+..- -..+
T Consensus 458 I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~ 537 (608)
T PF10345_consen 458 ILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQLLAIL 537 (608)
T ss_pred HhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchHHHHH
Confidence 2222 222333 67777766543 11222 2333333 333332222 236666665555432 111111 1122
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C--CHHhHH-----HHHHHHHhcCCcCCccCC
Q 047648 475 YNVLIKGFCQKGKLEDANGLLNELLEKGLI-P--NQTTYQ-----IVREEMMEKGFIPDIEGH 529 (537)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-p--~~~~~~-----~l~~~~~~~g~~~~a~~~ 529 (537)
++.+...+. .|+..+..+.........-+ | ....|. .+.+.+...|..++|...
T Consensus 538 L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~ 599 (608)
T PF10345_consen 538 LNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEA 599 (608)
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 333333333 78887766665554432111 2 334453 334457778888877654
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.14 E-value=1.7 Score=36.28 Aligned_cols=61 Identities=21% Similarity=0.272 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047648 366 TYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPD--VSTYNCLIAGLSREGNVEGVRNIMNELV 426 (537)
Q Consensus 366 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 426 (537)
.+..+...|++.|+.+.|++.+.++.+....+. ...+..+++.....+++..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344455555555555555555555554422222 1233444444445555555555444443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.08 E-value=3.3 Score=32.05 Aligned_cols=60 Identities=13% Similarity=0.210 Sum_probs=26.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047648 369 TLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNG 429 (537)
Q Consensus 369 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 429 (537)
..+..+...|+-+.-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3344444455555555555554432 23345555555555555555555555555555444
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.08 E-value=4.2 Score=33.32 Aligned_cols=101 Identities=14% Similarity=0.249 Sum_probs=45.8
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 047648 207 DIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMG 286 (537)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 286 (537)
+++..+.+.+++|+...+..+++.+.+ .|++. .+.++...++-+|+......+-.+. +....+.++=-+|.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~---~~~~~----~L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDML 85 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIR---NGQFS----QLHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDML 85 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHH---cCCHH----HHHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHH
Confidence 344444555566666666666666666 44433 2444444455445443333222221 12222333333333
Q ss_pred hCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 047648 287 SHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEM 320 (537)
Q Consensus 287 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 320 (537)
++ =...+..++..+...|++-+|+++....
T Consensus 86 kR----L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 86 KR----LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred HH----hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 22 0012344555555666666666555543
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.26 Score=27.67 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 474 TYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
.|..+..++...|++++|++.+++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566666666666666666666666
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.24 Score=28.55 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 436 TYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 436 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
+|..|...|.+.|++++|+++|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 366778888888888888888888654
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=92.99 E-value=8.4 Score=36.52 Aligned_cols=52 Identities=13% Similarity=0.224 Sum_probs=24.0
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047648 158 LRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMK 213 (537)
Q Consensus 158 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 213 (537)
+.+..+.|+++...+........ .++...+..+... ..|+.+++...++...
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r 56 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--RQGDYDEAKKYIEKAR 56 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHH
Confidence 34455556666544444333322 1233333333322 5566666666655554
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.94 E-value=9.5 Score=36.99 Aligned_cols=57 Identities=18% Similarity=0.095 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 047648 334 ALINGFCKKKLVEKARVLFDDISEQGLS-PSVITYNTLIDAYCKEGRMEDAFAMRNSM 390 (537)
Q Consensus 334 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 390 (537)
.+..++-+.|+.++|.+.+.++.+.... .+..+...|+.++...+.+.++..++.+-
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3444444555555555555555443211 12223444555555555555555555554
|
The molecular function of this protein is uncertain. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.92 E-value=7.4 Score=35.69 Aligned_cols=140 Identities=14% Similarity=0.183 Sum_probs=84.2
Q ss_pred hhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcC---CCCCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHhccCC-
Q 047648 202 LNKASDIMEDMKSLGVSPKVVTYNILIDGYCKK---GGIGKMYKADAVFKDMVENGI---LPNEVTFNTLIDGFCKDEN- 274 (537)
Q Consensus 202 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---~~~~~~~~a~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~- 274 (537)
+++...+++.|.+.|+..+..+|-+........ .......++..+++.|++... .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 345667788888888887776665533333220 001235568889999988753 2344556565544 3333
Q ss_pred ---HHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHhCCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 047648 275 ---ISAAMKVFEEMGSHGIAAGV--VTYNSLINGLCVDGK--LDEAVALRDEMMASGLKPNVVTSNALINGFCKKK 343 (537)
Q Consensus 275 ---~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 343 (537)
.+.+..+|+.+.+.|...+- ...+.++........ ..++.++++.+.+.|+++....|..+.-...-.+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~ 231 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLED 231 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCC
Confidence 35677788888887765443 233333332222222 4578889999999999888777766544443333
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.73 E-value=2.8 Score=35.07 Aligned_cols=64 Identities=14% Similarity=0.102 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047648 330 VTSNALINGFCKKKLVEKARVLFDDISEQGLSPS--VITYNTLIDAYCKEGRMEDAFAMRNSMLDR 393 (537)
Q Consensus 330 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 393 (537)
..+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+++.....+++..+...+.+....
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5667778888888888888888888777643332 234556677777778888777777666543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.16 Score=28.76 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=15.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHH
Q 047648 469 WPNIVTYNVLIKGFCQKGKLEDAN 492 (537)
Q Consensus 469 ~~~~~~~~~l~~~~~~~g~~~~A~ 492 (537)
+-|+.+|..+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 335666666666666666666664
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.62 E-value=11 Score=36.69 Aligned_cols=58 Identities=16% Similarity=0.131 Sum_probs=32.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 047648 403 NCLIAGLSREGNVEGVRNIMNELVNNGMR-AGLVTYNILVGALCKDGKSKKAVSLLDEM 460 (537)
Q Consensus 403 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 460 (537)
..+..++.+.|+.++|++.+++|.+.... ....+...|+.++...+.+.++..++.+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 34445555666666666666666554211 12335555666666666666666666654
|
The molecular function of this protein is uncertain. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=92.59 E-value=2.1 Score=36.07 Aligned_cols=81 Identities=15% Similarity=0.060 Sum_probs=54.9
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHH
Q 047648 410 SREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLE 489 (537)
Q Consensus 410 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 489 (537)
.+.|+ +.|.+.|-++...+.-.++.....|...|. ..+.++++.++.+++++...+-.+|+..+.+|+..+.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34444 566777767766654444554455544444 6678888888888887766665778888888888888888877
Q ss_pred HHH
Q 047648 490 DAN 492 (537)
Q Consensus 490 ~A~ 492 (537)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 763
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=92.56 E-value=10 Score=36.40 Aligned_cols=120 Identities=11% Similarity=0.158 Sum_probs=85.7
Q ss_pred HCCCCCCh-HHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhH
Q 047648 91 KNGKFTSV-STIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFED 169 (537)
Q Consensus 91 ~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 169 (537)
..|+...+ .+++..+.. + +..++........+...|+++.+++.+....+. +.....+...+++...+.|++++
T Consensus 301 ~~gd~~aas~~~~~~lr~-~---~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 301 ADGDIIAASQQLFAALRN-Q---QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred hccCHHHHHHHHHHHHHh-C---CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHH
Confidence 34555433 334444443 2 333344444445567789999999988877654 34566788899999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 047648 170 VEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLG 216 (537)
Q Consensus 170 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 216 (537)
|...-+.|....++ +.++........-..|-++++.-.|.++....
T Consensus 376 a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 376 ALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 99999999988776 66666666666667788999999999987664
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=92.28 E-value=15 Score=37.81 Aligned_cols=61 Identities=11% Similarity=0.111 Sum_probs=38.5
Q ss_pred HHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCC-------hhHHHHHHHHHHhCCC
Q 047648 121 MLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGK-------FEDVEYVYKEMKRRRI 182 (537)
Q Consensus 121 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~ 182 (537)
.+|-.+.|+|.+++|.++....... .......+...+..+....+ -+....-|++..+...
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~ 183 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNST 183 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-T
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 4667789999999999999655543 34455666777777766432 2345566666655533
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=91.70 E-value=10 Score=34.53 Aligned_cols=235 Identities=13% Similarity=0.057 Sum_probs=144.9
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCH----HHHHHHHHHHHHcCCCCCHHHH
Q 047648 257 PNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKL----DEAVALRDEMMASGLKPNVVTS 332 (537)
Q Consensus 257 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~A~~~~~~~~~~~~~~~~~~~ 332 (537)
+|.......+..+...|.. .+...+..+... ++...-...+.++.+.|+. +++...+..+... .++..+-
T Consensus 35 ~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR 108 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQ-DVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVR 108 (280)
T ss_pred CCHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHH
Confidence 3555566666666666643 333333344332 3555555566666777653 4577777766433 4666666
Q ss_pred HHHHHHHHhcCCH-----HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047648 333 NALINGFCKKKLV-----EKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIA 407 (537)
Q Consensus 333 ~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 407 (537)
...+.+++..+.. ..+...+..... .++..+-...+.++.+.++ +.+...+-.+.+. +|..+-...+.
T Consensus 109 ~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~ 181 (280)
T PRK09687 109 ASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHH
Confidence 6666666655421 223333333322 2356666677777877776 4566776666653 35555566666
Q ss_pred HHHhcC-CHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcC
Q 047648 408 GLSREG-NVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKG 486 (537)
Q Consensus 408 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 486 (537)
++.+.+ ..+.+...+..+.. .++..+....+.++.+.|+ ..|+..+-+.++ .++ .....+.++...|
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~------~~~--~~~~a~~ALg~ig 249 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELK------KGT--VGDLIIEAAGELG 249 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHc------CCc--hHHHHHHHHHhcC
Confidence 666543 24466666666664 4677888888999999888 456666666653 123 3456778888888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHh
Q 047648 487 KLEDANGLLNELLEKGLIPNQTTYQIVREEMME 519 (537)
Q Consensus 487 ~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 519 (537)
.. +|+..+.++.+. .||.......+.+|.+
T Consensus 250 ~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 250 DK-TLLPVLDTLLYK--FDDNEIITKAIDKLKR 279 (280)
T ss_pred CH-hHHHHHHHHHhh--CCChhHHHHHHHHHhc
Confidence 86 689999998873 3688887777777653
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.60 E-value=9.7 Score=34.07 Aligned_cols=71 Identities=14% Similarity=0.123 Sum_probs=56.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHhH
Q 047648 436 TYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLE-----KGLIPNQTTY 510 (537)
Q Consensus 436 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~~ 510 (537)
.++.....|..+|.+.+|.++.++.+... +.+...|..++..++..|+--.|.+.++++.+ .|+..+...+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld----pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD----PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC----hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 34566778999999999999999998644 45788899999999999998888888888754 4776655443
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=91.59 E-value=2.1 Score=35.22 Aligned_cols=66 Identities=12% Similarity=0.033 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHH---HHHHhcCCHHHHHHHH-------HHHHHCCCCCC-hHHHHHHHHHHHhcC
Q 047648 380 MEDAFAMRNSMLDRGVLPDVSTYNCLI---AGLSREGNVEGVRNIM-------NELVNNGMRAG-LVTYNILVGALCKDG 448 (537)
Q Consensus 380 ~~~A~~~~~~~~~~~~~p~~~~~~~l~---~~~~~~~~~~~a~~~~-------~~~~~~~~~~~-~~~~~~l~~~~~~~g 448 (537)
++.|.+..+.-...++. |...++.-. .-+++.....++.+++ ++.+.. .|+ ..++..+..+|...+
T Consensus 7 FE~ark~aea~y~~nP~-DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPL-DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--NPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcH-hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHH
Confidence 45555555554444433 444333322 2233333333333333 333332 333 356666666666665
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.53 E-value=0.25 Score=27.98 Aligned_cols=31 Identities=16% Similarity=0.263 Sum_probs=18.9
Q ss_pred HHHHHCCCCCChHHHHHHHHHHHhcCChHHHH
Q 047648 423 NELVNNGMRAGLVTYNILVGALCKDGKSKKAV 454 (537)
Q Consensus 423 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 454 (537)
++.++.. |.+..+|+.+...|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3444443 455666777777777777766664
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=91.45 E-value=6.6 Score=31.82 Aligned_cols=57 Identities=5% Similarity=-0.140 Sum_probs=30.8
Q ss_pred HHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 047648 123 MLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRR 181 (537)
Q Consensus 123 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 181 (537)
...+.+.|++.+|+.+|+.+... .|.......|+..|....+-..-...-+++.+.+
T Consensus 51 ~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~~~~D~~Wr~~A~evle~~ 107 (160)
T PF09613_consen 51 GWLHIVRGDWDDALRLLRELEER--APGFPYAKALLALCLYALGDPSWRRYADEVLESG 107 (160)
T ss_pred HHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHHcCChHHHHHHHHHHhcC
Confidence 34467778888888888887654 3444444555555544333223333333444443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=91.21 E-value=0.65 Score=26.08 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047648 435 VTYNILVGALCKDGKSKKAVSLLDEMFKM 463 (537)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 463 (537)
.+|..+..+|...|++++|+..|++++++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 35666777777777777777777777654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=91.21 E-value=0.54 Score=27.88 Aligned_cols=29 Identities=28% Similarity=0.453 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047648 435 VTYNILVGALCKDGKSKKAVSLLDEMFKM 463 (537)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 463 (537)
.+++.+...|...|++++|..++++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 34555666666666666666666666543
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=91.15 E-value=13 Score=34.72 Aligned_cols=58 Identities=7% Similarity=-0.006 Sum_probs=26.6
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 047648 383 AFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVG 442 (537)
Q Consensus 383 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 442 (537)
-+.++++++++++. +...+..++..+.+..+.+...+-|+++.... +-+...|...++
T Consensus 50 klsilerAL~~np~-~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~ 107 (321)
T PF08424_consen 50 KLSILERALKHNPD-SERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLD 107 (321)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHH
Confidence 34444444444332 44444445555555555555555555555442 223444444443
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=90.91 E-value=17 Score=35.47 Aligned_cols=95 Identities=14% Similarity=0.159 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047648 258 NEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALIN 337 (537)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 337 (537)
|.....+++..+..+-.+.-+..+..+|..-| -+...|..++.+|..+ ..+.-..+++++.+..+ .|.+.-..+..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 44444455555555555555555555555432 2444455555555555 33444555555554321 12222233333
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 047648 338 GFCKKKLVEKARVLFDDISE 357 (537)
Q Consensus 338 ~~~~~~~~~~a~~~~~~~~~ 357 (537)
.|.+ ++...+...|.++..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~y 159 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALY 159 (711)
T ss_pred HHHH-hchhhHHHHHHHHHH
Confidence 3333 444555555544443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.78 E-value=8 Score=31.64 Aligned_cols=52 Identities=21% Similarity=0.176 Sum_probs=25.4
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047648 410 SREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMF 461 (537)
Q Consensus 410 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 461 (537)
...|.++......+.+...+.+.....-..|.-+-.+.|++..|.+.|..+.
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 3445555555544444433333333344445555555555555555555554
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.57 E-value=0.84 Score=25.51 Aligned_cols=28 Identities=14% Similarity=0.317 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047648 436 TYNILVGALCKDGKSKKAVSLLDEMFKM 463 (537)
Q Consensus 436 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 463 (537)
.+..+...+...|++++|++.|++++++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4556666777777777777777777654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=89.70 E-value=20 Score=34.54 Aligned_cols=126 Identities=12% Similarity=0.051 Sum_probs=84.0
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCh
Q 047648 301 INGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRM 380 (537)
Q Consensus 301 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 380 (537)
|.-....|+.-.|-+-+...... .+.++.........+...|+++.+...+....+. +.....+...+++...+.|++
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~-~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRN-QQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHh-CCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhH
Confidence 33344567766665544444433 1233333333444567788999988888776554 223455777888888889999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047648 381 EDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNG 429 (537)
Q Consensus 381 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 429 (537)
++|.....-|+...+. ++.......-..-..|-++++...|+++...+
T Consensus 374 ~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 374 REALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 9999999888877666 66655554444556778899999999888765
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=89.54 E-value=35 Score=37.09 Aligned_cols=102 Identities=13% Similarity=0.213 Sum_probs=54.6
Q ss_pred HhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHH
Q 047648 269 FCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVV--TSNALINGFCKKKLVE 346 (537)
Q Consensus 269 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~ 346 (537)
+...+.+++|.-.|+..-+. ...+.+|...|+|.+|+.+..++... .+.. +-..|+.-+...+++-
T Consensus 949 L~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~ 1016 (1265)
T KOG1920|consen 949 LREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHY 1016 (1265)
T ss_pred HHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccch
Confidence 33445556555555544321 23356666677777777766665421 1221 1245556666667776
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 047648 347 KARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSM 390 (537)
Q Consensus 347 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 390 (537)
+|-++..+.... ....+..|++...|++|.++....
T Consensus 1017 eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1017 EAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred hHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 666666555432 122344455666677776665443
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=89.41 E-value=22 Score=34.65 Aligned_cols=165 Identities=13% Similarity=0.125 Sum_probs=76.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047648 328 NVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIA 407 (537)
Q Consensus 328 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 407 (537)
|.....+++..++.+....-++.+-.+|...| -+-..|..++.+|... ..+.-..+|+++.+..+. |...-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44445555555555555555555555555543 1344455555555555 445555555555555433 3333334444
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-----hHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHH
Q 047648 408 GLSREGNVEGVRNIMNELVNNGMRAG-----LVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGF 482 (537)
Q Consensus 408 ~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 482 (537)
.|.+ ++.+.+..+|.++...-++.. ...|.-+...- ..+.+....+..++.. ..|...-...+.-+-.-|
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt--~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQT--KLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHH--hhccchHHHHHHHHHHHh
Confidence 4433 555555555555554321100 11222222111 2234444444444432 222222333444444455
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 047648 483 CQKGKLEDANGLLNELLEK 501 (537)
Q Consensus 483 ~~~g~~~~A~~~~~~~~~~ 501 (537)
....++++|+++++..++.
T Consensus 216 s~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 216 SENENWTEAIRILKHILEH 234 (711)
T ss_pred ccccCHHHHHHHHHHHhhh
Confidence 5555666666666655554
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.41 E-value=10 Score=30.76 Aligned_cols=51 Identities=14% Similarity=-0.064 Sum_probs=20.8
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 376 KEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVN 427 (537)
Q Consensus 376 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 427 (537)
+.++.+++..+++-+.-..+. ....-..-...+...|++.+|..+|+++.+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 344555555555544433222 111111122233444555555555555443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.25 E-value=13 Score=31.75 Aligned_cols=160 Identities=14% Similarity=0.079 Sum_probs=87.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCC-CCCHHHHH
Q 047648 185 NLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGI-LPNEVTFN 263 (537)
Q Consensus 185 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~~ 263 (537)
-+.+||.+.-.+...|+++.|.+.|+...+.+..-+-...|.-|..|.- |++.-|.+-+.+.-+.+. .|-...|.
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~----gR~~LAq~d~~~fYQ~D~~DPfR~LWL 173 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG----GRYKLAQDDLLAFYQDDPNDPFRSLWL 173 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeec----CchHhhHHHHHHHHhcCCCChHHHHHH
Confidence 4567888888888999999999999998887544444445555555543 888888777766655432 22233333
Q ss_pred HHHHHHhccCCHHHHHHHH-HHHHhCCCCCChhhHHHHHHHHH-hCCCHHHHHHHHHHHHHcCC------CCCHHHHHHH
Q 047648 264 TLIDGFCKDENISAAMKVF-EEMGSHGIAAGVVTYNSLINGLC-VDGKLDEAVALRDEMMASGL------KPNVVTSNAL 335 (537)
Q Consensus 264 ~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~l 335 (537)
.+.. ..-++.+|..-+ ++.... |..-|...|-.+. ..=..+ .+++.+....- ..-+.||--+
T Consensus 174 Yl~E---~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~e---~l~~~~~a~a~~n~~~Ae~LTEtyFYL 243 (297)
T COG4785 174 YLNE---QKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISEE---TLMERLKADATDNTSLAEHLTETYFYL 243 (297)
T ss_pred HHHH---hhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccHH---HHHHHHHhhccchHHHHHHHHHHHHHH
Confidence 3332 233555555433 333332 3333433332222 111111 12222222110 0113456666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 047648 336 INGFCKKKLVEKARVLFDDISEQ 358 (537)
Q Consensus 336 l~~~~~~~~~~~a~~~~~~~~~~ 358 (537)
...+...|+.++|..+|+-....
T Consensus 244 ~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 244 GKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHhccccHHHHHHHHHHHHHH
Confidence 67777777777777777766553
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.24 E-value=11 Score=31.81 Aligned_cols=90 Identities=14% Similarity=0.063 Sum_probs=52.9
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 047648 372 DAYCKEGRMEDAFAMRNSMLDRGVLPD----VSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKD 447 (537)
Q Consensus 372 ~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 447 (537)
.-+...|++++|..-|...++.-+... ...|..-..++.+.+.++.|+.-..+.++.+ +........-..+|-+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhh
Confidence 345667777777777777776522211 1233344445666777777777777666654 22223333334566666
Q ss_pred CChHHHHHHHHHHHH
Q 047648 448 GKSKKAVSLLDEMFK 462 (537)
Q Consensus 448 g~~~~A~~~~~~~~~ 462 (537)
..+++|++-|+++.+
T Consensus 182 ek~eealeDyKki~E 196 (271)
T KOG4234|consen 182 EKYEEALEDYKKILE 196 (271)
T ss_pred hhHHHHHHHHHHHHH
Confidence 777777777777765
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=89.23 E-value=0.75 Score=25.77 Aligned_cols=26 Identities=35% Similarity=0.355 Sum_probs=13.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 475 YNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
|..+...|...|++++|...|++.++
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44445555555555555555555544
|
... |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.36 E-value=6 Score=35.70 Aligned_cols=103 Identities=19% Similarity=0.220 Sum_probs=64.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCC
Q 047648 181 RIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLG---VSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILP 257 (537)
Q Consensus 181 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p 257 (537)
|.+....+...++..-....+++.+..++-++.... ..|+. +-.+.++.+.+ -+.++++.++..=.+-|+.|
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk----y~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK----YDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc----cChHHHHHHHhCcchhcccc
Confidence 334344455555555555667777777766665431 11222 22334444444 45557777777777778888
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 047648 258 NEVTFNTLIDGFCKDENISAAMKVFEEMGSH 288 (537)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 288 (537)
|-.+++.+|+.+.+.+++.+|.++.-.|...
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888888888887776665543
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.32 E-value=32 Score=35.08 Aligned_cols=79 Identities=13% Similarity=-0.001 Sum_probs=36.4
Q ss_pred chHHHHHHHHHhhCCCCCChhhHHHHHHH-----HHhCCChhHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHhc
Q 047648 132 PHLGFEAFKRAGDYGLKSSVLSCNQLLRA-----LVKEGKFEDVEYVYKEMKR-------RRIELNLDSFNFVLNGLCKA 199 (537)
Q Consensus 132 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 199 (537)
...|+++++...+.| +...-..+... ....++.+.|...|....+ .+ +......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 345666666666554 22222122211 2234556666666666554 32 222334444444442
Q ss_pred C-----ChhHHHHHHHHHHhCC
Q 047648 200 G-----KLNKASDIMEDMKSLG 216 (537)
Q Consensus 200 g-----~~~~a~~~~~~~~~~~ 216 (537)
. +.+.|..++.+..+.|
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g 323 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG 323 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC
Confidence 2 3444555555555544
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=87.90 E-value=1.5 Score=25.82 Aligned_cols=29 Identities=34% Similarity=0.486 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 472 IVTYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
..+++.+...|...|++++|..++++.++
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35788999999999999999999999876
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.47 E-value=12 Score=37.23 Aligned_cols=126 Identities=15% Similarity=0.150 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHhcCCchHHHHH-------HHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHH
Q 047648 63 LLLTGRLLHSLVVAKKYPKIRSF-------LHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLG 135 (537)
Q Consensus 63 ~~~~~~l~~~~~~~~~~~~a~~l-------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 135 (537)
....+.+++-+.++|..++|..+ ++..++.|..+-|.++.. + ..+..-|..|..+....|++..|
T Consensus 614 k~~rt~va~Fle~~g~~e~AL~~s~D~d~rFelal~lgrl~iA~~la~---e-----~~s~~Kw~~Lg~~al~~~~l~lA 685 (794)
T KOG0276|consen 614 KEIRTKVAHFLESQGMKEQALELSTDPDQRFELALKLGRLDIAFDLAV---E-----ANSEVKWRQLGDAALSAGELPLA 685 (794)
T ss_pred hhhhhhHHhHhhhccchHhhhhcCCChhhhhhhhhhcCcHHHHHHHHH---h-----hcchHHHHHHHHHHhhcccchhH
Confidence 34567788888888888888765 333344444333333221 1 22335566666666666666666
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 047648 136 FEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMED 211 (537)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 211 (537)
.+.|.+..+ |..|+-.+...|+.+....+-....+.|.. |....+|...|+++++.+++.+
T Consensus 686 ~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 686 SECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 666665543 224444455555555444444444444321 2223344556666666666544
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=87.01 E-value=1.2 Score=26.96 Aligned_cols=25 Identities=40% Similarity=0.745 Sum_probs=15.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC
Q 047648 478 LIKGFCQKGKLEDANGLLNELLEKG 502 (537)
Q Consensus 478 l~~~~~~~g~~~~A~~~~~~~~~~g 502 (537)
+..+|...|+.+.|.+++++.+..|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4556666666666666666666533
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=86.98 E-value=2 Score=24.00 Aligned_cols=30 Identities=13% Similarity=0.221 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHch
Q 047648 435 VTYNILVGALCKDGKSKKAVSLLDEMFKME 464 (537)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 464 (537)
.+|..+...|...|++++|.+.|++.+++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 356677778888888888888888887654
|
... |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=86.96 E-value=5 Score=36.57 Aligned_cols=90 Identities=10% Similarity=0.041 Sum_probs=52.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCh
Q 047648 371 IDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKS 450 (537)
Q Consensus 371 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 450 (537)
..-|.+.|.+++|++.+.+.....+. +++++..-..+|.+...+..|..-....+..+ ..-...|..-+.+-...|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 55677777777777777776654332 66666666677777777776666666555432 11223333334444444555
Q ss_pred HHHHHHHHHHHH
Q 047648 451 KKAVSLLDEMFK 462 (537)
Q Consensus 451 ~~A~~~~~~~~~ 462 (537)
.+|.+-++.+++
T Consensus 182 ~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 182 MEAKKDCETVLA 193 (536)
T ss_pred HHHHHhHHHHHh
Confidence 555555555554
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=86.64 E-value=18 Score=30.40 Aligned_cols=91 Identities=14% Similarity=0.007 Sum_probs=64.8
Q ss_pred HHHHHHHHcCCchHHHHHHHHHhhCCCCCChh-----hHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047648 121 MLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVL-----SCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNG 195 (537)
Q Consensus 121 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 195 (537)
.+...+...|++++|..-++..... |... +-..|.+.....|.+++|+..++.....+.. ......-...
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDi 168 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDI 168 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhH
Confidence 4567888899999999999888753 2222 2234556777888999999888877665432 2223445667
Q ss_pred HHhcCChhHHHHHHHHHHhCC
Q 047648 196 LCKAGKLNKASDIMEDMKSLG 216 (537)
Q Consensus 196 ~~~~g~~~~a~~~~~~~~~~~ 216 (537)
+...|+-++|..-|++..+.+
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 169 LLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHcCchHHHHHHHHHHHHcc
Confidence 888888889988888888764
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=85.87 E-value=9.9 Score=32.15 Aligned_cols=72 Identities=13% Similarity=0.008 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHH
Q 047648 346 EKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDR---GVLPDVSTYNCLIAGLSREGNVEGV 418 (537)
Q Consensus 346 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a 418 (537)
+.|.+.|-.+...+.--++.....|+..|. ..+.+++..++.+.++. +-.+|+..+.+|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 344444444444433334444444443333 34555555555554432 2234555555555555555555544
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.85 E-value=11 Score=34.15 Aligned_cols=99 Identities=17% Similarity=0.175 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC---CCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 047648 258 NEVTFNTLIDGFCKDENISAAMKVFEEMGSHG---IAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNA 334 (537)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 334 (537)
...+...++..-....+++.++..+-++.... ..++... .++++. +..-++++++.++..=++-|+-||.++++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irl-llky~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHH-HHccChHHHHHHHhCcchhccccchhhHHH
Confidence 33444444444444555666666655554321 1111111 112221 222345566666655555566666666666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 335 LINGFCKKKLVEKARVLFDDISEQ 358 (537)
Q Consensus 335 ll~~~~~~~~~~~a~~~~~~~~~~ 358 (537)
+++.+.+.+++..|..+...|..+
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHH
Confidence 666666666666666655555443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=85.82 E-value=32 Score=32.52 Aligned_cols=54 Identities=13% Similarity=0.199 Sum_probs=33.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 047648 192 VLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVE 252 (537)
Q Consensus 192 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~ 252 (537)
...+.-+.|+++...+........ .++...+..+... + .++.+++...++....
T Consensus 4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~~l--~---~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALLAL--R---QGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHHHH--h---CccHHHHHHHHHHHHH
Confidence 355677889998866665555432 2344555555544 4 6888888877777654
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=85.68 E-value=85 Score=37.27 Aligned_cols=321 Identities=10% Similarity=-0.005 Sum_probs=161.9
Q ss_pred HHHHHHHHcCCchHHHHHHHHHhhCCCC--CChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047648 121 MLMLAYVKNMKPHLGFEAFKRAGDYGLK--SSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCK 198 (537)
Q Consensus 121 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 198 (537)
.+..+-.+++.+.+|+..++.-.....+ .....|-.+...|...++++....+...-.. +...+. -|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~-qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQ-QILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHH-HHHHHHh
Confidence 5667888899999999999984221111 1122344444489999999998888774221 222333 3445667
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhccCCHHH
Q 047648 199 AGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTL-IDGFCKDENISA 277 (537)
Q Consensus 199 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l-~~~~~~~g~~~~ 277 (537)
.|+++.|...|+++.+.+ ++...+++-++..... .+.+...+-..+-...+ ..+....++.+ ..+--+.++++.
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~---~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~ 1536 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLA---IQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDL 1536 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhc---ccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhh
Confidence 899999999999999875 2236667766666555 57777666554444332 22233333332 344456777777
Q ss_pred HHHHHHHHHhCCCCCChhhHHHH--HHHHHhCC--CHHHHHHHHHHHHHcCCCC---------CHHHHHHHHHHHHhcCC
Q 047648 278 AMKVFEEMGSHGIAAGVVTYNSL--INGLCVDG--KLDEAVALRDEMMASGLKP---------NVVTSNALINGFCKKKL 344 (537)
Q Consensus 278 a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~--~~~~A~~~~~~~~~~~~~~---------~~~~~~~ll~~~~~~~~ 344 (537)
...... .. +..+|... .....+.. +.-.-.+..+.+.+.-+.| -...|..++....-..-
T Consensus 1537 ~e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el 1609 (2382)
T KOG0890|consen 1537 LESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLEL 1609 (2382)
T ss_pred hhhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 666655 21 23333332 22222221 1111112222222211111 01223333333222111
Q ss_pred HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHH-HHhCCCCC-----CHHHHHHHHHHHHhcCCHHHH
Q 047648 345 VEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNS-MLDRGVLP-----DVSTYNCLIAGLSREGNVEGV 418 (537)
Q Consensus 345 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~p-----~~~~~~~l~~~~~~~~~~~~a 418 (537)
......++..-......-+..-|..-+..-....+..+-+--+++ +......| -..+|....+...++|.++.|
T Consensus 1610 ~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A 1689 (2382)
T KOG0890|consen 1610 ENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRA 1689 (2382)
T ss_pred HHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHH
Confidence 111111000000000000111222222211111111111111111 11111111 245777788888888888888
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 419 RNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
...+-...+.+ . +..+.-........|+...|+.++++.++
T Consensus 1690 ~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~ 1730 (2382)
T KOG0890|consen 1690 QNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILS 1730 (2382)
T ss_pred HHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 88777776654 2 34556666778888888888888888875
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=85.48 E-value=7.2 Score=28.63 Aligned_cols=47 Identities=9% Similarity=0.162 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047648 382 DAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNN 428 (537)
Q Consensus 382 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 428 (537)
+..+-++.+....+.|++.+..+.+++|.+.+++..|.++++-++..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33444444445555555655566666666666666666665555543
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=85.24 E-value=0.52 Score=37.90 Aligned_cols=53 Identities=13% Similarity=0.174 Sum_probs=26.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 047648 336 INGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRN 388 (537)
Q Consensus 336 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 388 (537)
+..+.+.+.++....+++.+...+...+....+.++..|++.++.+...++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 34444455555555555555544333345555555555555555455544444
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.15 E-value=8.4 Score=32.87 Aligned_cols=77 Identities=17% Similarity=0.189 Sum_probs=58.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCChHHHHHHHHH
Q 047648 366 TYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNG--MRAGLVTYNILVGA 443 (537)
Q Consensus 366 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~ 443 (537)
+.+..++.+.+.+...+|+...++-++.++. |...-..+++.++-.|++++|..-++-.-... ..+....|..++.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4456677888899999999999888887655 77788889999999999999988777665542 23345667766655
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=85.11 E-value=9.2 Score=27.78 Aligned_cols=44 Identities=9% Similarity=0.140 Sum_probs=20.9
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047648 383 AFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELV 426 (537)
Q Consensus 383 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 426 (537)
+.+-++.+......|++.+..+.+++|.+.+++..|.++++-.+
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33334444444444455555555555555555555555554444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=85.10 E-value=6.4 Score=28.78 Aligned_cols=73 Identities=15% Similarity=0.128 Sum_probs=42.2
Q ss_pred HhcCChHHHHHHHHHHHHchhcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHhHHHHHHHH
Q 047648 445 CKDGKSKKAVSLLDEMFKMEKEKKWPN-----IVTYNVLIKGFCQKGKLEDANGLLNELLEKG-LIPNQTTYQIVREEM 517 (537)
Q Consensus 445 ~~~g~~~~A~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g-~~p~~~~~~~l~~~~ 517 (537)
.+.|++..|.+.+.+..+.......+. ....-.+.......|++++|...+++.++.- -.-|..+....+..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~ 87 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWL 87 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 456777777777766665443333333 2233334555677888999888888887531 112455555444433
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.83 E-value=52 Score=34.07 Aligned_cols=141 Identities=9% Similarity=0.055 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047648 117 IIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGL 196 (537)
Q Consensus 117 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 196 (537)
..+...|..+...|++++|-...-.|.. .+..-|..-+..+...++...... -+..-....+...|..++..+
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~l~~Ia~---~lPt~~~rL~p~vYemvLve~ 465 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELDQLTDIAP---YLPTGPPRLKPLVYEMVLVEF 465 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccccccchhhc---cCCCCCcccCchHHHHHHHHH
Confidence 5666788889999999999988888874 366677777777777666544333 233333335677788888777
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 047648 197 CKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENIS 276 (537)
Q Consensus 197 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 276 (537)
.. .+. ...++...+. +...|..+.-.-+. ..++ .++ .. +...-..|+..|...+++.
T Consensus 466 L~-~~~---~~F~e~i~~W----p~~Lys~l~iisa~---~~q~----------~q~-Se-~~~L~e~La~LYl~d~~Y~ 522 (846)
T KOG2066|consen 466 LA-SDV---KGFLELIKEW----PGHLYSVLTIISAT---EPQI----------KQN-SE-STALLEVLAHLYLYDNKYE 522 (846)
T ss_pred HH-HHH---HHHHHHHHhC----ChhhhhhhHHHhhc---chHH----------Hhh-cc-chhHHHHHHHHHHHccChH
Confidence 66 222 2222222221 22222222111111 1111 111 11 1122233778888888888
Q ss_pred HHHHHHHHHHh
Q 047648 277 AAMKVFEEMGS 287 (537)
Q Consensus 277 ~a~~~~~~~~~ 287 (537)
.|..++-..++
T Consensus 523 ~Al~~ylklk~ 533 (846)
T KOG2066|consen 523 KALPIYLKLQD 533 (846)
T ss_pred HHHHHHHhccC
Confidence 88888776654
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=84.49 E-value=8.3 Score=28.01 Aligned_cols=44 Identities=16% Similarity=0.148 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 047648 417 GVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEM 460 (537)
Q Consensus 417 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 460 (537)
++.+-++.+...++-|++.+..+.+.+|.+.+++..|+++|+.+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~v 68 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAI 68 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34444444444455555555555555555555555555555544
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.31 E-value=24 Score=29.80 Aligned_cols=88 Identities=18% Similarity=0.140 Sum_probs=44.8
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC
Q 047648 304 LCVDGKLDEAVALRDEMMASGLKPN-----VVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEG 378 (537)
Q Consensus 304 ~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 378 (537)
+...|++++|..-|...+..- ++. ...|..-..++.+.+.++.|+.--.+..+.++. .......-..+|.+..
T Consensus 105 ~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKME 182 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhh
Confidence 445566666666666555531 211 223344444555566666666655555554322 1122222234555666
Q ss_pred ChHHHHHHHHHHHhC
Q 047648 379 RMEDAFAMRNSMLDR 393 (537)
Q Consensus 379 ~~~~A~~~~~~~~~~ 393 (537)
++++|+.-|..+.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 666666666666654
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=83.92 E-value=19 Score=35.77 Aligned_cols=131 Identities=19% Similarity=0.140 Sum_probs=84.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh
Q 047648 297 YNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCK 376 (537)
Q Consensus 297 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 376 (537)
-+.+..-+..+|-.++|+++- +|+.. -.+...+.|+++.|..+..+.. +..-|..|.++..+
T Consensus 617 rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~ 678 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALS 678 (794)
T ss_pred hhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhh
Confidence 344555566666666665442 22211 1234556788888877665532 56678888888888
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHH
Q 047648 377 EGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSL 456 (537)
Q Consensus 377 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 456 (537)
.+++..|.+.|.+..+ |..|+-.+...|+-+....+-....+.| + .|...-+|...|+++++.++
T Consensus 679 ~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g-~-----~N~AF~~~~l~g~~~~C~~l 743 (794)
T KOG0276|consen 679 AGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG-K-----NNLAFLAYFLSGDYEECLEL 743 (794)
T ss_pred cccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc-c-----cchHHHHHHHcCCHHHHHHH
Confidence 8888888888877654 3456666677777766666666655555 2 23344567788888888888
Q ss_pred HHHH
Q 047648 457 LDEM 460 (537)
Q Consensus 457 ~~~~ 460 (537)
+.+-
T Consensus 744 Li~t 747 (794)
T KOG0276|consen 744 LIST 747 (794)
T ss_pred HHhc
Confidence 7654
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=83.39 E-value=1.7 Score=23.97 Aligned_cols=24 Identities=17% Similarity=0.394 Sum_probs=14.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 477 VLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
.+..++.+.|++++|.+.|+++++
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH
Confidence 344555556666666666666655
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=83.13 E-value=4 Score=37.16 Aligned_cols=93 Identities=15% Similarity=0.073 Sum_probs=69.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 047648 336 INGFCKKKLVEKARVLFDDISEQGLSP-SVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGN 414 (537)
Q Consensus 336 l~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 414 (537)
.+-|.+.|.+++|+..|...... .| +++++..-..+|.+..++..|..-....+..+-. -...|..-+.+-...|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHHhh
Confidence 35688999999999999987765 34 8888888899999999999888877776654211 23456666666666777
Q ss_pred HHHHHHHHHHHHHCCCCCC
Q 047648 415 VEGVRNIMNELVNNGMRAG 433 (537)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~ 433 (537)
..+|.+-++..++. .|+
T Consensus 181 ~~EAKkD~E~vL~L--EP~ 197 (536)
T KOG4648|consen 181 NMEAKKDCETVLAL--EPK 197 (536)
T ss_pred HHHHHHhHHHHHhh--Ccc
Confidence 88888888877775 455
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=82.53 E-value=11 Score=27.80 Aligned_cols=43 Identities=16% Similarity=0.125 Sum_probs=17.7
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHH
Q 047648 136 FEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMK 178 (537)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 178 (537)
.+-++.+......|++....+.+++|.+.+++..|.++++.++
T Consensus 30 rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 30 RRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333344333444444444444444444444444444444443
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.50 E-value=37 Score=30.61 Aligned_cols=59 Identities=17% Similarity=0.238 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047648 367 YNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELV 426 (537)
Q Consensus 367 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 426 (537)
++.....|..+|.+.+|..+.++.+..++- +...+..+++.++..|+--.+.+-++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL-~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPL-SEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 334445555566666666665555554322 44555555556666665555555544443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=82.15 E-value=24 Score=28.22 Aligned_cols=53 Identities=19% Similarity=0.019 Sum_probs=30.7
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047648 376 KEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNG 429 (537)
Q Consensus 376 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 429 (537)
..++++++..+++.|.-..+. ....-..-...+...|++++|.++|+++.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 466777777777777654332 12222222334566777777777777776653
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=82.15 E-value=9.5 Score=24.28 Aligned_cols=37 Identities=30% Similarity=0.438 Sum_probs=22.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 047648 477 VLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVRE 515 (537)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 515 (537)
.+.-++.+.|++++|.+..+.+++ +.|+..-...+..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHH
Confidence 344566777777777777777777 5566655444433
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=82.13 E-value=2.3 Score=22.16 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=11.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 047648 476 NVLIKGFCQKGKLEDANGLLN 496 (537)
Q Consensus 476 ~~l~~~~~~~g~~~~A~~~~~ 496 (537)
..+..++...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 344555556666666655544
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=81.07 E-value=48 Score=30.98 Aligned_cols=117 Identities=14% Similarity=0.110 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHH
Q 047648 346 EKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSR---EGNVEGVRNIM 422 (537)
Q Consensus 346 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~ 422 (537)
+.-+.++++..+.++ .+...+..++..+.+..+.+...+.|++++...+. +...|...+..... .-.++....+|
T Consensus 48 E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 444556666655543 25556666666666666666667777777766443 56666666655443 22345555555
Q ss_pred HHHHHC------CC------CCC-----hHHHHHHHHHHHhcCChHHHHHHHHHHHHch
Q 047648 423 NELVNN------GM------RAG-----LVTYNILVGALCKDGKSKKAVSLLDEMFKME 464 (537)
Q Consensus 423 ~~~~~~------~~------~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 464 (537)
.+.++. +. .++ ..++..+...+..+|..+.|..+++.++++.
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 444321 10 001 1233444455677888999999998888754
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=81.04 E-value=42 Score=30.31 Aligned_cols=137 Identities=13% Similarity=0.053 Sum_probs=74.7
Q ss_pred CchHHHHHHHHHhh-CCCCCChhhHHHHHHHHHh-CC-ChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCChhHHH
Q 047648 131 KPHLGFEAFKRAGD-YGLKSSVLSCNQLLRALVK-EG-KFEDVEYVYKEMKR-RRIELNLDSFNFVLNGLCKAGKLNKAS 206 (537)
Q Consensus 131 ~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~ 206 (537)
...+|+.+|+.... ..+-.|..+...+++.... .+ ....-.++.+-+.. .+-.++..+...++..+++.+++..-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34455555553221 1233455555555655554 22 12222333333332 234556666677777777777777777
Q ss_pred HHHHHHHhC-CCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHHHh
Q 047648 207 DIMEDMKSL-GVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKD-----MVENGILPNEVTFNTLIDGFC 270 (537)
Q Consensus 207 ~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~-----~~~~~~~p~~~~~~~l~~~~~ 270 (537)
++++..... +...|...|..+|..... .|+..-..+++.+ +.+.|+..+...-.++-..+.
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~---sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVE---SGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHH---cCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence 777766554 445567777777777777 6666666665554 345555555555555444443
|
|
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=80.73 E-value=35 Score=30.14 Aligned_cols=52 Identities=15% Similarity=0.122 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHchhcCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHHc
Q 047648 450 SKKAVSLLDEMFKMEKEKKWPNIVTYNVLIK-----GFCQKGKLEDANGLLNELLEK 501 (537)
Q Consensus 450 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~~ 501 (537)
.+.|.+.|+++.++.....+|...++-.++- .|-..|+.++|.++.++..+.
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 4678888888877655545665444433332 234589999999888776653
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=80.51 E-value=34 Score=28.85 Aligned_cols=130 Identities=13% Similarity=0.110 Sum_probs=74.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hHHHHHHH
Q 047648 366 TYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNC--LIAGLSREGNVEGVRNIMNELVNNGMRAG--LVTYNILV 441 (537)
Q Consensus 366 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~ 441 (537)
.|..++.... .+.+ +.....+.+...+......++.. +...+...+++++|..-++.........+ ..+--.|.
T Consensus 56 ~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLA 133 (207)
T COG2976 56 QYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLA 133 (207)
T ss_pred HHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHH
Confidence 3444444433 2333 44444555555432222223322 33456778888888888887765311111 12223455
Q ss_pred HHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047648 442 GALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKG 502 (537)
Q Consensus 442 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 502 (537)
......|.+++|+..++...+ . .-.......-...+...|+-++|..-|++.++.+
T Consensus 134 rvq~q~~k~D~AL~~L~t~~~---~--~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 134 RVQLQQKKADAALKTLDTIKE---E--SWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHhhhHHHHHHHHhcccc---c--cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 667788888888888876642 0 0122334455577888888888888888888865
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=80.35 E-value=32 Score=28.55 Aligned_cols=67 Identities=10% Similarity=0.080 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHcCCCCCHhHHHH---HHHHHHhcCChHHHHHHHHHHHhC-----CCCCC-HHHHHHHHHHHHhc
Q 047648 345 VEKARVLFDDISEQGLSPSVITYNT---LIDAYCKEGRMEDAFAMRNSMLDR-----GVLPD-VSTYNCLIAGLSRE 412 (537)
Q Consensus 345 ~~~a~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~ 412 (537)
++.|.+..+.....++. |...++. .+.-+.+..+..++.+++++.+.+ .+.|+ ..++..+..+|...
T Consensus 7 FE~ark~aea~y~~nP~-DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~ 82 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPL-DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSL 82 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcH-hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 55666666665554433 4444333 333344444444454444444322 13344 45777777777544
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=80.05 E-value=0.68 Score=37.21 Aligned_cols=84 Identities=15% Similarity=0.101 Sum_probs=50.7
Q ss_pred HHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 047648 122 LMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGK 201 (537)
Q Consensus 122 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 201 (537)
++..+.+.+.+..+..+++.+...+...+....+.++..|++.++.+...++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 55666667777777777777776554556677777777777777667666666511 11222345555666666
Q ss_pred hhHHHHHHHHH
Q 047648 202 LNKASDIMEDM 212 (537)
Q Consensus 202 ~~~a~~~~~~~ 212 (537)
++++.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 66666655543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 89.5 bits (220), Expect = 9e-19
Identities = 18/224 (8%), Positives = 62/224 (27%), Gaps = 1/224 (0%)
Query: 171 EYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDG 230
+ ++ + +L L+ +S +
Sbjct: 77 GCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKC 136
Query: 231 YCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGI 290
+ + V + L +N ++ G+ + + V + G+
Sbjct: 137 CLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGL 196
Query: 291 AAGVVTYNSLINGLCVDGKLDEAVA-LRDEMMASGLKPNVVTSNALINGFCKKKLVEKAR 349
+++Y + + + + + ++M GLK + + L++ + +++
Sbjct: 197 TPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVH 256
Query: 350 VLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDR 393
+ S P + + L+ + + +
Sbjct: 257 KVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTL 300
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 87.2 bits (214), Expect = 4e-18
Identities = 25/203 (12%), Positives = 65/203 (32%), Gaps = 5/203 (2%)
Query: 311 DEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTL 370
A L D + P L+ K ++ + S+ LS
Sbjct: 74 QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAF 133
Query: 371 IDAYCKEGRMEDAFAM---RNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVN 427
++ A + + + L + YN ++ G +R+G + + ++ + +
Sbjct: 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193
Query: 428 NGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGK 487
G+ L++Y + + + + + + +M +E + VL+ +
Sbjct: 194 AGLTPDLLSYAAALQCMGRQDQDAGTIERC--LEQMSQEGLKLQALFTAVLLSEEDRATV 251
Query: 488 LEDANGLLNELLEKGLIPNQTTY 510
L+ + + +P
Sbjct: 252 LKAVHKVKPTFSLPPQLPPPVNT 274
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 86.0 bits (211), Expect = 1e-17
Identities = 27/216 (12%), Positives = 65/216 (30%), Gaps = 10/216 (4%)
Query: 309 KLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFD---DISEQGLSPSVI 365
LD A + + L A + A L ++ ++
Sbjct: 107 SLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLD 166
Query: 366 TYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGN-VEGVRNIMNE 424
YN ++ + ++G ++ + + D G+ PD+ +Y + + R+ + + +
Sbjct: 167 MYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQ 226
Query: 425 LVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQ 484
+ G++ + +L+ + K + + P V + L++
Sbjct: 227 MSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPT---FSLPPQLPPPVNTSKLLRDVYA 283
Query: 485 KGKLEDANGLLNELLEKGLIPNQTTYQIVREEMMEK 520
K L L Q+ E
Sbjct: 284 KDGRVSYPKLHLPLKTL---QCLFEKQLHMELASRV 316
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 83.7 bits (205), Expect = 6e-17
Identities = 23/179 (12%), Positives = 62/179 (34%), Gaps = 8/179 (4%)
Query: 127 VKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYV---YKEMKRRRIE 183
+ +A G + +L+ + + + ++ + +++R
Sbjct: 106 LSLDVEQAPSGQHSQAQLSGQQQRLLA---FFKCCLLTDQLPLAHHLLVVHHGQRQKRKL 162
Query: 184 LNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKA 243
L LD +N V+ G + G + ++ +K G++P +++Y + ++
Sbjct: 163 LTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGT--I 220
Query: 244 DAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLIN 302
+ + M + G+ + L+ + + A KV V + L+
Sbjct: 221 ERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLR 279
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 67.9 bits (164), Expect = 5e-12
Identities = 17/140 (12%), Positives = 46/140 (32%)
Query: 382 DAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILV 441
A + + P L+ + +++ + + +
Sbjct: 75 MAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFF 134
Query: 442 GALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEK 501
+ A LL +++K + YN ++ G+ ++G ++ +L + +
Sbjct: 135 KCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA 194
Query: 502 GLIPNQTTYQIVREEMMEKG 521
GL P+ +Y + M +
Sbjct: 195 GLTPDLLSYAAALQCMGRQD 214
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.0 bits (147), Expect = 7e-10
Identities = 84/595 (14%), Positives = 166/595 (27%), Gaps = 190/595 (31%)
Query: 78 KYPKIRS-FLHMFVKNGKFTSVS----TIF------HALSTCSDSLCRNSIIIDMLMLAY 126
+Y I S F FV N V +I H + + D++ + L+
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS-KDAVSGTLRLFWTLLS-- 73
Query: 127 VKNMKPHLGFEAFKRAG---DYG-LKSSV-LSCNQ--LLRALVKEGK---FEDVEYVYKE 176
K + F +Y L S + Q ++ + E + + D + V+ +
Sbjct: 74 ----KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ-VFAK 128
Query: 177 MKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGG 236
R++ L KL +A + L + V+ IDG G
Sbjct: 129 YNVSRLQPYL--------------KLRQA------LLELRPAKNVL-----IDG---VLG 160
Query: 237 IGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKD--------ENISAAMKVFEEMGSH 288
GK + A V + ++ + L C + + + S
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNL--KNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 289 GIAAGVVTYNSLI-------------NGLCV-----DGKLDEAVAL--------RDEMMA 322
+ + +S+ N L V + K A L R + +
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278
Query: 323 SGLKPNV---VTSNALINGFCKKKLVEK-ARVLFDDISEQGLSPSVITYN----TLIDAY 374
L ++ + ++ + L D Q L V+T N ++I
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL--DCRPQDLPREVLTTNPRRLSIIAES 336
Query: 375 CKEG-------------RMEDAFA----------MRNSMLDRGVLPDVSTYNCLI--AGL 409
++G ++ R V P + I L
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP----SAHIPTILL 392
Query: 410 SR---EGNVEGVRNIMNELVNNG-----------------------------MRAGLVT- 436
S + V ++N+L + +V
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Query: 437 YNILVGALCKDGKSKKAVSLLDE---------MFKMEKEKKW---PNI-VTYNVLIKGFC 483
YNI D LD+ + +E ++ + + + L +
Sbjct: 453 YNIPK-TFDSDDLIPPY---LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508
Query: 484 QKGKLEDANGLLNELL------EKGLIPNQTTYQIVREEMMEKGFIPDIEGHMYN 532
+A+G + L + + N Y+ + +++ F+P IE ++
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD--FLPKIEENLIC 561
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 537 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.9 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.9 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.88 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.87 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.87 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.87 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.86 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.85 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.84 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.83 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.83 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.81 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.81 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.81 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.8 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.8 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.8 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.78 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.78 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.77 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.73 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.72 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.71 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.71 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.69 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.69 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.68 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.68 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.67 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.66 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.66 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.66 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.66 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.65 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.64 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.64 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.64 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.63 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.62 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.61 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.61 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.6 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.6 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.59 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.57 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.56 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.55 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.54 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.53 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.52 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.52 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.51 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.51 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.49 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.49 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.49 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.46 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.46 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.44 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.43 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.42 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.41 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.4 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.39 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.38 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.38 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.36 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.36 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.36 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.33 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.28 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.26 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.24 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.2 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.19 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.18 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.16 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.15 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.14 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.1 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.1 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.09 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.08 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.07 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.07 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.06 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.05 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.05 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.04 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.03 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.03 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.01 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.01 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.0 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.98 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.97 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.96 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.96 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.95 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.95 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.93 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.92 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.91 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.89 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.89 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.85 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.82 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.82 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.81 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.8 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.8 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.79 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.78 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.78 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.76 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.74 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.74 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.72 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.71 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.7 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.7 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.69 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.69 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.68 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.68 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.67 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.67 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.67 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.67 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.66 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.64 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.62 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.62 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.61 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.61 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.6 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.57 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.56 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.56 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.55 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.55 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.54 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.54 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.54 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.53 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.51 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.5 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.5 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.47 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.46 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.45 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.45 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.4 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.39 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.38 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.38 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.37 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.36 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.36 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.36 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.33 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.33 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.33 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.33 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.23 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.2 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.2 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.19 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.18 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.18 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.17 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.16 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.15 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.15 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.14 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.12 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.1 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.07 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.07 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.04 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.04 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.01 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.97 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.89 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.88 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.86 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.79 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.74 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.73 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.71 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.7 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.69 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.65 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.61 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.49 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.4 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.33 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.22 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.16 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.09 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.07 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.07 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.0 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.99 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.99 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.9 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.69 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.31 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.1 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.05 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.05 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.91 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.68 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.67 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.39 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.21 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.93 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.91 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 94.77 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.47 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.99 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 93.9 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 93.2 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 93.17 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.09 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 92.85 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.46 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 91.95 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 91.18 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.37 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 89.95 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 89.7 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 89.47 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 89.23 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 89.15 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 87.6 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 87.41 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 87.19 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 87.01 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 86.17 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 85.4 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 83.88 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 83.86 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 83.41 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 83.39 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 80.55 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=325.98 Aligned_cols=438 Identities=11% Similarity=0.020 Sum_probs=376.8
Q ss_pred CCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHH
Q 047648 61 HSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFK 140 (537)
Q Consensus 61 ~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 140 (537)
++...+..++..+.+.|++++|..+++.+.+. .|+..++..++.+|.+.|++++|+.+|+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--------------------~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 141 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--------------------TGNPNDAFWLAQVYCCTGDYARAKCLLT 141 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------HCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--------------------CCCchHHHHHHHHHHHcCcHHHHHHHHH
Confidence 56778999999999999999999999888754 2455778889999999999999999999
Q ss_pred HHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHhcCChhHH
Q 047648 141 RAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRR---------------RIELNLDSFNFVLNGLCKAGKLNKA 205 (537)
Q Consensus 141 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~a 205 (537)
++... +++..+++.++.++.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++|
T Consensus 142 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 219 (597)
T 2xpi_A 142 KEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRA 219 (597)
T ss_dssp HTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHH
Confidence 98753 678999999999999999999999999853222 2234688999999999999999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHH--------------------------------------HHHHhcCCCCCCHHHHHHHH
Q 047648 206 SDIMEDMKSLGVSPKVVTYNIL--------------------------------------IDGYCKKGGIGKMYKADAVF 247 (537)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~l--------------------------------------l~~~~~~~~~~~~~~a~~~~ 247 (537)
.++|+++.+.+.. +...+..+ +..|.+ .|++++|.++|
T Consensus 220 ~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~A~~~~ 295 (597)
T 2xpi_A 220 KECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSH---EDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTT---HHHHHHHHHHH
T ss_pred HHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcC---cchHHHHHHHH
Confidence 9999999886422 33333333 334445 78899999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Q 047648 248 KDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKP 327 (537)
Q Consensus 248 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 327 (537)
+++.+. +++..+++.++..|.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|.++++++.+.. +.
T Consensus 296 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 371 (597)
T 2xpi_A 296 SSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PE 371 (597)
T ss_dssp HTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT
T ss_pred HHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cc
Confidence 998765 5789999999999999999999999999998765 3478899999999999999999999999998754 56
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047648 328 NVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIA 407 (537)
Q Consensus 328 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 407 (537)
+..++..++..|.+.|++++|..+|+++.+..+. +..+|+.++.+|.+.|++++|.++|+++.+.++. +..+|..++.
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 449 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGM 449 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHH
Confidence 7889999999999999999999999999886443 6889999999999999999999999999987654 7889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhc-CCCCC--HHHHHHHHHHHHh
Q 047648 408 GLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKE-KKWPN--IVTYNVLIKGFCQ 484 (537)
Q Consensus 408 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~--~~~~~~l~~~~~~ 484 (537)
+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+..+. +..|+ ..+|..++.+|.+
T Consensus 450 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 528 (597)
T 2xpi_A 450 QHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK 528 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence 9999999999999999999875 567899999999999999999999999999875432 44676 7899999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcCCcCCccCCCCc
Q 047648 485 KGKLEDANGLLNELLEKGLIPNQTTYQIVREEMMEKGFIPDIEGHMYN 532 (537)
Q Consensus 485 ~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~l~~ 532 (537)
.|++++|.++++++.+.+ +.+..+|..+...|.+.|++++|..++..
T Consensus 529 ~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 575 (597)
T 2xpi_A 529 LKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHE 575 (597)
T ss_dssp TTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999999999999865 23778999999999999999998776544
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=317.30 Aligned_cols=440 Identities=12% Similarity=0.027 Sum_probs=378.8
Q ss_pred cCCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHH
Q 047648 38 NSDADPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSI 117 (537)
Q Consensus 38 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 117 (537)
...++++.|+..|+.+... .|+..++..++.++.+.|++++|..+++.+... ++++.
T Consensus 95 ~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------------~~~~~ 151 (597)
T 2xpi_A 95 LMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--------------------NRSSA 151 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--------------------GTCHH
T ss_pred HHccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--------------------ccchh
Confidence 3456889999999999854 346688899999999999999999998866532 46678
Q ss_pred HHHHHHHHHHHcCCchHHHHHHHHHhhC---------------CCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 047648 118 IIDMLMLAYVKNMKPHLGFEAFKRAGDY---------------GLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRI 182 (537)
Q Consensus 118 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 182 (537)
+++.++.+|.+.|++++|+++|+++... +.+++..+|+.++.++.+.|++++|.++|+++.+.++
T Consensus 152 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 231 (597)
T 2xpi_A 152 CRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA 231 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999954322 2234688999999999999999999999999988753
Q ss_pred CCCHHHHHHH--------------------------------------HHHHHhcCChhHHHHHHHHHHhCCCCCChhhH
Q 047648 183 ELNLDSFNFV--------------------------------------LNGLCKAGKLNKASDIMEDMKSLGVSPKVVTY 224 (537)
Q Consensus 183 ~~~~~~~~~l--------------------------------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 224 (537)
. +...+..+ +..|.+.|++++|.++|+++.+. +++..++
T Consensus 232 ~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ 308 (597)
T 2xpi_A 232 K-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLL 308 (597)
T ss_dssp T-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHH
T ss_pred h-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHH
Confidence 3 34443333 45566789999999999999876 5799999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 047648 225 NILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGL 304 (537)
Q Consensus 225 ~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 304 (537)
+.++.+|.+ .|++++|.++|+++.+.+.. +..++..++.++.+.|++++|..+++++.+.. +.+..+|..++.+|
T Consensus 309 ~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 383 (597)
T 2xpi_A 309 LCKADTLFV---RSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYY 383 (597)
T ss_dssp HHHHHHHHH---TTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHH
T ss_pred HHHHHHHHH---hcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 999999999 99999999999999987533 77889999999999999999999999998653 45788999999999
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHH
Q 047648 305 CVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAF 384 (537)
Q Consensus 305 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 384 (537)
.+.|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|..+|+++.+.++. +..+|..++.+|.+.|++++|.
