Citrus Sinensis ID: 047813

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70----
Protein Sequence
MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLANGNSKAPNNIPDLNLCSSSNTNPSNSSKP
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
merlnsklylqncYIMKENERLRKKAQLLNQENQALLSELKQKLAngnskapnnipdlnlcsssntnpsnsskp
Flexible Loop (DISEMBL)
merlnsklylqnCYIMKENERLRKKAQLLNQENQALLSELKQKLANGNSKapnnipdlnlcsssntnpsnsskp
Low Complexity Region (SEG)
MERLNSKLYLQNCYIMKENERLRKKaqllnqenqallselKQKLANGNSKAPNNIPDLNLCsssntnpsnssKP
Disordered region (IsUnstruct)
*******LYLQNCYIMK*********************************************************
Disordered Region (DISOPRED)
****NSKLYLQNCYIMKENERLRKKAQLLNQENQALL*************************************
Disordered Region (DISEMBL)
MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLANGNSKAPNNIPDLNLCSS***********
Disordered Region (DISPRO)
*ERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLANG***************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MERLNSKLYLQNCYIMKExxxxxxxxxxxxxxxxxxxxxxxxxxxxGNSKAPNNIPDLNLCSSSNTNPSNSSKP
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	74
255575653	77	conserved hypothetical protein [Ricinus	0.972	0.935	0.826	3e-23
224087395	77	predicted protein [Populus trichocarpa]	0.972	0.935	0.813	7e-22
356548417	77	PREDICTED: uncharacterized protein LOC10	0.972	0.935	0.776	1e-21
147790333	114	hypothetical protein VITISV_028348 [Viti	0.810	0.526	0.854	2e-19
297740100	77	unnamed protein product [Vitis vinifera]	0.810	0.779	0.854	3e-19
356534055	78	PREDICTED: uncharacterized protein LOC10	0.783	0.743	0.825	3e-18
356572546	76	PREDICTED: uncharacterized protein LOC10	0.810	0.789	0.793	1e-17
357511029	77	hypothetical protein MTR_7g104410 [Medic	0.810	0.779	0.796	2e-17
255568030	68	conserved hypothetical protein [Ricinus	0.905	0.985	0.705	6e-17
356505354	76	PREDICTED: uncharacterized protein LOC10	0.810	0.789	0.761	2e-16

>gi|255575653|ref|XP_002528726.1| conserved hypothetical protein [Ricinus communis] gi|223531820|gb|EEF33638.1| conserved hypothetical protein [Ricinus communis]

 Score =  112 bits (280), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 62/75 (82%), Positives = 64/75 (85%), Gaps = 3/75 (4%)

Query: 1  MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLANGNSKA---PNNIPD 57
          MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKL   NSKA    N IPD
Sbjct: 1  MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLTKTNSKANASNNTIPD 60

Query: 58 LNLCSSSNTNPSNSS 72
          LNL S+S  NP+NSS
Sbjct: 61 LNLSSTSTQNPTNSS 75

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087395|ref|XP_002308149.1| predicted protein [Populus trichocarpa] gi|222854125|gb|EEE91672.1| predicted protein [Populus trichocarpa]

 Score =  107 bits (268), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 61/75 (81%), Positives = 65/75 (86%), Gaps = 3/75 (4%)

Query: 1  MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLANGNSKA--PNN-IPD 57
          MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKL+  NSK   PN+ IPD
Sbjct: 1  MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKPNSKGNSPNDTIPD 60

Query: 58 LNLCSSSNTNPSNSS 72
          LNL SSS  +P+NS 
Sbjct: 61 LNLSSSSAPDPANSG 75

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548417|ref|XP_003542598.1| PREDICTED: uncharacterized protein LOC100789735 [Glycine max]

 Score =  107 bits (267), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/76 (77%), Positives = 64/76 (84%), Gaps = 4/76 (5%)

Query: 1  MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLANGNSKA----PNNIP 56
          MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKL+ GN KA     N I 
Sbjct: 1  MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSRGNQKANASNTNAIL 60

Query: 57 DLNLCSSSNTNPSNSS 72
          DL+L SS+  NPS+S+
Sbjct: 61 DLSLSSSATQNPSSST 76

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147790333|emb|CAN61197.1| hypothetical protein VITISV_028348 [Vitis vinifera]

 Score =  100 bits (248), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/62 (85%), Positives = 56/62 (90%), Gaps = 2/62 (3%)

