Citrus Sinensis ID: 047680

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------
Protein Sequence
MCTSFKAYLTASHLSDLAVLSAVLLKQNLEPCSLTKKLFPTGFYAAIRASMLCFYSYVVASGGNPPPNKLKSSAAAAS
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccccHccccccccc
Coil and Loop (DISEMBL)
MCTSFKAYLTASHLSDLAVLSAVLLKqnlepcsltkklfptGFYAAIRASMLCFYSYVvasggnpppnklkssaaaas
Flexible Loop (DISEMBL)
MCTSFKAYLTASHLSDLAVLSAVLLKQNLEPCSLTKKLFPTGFYAAIRASMLCFYSYVVASggnpppnklkssaaaas
Low Complexity Region (SEG)
MCTSFKAYLTashlsdlavlsavllKQNLEPCSLTKKLFPTGFYAAIRASMLCFYSYVVASGGNPPPNKLKSSAAAAS
Disordered region (IsUnstruct)
****FKAYLTASHLSDLAVLSAVLLKQNLEPCSLTKKLFPTGFYAAIRASMLCFYSYVVA******************
Disordered Region (DISOPRED)
*******YLTASHLSDLAVLSAVLLKQNLEPCSLTKKLFPTGFYAAIRASMLCFYSYVVASG****************
Disordered Region (DISEMBL)
MCTSFKAYLTASHLSDLAVLSAVLLKQNLEPCSLTKKLFPTGFYAAIRASMLCFYSYVVASGGNPP************
Disordered Region (DISPRO)
*CTSFKAYLTASHLSDLAVLSAVLLKQNLEPCSLTKKLFPTGFYAAIRASMLCFYSYVVASGGNP*************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHHHooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MCTSFKAYLTASHLSDLAVLSAVLLKQNLEPCSLTKKLFPTGFYAAIRASMLCFYSYVVASGGNPPPNKLKSSAAAAS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	78
133711807	230	hypothetical protein LYC_68t000010 [Sola	0.769	0.260	0.666	2e-15
359496051	229	PREDICTED: uncharacterized protein LOC10	0.782	0.266	0.655	8e-15
6735307	239	hypothetical protein [Arabidopsis thalia	0.935	0.305	0.573	3e-14
224074301	217	predicted protein [Populus trichocarpa]	0.782	0.281	0.655	6e-14
297817046	239	hypothetical protein ARALYDRAFT_324236 [	0.935	0.305	0.546	1e-13
18410685	226	Transmembrane proteins 14C [Arabidopsis	0.782	0.269	0.655	2e-13
255583841	222	transmembrane protein 14, putative [Rici	0.769	0.270	0.633	4e-13
224138968	219	predicted protein [Populus trichocarpa]	0.782	0.278	0.622	5e-13
108936786	231	hypothetical protein 11 [Plantago major]	0.782	0.264	0.639	8e-13
388520441	229	unknown [Lotus japonicus]	0.769	0.262	0.616	1e-12

>gi|133711807|gb|ABO36625.1| hypothetical protein LYC_68t000010 [Solanum lycopersicum]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 40/60 (66%), Positives = 49/60 (81%)

Query: 18  AVLSAVLLKQNLEPCSLTKKLFPTGFYAAIRASMLCFYSYVVASGGNPPPNKLKSSAAAA 77
           AVL+A LL +N++  SLT KLFPTGF+AAI A+M CFYSYV+ SGGNPPP KLK+S + A
Sbjct: 170 AVLAATLLWKNMQTFSLTGKLFPTGFFAAISAAMFCFYSYVILSGGNPPPKKLKASTSGA 229

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496051|ref|XP_002284565.2| PREDICTED: uncharacterized protein LOC100255501 [Vitis vinifera] gi|296087051|emb|CBI33378.3| unnamed protein product [Vitis vinifera]

 Score = 84.3 bits (207), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 40/61 (65%), Positives = 48/61 (78%)