T Consensus 384 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 461 (597)
T 2xpi_A 384 LCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNILLAN 461 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999998864 456889999999999999999999999999887543 7889999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--hHHHHHHHHHHHhcCChHHHHHHHH
Q 047648 385 AMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNN----GMRAG--LVTYNILVGALCKDGKSKKAVSLLD 458 (537)
Q Consensus 385 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~ 458 (537)
++|+++.+..+. +..+|..++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.|+
T Consensus 462 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 540 (597)
T 2xpi_A 462 EYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540 (597)
T ss_dssp HHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999987554 8899999999999999999999999999876 55677 7899999999999999999999999
Q ss_pred HHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHH
Q 047648 459 EMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQ-TTYQIVREEM 517 (537)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~ 517 (537)
++++.. +.+..+|..++.+|.+.|++++|.+.++++++ +.|+. ..+..+...|
T Consensus 541 ~~~~~~----p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 541 QGLLLS----TNDANVHTAIALVYLHKKIPGLAITHLHESLA--ISPNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHTT
T ss_pred HHHHhC----CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHH
Confidence 998743 45889999999999999999999999999999 45654 4555544433
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-29 Score=239.45 Aligned_cols=382 Identities=13% Similarity=0.054 Sum_probs=326.7
Q ss_pred HHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 047648 122 LMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGK 201 (537)
Q Consensus 122 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 201 (537)
+...+.+.|++++|++.++.+.+.. |.+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 4567888999999999999998864 4466777888888999999999999999988764 4478899999999999999
Q ss_pred hhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 047648 202 LNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKV 281 (537)
Q Consensus 202 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 281 (537)
+++|.+.|+++.+.. +.+..+|..+..++.. .|++++|.+.++++.+.+. .+...+..+...+...|++++|.+.
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVA---AGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKAC 157 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH---HSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHH
Confidence 999999999998863 2245678899999999 8999999999999987642 2456777888889999999999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 047648 282 FEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLS 361 (537)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 361 (537)
|+++.+.. +.+..+|..+...+...|++++|+..|+++.+.+ +.+...+..+...+...|++++|...+.+..+..+.
T Consensus 158 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 235 (388)
T 1w3b_A 158 YLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN 235 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 99998763 3367889999999999999999999999999864 446778899999999999999999999999887543
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHH
Q 047648 362 PSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILV 441 (537)
Q Consensus 362 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 441 (537)
+..++..+..++.+.|++++|...++++.+.++. ++.+|..+...+.+.|++++|...++++.+.. +.+..++..+.
T Consensus 236 -~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 312 (388)
T 1w3b_A 236 -HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLA 312 (388)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHH
Confidence 6788899999999999999999999999987654 67889999999999999999999999999874 67788999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhc
Q 047648 442 GALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPN-QTTYQIVREEMMEK 520 (537)
Q Consensus 442 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~ 520 (537)
..+...|++++|.+.++++++. .+.+..++..++.+|.+.|++++|...++++++ +.|+ ...+..+...+.+.
T Consensus 313 ~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 313 NIKREQGNIEEAVRLYRKALEV----FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTS----CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHHc
Confidence 9999999999999999999753 245688999999999999999999999999998 5565 46677777777665
Q ss_pred C
Q 047648 521 G 521 (537)
Q Consensus 521 g 521 (537)
|
T Consensus 387 ~ 387 (388)
T 1w3b_A 387 Q 387 (388)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-28 Score=236.58 Aligned_cols=384 Identities=15% Similarity=0.088 Sum_probs=331.2
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCC
Q 047648 69 LLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLK 148 (537)
Q Consensus 69 l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 148 (537)
+...+.+.|++++|...+....+. .|.+...+..+...+...|++++|...++...+.. +
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~-------------------~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p 64 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ-------------------EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-P 64 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C
Confidence 455667788888888888777665 15566778888899999999999999999998864 5
Q ss_pred CChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHH
Q 047648 149 SSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILI 228 (537)
Q Consensus 149 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 228 (537)
.+..+|..+...+.+.|++++|...|+++.+..+ .+..+|..+..++.+.|++++|.+.|+++.+..+ .+...+..+.
T Consensus 65 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~ 142 (388)
T 1w3b_A 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLG 142 (388)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHH
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence 6888999999999999999999999999988743 3677899999999999999999999999998742 2445667777
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCC
Q 047648 229 DGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDG 308 (537)
Q Consensus 229 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 308 (537)
..+.. .|++++|.+.|+++..... .+..+|..+...+.+.|++++|...|+++.+.+ +.+...|..+...+...|
T Consensus 143 ~~~~~---~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~ 217 (388)
T 1w3b_A 143 NLLKA---LGRLEEAKACYLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEAR 217 (388)
T ss_dssp HHHHT---TSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred HHHHH---ccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcC
Confidence 78887 8999999999999988643 367899999999999999999999999998864 336778899999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 047648 309 KLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRN 388 (537)
Q Consensus 309 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 388 (537)
++++|+..+.+..... +.+..++..+...+...|++++|...|+++.+.++. +..+|..+..++.+.|++++|...++
T Consensus 218 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 295 (388)
T 1w3b_A 218 IFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYN 295 (388)
T ss_dssp CTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999998864 446788999999999999999999999999987544 67789999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCC
Q 047648 389 SMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKK 468 (537)
Q Consensus 389 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 468 (537)
++.+..+ .+..++..+...+...|++++|...++++.+.. +.+..++..++.+|.+.|++++|.+.|+++++..
T Consensus 296 ~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~---- 369 (388)
T 1w3b_A 296 TALRLCP-THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS---- 369 (388)
T ss_dssp HHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC----
T ss_pred HHHhhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----
Confidence 9998754 488999999999999999999999999999864 5668899999999999999999999999998643
Q ss_pred CCCHHHHHHHHHHHHhcCC
Q 047648 469 WPNIVTYNVLIKGFCQKGK 487 (537)
Q Consensus 469 ~~~~~~~~~l~~~~~~~g~ 487 (537)
+.+...|..+...+...|+
T Consensus 370 p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 370 PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHhHHHHHHHccC
Confidence 3467788888888776653
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.2e-30 Score=251.02 Aligned_cols=206 Identities=19% Similarity=0.282 Sum_probs=134.0
Q ss_pred HHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCC------CCCHHHH
Q 047648 171 EYVYKEMKRRRIELNLD-SFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGG------IGKMYKA 243 (537)
Q Consensus 171 ~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~------~~~~~~a 243 (537)
..+.+.+.+++..+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.+. .+..++|
T Consensus 10 e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A 89 (501)
T 4g26_A 10 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRG 89 (501)
T ss_dssp --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHH
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHH
Confidence 33444444444443332 3556666666666666666666666666666666666666666655221 2335667
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 047648 244 DAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMAS 323 (537)
Q Consensus 244 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 323 (537)
.++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.
T Consensus 90 ~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 90 FDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh
Q 047648 324 GLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCK 376 (537)
Q Consensus 324 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 376 (537)
|+.||..+|+.+|.+|++.|++++|.+++++|.+.+..|+..||+.++..|+.
T Consensus 170 G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 170 EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 77777777777777777777777777777777777777777777777776654
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=9.6e-30 Score=249.13 Aligned_cols=203 Identities=15% Similarity=0.267 Sum_probs=127.5
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCC---------HHHH
Q 047648 244 DAVFKDMVENGILPNE-VTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGK---------LDEA 313 (537)
Q Consensus 244 ~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~A 313 (537)
..+.+++.+.+..+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+. ++.|
T Consensus 10 e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A 89 (501)
T 4g26_A 10 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRG 89 (501)
T ss_dssp --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHH
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHH
Confidence 3344444444443322 23555566666666666666666666666666666666666666655443 4666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047648 314 VALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDR 393 (537)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 393 (537)
.++|++|...|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.
T Consensus 90 ~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 90 FDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 67777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 047648 394 GVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCK 446 (537)
Q Consensus 394 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 446 (537)
|+.||..+|+.++.+|++.|++++|.+++++|.+.+..|+..||+.++..|..
T Consensus 170 G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 170 EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 77777777777777777777777777777777776667777777776666654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.5e-25 Score=218.59 Aligned_cols=381 Identities=12% Similarity=-0.026 Sum_probs=280.1
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047648 117 IIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGL 196 (537)
Q Consensus 117 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 196 (537)
..+......+.+.|++++|++.|+++.+.+ |+..+|..+..++.+.|++++|...++++.+.++ .+..++..++.++
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHH
Confidence 344455556666666666666666666543 4555666666666666666666666666655432 2455566666666
Q ss_pred HhcCChhHHHHHHHHHHhCCCC----------------------------------------------------------
Q 047648 197 CKAGKLNKASDIMEDMKSLGVS---------------------------------------------------------- 218 (537)
Q Consensus 197 ~~~g~~~~a~~~~~~~~~~~~~---------------------------------------------------------- 218 (537)
...|++++|...|+++.+.+..
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 6666666666666665544311
Q ss_pred -------------------C-ChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHH-----CCC--------CCCHHHHHHH
Q 047648 219 -------------------P-KVVTYNILIDGYCKKGGIGKMYKADAVFKDMVE-----NGI--------LPNEVTFNTL 265 (537)
Q Consensus 219 -------------------~-~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~-----~~~--------~p~~~~~~~l 265 (537)
| +...+......+......|++++|...++++.. ..- +.+..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 0 022222222222221126899999999999887 311 1235677888
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 047648 266 IDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLV 345 (537)
Q Consensus 266 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 345 (537)
...+...|++++|...|+++.+... +...+..+..++...|++++|...++++.... +.+...+..+...+...|++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCH
Confidence 8899999999999999999887643 37888889999999999999999999998764 45677888999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047648 346 EKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNEL 425 (537)
Q Consensus 346 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 425 (537)
++|...++++.+..+. +...+..+...+...|++++|...++++.+..+. +..++..+...+...|++++|...++++
T Consensus 321 ~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp THHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999887544 6678888999999999999999999999886544 6778889999999999999999999998
Q ss_pred HHCCCC-CC----hHHHHHHHHHHHh---cCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047648 426 VNNGMR-AG----LVTYNILVGALCK---DGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNE 497 (537)
Q Consensus 426 ~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 497 (537)
.+.... ++ ...+..+..++.. .|++++|.+.++++++.. +.+..++..+..+|...|++++|...+++
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 474 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD----PRSEQAKIGLAQMKLQQEDIDEAITLFEE 474 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC----cccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 875311 11 3388899999999 999999999999998743 34678889999999999999999999999
Q ss_pred HHHcCCCCCHHhHH
Q 047648 498 LLEKGLIPNQTTYQ 511 (537)
Q Consensus 498 ~~~~g~~p~~~~~~ 511 (537)
+.+ +.|+.....
T Consensus 475 a~~--~~~~~~~~~ 486 (514)
T 2gw1_A 475 SAD--LARTMEEKL 486 (514)
T ss_dssp HHH--HCSSHHHHH
T ss_pred HHH--hccccHHHH
Confidence 998 457654443
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-23 Score=206.09 Aligned_cols=375 Identities=11% Similarity=0.016 Sum_probs=219.9
Q ss_pred CchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 047648 113 CRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFV 192 (537)
Q Consensus 113 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 192 (537)
|.+...+..++..+.+.|++++|+++|+++.+.. +.+..++..+..++...|++++|...|+++.+.+.. +..++..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHH
Confidence 6677889999999999999999999999998864 557889999999999999999999999999887543 68889999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCh----hhHHHHHHH------------HhcCCCCCCHHHHHHHHHHHHHCCCC
Q 047648 193 LNGLCKAGKLNKASDIMEDMKSLGVSPKV----VTYNILIDG------------YCKKGGIGKMYKADAVFKDMVENGIL 256 (537)
Q Consensus 193 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~------------~~~~~~~~~~~~a~~~~~~~~~~~~~ 256 (537)
+.+|.+.|++++|.+.|+++.+.. |+. ..+..+... +.. .|++++|+..++++.+.. +
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~---~~~~~~A~~~~~~~~~~~-~ 174 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFG---SGDYTAAIAFLDKILEVC-V 174 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhC-C
Confidence 999999999999999999998863 333 444444333 444 455555655555555432 2
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047648 257 PNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALI 336 (537)
Q Consensus 257 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll 336 (537)
.+..++..+..+|.+.|++++|..+|+++.+.. +.+..+|..+..++...|++++|+..|+++.... +.+...+..+.
T Consensus 175 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~ 252 (450)
T 2y4t_A 175 WDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYK 252 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHH
Confidence 244555555555555555555555555554432 2244555555555555555555555555555432 11222222220
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhc
Q 047648 337 NGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPD----VSTYNCLIAGLSRE 412 (537)
Q Consensus 337 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~ 412 (537)
.. . ....+..++..+...|++++|...++++.+..+. + ...+..+...+.+.
T Consensus 253 ~~-----------------~------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~ 308 (450)
T 2y4t_A 253 QV-----------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKD 308 (450)
T ss_dssp HH-----------------H------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTT
T ss_pred HH-----------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHC
Confidence 00 0 0000011144455555555555555555443211 1 22444455555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHH------------H
Q 047648 413 GNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLI------------K 480 (537)
Q Consensus 413 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~------------~ 480 (537)
|++++|...++++.+.. +.+..+|..+..+|...|++++|.+.|++++++. +.+...+..+. .
T Consensus 309 g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~~~~~~~~ 383 (450)
T 2y4t_A 309 EKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN----ENDQQIREGLEKAQRLLKQSQKRD 383 (450)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS----SSCHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----cchHHHHHHHHHHHHHhhcccchh
Confidence 55555555555554432 2344555555555555555555555555554322 12333444443 2
Q ss_pred HHHhcC-----CHHHHHHHHHH-HHHcCCCCC-----------HHhHHHHHHHHHhcCCcCCccC
Q 047648 481 GFCQKG-----KLEDANGLLNE-LLEKGLIPN-----------QTTYQIVREEMMEKGFIPDIEG 528 (537)
Q Consensus 481 ~~~~~g-----~~~~A~~~~~~-~~~~g~~p~-----------~~~~~~l~~~~~~~g~~~~a~~ 528 (537)
.|...| +.+++.+.+++ .++ ..|| ...+..+..+|...|+-+....
T Consensus 384 ~y~~lg~~~~~~~~~~~~~y~~~~l~--~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~ 446 (450)
T 2y4t_A 384 YYKILGVKRNAKKQEIIKAYRKLALQ--WHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKK 446 (450)
T ss_dssp SGGGSCSSTTCCTTHHHHHHHHHHHH--SCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC--
T ss_pred HHHHhCCCccCCHHHHHHHHHHHHHH--hCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHh
Confidence 244333 56777777776 333 2232 1256667777777776555443
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-23 Score=210.49 Aligned_cols=372 Identities=11% Similarity=-0.006 Sum_probs=311.0
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 047648 63 LLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRA 142 (537)
Q Consensus 63 ~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 142 (537)
...+......+.+.|++++|...++.+++. .|++..+..++.+|.+.|++++|++.|+++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------------------~p~~~~~~~la~~~~~~g~~~~A~~~~~~a 65 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALEL--------------------KEDPVFYSNLSACYVSVGDLKKVVEMSTKA 65 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--------------------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhc--------------------CccHHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 345677888888999999999999888876 246778889999999999999999999999
Q ss_pred hhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCC---------------------------------------
Q 047648 143 GDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIE--------------------------------------- 183 (537)
Q Consensus 143 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------------------------------------- 183 (537)
.+.+ +.+..++..+..++.+.|++++|...|+.+.+.+..
T Consensus 66 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 144 (514)
T 2gw1_A 66 LELK-PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELS 144 (514)
T ss_dssp HHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------
T ss_pred hccC-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 9875 456788999999999999999999999998776421
Q ss_pred ---------------------------------------CCHHHHHHHHHHHHh---cCChhHHHHHHHHHHh-----CC
Q 047648 184 ---------------------------------------LNLDSFNFVLNGLCK---AGKLNKASDIMEDMKS-----LG 216 (537)
Q Consensus 184 ---------------------------------------~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~-----~~ 216 (537)
.+...+......+.. .|++++|...|+++.+ ..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 224 (514)
T 2gw1_A 145 TQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLD 224 (514)
T ss_dssp ------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred CChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhc
Confidence 013333444444444 8999999999999988 31
Q ss_pred CCC--------ChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 047648 217 VSP--------KVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSH 288 (537)
Q Consensus 217 ~~~--------~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 288 (537)
-.| +..++..+...+.. .|++++|...++++...+. +...+..+...+...|++++|...++++...
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 299 (514)
T 2gw1_A 225 KNNEDEKLKEKLAISLEHTGIFKFL---KNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKL 299 (514)
T ss_dssp TSTTCHHHHHHHHHHHHHHHHHHHH---SSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTT
T ss_pred cCccccccChHHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhc
Confidence 122 34567788888888 8999999999999988643 3888899999999999999999999999886
Q ss_pred CCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHH
Q 047648 289 GIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYN 368 (537)
Q Consensus 289 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 368 (537)
. +.+...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++.+..+. +...+.
T Consensus 300 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 376 (514)
T 2gw1_A 300 D-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPN 376 (514)
T ss_dssp C-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHH
T ss_pred C-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHH
Confidence 4 3467789999999999999999999999999864 446778899999999999999999999999887443 667888
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCChHHHHHH
Q 047648 369 TLIDAYCKEGRMEDAFAMRNSMLDRGVL-PD----VSTYNCLIAGLSR---EGNVEGVRNIMNELVNNGMRAGLVTYNIL 440 (537)
Q Consensus 369 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 440 (537)
.+..++...|++++|...++++.+..+. ++ ...+..+...+.. .|++++|...++++.+.. +.+..++..+
T Consensus 377 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 455 (514)
T 2gw1_A 377 FFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGL 455 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 9999999999999999999999875322 11 3488899999999 999999999999999875 5567889999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHch
Q 047648 441 VGALCKDGKSKKAVSLLDEMFKME 464 (537)
Q Consensus 441 ~~~~~~~g~~~~A~~~~~~~~~~~ 464 (537)
..+|.+.|++++|.+.|+++++..
T Consensus 456 a~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 456 AQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhc
Confidence 999999999999999999998743
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.3e-23 Score=203.72 Aligned_cols=336 Identities=14% Similarity=0.071 Sum_probs=233.6
Q ss_pred HHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 047648 138 AFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGV 217 (537)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 217 (537)
.+.+..... +.+...+..++..+.+.|++++|..+|+.+.+.. +.+..++..++.++...|++++|...|+++.+.+
T Consensus 14 ~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 90 (450)
T 2y4t_A 14 GTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK- 90 (450)
T ss_dssp ----------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred ccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-
Confidence 344444332 4466677778888888888888888888877653 3367777788888888888888888888887764
Q ss_pred CCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCh
Q 047648 218 SPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNE---VTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGV 294 (537)
Q Consensus 218 ~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 294 (537)
+.+..++..+..+|.+ .|++++|.+.|+++...... +. ..+..++..+..
T Consensus 91 p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~----------------------- 143 (450)
T 2y4t_A 91 MDFTAARLQRGHLLLK---QGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEM----------------------- 143 (450)
T ss_dssp TTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHH-----------------------
T ss_pred CCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHH-----------------------
Confidence 2256677777777777 77888888888877765321 23 444444333111
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 047648 295 VTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAY 374 (537)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 374 (537)
..+..+...+...|++++|+..++++.+.. +.+...+..+..+|...|++++|...|+++.+..+. +..++..++.+|
T Consensus 144 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 221 (450)
T 2y4t_A 144 QRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLY 221 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 012223344556677777777777766643 345666667777777777777777777776655322 566677777777
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCC-----hHHH
Q 047648 375 CKEGRMEDAFAMRNSMLDRGVLPDVSTYNCL------------IAGLSREGNVEGVRNIMNELVNNGMRAG-----LVTY 437 (537)
Q Consensus 375 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~ 437 (537)
...|++++|...++++.+..+. +...+..+ ...+...|++++|...|+++.+.. |+ ...+
T Consensus 222 ~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~ 298 (450)
T 2y4t_A 222 YQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSK 298 (450)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHH
Confidence 7777777777777777665333 34444433 888999999999999999999864 43 4578
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HhHHHHH
Q 047648 438 NILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQ-TTYQIVR 514 (537)
Q Consensus 438 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~ 514 (537)
..++.++.+.|++++|++.++++++.. +.+..+|..++.+|...|++++|...++++++ +.|+. ..+..+.
T Consensus 299 ~~l~~~~~~~g~~~~A~~~~~~a~~~~----p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 299 ERICHCFSKDEKPVEAIRVCSEVLQME----PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC----cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 899999999999999999999998643 44789999999999999999999999999998 56765 4444444
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.94 E-value=5.2e-23 Score=207.17 Aligned_cols=405 Identities=11% Similarity=0.026 Sum_probs=312.6
Q ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHH
Q 047648 63 LLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRA 142 (537)
Q Consensus 63 ~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 142 (537)
...+..+...+.+.|++++|...++..++. .|.++..+..+..+|.+.|++++|++.|+++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 85 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIEL-------------------DPNEPVFYSNISACYISTGDLEKVIEFTTKA 85 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHH-------------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhh-------------------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455677888888888888888888887765 1567789999999999999999999999999
Q ss_pred hhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC------
Q 047648 143 GDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLG------ 216 (537)
Q Consensus 143 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------ 216 (537)
.+.+ +.+..++..+..++...|++++|...|+ ..... |+ .....+..+...+...+|...++++....
T Consensus 86 l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~--~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~ 159 (537)
T 3fp2_A 86 LEIK-PDHSKALLRRASANESLGNFTDAMFDLS-VLSLN--GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQ 159 (537)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------C
T ss_pred HhcC-CchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcC--CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCcccccc
Confidence 9875 4578889999999999999999999996 33332 22 22223445556666678888888875531
Q ss_pred CCCChh------------------------------hHHHHHHHHhcCC-----CCCCHHHHHHHHHHHHHCCCCCC---
Q 047648 217 VSPKVV------------------------------TYNILIDGYCKKG-----GIGKMYKADAVFKDMVENGILPN--- 258 (537)
Q Consensus 217 ~~~~~~------------------------------~~~~ll~~~~~~~-----~~~~~~~a~~~~~~~~~~~~~p~--- 258 (537)
..|+.. ....+...+.... ..+++++|..+++++.+.... +
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~ 238 (537)
T 3fp2_A 160 VLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPL 238 (537)
T ss_dssp CCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHH
T ss_pred ccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchh
Confidence 112211 1122222222100 014788899999998875322 2
Q ss_pred ----HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 047648 259 ----EVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNA 334 (537)
Q Consensus 259 ----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 334 (537)
..++..+...+...|++++|...|+++.+. .|+...+..+...+...|++++|.+.+.++.+.. +.+..++..
T Consensus 239 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 315 (537)
T 3fp2_A 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYH 315 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHH
Confidence 235677778888999999999999999886 4557888899999999999999999999998864 456788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 047648 335 LINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGN 414 (537)
Q Consensus 335 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 414 (537)
+...+...|++++|...++++.+..+. +...+..+..++...|++++|...++++.+..+. +...+..+...+...|+
T Consensus 316 l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 393 (537)
T 3fp2_A 316 RGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGD 393 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCC
Confidence 999999999999999999999887544 5678889999999999999999999999987544 67789999999999999
Q ss_pred HHHHHHHHHHHHHCCC-----CCChHHHHHHHHHHHhc----------CChHHHHHHHHHHHHchhcCCCCCHHHHHHHH
Q 047648 415 VEGVRNIMNELVNNGM-----RAGLVTYNILVGALCKD----------GKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLI 479 (537)
Q Consensus 415 ~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ 479 (537)
+++|...++++.+... ......+.....++... |++++|...|+++++.. +.+..++..+.
T Consensus 394 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~----p~~~~~~~~l~ 469 (537)
T 3fp2_A 394 FDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD----PRSEQAKIGLA 469 (537)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC----TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC----CCCHHHHHHHH
Confidence 9999999999887521 11223345556778888 99999999999998743 44678999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Q 047648 480 KGFCQKGKLEDANGLLNELLEKG 502 (537)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~~g 502 (537)
.+|...|++++|.+.|+++.+..
T Consensus 470 ~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 470 QLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhccHHHHHHHHHHHHHhC
Confidence 99999999999999999999943
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=7.4e-23 Score=206.04 Aligned_cols=399 Identities=12% Similarity=0.048 Sum_probs=311.6
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047648 116 SIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNG 195 (537)
Q Consensus 116 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 195 (537)
...+..+...+.+.|++++|++.|+++.+.. +.+..++..+..++.+.|++++|.+.|+++.+.++. +..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Confidence 4677889999999999999999999999875 557889999999999999999999999999987643 78899999999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHC------CCCCCHH---------
Q 047648 196 LCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVEN------GILPNEV--------- 260 (537)
Q Consensus 196 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~------~~~p~~~--------- 260 (537)
+...|++++|.+.|+ .... .|+.. ...+..+.. .+...+|...++++... ...|+..
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~--~~~~~--~~~~~~~~~---~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 174 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSL--NGDFD--GASIEPMLE---RNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIF 174 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHH---HHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTS
T ss_pred HHHcCCHHHHHHHHH-HHhc--CCCCC--hHHHHHHHH---HHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhc
Confidence 999999999999997 3333 22221 112223333 34556777777776432 1112221
Q ss_pred ---------------------HHHHHHHHHhc--------cCCHHHHHHHHHHHHhCCCCCC-------hhhHHHHHHHH
Q 047648 261 ---------------------TFNTLIDGFCK--------DENISAAMKVFEEMGSHGIAAG-------VVTYNSLINGL 304 (537)
Q Consensus 261 ---------------------~~~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~ 304 (537)
....+...+.. .|++++|..+|+++.+.... + ..++..+...+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 175 DSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFH 253 (537)
T ss_dssp CHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHH
Confidence 12222222222 24789999999999876322 2 23466777888
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHH
Q 047648 305 CVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAF 384 (537)
Q Consensus 305 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 384 (537)
...|++++|...++++.+. .|+...+..+...+...|++++|...++++.+..+. +..++..+..++...|++++|.
T Consensus 254 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHH
Confidence 8999999999999999986 456888999999999999999999999999887544 7888999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHch
Q 047648 385 AMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKME 464 (537)
Q Consensus 385 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 464 (537)
..++++.+..+. +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.|+++++..
T Consensus 331 ~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 331 EDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 999999987654 67889999999999999999999999999875 5667899999999999999999999999998865
Q ss_pred hcCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCC-CHHhHHHHHHHHHhcCCcCCccCCCC
Q 047648 465 KEKKWP--NIVTYNVLIKGFCQK----------GKLEDANGLLNELLEKGLIP-NQTTYQIVREEMMEKGFIPDIEGHMY 531 (537)
Q Consensus 465 ~~~~~~--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~l~ 531 (537)
+..... ....+..+..++... |++++|...++++++.. | +...+..+...+.+.|++++|...+.
T Consensus 409 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 486 (537)
T 3fp2_A 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD--PRSEQAKIGLAQLKLQMEKIDEAIELFE 486 (537)
T ss_dssp HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 443222 233455666778888 99999999999999853 4 56788999999999999999876654
Q ss_pred c
Q 047648 532 N 532 (537)
Q Consensus 532 ~ 532 (537)
.
T Consensus 487 ~ 487 (537)
T 3fp2_A 487 D 487 (537)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-19 Score=172.69 Aligned_cols=329 Identities=13% Similarity=0.067 Sum_probs=214.6
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 047648 151 VLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDG 230 (537)
Q Consensus 151 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 230 (537)
+..+..+...+...|++++|...|+.+.+..+ .+..++..+..++...|++++|...++++.+.. +.+...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 44556666667777777777777777666532 256666666677777777777777777766653 1244556666666
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCC
Q 047648 231 YCKKGGIGKMYKADAVFKDMVENGIL--PNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDG 308 (537)
Q Consensus 231 ~~~~~~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 308 (537)
+.. .|++++|...+++..+.... .+...+..+..... ...+..+...+...|
T Consensus 81 ~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~ 134 (359)
T 3ieg_A 81 LLK---QGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGA 134 (359)
T ss_dssp HHH---HTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTT
T ss_pred HHH---cCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHcc
Confidence 666 66666777766666654210 12222222211100 011222345666777
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 047648 309 KLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRN 388 (537)
Q Consensus 309 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 388 (537)
++++|++.++++.+.. +.+...+..+...+...|++++|...++++.+..+. +...+..+...+...|++++|...++
T Consensus 135 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~ 212 (359)
T 3ieg_A 135 DYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVR 212 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777777776653 345666777777777777777777777777665433 56677777777777777777777777
Q ss_pred HHHhCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHHhcCChHH
Q 047648 389 SMLDRGVLPDVSTYN------------CLIAGLSREGNVEGVRNIMNELVNNGMRAGL----VTYNILVGALCKDGKSKK 452 (537)
Q Consensus 389 ~~~~~~~~p~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~ 452 (537)
+..+..+. +...+. .+...+...|++++|...++++.+.. +.+. ..+..+..++...|++++
T Consensus 213 ~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~ 290 (359)
T 3ieg_A 213 ECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVE 290 (359)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHH
Confidence 77765433 333332 23566788899999999998888764 2233 235567788889999999
Q ss_pred HHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HhHHHHHHHH
Q 047648 453 AVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQ-TTYQIVREEM 517 (537)
Q Consensus 453 A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~-~~~~~l~~~~ 517 (537)
|.+.++++++.. +.+..+|..+..++...|++++|...++++++ +.|+. ..+..+..+.
T Consensus 291 A~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 291 AIRICSEVLQME----PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC----cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHH
Confidence 999999988642 34778888899999999999999999999988 45664 4444444443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-19 Score=172.61 Aligned_cols=333 Identities=10% Similarity=-0.013 Sum_probs=219.1
Q ss_pred hHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047648 115 NSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLN 194 (537)
Q Consensus 115 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 194 (537)
++..+..+...+...|++++|++.|+++.+.. +.+..++..+...+...|++++|...|+.+.+.... +...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHH
Confidence 34667788999999999999999999999874 457889999999999999999999999999887533 7788999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCC--CChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 047648 195 GLCKAGKLNKASDIMEDMKSLGVS--PKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKD 272 (537)
Q Consensus 195 ~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 272 (537)
++...|++++|...|+++.+.... .+...+..+.... . ...+..+...+...
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~----------------~~~~~~~a~~~~~~ 133 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKAD----------E----------------MQRLRSQALDAFDG 133 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH----------H----------------HHHHHHHHHHHHHT
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHH----------H----------------HHHHHHHHHHHHHc
Confidence 999999999999999999886320 1233333331100 0 01122233444455
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047648 273 ENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLF 352 (537)
Q Consensus 273 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 352 (537)
|++++|..+++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+...+...|++++|...+
T Consensus 134 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 211 (359)
T 3ieg_A 134 ADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEV 211 (359)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555555554432 2234445555555555555555555555555432 334455555555555555555555555
Q ss_pred HHHHHcCCCCCHhHH------------HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHH
Q 047648 353 DDISEQGLSPSVITY------------NTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDV----STYNCLIAGLSREGNVE 416 (537)
Q Consensus 353 ~~~~~~~~~~~~~~~------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~ 416 (537)
++..+..+. +...+ ..+...+.+.|++++|...++++.+..+. +. ..+..+...+...|+++
T Consensus 212 ~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~ 289 (359)
T 3ieg_A 212 RECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPV 289 (359)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHH
Confidence 555544222 22222 12355677788888888888887775433 33 23445677778888888
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHh
Q 047648 417 GVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQ 484 (537)
Q Consensus 417 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 484 (537)
+|...+++..+.. +.+..++..+..++...|++++|.+.|++++++. +.+...+..+..+...
T Consensus 290 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~----p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 290 EAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN----ENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCChHHHHHHHHHHHH
Confidence 8888888887763 4467778888888888888888888888887543 3356666666666544
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.88 E-value=3.2e-18 Score=171.54 Aligned_cols=422 Identities=10% Similarity=-0.003 Sum_probs=306.2
Q ss_pred HHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHc
Q 047648 50 FCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKN 129 (537)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 129 (537)
|+..++. .|.+..++..++.. ...|++++|..+++.+++. .|.+...|...+..+.+.
T Consensus 2 le~al~~--~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-------------------~P~~~~~w~~~~~~~~~~ 59 (530)
T 2ooe_A 2 AEKKLEE--NPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQ-------------------FPSSGRFWKLYIEAEIKA 59 (530)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-------------------CTTCHHHHHHHHHHHHHT
T ss_pred hhhHhhh--CCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-------------------CCCCHHHHHHHHHHHHhc
Confidence 3444454 57788889888884 7788999999988888876 366778999999999999
Q ss_pred CCchHHHHHHHHHhhCCCCCChhhHHHHHHHH-HhCCChhHHHH----HHHHHHh-CCCCC-CHHHHHHHHHHHHh----
Q 047648 130 MKPHLGFEAFKRAGDYGLKSSVLSCNQLLRAL-VKEGKFEDVEY----VYKEMKR-RRIEL-NLDSFNFVLNGLCK---- 198 (537)
Q Consensus 130 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~-~~~~~-~~~~~~~l~~~~~~---- 198 (537)
|++++|..+|++++... |++..|...+... ...|+.++|.+ +|+.... .|..| +...|...+.....
T Consensus 60 ~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~ 137 (530)
T 2ooe_A 60 KNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAV 137 (530)
T ss_dssp TCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCC
T ss_pred CCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCc
Confidence 99999999999999863 5777888777533 45678777765 6766654 34333 56678777776654
Q ss_pred -----cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhc----------CCCCCCHHHHHHHHHHHH------HCC---
Q 047648 199 -----AGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCK----------KGGIGKMYKADAVFKDMV------ENG--- 254 (537)
Q Consensus 199 -----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----------~~~~~~~~~a~~~~~~~~------~~~--- 254 (537)
.|+++.|..+|++..+....+....|......... ....+++.+|..+++.+. +..
T Consensus 138 ~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~ 217 (530)
T 2ooe_A 138 GSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPS 217 (530)
T ss_dssp SSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCC
T ss_pred ccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 78999999999999883111112334332221100 001356677777766532 111
Q ss_pred CCCC--------HHHHHHHHHHHhcc----CCH----HHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-------CCCHH
Q 047648 255 ILPN--------EVTFNTLIDGFCKD----ENI----SAAMKVFEEMGSHGIAAGVVTYNSLINGLCV-------DGKLD 311 (537)
Q Consensus 255 ~~p~--------~~~~~~l~~~~~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~ 311 (537)
++|+ ...|...+...... ++. +.+..+|+++.... +.+...|...+..+.+ .|+++
T Consensus 218 ~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~ 296 (530)
T 2ooe_A 218 VPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMN 296 (530)
T ss_dssp CCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCH
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchh
Confidence 2443 24555554433221 232 47788899887752 3467888888887775 79987
Q ss_pred -------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-hHHHHHHHHHHhcCChHHH
Q 047648 312 -------EAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSV-ITYNTLIDAYCKEGRMEDA 383 (537)
Q Consensus 312 -------~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A 383 (537)
+|..++++..+.-.+.+...|..++..+.+.|++++|..+|+++.+..+. +. ..|...+..+.+.|++++|
T Consensus 297 ~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A 375 (530)
T 2ooe_A 297 NAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSG 375 (530)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHH
Confidence 89999999986323446788999999999999999999999999986332 33 5888889989999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 384 FAMRNSMLDRGVLPDVSTYNCLIAG-LSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 384 ~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
..+|++..+.... +...|...... +...|+.++|..+|++.++.. +.+...|..++..+.+.|+.++|+.+|++++.
T Consensus 376 ~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~ 453 (530)
T 2ooe_A 376 RMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 453 (530)
T ss_dssp HHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHh
Confidence 9999999986432 33333333222 346899999999999998864 45688999999999999999999999999986
Q ss_pred chhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 463 MEKEKKWP--NIVTYNVLIKGFCQKGKLEDANGLLNELLEK 501 (537)
Q Consensus 463 ~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (537)
..+ ..| ....|...+......|+.+.+..+.+++.+.
T Consensus 454 ~~~--~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 454 SGS--LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp SCC--SCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred ccC--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 322 233 3558888898888999999999999999883
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.4e-17 Score=160.38 Aligned_cols=357 Identities=14% Similarity=0.069 Sum_probs=284.8
Q ss_pred chHHHHHHHHHHHHH----cCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----CCChhHHHHHHHHHHhCCCCCC
Q 047648 114 RNSIIIDMLMLAYVK----NMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVK----EGKFEDVEYVYKEMKRRRIELN 185 (537)
Q Consensus 114 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 185 (537)
.++..+..+...|.. .+++++|++.|++..+.| +..++..+...+.. .+++++|.+.|++..+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 345666677777887 889999999999988764 56778888888888 889999999999988765 6
Q ss_pred HHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcC-CCCCCHHHHHHHHHHHHHCCCCCCHH
Q 047648 186 LDSFNFVLNGLCK----AGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKK-GGIGKMYKADAVFKDMVENGILPNEV 260 (537)
Q Consensus 186 ~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~~~~a~~~~~~~~~~~~~p~~~ 260 (537)
...+..+...|.. .+++++|.+.|++..+.| +...+..+...|... +-.++.++|++.|++..+.| +..
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~ 184 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVW 184 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 6777778888887 789999999999988875 566677777777641 11478899999999888764 667
Q ss_pred HHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHHHH
Q 047648 261 TFNTLIDGFCK----DENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCV----DGKLDEAVALRDEMMASGLKPNVVTS 332 (537)
Q Consensus 261 ~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~ 332 (537)
.+..+...|.. .+++++|..+|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 258 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ 258 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 78888888877 789999999999988764 56677777777775 788999999999888754 45666
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCHHHHH
Q 047648 333 NALINGFCK----KKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKE-----GRMEDAFAMRNSMLDRGVLPDVSTYN 403 (537)
Q Consensus 333 ~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~ 403 (537)
..+...|.. .++.++|...|++..+.+ +...+..+...|... +++++|...+++..+.+ +...+.
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 332 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQA 332 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHH
Confidence 777777777 788999999999887764 556777788888877 88999999999988875 556777
Q ss_pred HHHHHHHhcC---CHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh----cCChHHHHHHHHHHHHchhcCCCCCHHHHH
Q 047648 404 CLIAGLSREG---NVEGVRNIMNELVNNGMRAGLVTYNILVGALCK----DGKSKKAVSLLDEMFKMEKEKKWPNIVTYN 476 (537)
Q Consensus 404 ~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 476 (537)
.+...|...| +.++|.+.|++..+.+ +...+..+...|.. .+++++|.+.|+++.+ ..+...+.
T Consensus 333 ~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~------~~~~~a~~ 403 (490)
T 2xm6_A 333 NLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE------QGLSAAQV 403 (490)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH------TTCHHHHH
T ss_pred HHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh------CCCHHHHH
Confidence 7777777766 7888999999988864 56788888888888 8899999999999876 23567888
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCC
Q 047648 477 VLIKGFCQ----KGKLEDANGLLNELLEKGL 503 (537)
Q Consensus 477 ~l~~~~~~----~g~~~~A~~~~~~~~~~g~ 503 (537)
.+...|.. .+++++|...|++..+.+.
T Consensus 404 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 404 QLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 88888887 8899999999999988663
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.2e-19 Score=165.92 Aligned_cols=291 Identities=11% Similarity=-0.037 Sum_probs=187.9
Q ss_pred CChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHH
Q 047648 219 PKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYN 298 (537)
Q Consensus 219 ~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 298 (537)
.+...+..+...+.. .|++++|+++++++..... .+...+..++..+...|++++|..+++++.+.. +.+...+.
T Consensus 20 ~~~~~~~~~a~~~~~---~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 94 (330)
T 3hym_B 20 ENLDVVVSLAERHYY---NCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWF 94 (330)
T ss_dssp CCCTTHHHHHHHHHH---TTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHH
T ss_pred hhHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHH
Confidence 344555555555555 5666666666666655432 234445555566666666666666666665542 22455666
Q ss_pred HHHHHHHhCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc
Q 047648 299 SLINGLCVDG-KLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKE 377 (537)
Q Consensus 299 ~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 377 (537)
.+...+...| ++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+...|...
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHH
Confidence 6666666666 6667777776666543 334556666667777777777777777776665433 345555677777777
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCChHHHHHHHHHHHhcCC
Q 047648 378 GRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNG--------MRAGLVTYNILVGALCKDGK 449 (537)
Q Consensus 378 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~ 449 (537)
|++++|...++++.+..+. +...+..+...+...|++++|...++++.+.. .+....++..+..++...|+
T Consensus 173 ~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 251 (330)
T 3hym_B 173 NNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK 251 (330)
T ss_dssp TCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcC
Confidence 7777777777777766443 56677777777777777777777777776531 13335677778888888888
Q ss_pred hHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHH-HhcCCc
Q 047648 450 SKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPN-QTTYQIVREEM-MEKGFI 523 (537)
Q Consensus 450 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~-~~~g~~ 523 (537)
+++|.+.++++++.. +.+...|..+..++...|++++|...++++++ +.|+ ...+..+...+ ...|+.
T Consensus 252 ~~~A~~~~~~a~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 252 YAEALDYHRQALVLI----PQNASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHHHS----TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHHhhC----ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchHHHHHHHHHHHHHhCch
Confidence 888888888887643 33567777888888888888888888888776 4454 45555555555 344443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.7e-19 Score=166.89 Aligned_cols=292 Identities=10% Similarity=-0.028 Sum_probs=194.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 047648 185 NLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNT 264 (537)
Q Consensus 185 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ 264 (537)
+...+..++..+...|++++|.++|+++.+.. +.+...+..++..+.. .|++++|...++++.+... .+...+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~---~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 95 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVE---LNKANELFYLSHKLVDLYP-SNPVSWFA 95 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHH---HTCHHHHHHHHHHHHHHCT-TSTHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHH---hhhHHHHHHHHHHHHHhCc-CCHHHHHH
Confidence 44455556666666666666666666666553 2234455555555655 5667777776666665422 24556666
Q ss_pred HHHHHhccC-CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 047648 265 LIDGFCKDE-NISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKK 343 (537)
Q Consensus 265 l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 343 (537)
+...+...| ++++|...|+++.+.. +.+...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHh
Confidence 666666666 6777777777766543 2245566677777777777777777777776653 233455666777777777
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhcCCH
Q 047648 344 LVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRG--------VLPDVSTYNCLIAGLSREGNV 415 (537)
Q Consensus 344 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~~~~~ 415 (537)
++++|...++++.+..+. +...+..+...+...|++++|...++++.+.. ...+..++..+...+...|++
T Consensus 174 ~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 777777777777665433 56677777777778888888888777776531 123456777888888888888
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHH-HhcCCHH
Q 047648 416 EGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGF-CQKGKLE 489 (537)
Q Consensus 416 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 489 (537)
++|...+++..+.. +.+...+..+..++...|++++|.+.|+++++.. +.+...+..+..++ ...|+.+
T Consensus 253 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 253 AEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR----RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC----SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC----CCchHHHHHHHHHHHHHhCchh
Confidence 88888888888764 4566778888888888888888888888886532 34667777777777 4455543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-16 Score=157.38 Aligned_cols=399 Identities=14% Similarity=0.046 Sum_probs=318.4
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHh----cCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHH
Q 047648 46 ILRYFCWSTKELRASHSLLLTGRLLHSLVV----AKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDM 121 (537)
Q Consensus 46 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (537)
++..+..... +.+..++..+...+.. .+++++|...++...+.| ++..+..
T Consensus 26 ~~~~~~~~a~----~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---------------------~~~a~~~ 80 (490)
T 2xm6_A 26 NLEQLKQKAE----SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---------------------YTPAEYV 80 (490)
T ss_dssp CHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------------------CHHHHHH
T ss_pred HHHHHHHHHH----CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---------------------CHHHHHH
Confidence 3455555443 2467778888888887 788999999888877663 2456667
Q ss_pred HHHHHHH----cCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----CCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047648 122 LMLAYVK----NMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVK----EGKFEDVEYVYKEMKRRRIELNLDSFNFVL 193 (537)
Q Consensus 122 l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 193 (537)
|...|.. .+++++|++.|++..+.| +..++..+...+.. .+++++|...|++..+.| +...+..+.
T Consensus 81 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg 154 (490)
T 2xm6_A 81 LGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMG 154 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 8888988 999999999999999865 66778888888888 889999999999998875 677888888
Q ss_pred HHHHh----cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhc-CCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 047648 194 NGLCK----AGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCK-KGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDG 268 (537)
Q Consensus 194 ~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 268 (537)
..|.. .++.++|.+.|++..+.| +...+..+...|.. .+..++.++|.+.|++..+.| +...+..+...
T Consensus 155 ~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 228 (490)
T 2xm6_A 155 DAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADM 228 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 88887 789999999999999875 67777777777765 122588999999999998875 56778888888
Q ss_pred Hhc----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047648 269 FCK----DENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCV----DGKLDEAVALRDEMMASGLKPNVVTSNALINGFC 340 (537)
Q Consensus 269 ~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 340 (537)
|.. .+++++|..+|++..+.+ +...+..+...|.. .+++++|++.|++..+.| +...+..+...|.
T Consensus 229 y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~ 302 (490)
T 2xm6_A 229 YYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYD 302 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHH
Confidence 876 789999999999998864 56677778788877 899999999999998764 5667778888888
Q ss_pred hc-----CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC---ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-
Q 047648 341 KK-----KLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEG---RMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSR- 411 (537)
Q Consensus 341 ~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~- 411 (537)
.. +++++|...|++..+.+ +...+..+...|...| ++++|.+.+++..+.+ ++..+..+...|..
T Consensus 303 ~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g 376 (490)
T 2xm6_A 303 KGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQG 376 (490)
T ss_dssp HCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred cCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 87 89999999999998875 5567778888888766 7899999999999874 77888999999988
Q ss_pred ---cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh----cCChHHHHHHHHHHHHchhcCCCC-CHHHHHHHHHHHH
Q 047648 412 ---EGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCK----DGKSKKAVSLLDEMFKMEKEKKWP-NIVTYNVLIKGFC 483 (537)
Q Consensus 412 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 483 (537)
.+++++|...|++..+.+ +...+..+...|.. .+++++|...|+++.+.... .| +......+...+.
T Consensus 377 ~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~--~~~~~~a~~~l~~~~~ 451 (490)
T 2xm6_A 377 KGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN--LFGTENRNITEKKLTA 451 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC--HHHHHHHHHHHTTSCH
T ss_pred CCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC--CcCCHHHHHHHHhcCH
Confidence 899999999999999875 57788889999998 89999999999999874411 12 3444444433332
Q ss_pred hcCCHHHHHHHHHHHHH
Q 047648 484 QKGKLEDANGLLNELLE 500 (537)
Q Consensus 484 ~~g~~~~A~~~~~~~~~ 500 (537)
.+.+.+.+..++..+
T Consensus 452 --~~~~~a~~~a~~~~~ 466 (490)
T 2xm6_A 452 --KQLQQAELLSQQYIE 466 (490)
T ss_dssp --HHHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHH
Confidence 234555555555544
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3.3e-19 Score=170.14 Aligned_cols=294 Identities=11% Similarity=0.028 Sum_probs=199.5
Q ss_pred hcCChhHHHH-HHHHHHhCCCC-C--ChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 047648 198 KAGKLNKASD-IMEDMKSLGVS-P--KVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDE 273 (537)
Q Consensus 198 ~~g~~~~a~~-~~~~~~~~~~~-~--~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 273 (537)
..|++++|.+ .+++....... | +...+..+...+.. .|++++|+..++++.+.. +.+..++..+...+.+.|
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQ---EGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHH---TTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHH---CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 3456666666 55544432111 1 24455566666666 667777777777766653 225566666666677777
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH---------------HHHH
Q 047648 274 NISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNA---------------LING 338 (537)
Q Consensus 274 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~---------------ll~~ 338 (537)
++++|...|+++.+.. +.+..++..+..++...|++++|++.++++..... .+...+.. .+..
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTP-AYAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-TTGGGCC---------------CTTHH
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 7777777777666543 23556666666777777777777777777666431 11111111 1333
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 047648 339 FCKKKLVEKARVLFDDISEQGLSP-SVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEG 417 (537)
Q Consensus 339 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 417 (537)
+...|++++|...++++.+..+.. +..++..+..+|...|++++|...++++.+..+. +..++..+...+...|++++
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHH
Confidence 337888999999998888764332 4778888888999999999999999998876543 67888889999999999999
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCC-------CHHHHHHHHHHHHhcCCHHH
Q 047648 418 VRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWP-------NIVTYNVLIKGFCQKGKLED 490 (537)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~ 490 (537)
|...++++.+.. +.+..++..+..+|.+.|++++|...|++++++.+....| ...+|..+..+|...|++++
T Consensus 270 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 348 (368)
T 1fch_A 270 AVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA 348 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence 999999988864 5567888889999999999999999999998766543222 26788999999999999999
Q ss_pred HHHHHHHHH
Q 047648 491 ANGLLNELL 499 (537)
Q Consensus 491 A~~~~~~~~ 499 (537)
|..++++.+
T Consensus 349 A~~~~~~~l 357 (368)
T 1fch_A 349 YGAADARDL 357 (368)
T ss_dssp HHHHHTTCH
T ss_pred HHHhHHHHH
Confidence 988877543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.84 E-value=9.5e-17 Score=160.81 Aligned_cols=406 Identities=12% Similarity=0.053 Sum_probs=294.8
Q ss_pred CchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 047648 113 CRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFV 192 (537)
Q Consensus 113 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 192 (537)
|.+..+|..++. +.+.|++++|..+|+++.+. .|.+...|...+..+.+.|++++|..+|++..... |+...|..+
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHH
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHH
Confidence 567788999998 48899999999999999986 46678899999999999999999999999999874 588888777
Q ss_pred HHHH-HhcCChhHHHH----HHHHHHhC-CCCC-ChhhHHHHHHHHhcCC------CCCCHHHHHHHHHHHHHCCCCCCH
Q 047648 193 LNGL-CKAGKLNKASD----IMEDMKSL-GVSP-KVVTYNILIDGYCKKG------GIGKMYKADAVFKDMVENGILPNE 259 (537)
Q Consensus 193 ~~~~-~~~g~~~~a~~----~~~~~~~~-~~~~-~~~~~~~ll~~~~~~~------~~~~~~~a~~~~~~~~~~~~~p~~ 259 (537)
+... ...|+.+.|.+ +|++.... |..| +...|...+....... ..|++++|..+|++.......+..
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~ 165 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE 165 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence 7533 45688887765 77766543 5444 4566777666543310 047889999999998873111112
Q ss_pred HHHHHHHHHH-------------hccCCHHHHHHHHHHH------HhCC---CCCC--------hhhHHHHHHHHHhC--
Q 047648 260 VTFNTLIDGF-------------CKDENISAAMKVFEEM------GSHG---IAAG--------VVTYNSLINGLCVD-- 307 (537)
Q Consensus 260 ~~~~~l~~~~-------------~~~g~~~~a~~~~~~~------~~~~---~~~~--------~~~~~~l~~~~~~~-- 307 (537)
..|....... .+.+++..|..++..+ .+.. ++|+ ...|...+......
T Consensus 166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~ 245 (530)
T 2ooe_A 166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL 245 (530)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence 3343322211 1345677888777763 2221 2333 23455544333222
Q ss_pred --CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHcCCCCCHhHH
Q 047648 308 --GKL----DEAVALRDEMMASGLKPNVVTSNALINGFCK-------KKLVE-------KARVLFDDISEQGLSPSVITY 367 (537)
Q Consensus 308 --~~~----~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~ 367 (537)
++. +.+..+|++++... +.+...|...+..+.+ .|+++ +|..+|++..+.-.+.+...|
T Consensus 246 ~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~ 324 (530)
T 2ooe_A 246 RTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLY 324 (530)
T ss_dssp CCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHH
Confidence 232 47888999988863 4567888888888775 68887 899999999863223368889
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH-HH
Q 047648 368 NTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDV-STYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGA-LC 445 (537)
Q Consensus 368 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 445 (537)
..++..+.+.|++++|..+|+++++..+. +. ..|..++..+.+.|++++|..+|++..+.. +.+...|...+.. +.
T Consensus 325 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~ 402 (530)
T 2ooe_A 325 FAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYY 402 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHH
Confidence 99999999999999999999999986433 33 589999999999999999999999999863 3334444333322 34
Q ss_pred hcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC--HHhHHHHHHHHHhcCC
Q 047648 446 KDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGL-IPN--QTTYQIVREEMMEKGF 522 (537)
Q Consensus 446 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~-~p~--~~~~~~l~~~~~~~g~ 522 (537)
..|++++|+.+|+++++.. +.+...|..++..+.+.|+.++|..+|++.+..+. .|+ ...|...++...+.|+
T Consensus 403 ~~~~~~~A~~~~e~al~~~----p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~ 478 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKKY----GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 478 (530)
T ss_dssp HTCCHHHHHHHHHHHHHHH----TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSC
T ss_pred HcCChhHHHHHHHHHHHHC----CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence 6899999999999998744 34688999999999999999999999999998642 332 3477777887888888
Q ss_pred cCCccCC
Q 047648 523 IPDIEGH 529 (537)
Q Consensus 523 ~~~a~~~ 529 (537)
.+.+..+
T Consensus 479 ~~~~~~~ 485 (530)
T 2ooe_A 479 LASILKV 485 (530)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-18 Score=164.95 Aligned_cols=309 Identities=10% Similarity=-0.011 Sum_probs=190.6
Q ss_pred HHHcCCchHHHH-HHHHHhhCCCC---CChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 047648 126 YVKNMKPHLGFE-AFKRAGDYGLK---SSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGK 201 (537)
Q Consensus 126 ~~~~g~~~~A~~-~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 201 (537)
+.-.|++++|++ .|++....... .+...+..+...+.+.|++++|...|+++.+... .+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcC
Confidence 444577888887 77766554211 1345677778888888888888888888887643 367778888888888888
Q ss_pred hhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 047648 202 LNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKV 281 (537)
Q Consensus 202 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 281 (537)
+++|.+.|+++.+.. +.+..++..+...+.. .|++++|...++++...... +...+..+... ..
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~---- 177 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTN---ESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG---- 177 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSTT-TGGGCC------------------
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh----
Confidence 888888888887764 2366677777777777 78888888888887765322 22222111000 00
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 047648 282 FEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKP-NVVTSNALINGFCKKKLVEKARVLFDDISEQGL 360 (537)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 360 (537)
. .. ....+. .+..+...|++++|+..++++.+..... +..++..+...+...|++++|...++++.+..+
T Consensus 178 ---~----~~-~~~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 248 (368)
T 1fch_A 178 ---G----AG-LGPSKR-ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP 248 (368)
T ss_dssp ----------------C-TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred ---h----hc-ccHHHH-HHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 0 00 000111 1222236667777777777766653111 456666777777777777777777777666533
Q ss_pred CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---------
Q 047648 361 SPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMR--------- 431 (537)
Q Consensus 361 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------- 431 (537)
. +...+..+..++...|++++|...++++.+..+. +..++..+..++...|++++|...|+++.+....
T Consensus 249 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 326 (368)
T 1fch_A 249 N-DYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGG 326 (368)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CC
T ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcccccc
Confidence 2 5566777777777777777777777777665433 5667777777777777777777777777664211
Q ss_pred -CChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 432 -AGLVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 432 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
....+|..+..+|...|++++|..++++.++
T Consensus 327 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 327 AMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp CCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred chhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 1156777888888888888888777765543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.6e-18 Score=163.68 Aligned_cols=267 Identities=12% Similarity=-0.000 Sum_probs=182.1
Q ss_pred hhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 047648 222 VTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLI 301 (537)
Q Consensus 222 ~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 301 (537)
..+..+...+.+ .|++++|+..|+++..... .+..++..+...+.+.|++++|...|+++.+.. +.+..++..+.
T Consensus 66 ~~~~~~~~~~~~---~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 66 PGAFEEGLKRLK---EGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TTHHHHHHHHHH---HTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHH---CCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 335555555555 5555555555555554422 245555556666666666666666666655542 22455566666
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHhHHHH
Q 047648 302 NGLCVDGKLDEAVALRDEMMASGLKPN-----------VVTSNALINGFCKKKLVEKARVLFDDISEQGLS-PSVITYNT 369 (537)
Q Consensus 302 ~~~~~~~~~~~A~~~~~~~~~~~~~~~-----------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 369 (537)
.+|...|++++|+..++++.+.. |+ ...+..+...+...|++++|...++++.+..+. ++..++..
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence 66666666666666666665532 21 223344577788888888888888888876433 15778888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC
Q 047648 370 LIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGK 449 (537)
Q Consensus 370 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 449 (537)
+...|...|++++|...++++.+..+. +..+|..+..+|...|++++|...|+++.+.. +.+..++..+..+|...|+
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 888999999999999999998887544 78889999999999999999999999988864 4557888999999999999
Q ss_pred hHHHHHHHHHHHHchhcCCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047648 450 SKKAVSLLDEMFKMEKEKKWP--------NIVTYNVLIKGFCQKGKLEDANGLLNE 497 (537)
Q Consensus 450 ~~~A~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 497 (537)
+++|...|++++++.+....+ +...|..+..++...|+.+.+..+.++
T Consensus 297 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 297 YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999998876553332 367899999999999999988877665
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-18 Score=165.21 Aligned_cols=264 Identities=10% Similarity=-0.019 Sum_probs=218.5
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047648 258 NEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALIN 337 (537)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 337 (537)
+...+..+...+.+.|++++|..+|+++.+.. +.+..+|..+..++...|++++|+..|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568889999999999999999999998864 3478899999999999999999999999999864 456889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCC---------CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHH
Q 047648 338 GFCKKKLVEKARVLFDDISEQGLSP---------SVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVL-PDVSTYNCLIA 407 (537)
Q Consensus 338 ~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~ 407 (537)
+|...|++++|...++++.+..+.. ....+..+...+...|++++|...++++.+..+. ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 9999999999999999998753220 1222344588899999999999999999987543 26889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCC
Q 047648 408 GLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGK 487 (537)
Q Consensus 408 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 487 (537)
.+...|++++|...++++.+.. +.+..++..+..+|...|++++|++.|+++++.. +.+..+|..+..+|...|+
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ----PGFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCchHHHHHHHHHHHHCCC
Confidence 9999999999999999999875 5678899999999999999999999999998753 3468899999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCC-------------HHhHHHHHHHHHhcCCcCCccCCC
Q 047648 488 LEDANGLLNELLEKGLIPN-------------QTTYQIVREEMMEKGFIPDIEGHM 530 (537)
Q Consensus 488 ~~~A~~~~~~~~~~g~~p~-------------~~~~~~l~~~~~~~g~~~~a~~~l 530 (537)
+++|...++++++.. |+ ...|..+..++...|+.+.+....
T Consensus 297 ~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 350 (365)
T 4eqf_A 297 YREAVSNFLTALSLQ--RKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAAN 350 (365)
T ss_dssp CHHHHHHHHHHHHHH--HCC------------CHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--cccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 999999999998742 32 577889999999999987765443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.1e-17 Score=160.56 Aligned_cols=368 Identities=12% Similarity=-0.015 Sum_probs=250.7
Q ss_pred hHHHHHHHHHHHHHcCCchHHHHHHHHHhhC--------CCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhC-----C
Q 047648 115 NSIIIDMLMLAYVKNMKPHLGFEAFKRAGDY--------GLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRR-----R 181 (537)
Q Consensus 115 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~ 181 (537)
....|+.+...+...|++++|++.|++..+. ..+....+|+.+..++...|++++|...+++..+. +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3578999999999999999999999988653 12334568999999999999999999999887642 1
Q ss_pred --CCCCHHHHHHHHHHHHhc--CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCC
Q 047648 182 --IELNLDSFNFVLNGLCKA--GKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILP 257 (537)
Q Consensus 182 --~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p 257 (537)
......++.....++... +++++|++.|++..+..+. +...+..+..++.+.+..++.++|++.+++..+... .
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-D 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-S
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-c
Confidence 112456676666666554 5799999999999886422 444555555444332225777788999988877532 2
Q ss_pred CHHHHHHHHHHHh----ccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 047648 258 NEVTFNTLIDGFC----KDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSN 333 (537)
Q Consensus 258 ~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 333 (537)
+..++..+...+. ..|++++|.+++++..... +.+...+..+...|...|++++|+..+.++.+.. +.+..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence 5566665554444 3567899999999987764 3467788899999999999999999999998864 34556666
Q ss_pred HHHHHHHhc-------------------CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 047648 334 ALINGFCKK-------------------KLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRG 394 (537)
Q Consensus 334 ~ll~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 394 (537)
.+..+|... +..+.|...+++..+..+. +...+..+...|...|++++|...|++.++..
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~ 364 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKE 364 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 666655432 2356777888887776443 56678889999999999999999999998875
Q ss_pred CCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCC
Q 047648 395 VLPDVS--TYNCLIA-GLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPN 471 (537)
Q Consensus 395 ~~p~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 471 (537)
+.|... .+..+.. .....|+.++|+..|++.++.. |+...... ....+.+++++.++.. +.+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~--~~~~~~~~---------~~~~l~~~~~~~l~~~----p~~ 429 (472)
T 4g1t_A 365 LTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN--QKSREKEK---------MKDKLQKIAKMRLSKN----GAD 429 (472)
T ss_dssp CCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC--CCCHHHHH---------HHHHHHHHHHHHHHHC----C-C
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHH---------HHHHHHHHHHHHHHhC----CCC
Confidence 543321 2333332 2356789999999999998863 44332222 2234455666665432 457
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047648 472 IVTYNVLIKGFCQKGKLEDANGLLNELLEKG 502 (537)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 502 (537)
..+|..+..+|...|++++|++.|++.++.|
T Consensus 430 ~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 430 SEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp TTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 7889999999999999999999999999854
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-16 Score=156.89 Aligned_cols=389 Identities=8% Similarity=-0.057 Sum_probs=256.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHH
Q 047648 58 RASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFE 137 (537)
Q Consensus 58 ~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 137 (537)
+.+....+|+.+..++...|++++|...++..++. +...... ...+....+|..+..+|...|++++|..