Query: 1  MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLANGNSK--APNNIPDL 58
          MERLNSKLYLQNCYI++ENERLRKKAQLLNQENQALLSELKQKL+  NSK  A N IPDL
Sbjct: 38 MERLNSKLYLQNCYIIQENERLRKKAQLLNQENQALLSELKQKLSKANSKASAANTIPDL 97

Query: 59 NL 60
          NL
Sbjct: 98 NL 99

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740100|emb|CBI30282.3| unnamed protein product [Vitis vinifera]

 Score = 99.0 bits (245), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 53/62 (85%), Positives = 56/62 (90%), Gaps = 2/62 (3%)

Query: 1  MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLANGNSK--APNNIPDL 58
          MERLNSKLYLQNCYI++ENERLRKKAQLLNQENQALLSELKQKL+  NSK  A N IPDL
Sbjct: 1  MERLNSKLYLQNCYIIQENERLRKKAQLLNQENQALLSELKQKLSKANSKASAANTIPDL 60

Query: 59 NL 60
          NL
Sbjct: 61 NL 62

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534055|ref|XP_003535573.1| PREDICTED: uncharacterized protein LOC100527717 [Glycine max] gi|255633038|gb|ACU16874.1| unknown [Glycine max]

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/63 (82%), Positives = 53/63 (84%), Gaps = 5/63 (7%)

Query: 1  MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLANGNSKA-----PNNI 55
          MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKL+ GN KA     PN  
Sbjct: 1  MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLSKGNQKANNASNPNTF 60

Query: 56 PDL 58
           DL
Sbjct: 61 LDL 63

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572546|ref|XP_003554429.1| PREDICTED: uncharacterized protein LOC100790747 [Glycine max]

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/63 (79%), Positives = 55/63 (87%), Gaps = 3/63 (4%)

Query: 1  MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLANGNSK---APNNIPD 57
          MERLNS+LY QNC+IMKENERLRKKAQLLNQENQ LLSELK+KL+ GN+K   APN I D
Sbjct: 1  MERLNSELYYQNCHIMKENERLRKKAQLLNQENQQLLSELKKKLSKGNAKTNAAPNTIHD 60

Query: 58 LNL 60
          LNL
Sbjct: 61 LNL 63

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511029|ref|XP_003625803.1| hypothetical protein MTR_7g104410 [Medicago truncatula] gi|355500818|gb|AES82021.1| hypothetical protein MTR_7g104410 [Medicago truncatula]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/64 (79%), Positives = 58/64 (90%), Gaps = 4/64 (6%)

Query: 1  MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLAN--GNSK--APNNIP 56
          MERLN++LY QNC+IMKENERLRKKAQ+LNQENQALLS+LKQKL+N  GNSK  APNN+ 
Sbjct: 1  MERLNTELYYQNCHIMKENERLRKKAQILNQENQALLSQLKQKLSNGAGNSKTNAPNNML 60

Query: 57 DLNL 60
          DLNL
Sbjct: 61 DLNL 64

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568030|ref|XP_002524992.1| conserved hypothetical protein [Ricinus communis] gi|223535736|gb|EEF37399.1| conserved hypothetical protein [Ricinus communis]

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 48/68 (70%), Positives = 58/68 (85%), Gaps = 1/68 (1%)

Query: 1  MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLANGNSKAPNNIPDLNL 60
          ME++NSKLYLQNCY++++NE LRKKAQ LN+ENQALLSELKQKL+   S  PN+ PDLNL
Sbjct: 1  MEKVNSKLYLQNCYMIQQNEMLRKKAQQLNRENQALLSELKQKLSKSKS-TPNDNPDLNL 59

Query: 61 CSSSNTNP 68
           S+S TNP
Sbjct: 60 SSTSTTNP 67

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356505354|ref|XP_003521456.1| PREDICTED: uncharacterized protein LOC100820509 [Glycine max]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 48/63 (76%), Positives = 55/63 (87%), Gaps = 3/63 (4%)

Query: 1  MERLNSKLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQKLANGNSK---APNNIPD 57
          MERLNS+LY QNC+++KENERLRKKAQLLNQENQ LLSELK+KL+ GN+K   APN I D
Sbjct: 1  MERLNSELYYQNCHMIKENERLRKKAQLLNQENQQLLSELKKKLSKGNAKTNAAPNTILD 60

Query: 58 LNL 60
          LNL
Sbjct: 61 LNL 63

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	74
TAIR|locus:2083283	67	ZPR3 "AT3G52770" [Arabidopsis	0.702	0.776	0.537	1.2e-08