Query: 18  AVLSAVLLKQNLEPCSLTKKLFPTGFYAAIRASMLCFYSYVVASGGNPPPNKLKSSAAAA 77
           AVLSA L  +N +  SLTKKLFPTGF+A I A+MLCFYSYV+ SGGNPPP KLK++   +
Sbjct: 169 AVLSAALFWKNFQTYSLTKKLFPTGFFAIISAAMLCFYSYVMISGGNPPPKKLKATERHS 228

Query: 78  S 78
           S
Sbjct: 229 S 229

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6735307|emb|CAB68134.1| hypothetical protein [Arabidopsis thaliana]

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/75 (57%), Positives = 52/75 (69%), Gaps = 2/75 (2%)

Query: 6   KAYLTASHLS--DLAVLSAVLLKQNLEPCSLTKKLFPTGFYAAIRASMLCFYSYVVASGG 63
           +A    +H S  ++AVLSAV+  +N    S+TKKLFP G +A I A MLCFYSYVV SGG
Sbjct: 164 QAAFVLTHFSKPEIAVLSAVVFWKNFTAYSMTKKLFPAGVFAVISACMLCFYSYVVLSGG 223

Query: 64  NPPPNKLKSSAAAAS 78
           NPPP KLK SA + S
Sbjct: 224 NPPPKKLKPSATSPS 238

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074301|ref|XP_002304345.1| predicted protein [Populus trichocarpa] gi|222841777|gb|EEE79324.1| predicted protein [Populus trichocarpa]

 Score = 81.6 bits (200), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 40/61 (65%), Positives = 47/61 (77%)

Query: 18  AVLSAVLLKQNLEPCSLTKKLFPTGFYAAIRASMLCFYSYVVASGGNPPPNKLKSSAAAA 77
           AVL+A L   N    SLTKKL PTGF+A I A+MLCFYSYV+ SGGNPPP KL+SSA+ +
Sbjct: 157 AVLAAALCWNNFRAYSLTKKLIPTGFFAVISAAMLCFYSYVMISGGNPPPKKLQSSASVS 216

Query: 78  S 78
           S
Sbjct: 217 S 217

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817046|ref|XP_002876406.1| hypothetical protein ARALYDRAFT_324236 [Arabidopsis lyrata subsp. lyrata] gi|297322244|gb|EFH52665.1| hypothetical protein ARALYDRAFT_324236 [Arabidopsis lyrata subsp. lyrata]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/75 (54%), Positives = 51/75 (68%), Gaps = 2/75 (2%)

Query: 6   KAYLTASHLS--DLAVLSAVLLKQNLEPCSLTKKLFPTGFYAAIRASMLCFYSYVVASGG 63
           +A    +H S  ++AVLSAV+  +N    S+TKKLFP G +  I A MLCFY+YVV SGG
Sbjct: 164 QAAFVLTHFSKPEIAVLSAVVFWKNFTAYSMTKKLFPAGLFTVISACMLCFYTYVVLSGG 223

Query: 64  NPPPNKLKSSAAAAS 78
           NPPP KLK SA + S
Sbjct: 224 NPPPKKLKPSATSPS 238

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18410685|ref|NP_567046.1| Transmembrane proteins 14C [Arabidopsis thaliana] gi|14517381|gb|AAK62581.1| AT3g57280/F28O9_130 [Arabidopsis thaliana] gi|15450539|gb|AAK96447.1| AT3g57280/F28O9_130 [Arabidopsis thaliana] gi|21553454|gb|AAM62547.1| unknown [Arabidopsis thaliana] gi|332646114|gb|AEE79635.1| Transmembrane proteins 14C [Arabidopsis thaliana]

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/61 (65%), Positives = 45/61 (73%)

Query: 18  AVLSAVLLKQNLEPCSLTKKLFPTGFYAAIRASMLCFYSYVVASGGNPPPNKLKSSAAAA 77
           AVLSAV+  +N    S+TKKLFP G +A I A MLCFYSYVV SGGNPPP KLK SA + 
Sbjct: 165 AVLSAVVFWKNFTAYSMTKKLFPAGVFAVISACMLCFYSYVVLSGGNPPPKKLKPSATSP 224