T Consensus 46 ~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~---------~~~~~~~-~~~~~~~~~~~nla~~y~~~g~~~~A~~ 115 (472)
T 4g1t_A 46 NREFKATMCNLLAYLKHLKGQNEAALECLRKAEEL---------IQQEHAD-QAEIRSLVTWGNYAWVYYHMGRLSDVQI 115 (472)
T ss_dssp C---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------HHHHSGG-GCTTTTHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------HHhcCcc-ccchHHHHHHHHHHHHHHHcCChHHHHH
Confidence 34455677999999999999999999988876542 1111111 1124456889999999999999999999
Q ss_pred HHHHHhhCC-------CCCChhhHHHHHHHHHhC--CChhHHHHHHHHHHhCCCCCCHHHHHHHHHH---HHhcCChhHH
Q 047648 138 AFKRAGDYG-------LKSSVLSCNQLLRALVKE--GKFEDVEYVYKEMKRRRIELNLDSFNFVLNG---LCKAGKLNKA 205 (537)
Q Consensus 138 ~~~~~~~~~-------~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a 205 (537)
.|+++.+.. ......++.....++.+. +++++|.+.|++..+..+. +...+..+..+ +...++.++|
T Consensus 116 ~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~a 194 (472)
T 4g1t_A 116 YVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNA 194 (472)
T ss_dssp HHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCT
T ss_pred HHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHH
Confidence 999886531 112345566666556554 5699999999999887533 55566555554 4456888999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHhcC-CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 047648 206 SDIMEDMKSLGVSPKVVTYNILIDGYCKK-GGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEE 284 (537)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 284 (537)
++.+++..+... .+..++..+...+... ...++.++|.+.+++...... .+..++..+...|...|++++|...|++
T Consensus 195 l~~~~~al~l~p-~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 272 (472)
T 4g1t_A 195 IDPLRQAIRLNP-DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKK 272 (472)
T ss_dssp HHHHHHHHHHCS-SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhhcCC-cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence 999999887642 2455555555444431 115678899999999887643 3678889999999999999999999999
Q ss_pred HHhCCCCCChhhHHHHHHHHHhC-------------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 047648 285 MGSHGIAAGVVTYNSLINGLCVD-------------------GKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLV 345 (537)
Q Consensus 285 ~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 345 (537)
..+.. +.+..++..+..+|... +.++.|...+++..... +.+..++..+...+...|++
T Consensus 273 al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~ 350 (472)
T 4g1t_A 273 ALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQY 350 (472)
T ss_dssp HHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCH
T ss_pred HHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccH
Confidence 98763 23566666666555322 23567888888887754 44567788899999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHh--HHHHHHH-HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047648 346 EKARVLFDDISEQGLSPSVI--TYNTLID-AYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIM 422 (537)
Q Consensus 346 ~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 422 (537)
++|...|++..+....+... .+..+.. .+...|++++|+..+++.++..+ +..... +....+.+++
T Consensus 351 ~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~--~~~~~~---------~~~~~l~~~~ 419 (472)
T 4g1t_A 351 EEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQ--KSREKE---------KMKDKLQKIA 419 (472)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCC--CCHHHH---------HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--ccHHHH---------HHHHHHHHHH
Confidence 99999999998875443321 2333332 23578999999999999998643 322221 1223455666
Q ss_pred HHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHH
Q 047648 423 NELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTY 475 (537)
Q Consensus 423 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 475 (537)
++.+..+ +.+..+|..+..+|...|++++|++.|++++++.+. .|+..+|
T Consensus 420 ~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~--~p~a~~~ 469 (472)
T 4g1t_A 420 KMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSL--IPSASSW 469 (472)
T ss_dssp HHHHHHC-C-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CCcHhhc
Confidence 6666654 667889999999999999999999999999975433 4555444
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-18 Score=162.32 Aligned_cols=237 Identities=15% Similarity=0.142 Sum_probs=58.0
Q ss_pred cCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 047648 129 NMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDI 208 (537)
Q Consensus 129 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 208 (537)
.|+.++|.++++++. +..+|..++.++.+.|++++|.+.|.+. +|..+|..++..+...|++++|+.+
T Consensus 16 ~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 16 IGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 344555555555441 1124445555555555555555555321 2444455555555555555555554
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 047648 209 MEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSH 288 (537)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 288 (537)
++...+. .+++.+.+.++.+|.+ .|++.++.++++ .|+..+|..+...|...|.+++|..+|..+
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~K---lg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAK---TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp ------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---
T ss_pred HHHHHHh--CccchhHHHHHHHHHH---hCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 4443332 2234444445555555 455544444442 134445555555555555555555555433
Q ss_pred CCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHH
Q 047648 289 GIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYN 368 (537)
Q Consensus 289 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 368 (537)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ...+....
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~ 211 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELE 211 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHH
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHH
Confidence 23455555555555555555555544 13445555555555555555553322221 11222233
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 047648 369 TLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLS 410 (537)
Q Consensus 369 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 410 (537)
.++..|.+.|++++|..+++..+... +.....|+-+...|+
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ 252 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 252 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHH
Confidence 44455555555555555555554433 223444444444444
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-17 Score=154.27 Aligned_cols=159 Identities=12% Similarity=0.030 Sum_probs=125.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047648 339 FCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGV 418 (537)
Q Consensus 339 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 418 (537)
+...|++++|...++++.+..+. +...+..+...+...|++++|...++++.+..+. +..++..+...+...|++++|
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A 225 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEA 225 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHH
Confidence 66677888888888888776443 6777888888888888888888888888876543 677888888888889999999
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCC--------CHHHHHHHHHHHHhcCCHHH
Q 047648 419 RNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWP--------NIVTYNVLIKGFCQKGKLED 490 (537)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~ 490 (537)
...++++.+.. +.+...+..+..++...|++++|.+.++++++..+....+ +..+|..+..++...|++++
T Consensus 226 ~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 304 (327)
T 3cv0_A 226 LDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL 304 (327)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHH
Confidence 99998888764 4567788888899999999999999999888754331111 46788889999999999999
Q ss_pred HHHHHHHHHH
Q 047648 491 ANGLLNELLE 500 (537)
Q Consensus 491 A~~~~~~~~~ 500 (537)
|..++++.++
T Consensus 305 A~~~~~~~l~ 314 (327)
T 3cv0_A 305 VELTYAQNVE 314 (327)
T ss_dssp HHHHTTCCSH
T ss_pred HHHHHHHHHH
Confidence 9988876543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-17 Score=155.40 Aligned_cols=264 Identities=10% Similarity=-0.006 Sum_probs=194.8
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 047648 261 TFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFC 340 (537)
Q Consensus 261 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 340 (537)
.+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+...+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 34455556666666666666666665542 2245556666666666666666666666666543 334556666666666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhHHHHH--------------HH-HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047648 341 KKKLVEKARVLFDDISEQGLSPSVITYNTL--------------ID-AYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCL 405 (537)
Q Consensus 341 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 405 (537)
..|++++|...++++.+..+. +...+..+ .. .+...|++++|...++++.+..+. +..++..+
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l 178 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASL 178 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHH
Confidence 666666666666666654322 22222222 22 377889999999999999987654 78899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhc
Q 047648 406 IAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQK 485 (537)
Q Consensus 406 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 485 (537)
...+...|++++|...++++.+.. +.+..++..+...+...|++++|.+.++++++.. +.+..+|..+..++...
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN----PGYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCHHHHHHHHHHHHHh
Confidence 999999999999999999999875 5568899999999999999999999999998743 34688999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCC-----------CHHhHHHHHHHHHhcCCcCCccCCCCcc
Q 047648 486 GKLEDANGLLNELLEKGLIP-----------NQTTYQIVREEMMEKGFIPDIEGHMYNI 533 (537)
Q Consensus 486 g~~~~A~~~~~~~~~~g~~p-----------~~~~~~~l~~~~~~~g~~~~a~~~l~~~ 533 (537)
|++++|.+.++++.+....+ +...+..+...+.+.|+.++|..+....
T Consensus 254 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred ccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999999843221 3678889999999999999887766544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.78 E-value=2e-14 Score=149.66 Aligned_cols=394 Identities=14% Similarity=0.129 Sum_probs=265.3
Q ss_pred HHhcCCCChHHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHhcCCchHHHHHH------------HHHHHCCCCCChHHH
Q 047648 35 QLFNSDADPVLILRYFCWSTKELR-ASHSLLLTGRLLHSLVVAKKYPKIRSFL------------HMFVKNGKFTSVSTI 101 (537)
Q Consensus 35 ~l~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~l~------------~~~~~~g~~~~~~~~ 101 (537)
..+...+.|..|+..++.+...+. +.....+-+.++....+. +..+...++ ..+...|.+++|..+
T Consensus 993 Kaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~I 1071 (1630)
T 1xi4_A 993 KAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAI 1071 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHH
Confidence 344466788888888888875433 334444555555555444 223333332 234455666666666
Q ss_pred HHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 047648 102 FHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRR 181 (537)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 181 (537)
|+.... +....+.+ +...|++++|.++.++.. +..+|..+..++.+.|++++|...|.+.
T Consensus 1072 YkKa~~-------~~~A~~VL---ie~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA---- 1131 (1630)
T 1xi4_A 1072 FRKFDV-------NTSAVQVL---IEHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA---- 1131 (1630)
T ss_pred HHHcCC-------HHHHHHHH---HHHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc----
Confidence 665431 11222222 226677888888877552 4667888889999999999999888653
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHH
Q 047648 182 IELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVT 261 (537)
Q Consensus 182 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~ 261 (537)
.|...|..++.++.+.|++++|.+.+....+.. ++....+.++.+|++ .+++++.... .. .++...
T Consensus 1132 --dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAK---l~rleele~f----I~---~~n~ad 1197 (1630)
T 1xi4_A 1132 --DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAK---TNRLAELEEF----IN---GPNNAH 1197 (1630)
T ss_pred --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHh---hcCHHHHHHH----Hh---CCCHHH
Confidence 277788888999999999999999998877653 344444458888888 6777653333 22 346667
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 047648 262 FNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCK 341 (537)
Q Consensus 262 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 341 (537)
|..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+++. .+..+|..+..+|..
T Consensus 1198 ~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve 1262 (1630)
T 1xi4_A 1198 IQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVD 1262 (1630)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhh
Confidence 777888888999999999999875 36888889999999999999888876 356788888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--CCHHHHH
Q 047648 342 KKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSRE--GNVEGVR 419 (537)
Q Consensus 342 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--~~~~~a~ 419 (537)
.|++..|......+ ..++..+..++..|.+.|.+++|+.+++..+... +-....|+-+...+++. ++..++.
T Consensus 1263 ~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhl 1336 (1630)
T 1xi4_A 1263 GKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHL 1336 (1630)
T ss_pred hhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHH
Confidence 88888888766543 2356677788899999999999999998887654 22455666666666653 3444555
Q ss_pred HHHHHHHHCCCCC------ChHHHHHHHHHHHhcCChHHHHHHHHHHHHc--------hhcCCCCCHHHHHHHHHHHHhc
Q 047648 420 NIMNELVNNGMRA------GLVTYNILVGALCKDGKSKKAVSLLDEMFKM--------EKEKKWPNIVTYNVLIKGFCQK 485 (537)
Q Consensus 420 ~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~ 485 (537)
++|..-. ++++ +...|..++..|.+.|+++.|....-+-... ..-....|+..|...+..|...
T Consensus 1337 k~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~ 1414 (1630)
T 1xi4_A 1337 ELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF 1414 (1630)
T ss_pred HHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhh
Confidence 5554332 2233 4567888999999999999888332221100 0001244777777777777754
Q ss_pred C
Q 047648 486 G 486 (537)
Q Consensus 486 g 486 (537)
+
T Consensus 1415 ~ 1415 (1630)
T 1xi4_A 1415 K 1415 (1630)
T ss_pred C
Confidence 4
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.78 E-value=8.7e-17 Score=147.05 Aligned_cols=252 Identities=14% Similarity=0.096 Sum_probs=150.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHH
Q 047648 237 IGKMYKADAVFKDMVENGILPNE--VTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAV 314 (537)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 314 (537)
.|++..|+..++..... .|+. .....+.++|...|+++.|+..++. .-+|+..++..+...+...++.++|+
T Consensus 12 ~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp TTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHH
Confidence 46666666665544322 2222 2334455666666666666654433 12345556666666666666677777
Q ss_pred HHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047648 315 ALRDEMMASGLKP-NVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDR 393 (537)
Q Consensus 315 ~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 393 (537)
+.++++...+..| +...+..+...+...|++++|...+++ +.+...+..++..+.+.|++++|.+.++++.+.
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 7776666654333 344555555666666777777766665 235566666666777777777777777776665
Q ss_pred CCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCC
Q 047648 394 GVLPDVST---YNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWP 470 (537)
Q Consensus 394 ~~~p~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 470 (537)
. |+... ....+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|.+.|+++++.. +.
T Consensus 160 ~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~----p~ 232 (291)
T 3mkr_A 160 D--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD----SG 232 (291)
T ss_dssp C--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TT
T ss_pred C--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CC
Confidence 3 22211 1122233334466777777777777653 5566667777777777777777777777776533 33
Q ss_pred CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcCCCCCHHh
Q 047648 471 NIVTYNVLIKGFCQKGKLED-ANGLLNELLEKGLIPNQTT 509 (537)
Q Consensus 471 ~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~g~~p~~~~ 509 (537)
+..++..++..+...|+.++ +.++++++++ +.|+...
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~~ 270 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHPF 270 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCChH
Confidence 56667777777777777654 4566777766 4455443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-16 Score=144.74 Aligned_cols=250 Identities=13% Similarity=0.134 Sum_probs=125.4
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHH
Q 047648 162 VKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMY 241 (537)
Q Consensus 162 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~ 241 (537)
...|+++.|+..++................+.++|...|+++.|+..++.. -+|+..++..+...+.. .++.+
T Consensus 10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~---~~~~~ 82 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLAS---HSRRD 82 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHC---STTHH
T ss_pred HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcC---CCcHH
Confidence 344555555554444332211111123333445555555555555444321 12344444445555555 45555
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 047648 242 KADAVFKDMVENGILP-NEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEM 320 (537)
Q Consensus 242 ~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 320 (537)
+|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+.++++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5555555555444322 333344444555555555555555554 234455555555555666666666666655
Q ss_pred HHcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 047648 321 MASGLKPNVVTS---NALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLP 397 (537)
Q Consensus 321 ~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 397 (537)
.+.. |+.... ..++..+...|++++|..+|+++.+..+ .+...++.+..++.+.|++++|...++++++..+.
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~- 232 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG- 232 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 5542 322111 1122333334566666666666655532 25556666666666666666666666666655433
Q ss_pred CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHC
Q 047648 398 DVSTYNCLIAGLSREGNVEG-VRNIMNELVNN 428 (537)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~ 428 (537)
++.++..++..+...|+.++ +.++++++.+.
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 55566666666666666544 45566666554
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=5.9e-17 Score=151.26 Aligned_cols=380 Identities=11% Similarity=0.052 Sum_probs=172.7
Q ss_pred HHHHhcCCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCC
Q 047648 33 ILQLFNSDADPVLILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSL 112 (537)
Q Consensus 33 ~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~ 112 (537)
+.+|+..-++.+.|..|++.. +.+.+|..++.++.+.|++++|...+..
T Consensus 9 ~~~ll~~~~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfik------------------------ 57 (449)
T 1b89_A 9 VQVLIEHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIK------------------------ 57 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHccCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHc------------------------
Confidence 456666667788899888877 2235899999999999999999887632
Q ss_pred CchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 047648 113 CRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFV 192 (537)
Q Consensus 113 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 192 (537)
.+++..|..++.++...|++++|+..++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+
T Consensus 58 a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~I 128 (449)
T 1b89_A 58 ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQV 128 (449)
T ss_dssp -----------------------------------------------------CHHHHTTTTT-------CC--------
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHH
Confidence 245567888899999999999999988877764 4567788899999999999999988884 3677899999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 047648 193 LNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKD 272 (537)
Q Consensus 193 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 272 (537)
+..|...|++++|..+|..+ ..|..+..++.+ .|++++|.+.++++ .++.+|..++.+|...
T Consensus 129 Gd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~---Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~ 190 (449)
T 1b89_A 129 GDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVH---LGEYQAAVDGARKA------NSTRTWKEVCFACVDG 190 (449)
T ss_dssp --------CTTTHHHHHHHT---------TCHHHHHHHHHT---TTCHHHHHHHHHHH------TCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHH---hccHHHHHHHHHHc------CCchhHHHHHHHHHHc
Confidence 99999999999999999976 479999999999 99999999999987 2789999999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CCHHHHHH
Q 047648 273 ENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKK--KLVEKARV 350 (537)
Q Consensus 273 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--~~~~~a~~ 350 (537)
|+++.|......+ ...+.-...++..|.+.|++++|+.+++...... +.....|+.+.-+|++- ++..+..+
T Consensus 191 ~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~ 264 (449)
T 1b89_A 191 KEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLE 264 (449)
T ss_dssp TCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999996655442 2344445578899999999999999999988765 55667777777777764 34444444
Q ss_pred HHHHHHHcCCCC------CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047648 351 LFDDISEQGLSP------SVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNE 424 (537)
Q Consensus 351 ~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 424 (537)
.|..- .+++| +...|..++-.|...++++.|.. .|.++. |+..--..+.....+..+.+--.+...-
T Consensus 265 ~~~~~--ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~---tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~f 337 (449)
T 1b89_A 265 LFWSR--VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII---TMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQF 337 (449)
T ss_dssp HHSTT--SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH---HHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHH
T ss_pred HHHHH--hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH---HHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHH
Confidence 44321 12222 46678889999999999998886 444441 1222222333333455554444333333
Q ss_pred HHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHH-------------HHHchhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047648 425 LVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDE-------------MFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDA 491 (537)
Q Consensus 425 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 491 (537)
.++. .| ...+.|+.++...=|..++.++|++ +.. ..+..+-.++-..|....+++.-
T Consensus 338 yl~~--~p--~~l~~ll~~l~~~ld~~r~v~~~~~~~~l~l~~~yl~~v~~------~n~~~vnealn~l~ieeed~~~l 407 (449)
T 1b89_A 338 YLEF--KP--LLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQN------HNNKSVNESLNNLFITEEDYQAL 407 (449)
T ss_dssp HHHH--CG--GGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHT------TCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhc--CH--HHHHHHHHHHHhccCcHHHHHHHHHcCCcHHHHHHHHHHHH------hhHHHHHHHHHHHHHhhhhHHHH
Confidence 3322 22 2345555555444455555555443 321 12333444555566666666554
Q ss_pred HH
Q 047648 492 NG 493 (537)
Q Consensus 492 ~~ 493 (537)
..
T Consensus 408 r~ 409 (449)
T 1b89_A 408 RT 409 (449)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-14 Score=151.59 Aligned_cols=355 Identities=11% Similarity=0.124 Sum_probs=210.7
Q ss_pred hHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCC--CCChhhHHHHHH---------------------------HHHhCC
Q 047648 115 NSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGL--KSSVLSCNQLLR---------------------------ALVKEG 165 (537)
Q Consensus 115 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~---------------------------~~~~~~ 165 (537)
++.--...+++|...|.+.+|++++++..-.+- ..+....+.++. .+...|
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lg 1063 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNE 1063 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCC
Confidence 334445566777777777777777777763211 122334444443 444455
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHH
Q 047648 166 KFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADA 245 (537)
Q Consensus 166 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~ 245 (537)
.+++|..+|++... .....+.++. ..|++++|.++.++. -+..+|..+..++.. .|++++|++
T Consensus 1064 lyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~---~G~~kEAId 1126 (1630)
T 1xi4_A 1064 LFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQ---KGMVKEAID 1126 (1630)
T ss_pred CHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHh---CCCHHHHHH
Confidence 55555555555320 1111222221 445556665555543 135566666666666 666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 047648 246 VFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGL 325 (537)
Q Consensus 246 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 325 (537)
.|.+. -|...|..++..+.+.|++++|.+.|....+.. +++...+.++.+|++.+++++...+ .+
T Consensus 1127 sYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~--- 1191 (1630)
T 1xi4_A 1127 SYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN--- 1191 (1630)
T ss_pred HHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh---
Confidence 66442 255566666666666677777776666655543 2222233466666666666643222 11
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047648 326 KPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCL 405 (537)
Q Consensus 326 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 405 (537)
.++...+..+...|...|++++|..+|... ..|..++.+|.+.|++++|.+.+++.. +..+|..+
T Consensus 1192 ~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev 1256 (1630)
T 1xi4_A 1192 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEV 1256 (1630)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHH
Confidence 234455556666677777777777777664 256667777777777777777766652 45666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhc
Q 047648 406 IAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQK 485 (537)
Q Consensus 406 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 485 (537)
..+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++..+.++ +-....|+-+...|.+.
T Consensus 1257 ~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le----raH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1257 CFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE----RAHMGMFTELAILYSKF 1327 (1630)
T ss_pred HHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC----hhHhHHHHHHHHHHHhC
Confidence 6777777777666665543 23355566788888888888888888888887543 23555666666666653
Q ss_pred --CCHHHHHHHHHHHHHcCCCC------CHHhHHHHHHHHHhcCCcCCcc
Q 047648 486 --GKLEDANGLLNELLEKGLIP------NQTTYQIVREEMMEKGFIPDIE 527 (537)
Q Consensus 486 --g~~~~A~~~~~~~~~~g~~p------~~~~~~~l~~~~~~~g~~~~a~ 527 (537)
++..++.+.|..-.. +.| +...|..++-.|.+.|.++.|.
T Consensus 1328 ~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1328 KPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred CHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 345555555543322 333 4567888888888888888775
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-15 Score=136.49 Aligned_cols=226 Identities=10% Similarity=0.039 Sum_probs=177.6
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CCC----HHHH
Q 047648 259 EVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGL--KPN----VVTS 332 (537)
Q Consensus 259 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~----~~~~ 332 (537)
...+..+...+...|++++|...|+++.+.. .+...+..+..++...|++++|++.+.++.+... .++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4566777777888888888888888877765 5777788888888888888888888888776421 111 4677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 047648 333 NALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSRE 412 (537)
Q Consensus 333 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 412 (537)
..+...+...|++++|...|+++.+.. |+ ...+...|++++|...++++....+. +...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHh
Confidence 888888888888888888888887753 33 23466677888899988888876433 566788888888899
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047648 413 GNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDAN 492 (537)
Q Consensus 413 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 492 (537)
|++++|...++++.+.. +.+..++..+..++...|++++|.+.++++++.. +.+...|..+..++...|++++|.
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----~~~~~~~~~l~~~~~~~g~~~~A~ 227 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD----PNFVRAYIRKATAQIAVKEYASAL 227 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----HHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999888865 5567888889999999999999999999988643 346788888899999999999999
Q ss_pred HHHHHHHHc
Q 047648 493 GLLNELLEK 501 (537)
Q Consensus 493 ~~~~~~~~~ 501 (537)
..+++..+.
T Consensus 228 ~~~~~a~~~ 236 (258)
T 3uq3_A 228 ETLDAARTK 236 (258)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988873
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-17 Score=167.36 Aligned_cols=150 Identities=13% Similarity=0.107 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHhh---CCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 047648 116 SIIIDMLMLAYVKNMKPHLGFEAFKRAGD---YGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFV 192 (537)
Q Consensus 116 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 192 (537)
..+|+++|.+|++.|++++|.++|++|.+ .|+.||+.+||+||.+|++.|++++|.++|++|.+.|+.||..|||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 47899999999999999999999988764 478999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCh-hHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCC------HHHHHHH
Q 047648 193 LNGLCKAGKL-NKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPN------EVTFNTL 265 (537)
Q Consensus 193 ~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~------~~~~~~l 265 (537)
|.++++.|+. ++|.++|++|.+.|+.||..+|+.++....+ +.+++.++++ ..++.|+ ..+...|
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR-------~~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL 278 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR-------ATVLKAVHKV-KPTFSLPPQLPPPVNTSKLL 278 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH-------HHHHHHHGGG-CCCCCCCCCCCCCCCCCTTT
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH-------HHHHHHHHHh-CcccCCCCCCcccccchHHH
Confidence 9999999985 7899999999999999999999998876655 2455555555 3345444 4555667
Q ss_pred HHHHhccC
Q 047648 266 IDGFCKDE 273 (537)
Q Consensus 266 ~~~~~~~g 273 (537)
.+.|.+.+
T Consensus 279 ~dl~s~d~ 286 (1134)
T 3spa_A 279 RDVYAKDG 286 (1134)
T ss_dssp HHHHCCCS
T ss_pred HHHHccCC
Confidence 77777655
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.2e-15 Score=131.55 Aligned_cols=197 Identities=14% Similarity=0.011 Sum_probs=101.5
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 047648 293 GVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLID 372 (537)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 372 (537)
+...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...+++..+..+. +...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 34444445555555555555555555554432 233444555555555555555555555555544322 3444455555
Q ss_pred HHHhc-----------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHH
Q 047648 373 AYCKE-----------GRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILV 441 (537)
Q Consensus 373 ~~~~~-----------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 441 (537)
++... |++++|...+++.++..+. +...+..+..++...|++++|+..|++.++.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 55555 6666666666666655433 45556666666666666666666666666654 4555666666
Q ss_pred HHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047648 442 GALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNEL 498 (537)
Q Consensus 442 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 498 (537)
.+|...|++++|+..|+++++.. +.+...+..+..++...|++++|...+++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~----P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQA----PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 66666666666666666665432 234555666666666666666666666554
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-14 Score=132.09 Aligned_cols=246 Identities=11% Similarity=0.028 Sum_probs=192.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHH
Q 047648 260 VTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPN--VVTSNALIN 337 (537)
Q Consensus 260 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~ 337 (537)
..+......+...|++++|+..|+++.+.. +.+...+..+..++...|++++|++.++++.+.+..++ ...|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 345566777888899999999999888764 23556788888889999999999999999887431121 334788888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 047648 338 GFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEG 417 (537)
Q Consensus 338 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 417 (537)
.+...|++++|...|++..+..+. +..++..+..+|...|++++|...+++..+..+. +...+..+...+...+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998887544 6678889999999999999999999999887544 67778777734445569999
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC---hHHHHHHHHHHHHchhcCCCC----CHHHHHHHHHHHHhcCCHHH
Q 047648 418 VRNIMNELVNNGMRAGLVTYNILVGALCKDGK---SKKAVSLLDEMFKMEKEKKWP----NIVTYNVLIKGFCQKGKLED 490 (537)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~ 490 (537)
|...|+++.+.. +.+...+..+..++...|+ +++|...++++++.......+ -..+|..+...|...|++++
T Consensus 161 A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 161 ADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 999999999874 4457788888888888888 888999999998754332111 13678889999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHhHH
Q 047648 491 ANGLLNELLEKGLIPNQTTYQ 511 (537)
Q Consensus 491 A~~~~~~~~~~g~~p~~~~~~ 511 (537)
|...++++++ +.|+.....
T Consensus 240 A~~~~~~al~--~~p~~~~a~ 258 (272)
T 3u4t_A 240 ADAAWKNILA--LDPTNKKAI 258 (272)
T ss_dssp HHHHHHHHHH--HCTTCHHHH
T ss_pred HHHHHHHHHh--cCccHHHHH
Confidence 9999999998 457654433
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=3e-17 Score=165.44 Aligned_cols=151 Identities=14% Similarity=0.207 Sum_probs=112.4
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHH
Q 047648 150 SVLSCNQLLRALVKEGKFEDVEYVYKEMKR---RRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNI 226 (537)
Q Consensus 150 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 226 (537)
-..+||++|.+|++.|++++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 345788888888888888888888877654 47888888888888888888888888888888888888888888888
Q ss_pred HHHHHhcCCCCCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC------hhhHHH
Q 047648 227 LIDGYCKKGGIGK-MYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAG------VVTYNS 299 (537)
Q Consensus 227 ll~~~~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~ 299 (537)
+|.++++ .|+ .++|.++|++|.+.|+.||..+|+.++....+. .+++..+++ ..+..|+ ..+...
T Consensus 206 LI~glcK---~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~L 277 (1134)
T 3spa_A 206 ALQCMGR---QDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKL 277 (1134)
T ss_dssp HHHHHHH---HTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTT
T ss_pred HHHHHHh---CCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHH
Confidence 8888888 676 467888888888888888888888887655443 333333333 2233333 344445
Q ss_pred HHHHHHhCC
Q 047648 300 LINGLCVDG 308 (537)
Q Consensus 300 l~~~~~~~~ 308 (537)
|.+.|.+.+
T Consensus 278 L~dl~s~d~ 286 (1134)
T 3spa_A 278 LRDVYAKDG 286 (1134)
T ss_dssp THHHHCCCS
T ss_pred HHHHHccCC
Confidence 555555554
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-14 Score=131.09 Aligned_cols=213 Identities=12% Similarity=0.055 Sum_probs=131.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC--CC----hhhHHHHHHHHHhCCCH
Q 047648 237 IGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIA--AG----VVTYNSLINGLCVDGKL 310 (537)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~ 310 (537)
.|++++|+..+++..+.. .+..++..+...+...|++++|...++++.+.... ++ ...+..+...+...|++
T Consensus 18 ~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 95 (258)
T 3uq3_A 18 ARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDL 95 (258)
T ss_dssp TTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred hccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccH
Confidence 444444444444444433 34444444444444444444444444444332100 01 34555555566666666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 047648 311 DEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSM 390 (537)
Q Consensus 311 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 390 (537)
++|+..++++.... |+. ..+...|++++|...++.+....+. +...+..+...+...|++++|...++++
T Consensus 96 ~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a 165 (258)
T 3uq3_A 96 KKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKSDWPNAVKAYTEM 165 (258)
T ss_dssp HHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 66666666665532 332 2344556677777777776665322 4556667777777788888888888877
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047648 391 LDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKM 463 (537)
Q Consensus 391 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 463 (537)
.+..+. +..++..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|.+.++++++.
T Consensus 166 ~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 166 IKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 766544 67777778888888888888888888887764 455677788888888888888888888887764
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.6e-15 Score=129.01 Aligned_cols=199 Identities=14% Similarity=0.007 Sum_probs=149.7
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 047648 256 LPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNAL 335 (537)
Q Consensus 256 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 335 (537)
+++...+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|+..+++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 3466677778888888888888888888887764 3367777788888888888888888888888764 4456777788
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 047648 336 INGFCKK-----------KLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNC 404 (537)
Q Consensus 336 l~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 404 (537)
..++... |++++|...+++..+..+. +...+..+..++...|++++|+..+++.++.. .++..+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 8888888 8999999999988887544 67788888889999999999999999988877 58888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 047648 405 LIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEM 460 (537)
Q Consensus 405 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 460 (537)
+..++...|++++|+..|++..+.. |.+...+..+..++...|++++|++.|++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999988864 556788888889999999999999888876
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.68 E-value=2e-14 Score=140.21 Aligned_cols=346 Identities=11% Similarity=0.023 Sum_probs=206.2
Q ss_pred HHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCCh---hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047648 122 LMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKF---EDVEYVYKEMKRRRIELNLDSFNFVLNGLCK 198 (537)
Q Consensus 122 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 198 (537)
+...+.+.|++++|+++|++..+.| +..++..+...+...|+. ++|...|++..+. +...+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 5666777888888888888887765 334445556666667776 7888888777654 44555566664545
Q ss_pred cC-----ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 047648 199 AG-----KLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDE 273 (537)
Q Consensus 199 ~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 273 (537)
.| ++++|...|++..+.| +...+..+...|...+....-.++.+.+......| +......+...|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 44 6778888888887765 23356666666665222122234555555555544 3445566666666666
Q ss_pred CHH----HHHHHHHHHHhCCCCCChhhHHHHHHHHHhCC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----
Q 047648 274 NIS----AAMKVFEEMGSHGIAAGVVTYNSLINGLCVDG---KLDEAVALRDEMMASGLKPNVVTSNALINGFCKK---- 342 (537)
Q Consensus 274 ~~~----~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---- 342 (537)
.++ .+..+++..... ++..+..+...|...| ++++|++.|++..+.| +++...+..+...|...
T Consensus 156 ~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~ 230 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGT 230 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSS
T ss_pred CcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCC
Confidence 443 344444443332 3347777777777788 7888888888887776 45555555666666554
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH-H--HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----C
Q 047648 343 KLVEKARVLFDDISEQGLSPSVITYNTLIDA-Y--CKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREG-----N 414 (537)
Q Consensus 343 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-----~ 414 (537)
+++++|...|++.. .| ++..+..+... + ...+++++|...|++..+.| ++..+..+...|. .| +
T Consensus 231 ~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d 302 (452)
T 3e4b_A 231 PDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPAD 302 (452)
T ss_dssp CCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCC
T ss_pred CCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCC
Confidence 67888888888876 32 45566666665 3 45778888888888888765 5666677777666 44 7
Q ss_pred HHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh----cCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHh----cC
Q 047648 415 VEGVRNIMNELVNNGMRAGLVTYNILVGALCK----DGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQ----KG 486 (537)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 486 (537)
+++|...|++.. . .+...+..|...|.. ..++++|...|+++.+ . -+......|...|.. ..
T Consensus 303 ~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~---~---g~~~A~~~Lg~~y~~G~g~~~ 372 (452)
T 3e4b_A 303 AKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR---N---GQNSADFAIAQLFSQGKGTKP 372 (452)
T ss_dssp HHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT---T---TCTTHHHHHHHHHHSCTTBCC
T ss_pred HHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh---h---ChHHHHHHHHHHHHhCCCCCC
Confidence 888888888776 3 355666777766665 3478888888888764 1 133445566666653 45
Q ss_pred CHHHHHHHHHHHHHcCC
Q 047648 487 KLEDANGLLNELLEKGL 503 (537)
Q Consensus 487 ~~~~A~~~~~~~~~~g~ 503 (537)
++++|...|+...+.|.
T Consensus 373 d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 373 DPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp CHHHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHHHHCCC
Confidence 77888888888777663
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.67 E-value=5.7e-14 Score=125.91 Aligned_cols=211 Identities=13% Similarity=0.014 Sum_probs=155.2
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 047648 294 VVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDA 373 (537)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 373 (537)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 3455666667777777777777777776653 345667777777777778888888877777766433 56677777888
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHH
Q 047648 374 YCKEGRMEDAFAMRNSMLDRGVLP-DVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKK 452 (537)
Q Consensus 374 ~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 452 (537)
|...|++++|.+.++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 888888888888888887732233 45677777888888888888888888887764 4457778888888888888888
Q ss_pred HHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 047648 453 AVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIV 513 (537)
Q Consensus 453 A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 513 (537)
|...++++++.. +.+...+..+...+...|++++|.+.++++.+. .|+...+..+
T Consensus 194 A~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~ 248 (252)
T 2ho1_A 194 ARQYYDLFAQGG----GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEYQEF 248 (252)
T ss_dssp HHHHHHHHHTTS----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHHHHH
T ss_pred HHHHHHHHHHhC----cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHHHHH
Confidence 888888887522 456777888888888888888888888888884 4665554443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=4.4e-13 Score=121.70 Aligned_cols=224 Identities=11% Similarity=-0.024 Sum_probs=178.4
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 047648 258 NEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCV----DGKLDEAVALRDEMMASGLKPNVVTSN 333 (537)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~ 333 (537)
+..++..+...+...|++++|...|++..+. .+...+..+...|.. .+++++|+..|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5566777777788888888888888887773 355677777778888 888888888888888764 667777
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 047648 334 ALINGFCK----KKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCK----EGRMEDAFAMRNSMLDRGVLPDVSTYNCL 405 (537)
Q Consensus 334 ~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 405 (537)
.+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 78888888 888888888888887764 66777888888888 888888888888888865 56677777
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh----cCChHHHHHHHHHHHHchhcCCCCCHHHHHH
Q 047648 406 IAGLSR----EGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCK----DGKSKKAVSLLDEMFKMEKEKKWPNIVTYNV 477 (537)
Q Consensus 406 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 477 (537)
...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|++.|+++.+. .+...+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~------~~~~a~~~ 223 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL------ENGGGCFN 223 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT------TCHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC------CCHHHHHH
Confidence 778877 888899999988888764 45677788888888 88999999999888762 23667778
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHcC
Q 047648 478 LIKGFCQ----KGKLEDANGLLNELLEKG 502 (537)
Q Consensus 478 l~~~~~~----~g~~~~A~~~~~~~~~~g 502 (537)
+...|.. .+++++|.+.+++..+.|
T Consensus 224 l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 224 LGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8888888 889999999999988865
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.3e-14 Score=139.75 Aligned_cols=375 Identities=13% Similarity=0.045 Sum_probs=247.2
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCc---hHHHHHHHHHhh
Q 047648 68 RLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKP---HLGFEAFKRAGD 144 (537)
Q Consensus 68 ~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~ 144 (537)
.+...+.+.|++++|..+++...+.|+. ..+..+...|...|++ ++|++.|++..+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~~---------------------~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~ 66 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGYS---------------------EAQVGLADIQVGTRDPAQIKQAEATYRAAAD 66 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCC---------------------TGGGTCC------------------------
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCH---------------------HHHHHHHHHHHccCCCCCHHHHHHHHHHHHh
Confidence 3667777888999999999888776532 2223355556667777 999999999986
Q ss_pred CCCCCChhhHHHHHHHHHhCC-----ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh---HHHHHHHHHHhCC
Q 047648 145 YGLKSSVLSCNQLLRALVKEG-----KFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLN---KASDIMEDMKSLG 216 (537)
Q Consensus 145 ~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~ 216 (537)
. +...+..+...+...+ ++++|...|++..+.|.. ..+..+...|...+..+ ++.+.+......|
T Consensus 67 ~----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g 139 (452)
T 3e4b_A 67 T----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG 139 (452)
T ss_dssp --------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT
T ss_pred C----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC
Confidence 3 6667777777666665 778999999999987643 26677777777766544 4555555555544
Q ss_pred CCCChhhHHHHHHHHhcCCCCC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHHHhCC
Q 047648 217 VSPKVVTYNILIDGYCKKGGIG----KMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDE---NISAAMKVFEEMGSHG 289 (537)
Q Consensus 217 ~~~~~~~~~~ll~~~~~~~~~~----~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~ 289 (537)
+...+..+...|.. .+ ..+++..+++..... +...+..+...|.+.| +.++|+..|++..+.|
T Consensus 140 ---~~~a~~~Lg~~y~~---~~~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g 209 (452)
T 3e4b_A 140 ---YPEAGLAQVLLYRT---QGTYDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG 209 (452)
T ss_dssp ---CTTHHHHHHHHHHH---HTCGGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT
T ss_pred ---CHHHHHHHHHHHHc---CCCcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC
Confidence 45566667777766 44 344444444443332 3448888888999999 9999999999999886
Q ss_pred CCCChhhHHHHHHHHHhC----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCCC
Q 047648 290 IAAGVVTYNSLINGLCVD----GKLDEAVALRDEMMASGLKPNVVTSNALING-F--CKKKLVEKARVLFDDISEQGLSP 362 (537)
Q Consensus 290 ~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~ 362 (537)
. ++...+..+...|... +++++|++.|++.. . .+...+..+... + ...+++++|...|++..+.|
T Consensus 210 ~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--- 281 (452)
T 3e4b_A 210 T-VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--- 281 (452)
T ss_dssp C-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---
T ss_pred C-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---
Confidence 3 3555556677777554 79999999999988 3 355666666666 4 46899999999999998876
Q ss_pred CHhHHHHHHHHHHhcC-----ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCC
Q 047648 363 SVITYNTLIDAYCKEG-----RMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSR----EGNVEGVRNIMNELVNNGMRAG 433 (537)
Q Consensus 363 ~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 433 (537)
+...+..+...|. .| ++++|...|++.. .| ++..+..+...|.. ..+.++|...|++..+.| +
T Consensus 282 ~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~ 353 (452)
T 3e4b_A 282 QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---Q 353 (452)
T ss_dssp CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---C
T ss_pred CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---h
Confidence 6777788888887 55 9999999999988 33 67778888877776 459999999999999876 3
Q ss_pred hHHHHHHHHHHHh----cCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 434 LVTYNILVGALCK----DGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 434 ~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
......|..+|.. ..++++|..+|+.+.+ .| .++.......+......++..+|..+.++..+
T Consensus 354 ~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~---~g-~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 354 NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA---QD-TPEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT---TC-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH---CC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4556677777764 5689999999999975 22 22332222222222334456677777776654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-13 Score=121.29 Aligned_cols=213 Identities=13% Similarity=-0.018 Sum_probs=157.4
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 047648 293 GVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLID 372 (537)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 372 (537)
+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 34556666777777777777777777776653 345667777777777778888888888777765433 5667777888
Q ss_pred HHHhc-CChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCh
Q 047648 373 AYCKE-GRMEDAFAMRNSMLDRGVLP-DVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKS 450 (537)
Q Consensus 373 ~~~~~-g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 450 (537)
.+... |++++|...++++.+.+..| +...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 88888 88888888888887732222 35677788888888888888888888888764 44577888888888889999
Q ss_pred HHHHHHHHHHHHchhcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 047648 451 KKAVSLLDEMFKMEKEKKW-PNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVR 514 (537)
Q Consensus 451 ~~A~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 514 (537)
++|.+.++++++.. + .+...+..+...+...|+.++|..+++.+.+ ..|+......++
T Consensus 164 ~~A~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l 222 (225)
T 2vq2_A 164 GDADYYFKKYQSRV----EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA--NFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHHH----CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhC----CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHHh
Confidence 99999998887643 3 4666777777888888999999988888877 346665554443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=6.8e-15 Score=133.83 Aligned_cols=246 Identities=10% Similarity=-0.071 Sum_probs=113.9
Q ss_pred CCHHHHHHHHHHHHhCCC---CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047648 273 ENISAAMKVFEEMGSHGI---AAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKAR 349 (537)
Q Consensus 273 g~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 349 (537)
|++++|+..|+++.+... +.+...+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 444555555554444311 0123344444455555555555555555554432 223445555555555555555555
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047648 350 VLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNG 429 (537)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 429 (537)
..|+++.+..+. +...+..+..+|...|++++|...++++.+..+ +.......+..+...|++++|...+++.....
T Consensus 98 ~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP--NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 555555544222 344555555555555555555555555554322 22222222233344455556666555554432
Q ss_pred CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHh
Q 047648 430 MRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTT 509 (537)
Q Consensus 430 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 509 (537)
+++...+ .++..+...++.++|.+.++++++..+...+.+..+|..+..+|...|++++|...++++++ ..|+.
T Consensus 175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~-- 248 (275)
T 1xnf_A 175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVHN-- 248 (275)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCTT--
T ss_pred -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCchh--
Confidence 2222222 24444555555555665555554321110001135555666666666666666666666665 23422
Q ss_pred HHHHHHHHHhcCCcCCccC
Q 047648 510 YQIVREEMMEKGFIPDIEG 528 (537)
Q Consensus 510 ~~~l~~~~~~~g~~~~a~~ 528 (537)
+.....++...|++++|..
T Consensus 249 ~~~~~~~~~~l~~~~~a~~ 267 (275)
T 1xnf_A 249 FVEHRYALLELSLLGQDQD 267 (275)
T ss_dssp CHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHhhHH
Confidence 1122334444455555443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.65 E-value=7.1e-14 Score=126.85 Aligned_cols=245 Identities=11% Similarity=-0.012 Sum_probs=137.1
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHH
Q 047648 226 ILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAG--VVTYNSLING 303 (537)
Q Consensus 226 ~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~ 303 (537)
.....+.. .|++++|+..+++..+.... +...+..+...+...|++++|+..++++.+....++ ...|..+...
T Consensus 8 ~~a~~~~~---~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 8 RYADFLFK---NNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp HHHHHHHT---TTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHH---hcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 33444444 55555555555555544221 333555555555556666666666665555221111 1225555666
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHH
Q 047648 304 LCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDA 383 (537)
Q Consensus 304 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 383 (537)
+...|++++|++.++++.+.. +.+..++..+...+...|++++|...+++..+..+. +...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666665543 234456666666666666666666666666554322 455555555233333477777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC------hHHHHHHHHHHHhcCChHHH
Q 047648 384 FAMRNSMLDRGVLPDVSTYNCLIAGLSREGN---VEGVRNIMNELVNNG-MRAG------LVTYNILVGALCKDGKSKKA 453 (537)
Q Consensus 384 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~A 453 (537)
...++++.+..+. +...+..+..++...|+ +++|...++++.+.. -.|+ ..+|..+...|...|++++|
T Consensus 162 ~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 7777777665433 45566666666666666 666777766666541 1122 24666777777778888888
Q ss_pred HHHHHHHHHchhcCCCCCHHHHHHHHHH
Q 047648 454 VSLLDEMFKMEKEKKWPNIVTYNVLIKG 481 (537)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 481 (537)
.+.|++++++. +.+...+..+...
T Consensus 241 ~~~~~~al~~~----p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 241 DAAWKNILALD----PTNKKAIDGLKMK 264 (272)
T ss_dssp HHHHHHHHHHC----TTCHHHHHHHC--
T ss_pred HHHHHHHHhcC----ccHHHHHHHhhhh
Confidence 88888877643 2344454444433
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.64 E-value=6.8e-14 Score=132.21 Aligned_cols=249 Identities=14% Similarity=0.050 Sum_probs=194.7
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047648 259 EVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGK-LDEAVALRDEMMASGLKPNVVTSNALIN 337 (537)
Q Consensus 259 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 337 (537)
...|..+...+.+.|++++|+..|++++... +-+...|..+..++...|+ +++|+..|++++... +-+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 4567777778888888999999998888754 2367778888888888886 999999999888864 446778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHH
Q 047648 338 GFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSR-EGNVE 416 (537)
Q Consensus 338 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~ 416 (537)
++...|++++|+..|+++.+..+. +...|..+..++.+.|++++|+..++++++..+. +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 888899999999999998887655 7788888888999999999999999999887666 78888888888888 55557
Q ss_pred HH-----HHHHHHHHHCCCCCChHHHHHHHHHHHhcC--ChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcC---
Q 047648 417 GV-----RNIMNELVNNGMRAGLVTYNILVGALCKDG--KSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKG--- 486 (537)
Q Consensus 417 ~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--- 486 (537)
+| +..+++.++.. +-+...|..+..++...| ++++|++.++++ +. .+.+...+..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~----~p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP----SHSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT----TCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc----CCCCHHHHHHHHHHHHHHhccc
Confidence 77 47888888764 456778888888888888 688888888776 32 2456788888888888864
Q ss_pred ------CHHHHHHHHHHH-HHcCCCCCHH-hHHHHHHHHHh
Q 047648 487 ------KLEDANGLLNEL-LEKGLIPNQT-TYQIVREEMME 519 (537)
Q Consensus 487 ------~~~~A~~~~~~~-~~~g~~p~~~-~~~~l~~~~~~ 519 (537)
..++|+++++++ .+ +.|... .|..+...+..
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAKE--KDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHH
Confidence 258899999998 66 567654 45444444443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=3.5e-14 Score=126.48 Aligned_cols=200 Identities=14% Similarity=0.091 Sum_probs=120.5
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 047648 294 VVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDA 373 (537)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 373 (537)
...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHH
Confidence 3445555555566666666666666665532 334555666666666666666666666666555332 55566666666
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHH
Q 047648 374 YCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKA 453 (537)
Q Consensus 374 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 453 (537)
+...|++++|...++++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777776665433 56666677777777777777777777776653 44566777777777777777777
Q ss_pred HHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 454 VSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEK 501 (537)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (537)
.+.++++++.. +.+..++..+..+|...|++++|...++++.+.
T Consensus 179 ~~~~~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 179 LSQFAAVTEQD----PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC----cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 77777776532 335667777777777778888888887777773
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1e-11 Score=125.25 Aligned_cols=445 Identities=10% Similarity=0.053 Sum_probs=303.3
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHH
Q 047648 46 ILRYFCWSTKELRASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLA 125 (537)
Q Consensus 46 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 125 (537)
....|+..+.. .|.+..+|..++..+.+.+.++.+..+++.++.. +|.....|...+..
T Consensus 51 ~i~~lE~~l~~--np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-------------------fP~~~~lW~~Yi~~ 109 (679)
T 4e6h_A 51 VIGKLNDMIEE--QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-------------------FPLMANIWCMRLSL 109 (679)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH--CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-------------------CCCCHHHHHHHHHH
Confidence 45555666665 6789999999999998888888888888877765 35666788888888
Q ss_pred HHHcCC---chHHHHHHHHHhhCCC-CCChhhHHHHHHHHHhCCCh--------hHHHHHHHHHHh-CCC-CC-CHHHHH
Q 047648 126 YVKNMK---PHLGFEAFKRAGDYGL-KSSVLSCNQLLRALVKEGKF--------EDVEYVYKEMKR-RRI-EL-NLDSFN 190 (537)
Q Consensus 126 ~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~ 190 (537)
-.+.|+ ++.+.++|++.+...+ +|++..|...+....+.++. +.+.++|+.... .|. .+ +...|.
T Consensus 110 E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~ 189 (679)
T 4e6h_A 110 EFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWN 189 (679)
T ss_dssp HHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred HHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHH
Confidence 888888 9999999999998631 37888999888877666554 334577777554 455 44 456788
Q ss_pred HHHHHHH---------hcCChhHHHHHHHHHHhCCCCCChhhHHH---HHHHHhcCC-------CCCCHHHHHHHHHHHH
Q 047648 191 FVLNGLC---------KAGKLNKASDIMEDMKSLGVSPKVVTYNI---LIDGYCKKG-------GIGKMYKADAVFKDMV 251 (537)
Q Consensus 191 ~l~~~~~---------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---ll~~~~~~~-------~~~~~~~a~~~~~~~~ 251 (537)
..+.... ..++++.+..+|++.+......-..+|.. +...+.... ....++.|...+.++.
T Consensus 190 ~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~ 269 (679)
T 4e6h_A 190 EYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWL 269 (679)
T ss_dssp HHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHH
Confidence 7776543 23457889999999886422212233322 222110000 0112333444444432
Q ss_pred H--CCC----C-----------C--C------HHHHHHHHHHHhccC-------CHHHHHHHHHHHHhCCCCCChhhHHH
Q 047648 252 E--NGI----L-----------P--N------EVTFNTLIDGFCKDE-------NISAAMKVFEEMGSHGIAAGVVTYNS 299 (537)
Q Consensus 252 ~--~~~----~-----------p--~------~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~ 299 (537)
. .++ + | + ...|...+..--..+ ..+.+..+|+++... .+-....|..
T Consensus 270 ~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ 348 (679)
T 4e6h_A 270 NITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFN 348 (679)
T ss_dssp HHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHH
T ss_pred HHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHH
Confidence 2 111 1 1 0 134444444333322 134456778888765 3447788888
Q ss_pred HHHHHHhCCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------CC-------
Q 047648 300 LINGLCVDGKLDEAV-ALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGL---------SP------- 362 (537)
Q Consensus 300 l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---------~~------- 362 (537)
.+..+...|+.++|. ++|++.... ++.+...+...+....+.|+++.|..+|+++.+... .|
T Consensus 349 ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~ 427 (679)
T 4e6h_A 349 MANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAIN 427 (679)
T ss_dssp HHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhh
Confidence 888888899999997 999999875 355666778888889999999999999999876410 12
Q ss_pred -----CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCChHH
Q 047648 363 -----SVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSRE-GNVEGVRNIMNELVNNGMRAGLVT 436 (537)
Q Consensus 363 -----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~ 436 (537)
...+|...+....+.|..+.|..+|.+..+....+....|...+..-.+. ++.+.|..+|+..++. ++.+...
T Consensus 428 ~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~ 506 (679)
T 4e6h_A 428 QLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEY 506 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHH
T ss_pred hhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHH
Confidence 13367788888888999999999999998861112334444333333344 4589999999999987 4556777
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 047648 437 YNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREE 516 (537)
Q Consensus 437 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~ 516 (537)
+...++.....|+.+.|+.+|++++...+. .......|...+..-.+.|+.+.+.++.+++.+. .|+......+.+-
T Consensus 507 w~~y~~fe~~~~~~~~AR~lferal~~~~~-~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~r 583 (679)
T 4e6h_A 507 INKYLDFLIYVNEESQVKSLFESSIDKISD-SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNK 583 (679)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHTTTSSS-TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHH
Confidence 788899889999999999999999752210 0124578888888888999999999999999994 4666555555544
Q ss_pred H
Q 047648 517 M 517 (537)
Q Consensus 517 ~ 517 (537)
|
T Consensus 584 y 584 (679)
T 4e6h_A 584 Y 584 (679)
T ss_dssp T
T ss_pred h
Confidence 4
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.63 E-value=9.7e-14 Score=131.14 Aligned_cols=250 Identities=9% Similarity=-0.005 Sum_probs=191.3
Q ss_pred chHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCC-hhHHHHHHHHHHhCCCCCCHHHHHHH
Q 047648 114 RNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGK-FEDVEYVYKEMKRRRIELNLDSFNFV 192 (537)
Q Consensus 114 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 192 (537)
.+..+|..+...+...|++++|++.|+++++.+ +.+..+|+.+..++...|+ +++|+..|++.++.... +...|+.+
T Consensus 95 ~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~ 172 (382)
T 2h6f_A 95 KFRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred hhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHH
Confidence 345788889999999999999999999999875 4477889999999999997 99999999999987654 78899999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-
Q 047648 193 LNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCK- 271 (537)
Q Consensus 193 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~- 271 (537)
..++...|++++|+..|+++++... -+...|..+..++.. .|++++|+..++++++.... +...|+.+..++.+
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~---~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l 247 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQE---FKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNT 247 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHH---HTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHH---cCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHh
Confidence 9999999999999999999998753 367788888888888 88899999999999887543 77888888888888
Q ss_pred cCCHHHH-----HHHHHHHHhCCCCCChhhHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-
Q 047648 272 DENISAA-----MKVFEEMGSHGIAAGVVTYNSLINGLCVDG--KLDEAVALRDEMMASGLKPNVVTSNALINGFCKKK- 343 (537)
Q Consensus 272 ~g~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~- 343 (537)
.|..++| +..|++..... +-+...|..+...+...| ++++|++.+.++ +. .+.+...+..+..+|.+.|
T Consensus 248 ~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~ 324 (382)
T 2h6f_A 248 TGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLE 324 (382)
T ss_dssp TCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhc
Confidence 5655666 47777776653 225667777777777777 577888888776 32 2445667777777777753
Q ss_pred --------CHHHHHHHHHHH-HHcCCCCCHhHHHHHHHHH
Q 047648 344 --------LVEKARVLFDDI-SEQGLSPSVITYNTLIDAY 374 (537)
Q Consensus 344 --------~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~ 374 (537)
..++|..+++++ .+.++. ....|..+...+
T Consensus 325 ~~~~~~~~~~~~A~~~~~~l~~~~DP~-r~~~w~~~~~~l 363 (382)
T 2h6f_A 325 NQCDNKEDILNKALELCEILAKEKDTI-RKEYWRYIGRSL 363 (382)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHH
Confidence 247777777777 454221 334455444443
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=6.1e-14 Score=124.89 Aligned_cols=202 Identities=13% Similarity=0.122 Sum_probs=148.9
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047648 258 NEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALIN 337 (537)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 337 (537)
....|..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|++.++++.+.. +.+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 45566777778888888888888888887753 3367778888888888888888888888888764 446777888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 047648 338 GFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEG 417 (537)
Q Consensus 338 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 417 (537)
.+...|++++|...++++.+.... +...+..+...+...|++++|...++++.+..+. +...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHH
Confidence 888889999999999888876543 6777888888888999999999999988876543 67788888888999999999
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHch
Q 047648 418 VRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKME 464 (537)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 464 (537)
|...++++.+.. +.+..++..+..+|...|++++|.+.++++++..
T Consensus 178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999888764 4567788889999999999999999999988643
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.61 E-value=4.6e-13 Score=119.95 Aligned_cols=201 Identities=13% Similarity=-0.012 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047648 259 EVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALING 338 (537)
Q Consensus 259 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 338 (537)
...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4567777788888888888888888887653 3366778888888888888888888888888764 3467778888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 047648 339 FCKKKLVEKARVLFDDISEQGLSP-SVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEG 417 (537)
Q Consensus 339 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 417 (537)
+...|++++|...++++.+.+..| +...+..+..++...|++++|...++++.+..+. +...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHH
Confidence 888899999999888887732233 4567778888888899999999999988876544 67788888888999999999
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047648 418 VRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKM 463 (537)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 463 (537)
|...++++.+.. +.+...+..+...+...|++++|.+.++++.+.
T Consensus 194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999888764 456777888888889999999999999988763
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=3.3e-12 Score=115.87 Aligned_cols=222 Identities=11% Similarity=-0.025 Sum_probs=169.5
Q ss_pred ChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCChh
Q 047648 220 KVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCK----DENISAAMKVFEEMGSHGIAAGVV 295 (537)
Q Consensus 220 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~ 295 (537)
+..++..+...+.. .+++++|+..|++..+. -+...+..+...|.. .+++++|...|++..+.+ +..
T Consensus 5 ~~~a~~~lg~~~~~---~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~ 75 (273)
T 1ouv_A 5 DPKELVGLGAKSYK---EKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSN 75 (273)
T ss_dssp CHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred ChHHHHHHHHHHHh---CCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHH
Confidence 44556666666666 67777777777777763 245666777777777 788888888888877764 667
Q ss_pred hHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHhHH
Q 047648 296 TYNSLINGLCV----DGKLDEAVALRDEMMASGLKPNVVTSNALINGFCK----KKLVEKARVLFDDISEQGLSPSVITY 367 (537)
Q Consensus 296 ~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 367 (537)
.+..+...|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+
T Consensus 76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~ 149 (273)
T 1ouv_A 76 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGC 149 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHH
Confidence 77777777877 888888888888887764 66777777788887 888888888888887764 55667
Q ss_pred HHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChHHHHH
Q 047648 368 NTLIDAYCK----EGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSR----EGNVEGVRNIMNELVNNGMRAGLVTYNI 439 (537)
Q Consensus 368 ~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 439 (537)
..+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..
T Consensus 150 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 223 (273)
T 1ouv_A 150 TILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFN 223 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHH
Confidence 777777777 788888888888888764 56677778888888 888888888888888764 2567777
Q ss_pred HHHHHHh----cCChHHHHHHHHHHHH
Q 047648 440 LVGALCK----DGKSKKAVSLLDEMFK 462 (537)
Q Consensus 440 l~~~~~~----~g~~~~A~~~~~~~~~ 462 (537)
+..+|.. .+++++|.+.|+++.+
T Consensus 224 l~~~~~~g~~~~~~~~~A~~~~~~a~~ 250 (273)
T 1ouv_A 224 LGAMQYNGEGVTRNEKQAIENFKKGCK 250 (273)
T ss_dssp HHHHHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred HHHHHHcCCCcccCHHHHHHHHHHHHH
Confidence 8888888 8888888888888876
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=6.7e-14 Score=127.18 Aligned_cols=246 Identities=8% Similarity=-0.111 Sum_probs=170.4
Q ss_pred CCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHH
Q 047648 237 IGKMYKADAVFKDMVENGIL---PNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEA 313 (537)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 313 (537)
.+++++|+..++++.+.... .+..++..+...+...|++++|...|+++.+.. +.+...|..+..++...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 57788888888888765321 135667777888888888888888888877653 33577788888888888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047648 314 VALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDR 393 (537)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 393 (537)
++.++++.+.. +.+...+..+..++...|++++|...++++.+..+ +.......+..+...|++++|...+++....
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP--NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 88888887753 34567788888888888888888888888877533 3333333444456668888888888777765
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCC
Q 047648 394 GVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMR---AGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWP 470 (537)
Q Consensus 394 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 470 (537)
... +...+ .++..+...++.++|...+++..+.... .+...+..+..+|...|++++|...|+++++.. |
T Consensus 174 ~~~-~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p 246 (275)
T 1xnf_A 174 SDK-EQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN-----V 246 (275)
T ss_dssp SCC-CSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----C
T ss_pred CCc-chHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-----c
Confidence 332 33333 3666667777888888888877654211 115677888888999999999999999887532 3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHH
Q 047648 471 NIVTYNVLIKGFCQKGKLEDANGLL 495 (537)
Q Consensus 471 ~~~~~~~l~~~~~~~g~~~~A~~~~ 495 (537)
+. +.....++...|++++|++.+
T Consensus 247 ~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 247 HN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TT--CHHHHHHHHHHHHHHHC----
T ss_pred hh--HHHHHHHHHHHHHHHhhHHHH
Confidence 21 233355677778888887766
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.60 E-value=8.8e-13 Score=115.69 Aligned_cols=205 Identities=11% Similarity=-0.032 Sum_probs=143.8
Q ss_pred CchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 047648 113 CRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFV 192 (537)
Q Consensus 113 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 192 (537)
+.++..+..++..+...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.+++..+... .+..++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l 82 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHH
Confidence 4556777888888888888888888888888764 44567788888888888888888888888777643 366777777
Q ss_pred HHHHHhc-CChhHHHHHHHHHHhCCCCCC-hhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 047648 193 LNGLCKA-GKLNKASDIMEDMKSLGVSPK-VVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFC 270 (537)
Q Consensus 193 ~~~~~~~-g~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 270 (537)
...+... |++++|.+.++++.+.+..|+ ...+..+...+.. .|++++|...++++.+... .+...+..+...+.
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~ 158 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAK---QGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKM 158 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHH
Confidence 8888888 888888888888776322232 4556666677777 6777777777777766432 24566666777777
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 047648 271 KDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMAS 323 (537)
Q Consensus 271 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 323 (537)
+.|++++|...++++.+.....+...+..+...+...|+.+.|..+++.+.+.