TAIR|locus:2083283 ZPR3 "AT3G52770" [Arabidopsis thaliana (taxid:3702)]

 Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 29/54 (53%), Positives = 34/54 (62%)

Query:     1 MERLNSKLYLQNCYIMKENERLRKKXXXXXXXXXXXXXXXKQKLANGNSKAPNN 54
             MERLNSKL+++NCYIMKENERLRKK               KQKL+   +K  NN
Sbjct:     1 MERLNSKLFVENCYIMKENERLRKKAELLNQENQQLLFQLKQKLSK--TKNSNN 52


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.131   0.378    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       74        48   0.00091  102 3  11 23  0.40    27
                                                     29  0.36    26


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  381 (41 KB)
  Total size of DFA:  65 KB (2061 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  5.21u 0.16s 5.37t   Elapsed:  00:00:01
  Total cpu time:  5.21u 0.16s 5.37t   Elapsed:  00:00:01
  Start:  Thu May  9 19:28:38 2013   End:  Thu May  9 19:28:39 2013

GO:0005515 "protein binding" evidence=IPI

GO:0009943 "adaxial/abaxial axis specification" evidence=IMP

GO:0010075 "regulation of meristem growth" evidence=IMP

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0010358 "leaf shaping" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0010073 "meristem maintenance" evidence=IGI

GO:0043433 "negative regulation of sequence-specific DNA binding transcription factor activity" evidence=IPI

GO:0006914 "autophagy" evidence=RCA

GO:0009062 "fatty acid catabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00060699 hypothetical protein (77 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	74
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	93.63
PF15058	200	Speriolin_N: Speriolin N terminus	92.59
smart00338	65	BRLZ basic region leucin zipper.	90.92
TIGR00219	283	mreC rod shape-determining protein MreC. MreC (mur	89.7
PRK13922	276	rod shape-determining protein MreC; Provisional	86.49
KOG0709	472	consensus CREB/ATF family transcription factor [Tr	83.56
PRK13922	276	rod shape-determining protein MreC; Provisional	83.32
PF10226	195	DUF2216: Uncharacterized conserved proteins (DUF22	83.28
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	83.11
PF12709	87	Kinetocho_Slk19: Central kinetochore-associated; I	82.97

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=93.63  E-value=0.53  Score=39.01  Aligned_cols=18  Identities=50%  Similarity=0.558  Sum_probs=16.0

Q ss_pred             HHHHhhhhHHHHhHHHHH
Q 047813            7 KLYLQNCYIMKENERLRK   24 (74)
Q Consensus         7 kLyleN~~Im~ENErLRk   24 (74)
                      +|--+|..+.+|||+||+
T Consensus        77 ~l~~~N~~l~~eN~~L~~   94 (472)
T TIGR03752        77 KLISENEALKAENERLQK   94 (472)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            566789999999999998

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>PF15058 Speriolin_N: Speriolin N terminus

Probab=92.59  E-value=0.25  Score=37.33  Aligned_cols=36  Identities=36%  Similarity=0.446  Sum_probs=27.1

Q ss_pred             HhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 047813           10 LQNCYIMKENERLRKKAQLLNQENQALLSELKQKLAN   46 (74)
Q Consensus        10 leN~~Im~ENErLRkkA~lL~qEnqaLlseLk~k~s~   46 (74)
                      =++.+.|.|||+|+|...++ +||+.|-+-|-+--..
T Consensus        12 hqierLv~ENeeLKKlVrLi-rEN~eLksaL~ea~~~   47 (200)
T PF15058_consen   12 HQIERLVRENEELKKLVRLI-RENHELKSALGEACAE   47 (200)
T ss_pred             HHHHHHHhhhHHHHHHHHHH-HHHHHHHHHHHHhhcc
Confidence            36778899999999988776 5778877776555443

>smart00338 BRLZ basic region leucin zipper

Probab=90.92  E-value=0.63  Score=27.33  Aligned_cols=29  Identities=41%  Similarity=0.481  Sum_probs=24.9

Q ss_pred             hhHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 047813           13 CYIMKENERLRKKAQLLNQENQALLSELK   41 (74)
Q Consensus        13 ~~Im~ENErLRkkA~lL~qEnqaLlseLk   41 (74)
                      ..+..||+.|+.++..|.+|+..|-.++.
T Consensus        36 ~~L~~en~~L~~~~~~l~~e~~~lk~~~~   64 (65)
T smart00338       36 EQLEAENERLKKEIERLRRELEKLKSELE   64 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45788999999999999999998887763