Query: 78  S 78
           S
Sbjct: 225 S 225

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583841|ref|XP_002532672.1| transmembrane protein 14, putative [Ricinus communis] gi|223527605|gb|EEF29719.1| transmembrane protein 14, putative [Ricinus communis]

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/60 (63%), Positives = 46/60 (76%)

Query: 18  AVLSAVLLKQNLEPCSLTKKLFPTGFYAAIRASMLCFYSYVVASGGNPPPNKLKSSAAAA 77
           AVLSA L  ++ +  SLTKKL PTGFYA I A+MLCF+SYV+ SGGNPPP KL+SS   +
Sbjct: 163 AVLSAALSWKHFQAYSLTKKLIPTGFYAVISAAMLCFFSYVMISGGNPPPKKLQSSTVGS 222

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224138968|ref|XP_002326735.1| predicted protein [Populus trichocarpa] gi|222834057|gb|EEE72534.1| predicted protein [Populus trichocarpa]

 Score = 78.2 bits (191), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 38/61 (62%), Positives = 44/61 (72%)

Query: 18  AVLSAVLLKQNLEPCSLTKKLFPTGFYAAIRASMLCFYSYVVASGGNPPPNKLKSSAAAA 77
           AVL+A L   N    SLTKK+ PTGF+A I A+MLCFYSYV+ SGGNPPP KL+ SA   
Sbjct: 159 AVLAAALCWNNFRAYSLTKKVIPTGFFAVISAAMLCFYSYVMISGGNPPPKKLQESAGVN 218

Query: 78  S 78
           S
Sbjct: 219 S 219

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|108936786|emb|CAJ34819.1| hypothetical protein 11 [Plantago major]

 Score = 77.8 bits (190), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 39/61 (63%), Positives = 45/61 (73%)

Query: 18  AVLSAVLLKQNLEPCSLTKKLFPTGFYAAIRASMLCFYSYVVASGGNPPPNKLKSSAAAA 77
           AVL+  LL +NL+  SL  KLFPTGF   + A+MLCFY YVV SGGNPPP KLKSSA  A
Sbjct: 170 AVLAVALLLKNLKTYSLNPKLFPTGFNIVVSAAMLCFYCYVVLSGGNPPPKKLKSSAVGA 229

Query: 78  S 78
           +
Sbjct: 230 A 230

Source: Plantago major

Species: Plantago major

Genus: Plantago

Family: Plantaginaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388520441|gb|AFK48282.1| unknown [Lotus japonicus]

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/60 (61%), Positives = 45/60 (75%)

Query: 18  AVLSAVLLKQNLEPCSLTKKLFPTGFYAAIRASMLCFYSYVVASGGNPPPNKLKSSAAAA 77
           A LS +L+ +N +  SL KKLFPTGF A I ++MLCFY YV+ SGGNPPP KLK SA+ A
Sbjct: 170 AALSGILIWKNFQSYSLAKKLFPTGFTAIISSAMLCFYLYVLISGGNPPPKKLKPSASVA 229

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	78
TAIR|locus:2082578	226	AT3G57280 "AT3G57280" [Arabido	0.666	0.230	0.653	1.6e-13
TAIR|locus:2085780	119	AT3G20510 [Arabidopsis thalian	0.461	0.302	0.527	6.3e-05
TAIR|locus:2033177	119	AT1G50740 "AT1G50740" [Arabido	0.448	0.294	0.485	0.00035

TAIR|locus:2082578 AT3G57280 "AT3G57280" [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 34/52 (65%), Positives = 38/52 (73%)