T Consensus 159 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 159 LAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 77777777777777665432134555666666666677777777777666543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.59 E-value=5.2e-13 Score=113.23 Aligned_cols=172 Identities=13% Similarity=0.066 Sum_probs=137.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047648 328 NVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIA 407 (537)
Q Consensus 328 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 407 (537)
++.+|..+...+...|++++|...|++..+..+. +...+..+..+|.+.|++++|...+.......+. +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 5667788888888888888888888888777544 6777888888888888888888888888776554 6777777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCC
Q 047648 408 GLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGK 487 (537)
Q Consensus 408 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 487 (537)
.+...++++.+...+.+..+.. +.+...+..+..+|.+.|++++|++.|+++++.. +.+..+|..+..+|.+.|+
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~~lg~~~~~~g~ 156 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK----PGFIRAYQSIGLAYEGKGL 156 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc----chhhhHHHHHHHHHHHCCC
Confidence 8888888888888888888764 5567788888888888999999999998888644 3467788888888999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHH
Q 047648 488 LEDANGLLNELLEKGLIPNQT 508 (537)
Q Consensus 488 ~~~A~~~~~~~~~~g~~p~~~ 508 (537)
+++|++.|++.++ +.|+..
T Consensus 157 ~~~A~~~~~~al~--~~p~~a 175 (184)
T 3vtx_A 157 RDEAVKYFKKALE--KEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHHH--TTHHHH
T ss_pred HHHHHHHHHHHHh--CCccCH
Confidence 9999999998888 556553
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-13 Score=132.69 Aligned_cols=306 Identities=15% Similarity=0.064 Sum_probs=162.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----hhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHC----CCC
Q 047648 185 NLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPK----VVTYNILIDGYCKKGGIGKMYKADAVFKDMVEN----GIL 256 (537)
Q Consensus 185 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~----~~~ 256 (537)
....+......+...|++++|...|++..+.+.. + ...+..+...+.. .|++++|...+++.... +..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~~~~ 83 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFY---LHDYAKALEYHHHDLTLARTIGDQ 83 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHHHHhcccc
Confidence 4445555666666666666666666666665311 2 2345555555655 56666666666654321 111
Q ss_pred C-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 047648 257 P-NEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIA-AGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNA 334 (537)
Q Consensus 257 p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 334 (537)
| ...++..+...+...|++++|...+++....... ++. .....++..
T Consensus 84 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~ 132 (406)
T 3sf4_A 84 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYN 132 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-------------------------------cchHHHHHH
Confidence 1 1234444555555555555555555554331000 000 000223444
Q ss_pred HHHHHHhcCC--------------------HHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHHHhcCChHHHHHHHHH
Q 047648 335 LINGFCKKKL--------------------VEKARVLFDDISEQ----GLSP-SVITYNTLIDAYCKEGRMEDAFAMRNS 389 (537)
Q Consensus 335 ll~~~~~~~~--------------------~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 389 (537)
+...+...|+ +++|...+.+..+. +..+ ...++..+...|...|++++|...+++
T Consensus 133 l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 212 (406)
T 3sf4_A 133 LGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQ 212 (406)
T ss_dssp HHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHH
T ss_pred HHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4444444444 55555554443321 1001 123455566666666777777666666
Q ss_pred HHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-ChHHHHHHHHHHHhcCChHHHHHHHHH
Q 047648 390 MLDRGV-LPD----VSTYNCLIAGLSREGNVEGVRNIMNELVNNG----MRA-GLVTYNILVGALCKDGKSKKAVSLLDE 459 (537)
Q Consensus 390 ~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 459 (537)
..+... .++ ..++..+...+...|++++|...+++..+.. ..+ ...++..+...|...|++++|.+.+++
T Consensus 213 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 292 (406)
T 3sf4_A 213 RLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 292 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 553210 011 2356666667777777777777777665431 001 144666777777777777777777777
Q ss_pred HHHchhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHhHHHHHHHHHhcCCcCC
Q 047648 460 MFKMEKEKKWP--NIVTYNVLIKGFCQKGKLEDANGLLNELLEK----GLIP-NQTTYQIVREEMMEKGFIPD 525 (537)
Q Consensus 460 ~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~g~~~~ 525 (537)
+++.......+ ...++..+..+|...|++++|...+++.++. +..+ ...++..+...+...|....
T Consensus 293 a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 293 HLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 76643321111 1456667777777778888887777776652 2111 13455566666767666543
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-13 Score=133.72 Aligned_cols=307 Identities=14% Similarity=0.017 Sum_probs=199.6
Q ss_pred CCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhCC--C--CC
Q 047648 148 KSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELN----LDSFNFVLNGLCKAGKLNKASDIMEDMKSLG--V--SP 219 (537)
Q Consensus 148 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~--~~ 219 (537)
......+......+...|++++|...|++..+.... + ..++..+...+...|++++|...+++..+.. . .|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 445667778888999999999999999999887433 3 3578889999999999999999999998752 1 11
Q ss_pred -ChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHhccCC-------------------
Q 047648 220 -KVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGIL-PN----EVTFNTLIDGFCKDEN------------------- 274 (537)
Q Consensus 220 -~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~------------------- 274 (537)
...++..+...+.. .|++++|...+++....... ++ ..++..+...+...|+
T Consensus 85 ~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~ 161 (406)
T 3sf4_A 85 GEAKASGNLGNTLKV---LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRD 161 (406)
T ss_dssp HHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHH
T ss_pred HHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHH
Confidence 24467778888888 89999999999987753100 11 3356667777777777
Q ss_pred -HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047648 275 -ISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGL-KPNVVTSNALINGFCKKKLVEKARVLF 352 (537)
Q Consensus 275 -~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~ 352 (537)
+++|...+++.... +.. .+. +....++..+...+...|++++|...+
T Consensus 162 ~~~~A~~~~~~al~~----------------------------~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 210 (406)
T 3sf4_A 162 ALQAAVDFYEENLSL----------------------------VTA---LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAH 210 (406)
T ss_dssp HHHHHHHHHHHHHHH----------------------------HHH---TTCHHHHHHHHHHHHHHHHHHTBHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----------------------------HHh---ccCcHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 66666665554321 000 000 001234444555555555555555555
Q ss_pred HHHHHcCC-CCC----HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHH
Q 047648 353 DDISEQGL-SPS----VITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVL-PD----VSTYNCLIAGLSREGNVEGVRNIM 422 (537)
Q Consensus 353 ~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~ 422 (537)
++..+... .++ ..++..+..+|...|++++|...+++..+.... ++ ..++..+...+...|++++|...+
T Consensus 211 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 290 (406)
T 3sf4_A 211 EQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYH 290 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 55443200 001 235666677777777777777777766542110 01 446677777888888888888888
Q ss_pred HHHHHCC----CC-CChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCC--CCHHHHHHHHHHHHhcCCHH
Q 047648 423 NELVNNG----MR-AGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKW--PNIVTYNVLIKGFCQKGKLE 489 (537)
Q Consensus 423 ~~~~~~~----~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~ 489 (537)
++..+.. .. ....++..+..+|...|++++|.+.+++++++...... ....++..+...+...|+..
T Consensus 291 ~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 291 LKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 7776531 01 11456778888888899999999999888775433211 13456667777777777653
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.1e-13 Score=131.94 Aligned_cols=280 Identities=14% Similarity=0.060 Sum_probs=162.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh----hhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHC----CC-CC
Q 047648 187 DSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKV----VTYNILIDGYCKKGGIGKMYKADAVFKDMVEN----GI-LP 257 (537)
Q Consensus 187 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~----~~-~p 257 (537)
..+..+...+...|++++|...|++..+.+.. +. ..+..+...+.. .|++++|+..+++.... +. +.
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFY---LGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHccCchH
Confidence 34445555666667777777777766665311 21 245555555555 56666666666655432 10 11
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHH
Q 047648 258 NEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASG-LKPNVVTSNALI 336 (537)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ll 336 (537)
...++..+...|...|++++|...+++..... ...+ .+....++..+.
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~l~ 173 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLA-------------------------------RQLGDRLSEGRALYNLG 173 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-------------------------------HHhhchHHHHHHHHHHH
Confidence 22344444455555555555555555443210 0000 011123444455
Q ss_pred HHHHhcCC-----------------HHHHHHHHHHHHHc----CC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 047648 337 NGFCKKKL-----------------VEKARVLFDDISEQ----GL-SPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRG 394 (537)
Q Consensus 337 ~~~~~~~~-----------------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 394 (537)
..+...|+ +++|...+.+..+. +. ......+..+...|...|++++|...+++..+..
T Consensus 174 ~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 253 (411)
T 4a1s_A 174 NVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA 253 (411)
T ss_dssp HHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 55555555 55555555544321 11 1123356667777777777777777777766431
Q ss_pred CC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CChHHHHHHHHHHHhcCChHHHHHHHHHHHHch
Q 047648 395 VL-PD----VSTYNCLIAGLSREGNVEGVRNIMNELVNNGMR-----AGLVTYNILVGALCKDGKSKKAVSLLDEMFKME 464 (537)
Q Consensus 395 ~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 464 (537)
.. ++ ..++..+...+...|++++|...+++..+.... ....++..+...|...|++++|.+.++++++..
T Consensus 254 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 333 (411)
T 4a1s_A 254 REFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA 333 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 10 11 236677777888888888888888877654110 114667788888889999999999998887643
Q ss_pred hcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 465 KEKK--WPNIVTYNVLIKGFCQKGKLEDANGLLNELLEK 501 (537)
Q Consensus 465 ~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (537)
.... .....++..+..+|...|++++|...+++..+.
T Consensus 334 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 334 QELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3211 112457778888899999999999999998873
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.54 E-value=2.3e-10 Score=115.42 Aligned_cols=410 Identities=10% Similarity=-0.008 Sum_probs=283.4
Q ss_pred CchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCC---hhHHHHHHHHHHhCC-CCCCHHH
Q 047648 113 CRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGK---FEDVEYVYKEMKRRR-IELNLDS 188 (537)
Q Consensus 113 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~~~~ 188 (537)
|.+...|..++..+.+.+.++.+..+|+++... +|.+...|...+..-.+.+. ++.+..+|+...... .+|++..
T Consensus 63 p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 63 PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 678899999999999999999999999999987 57788899999999999999 999999999998874 1478889
Q ss_pred HHHHHHHHHhcCCh--------hHHHHHHHHHHh-CCC-CCC-hhhHHHHHHHHhcCCC------CCCHHHHHHHHHHHH
Q 047648 189 FNFVLNGLCKAGKL--------NKASDIMEDMKS-LGV-SPK-VVTYNILIDGYCKKGG------IGKMYKADAVFKDMV 251 (537)
Q Consensus 189 ~~~l~~~~~~~g~~--------~~a~~~~~~~~~-~~~-~~~-~~~~~~ll~~~~~~~~------~~~~~~a~~~~~~~~ 251 (537)
|...+....+.++. +.+.++|+.... .|. .++ ...|...+........ .++.+.+..+|++.+
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 98888776666554 334577887664 465 554 4678877766543111 234567888888887
Q ss_pred HCCCCCCHHHHHH---HHHHHh----------ccCCHHHHHHHHHHHHh--CCC----C-----------C--C------
Q 047648 252 ENGILPNEVTFNT---LIDGFC----------KDENISAAMKVFEEMGS--HGI----A-----------A--G------ 293 (537)
Q Consensus 252 ~~~~~p~~~~~~~---l~~~~~----------~~g~~~~a~~~~~~~~~--~~~----~-----------~--~------ 293 (537)
......-..+|.. ...... ...+++.|...+.++.. .++ + | +
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 5311111233322 111110 11234445555555322 111 1 1 0
Q ss_pred hhhHHHHHHHHHhCC-------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCCHh
Q 047648 294 VVTYNSLINGLCVDG-------KLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKAR-VLFDDISEQGLSPSVI 365 (537)
Q Consensus 294 ~~~~~~l~~~~~~~~-------~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~ 365 (537)
...|...+.---..+ ..+.+..+|++++.. ++-....|...+..+...|+.++|. .+|++..... +.+..
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~ 379 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAV 379 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHH
Confidence 123444443322222 134566788888776 3557788888888888999999996 9999998763 34677
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCC---------CC------------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047648 366 TYNTLIDAYCKEGRMEDAFAMRNSMLDRGV---------LP------------DVSTYNCLIAGLSREGNVEGVRNIMNE 424 (537)
Q Consensus 366 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------~p------------~~~~~~~l~~~~~~~~~~~~a~~~~~~ 424 (537)
.|...+...-+.|+++.|.++|+++++... .| ...+|...+....+.|+.+.|..+|.+
T Consensus 380 Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~ 459 (679)
T 4e6h_A 380 LAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGK 459 (679)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 778888888899999999999999886410 13 134688888888889999999999999
Q ss_pred HHHCCCCCChHHHHHHHHHHHhc-CChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 047648 425 LVNNGMRAGLVTYNILVGALCKD-GKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGL 503 (537)
Q Consensus 425 ~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 503 (537)
.++.-.......|...+..-.+. ++++.|.++|+..++. ++.+...|..++......|+.+.|..+|++.+....
T Consensus 460 A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~----~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 460 CRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY----FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH----HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred HHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH----CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 99861123344555444444454 4599999999999873 244677888899988899999999999999998543
Q ss_pred CC--CHHhHHHHHHHHHhcCCcCCccCC
Q 047648 504 IP--NQTTYQIVREEMMEKGFIPDIEGH 529 (537)
Q Consensus 504 ~p--~~~~~~~l~~~~~~~g~~~~a~~~ 529 (537)
.+ ....|...++--.+.|..+.+..+
T Consensus 536 ~~~~~~~lw~~~~~fE~~~G~~~~~~~v 563 (679)
T 4e6h_A 536 DSHLLKMIFQKVIFFESKVGSLNSVRTL 563 (679)
T ss_dssp STTHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 22 235677777777778887665443
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.53 E-value=9.7e-12 Score=114.89 Aligned_cols=220 Identities=10% Similarity=-0.009 Sum_probs=141.1
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHH-------hCCCH-------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 047648 276 SAAMKVFEEMGSHGIAAGVVTYNSLINGLC-------VDGKL-------DEAVALRDEMMASGLKPNVVTSNALINGFCK 341 (537)
Q Consensus 276 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 341 (537)
++|..+|+++.... +.+...|..++..+. +.|++ ++|..+|++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45666666665532 234555555555543 34664 6777777777763112344567777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHh-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHH
Q 047648 342 KKLVEKARVLFDDISEQGLSPSVI-TYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLS-REGNVEGVR 419 (537)
Q Consensus 342 ~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~ 419 (537)
.|++++|..+|+++.+..+. +.. .|..++..+.+.|++++|..+|++.++..+. +...|........ ..|+.++|.
T Consensus 112 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777777764322 232 6777777777777777777777777765432 4444443333322 257788888
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 047648 420 NIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWP--NIVTYNVLIKGFCQKGKLEDANGLLNE 497 (537)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 497 (537)
.+|++.++.. +.+...|..++..+.+.|++++|+.+|+++++.. ..+| ....|..++..+.+.|+.++|..++++
T Consensus 190 ~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 190 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG--SLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS--SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8887777653 3456777777777777888888888888877521 1233 356777777777777888888888888
Q ss_pred HHHc
Q 047648 498 LLEK 501 (537)
Q Consensus 498 ~~~~ 501 (537)
+.+.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7773
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.52 E-value=1e-12 Score=122.91 Aligned_cols=279 Identities=15% Similarity=0.072 Sum_probs=160.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----hhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHC----CCCC-C
Q 047648 188 SFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPK----VVTYNILIDGYCKKGGIGKMYKADAVFKDMVEN----GILP-N 258 (537)
Q Consensus 188 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~ 258 (537)
.+......+...|++++|...|+++.+.... + ...+..+...+.. .|++++|...+++.... +..| .
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFY---LHDYAKALEYHHHDLTLARTIGDQLGE 82 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHhhcccccHHH
Confidence 3444455556666666666666666654211 1 2344455555555 55666666555554321 1011 1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047648 259 EVTFNTLIDGFCKDENISAAMKVFEEMGSHGI-AAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALIN 337 (537)
Q Consensus 259 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 337 (537)
..++..+...+...|++++|...+++..+... .++. .....++..+..
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~~ 131 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYNLGN 131 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCc-------------------------------hHHHHHHHHHHH
Confidence 23334444444444444444444444332100 0000 001224444555
Q ss_pred HHHhcCC--------------------HHHHHHHHHHHHHc----CCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047648 338 GFCKKKL--------------------VEKARVLFDDISEQ----GLS-PSVITYNTLIDAYCKEGRMEDAFAMRNSMLD 392 (537)
Q Consensus 338 ~~~~~~~--------------------~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 392 (537)
.+...|+ +++|...+++..+. +.. .....+..+...+...|++++|...+++..+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 211 (338)
T 3ro2_A 132 VYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 211 (338)
T ss_dssp HHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5555555 55555555554321 111 1233566677777778888888888777664
Q ss_pred CCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-ChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 393 RGV-----LPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNG----MRA-GLVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 393 ~~~-----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
... .....++..+...+...|++++|...+++..+.. .++ ...++..+...+...|++++|...++++++
T Consensus 212 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 212 IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 291 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 310 1112367777788888888888888888776531 011 145777888899999999999999998876
Q ss_pred chhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 463 MEKEKKW--PNIVTYNVLIKGFCQKGKLEDANGLLNELLEK 501 (537)
Q Consensus 463 ~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (537)
..+.... ....++..+...|...|++++|...+++..+.
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 292 IAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 4332111 12457778889999999999999999999873
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.52 E-value=4.3e-12 Score=107.51 Aligned_cols=166 Identities=14% Similarity=0.089 Sum_probs=108.1
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 047648 293 GVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLID 372 (537)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 372 (537)
++..|..+...|...|++++|++.|++..+.. +-+..++..+..++.+.|++++|...+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 44556666666666666666666666666543 334556666666666666666666666666555333 4555566666
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHH
Q 047648 373 AYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKK 452 (537)
Q Consensus 373 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 452 (537)
.+...++++.|...+.+..+..+. +...+..+...+...|++++|++.|++..+.. +.+..++..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 666677777777777766665433 56666667777777777777777777776654 4456667777777777777777
Q ss_pred HHHHHHHHHH
Q 047648 453 AVSLLDEMFK 462 (537)
Q Consensus 453 A~~~~~~~~~ 462 (537)
|++.|+++++
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7777777765
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.9e-12 Score=122.52 Aligned_cols=231 Identities=9% Similarity=-0.026 Sum_probs=174.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcC--C----CCCHHHHH
Q 047648 265 LIDGFCKDENISAAMKVFEEMGSH----GIAA-GVVTYNSLINGLCVDGKLDEAVALRDEMMASG--L----KPNVVTSN 333 (537)
Q Consensus 265 l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~----~~~~~~~~ 333 (537)
....+...|++++|...|++..+. +-.+ ...++..+...|...|+++.|+..+.+..+.- . +....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556677889999999999998763 1111 24678888899999999999999999887631 1 11235778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCHHHHH
Q 047648 334 ALINGFCKKKLVEKARVLFDDISEQGLS-PS----VITYNTLIDAYCKEGRMEDAFAMRNSMLD-----RGVLPDVSTYN 403 (537)
Q Consensus 334 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~ 403 (537)
.+...|...|++++|...+++..+.... ++ ..++..+..+|...|++++|...+++..+ ...+....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8889999999999999999887653111 11 24678899999999999999999999887 33133467888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC----CCCCChHHHHHHHHHHHhcCC---hHHHHHHHHHHHHchhcCCCCCHHHHH
Q 047648 404 CLIAGLSREGNVEGVRNIMNELVNN----GMRAGLVTYNILVGALCKDGK---SKKAVSLLDEMFKMEKEKKWPNIVTYN 476 (537)
Q Consensus 404 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~ 476 (537)
.+...+...|++++|...+++..+. +-+.....+..+...+...|+ +++|+.++++.. ..+.....+.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~-----~~~~~~~~~~ 343 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM-----LYADLEDFAI 343 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT-----CHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc-----CHHHHHHHHH
Confidence 9999999999999999999988764 112223345778888889998 777777777652 1122345777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 477 VLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
.+...|...|++++|...+++..+
T Consensus 344 ~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 344 DVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 889999999999999999999876
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.9e-13 Score=130.95 Aligned_cols=279 Identities=13% Similarity=0.043 Sum_probs=175.3
Q ss_pred ChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHhCC--C---CCC
Q 047648 150 SVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNL----DSFNFVLNGLCKAGKLNKASDIMEDMKSLG--V---SPK 220 (537)
Q Consensus 150 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~---~~~ 220 (537)
....+..+...+...|++++|...|++..+.... +. ..+..+...|...|++++|.+.+++..+.. . ...
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 3445666778899999999999999999987433 33 478889999999999999999999998751 1 223
Q ss_pred hhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHhccCC-----------------HHHH
Q 047648 221 VVTYNILIDGYCKKGGIGKMYKADAVFKDMVEN----G-ILPNEVTFNTLIDGFCKDEN-----------------ISAA 278 (537)
Q Consensus 221 ~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~----~-~~p~~~~~~~l~~~~~~~g~-----------------~~~a 278 (537)
..++..+...|.. .|++++|...+++.... + .+....++..+...|...|+ +++|
T Consensus 126 ~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A 202 (411)
T 4a1s_A 126 AKSSGNLGNTLKV---MGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRA 202 (411)
T ss_dssp HHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHH
Confidence 4567788888888 89999999999987653 1 11123456667777777777 6666
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 279 MKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQ 358 (537)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 358 (537)
...+++..+. ..... .......++..+...+...|++++|...+++..+.
T Consensus 203 ~~~~~~al~~----------------------------~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 252 (411)
T 4a1s_A 203 VEFYQENLKL----------------------------MRDLG--DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRI 252 (411)
T ss_dssp HHHHHHHHHH----------------------------HHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----------------------------HHHcC--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 6666554321 00000 00001123344444444444555444444444332
Q ss_pred CCC-CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047648 359 GLS-PS----VITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVL-----PDVSTYNCLIAGLSREGNVEGVRNIMNELVNN 428 (537)
Q Consensus 359 ~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 428 (537)
... ++ ...+..+..+|...|++++|...+++..+.... ....++..+...+...|++++|...+++..+.
T Consensus 253 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 253 AREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI 332 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 000 01 124555666666666666666666665542110 11345666677777777777777777766653
Q ss_pred C-----CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 429 G-----MRAGLVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 429 ~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
. ......++..+..+|...|++++|.+.++++++
T Consensus 333 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 333 AQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1 011134667777788888888888888888765
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.8e-12 Score=127.30 Aligned_cols=213 Identities=11% Similarity=-0.034 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047648 275 ISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKL-DEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFD 353 (537)
Q Consensus 275 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 353 (537)
++++...++...... +.+...+..+..++...|++ ++|++.|+++.+.. +.+...+..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445555555544432 23556666666677777777 77777777766653 3345667777777777777777777777
Q ss_pred HHHHcCCCCCHhHHHHHHHHHHhc---------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------CCHH
Q 047648 354 DISEQGLSPSVITYNTLIDAYCKE---------GRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSRE--------GNVE 416 (537)
Q Consensus 354 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------~~~~ 416 (537)
+..+.. |+...+..+..+|... |++++|...+++.++..+. +...|..+..+|... |+++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence 776653 4456667777777777 7778888888777776544 677777777777777 7788
Q ss_pred HHHHHHHHHHHCCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047648 417 GVRNIMNELVNNGMR---AGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANG 493 (537)
Q Consensus 417 ~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 493 (537)
+|...|++..+.. + .+...|..+..+|...|++++|++.|+++++.. +.+...+..+..++...|++++|++
T Consensus 239 ~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~----p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 239 QALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD----PAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888753 3 467788888888888888888888888887644 3356677888888888888888877
Q ss_pred HHHH
Q 047648 494 LLNE 497 (537)
Q Consensus 494 ~~~~ 497 (537)
.+++
T Consensus 314 ~~~~ 317 (474)
T 4abn_A 314 SKGK 317 (474)
T ss_dssp HTTT
T ss_pred Hhcc
Confidence 5543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.49 E-value=7.1e-12 Score=119.83 Aligned_cols=233 Identities=9% Similarity=-0.043 Sum_probs=162.8
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCC--C----CCChh
Q 047648 227 LIDGYCKKGGIGKMYKADAVFKDMVEN----GILP-NEVTFNTLIDGFCKDENISAAMKVFEEMGSHG--I----AAGVV 295 (537)
Q Consensus 227 ll~~~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~----~~~~~ 295 (537)
....+.. .|++++|+..+++.... +-.+ ...++..+...|...|++++|...+++..+.. . +....
T Consensus 109 ~g~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 185 (383)
T 3ulq_A 109 RGMYELD---QREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185 (383)
T ss_dssp HHHHHHH---TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHH
T ss_pred HHHHHHH---hcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHH
Confidence 3344445 67777777777777653 1111 23567777778888888888888887765421 1 11234
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHh
Q 047648 296 TYNSLINGLCVDGKLDEAVALRDEMMASGL-KP----NVVTSNALINGFCKKKLVEKARVLFDDISEQ----GL-SPSVI 365 (537)
Q Consensus 296 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~ 365 (537)
++..+..+|...|++++|++.+.+..+... .+ ...++..+..+|...|++++|...+++..+. +. +....
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 677778888889999999988888765310 01 1246788888899999999999999888762 22 33456
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-ChHHH
Q 047648 366 TYNTLIDAYCKEGRMEDAFAMRNSMLDR----GVLPDVSTYNCLIAGLSREGN---VEGVRNIMNELVNNGMRA-GLVTY 437 (537)
Q Consensus 366 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~-~~~~~ 437 (537)
++..+..+|.+.|++++|...+++..+. +-......+..+...+...|+ +++|..++++. +..| ....+
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~ 342 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFA 342 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHH
Confidence 7888899999999999999999887753 111122335667778888888 67777777665 2223 34577
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHchh
Q 047648 438 NILVGALCKDGKSKKAVSLLDEMFKMEK 465 (537)
Q Consensus 438 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 465 (537)
..+...|...|++++|.+.+++++++..
T Consensus 343 ~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 343 IDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999987543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.49 E-value=9.9e-13 Score=123.06 Aligned_cols=279 Identities=14% Similarity=0.034 Sum_probs=180.0
Q ss_pred hhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhCC----CC-CCh
Q 047648 151 VLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELN----LDSFNFVLNGLCKAGKLNKASDIMEDMKSLG----VS-PKV 221 (537)
Q Consensus 151 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~-~~~ 221 (537)
...+......+...|++++|...|++..+.... + ...+..+...+...|++++|.+.+++..+.. .. ...
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 344566677889999999999999999887433 3 3678889999999999999999999998752 11 124
Q ss_pred hhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCC--------------------HH
Q 047648 222 VTYNILIDGYCKKGGIGKMYKADAVFKDMVENGI-LPN----EVTFNTLIDGFCKDEN--------------------IS 276 (537)
Q Consensus 222 ~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~--------------------~~ 276 (537)
.++..+...+.. .|++++|...+++..+... .++ ..++..+...+...|+ ++
T Consensus 84 ~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 160 (338)
T 3ro2_A 84 KASGNLGNTLKV---LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQ 160 (338)
T ss_dssp HHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHH
T ss_pred HHHHHHHHHHHH---ccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHH
Confidence 567788888888 8999999999998765311 112 2366667777777777 66
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047648 277 AAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDIS 356 (537)
Q Consensus 277 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 356 (537)
+|...+++.... ..... .......++..+...+...|++++|...+++..
T Consensus 161 ~A~~~~~~a~~~----------------------------~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 210 (338)
T 3ro2_A 161 AAVDLYEENLSL----------------------------VTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 210 (338)
T ss_dssp HHHHHHHHHHHH----------------------------HHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----------------------------HHhcC--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 666666554321 00000 000012234444445555555555555555443
Q ss_pred Hc----CC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047648 357 EQ----GL-SPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVL-PD----VSTYNCLIAGLSREGNVEGVRNIMNELV 426 (537)
Q Consensus 357 ~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 426 (537)
+. +. .....++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..
T Consensus 211 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 211 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 22 00 001225566666677777777777777666542100 01 4466677777788888888888887776
Q ss_pred HCC----C-CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047648 427 NNG----M-RAGLVTYNILVGALCKDGKSKKAVSLLDEMFKM 463 (537)
Q Consensus 427 ~~~----~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 463 (537)
+.. . .....++..+...|...|++++|.+.+++++++
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 291 AIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 531 0 111346777888888888888888888888764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.46 E-value=5.1e-11 Score=110.03 Aligned_cols=219 Identities=10% Similarity=0.025 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-------ccCCH-------HHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 047648 241 YKADAVFKDMVENGILPNEVTFNTLIDGFC-------KDENI-------SAAMKVFEEMGSHGIAAGVVTYNSLINGLCV 306 (537)
Q Consensus 241 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-------~~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 306 (537)
++|..+|++..... +-+...|..++..+. +.|++ ++|..+|++....-.+-+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45556666665532 224555655555544 24664 7788888887763112345577777777888
Q ss_pred CCCHHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH-hcCChHHH
Q 047648 307 DGKLDEAVALRDEMMASGLKPN-VV-TSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYC-KEGRMEDA 383 (537)
Q Consensus 307 ~~~~~~A~~~~~~~~~~~~~~~-~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A 383 (537)
.|++++|.++|+++.+. .|+ .. .|..++..+.+.|++++|..+|++..+..+. +...|...+.... ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888774 343 33 6777778888888888888888888776432 3444443333322 36888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--ChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 047648 384 FAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNG-MRA--GLVTYNILVGALCKDGKSKKAVSLLDEM 460 (537)
Q Consensus 384 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 460 (537)
..+|++.++..+. +...|..++..+.+.|++++|..+|++.+... ++| ....|..++..+.+.|+.+.|..+++++
T Consensus 189 ~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888776444 67788888888888888888888888888862 344 3567788888888888888888888888
Q ss_pred HHch
Q 047648 461 FKME 464 (537)
Q Consensus 461 ~~~~ 464 (537)
.+..
T Consensus 268 ~~~~ 271 (308)
T 2ond_A 268 FTAF 271 (308)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 7644
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.3e-12 Score=125.37 Aligned_cols=213 Identities=9% Similarity=-0.085 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH-HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHH
Q 047648 240 MYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENI-SAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRD 318 (537)
Q Consensus 240 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 318 (537)
+++++..+++..... +.+...+..+...+...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|++.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444555555444321 22555666666666666666 66666666665542 2245566666666666666666666666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc--------CChH
Q 047648 319 EMMASGLKPNVVTSNALINGFCKK---------KLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKE--------GRME 381 (537)
Q Consensus 319 ~~~~~~~~~~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 381 (537)
++.+. .|+...+..+...+... |++++|...|++..+..+. +...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence 66654 35556666666666666 7777777777777665433 566677777777766 7777
Q ss_pred HHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHH
Q 047648 382 DAFAMRNSMLDRGVL--PDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLD 458 (537)
Q Consensus 382 ~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 458 (537)
+|+..|++..+..+. -+...|..+..+|...|++++|...|++..+.. +.+...+..+..++...|++++|++.+.
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 777777777765431 266777777777777778888887777777764 4455667777777777777777766544
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=4e-12 Score=117.63 Aligned_cols=239 Identities=15% Similarity=0.073 Sum_probs=171.5
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhC-------CCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc------C
Q 047648 258 NEVTFNTLIDGFCKDENISAAMKVFEEMGSH-------GIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMAS------G 324 (537)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~ 324 (537)
+..++..+...+...|++++|..+|+++.+. ..+.....+..+...+...|++++|...++++... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567888899999999999999999998762 22334667888889999999999999999998764 2
Q ss_pred C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhC---
Q 047648 325 L-KPNVVTSNALINGFCKKKLVEKARVLFDDISEQ------GLSP-SVITYNTLIDAYCKEGRMEDAFAMRNSMLDR--- 393 (537)
Q Consensus 325 ~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 393 (537)
. +....++..+...+...|++++|...++++.+. +..| ....+..+...+...|++++|...++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 224567888899999999999999999988764 2222 3456788889999999999999999998764
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-------CCCC-------hHHHHHHHHHHHhcCChHHHHH
Q 047648 394 ---GVLP-DVSTYNCLIAGLSREGNVEGVRNIMNELVNNG-------MRAG-------LVTYNILVGALCKDGKSKKAVS 455 (537)
Q Consensus 394 ---~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~-------~~~~~~l~~~~~~~g~~~~A~~ 455 (537)
+..| ...++..+...+...|++++|...++++.+.. ..+. ...+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1122 34578888899999999999999999998631 1111 1222333344455566666777
Q ss_pred HHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 456 LLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
.++..... .+.+..++..+..+|.+.|++++|.+.+++.++
T Consensus 266 ~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 266 WYKACKVD----SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcCCC----CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77776531 133567889999999999999999999999887
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.5e-12 Score=117.28 Aligned_cols=241 Identities=17% Similarity=0.122 Sum_probs=174.6
Q ss_pred ChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC----
Q 047648 220 KVVTYNILIDGYCKKGGIGKMYKADAVFKDMVEN-------GILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSH---- 288 (537)
Q Consensus 220 ~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~-------~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---- 288 (537)
+..++..+...+.. .|++++|...++++.+. ..+....++..+...+...|++++|...++++...
T Consensus 26 ~~~~~~~l~~~~~~---~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 26 RLRTLHNLVIQYAS---QGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp HHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 34567888888988 89999999999998873 22334567888999999999999999999998753
Q ss_pred --C-CCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 289 --G-IAAGVVTYNSLINGLCVDGKLDEAVALRDEMMAS------GLKP-NVVTSNALINGFCKKKLVEKARVLFDDISEQ 358 (537)
Q Consensus 289 --~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 358 (537)
+ .+....++..+...+...|++++|...++++.+. +..| ....+..+...+...|++++|...++++.+.
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 2234567888999999999999999999998864 2222 3467888899999999999999999998764
Q ss_pred ------CCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC-------CCCC-------HHHHHHHHHHHHhcCCHHH
Q 047648 359 ------GLSP-SVITYNTLIDAYCKEGRMEDAFAMRNSMLDRG-------VLPD-------VSTYNCLIAGLSREGNVEG 417 (537)
Q Consensus 359 ------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~p~-------~~~~~~l~~~~~~~~~~~~ 417 (537)
+..| ...++..+..+|...|++++|...++++.+.. ..+. ...+..+...+...+.+.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGE 262 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 1122 34568889999999999999999999988631 1111 1122233333445566666
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHch
Q 047648 418 VRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKME 464 (537)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 464 (537)
+...+....... +....++..+..+|.+.|++++|.+.|++++++.
T Consensus 263 a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 263 YGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp CC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 777777766543 4456788999999999999999999999998754
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.7e-11 Score=113.84 Aligned_cols=232 Identities=9% Similarity=-0.053 Sum_probs=173.2
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCC-CC----ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcC--C---CC-CHHH
Q 047648 263 NTLIDGFCKDENISAAMKVFEEMGSHGI-AA----GVVTYNSLINGLCVDGKLDEAVALRDEMMASG--L---KP-NVVT 331 (537)
Q Consensus 263 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~---~~-~~~~ 331 (537)
......+...|++++|...|++..+... .+ ...++..+...|...|+++.|+..+.+..+.. . .+ ...+
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 184 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS 184 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence 3345566788999999999999876411 11 24567788889999999999999998877531 1 11 2457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCHHH
Q 047648 332 SNALINGFCKKKLVEKARVLFDDISEQ----GLS-PSVITYNTLIDAYCKEGRMEDAFAMRNSMLD-----RGVLPDVST 401 (537)
Q Consensus 332 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~ 401 (537)
+..+..+|...|++++|...|.+..+. +.. ....++..+..+|...|++++|...+++..+ ..+. ...+
T Consensus 185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~ 263 (378)
T 3q15_A 185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKV 263 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHH
Confidence 788889999999999999999887653 111 1234677888999999999999999999887 4433 3778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCChHHHHHHHHHHHhcCC---hHHHHHHHHHHHHchhcCCCCCHHH
Q 047648 402 YNCLIAGLSREGNVEGVRNIMNELVNNG----MRAGLVTYNILVGALCKDGK---SKKAVSLLDEMFKMEKEKKWPNIVT 474 (537)
Q Consensus 402 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~ 474 (537)
+..+...+.+.|++++|...+++..+.. -+.....+..+...+...|+ +.+|+..+++.. ..+.....
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-----~~~~~~~~ 338 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN-----LHAYIEAC 338 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT-----CHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC-----ChhHHHHH
Confidence 8899999999999999999999988752 12223456666777778888 777777777531 11223456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 475 YNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
+..+...|...|++++|...+++..+
T Consensus 339 ~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 339 ARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77888999999999999999999876
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.41 E-value=4e-11 Score=105.39 Aligned_cols=208 Identities=14% Similarity=0.038 Sum_probs=159.5
Q ss_pred CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 047648 292 AGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLI 371 (537)
Q Consensus 292 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 371 (537)
.++..+......+...|++++|+..|++..+...+++...+..+..++...|++++|...+++..+..+. +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 4567888888999999999999999999998763377778888999999999999999999999887544 667888899
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--ChHHHHHHHH
Q 047648 372 DAYCKEGRMEDAFAMRNSMLDRGVLPDV-------STYNCLIAGLSREGNVEGVRNIMNELVNNGMRA--GLVTYNILVG 442 (537)
Q Consensus 372 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~ 442 (537)
.+|...|++++|...+++..+..+. +. ..|..+...+...|++++|+..|++.++.. +. +...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHH
Confidence 9999999999999999999886544 45 557888888899999999999999998864 33 4577788888
Q ss_pred HHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 047648 443 ALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVRE 515 (537)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~ 515 (537)
+|...| ...++++..+. ..+...|.... ....+.+++|+..+++.++ +.|+......++.
T Consensus 162 ~~~~~~-----~~~~~~a~~~~----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~--l~p~~~~~~~~l~ 221 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA----SSNKEKYASEK--AKADAAFKKAVDYLGEAVT--LSPNRTEIKQMQD 221 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHhcc----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh--cCCCCHHHHHHHH
Confidence 886554 34455554322 22344444333 3345778999999999999 5577655444443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.40 E-value=3.5e-10 Score=107.65 Aligned_cols=270 Identities=11% Similarity=0.014 Sum_probs=141.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh----hHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCC-CCC----HH
Q 047648 190 NFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVV----TYNILIDGYCKKGGIGKMYKADAVFKDMVENGI-LPN----EV 260 (537)
Q Consensus 190 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~ 260 (537)
......+...|++++|...+++........+.. +++.+...+.. .|++++|...+++...... .++ ..
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC---KGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 344455666777778877777776653222221 33444555555 6777777777766654210 011 12
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHhC----CCC--C-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--C--CH
Q 047648 261 TFNTLIDGFCKDENISAAMKVFEEMGSH----GIA--A-GVVTYNSLINGLCVDGKLDEAVALRDEMMASGLK--P--NV 329 (537)
Q Consensus 261 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~--~~ 329 (537)
++..+...+...|++++|...+++.... +.. | ....+..+...+...|++++|...+++....... + ..
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 2445556666677777777777665432 111 1 1234445556666677777777777666553211 1 12
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HhHHH-----HHHHHHHhcCChHHHHHHHHHHHhCCCCC---CHH
Q 047648 330 VTSNALINGFCKKKLVEKARVLFDDISEQGLSPS-VITYN-----TLIDAYCKEGRMEDAFAMRNSMLDRGVLP---DVS 400 (537)
Q Consensus 330 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~ 400 (537)
.++..+...+...|++++|...+++.......++ ...+. ..+..+...|++++|...+++.......+ ...
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 3455555666666666666666666544311111 01111 12233556666666666666655432211 122
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCh-HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 401 TYNCLIAGLSREGNVEGVRNIMNELVNN----GMRAGL-VTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 401 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
.+..+...+...|++++|...+++.... +.+++. ..+..+..++...|+.++|...++++++
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3445555566666666666666655432 111111 2444455556666666666666666654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.39 E-value=4.3e-10 Score=107.02 Aligned_cols=270 Identities=10% Similarity=-0.008 Sum_probs=148.3
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CCh----hhHHH
Q 047648 156 QLLRALVKEGKFEDVEYVYKEMKRRRIELNLD----SFNFVLNGLCKAGKLNKASDIMEDMKSLGVS-PKV----VTYNI 226 (537)
Q Consensus 156 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~----~~~~~ 226 (537)
.....+...|++++|...+++........+.. +++.+...+...|++++|.+.+++..+.... .+. .++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 33445556677777777777766543222221 3455556666677777777777776643111 111 12344
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC--C--Chh
Q 047648 227 LIDGYCKKGGIGKMYKADAVFKDMVEN----GIL--P-NEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIA--A--GVV 295 (537)
Q Consensus 227 ll~~~~~~~~~~~~~~a~~~~~~~~~~----~~~--p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~--~~~ 295 (537)
+...+.. .|++++|...+++.... +.. | ....+..+...+...|++++|...+++....... + ...
T Consensus 99 la~~~~~---~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 99 QSEILFA---QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHH---CCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 5555666 67777777777666542 111 2 2334555666666777777777777766543211 1 123
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HhH
Q 047648 296 TYNSLINGLCVDGKLDEAVALRDEMMASGLKPN--VVTSN----ALINGFCKKKLVEKARVLFDDISEQGLSPS---VIT 366 (537)
Q Consensus 296 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~ 366 (537)
++..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+++.......+. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 455566666777777777777776654311111 11111 222335567777777777766654322111 223
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047648 367 YNTLIDAYCKEGRMEDAFAMRNSMLDR----GVLPDV-STYNCLIAGLSREGNVEGVRNIMNELVNN 428 (537)
Q Consensus 367 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 428 (537)
+..+...+...|++++|...+++.... +..++. .++..+..++...|+.++|...+++....
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 455666667777777777777666432 211122 24555566666777777777777766654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=3e-11 Score=123.33 Aligned_cols=165 Identities=14% Similarity=0.081 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047648 329 VVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAG 408 (537)
Q Consensus 329 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 408 (537)
...++.+...+.+.|++++|...|++..+..+. +...|..+..+|.+.|++++|+..|++.++..+. +...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 344555555555555555555555555554322 3445555555555555555555555555554333 45555555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCH
Q 047648 409 LSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKL 488 (537)
Q Consensus 409 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 488 (537)
+...|++++|++.|++.++.. +-+...|..+..+|...|++++|++.|++++++. +-+...|..++.+|...|++
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~----P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK----PDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----SCCHHHHHHHHHHHHHTTCC
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCChHHHhhhhhHHHhcccH
Confidence 555555555555555555543 3334555555555666666666666666555432 22445555555566666666
Q ss_pred HHHHHHHHHHHH
Q 047648 489 EDANGLLNELLE 500 (537)
Q Consensus 489 ~~A~~~~~~~~~ 500 (537)
++|.+.++++++
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.38 E-value=7e-11 Score=99.83 Aligned_cols=164 Identities=14% Similarity=0.042 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047648 330 VTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGL 409 (537)
Q Consensus 330 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 409 (537)
..+..+...+...|++++|...++++.+.... +...+..+...+...|++++|...++++.+..+. +...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 34455555666666666666666665544322 4556666666666677777777777666655332 556666666677
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHH
Q 047648 410 SREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLE 489 (537)
Q Consensus 410 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 489 (537)
...|++++|...++++.+.. +.+...+..+..++...|++++|.+.++++++.. +.+..++..++..+...|+++
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~la~~~~~~~~~~ 161 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR----PNEGKVHRAIAFSYEQMGRHE 161 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC----ccchHHHHHHHHHHHHcCCHH
Confidence 77777777777777766653 4456666777777777777777777777776532 335667777777777777777
Q ss_pred HHHHHHHHHHH
Q 047648 490 DANGLLNELLE 500 (537)
Q Consensus 490 ~A~~~~~~~~~ 500 (537)
+|...++++.+
T Consensus 162 ~A~~~~~~~~~ 172 (186)
T 3as5_A 162 EALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777777766
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.7e-10 Score=109.90 Aligned_cols=223 Identities=9% Similarity=0.013 Sum_probs=156.8
Q ss_pred CCCHHHHHHHHHHHHHCCC-CC----CHHHHHHHHHHHhccCCHHHHHHHHHHHHhC----C-CC-CChhhHHHHHHHHH
Q 047648 237 IGKMYKADAVFKDMVENGI-LP----NEVTFNTLIDGFCKDENISAAMKVFEEMGSH----G-IA-AGVVTYNSLINGLC 305 (537)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~-~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~-~~~~~~~~l~~~~~ 305 (537)
.|++++|+..+++....-. .+ ...++..+...|...|+++.|...+++..+. + .. ....+++.+..+|.
T Consensus 114 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~ 193 (378)
T 3q15_A 114 QKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD 193 (378)
T ss_dssp TTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence 6778888887777764310 01 2356677777888888888888888776542 1 01 12456777888888
Q ss_pred hCCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHhHHHHHHHHHH
Q 047648 306 VDGKLDEAVALRDEMMAS----GLK-PNVVTSNALINGFCKKKLVEKARVLFDDISE-----QGLSPSVITYNTLIDAYC 375 (537)
Q Consensus 306 ~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~ 375 (537)
..|++++|.+.+.+..+. +.. ....++..+..+|...|++++|...+++..+ ..+. ...++..+..++.
T Consensus 194 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~ 272 (378)
T 3q15_A 194 DFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSWTLC 272 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHHHHH
Confidence 889999988888877653 111 1234677788888899999999999988876 3322 3667888889999
Q ss_pred hcCChHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhc
Q 047648 376 KEGRMEDAFAMRNSMLDRG----VLPDVSTYNCLIAGLSREGN---VEGVRNIMNELVNNGMRA-GLVTYNILVGALCKD 447 (537)
Q Consensus 376 ~~g~~~~A~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 447 (537)
+.|++++|...+++..+.. .......+..+...+...++ +.+|..++++ .+..| ....+..+...|...
T Consensus 273 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~ 349 (378)
T 3q15_A 273 KAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESS 349 (378)
T ss_dssp HTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHC
Confidence 9999999999999887642 11123355666666777777 6777777665 22222 245667888999999
Q ss_pred CChHHHHHHHHHHHHc
Q 047648 448 GKSKKAVSLLDEMFKM 463 (537)
Q Consensus 448 g~~~~A~~~~~~~~~~ 463 (537)
|++++|.+.|+++++.
T Consensus 350 g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 350 CHFEQAAAFYRKVLKA 365 (378)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999998763
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.36 E-value=9.3e-11 Score=99.05 Aligned_cols=164 Identities=12% Similarity=0.097 Sum_probs=97.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh
Q 047648 297 YNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCK 376 (537)
Q Consensus 297 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 376 (537)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..+. +...+..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHH
Confidence 3444445555555555555555554432 234445555555555566666666666555554322 45555666666666
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHH
Q 047648 377 EGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSL 456 (537)
Q Consensus 377 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 456 (537)
.|++++|...++++.+..+. +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666666655332 55666666666677777777777777666653 34556667777777777777777777
Q ss_pred HHHHHHch
Q 047648 457 LDEMFKME 464 (537)
Q Consensus 457 ~~~~~~~~ 464 (537)
++++++..
T Consensus 167 ~~~~~~~~ 174 (186)
T 3as5_A 167 FKKANELD 174 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHcC
Confidence 77776543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.6e-10 Score=101.49 Aligned_cols=196 Identities=13% Similarity=0.001 Sum_probs=156.2
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047648 257 PNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALI 336 (537)
Q Consensus 257 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll 336 (537)
.|+..+......+...|++++|...|++..+...+++...+..+..++...|++++|++.+++..+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 46688889999999999999999999999887543677888889999999999999999999999864 34667899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCH-------hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHH
Q 047648 337 NGFCKKKLVEKARVLFDDISEQGLSPSV-------ITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPD---VSTYNCLI 406 (537)
Q Consensus 337 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~ 406 (537)
.++...|++++|...+++..+..+. +. ..|..+...+...|++++|...++++++. .|+ ...+..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence 9999999999999999999887543 44 45788888899999999999999999986 344 46777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHch
Q 047648 407 AGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKME 464 (537)
Q Consensus 407 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 464 (537)
.++... +..+++++...+ ..+...|.... ....+.+++|+..|++++++.
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHH-----HHHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 777544 444556666553 33444444433 344567899999999998754
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=8.3e-11 Score=120.12 Aligned_cols=165 Identities=11% Similarity=0.032 Sum_probs=104.4
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 047648 294 VVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDA 373 (537)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 373 (537)
..+|+.+...+.+.|++++|++.|++.++.. +-+...+..+..+|.+.|++++|...|++..+..+. +...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4556666666666666666666666666542 234556666666666666666666666666665433 45566666666
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHH
Q 047648 374 YCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKA 453 (537)
Q Consensus 374 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 453 (537)
|.+.|++++|++.|++.++..+. +...|..+..++...|++++|+..|++.++.. +-+...+..+..++...|++++|
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHH
Confidence 66666666666666666665443 56666666666777777777777777666653 33456666667777777777777
Q ss_pred HHHHHHHHH
Q 047648 454 VSLLDEMFK 462 (537)
Q Consensus 454 ~~~~~~~~~ 462 (537)
.+.++++++
T Consensus 165 ~~~~~kal~ 173 (723)
T 4gyw_A 165 DERMKKLVS 173 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 766666655
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.28 E-value=7.2e-11 Score=107.32 Aligned_cols=230 Identities=17% Similarity=0.077 Sum_probs=156.8
Q ss_pred hccCCHHHHHHHHHHHHh-------CCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc------CC-CCCHHHHHHH
Q 047648 270 CKDENISAAMKVFEEMGS-------HGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMAS------GL-KPNVVTSNAL 335 (537)
Q Consensus 270 ~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~-~~~~~~~~~l 335 (537)
...|++++|+.+|++..+ ...+....++..+...+...|++++|+..+.++.+. +. +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 345677777777766544 222334667888899999999999999999998764 22 2235678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc-----CC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCC-CHHH
Q 047648 336 INGFCKKKLVEKARVLFDDISEQ-----GL--SPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDR------GVLP-DVST 401 (537)
Q Consensus 336 l~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~p-~~~~ 401 (537)
...+...|++++|...+.+..+. +. +.....+..+..+|...|++++|...++++.+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999988764 11 223567888889999999999999999998764 1122 3567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCC-CChHHHHHHHHHHHhcCChHHHHHHHHHHHHch---hcCCCC
Q 047648 402 YNCLIAGLSREGNVEGVRNIMNELVNN-------GMR-AGLVTYNILVGALCKDGKSKKAVSLLDEMFKME---KEKKWP 470 (537)
Q Consensus 402 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~ 470 (537)
+..+...+...|++++|..++++..+. ... .....+..+...+...+....+..+ ..+.... ....+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPY-GEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHH-HHHHHHHHhcCCCCHH
Confidence 888889999999999999999988864 112 2233444444444443333322222 2221110 011122
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 471 NIVTYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 471 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
...++..+..+|...|++++|...+++.++
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456788899999999999999999999876
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=4.2e-10 Score=102.89 Aligned_cols=204 Identities=10% Similarity=-0.079 Sum_probs=130.0
Q ss_pred HHHhCCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CC--CHhHHHHHHH
Q 047648 303 GLCVDGKLDEAVALRDEMMAS----GLKPN-VVTSNALINGFCKKKLVEKARVLFDDISEQGL---SP--SVITYNTLID 372 (537)
Q Consensus 303 ~~~~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~ 372 (537)
.|...|++++|.+.|.+.... |.+++ ..+|+.+..+|...|++++|...+++..+... .+ -..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666667666666665442 21111 34666677777777777777777766654311 01 1346777888
Q ss_pred HHHhc-CChHHHHHHHHHHHhCCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh------HHHHHH
Q 047648 373 AYCKE-GRMEDAFAMRNSMLDRGVLP-D----VSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGL------VTYNIL 440 (537)
Q Consensus 373 ~~~~~-g~~~~A~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l 440 (537)
+|... |++++|+..+++.++..... + ..++..+...+...|++++|+..|++..+....... ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88885 89999988888877642110 1 346778888889999999999999998886422221 156777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHchhcCCCC-CHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCCHH
Q 047648 441 VGALCKDGKSKKAVSLLDEMFKMEKEKKWP-NIVTYNVLIKGFC--QKGKLEDANGLLNELLEKGLIPNQT 508 (537)
Q Consensus 441 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~g~~p~~~ 508 (537)
..++...|++++|+..|++++++.+..... ....+..++.++. ..+++++|+..|+++.. +.|+..
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~--l~~~~~ 274 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR--LDKWKI 274 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC--CCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc--cHHHHH
Confidence 888889999999999999887644321111 1123445566664 35678888888877755 445443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.1e-10 Score=106.23 Aligned_cols=225 Identities=17% Similarity=0.082 Sum_probs=157.9
Q ss_pred CCCHHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC------C-CCCChhhHHHHHH
Q 047648 237 IGKMYKADAVFKDMVE-------NGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSH------G-IAAGVVTYNSLIN 302 (537)
Q Consensus 237 ~~~~~~a~~~~~~~~~-------~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~ 302 (537)
.|++++|+..+++..+ ...+....++..+...+...|++++|...++++... + .+....++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 5666666666666554 222334677888999999999999999999998753 1 1234567888999
Q ss_pred HHHhCCCHHHHHHHHHHHHHc------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHhHHH
Q 047648 303 GLCVDGKLDEAVALRDEMMAS------G-LKPNVVTSNALINGFCKKKLVEKARVLFDDISEQ------GLSP-SVITYN 368 (537)
Q Consensus 303 ~~~~~~~~~~A~~~~~~~~~~------~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~ 368 (537)
.+...|++++|.+.+.++... . .+....++..+...+...|++++|...+++..+. +..| ...++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 999999999999999998764 1 1234577888999999999999999999998764 1122 356788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHH------HHHHHHHHHHHCCCCCCh
Q 047648 369 TLIDAYCKEGRMEDAFAMRNSMLDR-------GVLPD-VSTYNCLIAGLSREGNVE------GVRNIMNELVNNGMRAGL 434 (537)
Q Consensus 369 ~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~p~-~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~ 434 (537)
.+..+|...|++++|...++++.+. ...+. ...+..+...+...+... .+...++.... ..+...
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 252 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVN 252 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHH
Confidence 8999999999999999999998763 11222 223333333333333322 22222222111 112335
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 435 VTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
.++..+...|...|++++|.+.|+++++
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6788899999999999999999999875
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.3e-09 Score=97.91 Aligned_cols=216 Identities=11% Similarity=0.017 Sum_probs=131.6
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C-CHhHH
Q 047648 293 GVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPN---VVTSNALINGFCKKKLVEKARVLFDDISEQGLS-P-SVITY 367 (537)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~ 367 (537)
+...+..+...+.+.|++++|+..|+++.+.. +.+ ...+..+..++...|++++|...|++..+..+. | ....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 44555566666777777777777777776643 122 455666666777777777777777776665321 1 13345
Q ss_pred HHHHHHHHh--------cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHH
Q 047648 368 NTLIDAYCK--------EGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNI 439 (537)
Q Consensus 368 ~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 439 (537)
..+..++.. .|++++|...|+++++..+. +......+.. +..+... -...+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~--------------~~~~~~~----~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQK--------------IRELRAK----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHH--------------HHHHHHH----HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHH--------------HHHHHHH----HHHHHHH
Confidence 556666666 66677777777766654322 1111111110 0000000 0112456
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCCH--
Q 047648 440 LVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQK----------GKLEDANGLLNELLEKGLIPNQ-- 507 (537)
Q Consensus 440 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~g~~p~~-- 507 (537)
+...|.+.|++++|+..|+++++..+. .......+..+..+|... |++++|...++++++. .|+.
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~ 230 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPD-TPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDSPL 230 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTCTH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCC-CchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCChH
Confidence 788899999999999999999864322 111356777888888866 8899999999999984 4654
Q ss_pred --HhHHHHHHHHHhcCCcCCccCCCC
Q 047648 508 --TTYQIVREEMMEKGFIPDIEGHMY 531 (537)
Q Consensus 508 --~~~~~l~~~~~~~g~~~~a~~~l~ 531 (537)
.....+...+.+.|.++++....+
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~~~~~~~ 256 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEGDASLAQ 256 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTCCC
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHhh
Confidence 345555666667777666655443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.19 E-value=3.6e-08 Score=96.56 Aligned_cols=374 Identities=9% Similarity=-0.068 Sum_probs=229.7
Q ss_pred CCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCC-hhHHHHHHHHHHhC-CC-CCCHHHHHHHHHHHH----hcCCh
Q 047648 130 MKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGK-FEDVEYVYKEMKRR-RI-ELNLDSFNFVLNGLC----KAGKL 202 (537)
Q Consensus 130 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~----~~g~~ 202 (537)
|+++.+.++|++.+.. .|++..|...+....+.+. .+....+|+..... |. ..+...|...+..+. ..|+.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 7889999999998874 4688888888887777663 45677778776653 43 236677777776643 34677
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCC----------CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 047648 203 NKASDIMEDMKSLGVSPKVVTYNILIDGYCKKG----------GIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKD 272 (537)
Q Consensus 203 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~----------~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 272 (537)
+.+.++|++.+......-...|......-...+ ..+.+..|..+++.+...-...+...|...+..-...
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~ 185 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMEN 185 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcC
Confidence 888899998887421111122222211110000 0112223333333333210001333555555543222
Q ss_pred C-------CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 047648 273 E-------NISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLV 345 (537)
Q Consensus 273 g-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 345 (537)
+ ..+.+..+|+++... .+.+...|...+..+.+.|+++.|..++++.... +.+...+. .|....+.
T Consensus 186 ~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~ 258 (493)
T 2uy1_A 186 GMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDE 258 (493)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTC
T ss_pred CccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcch
Confidence 1 134567889888775 3446778888888888999999999999999987 33333322 22222121
Q ss_pred HHHHHHHHHHHHcC------------CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-c
Q 047648 346 EKARVLFDDISEQG------------LSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSR-E 412 (537)
Q Consensus 346 ~~a~~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~ 412 (537)
++. ++.+.+.- .......|...+....+.+..+.|..+|++. .. ...+...|......-.. .
T Consensus 259 ~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~ 333 (493)
T 2uy1_A 259 EAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYAT 333 (493)
T ss_dssp THH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHH
T ss_pred hHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHC
Confidence 221 22222210 0112245666777777788899999999999 32 22345555433322222 3
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047648 413 GNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDAN 492 (537)
Q Consensus 413 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 492 (537)
++.+.|..+|+...+.. +.++..+...++...+.|+.+.|+.+|+++. .....|...+..-...|+.+.+.
T Consensus 334 ~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~--------k~~~lw~~~~~fE~~~G~~~~~r 404 (493)
T 2uy1_A 334 GSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE--------KTSRMWDSMIEYEFMVGSMELFR 404 (493)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--------CBHHHHHHHHHHHHHHSCHHHHH
T ss_pred CChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HHHHHHHHHHHHHHHCCCHHHHH
Confidence 36999999999998863 3345566777888889999999999999872 36788888888878889999999
Q ss_pred HHHHHHHHc--C---CCCC------------HHhHHHHHHHHHhcCCcCCc
Q 047648 493 GLLNELLEK--G---LIPN------------QTTYQIVREEMMEKGFIPDI 526 (537)
Q Consensus 493 ~~~~~~~~~--g---~~p~------------~~~~~~l~~~~~~~g~~~~a 526 (537)
.+++++.+. + -.|- ..++..++..|.-....+..
T Consensus 405 ~v~~~~~~~~~~~~~~~~~~~~~~~~~fe~~~g~l~~~~~~~~~~~~~~~~ 455 (493)
T 2uy1_A 405 ELVDQKMDAIKADAILPPLPPREHNVQMEGILGRYHCFLDSFNFLDLKIRD 455 (493)
T ss_dssp HHHHHHHHHHHTTCCBCCCCCC--CCCCCHHHHHHHHHHHHHCBTTBCCCC
T ss_pred HHHHHHHHHhcccccCCcccccccHHHHHHHhhhHHHHHHHhhhhccccCC
Confidence 999988752 1 1111 25677788887665555544
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1.9e-09 Score=85.37 Aligned_cols=130 Identities=15% Similarity=0.236 Sum_probs=95.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 047648 366 TYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALC 445 (537)
Q Consensus 366 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 445 (537)
.|..+...+...|++++|..+++++.+..+. +...+..+...+...|++++|..+++++.+.+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 4556677777777777777777777765433 56677777777777788888888888777654 445667777788888
Q ss_pred hcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 446 KDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEK 501 (537)
Q Consensus 446 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (537)
..|++++|.+.++++.+.. +.+..++..++..+...|++++|...++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD----PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 8888888888888877532 335677777888888888888888888888763
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.8e-09 Score=93.10 Aligned_cols=188 Identities=11% Similarity=0.022 Sum_probs=119.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 047648 297 YNSLINGLCVDGKLDEAVALRDEMMASGLKPNV-VTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYC 375 (537)
Q Consensus 297 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 375 (537)
+......+...|++++|+..|++..+. .|+. ..+.. ...... ..........+..+|.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-----~~~~~~--------------~~~~~~~~~~lg~~~~ 65 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYW-----TNVDKN--------------SEISSKLATELALAYK 65 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHH-----HHSCTT--------------SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHH-----hhhcch--------------hhhhHHHHHHHHHHHH
Confidence 334445566777777777777777664 2322 22211 000000 0001222334777888
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC--hHHH
Q 047648 376 KEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGK--SKKA 453 (537)
Q Consensus 376 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A 453 (537)
+.|++++|...+++.++..+. +...+..+..++...|++++|...|++.++.. |.+..++..+..+|...|+ .+.+
T Consensus 66 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~ 143 (208)
T 3urz_A 66 KNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKL 143 (208)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHH
Confidence 888888888888888887655 77888888888888888888888888888875 4567788888887766554 3445
Q ss_pred HHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 047648 454 VSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVR 514 (537)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 514 (537)
...++.+.. ..|....+.....++...|++++|+..|++.++ +.|+......+.