>TIGR00219 mreC rod shape-determining protein MreC

Probab=89.70  E-value=1  Score=33.68  Aligned_cols=30  Identities=33%  Similarity=0.308  Sum_probs=19.0

Q ss_pred             hHHHHhHHHHHHHHH-----------HHHHHHHHHHHHHHH
Q 047813           14 YIMKENERLRKKAQL-----------LNQENQALLSELKQK   43 (74)
Q Consensus        14 ~Im~ENErLRkkA~l-----------L~qEnqaLlseLk~k   43 (74)
                      .+.+||++||++-..           |.+||..|...|.-+
T Consensus        70 ~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~~~  110 (283)
T TIGR00219        70 NLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLNSP  110 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            466777877765322           566777766666544

MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.

>PRK13922 rod shape-determining protein MreC; Provisional

Probab=86.49  E-value=2.1  Score=30.78  Aligned_cols=22  Identities=27%  Similarity=0.231  Sum_probs=11.1

Q ss_pred             hhhHHHHhHHHHHHHHHHHHHH
Q 047813           12 NCYIMKENERLRKKAQLLNQEN   33 (74)
Q Consensus        12 N~~Im~ENErLRkkA~lL~qEn   33 (74)
                      -..+.+||++||++...|..+.
T Consensus        71 ~~~l~~en~~L~~e~~~l~~~~   92 (276)
T PRK13922         71 LFDLREENEELKKELLELESRL   92 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555554444443

>KOG0709 consensus CREB/ATF family transcription factor [Transcription]

Probab=83.56  E-value=0.88  Score=37.96  Aligned_cols=31  Identities=35%  Similarity=0.460  Sum_probs=27.7

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 047813           16 MKENERLRKKAQLLNQENQALLSELKQKLAN   46 (74)
Q Consensus        16 m~ENErLRkkA~lL~qEnqaLlseLk~k~s~   46 (74)
                      -+||..|.||.+.|..+|+-|+++|++-...
T Consensus       285 taeNqeL~kkV~~Le~~N~sLl~qL~klQt~  315 (472)
T KOG0709|consen  285 TAENQELQKKVEELELSNRSLLAQLKKLQTL  315 (472)
T ss_pred             ccCcHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            4799999999999999999999999875544

>PRK13922 rod shape-determining protein MreC; Provisional

Probab=83.32  E-value=4.4  Score=29.14  Aligned_cols=39  Identities=31%  Similarity=0.181  Sum_probs=31.9

Q ss_pred             hHHHHhhhhHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHh
Q 047813            6 SKLYLQNCYIMKENERLRKKAQ---LLNQENQALLSELKQKL   44 (74)
Q Consensus         6 ~kLyleN~~Im~ENErLRkkA~---lL~qEnqaLlseLk~k~   44 (74)
                      .+++-||...-+||.+|+....   .|.+||+.|...|.-+.
T Consensus        72 ~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~~~  113 (276)
T PRK13922         72 FDLREENEELKKELLELESRLQELEQLEAENARLRELLNLKE  113 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence            4688899999999999998877   67889988877765443

>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain

Probab=83.28  E-value=1.4  Score=33.23  Aligned_cols=20  Identities=25%  Similarity=0.448  Sum_probs=15.0

Q ss_pred             hHHHHhHHHHHHHHHHHHHH
Q 047813           14 YIMKENERLRKKAQLLNQEN   33 (74)
Q Consensus        14 ~Im~ENErLRkkA~lL~qEn   33 (74)
                      -+|+||-.||+-...|.+|.
T Consensus       126 ~L~rEN~eLKElcl~LDeer  145 (195)
T PF10226_consen  126 ELIRENLELKELCLYLDEER  145 (195)
T ss_pred             HHHHhHHHHHHHHHHHhccc
Confidence            46777777777777777776

Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=83.11  E-value=3.4  Score=26.06  Aligned_cols=30  Identities=30%  Similarity=0.499  Sum_probs=26.5

Q ss_pred             hhhhHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 047813           11 QNCYIMKENERLRKKAQLLNQENQALLSEL   40 (74)
Q Consensus        11 eN~~Im~ENErLRkkA~lL~qEnqaLlseL   40 (74)
                      +..-|+.+.+.|++|...|.+||..|-.++
T Consensus        69 K~~~l~~~i~~l~~ke~~l~~en~~L~~~~   98 (100)
T PF01486_consen   69 KDQLLMEQIEELKKKERELEEENNQLRQKI   98 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456789999999999999999999987765