Query:    27 QNLEPCSLTKKLFPTGFYAAIRASMLCFYSYVVASGGNPPPNKLKSSAAAAS 78
             +N    S+TKKLFP G +A I A MLCFYSYVV SGGNPPP KLK SA + S
Sbjct:   174 KNFTAYSMTKKLFPAGVFAVISACMLCFYSYVVLSGGNPPPKKLKPSATSPS 225

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2085780 AT3G20510 [Arabidopsis thaliana (taxid:3702)]

 Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
 Identities = 19/36 (52%), Positives = 22/36 (61%)

Query:    34 LTKKLFPTGFYAAIRASMLCFYSYVVASGGNPPPNK 69
             LT K+ P G  A I A M CFY Y +A+GGN  P K
Sbjct:    82 LTGKIMPAGLVAGISALMTCFYVYKIATGGNKFPAK 117

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

TAIR|locus:2033177 AT1G50740 "AT1G50740" [Arabidopsis thaliana (taxid:3702)]

 Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
 Identities = 17/35 (48%), Positives = 21/35 (60%)

Query:    35 TKKLFPTGFYAAIRASMLCFYSYVVASGGNPPPNK 69
             T+K+ P    A I A M CFY Y +A+GGN  P K
Sbjct:    83 TQKIMPAALVAGISALMTCFYVYKIATGGNHIPPK 117


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.129   0.388    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       78        63   0.00091  102 3  11 22  0.38    28
                                                     29  0.42    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  425 (45 KB)
  Total size of DFA:  76 KB (2063 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  6.55u 0.15s 6.70t   Elapsed:  00:00:00
  Total cpu time:  6.55u 0.15s 6.70t   Elapsed:  00:00:00
  Start:  Mon May 20 15:07:14 2013   End:  Mon May 20 15:07:14 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	78
KOG4267	110	consensus Predicted membrane protein [Function unk	99.74
PF03647	96	Tmemb_14: Transmembrane proteins 14C; InterPro: IP	99.17
COG5548	105	Small integral membrane protein [Function unknown]	95.05

>KOG4267 consensus Predicted membrane protein [Function unknown]

Probab=99.74  E-value=3.9e-18  Score=116.16  Aligned_cols=55  Identities=40%  Similarity=0.576  Sum_probs=52.8

Q ss_pred             HHHHHHH-HHHHHHHHhhhhhhccCccchhHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 047680           13 HLSDLAV-LSAVLLKQNLEPCSLTKKLFPTGFYAAIRASMLCFYSYVVASGGNPPP   67 (78)
Q Consensus        13 ~i~~s~~-~S~~L~~vMg~Rf~~t~KlmPAGlva~lS~~M~~fy~y~ll~GGNppp   67 (78)
                      .++++++ +|++|+.+||+||++|||+||+|+++++|++|.|||.|++++++||||
T Consensus        55 ~~~~~l~~~s~~L~gvmg~R~~~s~K~mPaglva~~s~~m~~~Y~y~~~~~~~~~~  110 (110)
T KOG4267|consen   55 GSLVALGGTSAALLGVMGQRFYRSRKIMPAGLVAGISLLMTCFYLYVVLRGGNPPP  110 (110)
T ss_pred             CchhHHHHHHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence            6778888 899999999999999999999999999999999999999999999987

>PF03647 Tmemb_14: Transmembrane proteins 14C; InterPro: IPR005349 This family of short membrane proteins is as yet uncharacterised

Probab=99.17  E-value=1.6e-11  Score=80.36  Aligned_cols=46  Identities=30%  Similarity=0.342  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhccCccchhHHHHHHHHHHHHHHHH
Q 047680           12 SHLSDLAVLSAVLLKQNLEPCSLTKKLFPTGFYAAIRASMLCFYSY   57 (78)
Q Consensus        12 ~~i~~s~~~S~~L~~vMg~Rf~~t~KlmPAGlva~lS~~M~~fy~y   57 (78)
                      ....+++++|++|+.+|+.||.+|+|+||+|+++++|++|++||.|
T Consensus        51 ~~~~~~l~~s~~L~~~m~~R~~~t~k~~Pagl~~~~s~~~~~~y~Y   96 (96)
T PF03647_consen   51 WGSELALAISAVLAGVMGYRYIKTRKFMPAGLMALLSGAMLAFYYY   96 (96)
T ss_dssp             HCCHHHHHHHHHHHHCCTSSS-SSSSSCCCHHHHHHHHHHHHHHC-
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHhcC
Confidence            4566789999999999999999999999999999999999999986

; GO: 0016020 membrane; PDB: 2LOS_A 2LOO_A 2LOP_A.