T Consensus 144 ~~~~~~~~~-----~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~ 197 (208)
T 3urz_A 144 ETDYKKLSS-----PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLD 197 (208)
T ss_dssp HHHHC---C-----CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHH
T ss_pred HHHHHHHhC-----CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 555655531 122333444556667778889999999999887 667766554443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=4e-09 Score=96.32 Aligned_cols=206 Identities=11% Similarity=0.008 Sum_probs=138.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhCCCHHHH
Q 047648 239 KMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSH----GIAA-GVVTYNSLINGLCVDGKLDEA 313 (537)
Q Consensus 239 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A 313 (537)
++++|...+.+. ...|...|++++|...|.+.... |-++ ...+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 466676666654 23455677777777777766442 2111 145677777788888888888
Q ss_pred HHHHHHHHHcCC---CC--CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCC-C----HhHHHHHHHHHHhcCChHH
Q 047648 314 VALRDEMMASGL---KP--NVVTSNALINGFCKK-KLVEKARVLFDDISEQGLSP-S----VITYNTLIDAYCKEGRMED 382 (537)
Q Consensus 314 ~~~~~~~~~~~~---~~--~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~ 382 (537)
+..+++..+... .+ -..++..+...|... |++++|...|++..+..... + ..++..+...+.+.|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 888877665310 11 134677788888885 99999999988876642110 1 3467788889999999999
Q ss_pred HHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh------HHHHHHHHHHH--hcC
Q 047648 383 AFAMRNSMLDRGVLPDV------STYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGL------VTYNILVGALC--KDG 448 (537)
Q Consensus 383 A~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~--~~g 448 (537)
|+..+++..+..+.... ..|..+..++...|++++|...|++..+.. |+. ..+..++.++. ..+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED--PNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 99999999886543221 256777888889999999999999887642 321 23444556664 456
Q ss_pred ChHHHHHHHHHHH
Q 047648 449 KSKKAVSLLDEMF 461 (537)
Q Consensus 449 ~~~~A~~~~~~~~ 461 (537)
++++|++.|+++.
T Consensus 255 ~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 255 QLSEHCKEFDNFM 267 (292)
T ss_dssp THHHHHHHHTTSS
T ss_pred HHHHHHHHhccCC
Confidence 6888888887664
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.14 E-value=3.1e-08 Score=88.74 Aligned_cols=180 Identities=11% Similarity=0.079 Sum_probs=112.9
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhCCCHHHHHHHHHHHH
Q 047648 243 ADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGI-AAGVVTYNSLINGLCVDGKLDEAVALRDEMM 321 (537)
Q Consensus 243 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 321 (537)
|+..|++....+ .++..++..+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455666665543 34555556677777777888888888877765542 1255666677777888888888888888877
Q ss_pred HcCCCC-----CHHHHHHHHHHHH--h--cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047648 322 ASGLKP-----NVVTSNALINGFC--K--KKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLD 392 (537)
Q Consensus 322 ~~~~~~-----~~~~~~~ll~~~~--~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 392 (537)
+. .| +..+...++.++. . .++..+|..+|+++.+.. |+..+-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~--p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF--PTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS--CSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC--CCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 64 45 2455555554522 2 237788888888876542 3322333344477778888888888876554
Q ss_pred CC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047648 393 RG---------VLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNG 429 (537)
Q Consensus 393 ~~---------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 429 (537)
.. -+-|+.++..++......|+ +|.++++++.+..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 21 02256666555555555665 7778888887763
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.10 E-value=3.3e-08 Score=88.50 Aligned_cols=245 Identities=10% Similarity=0.038 Sum_probs=144.3
Q ss_pred HHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 047648 124 LAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLN 203 (537)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 203 (537)
+-..-.|++..++.-...+. ..........+.+++...|+++.. ....|....+..+...+ ..+
T Consensus 21 kn~fy~G~yq~~i~e~~~~~---~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFS---KVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSS---CCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT---
T ss_pred HHHHHhhHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc---
Confidence 33444677777766332221 122223333445677777776642 11233433444444333 222
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccCCHHHHHHHH
Q 047648 204 KASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGI-LPNEVTFNTLIDGFCKDENISAAMKVF 282 (537)
Q Consensus 204 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~ 282 (537)
|+..|+++.+.+ .++..++..+..++.. .|++++|++++.+....|. .-+...+..++..+.+.|+.+.|.+.+
T Consensus 85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~---~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l 159 (310)
T 3mv2_B 85 -NIEELENLLKDK-QNSPYELYLLATAQAI---LGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIF 159 (310)
T ss_dssp -CCHHHHHTTTTS-CCCHHHHHHHHHHHHH---HTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -HHHHHHHHHhcC-CCCcHHHHHHHHHHHH---cCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 667777766554 3455555667777777 7888888888877765543 125566777777888888888888888
Q ss_pred HHHHhCCCCC-----ChhhHHHHHHH--HHh--CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047648 283 EEMGSHGIAA-----GVVTYNSLING--LCV--DGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFD 353 (537)
Q Consensus 283 ~~~~~~~~~~-----~~~~~~~l~~~--~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 353 (537)
+.|.+. .| +..+...++.+ ... .+++.+|..+|+++.+. .|+..+...++.++.+.|++++|...++
T Consensus 160 ~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 160 DNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHH
Confidence 888664 34 24444555544 222 33788888888887654 3443333444447778888888888887
Q ss_pred HHHHcC---------CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 047648 354 DISEQG---------LSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGV 395 (537)
Q Consensus 354 ~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 395 (537)
.+.+.. -+.++.++..++......|+ +|.+++.++.+..+
T Consensus 236 ~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 236 LLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp HHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred HHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 665431 02255566455555555565 77788888877643
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.10 E-value=6.2e-09 Score=89.74 Aligned_cols=190 Identities=11% Similarity=0.044 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047648 259 EVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAG-VVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALIN 337 (537)
Q Consensus 259 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 337 (537)
...+......+...|++++|+..|++..... |+ ...|... .... ...........+..
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~-----~~~~--------------~~~~~~~~~~~lg~ 62 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWT-----NVDK--------------NSEISSKLATELAL 62 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHH-----HSCT--------------TSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHh-----hhcc--------------hhhhhHHHHHHHHH
Confidence 4445556677889999999999999998752 32 2223220 0000 00111223345667
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--H
Q 047648 338 GFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGN--V 415 (537)
Q Consensus 338 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~--~ 415 (537)
++.+.|++++|...|++..+..+. +...+..+..++...|++++|...|+++++..+. +..++..+..+|...|+ .
T Consensus 63 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~ 140 (208)
T 3urz_A 63 AYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEK 140 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHH
Confidence 777778888888888877776544 6677777788888888888888888888776544 66777777777655443 3
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHH
Q 047648 416 EGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVL 478 (537)
Q Consensus 416 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 478 (537)
+.+...++.... ..|....+.....++...|++++|+..|+++++ ..|+......+
T Consensus 141 ~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~-----l~P~~~~~~~l 196 (208)
T 3urz_A 141 KKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL-----RFPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT-----TSCCHHHHHHH
T ss_pred HHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hCCCHHHHHHH
Confidence 344455544432 123233344456666777888888888888864 24565444333
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.09 E-value=9.4e-09 Score=81.31 Aligned_cols=128 Identities=16% Similarity=0.193 Sum_probs=79.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 047648 332 SNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSR 411 (537)
Q Consensus 332 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 411 (537)
+..+...+...|++++|..+++++.+.+.. +...+..+...+...|++++|...++++...++. +...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHH
Confidence 444555556666666666666666554322 4555555666666666666666666666654332 45566666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 412 EGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 412 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
.|++++|...++++.+.. +.+...+..++..+...|++++|.+.++++++
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 777777777776666653 34456666667777777777777777776654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.08 E-value=3.7e-09 Score=108.52 Aligned_cols=174 Identities=14% Similarity=-0.019 Sum_probs=132.7
Q ss_pred HhCCCHHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh
Q 047648 305 CVDGKLDEAVALRDEMM--------ASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCK 376 (537)
Q Consensus 305 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 376 (537)
...|++++|++.++++. +.. +.+...+..+..++...|++++|...|+++.+.++. +...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 67888888888888887 332 345567778888888888888888888888876544 67788888888888
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHH
Q 047648 377 EGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSL 456 (537)
Q Consensus 377 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 456 (537)
.|++++|...|++.++..+. +...+..+..++...|++++ +..|++..+.+ +.+...|..+..++.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888888888877554 67778888888888888888 88888888765 45677888888888888888888888
Q ss_pred HHHHHHchhcCCCCCHHHHHHHHHHHHhcCC
Q 047648 457 LDEMFKMEKEKKWPNIVTYNVLIKGFCQKGK 487 (537)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 487 (537)
|++++++. +.+...|..+..++...++
T Consensus 557 ~~~al~l~----P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTS----RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTS----TTHHHHHHHHHHHTC----
T ss_pred HHhhcccC----cccHHHHHHHHHHHHccCC
Confidence 88886432 2246677777777766554
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.4e-07 Score=85.35 Aligned_cols=229 Identities=11% Similarity=0.036 Sum_probs=165.9
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----Hhc---CCH
Q 047648 275 ISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDG--KLDEAVALRDEMMASGLKPNVVTSNALINGF----CKK---KLV 345 (537)
Q Consensus 275 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~---~~~ 345 (537)
.++|+++++.++..+. -+...|+.--.++...| ++++++++++.+.... +-+..+|+.-...+ ... +++
T Consensus 49 s~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCH
Confidence 3567777777766532 24455666666666667 7888888888877754 23344454443333 444 678
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC------HHH
Q 047648 346 EKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRME--DAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGN------VEG 417 (537)
Q Consensus 346 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~------~~~ 417 (537)
++++.+++.+.+..++ +..+|+.-.-++.+.|.++ ++++.++++++.++. |...|+.....+...+. +++
T Consensus 127 ~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHH
Confidence 8888888888887655 7788887777777888887 889999999888776 88888887777777776 888
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHH-HHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047648 418 VRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKK-AVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLN 496 (537)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 496 (537)
+++.+.+++... +-|...|+.+...+.+.|+... +..+.+++.+... .-+.++..+..++.+|.+.|+.++|+++++
T Consensus 205 El~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 205 ELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEK-DQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGG-TEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 999999888875 6778889888888888888444 5556666654321 124577889999999999999999999999
Q ss_pred HHHHcCCCCCHHhH
Q 047648 497 ELLEKGLIPNQTTY 510 (537)
Q Consensus 497 ~~~~~g~~p~~~~~ 510 (537)
.+.+. +.|...-|
T Consensus 283 ~l~~~-~Dpir~~y 295 (306)
T 3dra_A 283 LLKSK-YNPIRSNF 295 (306)
T ss_dssp HHHHT-TCGGGHHH
T ss_pred HHHhc-cChHHHHH
Confidence 98763 44654433
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=8.4e-10 Score=89.54 Aligned_cols=121 Identities=7% Similarity=-0.048 Sum_probs=61.2
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHH
Q 047648 374 YCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKA 453 (537)
Q Consensus 374 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 453 (537)
+...|++++|+..++......+. +...+..+...|.+.|++++|++.|++.++.. +.+..+|..+..+|...|++++|
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence 33445555555555554443211 23334445555555555555555555555543 33455555555555555555555
Q ss_pred HHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHH
Q 047648 454 VSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGL-LNELLE 500 (537)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~ 500 (537)
+..|++++++. +-+..+|..+...|.+.|++++|.+. +++.++
T Consensus 85 ~~~~~~al~~~----p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 85 VECYRRSVELN----PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHC----TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 55555555432 22445555555555555555544433 355555
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.2e-08 Score=91.62 Aligned_cols=101 Identities=10% Similarity=-0.038 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--CCCHHHH
Q 047648 258 NEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAG---VVTYNSLINGLCVDGKLDEAVALRDEMMASGL--KPNVVTS 332 (537)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~ 332 (537)
+...+..+...+.+.|++++|...|+++.+... .+ ...+..+..++...|++++|+..|+++.+... +.....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 445555666666677777777777777766421 12 45566666677777777777777777766421 1123455
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHHcC
Q 047648 333 NALINGFCK--------KKLVEKARVLFDDISEQG 359 (537)
Q Consensus 333 ~~ll~~~~~--------~~~~~~a~~~~~~~~~~~ 359 (537)
..+..++.. .|++++|...|+++.+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 127 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY 127 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC
Confidence 556666666 777777777777776653
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.05 E-value=1.2e-08 Score=104.67 Aligned_cols=174 Identities=10% Similarity=-0.036 Sum_probs=143.1
Q ss_pred hccCCHHHHHHHHHHHH--------hCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 047648 270 CKDENISAAMKVFEEMG--------SHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCK 341 (537)
Q Consensus 270 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 341 (537)
...|++++|++.+++.. +. -+.+...+..+..++...|++++|++.|+++.+.. +.+...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 77899999999999987 33 23456778888899999999999999999998864 4567888899999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047648 342 KKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNI 421 (537)
Q Consensus 342 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 421 (537)
.|++++|...|++..+..+. +...+..+..++.+.|++++ ...|++.++.++. +...|..+..++...|++++|...
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999887554 67788889999999999999 9999999987655 788899999999999999999999
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHHhcCC
Q 047648 422 MNELVNNGMRAGLVTYNILVGALCKDGK 449 (537)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 449 (537)
|++..+.+ +.+...+..+..++...|+
T Consensus 557 ~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 99988764 3346677778888766555
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=7.8e-09 Score=94.07 Aligned_cols=169 Identities=12% Similarity=-0.009 Sum_probs=117.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH-HH
Q 047648 326 KPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTY-NC 404 (537)
Q Consensus 326 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~ 404 (537)
+.+...+..+...+...|++++|...|++..+..+. +...+..+..++.+.|++++|...++++....+ +.... ..
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p--~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ--DTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC--SHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc--chHHHHHH
Confidence 344556666777777788888888888887776544 566777777888888888888888887766533 33322 22
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHh
Q 047648 405 LIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQ 484 (537)
Q Consensus 405 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 484 (537)
....+...++.+.|...+++..+.. +.+...+..+...+...|++++|++.|+++++..+. ..+...+..++..+..
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~--~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT--AADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--GGGGHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc--cccchHHHHHHHHHHH
Confidence 2233556667777777787777764 556777778888888888888888888888763321 2236677888888888
Q ss_pred cCCHHHHHHHHHHHHH
Q 047648 485 KGKLEDANGLLNELLE 500 (537)
Q Consensus 485 ~g~~~~A~~~~~~~~~ 500 (537)
.|+.++|...+++.+.
T Consensus 268 ~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 268 LGTGDALASXYRRQLY 283 (287)
T ss_dssp HCTTCHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHH
Confidence 8888888877777653
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.04 E-value=4e-08 Score=84.85 Aligned_cols=177 Identities=14% Similarity=0.040 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC----ChHHHHHHH
Q 047648 312 EAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEG----RMEDAFAMR 387 (537)
Q Consensus 312 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~ 387 (537)
+|++.|++..+.| +...+..+...|...+++++|...|++..+.| ++..+..+...|.. + ++++|...|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3555666666543 55566666666666777777777777776654 45566666666666 5 677777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CChHHHHHHHHHHHh----cCChHHHHHHHH
Q 047648 388 NSMLDRGVLPDVSTYNCLIAGLSR----EGNVEGVRNIMNELVNNGMR-AGLVTYNILVGALCK----DGKSKKAVSLLD 458 (537)
Q Consensus 388 ~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 458 (537)
++..+.| ++..+..+...|.. .+++++|...|++..+.+.. ..+..+..|...|.. .+++++|+..|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7776654 56666667776765 67788888888877776521 125677777777777 778888888888
Q ss_pred HHHHchhcCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcCC
Q 047648 459 EMFKMEKEKKWPNIVTYNVLIKGFCQK-G-----KLEDANGLLNELLEKGL 503 (537)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~g~ 503 (537)
++.+. ..+...+..|...|... | ++++|...|++..+.|.
T Consensus 154 ~A~~~-----~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSL-----SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHT-----SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHc-----CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88752 23445666777777643 3 78888888888888764
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.3e-09 Score=88.50 Aligned_cols=146 Identities=12% Similarity=-0.010 Sum_probs=118.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 047648 335 LINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGN 414 (537)
Q Consensus 335 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 414 (537)
|...+...|++++|+..+.......+. +...+..+...|.+.|++++|.+.|++.++..+. +..+|..+..++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCc
Confidence 344556678899999999887664222 4556678999999999999999999999998766 88999999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHH-HHHHHHchhcCCCCCHHHHHHHHHHHHhcCC
Q 047648 415 VEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSL-LDEMFKMEKEKKWPNIVTYNVLIKGFCQKGK 487 (537)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 487 (537)
+++|+..|++.++.. +.+..++..+...|.+.|++++|.+. +++++++. +.++.+|......+...|+
T Consensus 81 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~----P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF----PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS----TTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC----cCCHHHHHHHHHHHHHhCc
Confidence 999999999999975 55688999999999999999876665 58888754 3477888888777777775
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.03 E-value=3.9e-09 Score=88.30 Aligned_cols=160 Identities=11% Similarity=0.010 Sum_probs=77.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhc
Q 047648 334 ALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAG-LSRE 412 (537)
Q Consensus 334 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~ 412 (537)
.....+...|++++|...|++..+..+. +...+..+..++...|++++|...++++....+ ++..+..+... +...
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHhh
Confidence 3344445555555555555554443222 344455555555555555555555555544322 22222211111 1111
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047648 413 GNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDAN 492 (537)
Q Consensus 413 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 492 (537)
+....+...+++..+.. +.+...+..+..++...|++++|+..|+++++..+. ..+...+..+..++...|+.++|.
T Consensus 88 ~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 88 AAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLG--AQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT--TTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred cccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc--cChHHHHHHHHHHHHHhCCCCcHH
Confidence 12223455555555543 334555566666666666666666666666542211 112445556666666666666666
Q ss_pred HHHHHHH
Q 047648 493 GLLNELL 499 (537)
Q Consensus 493 ~~~~~~~ 499 (537)
..|++.+
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665554
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.01 E-value=2.5e-07 Score=83.82 Aligned_cols=226 Identities=11% Similarity=-0.004 Sum_probs=132.6
Q ss_pred HHHHHcCCc-hHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCC--ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH----
Q 047648 124 LAYVKNMKP-HLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEG--KFEDVEYVYKEMKRRRIELNLDSFNFVLNGL---- 196 (537)
Q Consensus 124 ~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---- 196 (537)
++..+.|.+ ++|++.++.++..+ |-+..+|+.--..+...| +++++++.++.+....++ +..+|+.-...+
T Consensus 40 ~a~~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~ 117 (306)
T 3dra_A 40 LALMKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIM 117 (306)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHH
Confidence 333444444 57888888888764 335666777777777777 788888888887776544 566666554444
Q ss_pred Hhc---CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 047648 197 CKA---GKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMY--KADAVFKDMVENGILPNEVTFNTLIDGFCK 271 (537)
Q Consensus 197 ~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~--~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 271 (537)
... +++++++++++++.+... -+..+|+.-.-++.+ .+.++ ++++.++++.+.+.. |..+|+.....+.+
T Consensus 118 ~~l~~~~~~~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~---l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~ 192 (306)
T 3dra_A 118 ELNNNDFDPYREFDILEAMLSSDP-KNHHVWSYRKWLVDT---FDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFS 192 (306)
T ss_dssp HHTTTCCCTHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH---TTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHS
T ss_pred HhccccCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH---hcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 444 677777777777777642 366666666666666 55555 777777777766544 66666665555555
Q ss_pred cCC------HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHhc
Q 047648 272 DEN------ISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDE-AVALRDEMMASG--LKPNVVTSNALINGFCKK 342 (537)
Q Consensus 272 ~g~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~ 342 (537)
.+. ++++++.++.++...+ -|...|+.+-..+.+.|+... +..+..++.+.+ -+.++..+..+...+.+.
T Consensus 193 l~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~ 271 (306)
T 3dra_A 193 KKHLATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQ 271 (306)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHT
T ss_pred ccccchhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcc
Confidence 554 5566666665555432 255555555555555554322 333333333211 122344455555555555
Q ss_pred CCHHHHHHHHHHHHH
Q 047648 343 KLVEKARVLFDDISE 357 (537)
Q Consensus 343 ~~~~~a~~~~~~~~~ 357 (537)
|+.++|.++++.+.+
T Consensus 272 ~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 272 KKYNESRTVYDLLKS 286 (306)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 555555555555543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.01 E-value=4e-08 Score=85.79 Aligned_cols=189 Identities=10% Similarity=-0.015 Sum_probs=120.5
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--hHHH
Q 047648 293 GVVTYNSLINGLCVDGKLDEAVALRDEMMASGLK-P-NVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSV--ITYN 368 (537)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 368 (537)
+...+..+...+.+.|++++|+..|+++.+.... + ....+..+..++.+.|++++|...|+++.+..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3445666677788889999999999988875311 1 1356777888888899999999999988876443221 2344
Q ss_pred HHHHHHHh------------------cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 047648 369 TLIDAYCK------------------EGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGM 430 (537)
Q Consensus 369 ~l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 430 (537)
.+..++.. .|++++|...|+++++..+. +...+....... .+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~----------~~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLV----------FLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHH----------HHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHH----------HHHHHH-----
Confidence 45555544 34555555555555554222 111111110000 000000
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 047648 431 RAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWP-NIVTYNVLIKGFCQKGKLEDANGLLNELLEKG 502 (537)
Q Consensus 431 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 502 (537)
......+...|.+.|++++|+..|+++++..+. .| ....+..+..+|.+.|++++|.+.++.+...+
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPD--TQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT--SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcC--CCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 011134667889999999999999999874321 11 23678889999999999999999999998854
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.4e-08 Score=102.39 Aligned_cols=153 Identities=7% Similarity=-0.117 Sum_probs=101.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 047648 307 DGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAM 386 (537)
Q Consensus 307 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 386 (537)
.|++++|++.++++.+.. +.+...+..+...+...|++++|...+++..+.... +...+..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 467778888888777653 345677777778888888888888888887776433 566777778888888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc---CChHHHHHHHHHHHHc
Q 047648 387 RNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKD---GKSKKAVSLLDEMFKM 463 (537)
Q Consensus 387 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 463 (537)
+++..+..+. +...+..+..++...|++++|.+.+++..+.. +.+...+..+..++... |++++|.+.++++++.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 8887776544 66777778888888888888888888877764 44567777777888887 8888888888887763
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.1e-08 Score=85.52 Aligned_cols=162 Identities=10% Similarity=0.032 Sum_probs=101.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH-HH
Q 047648 297 YNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDA-YC 375 (537)
Q Consensus 297 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 375 (537)
+......+...|++++|+..++++.+.. +.+...+..+..++...|++++|...++++.+..+ +...+...... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHH
Confidence 4445556666677777777776665532 33455666666667777777777777766655432 33322222111 11
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHHhcCChHHHH
Q 047648 376 KEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRA-GLVTYNILVGALCKDGKSKKAV 454 (537)
Q Consensus 376 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~ 454 (537)
..+....|...+++..+..+. +...+..+...+...|++++|...|+++.+....+ +...+..+..++...|+.++|.
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 222334467777777765444 67777778888888888888888888877764322 2457777788888888888888
Q ss_pred HHHHHHHH
Q 047648 455 SLLDEMFK 462 (537)
Q Consensus 455 ~~~~~~~~ 462 (537)
..|++.+.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877653
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.97 E-value=2.7e-08 Score=91.52 Aligned_cols=189 Identities=7% Similarity=-0.086 Sum_probs=104.9
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C-CC--CHhHHHHHHH
Q 047648 303 GLCVDGKLDEAVALRDEMMASGL---KP--NVVTSNALINGFCKKKLVEKARVLFDDISEQG--L-SP--SVITYNTLID 372 (537)
Q Consensus 303 ~~~~~~~~~~A~~~~~~~~~~~~---~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~-~~--~~~~~~~l~~ 372 (537)
.|...|++++|...|.+...... .+ -..+|..+...|...|++++|...|++..+.. . .+ ...++..+..
T Consensus 45 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 124 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGK 124 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455666666665555443210 00 12355555666666666666666666554321 0 11 1245566666
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCC---C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-hHHHHHHHH
Q 047648 373 AYCKEGRMEDAFAMRNSMLDRGVL---P--DVSTYNCLIAGLSREGNVEGVRNIMNELVNN----GMRAG-LVTYNILVG 442 (537)
Q Consensus 373 ~~~~~g~~~~A~~~~~~~~~~~~~---p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~ 442 (537)
+|.. |++++|+..+++.++.... + ...++..+...+...|++++|+..|++..+. +..+. ...+..++.
T Consensus 125 ~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~ 203 (307)
T 2ifu_A 125 LMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVL 203 (307)
T ss_dssp HHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Confidence 6766 7777777777776543111 0 1346667777777888888888888777653 11111 225566666
Q ss_pred HHHhcCChHHHHHHHHHHHHchhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 047648 443 ALCKDGKSKKAVSLLDEMFKMEKEKKWP-NIVTYNVLIKGFCQKGKLEDANGL 494 (537)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 494 (537)
++...|++++|...|++++ +.+..... .......++.++ ..|+.+.+..+
T Consensus 204 ~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 204 VQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 7777788888888888876 43221111 112344444444 56666655553
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2.6e-08 Score=90.54 Aligned_cols=164 Identities=12% Similarity=0.019 Sum_probs=93.0
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHH-HHHHH
Q 047648 294 VVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITY-NTLID 372 (537)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~ 372 (537)
...+..+...+.+.|++++|...|+++.... +.+...+..+...+...|++++|...++++.... |+.... .....
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~ 193 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHH
Confidence 3444445555555666666666666655542 2344555555666666666666666666554442 222221 12222
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CChHHHHHHHHHHHhcCChH
Q 047648 373 AYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMR-AGLVTYNILVGALCKDGKSK 451 (537)
Q Consensus 373 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~ 451 (537)
.+.+.++.+.|...+++..+..+. +...+..+...+...|++++|...|+++++.... .+...+..++..+...|+.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 344555666666666666665443 5666666666666677777777777666665311 11456666777777777777
Q ss_pred HHHHHHHHHH
Q 047648 452 KAVSLLDEMF 461 (537)
Q Consensus 452 ~A~~~~~~~~ 461 (537)
+|...|++.+
T Consensus 273 ~a~~~~r~al 282 (287)
T 3qou_A 273 ALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 7776666654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2.2e-08 Score=100.90 Aligned_cols=165 Identities=13% Similarity=-0.003 Sum_probs=125.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047648 272 DENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVL 351 (537)
Q Consensus 272 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 351 (537)
.|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..++...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478999999999988763 3367889999999999999999999999999864 45678899999999999999999999
Q ss_pred HHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHC
Q 047648 352 FDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSRE---GNVEGVRNIMNELVNN 428 (537)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 428 (537)
+++..+.... +...+..+..+|.+.|++++|.+.+++..+..+. +...+..+...+... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999887544 6788999999999999999999999999987654 788899999999999 9999999999999987
Q ss_pred CCCCChHHHHHHH
Q 047648 429 GMRAGLVTYNILV 441 (537)
Q Consensus 429 ~~~~~~~~~~~l~ 441 (537)
+ +.+...+..+.
T Consensus 158 ~-p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 G-VGAVEPFAFLS 169 (568)
T ss_dssp T-CCCSCHHHHTT
T ss_pred C-CcccChHHHhC
Confidence 5 33344444443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.95 E-value=2.1e-06 Score=84.06 Aligned_cols=331 Identities=12% Similarity=-0.012 Sum_probs=187.7
Q ss_pred chHHHHHHHHHHHHHcCC-chHHHHHHHHHhhC-CC-CCChhhHHHHHHHHH----hCCChhHHHHHHHHHHhCCCCCCH
Q 047648 114 RNSIIIDMLMLAYVKNMK-PHLGFEAFKRAGDY-GL-KSSVLSCNQLLRALV----KEGKFEDVEYVYKEMKRRRIELNL 186 (537)
Q Consensus 114 ~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~-~~-~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~ 186 (537)
|+..+|...+....+.++ .+....+|+.++.. |. +.+...|...+..+. ..++.+.+..+|+..+......-.
T Consensus 45 ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~ 124 (493)
T 2uy1_A 45 YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLS 124 (493)
T ss_dssp CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHH
T ss_pred CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHH
Confidence 345555555555544442 23445555555442 21 224455555554432 124455566666666553211111
Q ss_pred HHHHHHHHHHH-------------hcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCC-CCCC---HHHHHHHHHH
Q 047648 187 DSFNFVLNGLC-------------KAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKG-GIGK---MYKADAVFKD 249 (537)
Q Consensus 187 ~~~~~l~~~~~-------------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~---~~~a~~~~~~ 249 (537)
..|......-. ..+.+..|..+++.+...-...+...|...+.--...+ ...+ ...+..+|++
T Consensus 125 ~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~ 204 (493)
T 2uy1_A 125 ELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNY 204 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHH
Confidence 11221111100 11223344444444432100013345555554432210 0111 3456778888
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcC-----
Q 047648 250 MVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASG----- 324 (537)
Q Consensus 250 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----- 324 (537)
+.... +-+...|...+..+.+.|+++.|..+|++.... +.+...|.. |....+.++. ++.+.+.-
T Consensus 205 al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~~~~ 274 (493)
T 2uy1_A 205 ILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSMGEA 274 (493)
T ss_dssp HHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC----
T ss_pred HHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHhhcc
Confidence 88753 346778888888888999999999999999887 333333322 2222111221 22222210
Q ss_pred ----CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc-CChHHHHHHHHHHHhCCCC
Q 047648 325 ----LKP---NVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKE-GRMEDAFAMRNSMLDRGVL 396 (537)
Q Consensus 325 ----~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~ 396 (537)
..+ ....|...+....+.++.+.|..+|++. +. ...+...|...+..-... ++.+.|..+|+...+.-+.
T Consensus 275 ~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~ 352 (493)
T 2uy1_A 275 ESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD 352 (493)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT
T ss_pred chhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC
Confidence 001 2345677777777788899999999998 32 223445554333332333 3699999999999886432
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 397 PDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 397 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
++..+...+......|+.+.|..+|+++. .....|...+..-...|+.+.+.++++++.+
T Consensus 353 -~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 353 -STLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45566677777788999999999999972 3567888888888889999999999998875
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.6e-07 Score=79.69 Aligned_cols=179 Identities=12% Similarity=0.022 Sum_probs=88.4
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 047648 170 VEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKD 249 (537)
Q Consensus 170 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~ 249 (537)
|.+.|++..+.| +...+..+...|...+++++|.+.|++..+.| +...+..+...|...+...+.++|++.|++
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIRNPQQADYPQARQLAEK 78 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTSSTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 444444444442 44555555555555555555555555555543 344444444444431111255556666555
Q ss_pred HHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHh----CCCHHHHHHHHHHH
Q 047648 250 MVENGILPNEVTFNTLIDGFCK----DENISAAMKVFEEMGSHGIA-AGVVTYNSLINGLCV----DGKLDEAVALRDEM 320 (537)
Q Consensus 250 ~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~ 320 (537)
..+.| +...+..|...|.. .+++++|+.+|++..+.+.. ..+..+..|...|.. .+++++|+..|++.
T Consensus 79 A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 79 AVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 55443 34445555555554 55566666666665554311 014445555555555 55556666666555
Q ss_pred HHcCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 047648 321 MASGLKPNVVTSNALINGFCKK-K-----LVEKARVLFDDISEQG 359 (537)
Q Consensus 321 ~~~~~~~~~~~~~~ll~~~~~~-~-----~~~~a~~~~~~~~~~~ 359 (537)
.+. ..+...+..+..+|... | +.++|...|++..+.|
T Consensus 156 ~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 156 SSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 553 12233444444444432 1 5555555555555543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.93 E-value=1.7e-07 Score=81.80 Aligned_cols=183 Identities=11% Similarity=-0.005 Sum_probs=127.5
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-C-ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH----HH
Q 047648 258 NEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIA-A-GVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNV----VT 331 (537)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~ 331 (537)
+...+..+...+.+.|++++|+..|+++.+.... + ....+..+..++.+.|++++|+..|+++.+.. |+. ..
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a 80 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYV 80 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHH
Confidence 4456667788899999999999999999875322 1 13567888899999999999999999999863 332 24
Q ss_pred HHHHHHHHHh------------------cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 047648 332 SNALINGFCK------------------KKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDR 393 (537)
Q Consensus 332 ~~~ll~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 393 (537)
+..+..++.. .|++++|...|+++.+..+. +...+.+..... .+...+
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~----------~~~~~~--- 146 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLV----------FLKDRL--- 146 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHH----------HHHHHH---
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHH----------HHHHHH---
Confidence 4455555543 57899999999999887433 333332221110 001111
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 394 GVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAG---LVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 394 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
......+...+.+.|++++|+..|+++++.. |.+ ...+..+..+|.+.|++++|++.++.+..
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 1112345677788899999999999888763 222 25677888889999999999999888765
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.92 E-value=4.6e-07 Score=82.63 Aligned_cols=166 Identities=8% Similarity=0.001 Sum_probs=119.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH----hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHH
Q 047648 335 LINGFCKKKLVEKARVLFDDISEQGL-SPSV----ITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVL-PD----VSTYNC 404 (537)
Q Consensus 335 ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~ 404 (537)
.+..+...|++++|..++++..+... .|+. ..+..+...+...|++++|+..++++.+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667778888888888888766422 1221 12334666667778889999988888874222 22 336888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC-----CCCCC-hHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCC-CC-CHHHHH
Q 047648 405 LIAGLSREGNVEGVRNIMNELVNN-----GMRAG-LVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKK-WP-NIVTYN 476 (537)
Q Consensus 405 l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~-~~~~~~ 476 (537)
+..+|...|++++|..+++++.+. +..+. ..++..+..+|.+.|++++|++.+++++++.+... .+ -..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888899999999999999888742 11122 34788899999999999999999999887543321 12 267888
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHH
Q 047648 477 VLIKGFCQKGK-LEDANGLLNELLE 500 (537)
Q Consensus 477 ~l~~~~~~~g~-~~~A~~~~~~~~~ 500 (537)
.+..+|.+.|+ +++|.+.+++.+.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999994 6999999988875
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.8e-08 Score=91.40 Aligned_cols=226 Identities=12% Similarity=0.018 Sum_probs=159.8
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047648 271 KDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARV 350 (537)
Q Consensus 271 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 350 (537)
..|++++|.+++++..+... .. + +...++++.|...|.++ ...|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 35677888888887765311 11 0 11157888888888765 356778899999999
Q ss_pred HHHHHHHc----CCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC--C-CCC--HHHHHHHHHHHHhcCCHHHHHH
Q 047648 351 LFDDISEQ----GLSP-SVITYNTLIDAYCKEGRMEDAFAMRNSMLDRG--V-LPD--VSTYNCLIAGLSREGNVEGVRN 420 (537)
Q Consensus 351 ~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~-~p~--~~~~~~l~~~~~~~~~~~~a~~ 420 (537)
.|.+..+. +-.+ -..+|+.+..+|...|++++|+..+++.++.. . .+. ..++..+...|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 99887653 1111 13478888999999999999999999876531 1 111 3577888888988 99999999
Q ss_pred HHHHHHHCCCC---C--ChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCC-CC-HHHHHHHHHHHHhcCCHHHHHH
Q 047648 421 IMNELVNNGMR---A--GLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKW-PN-IVTYNVLIKGFCQKGKLEDANG 493 (537)
Q Consensus 421 ~~~~~~~~~~~---~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~g~~~~A~~ 493 (537)
.|++..+.... + ...++..+...|...|++++|++.|++++++.+.... +. ...+..++.++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99998864211 1 1467888999999999999999999999875443211 11 2367777788888999999999
Q ss_pred HHHHHHHcCCCCCH------HhHHHHHHHHHhcCCcCCc
Q 047648 494 LLNELLEKGLIPNQ------TTYQIVREEMMEKGFIPDI 526 (537)
Q Consensus 494 ~~~~~~~~g~~p~~------~~~~~l~~~~~~~g~~~~a 526 (537)
.|++.+ . .|+. ..+..++.++ ..|+.+.+
T Consensus 217 ~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~ 251 (307)
T 2ifu_A 217 CVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQL 251 (307)
T ss_dssp HHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHH
Confidence 999998 4 3432 2344455544 45655443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.9e-07 Score=80.60 Aligned_cols=130 Identities=10% Similarity=-0.046 Sum_probs=82.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 047648 367 YNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCK 446 (537)
Q Consensus 367 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 446 (537)
+..+...+...|++++|...+++.. .|+...+..+...+...|++++|...+++..+.. +.+...+..+..+|..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 3445555666667777776666553 3456666666666777777777777777666653 3455666666777777
Q ss_pred cCChHHHHHHHHHHHHchhcCC-----------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 447 DGKSKKAVSLLDEMFKMEKEKK-----------WP-NIVTYNVLIKGFCQKGKLEDANGLLNELLEK 501 (537)
Q Consensus 447 ~g~~~~A~~~~~~~~~~~~~~~-----------~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (537)
.|++++|++.|+++++..+... .| ....+..+..+|...|++++|...+++.++.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 7777777777777665332110 01 2356667777777777777777777777763
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.89 E-value=5.8e-08 Score=75.80 Aligned_cols=103 Identities=14% Similarity=0.100 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHH
Q 047648 400 STYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLI 479 (537)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ 479 (537)
..+......+.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|++.|++++++. +.+...|..+.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----p~~~~a~~~lg 88 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD----SKFIKGYIRKA 88 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh----hhhhHHHHHHH
Confidence 456666777777777777777777777664 4566777777777778888888888887777644 34567777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHh
Q 047648 480 KGFCQKGKLEDANGLLNELLEKGLIPNQTT 509 (537)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 509 (537)
.+|...|++++|++.|++.++ +.|+...
T Consensus 89 ~~~~~~~~~~~A~~~~~~al~--l~P~~~~ 116 (126)
T 4gco_A 89 ACLVAMREWSKAQRAYEDALQ--VDPSNEE 116 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH--HCcCCHH
Confidence 788888888888888888777 4565443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.4e-08 Score=81.91 Aligned_cols=104 Identities=8% Similarity=-0.047 Sum_probs=84.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHH
Q 047648 398 DVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNV 477 (537)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 477 (537)
+...+..+...+.+.|++++|...|+++.+.. |.+...|..+..+|...|++++|++.|++++++. +.++..|..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~----P~~~~~~~~ 109 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG----KNDYTPVFH 109 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----SSCCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC----CCCcHHHHH
Confidence 34567777888888899999999998888875 5667888888889999999999999999888754 336678888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 047648 478 LIKGFCQKGKLEDANGLLNELLEKGLIPNQT 508 (537)
Q Consensus 478 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 508 (537)
+..+|...|++++|+..|++.++ +.|+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~--l~~~~~ 138 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQ--HSNDEK 138 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCHH
Confidence 88899999999999999999888 446665
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.82 E-value=1e-07 Score=81.55 Aligned_cols=159 Identities=11% Similarity=-0.045 Sum_probs=87.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCH
Q 047648 341 KKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDR----GVL-PDVSTYNCLIAGLSREGNV 415 (537)
Q Consensus 341 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~~~~ 415 (537)
..|++++|.+.++.+.. ........+..+...+...|++++|...+++..+. +.. ....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34555555553333322 11123445555566666666666666666655441 111 1234555666666667777
Q ss_pred HHHHHHHHHHHHC----CCC--CChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCC--HHHHHHHHHHHHhcCC
Q 047648 416 EGVRNIMNELVNN----GMR--AGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPN--IVTYNVLIKGFCQKGK 487 (537)
Q Consensus 416 ~~a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~ 487 (537)
++|...+++..+. +-. .....+..+...+...|++++|...++++++.......+. ..++..+..++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777666665543 101 1134466667777777777777777777765432221221 2335666677777777
Q ss_pred HHHHHHHHHHHHH
Q 047648 488 LEDANGLLNELLE 500 (537)
Q Consensus 488 ~~~A~~~~~~~~~ 500 (537)
+++|...+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777777665
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.6e-07 Score=73.26 Aligned_cols=109 Identities=13% Similarity=0.057 Sum_probs=80.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 047648 365 ITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGAL 444 (537)
Q Consensus 365 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 444 (537)
..+......|.+.|++++|+..|++.++..+. +...|..+..++...|++++|+..+++.++.+ +.+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 45666777778888888888888887776544 67778888888888888888888888887764 45567788888888
Q ss_pred HhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHH
Q 047648 445 CKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLI 479 (537)
Q Consensus 445 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ 479 (537)
...|++++|++.|++++++. +-+...+..+.
T Consensus 92 ~~~~~~~~A~~~~~~al~l~----P~~~~a~~~l~ 122 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVD----PSNEEAREGVR 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC----cCCHHHHHHHH
Confidence 88888888888888887654 23455555443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.81 E-value=7.4e-08 Score=80.51 Aligned_cols=119 Identities=8% Similarity=0.092 Sum_probs=70.9
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH-HHhcCCh--HH
Q 047648 376 KEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGA-LCKDGKS--KK 452 (537)
Q Consensus 376 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~ 452 (537)
..|++++|...++...+..+. +...+..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 345566666666666554433 55666666666666666666666666666543 3345556666666 5566666 66
Q ss_pred HHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 453 AVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 453 A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
|...++++++.. +.+...+..+..+|...|++++|...++++++
T Consensus 100 A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 100 TRAMIDKALALD----SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC----CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 777776666532 23455666666666777777777777777666
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=3.2e-08 Score=79.82 Aligned_cols=98 Identities=14% Similarity=0.003 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHH
Q 047648 398 DVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNV 477 (537)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 477 (537)
+...+..+...+...|++++|...|++..... +.+...|..+..+|...|++++|++.|++++++. +.++..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~----p~~~~~~~~ 94 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD----IXEPRFPFH 94 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCTHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----CCCchHHHH
Confidence 34455556666666666666666666666653 4455666666666666677777777776666533 234556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 047648 478 LIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 478 l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
+..+|...|++++|...|++.++
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666777777777777766665
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.80 E-value=2.7e-07 Score=75.87 Aligned_cols=130 Identities=11% Similarity=-0.004 Sum_probs=95.3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 047648 365 ITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGAL 444 (537)
Q Consensus 365 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 444 (537)
..+..+...+...|++++|...+++..+..+. +..++..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 45666777777888888888888887776443 67777788888888888888888888887764 45677788888888
Q ss_pred HhcCChHHHHHHHHHHHHchhcCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHH
Q 047648 445 CKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNV--LIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 445 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
...|++++|.+.|+++++.. +.+...+.. .+..+...|++++|+..+++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~----p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK----PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 88888888888888887643 224444433 33447777888888888877654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.79 E-value=2.3e-06 Score=78.03 Aligned_cols=164 Identities=13% Similarity=0.045 Sum_probs=117.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HhHHHH
Q 047648 300 LINGLCVDGKLDEAVALRDEMMASGL-KPNV----VTSNALINGFCKKKLVEKARVLFDDISEQGLS-PS----VITYNT 369 (537)
Q Consensus 300 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 369 (537)
.+..+...|++++|..++++..+... .|+. ..+..+...+...+++++|...+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667788888888888888776421 1221 12334666666777888888888888774222 22 236888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC-----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-hHHHH
Q 047648 370 LIDAYCKEGRMEDAFAMRNSMLDR-----GVLP-DVSTYNCLIAGLSREGNVEGVRNIMNELVNN----GMRAG-LVTYN 438 (537)
Q Consensus 370 l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~ 438 (537)
+..+|...|++++|...++++++. +..+ ...++..+...|...|++++|...+++.++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888899999999999998888741 1111 2347788888999999999999999888753 21222 57888
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHHHHc
Q 047648 439 ILVGALCKDGK-SKKAVSLLDEMFKM 463 (537)
Q Consensus 439 ~l~~~~~~~g~-~~~A~~~~~~~~~~ 463 (537)
.+..+|.+.|+ +++|.+.+++++.+
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 89999999995 69999999988763
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=4.1e-06 Score=76.61 Aligned_cols=177 Identities=10% Similarity=-0.046 Sum_probs=117.9
Q ss_pred HHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-C
Q 047648 125 AYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEG-KFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKA-G-K 201 (537)
Q Consensus 125 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~ 201 (537)
.....+..++|+++++.++..+ +-+..+|+.--..+...| .+++++..++.+....++ +..+|+.-..++... + +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSC
T ss_pred HHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCC
Confidence 3334445567888888888875 336667887777777777 488888888888887655 777888777777666 6 7
Q ss_pred hhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 047648 202 LNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMY--------KADAVFKDMVENGILPNEVTFNTLIDGFCKDE 273 (537)
Q Consensus 202 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~--------~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 273 (537)
+++++++++++.+... .+..+|+...-++.+ .+.++ ++++.++++.+..+. |..+|+.....+.+.+
T Consensus 141 ~~~EL~~~~k~L~~dp-kNy~AW~~R~wvl~~---l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~ 215 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDP-KNYHTWAYLHWLYSH---FSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRP 215 (349)
T ss_dssp CHHHHHHHHHHTSSCT-TCHHHHHHHHHHHHH---HHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTST
T ss_pred hHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH---hccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcc
Confidence 8888888888887643 366666655444444 33333 677777777776544 6777777776666666
Q ss_pred C-------HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCC
Q 047648 274 N-------ISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGK 309 (537)
Q Consensus 274 ~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 309 (537)
. ++++++.++++.... +-|...|+.+-..+.+.|+
T Consensus 216 ~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 216 GAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred ccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 5 566777776666543 2355666655555544443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.3e-06 Score=79.56 Aligned_cols=170 Identities=8% Similarity=-0.025 Sum_probs=111.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC---CCC--HH
Q 047648 331 TSNALINGFCKKKLVEKARVLFDDISEQGLSPS-----VITYNTLIDAYCKEGRMEDAFAMRNSMLDRGV---LPD--VS 400 (537)
Q Consensus 331 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~p~--~~ 400 (537)
.+...+..+...|++++|...+.+..+...... ...+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 334445566666777777777666655422211 11233455566777788888888888765321 111 44
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCC----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCC--CH
Q 047648 401 TYNCLIAGLSREGNVEGVRNIMNELVNN--GMRA----GLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWP--NI 472 (537)
Q Consensus 401 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~ 472 (537)
+++.+...|...|++++|...+++..+. ..+. ...++..+..+|...|++++|++.+++++++......+ -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7778888888888888888888887732 1111 12577888888889999999999988887654321111 25
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 047648 473 VTYNVLIKGFCQKGKLEDA-NGLLNELLE 500 (537)
Q Consensus 473 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 500 (537)
.+|..+..+|...|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788888888889999888 776777654
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=5.1e-06 Score=75.98 Aligned_cols=231 Identities=11% Similarity=0.027 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C-CHHHHHHH
Q 047648 275 ISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDG-KLDEAVALRDEMMASGLKPNVVTSNALINGFCKK-K-LVEKARVL 351 (537)
Q Consensus 275 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-~-~~~~a~~~ 351 (537)
.++|+++++.+...+.. +...|+.--.++...| .+++++++++.+.... +-+..+|+.-...+... + ++++++.+
T Consensus 70 se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 70 SERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 34566666666654321 4444555555555556 4677777777776653 33455555555555554 4 66677777
Q ss_pred HHHHHHcCCCCCHhHHHHHHHHHHhcCChH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-------HH
Q 047648 352 FDDISEQGLSPSVITYNTLIDAYCKEGRME--------DAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGN-------VE 416 (537)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-------~~ 416 (537)
++++.+..++ +...|+.-.-++.+.|.++ ++++.++++++..+. |...|+.....+.+.+. ++
T Consensus 148 ~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~ 225 (349)
T 3q7a_A 148 IHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQ 225 (349)
T ss_dssp HHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHH
Confidence 7777666444 6666665555555545554 777777777776655 77777777777766665 57
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCh--------------------HHHHHHHHHHHHch--hcCCCCCHHH
Q 047648 417 GVRNIMNELVNNGMRAGLVTYNILVGALCKDGKS--------------------KKAVSLLDEMFKME--KEKKWPNIVT 474 (537)
Q Consensus 417 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~--~~~~~~~~~~ 474 (537)
++++.+++++... +-|...|+.+-..+.+.|.. ....+...++.... ...-.+++..
T Consensus 226 eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~a 304 (349)
T 3q7a_A 226 DELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLA 304 (349)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHH
Confidence 7777777777764 55677777766666666654 12222222221100 0011467888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHH
Q 047648 475 YNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQ 511 (537)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~ 511 (537)
+..++..|...|+.++|.++++.+.+. ..|-..-|-
T Consensus 305 l~~l~d~~~~~~~~~~a~~~~~~l~~~-~dpir~~yw 340 (349)
T 3q7a_A 305 LEYLADSFIEQNRVDDAAKVFEKLSSE-YDQMRAGYW 340 (349)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhh-hChHHHHHH
Confidence 899999999999999999999998643 556554443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.1e-06 Score=75.82 Aligned_cols=124 Identities=7% Similarity=-0.085 Sum_probs=64.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC
Q 047648 300 LINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGR 379 (537)
Q Consensus 300 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 379 (537)
+...+...|++++|+..|++.. .|+...+..+..++...|++++|...|++..+.... +...+..+..+|...|+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHccc
Confidence 3344445555555555554442 334445555555555555555555555555444322 44455555555555555
Q ss_pred hHHHHHHHHHHHhCCCC--------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047648 380 MEDAFAMRNSMLDRGVL--------------P-DVSTYNCLIAGLSREGNVEGVRNIMNELVNN 428 (537)
Q Consensus 380 ~~~A~~~~~~~~~~~~~--------------p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 428 (537)
+++|...+++..+.... | ....+..+..++...|++++|...|++..+.
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 55555555555543221 0 1245555666666666666666666666654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.74 E-value=4.5e-07 Score=70.82 Aligned_cols=111 Identities=11% Similarity=0.086 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCC---HHHHH
Q 047648 400 STYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPN---IVTYN 476 (537)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~~ 476 (537)
..+..++..+.+.|++++|+..|++.++.. |.+...|..+..+|...|++++|++.+++++++.+...... ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 456677778888888888888888888764 45677788888888888888888888888887654422111 24677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHH
Q 047648 477 VLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIV 513 (537)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l 513 (537)
.+..++...|++++|++.|++.++ ..||+.+...+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~l 122 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHHH
Confidence 778888889999999999998887 45776665544
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.5e-07 Score=75.94 Aligned_cols=100 Identities=14% Similarity=-0.061 Sum_probs=80.2
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 047648 363 SVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVG 442 (537)
Q Consensus 363 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 442 (537)
+...+..+...+.+.|++++|...|+.+....+. +...|..+..++...|++++|+..|++.+... +.+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 4455667777888888888888888888876554 77788888888888888888888888888764 456677888888
Q ss_pred HHHhcCChHHHHHHHHHHHHch
Q 047648 443 ALCKDGKSKKAVSLLDEMFKME 464 (537)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~~~ 464 (537)
+|...|++++|++.|++++++.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 8888888888888888888754
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.71 E-value=5.4e-06 Score=75.47 Aligned_cols=167 Identities=13% Similarity=0.012 Sum_probs=116.7
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCC--Hh
Q 047648 296 TYNSLINGLCVDGKLDEAVALRDEMMASGLKPN-----VVTSNALINGFCKKKLVEKARVLFDDISEQGL---SPS--VI 365 (537)
Q Consensus 296 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~--~~ 365 (537)
.+...+..+...|++++|.+.+.+..+...... ...+..+...+...|++++|...+.+..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344456667777888888887777766432111 12233455566777888888888888765321 111 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh---CCCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-Ch
Q 047648 366 TYNTLIDAYCKEGRMEDAFAMRNSMLD---RGVL-P--DVSTYNCLIAGLSREGNVEGVRNIMNELVNNG----MRA-GL 434 (537)
Q Consensus 366 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~-p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~ 434 (537)
+++.+...|...|++++|...+++..+ .... + ...++..+...|...|++++|...+++..+.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 778888889999999999999988773 2111 1 12578888889999999999999999887541 111 15
Q ss_pred HHHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 047648 435 VTYNILVGALCKDGKSKKA-VSLLDEMFK 462 (537)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 462 (537)
.+|..+..+|.+.|++++| ...+++++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788899999999999999 777888765
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.70 E-value=5e-07 Score=71.00 Aligned_cols=94 Identities=13% Similarity=0.065 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHH
Q 047648 366 TYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALC 445 (537)
Q Consensus 366 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 445 (537)
.+..+...+...|++++|...+++..+..+. +...+..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHH
Confidence 3444444444444444444444444443222 34444444444444444444444444444432 223344444444444
Q ss_pred hcCChHHHHHHHHHHH
Q 047648 446 KDGKSKKAVSLLDEMF 461 (537)
Q Consensus 446 ~~g~~~~A~~~~~~~~ 461 (537)
..|++++|.+.|++++
T Consensus 96 ~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 96 AMKDYTKAMDVYQKAL 111 (133)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHH
Confidence 4444444444444444
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.70 E-value=7.5e-07 Score=68.96 Aligned_cols=96 Identities=14% Similarity=0.218 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHH
Q 047648 400 STYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLI 479 (537)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ 479 (537)
..+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~la 84 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD----PNNAEAWYNLG 84 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----CccHHHHHHHH
Confidence 344444444444555555555555444432 2334444455555555555555555555554321 22344455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 047648 480 KGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~ 500 (537)
..+...|++++|...++++.+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 85 NAYYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHH
Confidence 555555555555555555554
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.69 E-value=9.1e-07 Score=72.66 Aligned_cols=130 Identities=14% Similarity=0.037 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047648 330 VTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGL 409 (537)
Q Consensus 330 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 409 (537)
..+..+...+...|++++|...|.+..+.... +...+..+..++...|++++|...+++..+..+. +...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 34555566666777777777777776665333 5666777777777777777777777777765433 566777777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChHHHH--HHHHHHHhcCChHHHHHHHHHHHH
Q 047648 410 SREGNVEGVRNIMNELVNNGMRAGLVTYN--ILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 410 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
...|++++|...+++..+.. +.+...+. ..+..+...|++++|++.++....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 77788888888887777653 33444443 333346677788888888776654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.69 E-value=1.3e-07 Score=85.62 Aligned_cols=195 Identities=12% Similarity=-0.030 Sum_probs=103.4
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 047648 293 GVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLID 372 (537)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 372 (537)
+...+..+...+...|++++|+..|.++.... +.+...+..+..++.+.|++++|...+++..+..+. +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34455556666666677777777776666642 235566666666777777777777777776665333 5556666777
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHH
Q 047648 373 AYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKK 452 (537)
Q Consensus 373 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 452 (537)
+|...|++++|...+++..+.++. +...+...+....+ .... .-+........+.+......+... ..|++++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKK-KRWNSIEERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHH-HHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHH-HHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 777777777777777766653211 00001111111110 0111 111122222334444444444332 2577777
Q ss_pred HHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 047648 453 AVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQK-GKLEDANGLLNELLE 500 (537)
Q Consensus 453 A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 500 (537)
|++.++++.+.. +.+......+...+.+. +.+++|.++|+++.+
T Consensus 154 A~~~~~~al~~~----p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEGH----EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTTT----SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhccc----cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 777777765421 22333333444444443 567778877777654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=6.4e-07 Score=70.04 Aligned_cols=117 Identities=15% Similarity=0.061 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHH
Q 047648 400 STYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLI 479 (537)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ 479 (537)
..+..+...+...|++++|...+++..... +.+...+..+..++...|++++|.+.++++++.. +.+...+..+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~ 87 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID----PAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC----ccCHHHHHHHH
Confidence 344444555555555555555555555432 2344455555555555555555555555555422 22345555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCC-CHHhHHHHHHHHHhcCCc
Q 047648 480 KGFCQKGKLEDANGLLNELLEKGLIP-NQTTYQIVREEMMEKGFI 523 (537)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~~g~~ 523 (537)
.++...|++++|...+++..+.. | +...+..+...+.+.|++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELD--PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHhcC
Confidence 55555666666666665555532 3 334445555555555543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=1.2e-06 Score=68.54 Aligned_cols=120 Identities=15% Similarity=0.039 Sum_probs=103.8
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 047648 363 SVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVG 442 (537)
Q Consensus 363 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 442 (537)
+...+..+...+...|++++|...+++.....+. +...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 5567888899999999999999999999887544 78889999999999999999999999999874 556788999999
Q ss_pred HHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCH
Q 047648 443 ALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKL 488 (537)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 488 (537)
++...|++++|.+.|+++++.. +.+...+..+..++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD----PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcC----ccchHHHHHHHHHHHHHhcC
Confidence 9999999999999999998743 34677888888888887764
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.67 E-value=1.4e-07 Score=75.54 Aligned_cols=95 Identities=13% Similarity=-0.037 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHH
Q 047648 401 TYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIK 480 (537)
Q Consensus 401 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~ 480 (537)
.+..+...+...|++++|...|++....+ +.+...|..+..+|...|++++|+..|++++++. +.++..+..+..
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~ 94 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD----INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----CCCcHHHHHHHH
Confidence 33444444555555555555555555443 3344455555555555555555555555555432 223444555555
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 047648 481 GFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~ 500 (537)
+|...|++++|...|++.++
T Consensus 95 ~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 55555555555555555554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.67 E-value=7.4e-07 Score=69.48 Aligned_cols=96 Identities=9% Similarity=-0.028 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHH
Q 047648 400 STYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLI 479 (537)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ 479 (537)
..+..+...+...|++++|+..|++.++.. +.+...|..+..++.+.|++++|+..+++++++. +.+...|..+.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~lg 79 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD----PNFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----CCcHHHHHHHH
Confidence 445555666666666666666666666653 3455666666677777777777777777766543 23456666667
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 047648 480 KGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~ 500 (537)
.++...|++++|...+++.++
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHH
Confidence 777777777777777777666
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.67 E-value=1.3e-06 Score=67.55 Aligned_cols=116 Identities=14% Similarity=0.177 Sum_probs=98.2
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 047648 364 VITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGA 443 (537)
Q Consensus 364 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 443 (537)
...+..+...+...|++++|...++++.+..+. +..++..+...+...|++++|..+++++.+.. +.+..++..+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 567888999999999999999999999887543 78889999999999999999999999999874 5677889999999
Q ss_pred HHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhc
Q 047648 444 LCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQK 485 (537)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 485 (537)
+...|++++|...++++.+.. +.+...+..+...+...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD----PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHhc
Confidence 999999999999999998643 34566666666665543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=8e-06 Score=74.35 Aligned_cols=188 Identities=7% Similarity=0.000 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC-hHHHHHH
Q 047648 310 LDEAVALRDEMMASGLKPNVVTSNALINGFCKKK--LVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGR-MEDAFAM 386 (537)
Q Consensus 310 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~ 386 (537)
+++++.+++.+.... +-+..+|+.-...+...+ .++++..+++++.+..+. |...|+.-.-++...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 466677777766653 345566666555566666 367777777777776554 66667666666666666 4777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc-----
Q 047648 387 RNSMLDRGVLPDVSTYNCLIAGLSRE--------------GNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKD----- 447 (537)
Q Consensus 387 ~~~~~~~~~~p~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 447 (537)
++.+++.++. |...|+.....+... +.++++++.+.+.+... |-|...|+-+-..+.+.
T Consensus 168 ~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccc
Confidence 7777776655 666666666555544 34677777777777764 55667776555555554
Q ss_pred ------CChHHHHHHHHHHHHchhcCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHHcCCCCCHHh
Q 047648 448 ------GKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIK-----GFCQKGKLEDANGLLNELLEKGLIPNQTT 509 (537)
Q Consensus 448 ------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 509 (537)
+.++++++.+++++++.+ |. .|..+.. +....|..+++...+.++.+ +.|...-
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~p-----d~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~~ 310 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEP-----EN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAA 310 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCT-----TC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCc-----cc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcchhh
Confidence 457889999999987653 32 3333222 22246778899999999998 5676543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.66 E-value=3.5e-07 Score=73.66 Aligned_cols=98 Identities=10% Similarity=0.022 Sum_probs=74.9
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 047648 364 VITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGA 443 (537)
Q Consensus 364 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 443 (537)
...+..+...+.+.|++++|...|+++++..+. ++..|..+..++...|++++|+..|++..+.. |.++..|..+..+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 445666777777888888888888888776554 67777888888888888888888888887764 4556777788888
Q ss_pred HHhcCChHHHHHHHHHHHHc
Q 047648 444 LCKDGKSKKAVSLLDEMFKM 463 (537)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~~ 463 (537)
|...|++++|+..|++++++
T Consensus 114 ~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888888763
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.64 E-value=7.2e-07 Score=82.98 Aligned_cols=96 Identities=7% Similarity=-0.095 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHH
Q 047648 399 VSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVL 478 (537)
Q Consensus 399 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 478 (537)
...|..+..++.+.|++++|+..+++.++.. +.+...+..+..+|...|++++|+..|++++++. +.+...+..+
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~----P~~~~a~~~l 270 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY----PNNKAAKTQL 270 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----SSCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC----CCCHHHHHHH
Confidence 3556666666666667777776666666654 3456666666667777777777777777766543 2345566666
Q ss_pred HHHHHhcCCHHHH-HHHHHHHH
Q 047648 479 IKGFCQKGKLEDA-NGLLNELL 499 (537)
Q Consensus 479 ~~~~~~~g~~~~A-~~~~~~~~ 499 (537)
..++...|++++| ...++.|.