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore

Probab=82.97  E-value=4  Score=27.21  Aligned_cols=34  Identities=38%  Similarity=0.430  Sum_probs=30.0

Q ss_pred             HHHHhhhhHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 047813            7 KLYLQNCYIMKENERLRKKAQLLNQENQALLSEL   40 (74)
Q Consensus         7 kLyleN~~Im~ENErLRkkA~lL~qEnqaLlseL   40 (74)
                      +|-.+|....+|||+||++-..-+.|-+.||.-|
T Consensus        53 ~L~~e~~~l~~E~e~L~~~l~~e~~Ek~~Ll~ll   86 (87)
T PF12709_consen   53 ELENENKALKRENEQLKKKLDTEREEKQELLKLL   86 (87)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            5678899999999999999999999999998754

Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	74
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	89.41
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	87.84
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	82.17
2j5u_A	255	MREC protein; bacterial cell shape determining pro	81.27
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	80.06

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=89.41  E-value=0.45  Score=27.67  Aligned_cols=27  Identities=22%  Similarity=0.332  Sum_probs=21.6

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 047813           15 IMKENERLRKKAQLLNQENQALLSELK   41 (74)
Q Consensus        15 Im~ENErLRkkA~lL~qEnqaLlseLk   41 (74)
                      +..||+.||.|-..|.++++.|-++|.
T Consensus        24 Lk~E~~eLk~k~~~L~~~~~el~~~l~   50 (53)
T 2yy0_A           24 LRLELAEMKEKYEAIVEENKKLKAKLA   50 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            567899999999999888877766654

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=87.84  E-value=1.2  Score=28.26  Aligned_cols=36  Identities=33%  Similarity=0.340  Sum_probs=27.1

Q ss_pred             HHHHhhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 047813            7 KLYLQNCYIMKENERLRKKAQLLNQENQALLSELKQ   42 (74)
Q Consensus         7 kLyleN~~Im~ENErLRkkA~lL~qEnqaLlseLk~   42 (74)
                      .+..+--.+-+||+.||.+.+.|.+|.+.|-..|.+
T Consensus        40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~   75 (87)
T 1hjb_A           40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ   75 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455567899999999999999998776655543

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=82.17  E-value=0.81  Score=28.45  Aligned_cols=28  Identities=36%  Similarity=0.420  Sum_probs=20.7

Q ss_pred             hhhhHHHHhHHHHHHHHHHHHHHHHHHH
Q 047813           11 QNCYIMKENERLRKKAQLLNQENQALLS   38 (74)
Q Consensus        11 eN~~Im~ENErLRkkA~lL~qEnqaLls   38 (74)
                      .--.+-+||+.||.+...|.+|...|-.
T Consensus        44 r~~~L~~eN~~L~~~v~~L~~E~~~Lr~   71 (78)
T 1gu4_A           44 KVLELTAENERLQKKVEQLSRELSTLRN   71 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445677899999999988888665543

>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}

Probab=81.27  E-value=1.3  Score=31.40  Aligned_cols=35  Identities=26%  Similarity=0.273  Sum_probs=20.0

Q ss_pred             HHHhhhhHHHHhHHHHHHH---HHHHHHHHHHHHHHHH
Q 047813            8 LYLQNCYIMKENERLRKKA---QLLNQENQALLSELKQ   42 (74)
Q Consensus         8 LyleN~~Im~ENErLRkkA---~lL~qEnqaLlseLk~   42 (74)
                      |+-||...-+||.+|+.+.   +.|.+||+.|...|.-
T Consensus        24 l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr~lL~~   61 (255)
T 2j5u_A           24 TYTENQHLKERLEELAQLESEVADLKKENKDLKESLDI   61 (255)
T ss_dssp             --CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4556666666666666443   3455677776665543

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=80.06  E-value=3.6  Score=23.46  Aligned_cols=27  Identities=26%  Similarity=0.256  Sum_probs=20.1

Q ss_pred             hHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 047813           14 YIMKENERLRKKAQLLNQENQALLSEL   40 (74)
Q Consensus        14 ~Im~ENErLRkkA~lL~qEnqaLlseL   40 (74)
                      .+-.+|..|+.....|..|+..|-..|
T Consensus        33 ~L~~~n~~L~~~i~~L~~e~~~Lk~~l   59 (61)
T 1t2k_D           33 DLSSLNGQLQSEVTLLRNEVAQLKQLL   59 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            566788888888888888877665443

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00