>COG5548 Small integral membrane protein [Function unknown]

Probab=95.05  E-value=0.032  Score=38.04  Aligned_cols=36  Identities=25%  Similarity=0.133  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHhhhhhhccCccchhHHHHHHHHHHH
Q 047680           17 LAVLSAVLLKQNLEPCSLTKKLFPTGFYAAIRASML   52 (78)
Q Consensus        17 s~~~S~~L~~vMg~Rf~~t~KlmPAGlva~lS~~M~   52 (78)
                      ..+.|++|...-+-|+++|||.+|+++.+.....-.
T Consensus        59 A~~~s~~Ll~~~~~R~~~sRKpvP~~Lt~lgg~~s~   94 (105)
T COG5548          59 ATVVSAALLVFFALRLVRSRKPVPAGLTTLGGMLSL   94 (105)
T ss_pred             HHHHHHHHHHhcchhccccCCCcchHHHHHhhhhhh
Confidence            467899999999999999999999999887654443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	78
2loo_A	108	Transmembrane protein 14A; helical bundle; NMR {Ho	99.26
2los_A	121	Transmembrane protein 14C; paramagnetic relaxation	99.18

>2loo_A Transmembrane protein 14A; helical bundle; NMR {Homo sapiens} PDB: 2lop_A

Probab=99.26  E-value=1.3e-15  Score=101.61  Aligned_cols=50  Identities=14%  Similarity=0.113  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhccCccchhHHHHHHHHHHHHHHHHHHh
Q 047680           11 ASHLSDLAVLSAVLLKQNLEPCSLTKKLFPTGFYAAIRASMLCFYSYVVA   60 (78)
Q Consensus        11 ~~~i~~s~~~S~~L~~vMg~Rf~~t~KlmPAGlva~lS~~M~~fy~y~ll   60 (78)
                      .+++++|+++|++|+++|++||.+|+|+||+|+++++|++|++||.|+++
T Consensus        59 ~~~~~l~l~~S~~L~~~m~~R~~~t~K~mPaGl~a~lS~~m~~~y~~~l~  108 (108)
T 2loo_A           59 KRDVKVSLFTAFFLATIMGVRFKRSKKIMPAGLVAGLSLMMILRLVLLLL  108 (108)
Confidence            34788999999999999999999999999999999999999999999975

>2los_A Transmembrane protein 14C; paramagnetic relaxation enhancement, helic; NMR {Homo sapiens}

Probab=99.18  E-value=6.5e-15  Score=100.12  Aligned_cols=50  Identities=14%  Similarity=0.050  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhccCccchhHHHHHHHHHHHHHHHHHHhc
Q 047680           12 SHLSDLAVLSAVLLKQNLEPCSLTKKLFPTGFYAAIRASMLCFYSYVVAS   61 (78)
Q Consensus        12 ~~i~~s~~~S~~L~~vMg~Rf~~t~KlmPAGlva~lS~~M~~fy~y~ll~   61 (78)
                      ...++++++|++|+++|++||.+|+|+||+|+++++|++|++||.|++++
T Consensus        69 ~~~~l~l~~S~~L~~~mg~R~~~t~K~mPaGlva~lS~~m~~~~~~~ll~  118 (121)
T 2los_A           69 RNVWVFLATSGTLAGIMGMRFYHSGKFMPAGLIAGASLLMVAKVGVSMFN  118 (121)
Confidence            35678899999999999999999999999999999999999999999987

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00