T Consensus 271 ~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 271 AVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666 33455544
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.62 E-value=6.8e-07 Score=78.98 Aligned_cols=132 Identities=12% Similarity=-0.096 Sum_probs=95.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hHHHHHHHHHH
Q 047648 367 YNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAG--LVTYNILVGAL 444 (537)
Q Consensus 367 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~ 444 (537)
.......+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. ...+..+..++
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHH
Confidence 3446677788888888888888887654 333355666667888889999988887554431 111 24677788888
Q ss_pred HhcCChHHHHHHHHHHHHchhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 047648 445 CKDGKSKKAVSLLDEMFKMEKEKKWP--NIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPN 506 (537)
Q Consensus 445 ~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 506 (537)
...|++++|++.|+++.. ....| ....+.....++.+.|+.++|..+|+++.. ..|+
T Consensus 182 ~~LG~~~eAl~~l~~a~~---g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a--~~P~ 240 (282)
T 4f3v_A 182 ANLALFTEAERRLTEAND---SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT--THPE 240 (282)
T ss_dssp HHTTCHHHHHHHHHHHHT---STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSCC
T ss_pred HHCCCHHHHHHHHHHHhc---CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCc
Confidence 999999999999988863 21113 344667777888889999999999999988 4466
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.62 E-value=1.6e-07 Score=84.97 Aligned_cols=195 Identities=8% Similarity=-0.054 Sum_probs=106.8
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047648 258 NEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALIN 337 (537)
Q Consensus 258 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 337 (537)
+...+..+...+.+.|++++|...|++..... +.+...|..+..++...|++++|+..++++.+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44556666667777777777777777766642 2256666777777777777777777777776643 345566677777
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 047648 338 GFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEG 417 (537)
Q Consensus 338 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 417 (537)
++...|++++|...|.+..+.++. +...+...+....+. ..+ ..+..........+......+... ..|+.++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKK-KRWNSIEERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHH-HHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHH-HHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 777777777777777776554211 100111111111111 111 111222223333344443333322 2567777
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHhc-CChHHHHHHHHHHHH
Q 047648 418 VRNIMNELVNNGMRAGLVTYNILVGALCKD-GKSKKAVSLLDEMFK 462 (537)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 462 (537)
|.+.+++..+.. +.+......+...+.+. +.+++|.++|.++.+
T Consensus 154 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEGH-EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTTT-SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 777777766543 22333334444444444 557777777776654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.3e-06 Score=74.46 Aligned_cols=157 Identities=11% Similarity=-0.032 Sum_probs=83.1
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHhHHHHHHHHHHhcCCh
Q 047648 306 VDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQ----GLS-PSVITYNTLIDAYCKEGRM 380 (537)
Q Consensus 306 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~ 380 (537)
..|++++|.+.++.+... ......++..+...+...|++++|...+++..+. +.. ....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 344555555533332221 1123344455555555555555555555554431 111 1233455566666666677
Q ss_pred HHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CChHHHHHHHHHHHhcCC
Q 047648 381 EDAFAMRNSMLDR----GVLP--DVSTYNCLIAGLSREGNVEGVRNIMNELVNN----GMR-AGLVTYNILVGALCKDGK 449 (537)
Q Consensus 381 ~~A~~~~~~~~~~----~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~ 449 (537)
++|...+++..+. +..| ....+..+...+...|++++|...+++..+. +.+ .-..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 6666666665442 1111 1334566666677777777777777766542 111 112345677777888888
Q ss_pred hHHHHHHHHHHHHc
Q 047648 450 SKKAVSLLDEMFKM 463 (537)
Q Consensus 450 ~~~A~~~~~~~~~~ 463 (537)
+++|.+.+++++++
T Consensus 163 ~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 163 LLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888877653
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=4.1e-06 Score=76.27 Aligned_cols=154 Identities=10% Similarity=0.010 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHH
Q 047648 345 VEKARVLFDDISEQGLSPSVITYNTLIDAYCKEG--RMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGN-VEGVRNI 421 (537)
Q Consensus 345 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~ 421 (537)
+++++.+++.+....++ +..+|+.-..++.+.+ .+++++.+++.+.+..+. |..+|+.-..++...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 67888999999887665 8888988877888877 489999999999998777 89999998888888898 5999999
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHHhc--------------CChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhc--
Q 047648 422 MNELVNNGMRAGLVTYNILVGALCKD--------------GKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQK-- 485 (537)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 485 (537)
+.++++.. +-|...|+.....+... +.++++++.+.+++... +-|...|+.+-..+.+.
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~----P~d~SaW~Y~r~ll~~~~~ 242 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD----PNDQSAWFYHRWLLGAGSG 242 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHhccC
Confidence 99999876 66788888877777665 45789999999998754 45888888776666655
Q ss_pred ---------CCHHHHHHHHHHHHHcCCCCCH
Q 047648 486 ---------GKLEDANGLLNELLEKGLIPNQ 507 (537)
Q Consensus 486 ---------g~~~~A~~~~~~~~~~g~~p~~ 507 (537)
+.++++++.++++++ +.||.
T Consensus 243 ~~~~~~~~~~~l~~el~~~~elle--~~pd~ 271 (331)
T 3dss_A 243 RCELSVEKSTVLQSELESCKELQE--LEPEN 271 (331)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHH--HCTTC
T ss_pred ccccchHHHHHHHHHHHHHHHHHh--hCccc
Confidence 458899999999999 55775
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.4e-06 Score=68.40 Aligned_cols=116 Identities=9% Similarity=0.009 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047648 329 VVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAG 408 (537)
Q Consensus 329 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 408 (537)
...+..+...+...|++++|...|++..+.... +...+..+..++...|++++|...+++..+..+. +...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHHH
Confidence 344455555555555555555555555544222 4445555555555566666666666655554332 45555556666
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 047648 409 LSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKD 447 (537)
Q Consensus 409 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 447 (537)
+...|++++|...+++..+.. +.+...+..+..++...
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHh
Confidence 666666666666666655542 22334444444444433
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.1e-06 Score=73.22 Aligned_cols=117 Identities=9% Similarity=0.104 Sum_probs=51.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCH--HHHH
Q 047648 343 KLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAG-LSREGNV--EGVR 419 (537)
Q Consensus 343 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~~~--~~a~ 419 (537)
|++++|...+++..+..+. +...+..+..+|...|++++|...++++.+..+. +...+..+..+ +...|++ ++|.
T Consensus 24 ~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ---CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred cCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHHHH
Confidence 3444444444444433221 3344444444444444444444444444443222 34444444444 4444444 5555
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 420 NIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
..++++.+.. +.+...+..+..+|...|++++|...|+++++
T Consensus 102 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 102 AMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 5555544432 22344444455555555555555555555544
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.56 E-value=1.8e-06 Score=80.30 Aligned_cols=131 Identities=11% Similarity=-0.026 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--------------HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 047648 330 VTSNALINGFCKKKLVEKARVLFDDISEQGLSPS--------------VITYNTLIDAYCKEGRMEDAFAMRNSMLDRGV 395 (537)
Q Consensus 330 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 395 (537)
..+..+...+.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..+++.++..+
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 227 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 227 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3445555555555555555555555555432211 46788888888889999999999988888755
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 047648 396 LPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKA-VSLLDEMFK 462 (537)
Q Consensus 396 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 462 (537)
. +...|..+..+|...|++++|+..|++.++.. +.+...+..+..++...|+.++| ...|+.|+.
T Consensus 228 ~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 228 N-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 77888888888899999999999999888874 45677888888888888888887 456666653
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=3.4e-06 Score=64.39 Aligned_cols=97 Identities=16% Similarity=0.069 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHH
Q 047648 399 VSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVL 478 (537)
Q Consensus 399 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 478 (537)
...+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...++++++.. +.+...+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~ 78 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK----PDWGKGYSRK 78 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC----cccHHHHHHH
Confidence 4455566666666777777777777666653 3456666667777777777777777777776532 2356666777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 047648 479 IKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
..++...|++++|...+++..+
T Consensus 79 a~~~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 79 AAALEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 7777777777777777777766
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.55 E-value=2.8e-06 Score=67.77 Aligned_cols=100 Identities=12% Similarity=-0.112 Sum_probs=75.4
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 047648 364 VITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGA 443 (537)
Q Consensus 364 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 443 (537)
...+..+...+.+.|++++|...|+++....+. +...|..+..++...|++++|...|++..... +.++..+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 344555667777888888888888888776544 67777778888888888888888888887764 4556777778888
Q ss_pred HHhcCChHHHHHHHHHHHHchh
Q 047648 444 LCKDGKSKKAVSLLDEMFKMEK 465 (537)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~~~~ 465 (537)
|...|++++|.+.|++++++.+
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCC
Confidence 8888888888888888876543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.55 E-value=1.3e-07 Score=80.62 Aligned_cols=131 Identities=10% Similarity=0.024 Sum_probs=79.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047648 365 ITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPD---------------VSTYNCLIAGLSREGNVEGVRNIMNELVNNG 429 (537)
Q Consensus 365 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 429 (537)
..+..+...+...|++++|...|++.++...... ...+..+..++...|++++|+..+++.++..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3455556666666777777777766665422211 2566667777777777777777777777653
Q ss_pred CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHH
Q 047648 430 MRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDAN-GLLNELLE 500 (537)
Q Consensus 430 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~ 500 (537)
+.+...+..+..+|...|++++|++.|++++++. +.+...+..+..++...++.+++. ..+..+..
T Consensus 119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN----PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456677777777777777777777777776543 235566666666666666666555 44455444
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.54 E-value=3.1e-06 Score=65.89 Aligned_cols=99 Identities=14% Similarity=0.053 Sum_probs=77.3
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 047648 364 VITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGA 443 (537)
Q Consensus 364 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 443 (537)
...+..+...+.+.|++++|...|++.++..+. +...|..+..++...|++++|+..+++.++.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 345666777788888888888888888776544 67788888888888888888888888888764 4557778888888
Q ss_pred HHhcCChHHHHHHHHHHHHch
Q 047648 444 LCKDGKSKKAVSLLDEMFKME 464 (537)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~~~ 464 (537)
+...|++++|++.|++++++.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhC
Confidence 888888888888888887643
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.54 E-value=2.3e-06 Score=66.86 Aligned_cols=116 Identities=9% Similarity=0.105 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCC----HHH
Q 047648 399 VSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPN----IVT 474 (537)
Q Consensus 399 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~ 474 (537)
...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...++++++..+.. .++ ..+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~ 81 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-REDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc-chhHHHHHHH
Confidence 3456666777777777777777777777654 4456677777778888888888888888877654321 122 667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 047648 475 YNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMM 518 (537)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 518 (537)
+..+..++...|++++|...++++.+. .|+......+.....
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 123 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHHH
Confidence 777788888888888888888888874 456555555444433
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.54 E-value=3.4e-06 Score=66.67 Aligned_cols=99 Identities=10% Similarity=-0.003 Sum_probs=50.9
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 047648 363 SVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVG 442 (537)
Q Consensus 363 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 442 (537)
+...+..+...+...|++++|...+++.++..+. +...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 3444455555555555555555555555544322 44455555555555555555555555555443 233445555555
Q ss_pred HHHhcCChHHHHHHHHHHHHc
Q 047648 443 ALCKDGKSKKAVSLLDEMFKM 463 (537)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~~ 463 (537)
++...|++++|+..|+++++.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 555555555555555555543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.5e-06 Score=70.08 Aligned_cols=99 Identities=12% Similarity=-0.055 Sum_probs=58.3
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 047648 364 VITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGA 443 (537)
Q Consensus 364 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 443 (537)
...+..+...+.+.|++++|+..|++.++..+. +...|..+..+|...|++++|+..+++.++.. +.+...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 344555555566666666666666666554433 55556666666666666666666666666553 3345556666666
Q ss_pred HHhcCChHHHHHHHHHHHHch
Q 047648 444 LCKDGKSKKAVSLLDEMFKME 464 (537)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~~~ 464 (537)
|...|++++|++.|++++++.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC
Confidence 666666666666666665543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.9e-06 Score=70.79 Aligned_cols=103 Identities=9% Similarity=-0.009 Sum_probs=91.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHH
Q 047648 398 DVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNV 477 (537)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 477 (537)
+...+..+...+...|++++|+..|++.++.. +.+...|..+..+|...|++++|+..|++++++. +.+...|..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~ 84 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD----PKYSKAWSR 84 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CCCHHHHHH
Confidence 56678889999999999999999999999875 5578899999999999999999999999999754 346889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 047648 478 LIKGFCQKGKLEDANGLLNELLEKGLIPNQ 507 (537)
Q Consensus 478 l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 507 (537)
+..+|...|++++|...|++.++. .|+.
T Consensus 85 lg~~~~~~g~~~~A~~~~~~al~~--~p~~ 112 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKGIEA--EGNG 112 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--HSSS
T ss_pred HHHHHHHccCHHHHHHHHHHHHHh--CCCc
Confidence 999999999999999999999984 3544
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=5.1e-06 Score=63.38 Aligned_cols=97 Identities=14% Similarity=0.050 Sum_probs=67.8
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 047648 364 VITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGA 443 (537)
Q Consensus 364 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 443 (537)
...+..+...+...|++++|...+++..+..+. +...+..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 345566666777777777777777777665433 56667777777777777777777777777653 3456677777777
Q ss_pred HHhcCChHHHHHHHHHHHH
Q 047648 444 LCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~ 462 (537)
+...|++++|.+.++++.+
T Consensus 82 ~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 7777777777777777764
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.50 E-value=2.9e-06 Score=67.09 Aligned_cols=100 Identities=9% Similarity=-0.019 Sum_probs=90.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHH
Q 047648 397 PDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYN 476 (537)
Q Consensus 397 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 476 (537)
.+...+..+...+...|++++|...|++.+... +.+...+..+..++...|++++|+..++++++.. +.+...|.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~ 81 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD----GQSVKAHF 81 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----chhHHHHH
Confidence 367889999999999999999999999999875 5568899999999999999999999999998754 34788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 477 VLIKGFCQKGKLEDANGLLNELLEK 501 (537)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (537)
.+..+|...|++++|...+++.++.
T Consensus 82 ~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 82 FLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999874
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.1e-05 Score=78.09 Aligned_cols=196 Identities=11% Similarity=-0.012 Sum_probs=91.0
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCCh----------------hhHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCC
Q 047648 266 IDGFCKDENISAAMKVFEEMGSHGIAAGV----------------VTYNSLINGLCVDGKLDEAVALRDEMMASG-LKPN 328 (537)
Q Consensus 266 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 328 (537)
...+.+.|++++|++.|..+.+....... .++..+...|...|++++|.+.+..+...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 44566777788888777777664322110 124555566666666666666666554321 0111
Q ss_pred H----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhC--CC--
Q 047648 329 V----VTSNALINGFCKKKLVEKARVLFDDISEQ----GLSP-SVITYNTLIDAYCKEGRMEDAFAMRNSMLDR--GV-- 395 (537)
Q Consensus 329 ~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~-- 395 (537)
. .+.+.+...+...|+++.+..++...... +..+ -..++..+...|...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 11122222223345555555555554321 1111 1234445555555555555555555554422 11
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--hHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 047648 396 LP-DVSTYNCLIAGLSREGNVEGVRNIMNELVNN----GMRAG--LVTYNILVGALCKDGKSKKAVSLLDEMF 461 (537)
Q Consensus 396 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 461 (537)
.+ ...++..++..|...|++++|..++++.... +.++. ...+..++..+...|++++|...|.++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 11 1234445555555555555555555544432 11111 1233444444455555555555555443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.46 E-value=4.2e-06 Score=73.93 Aligned_cols=190 Identities=11% Similarity=-0.072 Sum_probs=126.6
Q ss_pred HcCCchHHHHHHHHHhhCCCCCChhhHHHH-------HHHHHhCCChhHHHHHHHHHHhC------------CC------
Q 047648 128 KNMKPHLGFEAFKRAGDYGLKSSVLSCNQL-------LRALVKEGKFEDVEYVYKEMKRR------------RI------ 182 (537)
Q Consensus 128 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~------------~~------ 182 (537)
..+++..|.+.|.++.... +-....|+.+ ..++...++..++...+..-... |.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 5899999999999999875 3356778777 45666666666666555554431 10
Q ss_pred --CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCC--
Q 047648 183 --ELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPN-- 258 (537)
Q Consensus 183 --~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-- 258 (537)
.--......+...+...|++++|.++|+.+...+ |+......+...+.+ .+++++|+..|+...... .|.
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~---~~r~~dA~~~l~~a~~~~-d~~~~ 170 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGA---AERWTDVIDQVKSAGKWP-DKFLA 170 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHH---TTCHHHHHHHHTTGGGCS-CHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHH---cCCHHHHHHHHHHhhccC-CcccH
Confidence 0002234456677888899999999998887653 433344445556666 788888888887544321 111
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 047648 259 EVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAG--VVTYNSLINGLCVDGKLDEAVALRDEMMASG 324 (537)
Q Consensus 259 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 324 (537)
...+..+..++.+.|++++|+..|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 23567777888888888888888888875432133 3355566677788888888888888888753
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=1.9e-06 Score=66.58 Aligned_cols=94 Identities=11% Similarity=-0.005 Sum_probs=60.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHH
Q 047648 402 YNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKG 481 (537)
Q Consensus 402 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 481 (537)
+..+...+.+.|++++|...+++.++.. +.+...|..+..++...|++++|+..|++++++. +.+...+..+..+
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~----P~~~~~~~~la~~ 94 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD----PKDIAVHAALAVS 94 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHH
Confidence 3344555666666777777666666653 3455666666666777777777777777766543 2355566666677
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 047648 482 FCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~ 500 (537)
+...|++++|+..+++.++
T Consensus 95 ~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 95 HTNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777665
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.45 E-value=4.2e-06 Score=65.20 Aligned_cols=97 Identities=19% Similarity=0.146 Sum_probs=67.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----hHHHH
Q 047648 365 ITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGM--RAG----LVTYN 438 (537)
Q Consensus 365 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~ 438 (537)
..+..+...+.+.|++++|+..|++.++..+. +...|..+..+|...|++++|+..+++.++... .++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 34556677777777777777777777766544 566777777777777777777777777765421 111 23566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 047648 439 ILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 439 ~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
.+..++...|++++|++.|+++++
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Confidence 777788888888888888888775
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=5.6e-07 Score=76.65 Aligned_cols=149 Identities=11% Similarity=-0.076 Sum_probs=106.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----------------
Q 047648 371 IDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGL---------------- 434 (537)
Q Consensus 371 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------------- 434 (537)
+.+....|+++.+.+.|+.-.+..+. ....+..+...+...|++++|...|++..+.. +.+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQ-SAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp -----------CCCSGGGCCHHHHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHH
Confidence 33444556666666655433222111 45567788889999999999999999999863 2222
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHhHHHH
Q 047648 435 VTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPN-QTTYQIV 513 (537)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l 513 (537)
..+..+..+|...|++++|+..+++++++. +.+...+..+..+|...|++++|...|++.++. .|+ ...+..+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 162 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID----KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSY 162 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHH
Confidence 788899999999999999999999998754 457889999999999999999999999999984 454 5566777
Q ss_pred HHHHHhcCCcCCcc
Q 047648 514 REEMMEKGFIPDIE 527 (537)
Q Consensus 514 ~~~~~~~g~~~~a~ 527 (537)
...+...|..+++.
T Consensus 163 ~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 163 ELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHH
Confidence 77777766666554
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.2e-05 Score=64.31 Aligned_cols=103 Identities=15% Similarity=0.058 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----hHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHH
Q 047648 398 DVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAG----LVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIV 473 (537)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 473 (537)
+...+..+...+...|++++|...|++..+.. |+ ...+..+..+|...|++++|++.++++++.. +.+..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~~ 100 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD----GGDVK 100 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT----SCCHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC----ccCHH
Confidence 45556666666666666666666666666543 33 4566666677777777777777777776532 23566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 047648 474 TYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQT 508 (537)
Q Consensus 474 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 508 (537)
.|..+..++...|++++|...+++.++ +.|+..
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~ 133 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVS--LEPKNK 133 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HCSSCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcH
Confidence 666777777777777777777777776 335443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.38 E-value=4e-06 Score=63.34 Aligned_cols=99 Identities=11% Similarity=-0.013 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHH
Q 047648 400 STYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLI 479 (537)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ 479 (537)
..+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|.+.++++++..+. ..+...+..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~~~l~ 83 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED--EYNKDVWAAKA 83 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc--cchHHHHHHHH
Confidence 344555555666666666666666665543 334555666666666666666666666666653211 11456666666
Q ss_pred HHHHhc-CCHHHHHHHHHHHHHc
Q 047648 480 KGFCQK-GKLEDANGLLNELLEK 501 (537)
Q Consensus 480 ~~~~~~-g~~~~A~~~~~~~~~~ 501 (537)
.++... |++++|.+.+++..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 666666 6677777666666653
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.38 E-value=6.2e-06 Score=67.46 Aligned_cols=70 Identities=21% Similarity=0.121 Sum_probs=55.8
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 047648 433 GLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQT 508 (537)
Q Consensus 433 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 508 (537)
+...|..+..+|.+.|++++|+..+++++++. +.+...|..+..+|...|++++|...|++.++ +.|+..
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~----p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~ 131 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKRE----ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC----CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCCH
Confidence 34677888888888888888888888888754 34677888888888888899989888888888 457654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.37 E-value=3.8e-06 Score=68.38 Aligned_cols=135 Identities=16% Similarity=0.059 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-ChH
Q 047648 366 TYNTLIDAYCKEGRMEDAFAMRNSMLDRGVL-PD----VSTYNCLIAGLSREGNVEGVRNIMNELVNN----GMRA-GLV 435 (537)
Q Consensus 366 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~ 435 (537)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+. +.++ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4555556666666666666666665542100 01 135666666777777777777777766543 1011 134
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 436 TYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWP--NIVTYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 436 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
++..+...+...|++++|.+.++++++.......+ ...++..+...+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 66777778888888888888888877643221111 245667777888888888888888888765
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.36 E-value=3.8e-05 Score=74.19 Aligned_cols=198 Identities=11% Similarity=-0.016 Sum_probs=143.5
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHhccCCHHHHHHHHHHHHhCC-C
Q 047648 228 IDGYCKKGGIGKMYKADAVFKDMVENGILPN----------------EVTFNTLIDGFCKDENISAAMKVFEEMGSHG-I 290 (537)
Q Consensus 228 l~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~ 290 (537)
...+.+ .|++++|++.+.++.+...... ...+..+...|...|++++|.+.+..+...- .
T Consensus 11 a~~l~~---~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~ 87 (434)
T 4b4t_Q 11 ARRLVN---EKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQ 87 (434)
T ss_dssp HHHHHH---HTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHT
T ss_pred HHHHHH---CCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 345566 7999999999999988643211 1246788999999999999999999876531 1
Q ss_pred CCChh----hHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--C
Q 047648 291 AAGVV----TYNSLINGLCVDGKLDEAVALRDEMMAS----GLKP-NVVTSNALINGFCKKKLVEKARVLFDDISEQ--G 359 (537)
Q Consensus 291 ~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~ 359 (537)
.++.. ..+.+-..+...|+++.|.+++...... +..+ -..++..+...+...|++++|..++.++... +
T Consensus 88 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 167 (434)
T 4b4t_Q 88 FAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKK 167 (434)
T ss_dssp SCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred ccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHh
Confidence 11221 2233334445678999999999887652 2222 2467788999999999999999999988653 1
Q ss_pred C--CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCC-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047648 360 L--SP-SVITYNTLIDAYCKEGRMEDAFAMRNSMLDR---GVLP-D--VSTYNCLIAGLSREGNVEGVRNIMNELVNN 428 (537)
Q Consensus 360 ~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p-~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 428 (537)
. .+ ...++..++..|...|++++|..++++.... ...| . ...+..+...+...+++++|...|.+..+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 168 LDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp SSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 1 11 2457888999999999999999999987643 1122 1 345667777888899999999999888753
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.36 E-value=5.9e-06 Score=62.36 Aligned_cols=97 Identities=11% Similarity=-0.049 Sum_probs=65.5
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--ChHHHHHHH
Q 047648 364 VITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRA--GLVTYNILV 441 (537)
Q Consensus 364 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 441 (537)
...+..+...+...|++++|...+++..+..+. +...+..+...+...|++++|...+++..+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 445556666667777777777777776665433 56666667777777777777777777777653 33 466677777
Q ss_pred HHHHhc-CChHHHHHHHHHHHH
Q 047648 442 GALCKD-GKSKKAVSLLDEMFK 462 (537)
Q Consensus 442 ~~~~~~-g~~~~A~~~~~~~~~ 462 (537)
.++... |++++|.+.++++++
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhh
Confidence 777777 777777777777764
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.8e-05 Score=63.31 Aligned_cols=99 Identities=15% Similarity=0.040 Sum_probs=72.5
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHH
Q 047648 363 SVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPD---VSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNI 439 (537)
Q Consensus 363 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 439 (537)
+...+..+...+...|++++|...+++..+..+. + ...+..+..++...|++++|...+++..+.. +.+...+..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT-PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 4556667777777778888888888777765322 2 5667777777788888888888888777753 445677777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc
Q 047648 440 LVGALCKDGKSKKAVSLLDEMFKM 463 (537)
Q Consensus 440 l~~~~~~~g~~~~A~~~~~~~~~~ 463 (537)
+..++...|++++|...|+++++.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 788888888888888888888763
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.33 E-value=3.8e-06 Score=82.09 Aligned_cols=118 Identities=8% Similarity=-0.021 Sum_probs=53.3
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHH
Q 047648 303 GLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMED 382 (537)
Q Consensus 303 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 382 (537)
.+.+.|++++|++.++++.+.. +.+...+..+..++.+.|++++|...+++..+..+. +...+..+..+|...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHH
Confidence 3445555555555555555432 223445555555555555555555555555544322 34444455555555555555
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 047648 383 AFAMRNSMLDRGVLPDVSTYNCLIAG--LSREGNVEGVRNIMN 423 (537)
Q Consensus 383 A~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~ 423 (537)
|.+.+++..+..+. +...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55555555443222 22222223222 444444555554444
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.33 E-value=5.7e-06 Score=64.51 Aligned_cols=111 Identities=12% Similarity=0.129 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----hHHHH
Q 047648 365 ITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGM--RAG----LVTYN 438 (537)
Q Consensus 365 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~ 438 (537)
..+..+...+...|++++|...+++..+..+. +...+..+...+...|++++|...+++..+... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 34555666666677777777777776665432 556666666777777777777777776665421 111 55667
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHH
Q 047648 439 ILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKG 481 (537)
Q Consensus 439 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 481 (537)
.+..++...|++++|.+.|+++++. .|+...+..+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~l~~~ 121 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE-----HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-----CCCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh-----CCCHHHHHHHHHH
Confidence 7777777778888888877777652 2444444444433
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.33 E-value=5e-06 Score=64.14 Aligned_cols=94 Identities=7% Similarity=-0.073 Sum_probs=69.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 047648 367 YNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCK 446 (537)
Q Consensus 367 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 446 (537)
+..+...+.+.|++++|...+++.++..+. +...|..+..++...|++++|+..|++.++.. +.+...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 445566677778888888888777776544 67777777777778888888888888777764 4456677777778888
Q ss_pred cCChHHHHHHHHHHHH
Q 047648 447 DGKSKKAVSLLDEMFK 462 (537)
Q Consensus 447 ~g~~~~A~~~~~~~~~ 462 (537)
.|++++|+..++++++
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 8888888888877764
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.33 E-value=2.1e-05 Score=61.21 Aligned_cols=103 Identities=10% Similarity=0.040 Sum_probs=62.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh---HHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHH
Q 047648 404 CLIAGLSREGNVEGVRNIMNELVNNGMRAGL---VTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIK 480 (537)
Q Consensus 404 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~ 480 (537)
.+...+...|++++|...|+++.+.. +.+. ..+..+..++...|++++|+..|+++++..+.. ......+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH-DKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS-TTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC-cccHHHHHHHHH
Confidence 34455566677777777777666643 2222 456666677777777777777777776532110 001455666677
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHhH
Q 047648 481 GFCQKGKLEDANGLLNELLEKGLIPNQTTY 510 (537)
Q Consensus 481 ~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 510 (537)
++...|++++|...|+++++. .|+....
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~--~p~~~~~ 112 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ--YPGSDAA 112 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTSHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH--CCCChHH
Confidence 777777777777777777763 3554433
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=9.6e-05 Score=73.54 Aligned_cols=173 Identities=12% Similarity=0.032 Sum_probs=132.8
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 047648 344 LVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGR----------MEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREG 413 (537)
Q Consensus 344 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 413 (537)
..++|...++++.+.++. +..+|+.-..++...|+ ++++++.++.+.+..++ +..+|..-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence 446778888888877555 56677766666666666 88889999998887776 8888888888888888
Q ss_pred --CHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC-ChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhc-----
Q 047648 414 --NVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDG-KSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQK----- 485 (537)
Q Consensus 414 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 485 (537)
+++++++.++++.+.. +-+..+|+.-..++.+.| .++++++.++++++.. +-|...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~----p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN----FSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT----CCCHHHHHHHHHHHHHHSCCCC
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC----CCCccHHHHHHHHHHhhccccc
Confidence 6699999999998876 567788888888888888 7888999888887533 45788888888777663
Q ss_pred ---------CCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhcCCcCC
Q 047648 486 ---------GKLEDANGLLNELLEKGLIPN-QTTYQIVREEMMEKGFIPD 525 (537)
Q Consensus 486 ---------g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~g~~~~ 525 (537)
+.++++++.+++++. +.|+ ...|......+.+.|..++
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~--~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHH--HCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccccHHHHHHHHHHHHHHHh--hCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999998 4465 4567777777777776554
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.20 E-value=2.9e-06 Score=65.06 Aligned_cols=85 Identities=15% Similarity=0.061 Sum_probs=48.8
Q ss_pred cCCHHHHHHHHHHHHHCC--CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHH
Q 047648 412 EGNVEGVRNIMNELVNNG--MRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLE 489 (537)
Q Consensus 412 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 489 (537)
.|++++|+..|++.++.+ -+.+...+..+..+|...|++++|++.|+++++.. +.+...+..+..++...|+++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~g~~~ 78 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF----PNHQALRVFYAMVLYNLGRYE 78 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCchHHHHHHHHHHHHcCCHH
Confidence 355566666666666542 12234556666666666666666666666666532 224556666666666666666
Q ss_pred HHHHHHHHHHH
Q 047648 490 DANGLLNELLE 500 (537)
Q Consensus 490 ~A~~~~~~~~~ 500 (537)
+|+..+++.++
T Consensus 79 ~A~~~~~~al~ 89 (117)
T 3k9i_A 79 QGVELLLKIIA 89 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666665
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.20 E-value=2.4e-05 Score=58.95 Aligned_cols=95 Identities=14% Similarity=0.067 Sum_probs=77.2
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------
Q 047648 433 GLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPN------ 506 (537)
Q Consensus 433 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~------ 506 (537)
+...+..+...+...|++++|++.|+++++.. +.+...|..+..++...|++++|+..+++.++ +.|+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~ 76 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ----PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTSTAEHVAI 76 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSSTTSHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCccHHHH
Confidence 45677788888999999999999999998743 34678888999999999999999999999988 4565
Q ss_pred -HHhHHHHHHHHHhcCCcCCccCCCCcc
Q 047648 507 -QTTYQIVREEMMEKGFIPDIEGHMYNI 533 (537)
Q Consensus 507 -~~~~~~l~~~~~~~g~~~~a~~~l~~~ 533 (537)
...+..+..++...|..+++...+..+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 77 RSKLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 456677778888889888887776654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.19 E-value=6.1e-05 Score=58.52 Aligned_cols=92 Identities=17% Similarity=0.071 Sum_probs=59.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hHHHHHHHH
Q 047648 369 TLIDAYCKEGRMEDAFAMRNSMLDRGVLPDV---STYNCLIAGLSREGNVEGVRNIMNELVNNGMRAG---LVTYNILVG 442 (537)
Q Consensus 369 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~ 442 (537)
.+...+...|++++|...++.+.+..+. +. ..+..+..++...|++++|...++++.+.. +.+ ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHH
Confidence 3455566677777777777776664332 22 456666667777777777777777776653 222 455666777
Q ss_pred HHHhcCChHHHHHHHHHHHH
Q 047648 443 ALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~ 462 (537)
++...|++++|...|+++++
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777765
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.18 E-value=5.2e-06 Score=81.09 Aligned_cols=120 Identities=11% Similarity=0.026 Sum_probs=70.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCh
Q 047648 371 IDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKS 450 (537)
Q Consensus 371 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 450 (537)
...+.+.|++++|.+.+++.++..+. +..+|..+..++.+.|++++|+..+++..+.. +.+...+..+..+|...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 33445566666666666666665433 46666666666666777777777776666653 34456666666777777777
Q ss_pred HHHHHHHHHHHHchhcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 047648 451 KKAVSLLDEMFKMEKEKKWPNIVTYNVLIKG--FCQKGKLEDANGLLN 496 (537)
Q Consensus 451 ~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 496 (537)
++|.+.|+++++..+ .+...+..+..+ +.+.|++++|++.++
T Consensus 91 ~eA~~~~~~al~~~p----~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKP----HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHST----TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 777777777665331 123334444444 666677777777666
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=9e-05 Score=73.73 Aligned_cols=173 Identities=6% Similarity=-0.021 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC-
Q 047648 310 LDEAVALRDEMMASGLKPNVVTSNALINGFCKKKL----------VEKARVLFDDISEQGLSPSVITYNTLIDAYCKEG- 378 (537)
Q Consensus 310 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 378 (537)
.++|++.++++.... +-+...|+.--.++...|+ ++++...++.+.+..++ +..+|..-..++.+.+
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 456777777777753 3344556555555555555 88888888888887665 7788888777888888
Q ss_pred -ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc---------
Q 047648 379 -RMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREG-NVEGVRNIMNELVNNGMRAGLVTYNILVGALCKD--------- 447 (537)
Q Consensus 379 -~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 447 (537)
+++++++.++++.+..+. +..+|+....++.+.| .++++.+.+.++++.. +-+...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence 668999999999888766 8888888888888888 8888899888888875 55677887777776663
Q ss_pred -----CChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHH
Q 047648 448 -----GKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLED 490 (537)
Q Consensus 448 -----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 490 (537)
+.++++++.+++++... +-|...|..+...+.+.+++++
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~----P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTD----PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHC----SSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccHHHHHHHHHHHHHHHhhC----CCCccHHHHHHHHHhcCCCccc
Confidence 45789999999998754 4478889988888887777544
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.17 E-value=5.2e-06 Score=63.58 Aligned_cols=87 Identities=14% Similarity=0.091 Sum_probs=60.8
Q ss_pred cCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHH
Q 047648 377 EGRMEDAFAMRNSMLDRGV--LPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAV 454 (537)
Q Consensus 377 ~g~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 454 (537)
.|++++|+..|++.++.+. +.+...+..+..++...|++++|+..|++.++.. +.+...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 5677777788877777531 1245567777777888888888888888887764 445677777888888888888888
Q ss_pred HHHHHHHHch
Q 047648 455 SLLDEMFKME 464 (537)
Q Consensus 455 ~~~~~~~~~~ 464 (537)
+.++++++..
T Consensus 82 ~~~~~al~~~ 91 (117)
T 3k9i_A 82 ELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 8888877643
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.16 E-value=2.3e-05 Score=73.66 Aligned_cols=120 Identities=11% Similarity=-0.027 Sum_probs=57.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCC--------------C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 047648 367 YNTLIDAYCKEGRMEDAFAMRNSMLDRG--------------V-LPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMR 431 (537)
Q Consensus 367 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------------~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 431 (537)
+..+...+.+.|++++|+..+++.++.- . ..+..+|..+..+|.+.|++++|+..+++.++.. +
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 304 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P 304 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-c
Confidence 3444445555555555555555544310 0 0123444555555555555555555555555543 2
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 047648 432 AGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDA 491 (537)
Q Consensus 432 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 491 (537)
.+...+..+..+|...|++++|++.|++++++. +.+...+..+..++...++.+++
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~----P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA----PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555555432 12344444444444444444443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.15 E-value=1.6e-05 Score=64.63 Aligned_cols=133 Identities=14% Similarity=0.020 Sum_probs=78.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-CHH
Q 047648 331 TSNALINGFCKKKLVEKARVLFDDISEQGLS-PS----VITYNTLIDAYCKEGRMEDAFAMRNSMLDR----GVLP-DVS 400 (537)
Q Consensus 331 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~ 400 (537)
++..+...+...|++++|...+.+..+.... ++ ..++..+...+...|++++|...+++..+. +..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444444455555555555555544332000 01 134555666666677777777766665532 1100 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CChHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047648 401 TYNCLIAGLSREGNVEGVRNIMNELVNN----GMR-AGLVTYNILVGALCKDGKSKKAVSLLDEMFKM 463 (537)
Q Consensus 401 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 463 (537)
++..+...+...|++++|...+++..+. +.+ .....+..+...+...|++++|.+.+++++++
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5666677777778888888777776643 111 11356677888888889999999998888763
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.15 E-value=1.8e-05 Score=62.93 Aligned_cols=99 Identities=9% Similarity=-0.049 Sum_probs=66.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC------CC-----hHHHHHHHHHHHhcCChHHHHHHHHHHHHc--hhcCC
Q 047648 402 YNCLIAGLSREGNVEGVRNIMNELVNNGMR------AG-----LVTYNILVGALCKDGKSKKAVSLLDEMFKM--EKEKK 468 (537)
Q Consensus 402 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~ 468 (537)
+......+.+.|++++|+..|++.++.... .+ ...|..+..++.+.|++++|+..+++++++ ....+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 334444445555555555555555543211 01 237888888888888888888888888875 00001
Q ss_pred -CCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 469 -WPNIVTY----NVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 469 -~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
+-+...| .....++...|++++|+..|++.++
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 2356677 8888999999999999999999887
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.14 E-value=2.9e-05 Score=75.49 Aligned_cols=88 Identities=6% Similarity=-0.090 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHH
Q 047648 400 STYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLI 479 (537)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ 479 (537)
..|..+..+|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|+..|++++++. +.+...+..+.
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~----P~~~~a~~~l~ 392 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN----PQNKAARLQIS 392 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--------CHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CCCHHHHHHHH
Confidence 445555555556666666666666555543 3345555555666666666666666666665432 12334555555
Q ss_pred HHHHhcCCHHHHH
Q 047648 480 KGFCQKGKLEDAN 492 (537)
Q Consensus 480 ~~~~~~g~~~~A~ 492 (537)
.++.+.|+++++.
T Consensus 393 ~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 393 MCQKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555444
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.12 E-value=2.2e-05 Score=64.08 Aligned_cols=98 Identities=10% Similarity=0.051 Sum_probs=63.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhC--------CC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047648 366 TYNTLIDAYCKEGRMEDAFAMRNSMLDR--------GV---------LPDVSTYNCLIAGLSREGNVEGVRNIMNELVNN 428 (537)
Q Consensus 366 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~---------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 428 (537)
.+......+.+.|++++|+..|.+.++. .+ +.+...|..+..+|.+.|++++|+..+++.++.
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444445555555555555555554432 00 013356777777778888888888888887776
Q ss_pred CCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHch
Q 047648 429 GMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKME 464 (537)
Q Consensus 429 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 464 (537)
. +.+...|..+..+|...|++++|...|++++++.
T Consensus 93 ~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 93 E-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred C-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 4 4556777778888888888888888888887643
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.10 E-value=5e-05 Score=73.75 Aligned_cols=96 Identities=9% Similarity=0.024 Sum_probs=71.9
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 047648 364 VITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGA 443 (537)
Q Consensus 364 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 443 (537)
...|..+..+|.+.|++++|+..++++++..+. +...|..+..+|...|++++|+..|+++++.. +.+...+..+..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 467778888888888888888888888877554 67788888888888888888988888888764 4456777888888
Q ss_pred HHhcCChHHHHH-HHHHHH
Q 047648 444 LCKDGKSKKAVS-LLDEMF 461 (537)
Q Consensus 444 ~~~~g~~~~A~~-~~~~~~ 461 (537)
+.+.|+.+++.+ .+..|.
T Consensus 395 ~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 395 QKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 888888776653 444443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.07 E-value=5.8e-05 Score=60.08 Aligned_cols=99 Identities=12% Similarity=0.035 Sum_probs=70.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCC------C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------
Q 047648 367 YNTLIDAYCKEGRMEDAFAMRNSMLDRGVLP------D-----VSTYNCLIAGLSREGNVEGVRNIMNELVNN------- 428 (537)
Q Consensus 367 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p------~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------- 428 (537)
+......+.+.|++++|+..|++.++..+.. + ...|..+..++.+.|++++|+..+++.++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 4445555566666666666666666543220 2 237778888888888888888888888875
Q ss_pred CCCCChHHH----HHHHHHHHhcCChHHHHHHHHHHHHchhc
Q 047648 429 GMRAGLVTY----NILVGALCKDGKSKKAVSLLDEMFKMEKE 466 (537)
Q Consensus 429 ~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 466 (537)
. +.+...| .....++...|++++|+..|++++++.+.
T Consensus 94 ~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 94 N-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp T-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred C-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 4 3345677 88889999999999999999999886543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=9.9e-06 Score=64.34 Aligned_cols=99 Identities=11% Similarity=0.088 Sum_probs=59.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHH
Q 047648 413 GNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGK----------SKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGF 482 (537)
Q Consensus 413 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 482 (537)
+.+++|.+.+++..+.. +.+...|..+..++...++ +++|+..|++++++. +.+...|..+..+|
T Consensus 16 ~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld----P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID----PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC----TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC----cCcHHHHHHHHHHH
Confidence 34455555555555443 3344555555555554443 347777777776644 23566677777777
Q ss_pred HhcC-----------CHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 047648 483 CQKG-----------KLEDANGLLNELLEKGLIPNQTTYQIVREEMM 518 (537)
Q Consensus 483 ~~~g-----------~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 518 (537)
...| ++++|++.|++.++ +.|+...|...++...
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~~ 135 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMTA 135 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 6653 77788888888777 5677777766655443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.04 E-value=2.8e-05 Score=75.43 Aligned_cols=129 Identities=8% Similarity=-0.025 Sum_probs=94.7
Q ss_pred HHHhcCChHHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C--CCCChHHHH
Q 047648 373 AYCKEGRMEDAFAMRNSMLDR---GVLP----DVSTYNCLIAGLSREGNVEGVRNIMNELVNN-----G--MRAGLVTYN 438 (537)
Q Consensus 373 ~~~~~g~~~~A~~~~~~~~~~---~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~ 438 (537)
.+...|++++|+.++++.++. -..| ...+++.+..+|...|++++|..++++.++. | .+....+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355678888888888777643 1112 2357788888888889999888888887653 2 122246788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHchhcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 439 ILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPN----IVTYNVLIKGFCQKGKLEDANGLLNELLEK 501 (537)
Q Consensus 439 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (537)
.|...|...|++++|+.++++++++...-..|+ ..+.+.+..++...+.+++|..+++++++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999887554444443 344566677888899999999999999874
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.04 E-value=5.8e-05 Score=70.89 Aligned_cols=91 Identities=8% Similarity=-0.090 Sum_probs=70.9
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 047648 363 SVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVG 442 (537)
Q Consensus 363 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 442 (537)
+...|..+..+|.+.|++++|+..+++.++..+. +...+..+..+|...|++++|...|++..+.. +.+...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4567778888888889999999999888887544 67788888888889999999999998888764 445667777777
Q ss_pred HHHhcCChHHHHH
Q 047648 443 ALCKDGKSKKAVS 455 (537)
Q Consensus 443 ~~~~~g~~~~A~~ 455 (537)
++...++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777766666544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.01 E-value=1.6e-05 Score=73.95 Aligned_cols=148 Identities=10% Similarity=-0.037 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047648 329 VVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAG 408 (537)
Q Consensus 329 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 408 (537)
...+..+...+.+.|++++|...|.+..+.. |+... +...|+++++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 3445555666666677777777777666542 22211 112222333222111 1266777778
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHH-HHhcCC
Q 047648 409 LSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKG-FCQKGK 487 (537)
Q Consensus 409 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~ 487 (537)
|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|+..|++++++. +.+...+..+... ....+.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~----p~~~~a~~~L~~l~~~~~~~ 314 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA----PDDKAIRRELRALAEQEKAL 314 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHH
Confidence 888888888888888887764 4567778888888888888888888888886533 2244455555544 234556
Q ss_pred HHHHHHHHHHHHH
Q 047648 488 LEDANGLLNELLE 500 (537)
Q Consensus 488 ~~~A~~~~~~~~~ 500 (537)
.+++...|+.|..
T Consensus 315 ~~~a~~~~~~~l~ 327 (338)
T 2if4_A 315 YQKQKEMYKGIFK 327 (338)
T ss_dssp -------------
T ss_pred HHHHHHHHHHhhC
Confidence 7777778888776
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.97 E-value=6.4e-05 Score=57.11 Aligned_cols=78 Identities=12% Similarity=0.047 Sum_probs=40.5
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 383 AFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 383 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
|+..+++..+..+. +...+..+...+...|++++|...|++.++.. +.+...|..+..+|...|++++|...|+++++
T Consensus 4 a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44445555444332 44555555555555555555555555555543 23344555555555555555555555555544
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00047 Score=54.25 Aligned_cols=110 Identities=8% Similarity=-0.075 Sum_probs=67.0
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh----cCChHHHH
Q 047648 379 RMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCK----DGKSKKAV 454 (537)
Q Consensus 379 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 454 (537)
++++|.+.|++..+.|. |+.. +...|...+.+++|.+.|++..+.| +...+..|...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 45566666666666552 2322 4555555556666666666666653 44556666666665 56677777
Q ss_pred HHHHHHHHchhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 047648 455 SLLDEMFKMEKEKKWPNIVTYNVLIKGFCQ----KGKLEDANGLLNELLEKG 502 (537)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g 502 (537)
+.|+++.+. -++..+..|...|.. .+++++|...|++..+.|
T Consensus 82 ~~~~~Aa~~------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGL------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHT------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcC------CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 777766541 245566666666666 667777777777777655
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.88 E-value=4.4e-05 Score=70.89 Aligned_cols=150 Identities=13% Similarity=0.027 Sum_probs=86.7
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 047648 293 GVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLID 372 (537)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 372 (537)
....+..+...+.+.|++++|+..|.+.... .|+... +...++.+++...+ ....|..+..
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~ 238 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH----------HHHHHHHHHH
Confidence 3556777888889999999999999998875 344332 22233333333222 1236778888
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH-HHhcCChH
Q 047648 373 AYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGA-LCKDGKSK 451 (537)
Q Consensus 373 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~ 451 (537)
+|.+.|++++|+..+++.++..+. +...|..+..+|...|++++|...|++..+.. +.+...+..+... ....+..+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~ 316 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQ 316 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999887544 77888899999999999999999999887754 3345555555555 33456677
Q ss_pred HHHHHHHHHHHc
Q 047648 452 KAVSLLDEMFKM 463 (537)
Q Consensus 452 ~A~~~~~~~~~~ 463 (537)
.+...|.+++..
T Consensus 317 ~a~~~~~~~l~~ 328 (338)
T 2if4_A 317 KQKEMYKGIFKG 328 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHhhCC
Confidence 888888888753
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.86 E-value=8.6e-05 Score=72.05 Aligned_cols=133 Identities=6% Similarity=-0.095 Sum_probs=93.1
Q ss_pred HHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhhC-----C
Q 047648 72 SLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDY-----G 146 (537)
Q Consensus 72 ~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~ 146 (537)
.+..+|++++|..+++..++... ...++.++....+++.|...|...|++++|..+++++++. |
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~-----------~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG 386 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQE-----------PVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYH 386 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHT-----------TTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHhCCCHHHHHHHHHHHHHHHH-----------HhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcC
Confidence 35567888888888776554310 0011222334478999999999999999999999887653 2
Q ss_pred --CCCChhhHHHHHHHHHhCCChhHHHHHHHHHHh-----CCCC-C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 047648 147 --LKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKR-----RRIE-L-NLDSFNFVLNGLCKAGKLNKASDIMEDMKSL 215 (537)
Q Consensus 147 --~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 215 (537)
.+....+++.|...|...|++++|..+|++..+ .|.. | ...+.+.+..++...+.+++|+.++.++.+.
T Consensus 387 ~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 387 HNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222345788999999999999999998888654 2321 2 2334566667777888889999888888653
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0002 Score=54.23 Aligned_cols=99 Identities=11% Similarity=0.094 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047648 417 GVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLN 496 (537)
Q Consensus 417 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 496 (537)
.++..|++..+.. +.+...+..+...|...|++++|+..|+++++.. +.+...|..+..+|...|++++|...|+
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD----PTYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC----CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5677888888765 5678899999999999999999999999998754 3467889999999999999999999999
Q ss_pred HHHHcCC-CCCHHhHHHHHHHHHhc
Q 047648 497 ELLEKGL-IPNQTTYQIVREEMMEK 520 (537)
Q Consensus 497 ~~~~~g~-~p~~~~~~~l~~~~~~~ 520 (537)
+.++... .++......+...+.+.
T Consensus 78 ~al~~~~~~~~~~~~~~l~~~l~~l 102 (115)
T 2kat_A 78 SGLAAAQSRGDQQVVKELQVFLRRL 102 (115)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhccccccHHHHHHHHHHHHHh
Confidence 9987421 12344445554444443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.74 E-value=3.8e-05 Score=57.76 Aligned_cols=61 Identities=10% Similarity=0.108 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 366 TYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVN 427 (537)
Q Consensus 366 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 427 (537)
.+..+...+...|++++|...+++.++..+. +...+..+..++...|++++|+..+++.++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3334444444444444444444444443222 334444444444444444444444444443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0015 Score=51.38 Aligned_cols=16 Identities=6% Similarity=0.007 Sum_probs=6.4
Q ss_pred cCCHHHHHHHHHHHHH
Q 047648 412 EGNVEGVRNIMNELVN 427 (537)
Q Consensus 412 ~~~~~~a~~~~~~~~~ 427 (537)
.++.++|...|++..+
T Consensus 110 ~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 110 VKNEKQAVKTFEKACR 125 (138)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH
Confidence 3344444444444333
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00042 Score=49.63 Aligned_cols=83 Identities=17% Similarity=0.109 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 047648 115 NSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLN 194 (537)
Q Consensus 115 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 194 (537)
+...+..+...+...|++++|++.|++..+.. +.+...+..+...+.+.|++++|...|++..+.... +...+..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 45677778888888888888888888888764 346667777888888888888888888887776432 5566666666
Q ss_pred HHHhc
Q 047648 195 GLCKA 199 (537)
Q Consensus 195 ~~~~~ 199 (537)
++...
T Consensus 86 ~~~~~ 90 (91)
T 1na3_A 86 AKQKQ 90 (91)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 55443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00045 Score=49.44 Aligned_cols=62 Identities=18% Similarity=0.285 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 435 VTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
..+..+...+...|++++|+..|+++++.. +.+...+..+..++...|++++|...+++..+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD----PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC----CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 344444455555555555555555554322 22344455555555555555555555555555
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0003 Score=51.73 Aligned_cols=62 Identities=19% Similarity=0.188 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047648 434 LVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELL 499 (537)
Q Consensus 434 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 499 (537)
...+..+..+|...|++++|++.|+++++.. +.+...|..+..+|...|++++|+..+++.+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD----PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444444444444444444444444322 1123344444444444444444444444444
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00031 Score=51.68 Aligned_cols=66 Identities=17% Similarity=0.131 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHch
Q 047648 398 DVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKME 464 (537)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 464 (537)
+...+..+..++...|++++|+..|++.++.. +.+...|..+..+|...|++++|++.|++++++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 67889999999999999999999999999976 5567899999999999999999999999998643
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0002 Score=56.80 Aligned_cols=85 Identities=8% Similarity=-0.070 Sum_probs=51.5
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc
Q 047648 378 GRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGN----------VEGVRNIMNELVNNGMRAGLVTYNILVGALCKD 447 (537)
Q Consensus 378 g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 447 (537)
+.+++|.+.++..++..+. +...|..+..++...++ +++|+..|++.++.+ +.+..+|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHh
Confidence 3445555555555554433 45555555555444443 347777777777654 34456677777777665
Q ss_pred -----------CChHHHHHHHHHHHHch
Q 047648 448 -----------GKSKKAVSLLDEMFKME 464 (537)
Q Consensus 448 -----------g~~~~A~~~~~~~~~~~ 464 (537)
|++++|++.|+++++++
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 47888888888888743
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0023 Score=58.51 Aligned_cols=75 Identities=19% Similarity=0.204 Sum_probs=58.0
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhH
Q 047648 431 RAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTY 510 (537)
Q Consensus 431 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 510 (537)
+.+..+|..+...+...|++++|...+++++.++ |+...|..+...+.-.|++++|.+.+++... +.|...||
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln-----~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~ 346 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE-----MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTL 346 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChH
Confidence 5567777777777777788888888888888743 6777777778888888888888888888888 55777766
Q ss_pred HH
Q 047648 511 QI 512 (537)
Q Consensus 511 ~~ 512 (537)
.-
T Consensus 347 ~~ 348 (372)
T 3ly7_A 347 YW 348 (372)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0025 Score=60.86 Aligned_cols=93 Identities=13% Similarity=-0.022 Sum_probs=61.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC---CCCC----hHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCC----HHHHH
Q 047648 408 GLSREGNVEGVRNIMNELVNNG---MRAG----LVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPN----IVTYN 476 (537)
Q Consensus 408 ~~~~~~~~~~a~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~ 476 (537)
.+...|++++|+.++++.++.. +.|+ ..+++.++.+|...|++++|+.++++++++...-..|+ ..+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3445677777777777776531 1111 35677777778888888888888877776433322232 35677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 477 VLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
.|...|...|++++|..++++.++
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 777888888888888888877764
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00083 Score=64.00 Aligned_cols=105 Identities=7% Similarity=-0.074 Sum_probs=73.1
Q ss_pred hcCCHHHHHHHHHHHHHC---CCCC----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCC----HHHHHHHH
Q 047648 411 REGNVEGVRNIMNELVNN---GMRA----GLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPN----IVTYNVLI 479 (537)
Q Consensus 411 ~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~~~~l~ 479 (537)
..|++++|..++++.++. -+.| ...+++.|..+|...|++++|..++++++++...-..|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346778888887776652 1112 246788888889999999999999988887544333332 45788899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc---CCCCCHHhHHHHHH
Q 047648 480 KGFCQKGKLEDANGLLNELLEK---GLIPNQTTYQIVRE 515 (537)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~~---g~~p~~~~~~~l~~ 515 (537)
..|...|++++|..++++.++- -+-||......+.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~ 428 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQ 428 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 9999999999999999988751 23366554444443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0044 Score=44.49 Aligned_cols=67 Identities=13% Similarity=0.095 Sum_probs=46.9
Q ss_pred CCChHHHHHHHHHHHhcCC---hHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 431 RAGLVTYNILVGALCKDGK---SKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEK 501 (537)
Q Consensus 431 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (537)
+.++..+..+..++...++ .++|..+++++++.+ +.++..+..+...+.+.|++++|+..|+++++.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d----p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE----PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC----cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4556667777776654444 677778887777644 346667777777777788888888888887774
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.022 Score=59.75 Aligned_cols=186 Identities=18% Similarity=0.156 Sum_probs=105.7
Q ss_pred HhccCCHHHHHH-HHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 047648 269 FCKDENISAAMK-VFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEK 347 (537)
Q Consensus 269 ~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 347 (537)
....+++++|.+ ++..+. +......++..+...|.++.|+++.+.- . .-.......|+++.
T Consensus 609 ~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~~-------~-----~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPDQ-------D-----QKFELALKVGQLTL 670 (814)
T ss_dssp HHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCCH-------H-----HHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCCc-------c-----hheehhhhcCCHHH
Confidence 344677777766 442111 0222356667777778888777655311 1 11234556788888
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 348 ARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVN 427 (537)
Q Consensus 348 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 427 (537)
|.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.+ |..+...+...|+.+...++-+....
T Consensus 671 A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 671 ARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 87775432 2667888888888888888888888887643 33444445556666665555444444
Q ss_pred CCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 047648 428 NGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQ 507 (537)
Q Consensus 428 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 507 (537)
.| .++....+|.+.|++++|++++. +.+++++|..+-+. ..|..
T Consensus 736 ~~------~~~~A~~~~~~~g~~~~a~~~~~-------------------------~~~~~~~A~~lA~~-----~~~~~ 779 (814)
T 3mkq_A 736 TG------KFNLAFNAYWIAGDIQGAKDLLI-------------------------KSQRFSEAAFLGST-----YGLGD 779 (814)
T ss_dssp TT------CHHHHHHHHHHHTCHHHHHHHHH-------------------------HTTCHHHHHHHHHH-----TTCCH
T ss_pred cC------chHHHHHHHHHcCCHHHHHHHHH-------------------------HcCChHHHHHHHHH-----hCCCh
Confidence 33 12333334555555555555544 34666666665554 22444
Q ss_pred ----HhHHHHHHHHHhcCCc
Q 047648 508 ----TTYQIVREEMMEKGFI 523 (537)
Q Consensus 508 ----~~~~~l~~~~~~~g~~ 523 (537)
.........+...|+.
T Consensus 780 ~~i~~~~~~~~~~L~~~~~~ 799 (814)
T 3mkq_A 780 NEVNDIVTKWKENLILNGKN 799 (814)
T ss_dssp HHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHHHHhccch
Confidence 4445555556666653
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0017 Score=47.27 Aligned_cols=55 Identities=13% Similarity=0.200 Sum_probs=25.7
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047648 373 AYCKEGRMEDAFAMRNSMLDRGVLPDVS-TYNCLIAGLSREGNVEGVRNIMNELVNN 428 (537)
Q Consensus 373 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 428 (537)
.+.+.|++++|...++++.+..+. +.. .+..+..++...|++++|...|++..+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 344445555555555554443322 333 4444444444555555555555544443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.021 Score=52.27 Aligned_cols=66 Identities=12% Similarity=0.115 Sum_probs=53.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047648 396 LPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKM 463 (537)
Q Consensus 396 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 463 (537)
+.++.+|..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.|++++.+
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3477778777777777788999999888888875 67777778888888889999999988888864
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.003 Score=60.27 Aligned_cols=101 Identities=12% Similarity=0.067 Sum_probs=72.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCC---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-hHH
Q 047648 371 IDAYCKEGRMEDAFAMRNSMLDRG---VLPD----VSTYNCLIAGLSREGNVEGVRNIMNELVNN-----G-MRAG-LVT 436 (537)
Q Consensus 371 ~~~~~~~g~~~~A~~~~~~~~~~~---~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~ 436 (537)
+..+.+.|++++|+.++++.++.. ..|+ ..+++.+..+|...|++++|+.+++++++. | -.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556788888888888887541 1222 357788888888899999999888887753 2 1222 467
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCC
Q 047648 437 YNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPN 471 (537)
Q Consensus 437 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 471 (537)
++.|...|...|++++|+.++++++++...-..|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~ 408 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGRE 408 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 88899999999999999999999887554444444
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.011 Score=43.60 Aligned_cols=76 Identities=17% Similarity=0.153 Sum_probs=52.0
Q ss_pred CChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 047648 432 AGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEK---KWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQT 508 (537)
Q Consensus 432 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~ 508 (537)
.+...+..++..+...|+++.|...|+.+++..... -.+...++..+..++.+.|+++.|...++++++ +.|+..
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~~ 80 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEHQ 80 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCCH
Confidence 344555667777777788888888887777643221 123566777888888888888888888888877 556654
Q ss_pred h
Q 047648 509 T 509 (537)
Q Consensus 509 ~ 509 (537)
.
T Consensus 81 ~ 81 (104)
T 2v5f_A 81 R 81 (104)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0026 Score=60.62 Aligned_cols=96 Identities=4% Similarity=-0.073 Sum_probs=68.3
Q ss_pred hcCChHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCCC-hHHHHHHH
Q 047648 376 KEGRMEDAFAMRNSMLDR---GVLPD----VSTYNCLIAGLSREGNVEGVRNIMNELVNN-----G-MRAG-LVTYNILV 441 (537)
Q Consensus 376 ~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~l~ 441 (537)
..|++++|+.++++.++. -..|+ ..+++.+..+|...|++++|..++++.++. | -.|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 356788888888776642 11222 357788888888889998888888887753 2 1222 46788899
Q ss_pred HHHHhcCChHHHHHHHHHHHHchhcCCCCC
Q 047648 442 GALCKDGKSKKAVSLLDEMFKMEKEKKWPN 471 (537)
Q Consensus 442 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 471 (537)
..|...|++++|+.++++++++...-..|+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~ 419 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKD 419 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999887544444444
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.013 Score=45.89 Aligned_cols=91 Identities=15% Similarity=0.088 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC---ChHHHHHHHHHHHHchhcCCCC--CHHHHHHHHHHHHhcCCHH
Q 047648 415 VEGVRNIMNELVNNGMRAGLVTYNILVGALCKDG---KSKKAVSLLDEMFKMEKEKKWP--NIVTYNVLIKGFCQKGKLE 489 (537)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 489 (537)
...+.+-|.+..+.+ +++..+...+..++++.+ +.++++.+|++..+.. .| +...+-.+..+|.+.|+++
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~----~p~~~rd~lY~LAv~~~kl~~Y~ 88 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG----SKEEQRDYVFYLAVGNYRLKEYE 88 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----CccchHHHHHHHHHHHHHccCHH
Confidence 445566666666655 477778888888888877 5668888888887622 23 3566677777888899999
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHH
Q 047648 490 DANGLLNELLEKGLIPNQTTYQI 512 (537)
Q Consensus 490 ~A~~~~~~~~~~g~~p~~~~~~~ 512 (537)
+|.+.++.+++ +.|+..--..
T Consensus 89 ~A~~y~~~lL~--ieP~n~QA~~ 109 (152)
T 1pc2_A 89 KALKYVRGLLQ--TEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHHHH--HCTTCHHHHH
T ss_pred HHHHHHHHHHh--cCCCCHHHHH
Confidence 99999999988 6676543333
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0014 Score=47.79 Aligned_cols=56 Identities=21% Similarity=0.331 Sum_probs=32.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChH-HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 406 IAGLSREGNVEGVRNIMNELVNNGMRAGLV-TYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 406 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
...+...|++++|...++++.+.. +.+.. .+..+..+|...|++++|++.|+++++
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334455566666666666665543 33344 555566666666666666666666654
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.027 Score=40.30 Aligned_cols=64 Identities=5% Similarity=0.011 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 398 DVSTYNCLIAGLSREGN---VEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 398 ~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
++..+..+..++...++ .++|..++++.++.. +.++.....+...+.+.|++++|+..|+++++
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45555555555543333 466666666666554 34455555666666666666666666666654
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.054 Score=41.79 Aligned_cols=114 Identities=11% Similarity=0.119 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHCCCCCChH-HHHHHHH------HHHhcCChHHHHHHHHHHHHch
Q 047648 398 DVSTYNCLIAGLSREGNV------EGVRNIMNELVNNGMRAGLV-TYNILVG------ALCKDGKSKKAVSLLDEMFKME 464 (537)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~~~~~ 464 (537)
|+.+|-..+....+.|+. ++.+++|++.... ++|+.. .|...+. .+...+++++|+++|+.+++.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~- 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN- 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-
Confidence 666777777777766777 7777788877764 455421 1111111 123448999999999999875
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 047648 465 KEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEM 517 (537)
Q Consensus 465 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~ 517 (537)
...+ ...|......-.+.|+.+.|.+++.+.+..+.+| ...+...++.+
T Consensus 90 hKkF---AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~nl 138 (161)
T 4h7y_A 90 CKKF---AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALRNL 138 (161)
T ss_dssp CTTB---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHHHH
T ss_pred hHHH---HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHHhh
Confidence 3333 7888888888899999999999999999977554 44455555443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.10 E-value=0.037 Score=43.36 Aligned_cols=82 Identities=16% Similarity=0.016 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--ChHHHHHHHHHHHhcCChHHHHH
Q 047648 381 EDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREG---NVEGVRNIMNELVNNGMRA--GLVTYNILVGALCKDGKSKKAVS 455 (537)
Q Consensus 381 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~ 455 (537)
..+.+.|.+..+.+. ++..+...+..++.+.+ ++++++.+++...+.+ .| +...+-.+.-+|.+.|++++|++
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344455555555444 46666666666777766 4557777777776653 23 23444455566677777777777
Q ss_pred HHHHHHHch
Q 047648 456 LLDEMFKME 464 (537)
Q Consensus 456 ~~~~~~~~~ 464 (537)
.++.+++.+
T Consensus 93 y~~~lL~ie 101 (152)
T 1pc2_A 93 YVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhcC
Confidence 777777643
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.44 Score=38.32 Aligned_cols=129 Identities=14% Similarity=0.089 Sum_probs=83.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 047648 337 NGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVE 416 (537)
Q Consensus 337 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 416 (537)
......|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+..+ +..+.-.|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 4456778888888877665 2667888888888888888888888877653 334444556677777
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 047648 417 GVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLN 496 (537)
Q Consensus 417 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 496 (537)
...++-+.....| -++.....+...|+++++.++|.+.- ..|. -.......|-.+.|.++.+
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~------r~~e------A~~~A~t~g~~~~a~~~~~ 139 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG------SLPL------AYAVAKANGDEAAASAFLE 139 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT------CHHH------HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC------ChHH------HHHHHHHcCcHHHHHHHHH
Confidence 7666665555544 24555666777888888888886551 1121 1111222466677777766
Q ss_pred HH
Q 047648 497 EL 498 (537)
Q Consensus 497 ~~ 498 (537)
++
T Consensus 140 ~~ 141 (177)
T 3mkq_B 140 QA 141 (177)
T ss_dssp HT
T ss_pred Hh
Confidence 55
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.05 E-value=0.22 Score=52.06 Aligned_cols=126 Identities=20% Similarity=0.184 Sum_probs=72.5
Q ss_pred HHhCCChhHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCC
Q 047648 161 LVKEGKFEDVEY-VYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGK 239 (537)
Q Consensus 161 ~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 239 (537)
....+++++|.+ ++..+ + +......++..+.+.|..+.|.++.+.-. .-+..... .|+
T Consensus 609 ~~~~~~~~~a~~~~l~~i-----~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~---~~~ 667 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNV-----E-GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALK---VGQ 667 (814)
T ss_dssp HHHTTCHHHHHHHTGGGC-----C-CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHH---HTC
T ss_pred HHHhCCHHHHHHHHHhcC-----C-chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhh---cCC
Confidence 345667776655 43111 1 12233666667777777777776553111 11222333 577
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHH
Q 047648 240 MYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDE 319 (537)
Q Consensus 240 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 319 (537)
+++|.++.+.+ .+...|..+...+.+.++++.|.+.|..+.. |..+...+...|+.+...++.+.
T Consensus 668 ~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~ 732 (814)
T 3mkq_A 668 LTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKD 732 (814)
T ss_dssp HHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHH
Confidence 87777775432 2667788888888888888888888877643 33444455556666655554444
Q ss_pred HHH
Q 047648 320 MMA 322 (537)
Q Consensus 320 ~~~ 322 (537)
...
T Consensus 733 a~~ 735 (814)
T 3mkq_A 733 AET 735 (814)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.077 Score=46.49 Aligned_cols=95 Identities=12% Similarity=0.136 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHCCCCCC---hHHHHHHHHHHHhc-----CChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhc-
Q 047648 415 VEGVRNIMNELVNNGMRAG---LVTYNILVGALCKD-----GKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQK- 485 (537)
Q Consensus 415 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 485 (537)
...|...+++.++.. |+ ...|..+...|.+. |+.++|.+.|++++++.+.+ +..++..+...+++.
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~---~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH---DPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT---CSHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC---CchHHHHHHHHHHHhc
Confidence 456666666666653 44 55777777777773 78888888888887654211 356666777777774
Q ss_pred CCHHHHHHHHHHHHHcCCC--CCHHhHHHHH
Q 047648 486 GKLEDANGLLNELLEKGLI--PNQTTYQIVR 514 (537)
Q Consensus 486 g~~~~A~~~~~~~~~~g~~--p~~~~~~~l~ 514 (537)
|+.++|.+.+++.+..... |+....+.+.
T Consensus 254 gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~ 284 (301)
T 3u64_A 254 NNRAGFDEALDRALAIDPESVPHNKLLVILS 284 (301)
T ss_dssp TCHHHHHHHHHHHHHCCGGGCSSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCChhHHHHHH
Confidence 7788888888888776655 5554444443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.68 E-value=0.13 Score=39.78 Aligned_cols=104 Identities=13% Similarity=0.066 Sum_probs=70.3
Q ss_pred CchHHHHHHHHHHHHHcCCc------hHHHHHHHHHhhCCCCCChh-hHHHHHH------HHHhCCChhHHHHHHHHHHh
Q 047648 113 CRNSIIIDMLMLAYVKNMKP------HLGFEAFKRAGDYGLKSSVL-SCNQLLR------ALVKEGKFEDVEYVYKEMKR 179 (537)
Q Consensus 113 ~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~~~~~~a~~~~~~~~~ 179 (537)
+.+.++|-..+...-+.|++ ++..++|+++... +||+.. .|...+. .+...++.++|.++|+.+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 56778888888888888998 8888999998875 566532 1111111 11233678888888888765
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 047648 180 RRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVS 218 (537)
Q Consensus 180 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 218 (537)
..-. =...|......-.+.|++..|.+++.+.+..+.+
T Consensus 89 ~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 89 NCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 4222 2666666666677788888888888888776644
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.67 E-value=0.15 Score=37.30 Aligned_cols=66 Identities=14% Similarity=0.073 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 047648 398 DVSTYNCLIAGLSREGNVEGVRNIMNELVNNG------MRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKM 463 (537)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 463 (537)
+..-+..+...+.+.++++.|...|+...+.. -.+...++..+..++.+.|+++.|...++++++.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34445556666666666666666666655431 1234566677777777777777777777777653
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.52 Score=37.91 Aligned_cols=45 Identities=18% Similarity=0.240 Sum_probs=23.6
Q ss_pred hccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 047648 270 CKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEM 320 (537)
Q Consensus 270 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 320 (537)
...|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+.
T Consensus 16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 3445555555554443 14445555555555555555555555543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.21 E-value=0.0025 Score=59.62 Aligned_cols=89 Identities=13% Similarity=0.111 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHH
Q 047648 62 SLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKR 141 (537)
Q Consensus 62 ~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 141 (537)
++..|..+|.+..+.|.+++....+.+..+.. .++.+=+.|+-+|++.++..+-.++
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--------------------ke~~IDteLi~ayAk~~rL~elEef--- 138 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--------------------RESYVETELIFALAKTNRLAELEEF--- 138 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--------------------CSTTTTHHHHHHHHTSCSSSTTTST---
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--------------------cccccHHHHHHHHHhhCcHHHHHHH---
Confidence 44457788888888888888888877665541 2223334566666666665432221
Q ss_pred HhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHH
Q 047648 142 AGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEM 177 (537)
Q Consensus 142 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 177 (537)
+ -.||+.-...+.+-|...|.++.|.-+|..+
T Consensus 139 -l---~~~N~A~iq~VGDrcf~e~lYeAAKilys~i 170 (624)
T 3lvg_A 139 -I---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 170 (624)
T ss_dssp -T---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGS
T ss_pred -H---cCCCcccHHHHHHHHHHccCHHHHHHHHHhC
Confidence 1 1244444555555555555555555555443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.93 E-value=0.38 Score=36.17 Aligned_cols=87 Identities=15% Similarity=0.100 Sum_probs=53.4
Q ss_pred CHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHH---HHHHHHHHHHchhcCCCC--CHHHHHHHHHHHHhcCCH
Q 047648 414 NVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKK---AVSLLDEMFKMEKEKKWP--NIVTYNVLIKGFCQKGKL 488 (537)
Q Consensus 414 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~ 488 (537)
.+..+.+-|.+....| .++..+-..+.+++.+...... ++.++++..+ .+ .| .....-.|.-++.+.|++
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~---~~-~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP---KG-SKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT---TS-CHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh---cC-CcchHHHHHHHHHHHHHHhhhH
Confidence 3444455555554444 3666666667777777666554 6777776653 11 12 334455566677788888
Q ss_pred HHHHHHHHHHHHcCCCCCH
Q 047648 489 EDANGLLNELLEKGLIPNQ 507 (537)
Q Consensus 489 ~~A~~~~~~~~~~g~~p~~ 507 (537)
++|.+.++.+++ +.|+.
T Consensus 91 ~~A~~~~~~lL~--~eP~n 107 (126)
T 1nzn_A 91 EKALKYVRGLLQ--TEPQN 107 (126)
T ss_dssp HHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHHH--hCCCC
Confidence 888888888877 55654
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.91 E-value=0.18 Score=44.20 Aligned_cols=110 Identities=14% Similarity=0.098 Sum_probs=80.9
Q ss_pred chHHHHHHHHH-HHHHc--CC------chHHHHHHHHHhhCCCCCC---hhhHHHHHHHHHh-----CCChhHHHHHHHH
Q 047648 114 RNSIIIDMLML-AYVKN--MK------PHLGFEAFKRAGDYGLKSS---VLSCNQLLRALVK-----EGKFEDVEYVYKE 176 (537)
Q Consensus 114 ~~~~~~~~l~~-~~~~~--g~------~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~ 176 (537)
.+...|..++. .+... |+ ...|...++++++. .|+ ...|..+...|.+ -|+.++|.+.|++
T Consensus 152 ve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~fer 229 (301)
T 3u64_A 152 VGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEH 229 (301)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHH
Confidence 34467777665 33432 43 46778888888885 455 5688889988988 4999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHhCCCC--CChhhHH
Q 047648 177 MKRRRIELNLDSFNFVLNGLCKA-GKLNKASDIMEDMKSLGVS--PKVVTYN 225 (537)
Q Consensus 177 ~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~--~~~~~~~ 225 (537)
.++.+..-+..++......++.. |+.+++.+.+++.+..... |+....+
T Consensus 230 AL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 230 LTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHH
Confidence 99876543577888888888884 9999999999999987554 4443333
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=94.77 E-value=4.1e-06 Score=77.76 Aligned_cols=267 Identities=11% Similarity=0.120 Sum_probs=173.0
Q ss_pred CchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 047648 113 CRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFV 192 (537)
Q Consensus 113 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 192 (537)
+..+.+|..|.++.+..++..+|++.|-+. .|+..|..++.+..+.|.+++-...+....+..- ++..=+.|
T Consensus 51 ~n~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteL 122 (624)
T 3lvg_A 51 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETEL 122 (624)
T ss_dssp CCCCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHH
T ss_pred hCCccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHH
Confidence 556688999999999999999998876543 2566788899999999999999988877665533 33444678
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 047648 193 LNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKD 272 (537)
Q Consensus 193 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 272 (537)
+-+|++.++..+..+++. .|+..-...+..-|.. .|.++.|.-+|.. ..-|..|...+.+.
T Consensus 123 i~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~---e~lYeAAKilys~---------isN~akLAstLV~L 183 (624)
T 3lvg_A 123 IFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYD---EKMYDAAKLLYNN---------VSNFGRLASTLVHL 183 (624)
T ss_dssp HHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHH---SCCSTTSSTTGGG---------SCCCTTTSSSSSSC
T ss_pred HHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHH---ccCHHHHHHHHHh---------CccHHHHHHHHHHH
Confidence 889999998877544432 3677777777777777 6766665555432 22345556667777
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047648 273 ENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLF 352 (537)
Q Consensus 273 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 352 (537)
|++..|.+.-+ + ..++.||..+-.+|...+++.-|.-+--.++- .+| ....++..|-..|.+++.+.++
T Consensus 184 ~~yq~AVdaAr---K---Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLl 252 (624)
T 3lvg_A 184 GEYQAAVDGAR---K---ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITML 252 (624)
T ss_dssp SGGGSSTTTTT---T---CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTH
T ss_pred HHHHHHHHHHH---h---cCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHH
Confidence 77776654322 2 23677888888888888888777655544442 222 2334556677888888888888
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC-CCC------CCHHHHHHHHHHHHhcCCHHHHH
Q 047648 353 DDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDR-GVL------PDVSTYNCLIAGLSREGNVEGVR 419 (537)
Q Consensus 353 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~------p~~~~~~~l~~~~~~~~~~~~a~ 419 (537)
+.-... -......|+-|.-.|++- ++++..+.++..-.+ +++ -....|.-++-.|.+-.+++.|.
T Consensus 253 Eaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 253 EAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 776543 123566777777777765 445444444332221 111 02334566666666666666554
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.47 E-value=0.33 Score=36.47 Aligned_cols=80 Identities=15% Similarity=-0.010 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCC--ChHHHHHHHHHHHhcCChHHHHHH
Q 047648 382 DAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEG---VRNIMNELVNNGMRA--GLVTYNILVGALCKDGKSKKAVSL 456 (537)
Q Consensus 382 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~ 456 (537)
.+.+-+......|. |+..+-..+..++.+..+... ++.+++.+.+.+ .| .....-.|.-++.+.|++++|++.
T Consensus 19 ~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 19 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 33444444433333 455555555556665555444 666666665543 12 223333445566667777777777
Q ss_pred HHHHHHc
Q 047648 457 LDEMFKM 463 (537)
Q Consensus 457 ~~~~~~~ 463 (537)
++.+++.
T Consensus 97 ~~~lL~~ 103 (126)
T 1nzn_A 97 VRGLLQT 103 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7666653
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.99 E-value=4.4 Score=38.59 Aligned_cols=95 Identities=15% Similarity=0.213 Sum_probs=49.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC--hHH
Q 047648 368 NTLIDAYCKEGRMEDAFAMRNSMLDR--GVLPD---VSTYNCLIAGLSREGNVEGVRNIMNELVN----NGMRAG--LVT 436 (537)
Q Consensus 368 ~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~ 436 (537)
..|...|...|++.+|.+++..+... +.... ...+...++.|...+++..|..++.++.. ...+|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 34555566666666666666665421 21111 23445555666666666666666665432 111122 234
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 437 YNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 437 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
+...+..+...+++.+|-+.|.++.+
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 45555566666666666666666543
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=93.90 E-value=1.6 Score=33.10 Aligned_cols=64 Identities=16% Similarity=0.233 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 047648 366 TYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGM 430 (537)
Q Consensus 366 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 430 (537)
.....+..+...|+-+.-.+++..+.. +.+|++...-.+..+|.+.|+..++.+++.+.-+.|+
T Consensus 93 ~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 93 HVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 344445555555665555555555433 2344555555666666666666666666666555553
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=93.20 E-value=9.3 Score=39.84 Aligned_cols=317 Identities=13% Similarity=0.034 Sum_probs=168.1
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCChh--hHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCC-------CCCHHHHHHH
Q 047648 195 GLCKAGKLNKASDIMEDMKSLGVSPKVV--TYNILIDGYCKKGGIGKMYKADAVFKDMVENGI-------LPNEVTFNTL 265 (537)
Q Consensus 195 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~-------~p~~~~~~~l 265 (537)
+....|+.++++.+++.....+...+.. .-..+.-+... .|...++..++.......- .+....-..+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~---ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaL 459 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIY---AGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASL 459 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHT---TTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHcCccccccccccHHHHHHHHH
Confidence 4556788888877777655421011222 22223333444 3444467777777664311 0111112222
Q ss_pred --HHHHhccCCHHHHHHHHHHHHhCCCCCChh--hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--H
Q 047648 266 --IDGFCKDENISAAMKVFEEMGSHGIAAGVV--TYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALING--F 339 (537)
Q Consensus 266 --~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~--~ 339 (537)
..+|.-.++ +++.+.+..+....- +... .-..+...+.-.|+.+....++..+.+. .+..+...+..+ +
T Consensus 460 GLGla~~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGl 534 (963)
T 4ady_A 460 GIGLAAMGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLAL 534 (963)
T ss_dssp HHHHHSTTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHh
Confidence 223333444 355555555554321 1111 1122334455778888888888877764 233344444444 3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHhHHH--HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 047648 340 CKKKLVEKARVLFDDISEQGLSPSVITYN--TLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEG 417 (537)
Q Consensus 340 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~ 417 (537)
...|+.+.+..+.+.+... ..|....-. ++.-+|+..|+.....+++..+.+.. ..+......+.-++...|+.+.
T Consensus 535 l~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~ 612 (963)
T 4ady_A 535 INYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTT 612 (963)
T ss_dssp HTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSS
T ss_pred hhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHH
Confidence 4678888888888888764 122222222 33446778888877777888888752 2234333334444555777777
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCh-HHHHHHHHHHHHchhcCCCCCHHHHHHHHHHH--HhcCC-------
Q 047648 418 VRNIMNELVNNGMRAGLVTYNILVGALCKDGKS-KKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGF--CQKGK------- 487 (537)
Q Consensus 418 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~------- 487 (537)
+.++++.+.+.+ .|...--..+.-+....|.. .++++.+..+.. .+|..+-..-+.++ .-.|.
T Consensus 613 v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~------D~d~~Vrq~Ai~ALG~Ig~gtnna~~~r 685 (963)
T 4ady_A 613 VPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK------DPVDFVRQAAMIALSMILIQQTEKLNPQ 685 (963)
T ss_dssp HHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT------CSSHHHHHHHHHHHHHHSTTCCTTTCTT
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc------CCCHHHHHHHHHHHHHHhcCCccccchH
Confidence 777777666654 44444444444455555554 678888888863 34544443333333 33443
Q ss_pred HHHHHHHHHHHHHc-CCCCCHHhHHHHHHHHHhcCCcCCccC
Q 047648 488 LEDANGLLNELLEK-GLIPNQTTYQIVREEMMEKGFIPDIEG 528 (537)
Q Consensus 488 ~~~A~~~~~~~~~~-g~~p~~~~~~~l~~~~~~~g~~~~a~~ 528 (537)
....++.+...... .-.|+......+..++..+|...-...
T Consensus 686 va~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG~~n~tis 727 (963)
T 4ady_A 686 VADINKNFLSVITNKHQEGLAKFGACVAQGIMNAGGRNVTIQ 727 (963)
T ss_dssp HHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTGGGTEEEC
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcCCCceEEE
Confidence 33333333333332 223556666777788888887554433
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.17 E-value=1 Score=35.58 Aligned_cols=28 Identities=18% Similarity=0.138 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047648 472 IVTYNVLIKGFCQKGKLEDANGLLNELL 499 (537)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 499 (537)
.+.---+..+|.+.|++++|+.+++...
T Consensus 122 ~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 122 IEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 3444557789999999999999887653
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.09 E-value=0.83 Score=42.74 Aligned_cols=68 Identities=16% Similarity=0.141 Sum_probs=37.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHhH
Q 047648 439 ILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLE-----KGLIPNQTTY 510 (537)
Q Consensus 439 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~~ 510 (537)
.++..+...|++++|+..+..++... +-+...|..++.+|.+.|+..+|++.|+++.+ .|+.|...+-
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~----P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH----PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 34455555666666665555555422 23455566666666666666666666655433 3566655543
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=92.85 E-value=2.4 Score=32.13 Aligned_cols=138 Identities=16% Similarity=0.114 Sum_probs=72.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047648 342 KKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNI 421 (537)
Q Consensus 342 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 421 (537)
.|..++..++..+.... .+..-||.++--....-+-+-..++++.+-+. .|. ...|++......
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHHH
Confidence 45666666666655543 13444444444444444444444444444321 111 123333333333
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 422 MNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEK 501 (537)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (537)
+-.+ ..+....+..++.+...|+-++-.+++..++ .+.+|++...-.+..+|.+.|+..+|.++++++.+.
T Consensus 84 ~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l----~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 84 GVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREIL----KNNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHh----ccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3222 1233445555666666677666666666643 133566666677777777777777777777777777
Q ss_pred CCC
Q 047648 502 GLI 504 (537)
Q Consensus 502 g~~ 504 (537)
|++
T Consensus 155 G~k 157 (172)
T 1wy6_A 155 GEK 157 (172)
T ss_dssp TCH
T ss_pred hhH
Confidence 654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.46 E-value=0.81 Score=46.48 Aligned_cols=52 Identities=15% Similarity=0.174 Sum_probs=32.3
Q ss_pred HHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 047648 443 ALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNEL 498 (537)
Q Consensus 443 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 498 (537)
.+...|+++-|+++-++++... +-+-.+|..|..+|...|+++.|+-.++-+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~a----PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELA----LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC----SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcC----chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3455666666666666665422 234566666666777777777666666655
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=91.95 E-value=7.9 Score=42.08 Aligned_cols=142 Identities=10% Similarity=-0.003 Sum_probs=73.7
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC------------------
Q 047648 265 LIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLK------------------ 326 (537)
Q Consensus 265 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~------------------ 326 (537)
++..+.+.+.++.+.++.... +.+...--.+..++...|++++|.++|.+.-. |+.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccc
Confidence 334444455555444433222 12333334455677778888888888765421 110
Q ss_pred -----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 047648 327 -----PNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSV----ITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLP 397 (537)
Q Consensus 327 -----~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 397 (537)
.-..-|..++..+.+.+.++.+.++-....+.....+. ..|..+...+...|++++|...+-.+.+...+
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r- 970 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK- 970 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC-
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH-
Confidence 01123455566666666666666665555443211111 24566666677777777777766666554332
Q ss_pred CHHHHHHHHHHHHhcCC
Q 047648 398 DVSTYNCLIAGLSREGN 414 (537)
Q Consensus 398 ~~~~~~~l~~~~~~~~~ 414 (537)
...+..++...+..|.
T Consensus 971 -~~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 971 -KSCLLDFVNQLTKQGK 986 (1139)
T ss_dssp -HHHHHHHHHHHHHHCC
T ss_pred -HHHHHHHHHHHHhCCC
Confidence 3445555555554444
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.18 E-value=1.1 Score=45.56 Aligned_cols=127 Identities=9% Similarity=0.081 Sum_probs=79.4
Q ss_pred HHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCChhhH--HHHHHHHhcCCCCCCHHHHHHHHHHHHHC------CCCC-C
Q 047648 189 FNFVLNGLCKAGK-LNKASDIMEDMKSLGVSPKVVTY--NILIDGYCKKGGIGKMYKADAVFKDMVEN------GILP-N 258 (537)
Q Consensus 189 ~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~--~~ll~~~~~~~~~~~~~~a~~~~~~~~~~------~~~p-~ 258 (537)
...++..+...|+ .+.|..+|+++.+.. |...++ ..++..+... ..+--+|.+++.+..+. ...+ +
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~--~~~Ev~av~ll~~~l~~~~~~~~~l~~~~ 326 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHI--ETKELDMITILNETLDPLLSLLNDLPPRD 326 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTC--GGGHHHHHHHHHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHhhhhhhhhcccc
Confidence 3455555555666 577899999888763 333332 2333333331 12334566666554421 1111 1
Q ss_pred H----------HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHH
Q 047648 259 E----------VTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEM 320 (537)
Q Consensus 259 ~----------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 320 (537)
. .....-...+...|+++.|+++-++..... +.+-.+|..|..+|...|+++.|+-.+..+
T Consensus 327 ~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 327 ADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1 112222345667899999999999987752 346789999999999999999999988876
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.37 E-value=5 Score=43.65 Aligned_cols=29 Identities=21% Similarity=0.363 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHcCCchHHHHHHHHHh
Q 047648 115 NSIIIDMLMLAYVKNMKPHLGFEAFKRAG 143 (537)
Q Consensus 115 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 143 (537)
++...-.+.++|...|++++|.+.|++..
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 44444567788999999999999998764
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=89.95 E-value=1.4 Score=41.10 Aligned_cols=67 Identities=12% Similarity=0.075 Sum_probs=40.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCChH
Q 047648 368 NTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVN-----NGMRAGLV 435 (537)
Q Consensus 368 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~ 435 (537)
..++..+...|++++|...+..+....+- +...+..+|.++...|+..+|.+.|++..+ .|+.|+..
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 34555566666666666666666655433 556666666666666766666666666543 25666544
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.70 E-value=14 Score=35.07 Aligned_cols=101 Identities=20% Similarity=0.217 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---hHHHHHHHHHHHhcCChHHHHHHHHHHHH-chhcCCCCC--
Q 047648 400 STYNCLIAGLSREGNVEGVRNIMNELVNN--GMRAG---LVTYNILVGALCKDGKSKKAVSLLDEMFK-MEKEKKWPN-- 471 (537)
Q Consensus 400 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~-- 471 (537)
.....|...+...|++.+|..++..+... +.... ...+..-+..|...+++.+|..++.++.. .......|+
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk 217 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK 217 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence 34456788899999999999999998753 21111 35677778899999999999999998743 122222333
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 472 IVTYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 472 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
...+...+..+...+++.+|-+.|.++.+
T Consensus 218 ~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 218 LEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34567777888889999999888877754
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=89.47 E-value=2 Score=32.39 Aligned_cols=71 Identities=13% Similarity=0.067 Sum_probs=38.6
Q ss_pred CCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 047648 218 SPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSH 288 (537)
Q Consensus 218 ~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 288 (537)
.|+..+--.+.-++.++....+..+++.++.++.+.+..-.....-.+.-++.+.|+++.|.+..+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 34555544455555554444455566666666665432112344445555666666666666666666654
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=89.23 E-value=5 Score=30.75 Aligned_cols=70 Identities=13% Similarity=0.060 Sum_probs=34.8
Q ss_pred CChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 047648 219 PKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSH 288 (537)
Q Consensus 219 ~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 288 (537)
|+..+--.+.-++.++....+..+++.+++++...+..-.......+.-++.+.|++++|.++.+.+.+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4444444444455554444445555556655555332212233334445555666666666665555553
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=89.15 E-value=24 Score=36.90 Aligned_cols=274 Identities=12% Similarity=0.015 Sum_probs=137.7
Q ss_pred CCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCC-------CCChhhHHHHHHHHHhC
Q 047648 237 IGKMYKADAVFKDMVENGILPN--EVTFNTLIDGFCKDENISAAMKVFEEMGSHGI-------AAGVVTYNSLINGLCVD 307 (537)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~ 307 (537)
.++.++++.++......+-..+ ...-..+.-+....|..+++..++.......- .+....-.++.-++.-.
T Consensus 387 ~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~ 466 (963)
T 4ady_A 387 KGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAM 466 (963)
T ss_dssp SSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHST
T ss_pred cCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhc
Confidence 4555555555554433110112 22223333444555555567776666554211 01111122233333333
Q ss_pred CC-HHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHH
Q 047648 308 GK-LDEAVALRDEMMASGLKPNV--VTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAF 384 (537)
Q Consensus 308 ~~-~~~A~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 384 (537)
|. -+++.+.+..+....- +.. ..-.++...+...|+.+....++..+.+.. .-+..-...+.-++...|+.+.+.
T Consensus 467 GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~ 544 (963)
T 4ady_A 467 GSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELAD 544 (963)
T ss_dssp TCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGH
T ss_pred CCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHH
Confidence 32 2455566666554321 111 111223333456677777777777766542 112222333444455778888888
Q ss_pred HHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 385 AMRNSMLDRGVLPDVSTY--NCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 385 ~~~~~~~~~~~~p~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
.+.+.+... ..|....- .++.-+|+..|+.....+++..+.... ..+..-...+.-++...|+.+.+.++++.+.+
T Consensus 545 ~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~ 622 (963)
T 4ady_A 545 DLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK 622 (963)
T ss_dssp HHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG
T ss_pred HHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh
Confidence 888887764 12222211 234456678888887777888887642 22333333333344456777666666654432
Q ss_pred chhcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHhcC
Q 047648 463 MEKEKKWPNIVTYNVLIKGFCQKGKL-EDANGLLNELLEKGLIPNQTTYQIVREEMMEKG 521 (537)
Q Consensus 463 ~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~~~g 521 (537)
...|.+..-..+.-+....|.. .+++.++..+.. .+|..+-...+.++..-|
T Consensus 623 ----~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 623 ----SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp ----CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHS
T ss_pred ----cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHh
Confidence 2234444444455555555554 578888888864 356655555554444433
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=87.60 E-value=5.5 Score=28.29 Aligned_cols=42 Identities=10% Similarity=0.203 Sum_probs=17.1
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047648 385 AMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELV 426 (537)
Q Consensus 385 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 426 (537)
+-++.+......|++.+..+.+++|.+.+++..|.++++-++
T Consensus 31 rglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 31 KGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333333333344444444444444444444444444444333
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=87.41 E-value=18 Score=33.51 Aligned_cols=167 Identities=14% Similarity=0.024 Sum_probs=103.8
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHhHH-
Q 047648 294 VVTYNSLINGLCVDGKLDEAVALRDEMMAS-GLKP---NVVTSNALINGFCKKK-LVEKARVLFDDISEQGLSPSVITY- 367 (537)
Q Consensus 294 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~- 367 (537)
..+...+...|.+.|+.++..+++.....- +.-+ .......+++.+.... ..+.-.++..+..+..-. +-.+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 345677888899999999998888876432 0011 2345677788887643 334444444444321000 11223
Q ss_pred -----HHHHHHHHhcCChHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCChH
Q 047648 368 -----NTLIDAYCKEGRMEDAFAMRNSMLDR--GVLPD---VSTYNCLIAGLSREGNVEGVRNIMNELVNN--GMRAGLV 435 (537)
Q Consensus 368 -----~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~ 435 (537)
..++..|...|++.+|.+++.++.+. ..... ..++..-++.|...+++.++...+...... .+.+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 25788888999999998888888764 11111 234556667788889999999888877654 2223333
Q ss_pred HHH----HHHHHHH-hcCChHHHHHHHHHHH
Q 047648 436 TYN----ILVGALC-KDGKSKKAVSLLDEMF 461 (537)
Q Consensus 436 ~~~----~l~~~~~-~~g~~~~A~~~~~~~~ 461 (537)
+.. .-+..+. ..+++..|-..|-+..
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 332 2234456 7888888888887764
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=87.19 E-value=6.3 Score=28.00 Aligned_cols=49 Identities=12% Similarity=0.080 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047648 344 LVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLD 392 (537)
Q Consensus 344 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 392 (537)
+.-+..+-++.+...++.|++.+..+.+.+|.+.+++..|.++++-+..
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3344455555555555555555555555555555555555555555543
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=87.01 E-value=17 Score=32.71 Aligned_cols=82 Identities=12% Similarity=0.069 Sum_probs=43.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHH
Q 047648 397 PDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYN 476 (537)
Q Consensus 397 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 476 (537)
-|+.....+...|.+.+++.+|...|- . |..++...+..++.-+...+...++--++-+
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e~dlfiaR----------------- 192 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHTAPLYCAR----------------- 192 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGGHHHHHHH-----------------
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCccHHHHHHH-----------------
Confidence 366667777777788888777777662 1 3233335554444444443332222222111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 477 VLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 477 ~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
.+--|...++...|..+++.+.+
T Consensus 193 -aVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 193 -AVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -HHHHHHHhCCHHHHHHHHHHHHH
Confidence 12235556777777776666553
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=86.17 E-value=18 Score=32.23 Aligned_cols=80 Identities=11% Similarity=0.063 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhc---CChHHHHHHHHHHHHchhcCCCCCHHH
Q 047648 398 DVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKD---GKSKKAVSLLDEMFKMEKEKKWPNIVT 474 (537)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~ 474 (537)
|+.....+...|.+.+++.+|...|-. +-..+...+..++.-+... |...++--++-++
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~Ra-------------- 194 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRL-------------- 194 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH--------------
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHH--------------
Confidence 667777777777777777777766531 1111344444444444333 4444332222221
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 047648 475 YNVLIKGFCQKGKLEDANGLLNELL 499 (537)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~~~~~~~ 499 (537)
+--|...|+...|..+++...
T Consensus 195 ----VL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 195 ----VFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp ----HHHHHHTTBHHHHHHHHHHHH
T ss_pred ----HHHHHHhcCHHHHHHHHHHHH
Confidence 223445677777777777654
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=85.40 E-value=10 Score=28.65 Aligned_cols=75 Identities=17% Similarity=0.159 Sum_probs=50.0
Q ss_pred CCChHHHHHHHHHHHhcCCh---HHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 047648 431 RAGLVTYNILVGALCKDGKS---KKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQ 507 (537)
Q Consensus 431 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 507 (537)
.|+..+--.+.+++.+..+. .+++.+++++.+.. ..-....+-.|.-++.+.|++++|.+..+.+++ +.|+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~---~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N 111 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA---ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 111 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC---GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCC
Confidence 56666666677777776654 46777777776421 111355666677788888888888888888887 66765
Q ss_pred HhH
Q 047648 508 TTY 510 (537)
Q Consensus 508 ~~~ 510 (537)
.-.
T Consensus 112 ~QA 114 (134)
T 3o48_A 112 KQV 114 (134)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.88 E-value=15 Score=34.75 Aligned_cols=97 Identities=11% Similarity=-0.012 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChHHHH----
Q 047648 366 TYNTLIDAYCKEGRMEDAFAMRNSMLDR--GVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNN-GMRAGLVTYN---- 438 (537)
Q Consensus 366 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~---- 438 (537)
+...+...|.+.|++++|.+.+.++... +..--...+...++.+...+++..+...+.++... .-.++....+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5667888888899999999988888764 23333556777788888888888888888877643 1112222222
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 047648 439 ILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 439 ~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
.-+..+...+++..|-+.|-++..
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 222334456777777777776654
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=83.86 E-value=12 Score=28.24 Aligned_cols=59 Identities=8% Similarity=0.174 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHH
Q 047648 382 DAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILV 441 (537)
Q Consensus 382 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 441 (537)
+..+-++.+...++.|++.+..+.+++|.+.+++..|.++|+-++.+ +.+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 44455555555566666666666666666666666666666665544 123333454443
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=83.41 E-value=4.7 Score=34.82 Aligned_cols=117 Identities=15% Similarity=0.080 Sum_probs=77.7
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHHhc
Q 047648 372 DAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGL----VTYNILVGALCKD 447 (537)
Q Consensus 372 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~ 447 (537)
....+.|++++|+.....-++..+. |...-..+++.+|-.|+++.|.+-++...+.. |+. ..|..+|.+-
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~--p~~~~~a~~yr~lI~aE--- 78 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKAA--- 78 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHH---
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHHHHHH---
Confidence 4466789999999999888888766 88888899999999999999999988888753 442 3344444331
Q ss_pred CChHHHHHHHHHHHH--chhcCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHc
Q 047648 448 GKSKKAVSLLDEMFK--MEKEKKWPNIVTYNVLIKGFC--QKGKLEDANGLLNELLEK 501 (537)
Q Consensus 448 g~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 501 (537)
..=.+... ..+.-+.....-...++.++. ..|+.++|..+-.++.+.
T Consensus 79 -------~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 79 -------QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp -------HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 11122221 001111122334455556554 469999999999888764
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=83.39 E-value=9.5 Score=28.78 Aligned_cols=62 Identities=15% Similarity=0.152 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047648 344 LVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLI 406 (537)
Q Consensus 344 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 406 (537)
|.-+..+-++.+...++.|++.+..+.+.+|.+.+++..|.++++-++.+ ..+...+|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 34445555666666667777777777777777777777777777776654 222334455554
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.55 E-value=11 Score=29.82 Aligned_cols=27 Identities=7% Similarity=-0.006 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHH
Q 047648 187 DSFNFVLNGLCKAGKLNKASDIMEDMK 213 (537)
Q Consensus 187 ~~~~~l~~~~~~~g~~~~a~~~~~~~~ 213 (537)
+.--.+..+|.+.|++++|+.+++.+.
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 333445666777777777777766543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 537 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.95 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.67 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.66 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.34 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.33 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.3 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.29 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.27 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.19 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.18 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.15 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.14 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.08 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.83 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.74 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.69 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.65 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.61 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.61 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.61 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.61 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.6 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.59 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.54 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.53 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.43 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.42 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.4 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.38 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.27 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.27 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.23 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.17 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.12 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.04 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.03 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.01 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.0 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.99 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.97 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.96 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.95 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.93 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.9 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.87 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.81 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.68 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.63 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.63 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.56 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.54 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.29 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.93 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.61 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.35 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.06 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.97 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.52 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.43 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 91.29 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 90.32 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 87.64 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 84.66 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=4.7e-23 Score=195.70 Aligned_cols=383 Identities=12% Similarity=0.041 Sum_probs=313.5
Q ss_pred HHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 047648 122 LMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGK 201 (537)
Q Consensus 122 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 201 (537)
+...+.+.|++++|++.|+++.+.. |-+..++..+...+.+.|++++|...|++..+..+. +..++..+..++.+.|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhcc
Confidence 5677889999999999999998874 446788999999999999999999999999887543 77889999999999999
Q ss_pred hhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 047648 202 LNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKV 281 (537)
Q Consensus 202 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 281 (537)
+++|.+.+....+.... +............. .+....+............ ................+....+...
T Consensus 83 ~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPD-FIDGYINLAAALVA---AGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKAC 157 (388)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH---HSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred ccccccccccccccccc-cccccccccccccc---ccccccccccccccccccc-ccccccccccccccccchhhhhHHH
Confidence 99999999999886432 33333333333333 3444444444444444322 3445556666777788888888888
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 047648 282 FEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLS 361 (537)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 361 (537)
+....... +.+...+..+...+...|+++.|...+.+..+.. +.+...+..+...+...|++++|...+.+....+..
T Consensus 158 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 235 (388)
T d1w3ba_ 158 YLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN 235 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh
Confidence 88877653 3356778888899999999999999999988864 446678889999999999999999999999887544
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHH
Q 047648 362 PSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILV 441 (537)
Q Consensus 362 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 441 (537)
+...+..+..++.+.|++++|...+++..+..+. +..++..+...+...|++++|...++...... +.+...+..+.
T Consensus 236 -~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 312 (388)
T d1w3ba_ 236 -HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLA 312 (388)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHH
Confidence 6778888999999999999999999999987655 78889999999999999999999999998874 67788999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHhc
Q 047648 442 GALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPN-QTTYQIVREEMMEK 520 (537)
Q Consensus 442 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~-~~~~~~l~~~~~~~ 520 (537)
..+...|++++|++.|+++++.. +.+..++..+..+|...|++++|+..|++.++ +.|+ ...+..+...|.+.
T Consensus 313 ~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~ 386 (388)
T d1w3ba_ 313 NIKREQGNIEEAVRLYRKALEVF----PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSC----TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHc
Confidence 99999999999999999997643 34678899999999999999999999999998 5676 56788888888887
Q ss_pred CC
Q 047648 521 GF 522 (537)
Q Consensus 521 g~ 522 (537)
|+
T Consensus 387 ~D 388 (388)
T d1w3ba_ 387 QD 388 (388)
T ss_dssp CC
T ss_pred CC
Confidence 74
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.4e-22 Score=192.36 Aligned_cols=384 Identities=15% Similarity=0.094 Sum_probs=317.7
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCC
Q 047648 69 LLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLK 148 (537)
Q Consensus 69 l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 148 (537)
+.+.+.+.|++++|...++.+++. .|.++.++..+...|.+.|++++|++.|+++.+.+ |
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~-------------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p 64 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQ-------------------EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-P 64 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 456677888899998888887765 25667888899999999999999999999999875 4
Q ss_pred CChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHH
Q 047648 149 SSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILI 228 (537)
Q Consensus 149 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 228 (537)
.+..++..+...+.+.|++++|...+....+.... +..............+....+............. .........
T Consensus 65 ~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 142 (388)
T d1w3ba_ 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLG 142 (388)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHH
T ss_pred CCHHHHHHHHHHhhhhccccccccccccccccccc-cccccccccccccccccccccccccccccccccc-ccccccccc
Confidence 46788999999999999999999999999887543 5556666666677777777777777766655333 444444445
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCC
Q 047648 229 DGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDG 308 (537)
Q Consensus 229 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 308 (537)
..... .+....+...+....... +.+...+..+...+...|++++|...+++..+.. +-+...|..+...+...|
T Consensus 143 ~~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~ 217 (388)
T d1w3ba_ 143 NLLKA---LGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEAR 217 (388)
T ss_dssp HHHHT---TSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred ccccc---cchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccc
Confidence 55555 677888888887777653 2367788888999999999999999999988753 336778889999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 047648 309 KLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRN 388 (537)
Q Consensus 309 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 388 (537)
++++|+..+.+....+ +.+...+..+...+.+.|++++|...|++..+..+. +..++..+..++...|++++|...++
T Consensus 218 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 295 (388)
T d1w3ba_ 218 IFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYN 295 (388)
T ss_dssp CTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred cHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999998865 456778888999999999999999999999887544 67889999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCC
Q 047648 389 SMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKK 468 (537)
Q Consensus 389 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 468 (537)
......+. +...+..+...+...|++++|+..|++.++.. |.+..++..+..+|.+.|++++|++.|++++++.
T Consensus 296 ~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~---- 369 (388)
T d1w3ba_ 296 TALRLCPT-HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS---- 369 (388)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC----
T ss_pred hhhccCCc-cchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Confidence 99887544 78899999999999999999999999998864 4567889999999999999999999999998643
Q ss_pred CCCHHHHHHHHHHHHhcCC
Q 047648 469 WPNIVTYNVLIKGFCQKGK 487 (537)
Q Consensus 469 ~~~~~~~~~l~~~~~~~g~ 487 (537)
+-+...|..++.+|.+.||
T Consensus 370 P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 370 PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCHHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHcCC
Confidence 3367889999999988875
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=4.9e-14 Score=129.30 Aligned_cols=274 Identities=13% Similarity=0.043 Sum_probs=156.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 047648 192 VLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCK 271 (537)
Q Consensus 192 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 271 (537)
....+.+.|++++|+..|+++.+..+ -+..+|..+..++.. .|++++|...+.+..+.... +...+..+...|..
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~---~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~ 99 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAE---NEQELLAISALRRCLELKPD-NQTALMALAVSFTN 99 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH---cCChHHHHHHHHhhhccccc-cccccccccccccc
Confidence 34445555666666666665555431 134455555555555 55555565555555543221 34455555555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 047648 272 DENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVL 351 (537)
Q Consensus 272 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 351 (537)
.|++++|.+.++.+.... |+............. ..+.......+..+...+.+.++...
T Consensus 100 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~ 158 (323)
T d1fcha_ 100 ESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAG-------------------GAGLGPSKRILGSLLSDSLFLEVKEL 158 (323)
T ss_dssp TTCHHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHhc--cchHHHHHhhhhhhh-------------------hcccccchhhHHHHHHhhHHHHHHHH
Confidence 555555555555554431 111100000000000 00000011112223344556677777
Q ss_pred HHHHHHcCC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 047648 352 FDDISEQGL-SPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGM 430 (537)
Q Consensus 352 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 430 (537)
+.+..+..+ .++..++..+...+...|++++|...+++.....+. +..+|..+...+...|++++|.+.|++.++..
T Consensus 159 ~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 236 (323)
T d1fcha_ 159 FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ- 236 (323)
T ss_dssp HHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHh-
Confidence 777665433 234566777778888888888888888888776544 67778888888888888888888888888764
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCC-------CHHHHHHHHHHHHhcCCHHHHHH
Q 047648 431 RAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWP-------NIVTYNVLIKGFCQKGKLEDANG 493 (537)
Q Consensus 431 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~ 493 (537)
+-+..++..++.+|.+.|++++|++.|++++++.+....+ ....|..+-.++...|+.+.+..
T Consensus 237 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 237 PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4456778888888888888888888888888765443222 22355666666666666654433
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=7e-14 Score=128.22 Aligned_cols=250 Identities=12% Similarity=0.058 Sum_probs=158.0
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 047648 268 GFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEK 347 (537)
Q Consensus 268 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 347 (537)
.+.+.|++++|+..|+++.+.. +-+..+|..+..++...|++++|...+.++.+.. +-+...+..+..++...|++++
T Consensus 28 ~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~ 105 (323)
T d1fcha_ 28 RRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQ 105 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccccccc
Confidence 3444444444444444444432 1133444444444444444444444444444432 2233344444444444444444
Q ss_pred HHHHHHHHHHcCCCC--------------CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhc
Q 047648 348 ARVLFDDISEQGLSP--------------SVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGV-LPDVSTYNCLIAGLSRE 412 (537)
Q Consensus 348 a~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~ 412 (537)
|...++......... +.......+..+...+.+.+|...+.+..+..+ .++..++..+...+...
T Consensus 106 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 185 (323)
T d1fcha_ 106 ACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS 185 (323)
T ss_dssp HHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHT
T ss_pred cccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Confidence 444444443321110 000111122234455667888888888876533 34677888999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 047648 413 GNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDAN 492 (537)
Q Consensus 413 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 492 (537)
|++++|+..+++..... +.+...|..+..+|...|++++|++.|++++++. +-+..+|..++.+|.+.|++++|+
T Consensus 186 ~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~a~~~lg~~~~~~g~~~~A~ 260 (323)
T d1fcha_ 186 GEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ----PGYIRSRYNLGISCINLGAHREAV 260 (323)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh----hccHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999998875 4568889999999999999999999999998754 346788999999999999999999
Q ss_pred HHHHHHHHcCCCCC------------HHhHHHHHHHHHhcCCcCCc
Q 047648 493 GLLNELLEKGLIPN------------QTTYQIVREEMMEKGFIPDI 526 (537)
Q Consensus 493 ~~~~~~~~~g~~p~------------~~~~~~l~~~~~~~g~~~~a 526 (537)
..|++.++. .|+ ...+..+-.++...|+.+.+
T Consensus 261 ~~~~~al~l--~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~ 304 (323)
T d1fcha_ 261 EHFLEALNM--QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 304 (323)
T ss_dssp HHHHHHHHH--HHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHh--CCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999999872 232 22455566677777776644
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.34 E-value=2.2e-10 Score=103.39 Aligned_cols=188 Identities=9% Similarity=-0.003 Sum_probs=148.2
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 047648 309 KLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRN 388 (537)
Q Consensus 309 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 388 (537)
..++|..+|++.++...+.+...+...+....+.|+++.|..+|+++.+..+.....+|...+..+.+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 45788888888887644556677788888888999999999999998876544445578888888889999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcC
Q 047648 389 SMLDRGVLPDVSTYNCLIAG-LSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEK 467 (537)
Q Consensus 389 ~~~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 467 (537)
++++.++. +...|...... +...|+.+.|..+|+.+.+.. +.+...|...++.+...|++++|+.+|+++++.. +
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~--~ 234 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG--S 234 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS--S
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--C
Confidence 99887654 44444444333 345688999999999999863 5667889999999999999999999999998633 2
Q ss_pred CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 468 KWP--NIVTYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 468 ~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
..| ....|...+..-...|+.+.+.++++++.+
T Consensus 235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 233 356788888888888999999999999887
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=2e-10 Score=103.72 Aligned_cols=248 Identities=13% Similarity=0.057 Sum_probs=171.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047648 260 VTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDG-KLDEAVALRDEMMASGLKPNVVTSNALING 338 (537)
Q Consensus 260 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 338 (537)
..|+.+...+.+.+.+++|+++++++++.. |-+...|+....++...| ++++|+..++++.+.. +-+..+|..+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 455666666777788888888888887763 225667777777777765 4788888888887764 4467788888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----
Q 047648 339 FCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGN---- 414 (537)
Q Consensus 339 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---- 414 (537)
+.+.|++++|+..+.++.+..+. +...|..+..++...|++++|+..++++++.++. +...|+.+..++.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred HHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchh
Confidence 88888888888888888887554 6778888888888888888888888888887655 67777777766666554
Q ss_pred --HHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhc--CC---
Q 047648 415 --VEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQK--GK--- 487 (537)
Q Consensus 415 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~--- 487 (537)
+++|+..+.+.++.. |.+...|..+...+.. ...+++.+.++.+.++.+. ..+...+..++..|... +.
T Consensus 200 ~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~--~~~~~~~~~l~~~y~~~~~~~~~~ 275 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPS--HSSPYLIAFLVDIYEDMLENQCDN 275 (315)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred hhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCC--cCCHHHHHHHHHHHHHHHhcCHHH
Confidence 567888888887764 4567777777665544 4467778888887765433 33555666666666442 22
Q ss_pred ----HHHHHHHHHHHHHcCCCCCHH-hHHHHHHH
Q 047648 488 ----LEDANGLLNELLEKGLIPNQT-TYQIVREE 516 (537)
Q Consensus 488 ----~~~A~~~~~~~~~~g~~p~~~-~~~~l~~~ 516 (537)
+++|.++++.+.+. +.|-.. -|..+.+.
T Consensus 276 ~~~~~~ka~~l~~~l~~~-~DpiR~~yw~~~~~~ 308 (315)
T d2h6fa1 276 KEDILNKALELCEILAKE-KDTIRKEYWRYIGRS 308 (315)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHH
Confidence 44555555554432 444333 34444433
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=2.5e-09 Score=98.42 Aligned_cols=195 Identities=13% Similarity=0.094 Sum_probs=97.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC--CHHHH
Q 047648 333 NALINGFCKKKLVEKARVLFDDISEQGL----SPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDR----GVLP--DVSTY 402 (537)
Q Consensus 333 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p--~~~~~ 402 (537)
..+...+...|+++.+...+........ ......+......+...+++..+...+...... +..+ ....+
T Consensus 137 ~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~ 216 (366)
T d1hz4a_ 137 RIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN 216 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHH
Confidence 3444455555566666555555543211 112223334444455556666555555544321 1111 11234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhc-CCCC-CHHHHHH
Q 047648 403 NCLIAGLSREGNVEGVRNIMNELVNNGMRA---GLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKE-KKWP-NIVTYNV 477 (537)
Q Consensus 403 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~-~~~~~~~ 477 (537)
..+...+...|+++.|...+++..+..... ....+..+..++...|++++|...+++++..... +..| ...++..
T Consensus 217 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 296 (366)
T d1hz4a_ 217 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLL 296 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHH
Confidence 444555566666666666666555432111 1233445566666667777777766666542221 1112 2345566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc----CCCC----CHHhHHHHHHHHHhcCCcCCcc
Q 047648 478 LIKGFCQKGKLEDANGLLNELLEK----GLIP----NQTTYQIVREEMMEKGFIPDIE 527 (537)
Q Consensus 478 l~~~~~~~g~~~~A~~~~~~~~~~----g~~p----~~~~~~~l~~~~~~~g~~~~a~ 527 (537)
+..+|.+.|++++|.+.+++.++. |... ....+..++..+...|..++++
T Consensus 297 la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e 354 (366)
T d1hz4a_ 297 LNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELE 354 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHH
Confidence 666677777777777777666542 2211 1233445556666666666654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.29 E-value=3.2e-09 Score=97.72 Aligned_cols=297 Identities=11% Similarity=0.024 Sum_probs=169.8
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCC----hhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHC----CCCC-CHHHHHH
Q 047648 194 NGLCKAGKLNKASDIMEDMKSLGVSPK----VVTYNILIDGYCKKGGIGKMYKADAVFKDMVEN----GILP-NEVTFNT 264 (537)
Q Consensus 194 ~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~ 264 (537)
..+...|++++|++++++..+.....+ ...+..+..++.. .|++++|+..+++.... +..+ ....+..
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~---~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 96 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC---KGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 96 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 344455555555555555544321100 1233344444444 55555555555554431 0000 1223444
Q ss_pred HHHHHhccCCHHHHHHHHHHHHh----CCCCCC---hhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----CCCHHHHH
Q 047648 265 LIDGFCKDENISAAMKVFEEMGS----HGIAAG---VVTYNSLINGLCVDGKLDEAVALRDEMMASGL----KPNVVTSN 333 (537)
Q Consensus 265 l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~ 333 (537)
+...+...|++..+...+..... .+.... ...+..+...+...|+++.+...+........ ......+.
T Consensus 97 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 176 (366)
T d1hz4a_ 97 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 176 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHH
Confidence 55556666777777666665432 111111 12344555667777888888777777665321 12234445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----CCCC--CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---CHHHHHH
Q 047648 334 ALINGFCKKKLVEKARVLFDDISEQ----GLSP--SVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLP---DVSTYNC 404 (537)
Q Consensus 334 ~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~ 404 (537)
.....+...++...+...+...... +..+ ....+..+...+...|+++.|...++...+..... ....+..
T Consensus 177 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 256 (366)
T d1hz4a_ 177 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRN 256 (366)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 5566667777777777777665432 1111 12345556667778888999888888876553322 2345666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-hHHHHHHHHHHHhcCChHHHHHHHHHHHHchhc-CCCC----CHHH
Q 047648 405 LIAGLSREGNVEGVRNIMNELVNN----GMRAG-LVTYNILVGALCKDGKSKKAVSLLDEMFKMEKE-KKWP----NIVT 474 (537)
Q Consensus 405 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~----~~~~ 474 (537)
+..++...|++++|...+++.... +..|+ ..++..+..+|...|++++|.+.+++++++... +... ....
T Consensus 257 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~ 336 (366)
T d1hz4a_ 257 IARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEA 336 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHH
Confidence 778888899999999988887642 33333 456778888999999999999999988775322 1111 1223
Q ss_pred HHHHHHHHHhcCCHHHHHH
Q 047648 475 YNVLIKGFCQKGKLEDANG 493 (537)
Q Consensus 475 ~~~l~~~~~~~g~~~~A~~ 493 (537)
+..++..+...++.+++.+
T Consensus 337 ~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 337 MAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHhcCCChHHHH
Confidence 4445555666666665544
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=7.5e-10 Score=99.90 Aligned_cols=216 Identities=11% Similarity=0.018 Sum_probs=175.4
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 047648 295 VTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKK-LVEKARVLFDDISEQGLSPSVITYNTLIDA 373 (537)
Q Consensus 295 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 373 (537)
..++.+...+.+.+.+++|+++++++++.. +-+...|+....++...| ++++|...++...+..+. +..+|..+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHH
Confidence 456666777888999999999999999974 456678888888888876 599999999999988665 78899999999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC----
Q 047648 374 YCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGK---- 449 (537)
Q Consensus 374 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---- 449 (537)
+.+.|++++|+..++++++..+. +...|..+...+...|++++|+..++++++.+ +.+...|+.+..++.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchh
Confidence 99999999999999999998766 89999999999999999999999999999976 5567888888888777665
Q ss_pred --hHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHhHHHHHHHHHh
Q 047648 450 --SKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIP-NQTTYQIVREEMME 519 (537)
Q Consensus 450 --~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p-~~~~~~~l~~~~~~ 519 (537)
+++|++.+.++++.. +.+...|..+...+. ....+++.+.++...+....+ +...+..+...+.+
T Consensus 200 ~~~~~ai~~~~~al~~~----P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLV----PHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp HHHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred hhhHHhHHHHHHHHHhC----CCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 578999999998744 447788887766654 445688889999888744333 23455556666544
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.19 E-value=8.8e-09 Score=92.64 Aligned_cols=190 Identities=12% Similarity=0.048 Sum_probs=150.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047648 273 ENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLF 352 (537)
Q Consensus 273 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 352 (537)
+..++|..+|++..+...+.+...|...+......|+++.|..+|+++.+.........|...+..+.+.|+.+.|..+|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34678889999988764555667788888888999999999999999987643333457888899999999999999999
Q ss_pred HHHHHcCCCCCHhHHHHHHHH-HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-C
Q 047648 353 DDISEQGLSPSVITYNTLIDA-YCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNG-M 430 (537)
Q Consensus 353 ~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~ 430 (537)
.++.+.++. +...|...+.. +...|+.+.|..+|+.+++..+. +...|...+..+...|+++.|..+|++.+... .
T Consensus 158 ~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~-~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 158 KKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 999887544 44445444433 34468899999999999987444 78889999999999999999999999998863 2
Q ss_pred CCC--hHHHHHHHHHHHhcCChHHHHHHHHHHHHch
Q 047648 431 RAG--LVTYNILVGALCKDGKSKKAVSLLDEMFKME 464 (537)
Q Consensus 431 ~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 464 (537)
.|. ...|...+..-...|+.+.+.++++++.+.-
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~ 271 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF 271 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 332 3578888888888999999999999987643
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=1.4e-09 Score=95.45 Aligned_cols=200 Identities=12% Similarity=-0.099 Sum_probs=110.3
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 047648 296 TYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYC 375 (537)
Q Consensus 296 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 375 (537)
+|..+..+|.+.|++++|++.|++.++.. +-+..+|..+..++...|++++|...|+++.+..+. +..++..+..+|.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHHH
Confidence 44555566666677777777666666643 335566666677777777777777777776665433 4455666666777
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC----hH
Q 047648 376 KEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGK----SK 451 (537)
Q Consensus 376 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~~ 451 (537)
..|++++|...++..++..+. +......+...+.+.+..+....+........ ++...++ ++..+..... .+
T Consensus 117 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--KEQWGWN-IVEFYLGNISEQTLME 192 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--CCSTHHH-HHHHHTTSSCHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc--hhhhhhh-HHHHHHHHHHHHHHHH
Confidence 777777777777776665433 44443334444444454444444444444432 2211222 1122211111 22
Q ss_pred HHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 047648 452 KAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQ 507 (537)
Q Consensus 452 ~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 507 (537)
.+...+....... +....+|..+...|...|++++|...|++.++ ..|+.
T Consensus 193 ~~~~~~~~~~~~~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~ 242 (259)
T d1xnfa_ 193 RLKADATDNTSLA----EHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVHN 242 (259)
T ss_dssp HHHHHCCSHHHHH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCTT
T ss_pred HHHHHHHHhhhcC----cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--cCCCC
Confidence 2222222221111 11234666778888888888888888888887 44654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.15 E-value=1.1e-10 Score=106.94 Aligned_cols=235 Identities=5% Similarity=-0.096 Sum_probs=121.7
Q ss_pred cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhccCCHHH
Q 047648 199 AGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFN-TLIDGFCKDENISA 277 (537)
Q Consensus 199 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~ 277 (537)
.|++++|+.+++...+.. +-+...|..+..++...+ .+++++|+..+..+..... ++...+. .....+...+.+++
T Consensus 86 ~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~ 162 (334)
T d1dcea1 86 AALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP-EPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAE 162 (334)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS-SCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhc-cccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHH
Confidence 344455555555555442 113444444444444421 2335555555555554422 1333332 22344445566666
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 278 AMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISE 357 (537)
Q Consensus 278 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 357 (537)
|+..++.+...+. -+...|..+..++.+.|++++|...+....+. .|+ ...+...+...+..+++...+.....
T Consensus 163 Al~~~~~~i~~~p-~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~ 236 (334)
T d1dcea1 163 ELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLL 236 (334)
T ss_dssp HHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 6666665555432 24555555556666666655554444333221 011 11122233444555566666666555
Q ss_pred cCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHH
Q 047648 358 QGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTY 437 (537)
Q Consensus 358 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 437 (537)
..+. +...+..+...+...|++++|...+.+..+.++. +..++..+...+...|+.++|.+.++++.+.. |.+...|
T Consensus 237 ~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld-P~~~~y~ 313 (334)
T d1dcea1 237 GRAE-PLFRCELSVEKSTVLQSELESCKELQELEPENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMRAAYL 313 (334)
T ss_dssp SCCC-CSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC-GGGHHHH
T ss_pred hCcc-hhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-cccHHHH
Confidence 4322 3444555566666667777777777776665433 45566667777777777777777777777653 2234455
Q ss_pred HHHHHHHH
Q 047648 438 NILVGALC 445 (537)
Q Consensus 438 ~~l~~~~~ 445 (537)
..+...+.
T Consensus 314 ~~L~~~~~ 321 (334)
T d1dcea1 314 DDLRSKFL 321 (334)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.14 E-value=3.5e-10 Score=103.52 Aligned_cols=232 Identities=8% Similarity=-0.069 Sum_probs=117.4
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC--CHHHHHHHHHHHHhCCCCCChhhHH-HHHHHHHhCCCHHHHH
Q 047648 238 GKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDE--NISAAMKVFEEMGSHGIAAGVVTYN-SLINGLCVDGKLDEAV 314 (537)
Q Consensus 238 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~ 314 (537)
+.+++|+..++........ +...|..+..++...+ ++++|...+..+.... +.+...+. .....+...+.++.|+
T Consensus 87 ~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al 164 (334)
T d1dcea1 87 ALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEEL 164 (334)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHH
Confidence 3455666666665554322 4444554444444333 3566666666665542 12333332 2334455566666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 047648 315 ALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRG 394 (537)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 394 (537)
..++.+.... +-+...|..+...+.+.|++++|...+....+. .+.. ..+...+...+..+++...+.......
T Consensus 165 ~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~~~l~~~~~a~~~~~~~l~~~ 238 (334)
T d1dcea1 165 AFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV----LLKE-LELVQNAFFTDPNDQSAWFYHRWLLGR 238 (334)
T ss_dssp HHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH----HHHH-HHHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred HHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh----HHHH-HHHHHHHHHhcchhHHHHHHHHHHHhC
Confidence 6666665543 334555666666666666665554444333222 0101 112223344455555565555555543
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHH
Q 047648 395 VLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVT 474 (537)
Q Consensus 395 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 474 (537)
+. +...+..+...+...++.++|...+.+..+.. +.+..++..++.++...|++++|++.++++++++ |.+...
T Consensus 239 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld----P~~~~y 312 (334)
T d1dcea1 239 AE-PLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD----PMRAAY 312 (334)
T ss_dssp CC-CSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC----GGGHHH
T ss_pred cc-hhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC----cccHHH
Confidence 22 33344445555555566666666666655543 2344555666666666666666666666666543 123445
Q ss_pred HHHHHHHHH
Q 047648 475 YNVLIKGFC 483 (537)
Q Consensus 475 ~~~l~~~~~ 483 (537)
|..+...+.
T Consensus 313 ~~~L~~~~~ 321 (334)
T d1dcea1 313 LDDLRSKFL 321 (334)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555544443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.08 E-value=3.3e-09 Score=92.95 Aligned_cols=217 Identities=10% Similarity=-0.104 Sum_probs=134.2
Q ss_pred CHHHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHH
Q 047648 239 KMYKADAVFKDMVENGI-LP--NEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVA 315 (537)
Q Consensus 239 ~~~~a~~~~~~~~~~~~-~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 315 (537)
+.+.++..+.+...... .+ ...+|..+...|.+.|++++|+..|++..+.. +-++.+|..+..++.+.|++++|++
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhh
Confidence 44455555666654321 11 23456667778888888888888888887753 3367778888888888888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 047648 316 LRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGV 395 (537)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 395 (537)
.|+++.+.. +.+..++..+..++...|++++|...|+...+..+. +......+..++.+.+..+.+..+.........
T Consensus 93 ~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (259)
T d1xnfa_ 93 AFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK 170 (259)
T ss_dssp HHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred hhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhccch
Confidence 888888764 334567777888888888888888888888776433 444444444555556655555555555554432
Q ss_pred CCCHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 396 LPDVSTYNCLIAGLSREGN----VEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 396 ~p~~~~~~~l~~~~~~~~~----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
.+. .+. ++..+..... .+.+...+....... +-...+|..+...|...|++++|.+.|++++.
T Consensus 171 ~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 237 (259)
T d1xnfa_ 171 EQW--GWN-IVEFYLGNISEQTLMERLKADATDNTSLA-EHLSETNFYLGKYYLSLGDLDSATALFKLAVA 237 (259)
T ss_dssp CST--HHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hhh--hhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcC-cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 221 111 1222211111 122222221111110 11234667788889999999999999999875
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=2e-07 Score=76.69 Aligned_cols=145 Identities=10% Similarity=-0.015 Sum_probs=105.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCCh
Q 047648 371 IDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKS 450 (537)
Q Consensus 371 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 450 (537)
...+...|+++.|++.|.++ ..|++.+|..+..+|...|++++|+..|++.++.+ +.+...|..+..+|.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence 44566778888888887754 23567777788888888888888888888888765 55677888888888888888
Q ss_pred HHHHHHHHHHHHchhcCC-----------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 047648 451 KKAVSLLDEMFKMEKEKK-----------WP-NIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVREEMM 518 (537)
Q Consensus 451 ~~A~~~~~~~~~~~~~~~-----------~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~~~~~ 518 (537)
++|++.|++++...+... .+ ...++..+..++...|++++|.+.+++..+....|........+..+.
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~~Al~~~~ 166 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVW 166 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence 888888888775321110 01 135667788889999999999999999988665555666666666554
Q ss_pred hc
Q 047648 519 EK 520 (537)
Q Consensus 519 ~~ 520 (537)
+.
T Consensus 167 ~~ 168 (192)
T d1hh8a_ 167 KQ 168 (192)
T ss_dssp TT
T ss_pred hh
Confidence 43
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.74 E-value=1.9e-07 Score=69.73 Aligned_cols=104 Identities=15% Similarity=0.028 Sum_probs=77.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHH
Q 047648 404 CLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFC 483 (537)
Q Consensus 404 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 483 (537)
.-...+.+.|++++|+..|.+.++.. |.+...|..+..+|.+.|++++|+..+++++++. +.++..|..+..++.
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~~g~~~~ 82 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK----PDWGKGYSRKAAALE 82 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc----cchhhHHHHHHHHHH
Confidence 34556677788888888888887764 5667778888888888888888888888887654 447777888888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 047648 484 QKGKLEDANGLLNELLEKGLIPNQTTYQIVR 514 (537)
Q Consensus 484 ~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 514 (537)
..|++++|+..|++.++ +.|+...+...+
T Consensus 83 ~~~~~~~A~~~~~~a~~--~~p~~~~~~~~l 111 (117)
T d1elwa_ 83 FLNRFEEAKRTYEEGLK--HEANNPQLKEGL 111 (117)
T ss_dssp HTTCHHHHHHHHHHHHT--TCTTCHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 88888888888888887 556655444433
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.69 E-value=4.2e-07 Score=80.53 Aligned_cols=127 Identities=13% Similarity=0.042 Sum_probs=63.2
Q ss_pred HHHHhccCCHHHHHHHHHHHHhC----CCC-CChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc----CC-CCCHHHHHHH
Q 047648 266 IDGFCKDENISAAMKVFEEMGSH----GIA-AGVVTYNSLINGLCVDGKLDEAVALRDEMMAS----GL-KPNVVTSNAL 335 (537)
Q Consensus 266 ~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~~~~~~~~~l 335 (537)
...|...|++++|.+.|.++.+. +-+ ....+|..+..+|.+.|++++|++.+++.... |. .....++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 44566677777777777665431 111 11345666666666777777777666655432 10 0012233344
Q ss_pred HHHHHh-cCCHHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 047648 336 INGFCK-KKLVEKARVLFDDISEQ----GLSP-SVITYNTLIDAYCKEGRMEDAFAMRNSMLD 392 (537)
Q Consensus 336 l~~~~~-~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 392 (537)
...|.. .|++++|...+.+..+. +..+ -..++..+...+...|++++|...++++..
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~ 186 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 444432 35666666655554321 1000 112344455555555555555555555544
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=5.7e-07 Score=67.05 Aligned_cols=92 Identities=14% Similarity=0.044 Sum_probs=68.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC
Q 047648 370 LIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGK 449 (537)
Q Consensus 370 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 449 (537)
-...+.+.|++++|+..|++.++..+. +...|..+..++...|++++|+..+.+.++.+ +.+...|..+..++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccC
Confidence 355667777778888877777776555 67777777777777888888888887777765 5567777777778888888
Q ss_pred hHHHHHHHHHHHHc
Q 047648 450 SKKAVSLLDEMFKM 463 (537)
Q Consensus 450 ~~~A~~~~~~~~~~ 463 (537)
+++|+..|+++++.
T Consensus 87 ~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 87 FEEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888877753
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.61 E-value=1.6e-06 Score=76.61 Aligned_cols=213 Identities=10% Similarity=-0.043 Sum_probs=147.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHH
Q 047648 273 ENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMAS----GLKP-NVVTSNALINGFCKKKLVEK 347 (537)
Q Consensus 273 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~ 347 (537)
+++++|.++|.++ ...|...+++++|.+.|.++.+. +-++ -..+|..+..+|.+.|++++
T Consensus 31 ~~~~~Aa~~y~~a---------------a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~ 95 (290)
T d1qqea_ 31 YKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN 95 (290)
T ss_dssp HHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHHHHH---------------HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHH
Confidence 3567777776654 56788999999999999988763 1112 23678889999999999999
Q ss_pred HHHHHHHHHHc----C-CCCCHhHHHHHHHHHH-hcCChHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHH
Q 047648 348 ARVLFDDISEQ----G-LSPSVITYNTLIDAYC-KEGRMEDAFAMRNSMLDR----GVLP-DVSTYNCLIAGLSREGNVE 416 (537)
Q Consensus 348 a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~ 416 (537)
|...+++..+. + ......++..+...|. ..|++++|...+++..+. +..+ -..++..+...+...|+++
T Consensus 96 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~ 175 (290)
T d1qqea_ 96 AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI 175 (290)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHH
Confidence 99999987653 1 1112345666777774 469999999999987642 2111 1346788899999999999
Q ss_pred HHHHHHHHHHHCCCCCCh------HHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCC-CCHHHHHHHHHHHHh--cCC
Q 047648 417 GVRNIMNELVNNGMRAGL------VTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKW-PNIVTYNVLIKGFCQ--KGK 487 (537)
Q Consensus 417 ~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~--~g~ 487 (537)
+|...|+++......... ..+...+..+...|+++.|...++++.+..+.-.. ........++.++-. .+.
T Consensus 176 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~ 255 (290)
T d1qqea_ 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQ 255 (290)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHH
Confidence 999999999886322211 23445566778899999999999998754322100 122345666666655 346
Q ss_pred HHHHHHHHHHHHH
Q 047648 488 LEDANGLLNELLE 500 (537)
Q Consensus 488 ~~~A~~~~~~~~~ 500 (537)
+++|+..|+++.+
T Consensus 256 ~~eai~~y~~~~~ 268 (290)
T d1qqea_ 256 LSEHCKEFDNFMR 268 (290)
T ss_dssp HHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHhh
Confidence 8888888876644
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=7e-07 Score=70.92 Aligned_cols=93 Identities=13% Similarity=0.075 Sum_probs=70.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC
Q 047648 369 TLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDG 448 (537)
Q Consensus 369 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 448 (537)
.....|.+.|++++|+..|++.++..+. +...|..+..+|...|++++|...|++.++.. +.+..+|..++.++...|
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcC
Confidence 3455677778888888888887776654 67777777778888888888888888877764 455677777788888888
Q ss_pred ChHHHHHHHHHHHHc
Q 047648 449 KSKKAVSLLDEMFKM 463 (537)
Q Consensus 449 ~~~~A~~~~~~~~~~ 463 (537)
++++|.+.+++++..
T Consensus 93 ~~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 93 KFRAALRDYETVVKV 107 (159)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc
Confidence 888888888887764
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=1.7e-06 Score=70.85 Aligned_cols=120 Identities=8% Similarity=-0.051 Sum_probs=64.8
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHH
Q 047648 304 LCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDA 383 (537)
Q Consensus 304 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 383 (537)
+...|+++.|++.|.++ .+|+..++..+..+|...|++++|...|++..+.++. +...|..+..+|.+.|++++|
T Consensus 15 ~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHHHH
Confidence 44555566665555443 1344555555555666666666666666665555433 455555556666666666666
Q ss_pred HHHHHHHHhCCCC--------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 047648 384 FAMRNSMLDRGVL--------------P-DVSTYNCLIAGLSREGNVEGVRNIMNELVNN 428 (537)
Q Consensus 384 ~~~~~~~~~~~~~--------------p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 428 (537)
+..|++.+..... + ...++..+..++.+.|++++|.+.+....+.
T Consensus 90 ~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 6665555432110 0 0233445555566666666666666666554
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.61 E-value=5.9e-05 Score=65.17 Aligned_cols=226 Identities=14% Similarity=0.000 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHh----CCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 047648 116 SIIIDMLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVK----EGKFEDVEYVYKEMKRRRIELNLDSFNF 191 (537)
Q Consensus 116 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 191 (537)
|..+..|...+.+.+++++|++.|++..+.| +..++..|...+.. ..+...|...+......+ +......
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~ 75 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 75 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhc
Confidence 4556667788888899999999999988765 55666667777765 557788888888877765 3344444
Q ss_pred HHHHHHh----cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhc-CCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 047648 192 VLNGLCK----AGKLNKASDIMEDMKSLGVSPKVVTYNILIDGYCK-KGGIGKMYKADAVFKDMVENGILPNEVTFNTLI 266 (537)
Q Consensus 192 l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 266 (537)
+...+.. .++.+.|...++...+.|. ......+...+.. .........+...+...... .+...+..+.
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~ 149 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILG 149 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhh
Confidence 4444433 4567778888887777652 2222222222221 11245566666666666554 2455566666
Q ss_pred HHHhc----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047648 267 DGFCK----DENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCV----DGKLDEAVALRDEMMASGLKPNVVTSNALING 338 (537)
Q Consensus 267 ~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 338 (537)
..+.. ..+...+..+++...+.| +..+...+...|.. ..+++.|+..|.+..+.| ++..+..|..+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~ 223 (265)
T d1ouva_ 150 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 223 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred hhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHH
Confidence 65553 345666666666665543 44444444444443 445666666666666654 33444445555
Q ss_pred HHh----cCCHHHHHHHHHHHHHcC
Q 047648 339 FCK----KKLVEKARVLFDDISEQG 359 (537)
Q Consensus 339 ~~~----~~~~~~a~~~~~~~~~~~ 359 (537)
|.. ..+.++|.+.|++..+.|
T Consensus 224 y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 224 QYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHcCCCCccCHHHHHHHHHHHHHCc
Confidence 543 225566666666665554
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=7.6e-07 Score=70.69 Aligned_cols=101 Identities=10% Similarity=0.044 Sum_probs=88.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHH
Q 047648 402 YNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKG 481 (537)
Q Consensus 402 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 481 (537)
+......|.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|++.|++++++. +.+..+|..++.+
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~----p~~~~a~~~~g~~ 87 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD----KKYIKGYYRRAAS 87 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc----ccchHHHHHHHHH
Confidence 4455677889999999999999999986 6678999999999999999999999999999754 4477899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHh
Q 047648 482 FCQKGKLEDANGLLNELLEKGLIPNQTT 509 (537)
Q Consensus 482 ~~~~g~~~~A~~~~~~~~~~g~~p~~~~ 509 (537)
|...|++++|...+++.... .|+...
T Consensus 88 ~~~~g~~~eA~~~~~~a~~~--~p~~~~ 113 (159)
T d1a17a_ 88 NMALGKFRAALRDYETVVKV--KPHDKD 113 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--STTCHH
T ss_pred HHHcCCHHHHHHHHHHHHHc--CCCCHH
Confidence 99999999999999999994 466433
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.59 E-value=0.00014 Score=62.64 Aligned_cols=225 Identities=11% Similarity=-0.028 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----CCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 047648 259 EVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCV----DGKLDEAVALRDEMMASGLKPNVVTSNA 334 (537)
Q Consensus 259 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 334 (537)
+..+..|...+.+.+++++|+++|++..+.| +...+..|...|.. ..++..|...+......+ +......
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~ 75 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 75 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhc
Confidence 4455556666666777777777777776654 44555555555554 456777777777766654 2333333
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047648 335 LINGFCK----KKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCK----EGRMEDAFAMRNSMLDRGVLPDVSTYNCLI 406 (537)
Q Consensus 335 ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 406 (537)
+...+.. ..+.+.|...++...+.|.. .....+...+.. ......+...+......+ +...+..+.
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L~ 149 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 149 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhhh
Confidence 3333332 34667777777776665432 222223333332 334566666666665542 556666666
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh----cCChHHHHHHHHHHHHchhcCCCCCHHHHHHH
Q 047648 407 AGLSR----EGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCK----DGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVL 478 (537)
Q Consensus 407 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l 478 (537)
..+.. ..+...+...++...+.| +......+...|.. ..++++|+..|+++.+. -++..+..|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~------g~~~a~~~L 220 (265)
T d1ouva_ 150 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL------ENGGGCFNL 220 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT------TCHHHHHHH
T ss_pred hhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhcc------cCHHHHHHH
Confidence 66664 456667777777777654 45555566666655 56788888888888752 245566677
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHcCCC
Q 047648 479 IKGFCQ----KGKLEDANGLLNELLEKGLI 504 (537)
Q Consensus 479 ~~~~~~----~g~~~~A~~~~~~~~~~g~~ 504 (537)
...|.+ ..+.++|.+.|++..+.|..
T Consensus 221 G~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 221 GAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 777765 34788899999888887744
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.54 E-value=9.3e-07 Score=73.38 Aligned_cols=99 Identities=12% Similarity=0.013 Sum_probs=61.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 047648 327 PNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLI 406 (537)
Q Consensus 327 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 406 (537)
|+...+......+.+.|++++|...|.+..+..+. +...|..+..+|.+.|++++|+..++..++..+. +..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence 44555555666666666666666666666655433 5556666666666666666666666666655433 455666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 047648 407 AGLSREGNVEGVRNIMNELVN 427 (537)
Q Consensus 407 ~~~~~~~~~~~a~~~~~~~~~ 427 (537)
.+|...|++++|...|++..+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 666666666666666666554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.53 E-value=6.5e-07 Score=74.35 Aligned_cols=103 Identities=13% Similarity=0.044 Sum_probs=92.0
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHH
Q 047648 362 PSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILV 441 (537)
Q Consensus 362 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 441 (537)
|+...+......|.+.|++++|+..|++.++..+. ++..|..+..+|.+.|++++|+..|++.++.. +-+..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 67778888899999999999999999999988765 88899999999999999999999999999864 44678899999
Q ss_pred HHHHhcCChHHHHHHHHHHHHchhc
Q 047648 442 GALCKDGKSKKAVSLLDEMFKMEKE 466 (537)
Q Consensus 442 ~~~~~~g~~~~A~~~~~~~~~~~~~ 466 (537)
.+|...|++++|+..|++++++.+.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~ 104 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKE 104 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 9999999999999999999886654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.43 E-value=1.4e-06 Score=64.24 Aligned_cols=89 Identities=10% Similarity=0.021 Sum_probs=57.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHh
Q 047648 405 LIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQ 484 (537)
Q Consensus 405 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 484 (537)
+...+.+.|++++|+..|++.++.. |-+...|..+..++.+.|++++|+..|++++++. +.+..+|..+..+|..
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD----PKDIAVHAALAVSHTN 96 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc----cccccchHHHHHHHHH
Confidence 4455566667777777776666654 3356666666667777777777777777766543 3356666667777777
Q ss_pred cCCHHHHHHHHHHH
Q 047648 485 KGKLEDANGLLNEL 498 (537)
Q Consensus 485 ~g~~~~A~~~~~~~ 498 (537)
.|++++|++.+++.
T Consensus 97 ~g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 97 EHNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 77777777776665
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=4.9e-06 Score=62.95 Aligned_cols=106 Identities=10% Similarity=0.111 Sum_probs=72.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCC---HHHHHHH
Q 047648 402 YNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPN---IVTYNVL 478 (537)
Q Consensus 402 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~~~~l 478 (537)
+..+...+...|++++|+..|.+.++.+ +.+...+..+..+|.+.|++++|++.+++++++.+....+- ..+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 4456666777777777777777777764 45667777777788888888888888887776554432221 2356667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhH
Q 047648 479 IKGFCQKGKLEDANGLLNELLEKGLIPNQTTY 510 (537)
Q Consensus 479 ~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~ 510 (537)
...+...+++++|++.|++.+.. .|+....
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 115 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLAE--HRTPDVL 115 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CCCHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc--CCCHHHH
Confidence 77777788888888888887763 3454443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=8.3e-07 Score=66.35 Aligned_cols=105 Identities=14% Similarity=0.094 Sum_probs=69.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCC---hHHHHHHHHHHHHchhcCCCCC-HHHHHHHH
Q 047648 404 CLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGK---SKKAVSLLDEMFKMEKEKKWPN-IVTYNVLI 479 (537)
Q Consensus 404 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~-~~~~~~l~ 479 (537)
.++..+...+++++|.+.|++.+..+ +.++.++..+..++.+.++ +++|+.+|+++++.. ..|+ ..+|..+.
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~---~~~~~~~~~~~Lg 79 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG---SKEEQRDYVFYLA 79 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS---CHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc---CCchHHHHHHHHH
Confidence 45666667777777777777777765 5566777777777766444 345777777775421 1122 23666777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 047648 480 KGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVR 514 (537)
Q Consensus 480 ~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 514 (537)
.+|.+.|++++|++.|+++++ +.|+..-...+.
T Consensus 80 ~~y~~~g~~~~A~~~~~~aL~--~~P~~~~A~~l~ 112 (122)
T d1nzna_ 80 VGNYRLKEYEKALKYVRGLLQ--TEPQNNQAKELE 112 (122)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHH--hCcCCHHHHHHH
Confidence 788888888888888888887 557655444433
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.38 E-value=1.9e-06 Score=63.43 Aligned_cols=91 Identities=8% Similarity=-0.049 Sum_probs=70.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC
Q 047648 369 TLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDG 448 (537)
Q Consensus 369 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 448 (537)
.+...+.+.|++++|...+++.++..+. ++.+|..+..++.+.|++++|+..+++.++.. |.+..++..+..+|...|
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g 98 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 98 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCC
Confidence 3556677788888888888888776554 67788888888888888888888888887764 556777888888888888
Q ss_pred ChHHHHHHHHHHH
Q 047648 449 KSKKAVSLLDEMF 461 (537)
Q Consensus 449 ~~~~A~~~~~~~~ 461 (537)
++++|.+.+++.+
T Consensus 99 ~~~~A~~~l~~~l 111 (112)
T d1hxia_ 99 NANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 8888888887753
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=3.2e-06 Score=63.07 Aligned_cols=100 Identities=12% Similarity=0.036 Sum_probs=79.3
Q ss_pred HHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCCh---hHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 047648 121 MLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKF---EDVEYVYKEMKRRRIELN-LDSFNFVLNGL 196 (537)
Q Consensus 121 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 196 (537)
.+++.+...+++++|.+.|++.+..+ +.+..++..+..++.+.++. ++|..+|+++...+..|+ ..++..+..+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 57788888999999999999999876 55778888888888876654 568999999887754444 34677888999
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhh
Q 047648 197 CKAGKLNKASDIMEDMKSLGVSPKVVT 223 (537)
Q Consensus 197 ~~~g~~~~a~~~~~~~~~~~~~~~~~~ 223 (537)
.+.|++++|++.|+++++. .|+..-
T Consensus 83 ~~~g~~~~A~~~~~~aL~~--~P~~~~ 107 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQT--EPQNNQ 107 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHhhhHHHHHHHHHHHHh--CcCCHH
Confidence 9999999999999999886 455443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=1.4e-05 Score=63.81 Aligned_cols=97 Identities=9% Similarity=-0.018 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-C-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 047648 365 ITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLP-D-------------VSTYNCLIAGLSREGNVEGVRNIMNELVNNGM 430 (537)
Q Consensus 365 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 430 (537)
..+......+.+.|++++|+..|.+.++..... . ..+|+.+..+|.+.|++++|+..++..++.+
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~- 92 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD- 92 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc-
Confidence 345556667888888888888888877542110 0 1233334444555555555555555555543
Q ss_pred CCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 431 RAGLVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 431 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
|.++..+..++.+|...|++++|+..|+++++
T Consensus 93 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 93 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33445555555555555555555555555544
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.23 E-value=2.9e-05 Score=60.64 Aligned_cols=119 Identities=17% Similarity=0.107 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHH
Q 047648 366 TYNTLIDAYCKEGRMEDAFAMRNSMLDRGVL----PDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILV 441 (537)
Q Consensus 366 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 441 (537)
.+..-...+.+.|++.+|+..|.+.++.-.. ++..... ... .....+|..+.
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~-----------------~~~-------~~~~~~~~Nla 74 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLD-----------------KKK-------NIEISCNLNLA 74 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHH-----------------HHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHH-----------------hhh-------hHHHHHHhhHH
Confidence 4455566677777777777777776653111 0111000 000 01124677788
Q ss_pred HHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 047648 442 GALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQTTYQIVR 514 (537)
Q Consensus 442 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~~~~~l~ 514 (537)
.+|.+.|++++|++.+++++++. +.++.+|..++.++...|++++|+..|++.++ +.|+.......+
T Consensus 75 ~~~~~l~~~~~Al~~~~~al~~~----p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n~~~~~~l 141 (153)
T d2fbna1 75 TCYNKNKDYPKAIDHASKVLKID----KNNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDIRNSY 141 (153)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHH
T ss_pred HHHHHhcccchhhhhhhcccccc----chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 89999999999999999998754 45788999999999999999999999999998 557655443333
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.17 E-value=4.3e-05 Score=60.87 Aligned_cols=112 Identities=10% Similarity=-0.070 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--------------CHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 047648 331 TSNALINGFCKKKLVEKARVLFDDISEQGLSP--------------SVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVL 396 (537)
Q Consensus 331 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 396 (537)
.+......+.+.|++++|...|.+..+..... -..+|+.+..+|.+.|++++|+..++..++.++.
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~ 94 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 94 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcccc
Confidence 34455566777777777777777776542110 0134555667777777777777777777776544
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 047648 397 PDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGAL 444 (537)
Q Consensus 397 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 444 (537)
++.++..+..++...|++++|...|++..+.. |.+..+...+..+.
T Consensus 95 -~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~ 140 (170)
T d1p5qa1 95 -NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ 140 (170)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred -chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 67777777777777777777777777777754 23444444444443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.12 E-value=0.0024 Score=56.07 Aligned_cols=277 Identities=12% Similarity=0.041 Sum_probs=127.6
Q ss_pred HHHHHHHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 047648 121 MLMLAYVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAG 200 (537)
Q Consensus 121 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 200 (537)
.++..|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+.+.+.. +..+|..+...+.+..
T Consensus 19 ~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~~~~ 83 (336)
T d1b89a_ 19 QVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGK 83 (336)
T ss_dssp ----------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHHhCc
Confidence 455566667777777777765432 4556666667777776666654331 5556666666666655
Q ss_pred ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 047648 201 KLNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMK 280 (537)
Q Consensus 201 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 280 (537)
...-+ .+.......+......++..|-. .|.+++...++...... -.++...++.++..|++.+ .++..+
T Consensus 84 e~~la-----~i~~~~~~~~~d~l~~~v~~ye~---~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~~kl~e 153 (336)
T d1b89a_ 84 EFRLA-----QMCGLHIVVHADELEELINYYQD---RGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQKMRE 153 (336)
T ss_dssp CHHHH-----HHTTTTTTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-HHHHHH
T ss_pred HHHHH-----HHHHHHhhcCHHHHHHHHHHHHH---cCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-hHHHHH
Confidence 44332 12222223344444556666666 66666666666655432 2335555666666666643 233333
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047648 281 VFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVALRDEMMAS--------GLKPNVVTSNALINGFCKKKLVEKARVLF 352 (537)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 352 (537)
.+.... +......++..|.+.+-++++.-++.++... ..+++..-...++..+.+..+.+.
T Consensus 154 ~l~~~s------~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N~e~----- 222 (336)
T d1b89a_ 154 HLELFW------SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVEL----- 222 (336)
T ss_dssp HHHHHS------TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHH-----
T ss_pred HHHhcc------ccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHccCChHH-----
Confidence 332221 1111222333333333333333333322110 001222222223333333333333
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 047648 353 DDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRA 432 (537)
Q Consensus 353 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 432 (537)
|-.++..|... +++-...++..+... + |+ ..++..+.+.+++.....+++.....+
T Consensus 223 --------------~~~~i~~yL~~-~p~~i~~lL~~v~~~-~--d~---~r~V~~~~k~~~l~li~p~Le~v~~~n--- 278 (336)
T d1b89a_ 223 --------------YYRAIQFYLEF-KPLLLNDLLMVLSPR-L--DH---TRAVNYFSKVKQLPLVKPYLRSVQNHN--- 278 (336)
T ss_dssp --------------HHHHHHHHHHH-CGGGHHHHHHHHGGG-C--CH---HHHHHHHHHTTCTTTTHHHHHHHHTTC---
T ss_pred --------------HHHHHHHHHHc-CHHHHHHHHHHhccC-C--CH---HHHHHHHHhcCCcHHHHHHHHHHHHcC---
Confidence 33333333322 122222222222221 1 11 234445556666666777776655544
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHH
Q 047648 433 GLVTYNILVGALCKDGKSKKAVSLL 457 (537)
Q Consensus 433 ~~~~~~~l~~~~~~~g~~~~A~~~~ 457 (537)
+..+.+++...|...++++.-++..
T Consensus 279 ~~~vn~al~~lyie~~d~~~l~~~i 303 (336)
T d1b89a_ 279 NKSVNESLNNLFITEEDYQALRTSI 303 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHhCcchhHHHHHHH
Confidence 3467888888888888865544444
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.04 E-value=0.00013 Score=58.35 Aligned_cols=127 Identities=17% Similarity=0.120 Sum_probs=87.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcC
Q 047648 369 TLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDG 448 (537)
Q Consensus 369 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 448 (537)
.........|++++|...|...+..-..+ .. ......+-+...-..+.. .....+..+..++.+.|
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~rG~-~l---------~~~~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g 81 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREWRGP-VL---------DDLRDFQFVEPFATALVE----DKVLAHTAKAEAEIACG 81 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCSS-TT---------GGGTTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCccc-cc---------ccCcchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCC
Confidence 34456778899999999998888752110 00 000000011111111111 12356778899999999
Q ss_pred ChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHhHHHH
Q 047648 449 KSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLE-----KGLIPNQTTYQIV 513 (537)
Q Consensus 449 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~g~~p~~~~~~~l 513 (537)
++++|+..++++++.. +-+...|..++.+|.+.|++.+|++.|+++.+ .|+.|...+-...
T Consensus 82 ~~~~Al~~~~~al~~~----P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l~ 147 (179)
T d2ff4a2 82 RASAVIAELEALTFEH----PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 147 (179)
T ss_dssp CHHHHHHHHHHHHHHS----TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred CchHHHHHHHHHHHhC----CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHH
Confidence 9999999999999755 45889999999999999999999999999854 6999998764443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=4.7e-05 Score=57.27 Aligned_cols=95 Identities=13% Similarity=0.158 Sum_probs=66.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC-----hHHHHHH
Q 047648 367 YNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMR-AG-----LVTYNIL 440 (537)
Q Consensus 367 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-----~~~~~~l 440 (537)
+..+...+.+.|++++|+..|++.++.++. +...+..+..+|.+.|++++|+..++++++.... +. ..+|..+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 445666777777778888777777776554 6777777777777788888888877777654210 11 2356667
Q ss_pred HHHHHhcCChHHHHHHHHHHHH
Q 047648 441 VGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 441 ~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
...+...+++++|++.|++.+.
T Consensus 86 g~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHh
Confidence 7777788888888888887764
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.01 E-value=0.0038 Score=54.72 Aligned_cols=280 Identities=11% Similarity=0.072 Sum_probs=155.9
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHHHHHHHHhh
Q 047648 65 LTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFTSVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGFEAFKRAGD 144 (537)
Q Consensus 65 ~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 144 (537)
-...++..|.+.|.++.|..++..+. -|..++..+.+.++++.|++++.+..
T Consensus 16 d~~~i~~~c~~~~lye~A~~lY~~~~---------------------------d~~rl~~~~v~l~~~~~avd~~~k~~- 67 (336)
T d1b89a_ 16 HIQQVGDRCYDEKMYDAAKLLYNNVS---------------------------NFGRLASTLVHLGEYQAAVDGARKAN- 67 (336)
T ss_dssp -------------CTTTHHHHHHHTT---------------------------CHHHHHHHHHTTTCHHHHHHHHHHHT-
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHhCC---------------------------CHHHHHHHHHhhccHHHHHHHHHHcC-
Confidence 34556677777777777777665321 14457788899999999998887552
Q ss_pred CCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhH
Q 047648 145 YGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCKAGKLNKASDIMEDMKSLGVSPKVVTY 224 (537)
Q Consensus 145 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 224 (537)
+..+|..+...|.+..+...+ .+.......++.....++..|-..|.+++...+++...... .++...+
T Consensus 68 -----~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~ 136 (336)
T d1b89a_ 68 -----STRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMF 136 (336)
T ss_dssp -----CHHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHH
T ss_pred -----CHHHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHH
Confidence 567888899999888776543 22233334467777889999999999999999999876542 4567788
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhC--------CCCCChhh
Q 047648 225 NILIDGYCKKGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSH--------GIAAGVVT 296 (537)
Q Consensus 225 ~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~ 296 (537)
+.++..|++ .+ .++..+.++.. . +......++..|-+.+-++++.-++..+... ..++++.-
T Consensus 137 ~~L~~lyak---~~-~~kl~e~l~~~--s----~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~ 206 (336)
T d1b89a_ 137 TELAILYSK---FK-PQKMREHLELF--W----SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWK 206 (336)
T ss_dssp HHHHHHHHT---TC-HHHHHHHHHHH--S----TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCC
T ss_pred HHHHHHHHH---hC-hHHHHHHHHhc--c----ccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhhhh
Confidence 899999998 44 33433333332 1 1111223444555555555555444443221 01223333
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh
Q 047648 297 YNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCK 376 (537)
Q Consensus 297 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 376 (537)
....+..+.+..+++...++.....+. .| ...+.++......-+..+ ++..+-+
T Consensus 207 ~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p--~~i~~lL~~v~~~~d~~r----------------------~V~~~~k 260 (336)
T d1b89a_ 207 EGQFKDIITKVANVELYYRAIQFYLEF--KP--LLLNDLLMVLSPRLDHTR----------------------AVNYFSK 260 (336)
T ss_dssp HHHHHHHHHHCSSTHHHHHHHHHHHHH--CG--GGHHHHHHHHGGGCCHHH----------------------HHHHHHH
T ss_pred HHHHHHHHHccCChHHHHHHHHHHHHc--CH--HHHHHHHHHhccCCCHHH----------------------HHHHHHh
Confidence 444455555555555555555544432 12 223333333333333333 3334444
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 047648 377 EGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIM 422 (537)
Q Consensus 377 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 422 (537)
.++.......++...+.+ +..+.+++...|...++++.-.+..
T Consensus 261 ~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i 303 (336)
T d1b89a_ 261 VKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSI 303 (336)
T ss_dssp TTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHHHH
Confidence 555555556666655544 3457777788888877765544333
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=7.2e-06 Score=78.31 Aligned_cols=113 Identities=10% Similarity=-0.042 Sum_probs=49.9
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 047648 364 VITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGA 443 (537)
Q Consensus 364 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 443 (537)
...+..+...+.+.|+.+.|...+....... ...++..++..+...|++++|...|++..+.. |.+...|+.+...
T Consensus 120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~ 195 (497)
T d1ya0a1 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAIL 195 (497)
T ss_dssp -----------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHH
T ss_pred HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHH
Confidence 3445555555566666666665555544321 12345555666666666666666666666553 3445566666666
Q ss_pred HHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHh
Q 047648 444 LCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQ 484 (537)
Q Consensus 444 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 484 (537)
+...|+..+|+..|.+++... +|-..++..|...+.+
T Consensus 196 ~~~~~~~~~A~~~y~ral~~~----~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 196 ASSKGDHLTTIFYYCRSIAVK----FPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHTTCHHHHHHHHHHHHSSS----BCCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHH
Confidence 666666666666666665422 3455555555555443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.99 E-value=0.00022 Score=55.39 Aligned_cols=125 Identities=12% Similarity=0.022 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047648 330 VTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGL 409 (537)
Q Consensus 330 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 409 (537)
..+..-...+.+.|++.+|...|.+..+.-..... .. +.... ..... ....+|..+..+|
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~-------------~~-~~~~~--~~~~~----~~~~~~~Nla~~~ 77 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEE-------------WD-DQILL--DKKKN----IEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTT-------------CC-CHHHH--HHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhh-------------hh-hHHHH--Hhhhh----HHHHHHhhHHHHH
Confidence 44556677888999999999999998764211000 00 00000 00000 0234666788888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHH
Q 047648 410 SREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLI 479 (537)
Q Consensus 410 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~ 479 (537)
.+.|++++|+..+++.++.+ |.+..+|..++.++...|++++|+..|++++++. |-|..+...+.
T Consensus 78 ~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~----P~n~~~~~~l~ 142 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN----PNNLDIRNSYE 142 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS----TTCHHHHHHHH
T ss_pred HHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHH
Confidence 88888888888888888875 5677888888888889999999999998888754 22455544443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.97 E-value=6.6e-05 Score=59.70 Aligned_cols=76 Identities=14% Similarity=0.050 Sum_probs=58.0
Q ss_pred ChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-hHH
Q 047648 433 GLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQT-TYQ 511 (537)
Q Consensus 433 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~~-~~~ 511 (537)
....|..+..++.+.|++++|+..+.+++++. +.++..|..++.+|...|++++|+..|+++++ +.|+.. ...
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~----p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~--l~p~n~~~~~ 149 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID----PSNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQA 149 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhh----hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHH
Confidence 34566777888888899999999998888654 44778888888889999999999999998888 456543 343
Q ss_pred HHH
Q 047648 512 IVR 514 (537)
Q Consensus 512 ~l~ 514 (537)
.+.
T Consensus 150 ~l~ 152 (169)
T d1ihga1 150 ELL 152 (169)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.96 E-value=0.0002 Score=56.71 Aligned_cols=98 Identities=8% Similarity=-0.040 Sum_probs=49.9
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCCH-----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047648 364 VITYNTLIDAYCKEGRMEDAFAMRNSMLDR---GVLPDV-----------STYNCLIAGLSREGNVEGVRNIMNELVNNG 429 (537)
Q Consensus 364 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 429 (537)
...+......+.+.|++++|...|++.+.. ...++. .+|..+..+|.+.|++++|+..+++.++..
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~ 94 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 94 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence 345556667777888888888888776542 111111 122233344444455555555554444443
Q ss_pred CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 430 MRAGLVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 430 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
+.+..+|..+..++...|++++|...|+++++
T Consensus 95 -p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~ 126 (168)
T d1kt1a1 95 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 126 (168)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33444444444455555555555555554443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.95 E-value=8.1e-05 Score=59.18 Aligned_cols=82 Identities=10% Similarity=-0.072 Sum_probs=63.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCCCHHHHHH
Q 047648 398 DVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWPNIVTYNV 477 (537)
Q Consensus 398 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 477 (537)
....|..+..++.+.|++++|+..+.++++.. +.+...|..+..+|...|++++|++.|++++++. +.+..+...
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~----p~n~~~~~~ 150 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA----PEDKAIQAE 150 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC----CCCHHHHHH
Confidence 34466777888889999999999999998875 5677888999999999999999999999998754 335566666
Q ss_pred HHHHHHh
Q 047648 478 LIKGFCQ 484 (537)
Q Consensus 478 l~~~~~~ 484 (537)
+..+..+
T Consensus 151 l~~~~~~ 157 (169)
T d1ihga1 151 LLKVKQK 157 (169)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554433
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.93 E-value=3.7e-06 Score=80.36 Aligned_cols=112 Identities=14% Similarity=-0.119 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 047648 330 VTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGL 409 (537)
Q Consensus 330 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 409 (537)
..+..+...+.+.|+.+.|...+....... ...++..+...+...|++++|...+++..+..+. +...|+.+...+
T Consensus 121 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~ 196 (497)
T d1ya0a1 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILA 196 (497)
T ss_dssp ----------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHH
T ss_pred HHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHH
Confidence 334444444555555555554444433221 1233444555555555666666666555554433 445555565555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh
Q 047648 410 SREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCK 446 (537)
Q Consensus 410 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 446 (537)
...|+..+|...|.+.+... +|-..++..|...+.+
T Consensus 197 ~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 197 SSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence 55666666666665555543 3445555555554443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.90 E-value=0.00026 Score=55.98 Aligned_cols=113 Identities=9% Similarity=-0.017 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCC-----------HhHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 047648 330 VTSNALINGFCKKKLVEKARVLFDDISEQ---GLSPS-----------VITYNTLIDAYCKEGRMEDAFAMRNSMLDRGV 395 (537)
Q Consensus 330 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 395 (537)
..+......+.+.|++++|...|.+.... ....+ ..+|..+..+|.+.|++++|+..++..++..+
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p 95 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS 95 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhccc
Confidence 34455556666667777777766665432 11111 12244455566666777777777766666544
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 047648 396 LPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGAL 444 (537)
Q Consensus 396 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 444 (537)
. +...|..+..++...|++++|...|+++++.. |.+..+...+..+.
T Consensus 96 ~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~ 142 (168)
T d1kt1a1 96 A-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQ 142 (168)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHH
T ss_pred c-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3 56666666666777777777777777666653 33444444443333
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.87 E-value=0.0002 Score=57.10 Aligned_cols=116 Identities=12% Similarity=0.011 Sum_probs=65.2
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHC--CCCC-------ChHHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHHH
Q 047648 66 TGRLLHSLVVAKKYPKIRSFLHMFVKN--GKFT-------SVSTIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLGF 136 (537)
Q Consensus 66 ~~~l~~~~~~~~~~~~a~~l~~~~~~~--g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 136 (537)
...........|++++|...+...+.. |.+. .+...-..+. ......+..++..+...|++++|+
T Consensus 14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~------~~~~~a~~~la~~~~~~g~~~~Al 87 (179)
T d2ff4a2 14 EKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALV------EDKVLAHTAKAEAEIACGRASAVI 87 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHH------HHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHH------HHHHHHHHHHHHHHHHCCCchHHH
Confidence 344556667788888888877777664 2211 1111111111 112244555666666666666666
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHh-----CCCCCCHHH
Q 047648 137 EAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKR-----RRIELNLDS 188 (537)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 188 (537)
..+++++... +-+...|..++.++.+.|+.++|++.|+++.+ .|+.|...+
T Consensus 88 ~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 88 AELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 6666666653 34556666666666666666666666666532 355555443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.81 E-value=3e-05 Score=59.80 Aligned_cols=71 Identities=8% Similarity=-0.131 Sum_probs=35.0
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------CHHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 047648 375 CKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREG----------NVEGVRNIMNELVNNGMRAGLVTYNILVGAL 444 (537)
Q Consensus 375 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 444 (537)
-+.+.+++|...++..++..+. ++.++..+..++...+ .+++|+..|++.++.+ |.+..+|..+..+|
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y 85 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 85 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHH
Confidence 3445566666666666665444 5556666655554332 2334444444444432 23334444444444
Q ss_pred Hhc
Q 047648 445 CKD 447 (537)
Q Consensus 445 ~~~ 447 (537)
...
T Consensus 86 ~~~ 88 (145)
T d1zu2a1 86 TSF 88 (145)
T ss_dssp HHH
T ss_pred HHc
Confidence 443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.68 E-value=0.00013 Score=56.11 Aligned_cols=116 Identities=8% Similarity=0.005 Sum_probs=78.3
Q ss_pred HHHcCCchHHHHHHHHHhhCCCCCChhhHHHHHHHHHhC----------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 047648 126 YVKNMKPHLGFEAFKRAGDYGLKSSVLSCNQLLRALVKE----------GKFEDVEYVYKEMKRRRIELNLDSFNFVLNG 195 (537)
Q Consensus 126 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 195 (537)
|-+.+.+++|++.|+...+.. |.+..++..+..++... +.+++|...|++..+..+. +..+|..+..+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~ 84 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNA 84 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhHHHH
Confidence 455667889999999998875 55777888888777644 3456788888888876543 67778888877
Q ss_pred HHhcCC-----------hhHHHHHHHHHHhCCCCCChhhHHHHHHHHhcCCCCCCHHHHHHHHHHHHHCC
Q 047648 196 LCKAGK-----------LNKASDIMEDMKSLGVSPKVVTYNILIDGYCKKGGIGKMYKADAVFKDMVENG 254 (537)
Q Consensus 196 ~~~~g~-----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~a~~~~~~~~~~~ 254 (537)
|...|+ +++|.+.|++..+. .|+...|...+..+.+ |.+++.+..+.|
T Consensus 85 y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~~k---------a~~~~~e~~k~~ 143 (145)
T d1zu2a1 85 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMTAK---------APQLHAEAYKQG 143 (145)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHT---------HHHHHHHHHHSS
T ss_pred HHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHHHH---------HHHHHHHHHHHh
Confidence 766543 46677777777765 4666666555544433 455555555544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.63 E-value=0.00043 Score=53.91 Aligned_cols=95 Identities=11% Similarity=-0.024 Sum_probs=67.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC-CC----------ChHHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCC--C--
Q 047648 406 IAGLSREGNVEGVRNIMNELVNNGM-RA----------GLVTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKW--P-- 470 (537)
Q Consensus 406 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~-- 470 (537)
...+...|++++|+..|++.++... -| ....|+.+..+|.+.|++++|++.+++++++.+.... +
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 3344556777777777777665310 01 1356788888999999999999999988875432111 1
Q ss_pred ---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 471 ---NIVTYNVLIKGFCQKGKLEDANGLLNELLE 500 (537)
Q Consensus 471 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 500 (537)
...++..+..+|...|++++|+..|++.++
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 123567788999999999999999999876
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.63 E-value=5.9e-05 Score=64.58 Aligned_cols=123 Identities=13% Similarity=0.012 Sum_probs=75.7
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHhcCChHHH
Q 047648 374 YCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILVGALCKDGKSKKA 453 (537)
Q Consensus 374 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 453 (537)
..+.|++++|+..+++.++..+. |...+..+...++..|++++|...++...+.. +-+...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHH
Confidence 34567888888888888877665 77788888888888888888888888887753 22344444444444333333322
Q ss_pred HHHHHHHHHchhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 047648 454 VSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQKGKLEDANGLLNELLEK 501 (537)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 501 (537)
........ ..+-+++...+......+...|+.++|...++++.+.
T Consensus 84 ~~~~~~~~---~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAK---VLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEE---CCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhh---cccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 22111100 0111223344445556677888999999988888874
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.56 E-value=0.00065 Score=47.51 Aligned_cols=71 Identities=18% Similarity=0.184 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHchhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 047648 435 VTYNILVGALCKDGKSKKAVSLLDEMFKMEKEKKWP---NIVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPNQ 507 (537)
Q Consensus 435 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~~ 507 (537)
..+-.++..+.+.|++++|+..|++++++.+....+ ...++..+..++.+.|++++|+..++++++ +.|+.
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~--l~P~~ 79 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH 79 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH--hCcCC
Confidence 344456777788888888888888877654432221 246777888888888888888888888888 55664
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.54 E-value=8.3e-05 Score=63.62 Aligned_cols=120 Identities=9% Similarity=-0.022 Sum_probs=54.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 047648 341 KKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRN 420 (537)
Q Consensus 341 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 420 (537)
+.|++++|...+++..+..+. +...+..+...++..|++++|...++...+..+. +...+..+...+...+..+++..
T Consensus 8 ~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~~a~~ 85 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARKDFAQ 85 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccccHHHHH
Confidence 445566666666655555433 5555556666666666666666666665554322 23333333333222222111111
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 047648 421 IMNELVNNGMRAGLVTYNILVGALCKDGKSKKAVSLLDEMFK 462 (537)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 462 (537)
-.......+-+++...+......+...|+.++|.+.++++.+
T Consensus 86 ~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e 127 (264)
T d1zbpa1 86 GAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 127 (264)
T ss_dssp SCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 100000001112223333344556666667777766666655
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.29 E-value=0.0041 Score=48.01 Aligned_cols=95 Identities=13% Similarity=0.107 Sum_probs=62.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCC-C----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCC-
Q 047648 371 IDAYCKEGRMEDAFAMRNSMLDRGVL-P----------DVSTYNCLIAGLSREGNVEGVRNIMNELVNN-----GMRAG- 433 (537)
Q Consensus 371 ~~~~~~~g~~~~A~~~~~~~~~~~~~-p----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~- 433 (537)
...+.+.|++++|+..|++.++.... | ....|+.+..+|...|++++|...+++.++. ...++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 34455667777777777776643111 1 1346777777788888888888877777642 11111
Q ss_pred ----hHHHHHHHHHHHhcCChHHHHHHHHHHHHchh
Q 047648 434 ----LVTYNILVGALCKDGKSKKAVSLLDEMFKMEK 465 (537)
Q Consensus 434 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 465 (537)
..++..+..+|...|++++|++.|++++++.+
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~ 131 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 131 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 23567778889999999999999998887543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.93 E-value=0.006 Score=42.27 Aligned_cols=66 Identities=14% Similarity=0.090 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCC-hHHHHHHHHHHHhcCChHHHHHHHHHHHHch
Q 047648 399 VSTYNCLIAGLSREGNVEGVRNIMNELVNNG-----MRAG-LVTYNILVGALCKDGKSKKAVSLLDEMFKME 464 (537)
Q Consensus 399 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 464 (537)
...+..++..+.+.|++++|+..|++.++.. ..++ ..++..+..++.+.|++++|++.+++++++.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~ 76 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence 3444566777777777777777777776531 1111 4567778888888888888888888887654
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.61 E-value=0.036 Score=41.00 Aligned_cols=82 Identities=11% Similarity=-0.059 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----CC
Q 047648 237 IGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCK----DENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCV----DG 308 (537)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 308 (537)
..+.++|++.+++..+.| +......|...|.. ..+.++|.++|++..+.| ++.....|...|.. ..
T Consensus 36 ~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~ 109 (133)
T d1klxa_ 36 QINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVK 109 (133)
T ss_dssp TSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred ccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCC
Confidence 344555555555555543 23333333333332 234455555555554443 22333333333332 23
Q ss_pred CHHHHHHHHHHHHHcC
Q 047648 309 KLDEAVALRDEMMASG 324 (537)
Q Consensus 309 ~~~~A~~~~~~~~~~~ 324 (537)
+.++|.++|++..+.|
T Consensus 110 d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 110 NEKQAVKTFEKACRLG 125 (133)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 4444444444444433
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.35 E-value=0.07 Score=39.31 Aligned_cols=81 Identities=9% Similarity=-0.054 Sum_probs=43.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHHh----cCChHHHHHHHHHHHHchhcCCCCCHHHHHHHHHHHHh----
Q 047648 413 GNVEGVRNIMNELVNNGMRAGLVTYNILVGALCK----DGKSKKAVSLLDEMFKMEKEKKWPNIVTYNVLIKGFCQ---- 484 (537)
Q Consensus 413 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 484 (537)
.+.++|...+++..+.| ++.....|...|.. ..+.++|.++|++..+. -++.....|...|..
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~------g~~~a~~~Lg~~y~~G~gv 107 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL------NDQDGCLILGYKQYAGKGV 107 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT------TCHHHHHHHHHHHHHTSSS
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc------CcchHHHHHHHHHHcCCcc
Confidence 34555555555555544 23333444444433 34566677777666541 134444455555544
Q ss_pred cCCHHHHHHHHHHHHHcC
Q 047648 485 KGKLEDANGLLNELLEKG 502 (537)
Q Consensus 485 ~g~~~~A~~~~~~~~~~g 502 (537)
..+.++|.++|++..+.|
T Consensus 108 ~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 108 VKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp CCCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHCC
Confidence 346777777777776665
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.06 E-value=0.52 Score=42.97 Aligned_cols=116 Identities=9% Similarity=-0.007 Sum_probs=67.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHH
Q 047648 308 GKLDEAVALRDEMMASGLKPNVVTSNALI----NGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDA 383 (537)
Q Consensus 308 ~~~~~A~~~~~~~~~~~~~~~~~~~~~ll----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 383 (537)
.+.+.|..++........ .+......+- ......+..+.+...+......+. +.......+......+++..+
T Consensus 228 ~d~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~ 304 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGL 304 (450)
T ss_dssp HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHH
T ss_pred cChhHHHHHHHhhhhccc-ccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChHHH
Confidence 467777777777665432 2222222222 222234556667777666655432 333333444555667788888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 047648 384 FAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVN 427 (537)
Q Consensus 384 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 427 (537)
...+..|... ........--+.+++...|+.+.|...|..+..
T Consensus 305 ~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 305 NTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 8877776543 222344555667777888888888888887654
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.97 E-value=0.65 Score=32.76 Aligned_cols=62 Identities=16% Similarity=0.252 Sum_probs=30.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 047648 367 YNTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNG 429 (537)
Q Consensus 367 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 429 (537)
++..++.+.+.|+-+.-.++++.+.+. -+|++...-.+..+|.+.|...++.+++.+.-+.|
T Consensus 89 vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 89 VNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 333444445555555555555554442 23445555555555555555555555555555444
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.52 E-value=0.74 Score=32.65 Aligned_cols=79 Identities=16% Similarity=0.165 Sum_probs=52.0
Q ss_pred CCChHHHHHHHHHHHhcCC---hHHHHHHHHHHHHchhcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 047648 431 RAGLVTYNILVGALCKDGK---SKKAVSLLDEMFKMEKEKKWPN-IVTYNVLIKGFCQKGKLEDANGLLNELLEKGLIPN 506 (537)
Q Consensus 431 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~p~ 506 (537)
.++..+--....++.+..+ .++++.+++++.+.. +.+ ...+-.|..+|.+.|++++|.+.++.+++ +.|+
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~----p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~ 105 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA----ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN 105 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC----GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTT
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC----chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCC
Confidence 3555566666667766544 457888888776421 223 35667777788888888888888888888 6677
Q ss_pred HHhHHHHHH
Q 047648 507 QTTYQIVRE 515 (537)
Q Consensus 507 ~~~~~~l~~ 515 (537)
..-...+..
T Consensus 106 n~qA~~L~~ 114 (124)
T d2pqrb1 106 NKQVGALKS 114 (124)
T ss_dssp CHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 655444433
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.43 E-value=0.48 Score=33.68 Aligned_cols=68 Identities=15% Similarity=0.124 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHhcCChHHHHHHHHHHHHch
Q 047648 396 LPDVSTYNCLIAGLSREG---NVEGVRNIMNELVNNGMRAGL-VTYNILVGALCKDGKSKKAVSLLDEMFKME 464 (537)
Q Consensus 396 ~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 464 (537)
.|...+-.....++.+.. +.++++.+++++.+.+ +.+. ..+-.|.-+|.+.|++++|++.++.+++++
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie 103 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 103 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 345555555555555543 3456777777766543 2232 344556666777777777777777777643
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=91.29 E-value=4.9 Score=36.08 Aligned_cols=334 Identities=6% Similarity=-0.124 Sum_probs=192.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHCCCCC-Ch-HHHHHHhhhccCCCCchHHHHHHHHHHHHHcCCchHH
Q 047648 58 RASHSLLLTGRLLHSLVVAKKYPKIRSFLHMFVKNGKFT-SV-STIFHALSTCSDSLCRNSIIIDMLMLAYVKNMKPHLG 135 (537)
Q Consensus 58 ~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~~~~~~g~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 135 (537)
..|.+...-.....++...|+-++|...++.+...|... .. ..+|..+...+ ..++..+-.-+......|++..|
T Consensus 97 ~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~~---~lt~~~~~~R~~~~l~~~~~~~a 173 (450)
T d1qsaa1 97 EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASG---KQDPLAYLERIRLAMKAGNTGLV 173 (450)
T ss_dssp SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTT---CSCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcCChhhH
Confidence 356677777788888889999999999888888776543 23 33455554432 23344444455666677888877
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--cCChhHHHHHHHHHH
Q 047648 136 FEAFKRAGDYGLKSSVLSCNQLLRALVKEGKFEDVEYVYKEMKRRRIELNLDSFNFVLNGLCK--AGKLNKASDIMEDMK 213 (537)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~ 213 (537)
..+...+.. .........+.... +...+..... .. ..+......+..++.+ ..+.+.+..++....
T Consensus 174 ~~l~~~l~~----~~~~~~~a~~~l~~---~p~~~~~~~~---~~--~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~ 241 (450)
T d1qsaa1 174 TVLAGQMPA----DYQTIASAIISLAN---NPNTVLTFAR---TT--GATDFTRQMAAVAFASVARQDAENARLMIPSLA 241 (450)
T ss_dssp HHHHHTCCG----GGHHHHHHHHHHHH---CGGGHHHHHH---HS--CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHhhCCh----hHHHHHHHHHHHHh---ChHhHHHHHh---cC--CCChhhhHHHHHHHHHHhccChhHHHHHHHhhh
Confidence 777654422 12223333333322 2223322221 11 1233333333333333 357888999888877
Q ss_pred hCCCCCChhhHHHHHHHHhc-CCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC
Q 047648 214 SLGVSPKVVTYNILIDGYCK-KGGIGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAA 292 (537)
Q Consensus 214 ~~~~~~~~~~~~~ll~~~~~-~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 292 (537)
..... +...+...-..... ....+..+.+...+......+. +.......+......+++..+...+..|... ...
T Consensus 242 ~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~ 317 (450)
T d1qsaa1 242 QAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGLNTWLARLPME-AKE 317 (450)
T ss_dssp HHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGG
T ss_pred hcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChHHHHHHHHhcCcc-ccc
Confidence 64322 22222222222221 1114666778777777766543 4444455566677789999999999887643 222
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCH-h---HH
Q 047648 293 GVVTYNSLINGLCVDGKLDEAVALRDEMMASGLKPNVVTSNALINGFCKKKL-VEKARVLFDDISEQGLSPSV-I---TY 367 (537)
Q Consensus 293 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~-~---~~ 367 (537)
.....--+.+++...|+.+.|...|..+.. .++ |-.++.+-. .|. +.-.. ......+.. . .-
T Consensus 318 ~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~---fYG~LAa~~-Lg~~~~~~~------~~~~~~~~~~~~~~~~ 384 (450)
T d1qsaa1 318 KDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG---FYPMVAAQR-IGEEYELKI------DKAPQNVDSALTQGPE 384 (450)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS---HHHHHHHHH-TTCCCCCCC------CCCCSCCCCHHHHSHH
T ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC---hHHHHHHHH-cCCCCCCCc------CCCCccHHHhhhcChH
Confidence 344445677889999999999999998864 233 333332221 121 10000 000000000 0 01
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 047648 368 NTLIDAYCKEGRMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELV 426 (537)
Q Consensus 368 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 426 (537)
..-+..+...|+...|...|..+.... +......+.....+.|.++.|+....+..
T Consensus 385 ~~ra~~L~~~g~~~~A~~e~~~l~~~~---~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 385 MARVRELMYWNLDNTARSEWANLVKSK---SKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCchHHHHHHHHHHhCC---CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 123456778899999999998887642 55566777888889999999998776653
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=90.32 E-value=2.1 Score=30.16 Aligned_cols=138 Identities=12% Similarity=0.077 Sum_probs=69.3
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhCCCHHHHHHH
Q 047648 237 IGKMYKADAVFKDMVENGILPNEVTFNTLIDGFCKDENISAAMKVFEEMGSHGIAAGVVTYNSLINGLCVDGKLDEAVAL 316 (537)
Q Consensus 237 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 316 (537)
.|..++..+++.+.... .+..-||.++--....-+-+...++++.+-+. .|. ...++.......
T Consensus 15 dG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDl----------s~C~Nlk~vv~C 78 (161)
T d1wy6a1 15 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVEC 78 (161)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHHH
T ss_pred hhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cCc----------hhhhcHHHHHHH
Confidence 35566666666665543 24445555555444444555555555544331 111 112222333322
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 047648 317 RDEMMASGLKPNVVTSNALINGFCKKKLVEKARVLFDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSMLDRGVL 396 (537)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 396 (537)
+-.+- .+...+...++.....|.-++..+++..+.+. -.+++...-.+..+|.+.|...++-+++.+.-+.|.+
T Consensus 79 ~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 79 GVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 22211 23334444455566666666666666665553 3445566666666666666666666666666666544
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.64 E-value=2.7 Score=27.96 Aligned_cols=39 Identities=10% Similarity=0.159 Sum_probs=15.6
Q ss_pred HHHHHHcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 047648 352 FDDISEQGLSPSVITYNTLIDAYCKEGRMEDAFAMRNSM 390 (537)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 390 (537)
++.+...+..|++.+..+.+.+|.+.+++..|.++++-+
T Consensus 29 mN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~v 67 (105)
T d1v54e_ 29 MNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVV 67 (105)
T ss_dssp HHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333333333344444444444444444444444444333
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.66 E-value=4 Score=27.11 Aligned_cols=62 Identities=8% Similarity=0.143 Sum_probs=38.3
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHH
Q 047648 379 RMEDAFAMRNSMLDRGVLPDVSTYNCLIAGLSREGNVEGVRNIMNELVNNGMRAGLVTYNILV 441 (537)
Q Consensus 379 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 441 (537)
+.-+..+-++.+......|++.+..+.+++|.+.+++..|.++++-.+... .++...|..++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yil 82 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 82 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHH
Confidence 344555566666666677777777777777777777777777777666541 22334454443
|